420 189 95 0 chr13 0 74 -101873095 - AluSg/x SINE Alu -115 197 117 380 378 5 15 chr13 221 417 -101872752 - MIR SINE MIR -6 256 63 219 198 8 83 chr13 881 1002 -101872167 + T-rich Low_complexity Low_complexity 5 116 0 2367 60 10 3 chr13 2757 3055 -101870114 + AluY SINE Alu 1 300 -11 692 202 9 0 chr13 3932 4046 -101869123 + FLAM_A SINE Alu 4 118 -15 21 36 0 0 chr13 4580 4608 -101868561 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr13 4738 4763 -101868406 + AT_rich Low_complexity Low_complexity 1 25 0 1847 148 34 3 chr13 4776 5074 -101868095 - AluSc SINE Alu -2 307 1 1738 68 0 5 chr13 5084 5303 -101867866 - AluY SINE Alu -10 301 84 27 29 0 0 chr13 5473 5507 -101867662 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr13 6072 6095 -101867074 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 6343 6367 -101866802 + AT_rich Low_complexity Low_complexity 1 24 0 725 249 61 0 chr13 6453 6650 -101866519 + L1MA4 LINE L1 6088 6296 -4 21 57 0 0 chr13 7797 7832 -101865337 + AT_rich Low_complexity Low_complexity 1 35 0 217 363 61 52 chr13 8370 8698 -101864471 + L2 LINE L2 2645 2975 -339 1937 101 0 4 chr13 9620 9878 -101863291 + AluY SINE Alu 50 306 -5 263 306 82 41 chr13 10505 10701 -101862468 + MIR SINE MIR 9 212 -50 225 330 66 9 chr13 11148 11254 -101861915 - L2 LINE L2 -256 3057 2946 182 300 114 29 chr13 11246 11316 -101861853 + L2 LINE L2 3168 3243 -29 * 21 36 0 0 chr13 11510 11538 -101861631 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 12063 12093 -101861076 + AT_rich Low_complexity Low_complexity 1 30 0 1698 164 43 16 chr13 12095 12399 -101860770 + AluSx SINE Alu 1 312 0 353 221 307 21 chr13 13093 13233 -101859936 - MER5A DNA MER1_type -1 188 9 24 85 0 0 chr13 13925 13984 -101859185 + AT_rich Low_complexity Low_complexity 1 59 0 395 165 12 0 chr13 15390 15475 -101857694 + (TG)n Simple_repeat Simple_repeat 1 86 0 1099 58 0 0 chr13 15507 15645 -101857524 + AluY SINE Alu 161 298 -13 180 0 0 0 chr13 15649 15669 -101857500 + (TAA)n Simple_repeat Simple_repeat 2 21 0 276 306 25 19 chr13 15867 16024 -101857145 - L1ME3A LINE L1 -243 5927 5770 4195 79 8 11 chr13 16259 17231 -101855938 - L1P2 LINE L1 -338 5816 4851 339 294 71 20 chr13 17232 17484 -101855685 - L1MEc LINE L1 -2721 3494 3230 1413 244 20 11 chr13 17501 17858 -101855311 - MLT1A1 LTR MaLR 0 365 6 842 279 55 40 chr13 17871 18269 -101854900 - L1MEc LINE L1 -3021 3194 2791 1338 224 41 94 chr13 18286 18879 -101854290 - L1MEc LINE L1 -3524 2691 2196 282 56 0 0 chr13 18879 18915 -101854254 + (TA)n Simple_repeat Simple_repeat 1 36 0 1338 224 41 94 chr13 18915 19156 -101854013 - L1MEc LINE L1 -4019 2196 1944 248 231 58 70 chr13 19309 19465 -101853704 - L1MEc LINE L1 -5270 1126 973 * 931 334 84 36 chr13 19433 20122 -101853047 - L1MEc LINE L1 -5635 761 40 338 282 86 0 chr13 20336 20453 -101852716 + L2 LINE L2 3187 3313 0 368 294 88 23 chr13 20922 21228 -101851941 - L1ME4a LINE L1 -278 5843 5518 22 56 0 0 chr13 21374 21410 -101851759 + AT_rich Low_complexity Low_complexity 1 36 0 277 289 0 0 chr13 24302 24392 -101848777 + L1MC4 LINE L1 6614 6703 -1339 309 317 63 7 chr13 25198 25340 -101847829 - L2 LINE L2 -443 2871 2722 351 0 0 0 chr13 26723 26762 -101846407 + (CA)n Simple_repeat Simple_repeat 2 40 0 5597 137 54 40 chr13 26791 29489 -101843680 - SVA Other Other -518 1384 432 4568 273 37 26 chr13 29502 29627 -101843542 + L1P LINE L1 1738 1860 -4286 2045 142 0 0 chr13 29627 29922 -101843247 - AluSx SINE Alu -17 295 1 4568 273 37 26 chr13 29922 31491 -101841678 + L1P LINE L1 1860 3450 -2696 3237 204 21 3 chr13 31493 32114 -101841055 + MSTB-int LTR MaLR 1020 1651 0 1675 243 16 0 chr13 32114 32485 -101840684 + MSTB LTR MaLR 1 377 -49 2254 218 14 10 chr13 32487 32982 -101840187 + L1 LINE L1 3447 3943 -2203 1721 142 32 4 chr13 32982 33258 -101839911 + AluSx SINE Alu 2 286 -22 219 36 0 0 chr13 33258 33286 -101839883 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 334 183 0 14 chr13 33293 33364 -101839805 + L1 LINE L1 2769 2838 -3308 229 310 17 35 chr13 34137 34311 -101838858 + CT-rich Low_complexity Low_complexity 5 175 0 543 271 55 52 chr13 35546 35929 -101837240 + HSREP522 Satellite telomeric 121 504 0 304 298 166 47 chr13 36971 37206 -101835963 - L1M2 LINE L1 -5605 1244 982 321 322 71 33 chr13 37373 37584 -101835585 - L1MDb LINE L1 -5783 626 408 259 231 122 39 chr13 37601 37757 -101835412 - L1MDb LINE L1 -5787 622 454 745 324 109 30 chr13 37764 38239 -101834930 - L1MDb LINE L1 -5793 616 104 24 0 0 0 chr13 38366 38390 -101834779 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 38465 38487 -101834682 + AT_rich Low_complexity Low_complexity 1 22 0 2076 122 0 3 chr13 38763 39057 -101834112 - AluSx SINE Alu -19 293 1 639 241 99 0 chr13 39059 39200 -101833969 - FRAM SINE Alu -21 155 1 328 78 0 112 chr13 39900 40079 -101833090 + (CCCCCA)n Simple_repeat Simple_repeat 2 160 0 1204 139 34 29 chr13 40501 40709 -101832460 + AluJo SINE Alu 6 214 -98 550 314 41 18 chr13 40831 41051 -101832118 - MIR SINE MIR -36 226 2 225 274 113 28 chr13 41353 41459 -101831710 - L2 LINE L2 0 3272 3158 2335 92 0 3 chr13 42136 42439 -101830730 + AluSg SINE Alu 1 302 -8 387 292 30 46 chr13 42442 42582 -101830587 + MIR SINE MIR 28 160 -48 573 246 221 5 chr13 42868 43067 -101830102 + MIR SINE MIR 14 255 -7 270 284 51 60 chr13 43607 43707 -101829462 - MIR3 SINE MIR -30 178 79 214 208 0 21 chr13 44357 44405 -101828764 - MIR SINE MIR -10 252 206 353 286 29 21 chr13 44662 44802 -101828367 + MIR SINE MIR 35 175 -87 520 285 40 7 chr13 45059 45210 -101827959 + MIR3 SINE MIR 19 174 -34 222 226 19 0 chr13 45461 45514 -101827655 + L3b LINE CR1 1335 1388 -195 236 30 30 0 chr13 46187 46220 -101826949 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 692 270 0 27 chr13 46236 46421 -101826748 + MIR SINE MIR 77 256 -6 387 275 33 0 chr13 46429 46549 -101826620 - MIR SINE MIR -55 207 84 2908 155 2 14 chr13 47812 48329 -101824840 + TAR1 Satellite telomeric 1558 2068 -43 470 127 7 72 chr13 48473 48769 -101824400 + (TTAGGG)n Simple_repeat Simple_repeat 1 276 0 8774 201 12 83 chr13 48770 49505 -101823664 - L1 LINE L1 -927 5219 4434 1136 157 0 0 chr13 49505 49683 -101823486 - AluSp SINE Alu 0 313 136 8774 201 12 83 chr13 49683 51926 -101821243 - L1 LINE L1 -1712 4434 2280 424 261 27 9 chr13 52159 52270 -101820899 - MER5B DNA MER1_type -3 175 63 531 31 0 0 chr13 52272 52337 -101820832 + (TC)n Simple_repeat Simple_repeat 2 66 0 258 32 0 0 chr13 52336 52367 -101820802 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 1177 244 168 66 chr13 52944 53431 -101819738 + MLT1F LTR MaLR 6 542 0 32 0 0 0 chr13 54710 54742 -101818427 + AT_rich Low_complexity Low_complexity 1 32 0 231 338 203 23 chr13 55161 55294 -101817875 + MIR3 SINE MIR 46 202 -6 189 299 75 47 chr13 55627 55734 -101817435 - L2 LINE L2 -7 3306 3197 23 68 0 0 chr13 56662 56706 -101816463 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 57342 57363 -101815806 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr13 57837 57862 -101815307 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 207 200 62 113 chr13 58320 58400 -101814769 - L2 LINE L2 0 3272 3197 526 220 55 0 chr13 58650 58759 -101814410 - MIR3 SINE MIR -12 196 82 913 266 22 0 chr13 59324 59546 -101813623 - MIR SINE MIR 0 262 36 182 357 20 31 chr13 60578 60676 -101812493 + L3b LINE CR1 1220 1316 -267 558 89 13 0 chr13 60892 60971 -101812198 + MADE1 DNA Mariner 1 80 0 2128 133 0 9 chr13 61381 61696 -101811473 + AluSx SINE Alu 1 312 0 941 203 17 0 chr13 61696 61873 -101811296 + AluSg/x SINE Alu 132 311 -1 2339 103 0 0 chr13 62258 62559 -101810610 + AluSq SINE Alu 1 301 -12 747 134 84 0 chr13 63745 63924 -101809245 + L1MC2 LINE L1 5224 5424 -743 2006 105 36 0 chr13 63924 64225 -101808944 + L1PA16 LINE L1 5842 6157 -9 4197 189 42 9 chr13 64234 65067 -101808102 + L1MC2 LINE L1 5413 6280 -64 2329 87 7 0 chr13 65067 65366 -101807803 - AluY SINE Alu -10 301 1 4197 189 42 9 chr13 65366 65428 -101807741 + L1MC2 LINE L1 6280 6338 -6 252 0 0 0 chr13 65896 65924 -101807245 + (A)n Simple_repeat Simple_repeat 1 28 0 29 0 0 0 chr13 66249 66278 -101806891 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 66302 66331 -101806838 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 66390 66415 -101806754 + AT_rich Low_complexity Low_complexity 1 25 0 196 359 142 0 chr13 66501 66607 -101806562 - MIR SINE MIR -125 137 17 21 0 0 0 chr13 67669 67690 -101805479 + AT_rich Low_complexity Low_complexity 1 21 0 277 322 30 10 chr13 67803 67913 -101805256 + MIR SINE MIR 38 148 -63 199 93 47 0 chr13 67954 67997 -101805172 + (TA)n Simple_repeat Simple_repeat 2 46 0 204 179 0 0 chr13 68613 68652 -101804517 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 1301 78 0 31 chr13 68949 69140 -101804029 - L1PA8 LINE L1 -1 6171 5987 50 42 0 0 chr13 69231 69302 -101803867 + AT_rich Low_complexity Low_complexity 1 71 0 2227 140 5 27 chr13 70568 70940 -101802229 - THE1B LTR MaLR 0 364 1 445 98 12 12 chr13 71986 72068 -101801101 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 1362 219 19 41 chr13 72069 72388 -101800781 - MSTD LTR MaLR -1 395 84 4490 213 74 75 chr13 72392 73125 -101800044 - L1MC3 LINE L1 -743 5403 4671 815 118 0 0 chr13 73125 73264 -101799905 + AluY SINE Alu 172 310 0 4490 213 74 75 chr13 73264 75268 -101797901 - L1MC3 LINE L1 -1475 4671 3530 1078 243 100 27 chr13 75312 75725 -101797444 + MLT2B1 LTR ERVL 1 464 0 1408 285 71 7 chr13 75729 76268 -101796901 + ERVL-B1 LTR ERVL 5 591 -5084 * 4409 186 21 10 chr13 76264 77090 -101796079 + ERVL-B1 LTR ERVL 4695 5529 -235 1822 229 76 19 chr13 77132 77564 -101795605 + MLT2B1 LTR ERVL 1 457 -63 700 14 88 7 chr13 77564 77711 -101795458 + (TA)n Simple_repeat Simple_repeat 2 160 0 351 0 0 0 chr13 77725 77764 -101795405 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 1582 161 79 37 chr13 77764 78119 -101795050 - THE1C LTR MaLR -3 372 3 1702 119 15 4 chr13 78121 78389 -101794780 - THE1C-int LTR MaLR 0 1580 1310 3156 107 16 7 chr13 78389 78838 -101794331 + MLT2A2 LTR ERVL 1 453 0 41267 95 11 8 chr13 78838 84471 -101788698 + HERVL-A2 LTR ERVL 1 5654 0 2415 89 3 0 chr13 84471 84784 -101788385 + MLT2A2 LTR ERVL 1 314 -139 216 0 0 0 chr13 84788 84812 -101788357 + (TA)n Simple_repeat Simple_repeat 2 25 0 339 49 0 0 chr13 84813 84854 -101788315 + MLT2A2 LTR ERVL 480 520 0 7775 129 35 53 chr13 84854 86192 -101786977 - THE1C-int LTR MaLR -266 1314 1 1547 173 74 28 chr13 86195 86547 -101786622 - THE1C LTR MaLR -3 372 5 447 277 19 19 chr13 86622 86835 -101786334 - L1MC3 LINE L1 -2659 3487 3275 1188 274 62 32 chr13 87118 87702 -101785467 + HAL1b LINE L1 12 612 -736 305 216 108 29 chr13 87832 87934 -101785235 - MLT1A1 LTR MaLR -236 129 20 24 32 0 0 chr13 88723 88754 -101784415 + AT_rich Low_complexity Low_complexity 1 31 0 401 293 115 6 chr13 89219 89393 -101783776 - MLT1L LTR MaLR -11 604 412 958 233 118 76 chr13 89979 90464 -101782705 - MLT1D LTR MaLR 0 505 1 523 252 16 8 chr13 90481 90604 -101782565 - L2 LINE L2 0 3313 3190 829 251 23 32 chr13 90611 90830 -101782339 - MER58A DNA MER1_type -6 218 2 197 290 9 37 chr13 90840 90947 -101782222 - L2 LINE L2 -125 3188 3085 405 316 108 58 chr13 90957 91337 -101781832 - MLT1J2 LTR MaLR -19 431 33 2131 109 7 0 chr13 91341 91624 -101781545 + AluSx SINE Alu 1 285 -27 347 309 39 34 chr13 91812 92094 -101781075 + MLT1J2 LTR MaLR 84 436 -14 709 259 121 17 chr13 92115 92553 -101780616 - L2 LINE L2 -357 2957 2413 231 189 0 0 chr13 92558 92595 -101780574 - 5S rRNA rRNA -83 38 2 360 194 0 0 chr13 93369 93436 -101779733 - AluJ/FRAM SINE Alu -8 294 228 733 191 0 22 chr13 93437 93573 -101779596 - AluJo/FLAM SINE Alu -179 133 1 2469 188 112 65 chr13 93928 94559 -101778610 - L1MA9 LINE L1 -36 6276 5605 1867 158 7 0 chr13 94559 94850 -101778319 - AluSx SINE Alu -19 293 1 2469 188 112 65 chr13 94850 94942 -101778227 - L1MA9 LINE L1 -707 5605 5519 2039 116 0 3 chr13 95403 95687 -101777482 - AluSq SINE Alu -30 283 1 285 204 0 0 chr13 95813 95857 -101777312 + FAM SINE Alu 63 106 -69 435 87 0 0 chr13 95857 95926 -101777243 + (TG)n Simple_repeat Simple_repeat 2 70 0 2388 70 0 10 chr13 95942 96244 -101776925 + AluY SINE Alu 1 299 -12 4972 190 73 46 chr13 96895 98406 -101774763 + MER52A LTR ERV1 1 1755 0 198 71 0 0 chr13 98986 99014 -101774155 + (TG)n Simple_repeat Simple_repeat 1 28 0 1488 170 123 62 chr13 99563 99904 -101773265 + MLT2D LTR ERVL 5 366 -48 257 235 47 0 chr13 99930 100015 -101773154 - L1MC4 LINE L1 -1340 6702 6614 182 352 32 48 chr13 100825 100950 -101772219 - MER5A DNA MER1_type -37 152 30 590 86 0 0 chr13 101360 101441 -101771728 - MER72 LTR ERV1 0 722 642 1488 208 0 0 chr13 101444 101718 -101771451 - AluJo SINE Alu -9 303 30 196 325 88 6 chr13 103934 104067 -101769102 - MIR SINE MIR -63 145 8 208 158 35 18 chr13 104135 104192 -101768977 + A-rich Low_complexity Low_complexity 2 59 0 2377 142 37 40 chr13 105197 105626 -101767543 - MSTA LTR MaLR 0 428 1 186 118 0 0 chr13 105670 105704 -101767465 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 336 24 0 0 chr13 106492 106533 -101766636 + (CA)n Simple_repeat Simple_repeat 2 42 0 248 172 0 16 chr13 106592 106656 -101766513 + (TG)n Simple_repeat Simple_repeat 2 64 0 210 143 0 0 chr13 108199 108234 -101764935 + (A)n Simple_repeat Simple_repeat 1 35 0 271 43 0 43 chr13 108447 108494 -101764675 + (CAA)n Simple_repeat Simple_repeat 1 45 0 189 147 0 0 chr13 108579 108613 -101764556 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 26 0 0 0 chr13 111031 111057 -101762112 + AT_rich Low_complexity Low_complexity 1 26 0 418 291 95 0 chr13 111177 111325 -101761844 + MIR SINE MIR 84 245 -17 209 271 86 0 chr13 111617 111687 -101761482 + MIR SINE MIR 187 262 0 2234 132 5 27 chr13 111747 112119 -101761050 + THE1B LTR MaLR 1 364 0 2189 104 3 0 chr13 113214 113502 -101759667 - AluSc SINE Alu -16 293 5 1220 329 45 11 chr13 113506 113968 -101759201 - L2 LINE L2 -21 3292 2815 707 244 311 28 chr13 114123 114512 -101758657 - L2 LINE L2 -495 2819 2321 282 341 11 0 chr13 114597 114685 -101758484 - L2 LINE L2 -2 3311 3223 23 0 0 53 chr13 115223 115243 -101757926 + AT_rich Low_complexity Low_complexity 1 20 -16 2002 124 3 20 chr13 115243 115549 -101757620 + AluSq SINE Alu 1 301 -12 23 0 0 53 chr13 115549 115566 -101757603 + AT_rich Low_complexity Low_complexity 20 36 0 26 88 0 0 chr13 116161 116229 -101756940 + AT_rich Low_complexity Low_complexity 1 68 0 31 44 0 0 chr13 116768 116813 -101756356 + AT_rich Low_complexity Low_complexity 1 45 0 219 139 0 0 chr13 117379 117415 -101755754 + (TG)n Simple_repeat Simple_repeat 2 37 0 225 198 66 66 chr13 117782 117873 -101755296 + LTR66 LTR ERVL 344 434 -176 186 43 0 0 chr13 117874 117897 -101755272 + (GA)n Simple_repeat Simple_repeat 2 24 0 985 263 44 68 chr13 118051 118548 -101754621 - MLT1H1 LTR MaLR 0 595 1 687 266 6 0 chr13 118781 118954 -101754215 + FRAM SINE Alu 1 171 -5 36 0 0 0 chr13 120718 120754 -101752415 + AT_rich Low_complexity Low_complexity 1 36 0 219 276 102 31 chr13 120988 121115 -101752054 + L2 LINE L2 3136 3271 -1 1049 201 34 8 chr13 122484 122723 -101750446 + Zaphod DNA AcHobo 3779 4023 -8 5135 159 42 29 chr13 123213 123242 -101749927 - L1MA5 LINE L1 -2 6298 6271 9045 117 5 1 chr13 123242 124524 -101748645 + HSMAR1 DNA Mariner 1 1287 0 5135 159 42 29 chr13 124524 126219 -101746950 - L1MA5 LINE L1 -29 6271 4553 434 335 79 32 chr13 127604 128046 -101745123 + L2 LINE L2 2228 2690 -624 875 255 90 17 chr13 128514 128871 -101744298 - Charlie2 DNA MER1_type -41 2821 2439 2093 98 35 0 chr13 128883 129169 -101744000 + AluSp SINE Alu 1 296 -17 180 0 0 0 chr13 129180 129200 -101743969 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 1172 85 0 0 chr13 129207 129360 -101743809 - AluSp SINE Alu -31 282 130 225 259 0 0 chr13 129476 129534 -101743635 - L1MC4 LINE L1 -1326 6716 6659 23 0 0 0 chr13 129730 129753 -101743416 + AT_rich Low_complexity Low_complexity 1 23 0 282 29 0 0 chr13 130205 130240 -101742929 + (TC)n Simple_repeat Simple_repeat 1 35 0 47 73 0 0 chr13 130358 130454 -101742715 + AT_rich Low_complexity Low_complexity 1 96 0 27 49 0 0 chr13 130945 130986 -101742183 + AT_rich Low_complexity Low_complexity 1 41 0 628 294 43 7 chr13 131188 131464 -101741705 - L1ME4a LINE L1 -270 5851 5566 216 67 0 0 chr13 132295 132325 -101740844 + (TG)n Simple_repeat Simple_repeat 1 30 0 26 30 0 0 chr13 133340 133373 -101739796 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 133408 133430 -101739739 + AT_rich Low_complexity Low_complexity 1 22 0 2123 130 0 0 chr13 133435 133728 -101739441 - AluSx SINE Alu -19 293 1 273 242 0 0 chr13 134680 134742 -101738427 + MIR SINE MIR 187 248 -14 21 0 0 0 chr13 134760 134781 -101738388 + AT_rich Low_complexity Low_complexity 1 21 0 617 316 43 8 chr13 135531 135787 -101737382 + LTR16A1 LTR ERVL 173 437 -20 2175 114 3 0 chr13 136000 136297 -101736872 - AluSq SINE Alu -15 298 1 27 49 0 0 chr13 136419 136460 -101736709 + AT_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr13 137447 137480 -101735689 + AT_rich Low_complexity Low_complexity 1 33 0 1726 129 7 41 chr13 137681 137975 -101735194 + AluSx SINE Alu 11 294 -18 3183 69 7 0 chr13 138363 138797 -101734372 + L1PA8 LINE L1 5734 6170 -2 1724 106 4 0 chr13 138797 139033 -101734136 + AluSx SINE Alu 60 296 -16 240 35 0 0 chr13 139577 139606 -101733563 + (TG)n Simple_repeat Simple_repeat 2 30 0 2342 57 0 0 chr13 140416 140744 -101732425 - AluY SINE Alu 0 328 1 286 325 94 49 chr13 141861 142064 -101731105 + MIR SINE MIR 48 259 -3 327 258 0 86 chr13 142329 142457 -101730712 - MER5B DNA MER1_type -43 135 19 1823 196 52 28 chr13 142574 142961 -101730208 + MSTD LTR MaLR 1 396 0 207 139 0 0 chr13 143082 143118 -101730051 + (CAA)n Simple_repeat Simple_repeat 2 37 0 336 48 0 0 chr13 143714 143756 -101729413 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 89 0 0 chr13 144238 144294 -101728875 + AT_rich Low_complexity Low_complexity 1 56 0 4199 184 11 25 chr13 144837 145044 -101728125 + L1MA8 LINE L1 5114 5322 -969 1932 149 10 0 chr13 145044 145340 -101727829 + AluSq SINE Alu 1 299 -14 4199 184 11 25 chr13 145340 146152 -101727017 + L1MA8 LINE L1 5322 6119 -172 289 218 108 18 chr13 146183 146361 -101726808 - L1M4 LINE L1 -312 5866 5677 2411 74 0 0 chr13 146368 146664 -101726505 + AluY SINE Alu 1 296 -15 513 301 57 66 chr13 146665 147000 -101726169 + MLT1H1 LTR MaLR 20 351 -204 7131 191 6 39 chr13 147022 147476 -101725693 + L1P LINE L1 3409 3876 -2270 2049 130 3 3 chr13 147476 147783 -101725386 + AluSc SINE Alu 1 307 -2 7131 191 6 39 chr13 147783 148266 -101724903 + L1P LINE L1 3876 4373 -1773 1684 191 3 0 chr13 148266 148559 -101724610 + AluJb SINE Alu 1 294 -18 7131 191 6 39 chr13 148559 149183 -101723986 + L1P LINE L1 4373 4920 -1226 3430 72 13 4 chr13 149185 149658 -101723511 - MER11A LTR ERVK 0 1266 790 191 258 75 118 chr13 150110 150203 -101722966 + L3 LINE CR1 1439 1527 -50 2388 75 0 0 chr13 150298 150592 -101722577 + AluY SINE Alu 1 294 -17 223 269 166 28 chr13 150774 150919 -101722250 - MIR SINE MIR -47 215 51 221 209 136 64 chr13 151845 151955 -101721214 + MIR SINE MIR 89 206 -56 2288 195 45 10 chr13 152414 152906 -101720263 + LTR22 LTR ERVK 1 509 0 2441 60 0 3 chr13 152978 153278 -101719891 - AluY SINE Alu -11 300 2 1874 285 92 69 chr13 153676 154824 -101718345 + L1MCc LINE L1 19 1192 -5231 825 248 30 52 chr13 154825 154990 -101718179 + L1MCc LINE L1 2861 3028 -3913 2557 52 0 0 chr13 154990 155296 -101717873 + AluY SINE Alu 1 306 -5 825 248 30 52 chr13 155296 155612 -101717557 + L1MCc LINE L1 3028 3292 -3649 1721 232 37 34 chr13 155613 155825 -101717344 - L1M4 LINE L1 -774 5372 5162 2195 128 0 10 chr13 155825 156138 -101717031 + AluSx SINE Alu 1 310 -2 1844 118 17 37 chr13 156143 156439 -101716730 + AluSc SINE Alu 6 295 -14 1721 232 37 34 chr13 156439 156788 -101716381 - L1M4 LINE L1 -987 5159 4803 2451 219 48 76 chr13 156790 157580 -101715589 + L1MB1 LINE L1 5401 6168 0 2207 108 15 6 chr13 157642 157984 -101715185 + L1PB1 LINE L1 5804 6148 -3 23 0 0 0 chr13 157984 158007 -101715162 + AT_rich Low_complexity Low_complexity 1 23 0 863 125 0 0 chr13 158441 158569 -101714600 + AluSg/x SINE Alu 178 305 -5 1925 121 7 11 chr13 158594 158875 -101714294 + AluSx SINE Alu 1 280 -32 33 80 0 0 chr13 159964 160039 -101713130 + AT_rich Low_complexity Low_complexity 1 75 0 321 26 0 0 chr13 161487 161525 -101711644 + (CA)n Simple_repeat Simple_repeat 1 38 0 2035 128 0 0 chr13 163022 163443 -101709726 - AluSq SINE Alu 0 423 3 1136 258 31 123 chr13 163449 164003 -101709166 - MLT1E2 LTR MaLR -2 503 1 2090 103 0 7 chr13 164051 164353 -101708816 - AluY SINE Alu 0 300 1 378 269 123 15 chr13 165356 165624 -101707545 + HAL1 LINE L1 971 1267 -1240 * 812 305 79 16 chr13 165614 166182 -101706987 + HAL1 LINE L1 1036 1639 -868 755 230 8 60 chr13 166183 166418 -101706751 + HAL1 LINE L1 1531 1753 -754 227 312 8 56 chr13 166470 166595 -101706574 - L2 LINE L2 0 3313 3195 317 307 144 23 chr13 166643 166858 -101706311 + HAL1 LINE L1 2267 2507 0 203 169 0 85 chr13 166911 166970 -101706199 + GA-rich Low_complexity Low_complexity 1 54 0 319 146 0 36 chr13 167151 167206 -101705963 - MER39 LTR ERV1 0 707 655 407 319 145 0 chr13 167660 167826 -101705343 - MIR SINE MIR -34 228 39 591 367 129 23 chr13 167965 168737 -101704432 - L3 LINE CR1 -101 1476 623 30 0 0 0 chr13 168945 168975 -101704194 + AT_rich Low_complexity Low_complexity 1 30 0 231 337 127 17 chr13 168982 169163 -101704006 - L3 LINE CR1 -1050 527 327 230 0 33 0 chr13 169356 169386 -101703783 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2320 38 0 0 chr13 169400 169663 -101703506 - AluY SINE Alu -48 263 1 914 274 164 34 chr13 169796 170713 -101702456 + HAL1b LINE L1 208 1243 -105 2052 176 36 28 chr13 170716 171261 -101701908 - MLT2A2 LTR ERVL -3 551 1 554 331 60 40 chr13 171481 171880 -101701289 + LTR33 LTR ERVL 1 407 -114 1920 161 0 0 chr13 173959 174258 -101698911 - AluSx SINE Alu -13 299 1 1957 129 16 19 chr13 174613 174924 -101698245 + AluY SINE Alu 1 310 -1 306 263 110 25 chr13 175332 175450 -101697719 + MER67B LTR ERV1 32 159 -502 3854 154 82 11 chr13 175450 176144 -101697025 + LTR1B LTR ERV1 1 743 -83 474 190 111 0 chr13 176143 176266 -101696903 - MER67B LTR ERV1 -358 277 60 648 115 19 19 chr13 176266 176370 -101696799 - LTR1B LTR ERV1 0 826 723 1335 77 0 0 chr13 176370 176540 -101696629 + AluY SINE Alu 136 305 -6 10435 214 33 51 chr13 176540 180489 -101692680 + L1MC3 LINE L1 2405 6423 -1572 2368 103 20 8 chr13 180489 180840 -101692329 - THE1A LTR MaLR 0 355 1 10636 94 9 55 chr13 180840 182492 -101690677 - THE1A-int LTR MaLR 0 1580 4 329 50 0 0 chr13 182492 182532 -101690637 - THE1A LTR MaLR -315 40 1 10435 214 33 51 chr13 182532 182820 -101690349 + L1MC3 LINE L1 6420 7969 -26 2229 145 36 3 chr13 182889 183054 -101690115 - L1M1 LINE L1 -527 5773 5615 2052 134 0 0 chr13 183054 183337 -101689832 - AluSx SINE Alu -9 303 21 399 41 0 0 chr13 183339 183388 -101689781 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2229 145 36 3 chr13 183388 183611 -101689558 - L1M1 LINE L1 -685 5615 5369 2191 144 126 5 chr13 183610 184053 -101689116 + L1MA4 LINE L1 5801 6297 -3 * 183 42 0 0 chr13 185402 185426 -101687743 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1890 154 0 24 chr13 185429 185727 -101687442 - AluSx SINE Alu -21 291 1 791 244 72 9 chr13 185968 186189 -101686980 + MER46A DNA MER2_type 1 235 -1 550 252 47 65 chr13 186302 186516 -101686653 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 186516 186565 -101686604 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 186577 186598 -101686571 + AT_rich Low_complexity Low_complexity 1 21 0 2031 126 0 3 chr13 186689 186975 -101686194 + AluSq SINE Alu 1 285 -28 1134 258 14 14 chr13 187550 187911 -101685258 + L1 LINE L1 3373 3733 -2413 837 179 103 26 chr13 187907 188141 -101685028 + L1 LINE L1 4358 4609 -1537 * 1039 228 57 25 chr13 188302 188898 -101684271 + L1M4c LINE L1 2113 2729 -3653 593 219 103 0 chr13 188953 189108 -101684061 + L1M4c LINE L1 3764 3934 -2448 6010 233 17 14 chr13 189123 190605 -101682564 + L1PA15-16 LINE L1 5 1257 -5592 1199 100 11 17 chr13 190606 190786 -101682383 - THE1B LTR MaLR 0 364 186 496 182 0 0 chr13 190933 191005 -101682164 - MER58A DNA MER1_type -1 223 152 496 250 0 9 chr13 191005 191121 -101682048 - MER58A DNA MER1_type 0 115 1 367 333 57 13 chr13 191258 191417 -101681752 + L2 LINE L2 2819 2984 -329 2664 182 96 33 chr13 191651 192316 -101680853 - MER39 LTR ERV1 0 707 1 262 209 22 143 chr13 193129 193220 -101679949 - MER77 LTR ERV1 -515 90 11 225 152 22 0 chr13 193230 193276 -101679893 + HAL1 LINE L1 2327 2373 -134 3705 243 48 34 chr13 193786 195187 -101677982 + L1M4 LINE L1 3371 4791 -1355 308 24 24 0 chr13 195188 195229 -101677940 + (TA)n Simple_repeat Simple_repeat 1 42 0 250 368 40 8 chr13 195579 195704 -101677465 + L2 LINE L2 3142 3270 -2 649 163 12 17 chr13 195773 195945 -101677224 + GA-rich Low_complexity Low_complexity 3 173 0 2462 159 20 0 chr13 196052 196449 -101676720 + MSTA-int LTR MaLR 1247 1651 0 2062 145 89 8 chr13 196474 196846 -101676323 + MSTA LTR MaLR 27 428 0 791 244 72 9 chr13 197188 197409 -101675760 + MER46A DNA MER2_type 1 235 -1 550 252 47 65 chr13 197522 197736 -101675433 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 197736 197785 -101675384 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 197797 197818 -101675351 + AT_rich Low_complexity Low_complexity 1 21 0 1626 189 0 3 chr13 197909 198195 -101674974 + AluSq SINE Alu 1 285 -28 627 261 56 20 chr13 198770 199111 -101674058 + L1MB4 LINE L1 3373 3725 -2421 9728 119 31 44 chr13 199307 200893 -101672276 - THE1C-int LTR MaLR -14 1566 1 1547 173 74 28 chr13 200896 201248 -101671921 - THE1C LTR MaLR -3 372 5 447 277 19 19 chr13 201323 201536 -101671633 - L1M4 LINE L1 -2659 3487 3275 22 0 0 0 chr13 201861 201883 -101671286 + AT_rich Low_complexity Low_complexity 1 22 0 2773 242 75 11 chr13 201909 202235 -101670934 + L1MB4 LINE L1 4981 5285 -895 1982 125 0 4 chr13 202235 202516 -101670653 + AluSq SINE Alu 3 282 -31 2773 242 75 11 chr13 202516 203160 -101670009 + L1MB4 LINE L1 5285 6000 -180 612 232 60 12 chr13 203172 203340 -101669829 + L1M4 LINE L1 4690 4865 -1281 442 268 54 12 chr13 203360 203528 -101669641 + L1MB4 LINE L1 6006 6180 0 701 229 79 31 chr13 203641 204083 -101669086 + L1M4 LINE L1 2131 3169 -2977 225 0 0 0 chr13 205184 205209 -101667960 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2497 187 55 6 chr13 205364 205856 -101667313 - MLT2B1 LTR ERVL -4 516 1 22 35 0 0 chr13 206472 206501 -101666668 + AT_rich Low_complexity Low_complexity 1 29 0 2354 67 0 13 chr13 206664 206962 -101666207 + AluY SINE Alu 1 294 -17 1140 282 96 14 chr13 207036 207451 -101665718 + LTR16A LTR ERVL 1 449 -1 268 297 22 72 chr13 207451 207589 -101665580 + MER94 DNA DNA 4 134 0 376 313 48 24 chr13 207611 207777 -101665392 + MIR SINE MIR 63 232 -30 366 274 61 17 chr13 207773 207902 -101665267 - MIR SINE MIR -63 145 37 * 656 302 32 29 chr13 208010 208288 -101664881 - MLT1K LTR MaLR -10 578 300 845 300 91 3 chr13 208383 208703 -101664466 + L2 LINE L2 1321 1668 -1646 238 255 89 76 chr13 209466 209623 -101663546 - MIR SINE MIR -44 218 60 309 320 0 19 chr13 209697 209800 -101663369 + MLT1F LTR MaLR 18 118 -424 247 280 119 63 chr13 209854 209997 -101663172 + MLT1F1 LTR MaLR 229 379 -211 * 278 312 151 29 chr13 209972 210177 -101662992 + MLT1F1 LTR MaLR 330 559 -8 257 320 24 32 chr13 210309 210434 -101662735 + MIR SINE MIR 29 152 -110 21 89 0 0 chr13 210491 210547 -101662622 + AT_rich Low_complexity Low_complexity 1 56 0 305 319 34 8 chr13 210631 210750 -101662419 - L2 LINE L2 0 3313 3192 494 289 7 0 chr13 211788 211937 -101661232 + L1M4 LINE L1 2 151 -6391 195 313 15 30 chr13 212321 212388 -101660781 - MIR SINE MIR -15 247 182 2372 73 0 10 chr13 212668 212968 -101660201 - AluY SINE Alu -14 297 1 310 303 113 21 chr13 213393 213631 -101659538 - MIR SINE MIR 0 262 3 243 0 0 0 chr13 214649 214676 -101658493 + (A)n Simple_repeat Simple_repeat 1 27 0 24 53 0 0 chr13 265016 265054 -101608115 + AT_rich Low_complexity Low_complexity 1 38 0 1031 136 22 33 chr13 266650 266834 -101606335 - MER49 LTR ERV1 -27 896 715 390 230 70 0 chr13 267984 268084 -101605085 - MER5A DNA MER1_type -81 108 2 1798 142 26 33 chr13 269781 270084 -101603085 - AluSx SINE Alu -9 303 3 835 174 128 78 chr13 270126 270345 -101602824 - MER46A DNA MER2_type 0 236 7 188 209 0 0 chr13 271531 271574 -101601595 + MIR SINE MIR 99 141 -67 997 166 6 6 chr13 273184 273347 -101599822 - AluSx SINE Alu -149 163 1 21 36 0 0 chr13 273642 273670 -101599499 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 274823 274867 -101598302 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 275246 275267 -101597902 + AT_rich Low_complexity Low_complexity 1 21 0 208 313 0 0 chr13 275783 275831 -101597338 - L2 LINE L2 -15 3257 3210 507 123 0 0 chr13 275870 275943 -101597226 + MADE1 DNA Mariner 3 75 -5 823 219 101 6 chr13 276879 277048 -101596121 - MER5A DNA MER1_type -4 185 1 226 200 100 78 chr13 277906 277996 -101595173 + MARNA DNA Mariner 15 106 -480 1432 222 134 43 chr13 278338 279039 -101594130 + LTR1B LTR ERV1 137 826 0 431 257 9 0 chr13 279295 279408 -101593761 - LTR43 LTR ERV1 -306 296 183 1999 98 8 4 chr13 279999 280264 -101592905 - AluSq SINE Alu -1 312 47 1807 180 53 6 chr13 280644 280983 -101592186 - MLT1A1 LTR MaLR 0 365 11 1241 133 5 27 chr13 281101 281289 -101591880 - AluSg/x SINE Alu -20 292 109 1930 215 81 26 chr13 282134 282627 -101590542 + L1MB8 LINE L1 5653 6172 -6 366 318 54 7 chr13 283699 283847 -101589322 + L2 LINE L2 2730 2884 -430 24 32 0 0 chr13 284169 284200 -101588969 + AT_rich Low_complexity Low_complexity 1 31 0 969 234 48 18 chr13 284557 284701 -101588468 - L1MB7 LINE L1 0 6184 6041 345 239 27 82 chr13 284701 284885 -101588284 - L1MD3 LINE L1 -1960 6035 5862 3758 76 46 32 chr13 285359 285884 -101587285 - SVA Other Other -5 1381 850 744 239 198 25 chr13 286011 286254 -101586915 - THE1-int LTR MaLR -389 1191 907 842 231 82 12 chr13 286269 286524 -101586645 + MSTA LTR MaLR 95 367 -61 483 183 148 49 chr13 286567 286709 -101586460 - MST-int LTR MaLR -990 661 506 * 4918 232 56 52 chr13 286706 288210 -101584959 + MSTA-int LTR MaLR 28 1537 -114 5246 238 61 35 chr13 288310 289801 -101583368 - MSTA-int LTR MaLR -96 1555 26 458 227 167 8 chr13 289797 289929 -101583240 + MST-int LTR MaLR 507 659 -992 * 1012 235 56 8 chr13 289965 290233 -101582936 - MSTA LTR MaLR -52 376 96 399 232 11 11 chr13 290253 290348 -101582821 + THE1-int LTR MaLR 907 1001 -579 598 164 0 4 chr13 291147 291315 -101581854 + HSAT5 Satellite Satellite 1 167 -3 305 182 34 57 chr13 291535 291623 -101581546 + HSAT5 Satellite Satellite 1 86 0 334 218 12 6 chr13 291854 291960 -101581209 + HSAT5 Satellite Satellite 1 106 -7 * 472 272 26 9 chr13 291944 292096 -101581073 - MSTA LTR MaLR -141 285 133 738 242 189 20 chr13 292143 292387 -101580782 + THE1-int LTR MaLR 907 1191 -389 * 3267 306 41 21 chr13 292375 293358 -101579811 - MSTA-int LTR MaLR -616 1035 34 332 244 170 7 chr13 293358 293493 -101579676 + MST-int LTR MaLR 503 659 -992 947 267 49 8 chr13 293531 293797 -101579372 - MSTA LTR MaLR -54 374 98 686 242 186 22 chr13 293824 294055 -101579114 + THE1-int LTR MaLR 907 1175 -405 231 236 18 0 chr13 294057 294112 -101579057 - THE1-int LTR MaLR -614 966 911 555 135 21 10 chr13 294197 294293 -101578876 - MSTA LTR MaLR -331 97 1 1434 196 6 44 chr13 294293 294634 -101578535 - MSTA-int LTR MaLR 0 1651 1324 277 214 114 0 chr13 294634 294704 -101578465 - MSTA LTR MaLR -248 180 103 701 186 0 70 chr13 294822 294994 -101578175 - MSTA-int LTR MaLR -174 1477 1318 309 226 32 0 chr13 295001 295063 -101578106 - MSTA LTR MaLR -269 159 96 469 214 20 0 chr13 295139 295237 -101577932 - MSTA LTR MaLR -328 100 1 5987 222 53 38 chr13 295237 296831 -101576338 - MSTA-int LTR MaLR 0 1651 34 646 238 191 26 chr13 297072 297303 -101575866 - MSTA-int LTR MaLR -405 1175 907 1073 231 56 7 chr13 297325 297594 -101575575 + MSTA LTR MaLR 95 376 -52 508 240 32 26 chr13 297611 297765 -101575404 - MSTA-int LTR MaLR -963 617 463 * 5556 217 53 47 chr13 297760 299306 -101573863 + MSTA-int LTR MaLR 28 1583 -68 343 159 0 48 chr13 299378 299441 -101573728 - MSTA LTR MaLR -52 376 317 388 158 26 0 chr13 299443 299519 -101573650 + MSTA-int LTR MaLR 1574 1651 0 365 263 10 0 chr13 299519 299618 -101573551 + MSTA LTR MaLR 1 100 -328 1849 222 56 15 chr13 299861 300762 -101572407 - L1M4 LINE L1 -464 5714 4771 697 321 77 10 chr13 302104 302483 -101570686 - MLT1G1 LTR MaLR -34 561 79 1255 183 73 0 chr13 302520 302794 -101570375 - L1MA5 LINE L1 -6 6294 6001 1017 236 31 12 chr13 302861 303120 -101570049 - AluJo SINE Alu -48 264 1 3067 212 32 15 chr13 303121 304079 -101569090 - L1MA5 LINE L1 -354 5946 4969 24 0 0 0 chr13 304510 304534 -101568635 + AT_rich Low_complexity Low_complexity 1 24 0 372 267 0 0 chr13 305640 305741 -101567428 - L1MA9 LINE L1 -49 6263 6163 425 171 0 0 chr13 306682 306758 -101566411 - AluS SINE Alu -12 298 223 1801 114 35 4 chr13 306858 307112 -101566057 - AluSg SINE Alu -48 262 1 21 36 0 0 chr13 307167 307195 -101565974 + AT_rich Low_complexity Low_complexity 1 28 0 881 160 0 0 chr13 307195 307320 -101565849 - FLAM_C SINE Alu -18 125 1 306 366 0 7 chr13 307902 308044 -101565125 - HERV16 LTR ERVL -4335 661 521 2218 105 3 7 chr13 308104 308408 -101564761 - AluSp SINE Alu 0 313 11 1587 184 153 22 chr13 308660 309073 -101564096 - MLT1C LTR MaLR 0 467 1 572 257 161 8 chr13 309257 309506 -101563663 - LTR16A1 LTR ERVL -3 454 168 228 258 30 0 chr13 310496 310562 -101562607 - MIR SINE MIR -131 131 64 21 0 0 0 chr13 310562 310583 -101562586 + AT_rich Low_complexity Low_complexity 1 21 0 200 236 32 38 chr13 311869 312026 -101561143 + (TTATA)n Simple_repeat Simple_repeat 4 159 0 4583 194 31 28 chr13 312875 313763 -101559406 - MER54A LTR ERVL -1 900 10 722 164 0 0 chr13 314594 314710 -101558459 + AluJb SINE Alu 2 117 -195 1512 314 77 33 chr13 315098 316202 -101556967 + L2 LINE L2 2157 3305 -8 2208 113 0 3 chr13 316347 316640 -101556529 + AluSg SINE Alu 1 292 -18 7274 58 7 0 chr13 317062 318753 -101554416 - L1PA6 LINE L1 -5 6149 4451 3987 120 43 52 chr13 318880 319802 -101553367 - MER11A LTR ERVK -326 910 1 28805 114 17 11 chr13 319803 324103 -101549066 - L1P LINE L1 -1809 4337 13 1596 231 47 42 chr13 324218 324812 -101548357 + L1M4 LINE L1 4629 5225 -921 1241 125 11 0 chr13 324812 324996 -101548173 + AluSg/x SINE Alu 117 302 -10 419 233 35 0 chr13 325080 325252 -101547917 + (TA)n Simple_repeat Simple_repeat 2 179 0 2059 134 10 3 chr13 326895 327201 -101545968 - AluJb SINE Alu -1 311 4 363 235 0 69 chr13 327507 327609 -101545560 + L2 LINE L2 3173 3267 -46 2185 119 0 0 chr13 327645 327948 -101545221 + AluSx SINE Alu 1 303 -9 263 240 80 0 chr13 327978 328053 -101545116 - MIR SINE MIR -70 192 112 189 0 0 0 chr13 328087 328108 -101545061 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1679 169 34 7 chr13 328195 328490 -101544679 + AluJb SINE Alu 1 303 -9 2162 114 0 3 chr13 328802 329101 -101544068 - AluSp SINE Alu -15 298 1 245 27 54 0 chr13 329104 329141 -101544028 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 286 128 85 0 chr13 329144 329191 -101543978 - AluJ/FRAM SINE Alu -23 279 229 28 79 0 0 chr13 331296 331359 -101541810 + AT_rich Low_complexity Low_complexity 1 63 0 389 20 20 0 chr13 331536 331586 -101541583 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 963 74 8 8 chr13 331586 331702 -101541467 - AluY SINE Alu -195 116 1 317 286 63 17 chr13 335805 335980 -101537189 - HERV16 LTR ERVL -2033 2963 2781 492 196 21 0 chr13 337568 337665 -101535504 - MSTA LTR MaLR -329 99 1 4380 232 76 26 chr13 337665 338831 -101534338 - MSTA-int LTR MaLR 0 1651 427 742 235 8 10 chr13 338829 339033 -101534136 - MSTA-int LTR MaLR -1270 101 28 * 606 173 156 10 chr13 339029 339180 -101533989 + MSTA-int LTR MaLR 466 661 -963 * 851 246 52 48 chr13 339188 339497 -101533672 - MSTA LTR MaLR -43 385 76 388 241 12 0 chr13 339501 339584 -101533585 + MSTA-int LTR MaLR 907 990 -590 2056 135 3 0 chr13 339942 340230 -101532939 - AluSc SINE Alu -20 289 1 21 0 0 0 chr13 340591 340612 -101532557 + AT_rich Low_complexity Low_complexity 1 21 0 227 247 25 49 chr13 341236 341317 -101531852 + L2 LINE L2 2967 3045 -227 1192 214 231 18 chr13 342175 342633 -101530536 - L1MC4 LINE L1 -668 7374 6819 270 226 37 48 chr13 343235 343379 -101529790 - HSAT5 Satellite Satellite 0 142 1 273 238 12 18 chr13 343647 343743 -101529426 - HSAT5 Satellite Satellite 0 95 1 265 258 0 15 chr13 344155 344221 -101528948 + (CA)n Simple_repeat Simple_repeat 2 66 0 2087 108 87 44 chr13 344448 344884 -101528285 - SN5 Other centromeric 0 455 1 1084 242 4 8 chr13 345404 345668 -101527501 + MSTA-int LTR MaLR 1389 1651 0 545 146 21 10 chr13 345668 345764 -101527405 + MSTA LTR MaLR 1 97 -331 282 214 18 0 chr13 345849 345905 -101527264 + THE1-int LTR MaLR 911 967 -613 * 700 247 169 50 chr13 345858 346137 -101527032 - THE1-int LTR MaLR -362 1218 907 969 221 62 28 chr13 346141 346430 -101526739 + MSTA LTR MaLR 76 374 -54 317 255 152 9 chr13 346448 346603 -101526566 - MST-int LTR MaLR -963 661 462 6001 233 52 22 chr13 346603 348173 -101524996 + MSTA-int LTR MaLR 34 1651 0 396 221 11 0 chr13 348175 348270 -101524899 + MSTA LTR MaLR 5 100 -328 460 167 23 5 chr13 348426 348530 -101524639 - MSTA LTR MaLR -262 113 3 1251 192 25 47 chr13 348532 348850 -101524319 - MSTA-int LTR MaLR 0 1651 1341 250 236 0 28 chr13 349005 349077 -101524092 - MSTA LTR MaLR -331 97 28 517 168 21 0 chr13 349237 349332 -101523837 - MSTA LTR MaLR -331 97 1 1376 219 3 40 chr13 349332 349679 -101523490 - MSTA-int LTR MaLR 0 1651 1318 279 256 24 37 chr13 349686 349768 -101523401 - MSTA LTR MaLR -273 155 75 431 235 20 0 chr13 349820 349918 -101523251 - MSTA LTR MaLR -328 100 1 5749 224 55 39 chr13 349918 351510 -101521659 - MSTA-int LTR MaLR 0 1651 34 268 294 37 9 chr13 351514 351623 -101521546 + THE1-int LTR MaLR 466 577 -1003 1018 229 67 7 chr13 351665 351949 -101521220 - MSTA LTR MaLR -52 376 76 747 179 191 56 chr13 351953 352204 -101520965 + THE1-int LTR MaLR 907 1191 -389 315 179 18 0 chr13 352192 352248 -101520921 - THE1-int LTR MaLR -613 967 911 * 3871 96 27 4 chr13 352319 352869 -101520300 + LTR6A LTR ERV1 1 563 -1 419 200 21 0 chr13 352900 352995 -101520174 - MSTA LTR MaLR -331 97 1 1280 198 43 49 chr13 352995 353324 -101519845 - MSTA-int LTR MaLR 0 1651 1325 300 248 124 9 chr13 353324 353429 -101519740 - MSTA LTR MaLR -252 176 60 425 247 21 0 chr13 353478 353575 -101519594 - MSTA LTR MaLR -329 99 1 6034 231 65 19 chr13 353575 355125 -101518044 - MSTA-int LTR MaLR 0 1651 28 593 180 156 10 chr13 355121 355272 -101517897 + MST-int LTR MaLR 466 661 -963 * 752 257 49 53 chr13 355280 355564 -101517605 - MSTA LTR MaLR -43 385 103 553 252 208 22 chr13 355705 355931 -101517238 - THE1-int LTR MaLR -406 1174 907 960 247 52 11 chr13 355949 356220 -101516949 + MSTA LTR MaLR 95 376 -52 476 207 164 14 chr13 356248 356388 -101516781 - MST-int LTR MaLR -984 667 507 4628 244 68 25 chr13 356390 357692 -101515477 + MSTA-int LTR MaLR 32 1389 -262 505 216 9 0 chr13 357688 357804 -101515365 + MSTA-int LTR MaLR 1535 1651 0 * 426 189 135 90 chr13 357804 357915 -101515254 + MSTA LTR MaLR 1 116 -248 1970 103 11 0 chr13 357944 358215 -101514954 + LTR6A LTR ERV1 136 409 -155 380 250 50 25 chr13 358315 358435 -101514734 - MSTA LTR MaLR -230 198 76 461 235 30 24 chr13 358439 358672 -101514497 + THE1-int LTR MaLR 907 1187 -393 510 156 21 10 chr13 358805 358901 -101514268 - MSTA LTR MaLR -331 97 1 1383 220 3 41 chr13 358901 359242 -101513927 - MSTA-int LTR MaLR 0 1651 1324 347 213 148 9 chr13 359242 359350 -101513819 - MSTA LTR MaLR -248 180 58 394 253 10 0 chr13 359395 359494 -101513675 - MSTA LTR MaLR -328 100 1 352 160 40 0 chr13 359494 359569 -101513600 - MSTA-int LTR MaLR 0 1651 1574 341 159 0 48 chr13 359571 359634 -101513535 + MSTA LTR MaLR 317 376 -52 258 128 0 0 chr13 359668 359707 -101513462 - MSTA-int LTR MaLR -990 661 623 5551 224 48 48 chr13 359707 361263 -101511906 - MSTA-int LTR MaLR -68 1583 28 508 237 33 26 chr13 361258 361410 -101511759 + THE1-int LTR MaLR 463 615 -965 * 1045 247 56 4 chr13 361429 361696 -101511473 - MSTA LTR MaLR -52 376 96 686 225 191 26 chr13 361720 361951 -101511218 + THE1-int LTR MaLR 907 1175 -405 251 164 36 18 chr13 361953 362008 -101511161 - THE1-int LTR MaLR -614 966 911 242 293 84 42 chr13 364945 365141 -101508028 + MIR3 SINE MIR 4 208 -54 1068 270 22 3 chr13 365477 365799 -101507370 + LTR16C LTR ERVL 135 462 -29 369 345 7 0 chr13 365901 366040 -101507129 - MIR SINE MIR -100 162 23 443 330 133 0 chr13 366184 366402 -101506767 - MIR SINE MIR -1 261 15 378 330 112 8 chr13 367803 368070 -101505099 + L2 LINE L2 2995 3289 -24 1633 196 181 8 chr13 368112 368504 -101504665 + LTR46 LTR ERV1 1 460 0 299 299 140 0 chr13 368505 368612 -101504557 - MIR3 SINE MIR -51 157 36 685 281 57 69 chr13 369020 369457 -101503712 + MLT1K LTR MaLR 76 586 -2 551 153 276 0 chr13 369701 369799 -101503370 - FLAM_C SINE Alu -17 126 2 255 79 0 0 chr13 369866 369904 -101503265 + (TG)n Simple_repeat Simple_repeat 1 38 0 232 309 0 24 chr13 369917 370001 -101503168 + MIR SINE MIR 161 242 -20 200 216 162 0 chr13 370009 370083 -101503086 - L3 LINE CR1 -1430 147 62 21 89 0 0 chr13 370396 370452 -101502717 + AT_rich Low_complexity Low_complexity 1 56 0 1383 191 52 42 chr13 370861 371149 -101502020 + AluJo SINE Alu 1 291 -11 24 53 0 0 chr13 371149 371187 -101501982 + AT_rich Low_complexity Low_complexity 1 38 0 3436 134 20 2 chr13 372879 373387 -101499782 - L1PB1 LINE L1 -4 6147 5631 234 0 0 0 chr13 374283 374309 -101498860 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 812 191 0 0 chr13 374309 374435 -101498734 + AluSg/x SINE Alu 135 260 -50 216 0 0 0 chr13 374435 374459 -101498710 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 526 338 102 3 chr13 374478 374762 -101498407 - L2 LINE L2 -174 3139 2828 268 295 27 36 chr13 374849 374961 -101498208 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 1764 191 23 22 chr13 374962 375336 -101497833 - MLT2C1 LTR ERVL -20 444 1 301 330 71 9 chr13 376520 376632 -101496537 + L2 LINE L2 3151 3269 -3 453 241 54 30 chr13 377203 377369 -101495800 + L1ME4a LINE L1 5950 6119 -2 2011 132 0 14 chr13 377370 377686 -101495483 - AluSx SINE Alu 0 312 1 1992 135 10 0 chr13 378465 378753 -101494416 + AluSg SINE Alu 1 291 -19 8891 114 31 22 chr13 378789 379578 -101493591 - HSMAR1 DNA Mariner 0 1287 481 2138 128 0 0 chr13 379578 379875 -101493294 + AluSx SINE Alu 1 297 -15 8891 114 31 22 chr13 379875 380361 -101492808 - HSMAR1 DNA Mariner -806 481 1 28 61 0 0 chr13 380495 380544 -101492625 + AT_rich Low_complexity Low_complexity 1 49 0 2387 97 0 3 chr13 380596 380906 -101492263 - AluSc SINE Alu 0 309 1 1563 156 52 0 chr13 380961 381262 -101491907 - AluSx SINE Alu 0 315 1 860 211 12 0 chr13 381488 381676 -101491493 - AluSg/x SINE Alu 0 303 114 968 150 36 74 chr13 381809 381923 -101491246 - L1PA16 LINE L1 0 6154 6037 1629 187 3 0 chr13 381923 382217 -101490952 - AluJb SINE Alu -13 299 5 968 150 36 74 chr13 382217 382397 -101490772 - L1PA16 LINE L1 -117 6037 5806 758 143 59 0 chr13 382769 382888 -101490281 - AluJb SINE Alu -185 127 2 745 125 29 0 chr13 383130 383234 -101489935 - U6 snRNA snRNA 0 107 1 4844 213 57 29 chr13 383264 384491 -101488678 - Charlie1a DNA MER1_type -193 1262 1 391 272 32 38 chr13 384790 384948 -101488221 - HERV16 LTR ERVL -4479 517 361 239 54 27 0 chr13 385098 385135 -101488034 + (TA)n Simple_repeat Simple_repeat 2 39 0 630 303 56 8 chr13 385324 385558 -101487611 - LTR16C LTR ERVL -8 483 239 568 276 129 42 chr13 385868 386545 -101486624 + L1ME LINE L1 4955 5704 -460 559 274 88 0 chr13 386603 386812 -101486357 + MIR SINE MIR 28 255 -7 266 241 0 76 chr13 386934 387013 -101486156 + MIR SINE MIR 153 225 -37 855 114 8 0 chr13 387111 387242 -101485927 + L1P4 LINE L1 5317 5448 -715 402 255 84 60 chr13 387257 388046 -101485123 + HSREP522 Satellite telomeric 1 807 -123 204 182 15 61 chr13 388451 388517 -101484652 + (TTGGGG)n Simple_repeat Simple_repeat 2 64 0 205 177 30 79 chr13 389850 390301 -101482868 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 302 191 48 34 chr13 389913 389925 -101483244 + (TA)n Simple_repeat Simple_repeat 2 12 -138 2032 125 3 0 chr13 389925 390213 -101482956 - AluSx SINE Alu -23 289 1 302 191 48 34 chr13 390213 390347 -101482822 + (TA)n Simple_repeat Simple_repeat 12 150 0 25 65 0 0 chr13 391283 391329 -101481840 + AT_rich Low_complexity Low_complexity 1 46 0 207 271 0 0 chr13 391406 391454 -101481715 - L2 LINE L2 -1 3271 3224 194 246 0 49 chr13 391856 391917 -101481252 - L2 LINE L2 -12 3301 3244 459 239 63 28 chr13 391917 392059 -101481110 - MER104 DNA Tc2 0 180 34 1804 169 0 7 chr13 392159 392455 -101480714 + AluJo SINE Alu 1 294 -18 452 280 168 19 chr13 392459 392678 -101480491 - MIR SINE MIR -11 251 4 219 282 122 53 chr13 394360 394491 -101478678 - MER5A DNA MER1_type 0 189 50 334 209 305 38 chr13 394496 394601 -101478568 + FLAM_A SINE Alu 1 133 0 21 57 0 0 chr13 395240 395275 -101477894 + AT_rich Low_complexity Low_complexity 1 35 0 392 275 83 21 chr13 395501 395736 -101477433 + MER102b DNA MER1_type 81 340 -1 21 0 0 0 chr13 396116 396137 -101477032 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 193 28 chr13 396799 396908 -101476261 - L2 LINE L2 0 3272 3146 2189 115 0 0 chr13 397607 397894 -101475275 - AluSc SINE Alu -22 287 1 213 255 0 0 chr13 397928 397975 -101475194 + (TTA)n Simple_repeat Simple_repeat 2 48 0 617 158 167 0 chr13 398830 398944 -101474225 - FLAM_C SINE Alu 0 133 1 622 208 0 0 chr13 399892 399998 -101473171 + U6 snRNA snRNA 1 106 -1 191 325 91 26 chr13 400621 400775 -101472394 - MIR SINE MIR -42 220 57 22 0 0 0 chr13 401262 401284 -101471885 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 401512 401554 -101471615 + AT_rich Low_complexity Low_complexity 1 42 0 2041 195 35 16 chr13 401554 401980 -101471189 - Tigger2a DNA MER2_type 0 434 1 206 139 47 0 chr13 402232 402275 -101470894 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 847 187 0 0 chr13 402602 402741 -101470428 - FAM SINE Alu -25 160 22 1353 167 3 110 chr13 402776 403111 -101470058 - AluJb SINE Alu -13 299 1 2778 190 48 9 chr13 403475 404016 -101469153 - MER68 LTR ERV1 0 562 1 27 0 0 0 chr13 404419 404446 -101468723 + AT_rich Low_complexity Low_complexity 1 27 0 2146 119 7 10 chr13 404569 404879 -101468290 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 404879 404905 -101468264 + AT_rich Low_complexity Low_complexity 1 26 0 1918 150 17 0 chr13 404939 405233 -101467936 - AluSq SINE Alu -14 299 1 2645 155 0 39 chr13 405243 405701 -101467468 - L1MC1 LINE L1 0 6333 5894 836 128 53 0 chr13 406705 406838 -101466331 - Tigger7 DNA MER2_type 0 2587 2448 692 165 44 25 chr13 406839 406997 -101466172 + MER21A LTR ERV1 747 907 -24 629 236 0 24 chr13 407439 407562 -101465607 - FLAM_A SINE Alu -17 125 6 274 332 74 39 chr13 407718 407947 -101465222 - MIR SINE MIR -6 256 20 736 202 0 24 chr13 410960 411084 -101462085 + FLAM_A SINE Alu 1 121 -12 2051 125 0 39 chr13 411320 411625 -101461544 + AluSx SINE Alu 1 293 -19 1245 207 30 54 chr13 411800 412095 -101461074 - AluJb SINE Alu -12 300 13 21 89 0 0 chr13 412191 412247 -101460922 + AT_rich Low_complexity Low_complexity 1 56 0 6731 36 0 0 chr13 412468 413246 -101459923 - L1PA5 LINE L1 -1 6153 5376 213 267 40 0 chr13 413407 413482 -101459687 - MIR SINE MIR -108 154 77 1449 209 57 29 chr13 413509 413859 -101459310 - MER45B DNA AcHobo -236 804 445 868 94 75 13 chr13 414541 414849 -101458320 - LTR7 LTR ERV1 0 450 1 184 307 45 23 chr13 415069 415157 -101458012 - MIR SINE MIR -115 147 58 2065 171 22 16 chr13 417667 418030 -101455139 + MLT1A1 LTR MaLR 1 365 0 283 323 58 74 chr13 419022 419211 -101453958 - MIR SINE MIR -52 210 25 629 207 30 61 chr13 421529 421572 -101451597 - MIR SINE MIR -97 165 122 4582 119 32 32 chr13 421572 422263 -101450906 + LTR8 LTR ERV1 1 691 0 629 207 30 61 chr13 422263 422383 -101450786 - MIR SINE MIR -140 122 7 1658 88 0 0 chr13 422809 423024 -101450145 + L1PA6 LINE L1 5940 6154 0 415 306 48 61 chr13 423257 423486 -101449683 + MIR SINE MIR 11 236 -26 796 216 55 31 chr13 423588 423842 -101449327 + LTR37B LTR ERV1 209 468 0 281 248 40 50 chr13 424209 424310 -101448859 - MLT2E LTR ERVL -497 131 32 437 255 51 83 chr13 424569 424785 -101448384 + MIR SINE MIR 1 209 -53 2191 110 7 0 chr13 424916 425206 -101447963 + AluSq SINE Alu 1 292 -21 2430 87 10 0 chr13 425444 425754 -101447415 + AluSp SINE Alu 1 313 0 1409 176 45 84 chr13 425992 426351 -101446818 + MLT1A1 LTR MaLR 21 365 0 1076 94 6 17 chr13 426662 426842 -101446327 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1665 205 0 3 chr13 426855 427157 -101446012 - AluJo SINE Alu -11 301 1 2767 139 59 12 chr13 427329 427818 -101445351 + L1MB2 LINE L1 5658 6169 -2 29 28 0 0 chr13 428601 428637 -101444532 + AT_rich Low_complexity Low_complexity 1 36 0 7349 17 0 1 chr13 428966 429797 -101443372 - L1PA2 LINE L1 0 6155 5326 4569 196 52 13 chr13 429802 430873 -101442296 - L1 LINE L1 -1524 6041 4929 234 128 0 0 chr13 430877 430916 -101442253 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 * 683 164 30 12 chr13 430910 431075 -101442094 + CT-rich Low_complexity Low_complexity 3 170 0 1190 178 4 35 chr13 431075 431339 -101441830 - AluJo SINE Alu 0 343 87 4313 257 43 15 chr13 431339 433547 -101439622 - L1 LINE L1 -2753 4812 2513 2616 11 0 0 chr13 433547 433829 -101439340 - AluYb8 SINE Alu -4 314 33 4313 257 43 15 chr13 433829 434396 -101438773 - L1 LINE L1 -5052 2513 1963 481 335 55 24 chr13 434593 434847 -101438322 - L1 LINE L1 -4890 1675 1414 411 248 0 19 chr13 434912 435017 -101438152 - L1 LINE L1 -6921 568 466 234 327 47 0 chr13 435164 435271 -101437898 + MIR SINE MIR 80 191 -71 25 65 0 0 chr13 435393 435439 -101437730 + AT_rich Low_complexity Low_complexity 1 46 0 1445 219 47 53 chr13 435716 436251 -101436918 - MER67C LTR ERV1 0 514 22 389 295 83 100 chr13 438036 438588 -101434581 + L1MB4 LINE L1 786 1328 -5521 1257 192 0 48 chr13 440195 440466 -101432703 - AluJb SINE Alu -50 262 5 512 240 89 34 chr13 440468 440647 -101432522 - MLT1D LTR MaLR -312 193 5 660 261 61 0 chr13 441147 441312 -101431857 - MIR SINE MIR -72 190 16 243 152 0 0 chr13 441403 441449 -101431720 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 2201 143 103 137 chr13 442578 443171 -101429998 + LTR4 LTR ERV1 24 596 0 1565 210 10 16 chr13 443213 443527 -101429642 - AluJo SINE Alu 0 312 1 338 243 18 72 chr13 443569 443680 -101429489 - L1ME4a LINE L1 -3 6118 6014 224 228 0 0 chr13 443729 443786 -101429383 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 239 324 27 47 chr13 443797 443945 -101429224 - MIR SINE MIR -1 261 117 522 257 47 65 chr13 444152 444366 -101428803 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 444366 444415 -101428754 + (TG)n Simple_repeat Simple_repeat 1 49 0 2046 115 0 4 chr13 444545 444823 -101428346 + AluSq SINE Alu 9 285 -28 1184 258 14 14 chr13 445398 445759 -101427410 + L1MB4 LINE L1 4075 4435 -2413 * 2793 244 76 12 chr13 445749 446673 -101426496 + L1MB4 LINE L1 5054 6104 -778 2049 124 0 0 chr13 446673 446956 -101426213 + AluSq SINE Alu 3 285 -28 2793 244 76 12 chr13 446956 447597 -101425572 + L1MB4 LINE L1 6104 6702 -180 608 238 60 12 chr13 447609 447777 -101425392 + L1M4 LINE L1 4690 4865 -1281 517 271 54 0 chr13 447797 447963 -101425206 + L1MB4 LINE L1 6708 6882 0 9974 196 44 27 chr13 448073 450116 -101423053 + L1MA4 LINE L1 2128 4808 -1492 2121 101 18 4 chr13 450116 450417 -101422752 + AluSg SINE Alu 1 305 0 9974 196 44 27 chr13 450417 451191 -101421978 + L1MA4 LINE L1 4808 5567 -733 666 225 5 52 chr13 451189 451380 -101421789 - L1M4 LINE L1 -6355 187 6 * 2717 184 4 2 chr13 451521 452006 -101421163 + L1MA4 LINE L1 5620 6105 -195 398 276 94 0 chr13 452064 452234 -101420935 + L1M4 LINE L1 2473 2658 -3488 5617 235 64 28 chr13 452239 454258 -101418911 + L1M4 LINE L1 2700 4791 -1355 311 0 26 0 chr13 454259 454298 -101418871 + (TA)n Simple_repeat Simple_repeat 1 40 0 250 368 40 8 chr13 454650 454775 -101418394 + L2 LINE L2 3142 3270 -2 594 202 17 6 chr13 454863 455036 -101418133 + GA-rich Low_complexity Low_complexity 3 177 0 2474 156 20 0 chr13 455112 455509 -101417660 + MSTA-int LTR MaLR 1247 1651 0 2062 145 89 8 chr13 455534 455906 -101417263 + MSTA LTR MaLR 27 428 0 24 53 0 0 chr13 456004 456042 -101417127 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 456159 456189 -101416980 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr13 456839 456880 -101416289 + AT_rich Low_complexity Low_complexity 1 41 0 2786 13 0 3 chr13 457705 458016 -101415153 + AluYa5 SINE Alu 1 310 -1 2509 65 0 3 chr13 458327 458637 -101414532 + AluY SINE Alu 1 309 -2 24 77 0 0 chr13 458664 458716 -101414453 + AT_rich Low_complexity Low_complexity 1 52 0 4059 190 33 21 chr13 458771 460340 -101412829 - L1MB1 LINE L1 -45 6123 4545 312 27 0 0 chr13 460963 461000 -101412169 + (CA)n Simple_repeat Simple_repeat 2 38 0 33 43 0 0 chr13 463199 463246 -101409923 + AT_rich Low_complexity Low_complexity 1 47 0 1471 201 14 10 chr13 463888 464181 -101408988 + AluJb SINE Alu 3 296 -16 496 182 0 0 chr13 464540 464612 -101408557 - MER58A DNA MER1_type -1 223 152 496 250 0 9 chr13 464612 464728 -101408441 - MER58A DNA MER1_type 0 115 1 367 333 57 13 chr13 464865 465024 -101408145 + L2 LINE L2 2819 2984 -329 2648 174 99 36 chr13 465258 465923 -101407246 - MER39 LTR ERV1 0 707 1 262 209 22 143 chr13 466736 466827 -101406342 - MER77 LTR ERV1 -515 90 11 225 152 22 0 chr13 466837 466883 -101406286 + HAL1 LINE L1 2327 2373 -134 27 49 0 0 chr13 467893 467934 -101405235 + AT_rich Low_complexity Low_complexity 1 41 0 2332 68 0 40 chr13 469210 469532 -101403637 - AluY SINE Alu -2 309 1 751 213 38 47 chr13 469581 469816 -101403353 + pTR5 LTR ERV1 743 975 -1463 3408 94 78 166 chr13 470030 470784 -101402385 + LTR12 LTR ERV1 1 688 0 225 0 0 0 chr13 471792 471817 -101401352 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2564 183 55 6 chr13 471977 472469 -101400700 - MLT2B1 LTR ERVL -4 516 1 22 35 0 0 chr13 473085 473114 -101400055 + AT_rich Low_complexity Low_complexity 1 29 0 2353 64 3 14 chr13 473277 473573 -101399596 + AluY SINE Alu 1 293 -18 1155 283 89 15 chr13 473659 474062 -101399107 + LTR16A LTR ERVL 17 449 -1 263 297 22 72 chr13 474062 474200 -101398969 + MER94 DNA DNA 4 134 0 357 319 48 24 chr13 474222 474388 -101398781 + MIR SINE MIR 63 232 -30 * 364 274 61 17 chr13 474384 474513 -101398656 - MIR SINE MIR -63 145 37 650 302 32 29 chr13 474621 474899 -101398270 - MLT1K LTR MaLR -10 578 300 829 319 88 0 chr13 474994 475314 -101397855 + L2 LINE L2 1321 1668 -1646 231 255 89 76 chr13 476077 476234 -101396935 - MIR SINE MIR -44 218 60 335 320 138 57 chr13 476308 476786 -101396383 + MLT1F LTR MaLR 18 534 -8 256 331 24 24 chr13 476918 477042 -101396127 + MIR SINE MIR 29 152 -110 21 89 0 0 chr13 477099 477155 -101396014 + AT_rich Low_complexity Low_complexity 1 56 0 303 319 34 8 chr13 477239 477358 -101395811 - L2 LINE L2 0 3313 3192 4496 256 68 41 chr13 478397 481211 -101391958 + L1M4 LINE L1 2 2991 -3653 593 219 103 0 chr13 481266 481421 -101391748 + L1M4 LINE L1 4026 4196 -2448 6378 226 19 8 chr13 481436 482862 -101390307 + L1PA16 LINE L1 5 1257 -5592 301 170 0 0 chr13 482857 482904 -101390265 - L1PA15-16 LINE L1 -5691 1158 1112 * 2562 100 5 24 chr13 482915 483286 -101389883 - THE1B LTR MaLR 0 364 1 9766 118 17 29 chr13 483286 484752 -101388417 - THE1B-int LTR MaLR 0 1580 133 5091 188 15 20 chr13 484746 486320 -101386849 + L1PA16 LINE L1 5302 6864 -5 * 689 233 28 40 chr13 486325 486578 -101386591 + L1M4 LINE L1 4204 4453 -2191 2535 188 13 15 chr13 486597 487284 -101385885 + L1M4 LINE L1 5592 6277 -405 4842 95 28 0 chr13 487664 487885 -101385284 + L1PA13 LINE L1 5414 5627 -536 2581 107 0 27 chr13 487885 488259 -101384910 - THE1B LTR MaLR 0 364 1 4842 95 28 0 chr13 488259 488760 -101384409 + L1PA13 LINE L1 5627 6156 -7 201 147 0 0 chr13 489037 489071 -101384098 + (TG)n Simple_repeat Simple_repeat 1 34 0 264 178 68 27 chr13 491286 491359 -101381810 - L1ME4a LINE L1 -78 6043 5968 1993 201 8 2 chr13 491365 491763 -101381406 - L1PA16 LINE L1 -3 6163 5764 1103 243 73 64 chr13 492171 492619 -101380550 + MLT1C LTR MaLR 3 462 -5 189 0 0 0 chr13 492650 492671 -101380498 + (CCAA)n Simple_repeat Simple_repeat 4 24 0 2136 67 0 39 chr13 493258 493543 -101379626 + AluY SINE Alu 38 311 0 201 176 0 0 chr13 493601 493635 -101379534 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 304 270 40 43 chr13 495041 495246 -101377923 - MIR SINE MIR 0 262 8 196 313 15 30 chr13 495457 495524 -101377645 - MIR SINE MIR -15 247 182 2449 69 0 10 chr13 495805 496108 -101377061 - AluY SINE Alu -11 300 1 318 303 113 21 chr13 496531 496769 -101376400 - MIR SINE MIR 0 262 3 243 0 0 0 chr13 497786 497813 -101375356 + (A)n Simple_repeat Simple_repeat 1 27 0 1117 72 0 0 chr13 498946 499085 -101374084 + AluY SINE Alu 156 294 -17 306 338 29 43 chr13 499877 500016 -101373153 - MER5A DNA MER1_type -1 188 52 1850 138 32 11 chr13 500120 500403 -101372766 + AluSg SINE Alu 1 289 -21 1985 140 64 3 chr13 500637 500980 -101372189 - THE1B LTR MaLR 0 364 1 1369 209 21 78 chr13 501114 501501 -101371668 + MLT1A1 LTR MaLR 1 365 0 250 315 28 42 chr13 503239 503382 -101369787 + HAL1b LINE L1 245 385 -963 1032 306 70 30 chr13 503499 504396 -101368773 + L1MEc LINE L1 150 1245 -4868 488 229 118 79 chr13 504417 504722 -101368447 + L1MEc LINE L1 1440 1756 -4640 3433 29 0 17 chr13 504727 505147 -101368022 - L1PA4 LINE L1 -3 6152 5740 237 54 27 0 chr13 505147 505184 -101367985 + L1P LINE L1 4890 4927 -1219 2321 114 0 0 chr13 505228 505535 -101367634 + AluSg SINE Alu 1 307 -3 4963 170 8 22 chr13 505715 506891 -101366278 - L1PA16 LINE L1 -1 6165 5007 813 271 65 23 chr13 506939 507016 -101366153 + L1MEc LINE L1 1974 2046 -4169 3285 243 41 30 chr13 507016 507147 -101366022 - Tigger6a DNA MER2_type -514 1083 955 1731 192 3 7 chr13 507147 507454 -101365715 + AluJb SINE Alu 1 306 -6 3285 243 41 30 chr13 507454 508392 -101364777 - Tigger6a DNA MER2_type -642 955 2 813 271 65 23 chr13 508392 509070 -101364099 + L1MEc LINE L1 2046 2732 -3483 1749 242 37 69 chr13 510206 510800 -101362369 - MER77 LTR ERV1 -6 599 25 472 213 22 0 chr13 510810 510946 -101362223 + CT-rich Low_complexity Low_complexity 2 140 0 1303 235 47 72 chr13 511041 511312 -101361857 + MLT1D LTR MaLR 5 258 -247 2150 102 7 7 chr13 511312 511605 -101361564 + AluSc SINE Alu 1 293 -16 1303 235 47 72 chr13 511605 511847 -101361322 + MLT1D LTR MaLR 258 505 0 1600 209 0 10 chr13 512834 513136 -101360033 + AluJo SINE Alu 11 309 -3 1499 214 51 2 chr13 514311 514704 -101358465 + MER54A LTR ERVL 1 412 -489 2072 118 74 15 chr13 514713 515051 -101358118 + THE1B LTR MaLR 7 364 0 1236 253 46 10 chr13 515089 515504 -101357665 + MER54A LTR ERVL 472 901 0 189 0 0 0 chr13 516220 516241 -101356928 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 22 35 0 0 chr13 516308 516337 -101356832 + AT_rich Low_complexity Low_complexity 1 29 0 9971 31 1 0 chr13 516337 518304 -101354865 - L1PA2 LINE L1 0 6155 4190 13436 40 1 0 chr13 518304 520048 -101353121 + L1PA2 LINE L1 2440 4185 -1961 26 0 0 0 chr13 520136 520162 -101353007 + AT_rich Low_complexity Low_complexity 1 26 0 317 263 26 20 chr13 520277 520429 -101352740 + (TA)n Simple_repeat Simple_repeat 1 153 0 31 58 0 0 chr13 520586 520638 -101352531 + AT_rich Low_complexity Low_complexity 1 52 0 2212 187 91 11 chr13 521204 521754 -101351415 + LTR49 LTR ERV1 1 594 -1 1775 163 58 21 chr13 521938 522367 -101350802 + LTR56 LTR ERV1 1 445 0 461 246 144 5 chr13 522507 522694 -101350475 - MER20 DNA MER1_type -3 216 4 25 51 0 0 chr13 523180 523219 -101349950 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr13 523246 523281 -101349888 + AT_rich Low_complexity Low_complexity 1 35 0 1391 181 87 56 chr13 523674 523705 -101349464 + LTR49 LTR ERV1 1 30 -565 2017 122 7 4 chr13 523705 523984 -101349185 - AluSq SINE Alu -20 293 14 1391 181 87 56 chr13 523984 524366 -101348803 + LTR49 LTR ERV1 30 427 -168 232 164 14 14 chr13 524400 524473 -101348696 + (TA)n Simple_repeat Simple_repeat 2 74 0 765 150 23 0 chr13 525738 525871 -101347298 + MSTB1 LTR MaLR 1 136 -296 731 320 64 63 chr13 525952 526832 -101346337 - L1MEc LINE L1 -4983 1222 351 361 233 39 23 chr13 526957 527086 -101346083 - L1MEc LINE L1 -6211 185 55 24 0 0 0 chr13 527340 527364 -101345805 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 527480 527501 -101345668 + AT_rich Low_complexity Low_complexity 1 21 0 252 300 70 19 chr13 527650 527860 -101345309 - L1MCa LINE L1 -4641 2080 1657 328 272 108 52 chr13 527908 528121 -101345048 - L1MCa LINE L1 -4802 1738 1514 198 0 0 0 chr13 528204 528226 -101344943 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 40398 56 3 2 chr13 528226 534356 -101338813 - L1PA4 LINE L1 -13 6142 9 695 126 7 0 chr13 534379 543990 -101329179 - CER Satellite Satellite 0 9671 1 1215 49 0 19 chr13 543995 544157 -101329012 + L1PA4 LINE L1 5996 6154 -1 22 0 0 0 chr13 544157 544179 -101328990 + AT_rich Low_complexity Low_complexity 1 22 0 2153 124 3 10 chr13 544517 544824 -101328345 + AluSp SINE Alu 1 305 -8 2051 119 10 0 chr13 544861 545156 -101328013 - AluSx SINE Alu -14 298 1 1370 180 26 16 chr13 546062 546490 -101326679 + MER67C LTR ERV1 218 709 -1 2219 174 16 5 chr13 546980 547412 -101325757 + LTR56 LTR ERV1 9 445 0 1996 127 3 3 chr13 549136 549419 -101323750 + AluSp SINE Alu 1 283 -30 252 216 18 108 chr13 549503 549614 -101323555 + MIR SINE MIR 153 253 -9 235 331 162 7 chr13 549831 549979 -101323190 + MER5A DNA MER1_type 19 189 0 2247 98 0 29 chr13 550833 551148 -101322021 + AluSx SINE Alu 1 306 -6 429 216 92 60 chr13 551480 551698 -101321471 - L1MC4 LINE L1 -537 7505 7281 357 342 161 0 chr13 551844 552005 -101321164 + MER5A DNA MER1_type 2 188 -1 203 413 0 0 chr13 553251 553326 -101319843 + L2 LINE L2 2742 2816 -498 22 35 0 0 chr13 553779 553808 -101319361 + AT_rich Low_complexity Low_complexity 1 29 0 3851 232 51 17 chr13 553883 556001 -101317168 - L1MA9 LINE L1 -25 6175 3981 451 288 31 18 chr13 556006 556169 -101317000 - L1MA9 LINE L1 -5090 865 701 481 353 20 5 chr13 556300 556501 -101316668 - L1MA9 LINE L1 -5404 551 348 1868 103 4 8 chr13 556510 556772 -101316397 - AluSq SINE Alu -52 261 1 1681 202 51 33 chr13 556990 557045 -101316124 - L1MB2 LINE L1 -18 7572 7519 1226 243 7 10 chr13 557045 557333 -101315836 + AluJo SINE Alu 2 288 -24 1681 202 51 33 chr13 557333 557748 -101315421 - L1MB2 LINE L1 -71 7519 7092 204 125 62 0 chr13 557748 557796 -101315373 + (TA)n Simple_repeat Simple_repeat 1 51 0 324 124 66 0 chr13 557813 557950 -101315219 + (TA)n Simple_repeat Simple_repeat 2 147 0 33 25 0 0 chr13 558091 558131 -101315038 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 558177 558199 -101314970 + AT_rich Low_complexity Low_complexity 1 22 0 1280 276 86 20 chr13 558218 559053 -101314116 - L1MB2 LINE L1 -607 6983 6095 784 285 40 53 chr13 559183 559334 -101313835 - L1MB2 LINE L1 -3262 4303 4151 1327 206 33 11 chr13 559334 559610 -101313559 - AluJb SINE Alu -30 282 1 784 285 40 53 chr13 559610 559740 -101313429 - L1MB2 LINE L1 -3414 4151 4021 1931 218 36 2 chr13 559740 560152 -101313017 + MSTB LTR MaLR 1 426 0 784 285 40 53 chr13 560152 560525 -101312644 - L1MB2 LINE L1 -3544 4021 3657 478 185 0 0 chr13 560525 560606 -101312563 - AluJ/FLAM SINE Alu -228 84 4 509 271 66 35 chr13 560690 561056 -101312113 - L1MB2 LINE L1 -3922 3645 3269 1983 125 0 4 chr13 561066 561382 -101311787 - AluSg1 SINE Alu 0 317 3 511 259 0 9 chr13 561640 561756 -101311413 - FLAM_C SINE Alu -28 115 1 270 254 9 45 chr13 561757 561867 -101311302 - L1MB2 LINE L1 -4573 2992 2887 369 264 26 109 chr13 561907 562076 -101311093 - L1MB2 LINE L1 -5031 2536 2382 2231 78 0 3 chr13 562076 562403 -101310766 - AluY SINE Alu 0 326 1 369 264 26 109 chr13 562403 562425 -101310744 - L1MB2 LINE L1 -5185 2382 2360 1111 267 54 43 chr13 562816 563112 -101310057 - L1MB2 LINE L1 -27 6380 6089 1835 143 17 10 chr13 563112 563405 -101309764 - AluSp SINE Alu -18 295 1 1111 267 54 43 chr13 563405 563549 -101309620 - L1MB2 LINE L1 -318 6089 5932 2131 108 0 7 chr13 563549 563845 -101309324 + AluY SINE Alu 1 294 -17 1111 267 54 43 chr13 563845 563868 -101309301 - L1MB2 LINE L1 -475 5932 5911 737 264 52 18 chr13 563871 564200 -101308969 - L1MB2 LINE L1 -1296 5086 4747 586 287 106 70 chr13 564203 564493 -101308676 - L1MB2 LINE L1 -3245 3137 2859 1788 146 33 0 chr13 564493 564767 -101308402 - AluSx SINE Alu -18 294 12 586 287 106 70 chr13 564767 564792 -101308377 - L1MB2 LINE L1 -3523 2859 2836 2126 112 10 0 chr13 564792 565097 -101308072 - AluY SINE Alu -3 308 1 586 287 106 70 chr13 565097 566535 -101306634 - L1MB2 LINE L1 -3546 2836 1314 1251 232 21 7 chr13 566535 566819 -101306350 - AluJb SINE Alu -24 288 1 586 287 106 70 chr13 566819 566847 -101306322 - L1MB2 LINE L1 -5068 1314 1288 357 313 143 24 chr13 566849 567185 -101305984 - L1MB2 LINE L1 -4862 1451 1076 849 162 37 11 chr13 571666 571857 -101301312 - L1MA3 LINE L1 0 6305 6110 1928 156 0 7 chr13 572491 572798 -101300371 - AluSg SINE Alu -1 309 5 2054 136 0 0 chr13 573491 573778 -101299391 + AluSc SINE Alu 7 293 -16 565 213 173 4 chr13 574521 574746 -101298423 - L1MA8 LINE L1 -4 6287 6025 4118 230 80 30 chr13 574757 576499 -101296670 - L1MA8 LINE L1 -359 5941 4081 2085 116 3 0 chr13 576499 576793 -101296376 + AluY SINE Alu 1 295 -16 4118 230 80 30 chr13 576793 576988 -101296181 - L1MA8 LINE L1 -2219 4081 3897 5229 273 48 16 chr13 576999 578454 -101294715 + L1 LINE L1 3310 4842 -1304 198 0 0 0 chr13 578454 578476 -101294693 + (CA)n Simple_repeat Simple_repeat 2 23 0 5229 273 48 16 chr13 578476 578932 -101294237 + L1 LINE L1 4842 5282 -864 3650 203 39 17 chr13 578935 579753 -101293416 + L1PA16 LINE L1 5317 6152 -14 1026 152 162 0 chr13 579962 580160 -101293009 - MER30 DNA MER1_type 0 230 1 24 67 0 0 chr13 580789 580834 -101292335 + AT_rich Low_complexity Low_complexity 1 45 0 1200 126 6 0 chr13 581154 581328 -101291841 - AluSx SINE Alu -137 175 1 2337 82 0 3 chr13 582651 582957 -101290212 + AluY SINE Alu 1 305 -6 21 36 0 0 chr13 583161 583189 -101289980 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 583329 583350 -101289819 + AT_rich Low_complexity Low_complexity 1 21 0 3522 30 0 5 chr13 583465 583894 -101289275 - L1P LINE L1 -942 5204 4778 2806 21 0 0 chr13 583894 584221 -101288948 + L1PA2 LINE L1 5829 6155 0 2000 138 0 0 chr13 584565 584856 -101288313 - AluSq SINE Alu -22 291 1 21 71 0 0 chr13 584958 585000 -101288169 + AT_rich Low_complexity Low_complexity 1 42 0 7741 98 4 1 chr13 585055 586123 -101287046 + MER11C LTR ERVK 1 1071 0 1948 136 3 10 chr13 586687 586988 -101286181 - AluSq SINE Alu -14 299 1 310 173 0 0 chr13 587100 587152 -101286017 - MER51D LTR ERV1 -106 551 500 6522 156 18 7 chr13 588227 589371 -101283798 - THE1C-int LTR MaLR -158 1422 215 359 215 0 0 chr13 589371 589436 -101283733 - THE1C-int LTR MaLR -1515 65 1 1710 148 51 46 chr13 589436 589808 -101283361 - THE1C LTR MaLR 0 375 2 1984 104 32 26 chr13 590321 590630 -101282539 - AluY SINE Alu 0 311 1 12722 46 1 1 chr13 591420 593767 -101279402 - L1PA5 LINE L1 -9 6145 3797 1027 238 88 68 chr13 593942 594356 -101278813 - MLT1C LTR MaLR 0 467 42 1657 193 5 63 chr13 594356 594399 -101278770 + MLT1A1 LTR MaLR 5 49 -316 1996 110 35 21 chr13 594399 594689 -101278480 - AluSx SINE Alu -18 294 1 1657 193 5 63 chr13 594689 595028 -101278141 + MLT1A1 LTR MaLR 49 365 0 1027 238 88 68 chr13 595028 595066 -101278103 - MLT1C LTR MaLR -425 42 6 24 53 0 0 chr13 595341 595379 -101277790 + AT_rich Low_complexity Low_complexity 1 38 0 200 232 43 0 chr13 595421 595490 -101277679 + (TG)n Simple_repeat Simple_repeat 1 72 0 286 313 73 10 chr13 595559 595655 -101277514 - L2 LINE L2 -20 3252 3151 2129 106 0 0 chr13 595933 596247 -101276922 + L1PA7 LINE L1 5846 6159 0 23 33 0 0 chr13 596318 596348 -101276821 + AT_rich Low_complexity Low_complexity 1 30 0 882 316 63 29 chr13 597645 598135 -101275034 - LTR33 LTR ERVL -12 509 3 505 276 131 67 chr13 598571 598976 -101274193 - LTR33A LTR ERVL -92 431 1 242 281 152 30 chr13 599619 599783 -101273386 + MIR3 SINE MIR 16 199 -9 23 0 0 0 chr13 600228 600251 -101272918 + AT_rich Low_complexity Low_complexity 1 23 0 915 155 53 63 chr13 600764 600970 -101272199 - L1PA16 LINE L1 0 6166 5963 2184 125 0 0 chr13 601185 601480 -101271689 + AluSg SINE Alu 1 295 -15 207 0 0 0 chr13 602915 602938 -101270231 + (TCC)n Simple_repeat Simple_repeat 2 24 0 28 48 0 0 chr13 603059 603101 -101270068 + AT_rich Low_complexity Low_complexity 1 42 0 2089 289 57 43 chr13 603803 604509 -101268660 + L2 LINE L2 1710 2430 -884 519 276 74 0 chr13 604509 604672 -101268497 - MER96 DNA MER1_type 0 175 1 2089 289 57 43 chr13 604672 604775 -101268394 + L2 LINE L2 2430 2530 -784 1536 209 6 3 chr13 604941 605260 -101267909 - L1MC2 LINE L1 -1 6343 6024 233 337 45 11 chr13 605617 605706 -101267463 + L2 LINE L2 3125 3216 -56 269 26 26 0 chr13 608745 608783 -101264386 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 10798 43 5 38 chr13 608785 608871 -101264298 - SVA Other Other -3 1383 1 10798 45 5 40 chr13 608871 610264 -101262905 - SVA Other Other -42 1344 1 248 252 35 87 chr13 613721 613836 -101259333 - MIR SINE MIR -42 220 112 293 333 6 51 chr13 615820 615976 -101257193 + MIR3 SINE MIR 55 203 -5 506 103 0 13 chr13 616468 616546 -101256623 + MADE1 DNA Mariner 1 77 -3 648 258 6 0 chr13 616847 617006 -101256163 + MER5B DNA MER1_type 1 160 -18 665 219 55 7 chr13 617829 617975 -101255194 + L1MC4a LINE L1 6604 6756 -1052 444 296 29 6 chr13 618631 618803 -101254366 + L1MC4 LINE L1 7724 7899 -143 240 222 0 0 chr13 618880 618925 -101254244 + L1ME3A LINE L1 5625 5669 -501 381 249 52 55 chr13 619417 619706 -101253463 + L1ME3A LINE L1 5657 5990 -180 1590 199 0 7 chr13 620110 620392 -101252777 - AluJb SINE Alu -30 282 3 1336 243 0 24 chr13 620426 620722 -101252447 + AluJo SINE Alu 1 289 -23 2392 94 0 0 chr13 620916 621214 -101251955 + AluY SINE Alu 1 298 -13 265 183 195 12 chr13 622081 622163 -101251006 - MER5A DNA MER1_type -83 106 10 288 137 0 0 chr13 623427 623478 -101249691 + (CA)n Simple_repeat Simple_repeat 1 51 0 2228 98 0 7 chr13 623599 623895 -101249274 + AluSg1 SINE Alu 1 294 -15 486 343 94 4 chr13 626398 626524 -101246645 - MIR SINE MIR -8 254 141 7315 69 51 1 chr13 626524 627447 -101245722 - LTR5 LTR ERVK 0 969 1 486 343 94 4 chr13 627447 627553 -101245616 - MIR SINE MIR -121 141 1 571 257 14 0 chr13 627659 627807 -101245362 - MIR SINE MIR 0 262 113 1860 118 0 0 chr13 630594 630840 -101242329 + AluSq SINE Alu 1 246 -67 2168 122 3 3 chr13 631121 631424 -101241745 - AluSx SINE Alu -8 304 2 313 317 32 16 chr13 631507 631630 -101241539 - MIR SINE MIR -65 143 19 777 200 36 12 chr13 632565 632730 -101240439 + MER45A DNA AcHobo 10 178 0 338 341 28 23 chr13 632750 632926 -101240243 - MIR3 SINE MIR -16 192 16 266 330 71 9 chr13 634825 634937 -101238232 - L2 LINE L2 -3 3269 3151 2235 104 3 0 chr13 635798 636095 -101237074 - AluY SINE Alu -13 298 1 1791 151 7 7 chr13 636251 636536 -101236633 + AluSx SINE Alu 1 285 -27 228 111 0 0 chr13 636537 636573 -101236596 + (CA)n Simple_repeat Simple_repeat 2 37 0 729 162 5 136 chr13 636836 637027 -101236142 - FAM SINE Alu -9 40 1 288 96 96 0 chr13 637036 637088 -101236081 + Charlie7 DNA MER1_type 2556 2612 0 255 331 54 0 chr13 637244 637373 -101235796 + L1MC/D LINE L1 5497 5635 -486 1155 136 10 40 chr13 637373 637571 -101235598 - AluSg/x SINE Alu -12 297 106 188 67 33 0 chr13 637571 637601 -101235568 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 28 61 0 0 chr13 638524 638573 -101234596 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 644214 644235 -101228934 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 644272 644293 -101228876 + AT_rich Low_complexity Low_complexity 1 21 0 1670 191 3 13 chr13 644528 644832 -101228337 - AluSx SINE Alu -11 301 1 1921 126 25 0 chr13 646004 646309 -101226860 + AluSx SINE Alu 1 312 0 2726 268 65 25 chr13 646309 647637 -101225532 + L1M4 LINE L1 3130 4511 -1635 2093 286 71 50 chr13 647635 649079 -101224090 + L1 LINE L1 17 1429 -6136 * 1981 153 0 0 chr13 649079 649361 -101223808 + AluSx SINE Alu 1 282 -30 279 0 0 0 chr13 649364 649395 -101223774 + (CA)n Simple_repeat Simple_repeat 1 31 0 2093 286 71 50 chr13 649395 649619 -101223550 + L1 LINE L1 1430 2389 -5176 * 3383 183 19 84 chr13 649602 650260 -101222909 + L1 LINE L1 5405 5986 -1579 2269 114 0 0 chr13 650260 650568 -101222601 + AluSg SINE Alu 1 308 -2 3383 183 19 84 chr13 650568 650844 -101222325 + L1 LINE L1 5986 6278 -1287 207 0 0 0 chr13 650844 650867 -101222302 + (T)n Simple_repeat Simple_repeat 1 23 0 1325 209 11 28 chr13 651428 651715 -101221454 + AluJo SINE Alu 1 282 -30 23 78 0 0 chr13 653054 653105 -101220064 + AT_rich Low_complexity Low_complexity 1 51 0 37 39 0 0 chr13 653674 653725 -101219444 + AT_rich Low_complexity Low_complexity 1 51 0 2339 70 0 0 chr13 655417 655701 -101217468 - AluYa5 SINE Alu -9 302 19 1716 213 54 16 chr13 655701 656188 -101216981 + L1 LINE L1 6263 6767 -814 359 237 79 54 chr13 658274 658687 -101214482 + HSREP522 Satellite telomeric 1 423 -112 360 256 0 25 chr13 659885 660006 -101213163 + CT-rich Low_complexity Low_complexity 3 120 0 1515 177 22 4 chr13 661235 661506 -101211663 + LOR1-int LTR ERV1 2079 2354 -3592 888 157 38 22 chr13 661505 661690 -101211479 + LOR1-int LTR ERV1 1839 2026 -6094 * 1551 137 26 26 chr13 661690 661961 -101211208 - AluSx SINE Alu -36 276 6 3663 201 59 82 chr13 661977 663571 -101209598 - L1MEc LINE L1 -2865 4700 3142 261 0 0 0 chr13 663630 663659 -101209510 + (CA)n Simple_repeat Simple_repeat 2 30 0 212 337 0 23 chr13 663680 663766 -101209403 + L2 LINE L2 3188 3271 -1 6333 110 21 21 chr13 663854 664998 -101208171 - L1PA12 LINE L1 0 6168 5026 2924 194 7 4 chr13 664998 665560 -101207609 + L1PA12 LINE L1 4461 5024 -1122 426 273 35 41 chr13 665688 665860 -101207309 - L1MEc LINE L1 -6170 1576 1406 566 285 39 0 chr13 665904 666111 -101207058 + L1M4 LINE L1 2335 2549 -3597 * 2583 210 43 3 chr13 666107 666689 -101206480 + L1PB2 LINE L1 3795 4399 -1747 406 146 47 19 chr13 666689 666909 -101206260 + (TA)n Simple_repeat Simple_repeat 1 226 0 5662 169 27 15 chr13 666911 668303 -101204866 + L1PB2 LINE L1 4413 5832 -319 2051 159 0 0 chr13 668303 668611 -101204558 + AluSq SINE Alu 1 308 -5 5662 169 27 15 chr13 668611 668934 -101204235 + L1PB2 LINE L1 5832 6149 -2 385 299 80 25 chr13 668928 669252 -101203917 + L1M4 LINE L1 2538 2879 -3267 * 309 26 0 0 chr13 669297 669335 -101203834 + (TG)n Simple_repeat Simple_repeat 2 39 0 528 279 53 4 chr13 669404 669666 -101203503 - L1M4 LINE L1 -2982 3164 2890 398 208 75 0 chr13 669720 669840 -101203329 + L1MC4 LINE L1 7914 8042 0 361 316 105 55 chr13 669882 670310 -101202859 + L1M4 LINE L1 3812 4280 -1866 2143 127 0 0 chr13 670310 670610 -101202559 + AluSg1 SINE Alu 1 300 -9 361 316 105 55 chr13 670610 670779 -101202390 + L1M4 LINE L1 4280 4439 -1707 2016 133 7 3 chr13 670903 671205 -101201964 - AluSx SINE Alu -9 303 1 21 0 0 0 chr13 671376 671397 -101201772 + AT_rich Low_complexity Low_complexity 1 21 0 2327 81 7 0 chr13 671518 671815 -101201354 - AluY SINE Alu -12 299 1 21 0 0 0 chr13 672531 672552 -101200617 + AT_rich Low_complexity Low_complexity 1 21 0 4120 115 7 7 chr13 673688 674252 -101198917 - LTR6A LTR ERV1 0 564 1 617 239 222 0 chr13 674584 674764 -101198405 + MER58A DNA MER1_type 1 220 -4 30 0 0 0 chr13 676872 676902 -101196267 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr13 677527 677547 -101195622 + (CATA)n Simple_repeat Simple_repeat 2 21 0 23 54 0 0 chr13 678494 678531 -101194638 + AT_rich Low_complexity Low_complexity 1 37 0 620 363 28 15 chr13 678801 679126 -101194043 + LTR16A LTR ERVL 110 438 -12 2524 173 29 0 chr13 679743 680159 -101193010 + MSTA LTR MaLR 1 428 0 233 182 18 0 chr13 680350 680405 -101192764 + GA-rich Low_complexity Low_complexity 2 57 0 423 0 0 0 chr13 680564 680611 -101192558 + (TG)n Simple_repeat Simple_repeat 2 48 0 221 182 0 45 chr13 680668 680734 -101192435 + CT-rich Low_complexity Low_complexity 2 64 0 401 261 57 51 chr13 680807 680964 -101192205 - MLT1G1 LTR MaLR -8 587 430 2464 46 0 0 chr13 681095 681376 -101191793 + L1PA5 LINE L1 5874 6154 0 193 269 301 0 chr13 681612 681705 -101191464 + MIR SINE MIR 20 140 -122 1944 201 39 31 chr13 681711 682253 -101190916 - MLT2A2 LTR ERVL 0 554 1 214 216 134 62 chr13 682257 682354 -101190815 + MIR SINE MIR 144 247 -15 503 338 85 52 chr13 682798 683410 -101189759 - L2 LINE L2 -954 2360 1729 249 128 0 0 chr13 685258 685305 -101187864 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2203 110 7 7 chr13 686050 686358 -101186811 + MLT2A2 LTR ERVL 1 308 -145 2136 109 7 13 chr13 687180 687482 -101185687 - AluSx SINE Alu -12 300 1 860 241 0 0 chr13 688605 688771 -101184398 - MER2 DNA MER2_type -179 166 1 525 16 0 0 chr13 688788 688850 -101184319 + (CA)n Simple_repeat Simple_repeat 2 63 0 314 301 12 0 chr13 689064 689147 -101184022 + L2 LINE L2 3186 3269 -3 36 23 0 0 chr13 689148 689191 -101183978 + AT_rich Low_complexity Low_complexity 1 43 0 219 164 16 33 chr13 689301 689362 -101183807 + (TTAAA)n Simple_repeat Simple_repeat 4 63 0 348 322 127 39 chr13 689748 690080 -101183089 - L3 LINE CR1 -910 667 307 984 199 23 14 chr13 690160 690381 -101182788 - AluJo SINE Alu -7 305 83 26 50 0 0 chr13 690383 690423 -101182746 + AT_rich Low_complexity Low_complexity 1 40 0 209 287 10 59 chr13 690897 690998 -101182171 + L2 LINE L2 559 654 -2660 302 267 40 10 chr13 691439 691540 -101181629 - L2 LINE L2 -1 3312 3209 679 123 53 18 chr13 691767 691881 -101181288 + FLAM_C SINE Alu 17 134 -9 2268 116 3 0 chr13 691954 692255 -101180914 + AluSg SINE Alu 1 302 -8 188 311 33 16 chr13 692309 692370 -101180799 + L2 LINE L2 3142 3203 -69 189 74 0 0 chr13 694677 694704 -101178465 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 241 244 0 0 chr13 694705 694750 -101178419 - MIR SINE MIR -167 95 51 1283 136 25 13 chr13 695961 697895 -101175274 - GSATX Satellite centromeric -2 1956 1 757 169 0 0 chr13 697897 698015 -101175154 + AluJb SINE Alu 190 307 -5 272 345 42 42 chr13 698211 698379 -101174790 + MLT1K LTR MaLR 189 356 -232 262 114 0 0 chr13 698455 698490 -101174679 + U2 snRNA snRNA 1 35 -153 581 191 0 9 chr13 699381 699486 -101173683 - MLT1A2 LTR MaLR 0 374 271 222 276 0 88 chr13 700291 700483 -101172686 + C-rich Low_complexity Low_complexity 5 179 0 262 289 125 0 chr13 700976 701080 -101172089 - MER5B DNA MER1_type -8 170 54 432 246 26 9 chr13 703714 703828 -101169341 + MIR SINE MIR 32 147 -115 205 232 243 22 chr13 707027 707212 -101165957 + L2 LINE L2 3014 3239 -33 185 127 27 64 chr13 707470 707580 -101165589 + (TG)n Simple_repeat Simple_repeat 1 106 0 950 166 3 3 chr13 708512 708827 -101164342 + (TCCA)n Simple_repeat Simple_repeat 1 315 0 774 199 0 3 chr13 708845 709150 -101164019 + (TCCA)n Simple_repeat Simple_repeat 1 303 0 917 170 2 5 chr13 709191 709634 -101163535 + (TCCA)n Simple_repeat Simple_repeat 1 442 0 769 185 11 0 chr13 709662 709840 -101163329 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 603 229 0 0 chr13 709803 709973 -101163196 + (TTCA)n Simple_repeat Simple_repeat 4 173 0 * 273 111 111 63 chr13 714545 714608 -101158561 - MIR3 SINE MIR -53 155 90 222 309 41 10 chr13 715657 715754 -101157415 - MIR3 SINE MIR -43 165 66 357 241 85 68 chr13 715950 716244 -101156925 + L1MC5 LINE L1 7488 7786 -175 624 287 123 18 chr13 718773 719219 -101153950 - L1MC4a LINE L1 -1867 5941 5449 629 295 143 43 chr13 719284 719800 -101153369 - L1MC4a LINE L1 -992 5154 4587 1085 164 51 23 chr13 720395 720740 -101152429 - Tigger1 DNA MER2_type -8 2410 1 1270 156 6 147 chr13 721029 721375 -101151794 - AluSx SINE Alu -5 297 1 2318 141 86 5 chr13 722616 723012 -101150157 - MSTA LTR MaLR 0 428 1 1315 175 27 115 chr13 723912 724110 -101149059 - AluYb8 SINE Alu -6 312 155 2032 149 7 0 chr13 724110 724412 -101148757 - AluSx SINE Alu -8 304 1 1315 175 27 115 chr13 724412 724551 -101148618 - AluYb8 SINE Alu -163 155 5 4412 182 84 12 chr13 724920 726351 -101146818 + L1MA10 LINE L1 4783 6334 0 311 296 9 9 chr13 726823 726938 -101146231 - HAL1b LINE L1 -951 397 283 338 230 10 20 chr13 727006 727106 -101146063 - HAL1b LINE L1 -1166 182 84 418 323 37 6 chr13 727423 727587 -101145582 - L2 LINE L2 -1 3312 3144 339 274 21 0 chr13 727627 727722 -101145447 - MER58 DNA MER1_type -74 267 171 1160 179 0 72 chr13 728280 728503 -101144666 + AluJo SINE Alu 84 290 -22 412 288 28 34 chr13 728550 728727 -101144442 - L1ME4a LINE L1 -59 6062 5887 487 301 38 10 chr13 728795 729004 -101144165 - L1ME4a LINE L1 -226 5895 5681 1207 158 27 27 chr13 729035 729257 -101143912 - AluJo SINE Alu -5 307 86 3723 109 0 6 chr13 729836 730350 -101142819 + MER9 LTR ERVK 1 511 0 225 94 0 0 chr13 730427 730459 -101142710 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr13 730871 730892 -101142277 + (TC)n Simple_repeat Simple_repeat 2 22 0 288 0 0 0 chr13 730894 730926 -101142243 + (CA)n Simple_repeat Simple_repeat 1 32 0 276 265 0 0 chr13 731262 731364 -101141805 + (TG)n Simple_repeat Simple_repeat 1 102 0 228 235 0 0 chr13 731575 731643 -101141526 + (CA)n Simple_repeat Simple_repeat 2 69 0 344 265 26 30 chr13 731812 731944 -101141225 + MIR SINE MIR 47 176 -32 386 311 68 114 chr13 732119 732557 -101140612 + L2 LINE L2 2851 3268 -4 1075 246 79 16 chr13 732903 733208 -101139961 - MLT1J1 LTR MaLR -103 343 20 185 315 96 14 chr13 733341 733414 -101139755 + L2 LINE L2 3193 3271 -1 467 134 12 0 chr13 733416 733498 -101139671 + GA-rich Low_complexity Low_complexity 2 84 0 260 328 16 0 chr13 733514 733639 -101139530 + (TGGA)n Simple_repeat Simple_repeat 2 128 0 311 155 0 14 chr13 733646 733717 -101139452 + GA-rich Low_complexity Low_complexity 3 72 0 188 67 33 0 chr13 733733 733763 -101139406 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 225 158 0 35 chr13 733789 733846 -101139323 - LTR66 LTR ERVL -152 458 404 270 0 0 0 chr13 733883 733913 -101139256 + (CA)n Simple_repeat Simple_repeat 2 31 0 359 286 71 48 chr13 735052 735220 -101137949 + MIR3 SINE MIR 20 191 -17 387 299 0 0 chr13 735276 735383 -101137786 + Charlie8 DNA MER1_type 158 264 -2153 392 255 85 9 chr13 736254 736360 -101136809 - L2 LINE L2 -23 3249 3136 913 134 0 0 chr13 736385 736512 -101136657 + AluSx SINE Alu 9 135 -177 37863 76 9 2 chr13 736513 742618 -101130551 + L1PA5 LINE L1 18 6169 0 796 191 0 0 chr13 742618 742744 -101130425 + AluSx SINE Alu 135 260 -50 216 0 0 0 chr13 742744 742768 -101130401 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 545 338 102 3 chr13 742787 743071 -101130098 - L2 LINE L2 -174 3139 2828 268 295 27 36 chr13 743158 743270 -101129899 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 1679 191 23 22 chr13 743271 743645 -101129524 - MLT2C1 LTR ERVL -20 444 1 340 336 8 17 chr13 744528 744769 -101128400 + L1M4 LINE L1 5122 5360 -786 269 254 55 12 chr13 744837 745002 -101128167 + (CAGA)n Simple_repeat Simple_repeat 1 172 0 357 82 0 0 chr13 745871 745920 -101127249 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 202 263 34 17 chr13 749219 749337 -101123832 + (CAGA)n Simple_repeat Simple_repeat 1 120 0 1438 193 64 0 chr13 751394 751659 -101121510 + AluJo SINE Alu 1 282 -30 353 330 85 23 chr13 751880 752056 -101121113 - L2 LINE L2 -1 3312 3126 1421 193 76 6 chr13 752066 752382 -101120787 + MER44D DNA MER2_type 2 609 0 1702 171 0 18 chr13 752699 752980 -101120189 + AluJb SINE Alu 1 276 -36 255 301 7 7 chr13 752980 753073 -101120096 + GA-rich Low_complexity Low_complexity 1 93 0 221 213 107 40 chr13 753353 753428 -101119741 + MIR SINE MIR 64 143 -119 2293 105 21 43 chr13 753438 753574 -101119595 - THE1B LTR MaLR 0 364 227 2499 81 0 7 chr13 753574 753883 -101119286 - AluY SINE Alu -4 307 1 2293 105 21 43 chr13 753883 754118 -101119051 - THE1B LTR MaLR -137 227 1 5101 104 8 1 chr13 754118 754849 -101118320 - THE1B-int LTR MaLR 0 1580 845 275 146 0 0 chr13 754849 754897 -101118272 + Alu SINE Alu 248 295 -7 196 340 118 7 chr13 754900 755044 -101118125 - L2 LINE L2 -2356 958 799 22449 125 29 17 chr13 755171 759663 -101113506 - L1P3 LINE L1 -659 5810 1244 291 71 0 0 chr13 759663 759705 -101113464 + (TTG)n Simple_repeat Simple_repeat 1 42 0 22449 125 29 17 chr13 759705 760268 -101112901 - L1P3 LINE L1 -5225 1244 689 188 200 150 50 chr13 760478 760558 -101112611 + MIR SINE MIR 46 133 -75 1028 247 80 37 chr13 762585 763022 -101110147 + L1MB7 LINE L1 4578 5033 -1113 510 251 57 28 chr13 763062 763309 -101109860 + Charlie5 DNA MER1_type 2332 2585 -27 373 283 61 11 chr13 763312 763492 -101109677 + L1MB7 LINE L1 5039 5227 -919 965 190 124 13 chr13 763752 763978 -101109191 + L1MB2 LINE L1 5921 6171 0 7544 94 21 21 chr13 765772 766779 -101106390 + LTR13 LTR ERVK 1 1007 0 1090 195 191 24 chr13 767289 767535 -101105634 - AluJo SINE Alu -15 287 1 301 200 0 0 chr13 767535 767595 -101105574 + L1MC4 LINE L1 6642 6701 -1341 303 210 0 0 chr13 767642 767704 -101105465 - L1MC4 LINE L1 -1339 6703 6642 245 287 205 23 chr13 767745 767930 -101105239 + MIR SINE MIR 23 237 -25 399 170 2 17 chr13 768510 768599 -101104570 + L1MA6 LINE L1 6196 6283 -17 549 261 151 13 chr13 768600 768911 -101104258 + Charlie7 DNA MER1_type 1997 2350 -262 2223 135 21 52 chr13 769333 769914 -101103255 + MER4A LTR ERV1 34 664 0 4610 193 37 35 chr13 772344 774125 -101099044 + L1MB3 LINE L1 4398 6181 -2 1791 167 24 0 chr13 775211 775505 -101097664 + AluSg SINE Alu 1 301 -9 342 215 0 0 chr13 775505 775584 -101097585 + G-rich Low_complexity Low_complexity 3 81 0 1011 308 173 35 chr13 775803 776755 -101096414 - L2 LINE L2 -379 2935 1852 1719 214 79 46 chr13 776833 777016 -101096153 + L1MB7 LINE L1 5222 5397 -781 1682 167 3 17 chr13 777016 777304 -101095865 + AluJb SINE Alu 22 305 -7 1719 214 79 46 chr13 777304 777760 -101095409 + L1MB7 LINE L1 5397 5884 -294 452 201 27 121 chr13 777820 777969 -101095200 + L1MB7 LINE L1 6041 6175 -9 1527 193 24 20 chr13 779848 780143 -101093026 + AluJo SINE Alu 1 296 -16 927 239 127 14 chr13 780263 780547 -101092622 + MER33 DNA MER1_type 8 323 -1 435 223 54 9 chr13 781192 781304 -101091865 - Tigger1 DNA MER2_type 0 2418 2302 * 1779 157 23 0 chr13 781302 781601 -101091568 - Tigger1 DNA MER2_type -374 2044 1739 2067 120 3 0 chr13 781601 781884 -101091285 - AluSp SINE Alu -11 302 19 4371 114 16 41 chr13 781961 782230 -101090939 - Tigger1 DNA MER2_type -670 1748 1474 2308 98 0 3 chr13 782230 782526 -101090643 - AluY SINE Alu -16 295 1 4371 114 16 41 chr13 782526 782560 -101090609 - Tigger1 DNA MER2_type -944 1474 1441 1376 196 17 33 chr13 782560 782861 -101090308 + AluJo SINE Alu 1 296 -16 4371 114 16 41 chr13 782861 783259 -101089910 - Tigger1 DNA MER2_type -977 1441 1064 1535 174 3 49 chr13 883273 883577 -100989592 + AluJo SINE Alu 17 306 -6 452 330 48 35 chr13 884574 884804 -100988365 + L1MC4a LINE L1 5342 5574 -2234 284 236 24 79 chr13 884950 885077 -100988092 + L1MC4a LINE L1 5819 5938 -1870 1550 192 0 14 chr13 885293 885585 -100987584 + AluJo SINE Alu 6 293 -19 629 170 0 0 chr13 885671 885771 -100987398 - AluSp/q SINE Alu -19 294 195 240 237 173 58 chr13 885921 886060 -100987109 - MIR SINE MIR -58 204 50 233 286 0 0 chr13 886629 886678 -100986491 + (TG)n Simple_repeat Simple_repeat 1 49 0 3898 239 26 28 chr13 888687 889884 -100983285 - L1P LINE L1 -2604 3542 2348 1974 140 0 0 chr13 889886 890178 -100982991 + AluSg SINE Alu 1 292 -18 186 256 151 101 chr13 892729 892967 -100980202 + L2 LINE L2 2026 2275 -1039 2019 132 0 0 chr13 893517 893812 -100979357 - AluSx SINE Alu -17 295 1 1755 201 36 0 chr13 895250 895579 -100977590 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 896251 896272 -100976897 + AT_rich Low_complexity Low_complexity 1 21 0 3725 129 5 52 chr13 896300 896921 -100976248 - LTR14B LTR ERVK 0 608 17 440 297 121 18 chr13 897016 897181 -100975988 - MER5A DNA MER1_type 0 189 8 265 333 0 21 chr13 897216 897309 -100975860 - MER5A DNA MER1_type -31 158 68 2289 174 48 30 chr13 897441 897941 -100975228 - LTR22 LTR ERVK 0 509 1 1527 191 0 13 chr13 898074 898372 -100974797 + AluJo SINE Alu 1 294 -18 2003 140 0 3 chr13 898374 898688 -100974481 + AluSq SINE Alu 1 313 0 509 274 161 36 chr13 899864 900087 -100973082 + MIR SINE MIR 2 252 -10 845 161 112 0 chr13 900415 900558 -100972611 - AluSc SINE Alu -16 293 135 381 244 109 0 chr13 900625 900744 -100972425 - Charlie7 DNA MER1_type -266 2346 2215 1038 107 0 0 chr13 900901 901041 -100972128 + AluSx SINE Alu 61 200 -112 605 121 0 78 chr13 901084 901164 -100972005 + AluSx SINE Alu 203 273 -39 428 0 0 19 chr13 901164 901217 -100971952 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 605 121 0 78 chr13 901217 901252 -100971917 + AluSx SINE Alu 273 309 -3 1633 156 43 7 chr13 901343 901625 -100971544 - AluJo SINE Alu -19 293 2 580 163 7 118 chr13 901649 901784 -100971385 - AluJb SINE Alu -187 125 6 1489 85 5 5 chr13 901862 902062 -100971107 + AluY SINE Alu 95 294 -17 374 234 64 26 chr13 902066 902376 -100970793 - L1MC5 LINE L1 -302 7659 7304 1893 153 0 0 chr13 902577 902877 -100970292 + AluJb SINE Alu 1 300 -12 195 129 0 0 chr13 903069 903100 -100970069 + (TATG)n Simple_repeat Simple_repeat 4 34 0 311 268 98 0 chr13 903102 903184 -100969985 - L1MC4 LINE L1 -1339 6703 6614 * 360 272 0 22 chr13 903146 903238 -100969931 + L1MC4 LINE L1 6614 6703 -1339 257 231 0 22 chr13 903240 903331 -100969838 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 338 299 23 0 chr13 903331 903418 -100969751 + L1MC4 LINE L1 6615 6703 -1339 709 231 17 103 chr13 903428 903949 -100969220 + MER115 DNA AcHobo 71 4031 0 823 216 25 6 chr13 904956 905118 -100968051 - FRAM SINE Alu -14 162 1 21 0 0 0 chr13 905512 905533 -100967636 + AT_rich Low_complexity Low_complexity 1 21 0 597 279 62 12 chr13 905819 906059 -100967110 + L2 LINE L2 2033 2284 -1030 1608 143 34 4 chr13 906085 906350 -100966819 - AluJb SINE Alu -39 273 1 1137 273 45 32 chr13 906350 907059 -100966110 - L1ME LINE L1 -4823 1257 536 812 325 30 55 chr13 907203 907735 -100965434 - L1ME LINE L1 -5539 531 13 1817 166 0 3 chr13 907946 908230 -100964939 + AluJb SINE Alu 1 304 0 190 0 0 0 chr13 908230 908251 -100964918 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 429 219 57 19 chr13 908376 908481 -100964688 + MLT1J2 LTR MaLR 3 111 -339 443 274 74 57 chr13 908543 908718 -100964451 + MLT1J2 LTR MaLR 238 415 -31 638 211 102 0 chr13 909104 909251 -100963918 + L1PA16 LINE L1 5999 6160 -6 1202 162 18 0 chr13 909497 909719 -100963450 - L1MA4 LINE L1 0 6300 6075 1057 214 7 65 chr13 909790 910098 -100963071 - L1MA10 LINE L1 -13 6321 6032 406 255 0 0 chr13 910466 910560 -100962609 - MIR SINE MIR -110 152 59 488 239 92 0 chr13 910653 910783 -100962386 - MIR SINE MIR -65 197 56 2524 44 0 0 chr13 912229 912523 -100960646 + AluY SINE Alu 1 294 -17 1786 177 3 3 chr13 912947 913252 -100959917 + AluJb SINE Alu 2 306 -6 233 279 0 15 chr13 913262 913330 -100959839 - MIR3 SINE MIR -32 176 110 304 182 76 0 chr13 913396 913462 -100959707 - MIR SINE MIR -60 148 78 1761 174 0 17 chr13 913596 913889 -100959280 - AluJo SINE Alu -9 303 16 464 291 55 21 chr13 914444 914985 -100958184 + L1MC/D LINE L1 4928 5481 -750 849 163 27 0 chr13 915008 915155 -100958014 + FAM SINE Alu 1 42 -7 998 111 0 7 chr13 915203 915338 -100957831 - AluSq/x SINE Alu -178 134 1 1800 123 93 13 chr13 915449 915759 -100957410 - MER1B DNA MER1_type -2 335 1 1118 131 0 0 chr13 916508 916668 -100956501 + FRAM SINE Alu 2 161 -15 523 187 81 8 chr13 916868 916991 -100956178 - L1MB4 LINE L1 -1 6179 6048 2382 91 0 19 chr13 917258 917576 -100955593 + AluSx SINE Alu 1 312 0 310 279 158 6 chr13 917737 917895 -100955274 - MIR SINE MIR -79 183 2 248 200 36 91 chr13 917911 918021 -100955148 - L1MB4 LINE L1 -2330 5478 5375 1680 148 7 7 chr13 918044 918314 -100954855 - AluJb SINE Alu -40 272 3 770 171 0 8 chr13 918322 918445 -100954724 - FLAM_C SINE Alu -17 126 5 22 35 0 0 chr13 919491 919520 -100953649 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr13 919696 919741 -100953428 + AT_rich Low_complexity Low_complexity 1 45 0 261 241 93 28 chr13 920622 920730 -100952439 - L2 LINE L2 -1 3271 3157 893 224 91 5 chr13 920975 921185 -100951984 - L1ME1 LINE L1 -11 6155 5928 210 91 0 0 chr13 921515 921548 -100951621 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 842 144 16 171 chr13 921848 922153 -100951016 + LTR49 LTR ERV1 12 269 -326 398 188 25 19 chr13 922261 922377 -100950792 + LTR49 LTR ERV1 246 485 -254 352 203 174 80 chr13 922400 922538 -100950631 + LTR48 LTR ERV1 607 757 -30 2326 216 115 36 chr13 922615 923277 -100949892 + MER21B LTR ERV1 98 811 -52 26 82 0 0 chr13 924560 924621 -100948548 + GC_rich Low_complexity Low_complexity 1 61 0 1302 80 150 0 chr13 925031 925231 -100947938 + MER30 DNA MER1_type 1 230 0 2160 121 0 10 chr13 925981 926304 -100946865 - AluSx SINE Alu 0 320 1 860 159 7 0 chr13 926416 926554 -100946615 + L1M4 LINE L1 5342 5480 -698 1574 180 32 0 chr13 926563 926841 -100946328 + AluJb SINE Alu 1 287 -25 294 273 9 59 chr13 926895 927056 -100946113 + FRAM SINE Alu 8 135 -31 2364 108 0 0 chr13 928014 928319 -100944850 - AluSq SINE Alu -8 305 1 2355 109 0 0 chr13 929246 929549 -100943620 - AluSx SINE Alu -9 303 1 496 272 63 24 chr13 931788 931994 -100941175 - MIR SINE MIR -48 214 1 207 281 0 18 chr13 931988 932045 -100941124 + MIR SINE MIR 2 57 -205 * 195 252 118 39 chr13 932493 932620 -100940549 + L2 LINE L2 1429 1565 -1749 1643 125 27 116 chr13 932749 933084 -100940085 - AluJb SINE Alu -7 305 1 196 241 0 0 chr13 933175 933229 -100939940 + MIR SINE MIR 204 257 -5 732 261 336 8 chr13 933373 934158 -100939011 + L2 LINE L2 1587 2629 -685 764 258 104 13 chr13 934230 934548 -100938621 + LTR16A LTR ERVL 104 450 0 1116 280 54 19 chr13 934572 935186 -100937983 + L2 LINE L2 2668 3313 0 1753 180 0 10 chr13 935602 935896 -100937273 - AluJb SINE Alu -21 291 1 809 136 0 23 chr13 935932 936064 -100937105 - FLAM_A SINE Alu 0 142 14 1597 179 17 10 chr13 936969 937115 -100936054 + AluJo SINE Alu 1 144 -168 2438 74 0 3 chr13 937115 937414 -100935755 + AluY SINE Alu 1 298 -13 1597 179 17 10 chr13 937414 937558 -100935611 + AluJo SINE Alu 144 293 -19 216 0 0 0 chr13 937558 937582 -100935587 + (TA)n Simple_repeat Simple_repeat 2 25 0 2108 135 10 3 chr13 938537 938834 -100934335 - AluJo SINE Alu -13 299 1 565 15 0 0 chr13 939275 939343 -100933826 - L1PA6 LINE L1 -1 6153 6086 279 36 15 0 chr13 939343 939383 -100933786 + L1PA5 LINE L1 5929 5972 -182 2428 53 3 7 chr13 939401 939705 -100933464 - AluY SINE Alu -8 303 1 2460 77 0 0 chr13 939707 940018 -100933151 - AluY SINE Alu 0 311 1 189 0 0 0 chr13 940636 940657 -100932512 + (TG)n Simple_repeat Simple_repeat 2 22 0 1573 164 6 61 chr13 940657 940830 -100932339 - AluJo SINE Alu -26 286 133 2375 72 0 3 chr13 940830 941122 -100932047 + AluY SINE Alu 1 291 -20 1573 164 6 61 chr13 941122 941249 -100931920 - AluJo SINE Alu -179 133 1 10039 119 18 3 chr13 941335 942792 -100930377 + Tigger1 DNA MER2_type 1 1478 -940 2363 107 3 0 chr13 942793 943102 -100930067 + AluSq SINE Alu 1 310 -3 632 188 58 36 chr13 943120 943258 -100929911 + FRAM SINE Alu 20 160 -16 6096 125 21 2 chr13 943258 944188 -100928981 + Tigger1 DNA MER2_type 1471 2418 0 376 325 47 0 chr13 944208 944377 -100928792 - L1ME3A LINE L1 -288 5882 5706 1433 234 6 6 chr13 944393 944705 -100928464 - AluJo SINE Alu 0 312 1 1039 118 0 0 chr13 944705 944840 -100928329 - AluSq/x SINE Alu -177 135 1 339 249 0 4 chr13 944847 944952 -100928217 - L1ME3A LINE L1 -803 5361 5259 273 280 43 11 chr13 944965 945058 -100928111 + MIR SINE MIR 47 142 -120 1744 158 0 21 chr13 945107 945386 -100927783 - AluJo SINE Alu -39 273 1 2447 77 0 0 chr13 945828 946126 -100927043 - AluY SINE Alu -13 298 1 237 263 60 30 chr13 946254 946387 -100926782 - L1ME3A LINE L1 -1082 5064 4928 296 273 10 10 chr13 946562 946661 -100926508 - L1ME3A LINE L1 -1499 4647 4549 699 186 0 0 chr13 947078 947196 -100925973 - FLAM_C SINE Alu -15 118 1 389 281 29 41 chr13 947576 947818 -100925351 + L1ME4a LINE L1 5714 5952 -169 269 111 0 0 chr13 947827 947872 -100925297 + FLAM_A SINE Alu 89 133 0 1948 131 0 39 chr13 947887 948193 -100924976 + AluSx SINE Alu 1 294 -18 2422 72 0 0 chr13 948197 948490 -100924679 + AluY SINE Alu 2 294 -17 2419 77 3 0 chr13 948497 948796 -100924373 + AluSc SINE Alu 1 300 -9 233 163 0 0 chr13 948848 948891 -100924278 - L2 LINE L2 -248 3065 3023 476 279 114 0 chr13 949201 949341 -100923828 - MER63 DNA MER1_type -276 786 5 435 155 70 120 chr13 949384 949526 -100923643 + L1ME4a LINE L1 5985 6119 -2 2118 132 0 0 chr13 949895 950182 -100922987 - AluSx SINE Alu -25 287 1 3151 165 79 27 chr13 950188 950844 -100922325 - L1MB5 LINE L1 0 6174 5485 2247 117 0 0 chr13 952138 952438 -100920731 + AluSg SINE Alu 1 300 -10 206 286 62 27 chr13 952719 952831 -100920338 + L2 LINE L2 3150 3265 -7 2007 162 24 26 chr13 953023 953406 -100919763 + MLT1B LTR MaLR 1 382 -8 23 0 0 0 chr13 953696 953719 -100919450 + AT_rich Low_complexity Low_complexity 1 23 0 310 193 59 82 chr13 953841 953976 -100919193 - L1ME4a LINE L1 -48 6073 5942 561 160 0 114 chr13 954108 954239 -100918930 - FLAM_A SINE Alu -13 120 5 24 53 0 0 chr13 954473 954511 -100918658 + AT_rich Low_complexity Low_complexity 1 38 0 868 128 45 0 chr13 954549 954682 -100918487 + FLAM_C SINE Alu 3 141 -2 181 300 29 29 chr13 955241 955311 -100917858 + MIR3 SINE MIR 87 156 -52 23 0 0 0 chr13 955567 955590 -100917579 + AT_rich Low_complexity Low_complexity 1 23 0 190 207 244 0 chr13 956761 956843 -100916326 - MIR SINE MIR -71 137 36 297 0 0 0 chr13 957778 957811 -100915358 + (TG)n Simple_repeat Simple_repeat 1 33 0 260 278 145 18 chr13 958436 958580 -100914589 + MIR SINE MIR 5 142 -66 3637 57 4 13 chr13 960988 961465 -100911704 - L1PA7 LINE L1 0 6154 5682 270 299 126 32 chr13 962186 962534 -100910635 + L1ME LINE L1 5504 5884 -237 592 203 27 20 chr13 963338 963486 -100909683 - L1PA16 LINE L1 0 6166 6018 3634 172 11 18 chr13 963717 964480 -100908689 - L1MA3 LINE L1 0 6305 5549 24 32 0 0 chr13 965357 965388 -100907781 + AT_rich Low_complexity Low_complexity 1 31 0 745 171 0 0 chr13 966188 966305 -100906864 + FLAM_A SINE Alu 1 117 -16 369 333 59 26 chr13 967874 968027 -100905142 - L2 LINE L2 -215 3098 2941 187 167 48 24 chr13 969812 969854 -100903315 + MER5A DNA MER1_type 43 85 -104 * 357 189 156 11 chr13 969838 969928 -100903241 - MER5A DNA MER1_type -77 112 10 327 25 0 0 chr13 972110 972150 -100901019 + (TG)n Simple_repeat Simple_repeat 1 40 0 437 188 21 0 chr13 972647 972743 -100900426 - Charlie1 DNA MER1_type -45 2716 2619 1121 206 5 0 chr13 974215 974424 -100898745 + AluJb SINE Alu 97 306 -6 2055 121 0 0 chr13 974763 975036 -100898133 + AluSx SINE Alu 1 273 -39 494 181 0 0 chr13 975038 975121 -100898048 + AluJb SINE Alu 206 288 -24 968 189 0 0 chr13 975174 975338 -100897831 + FRAM SINE Alu 8 171 -5 3437 162 32 0 chr13 975357 976018 -100897151 + L1MB3 LINE L1 5472 6153 -30 584 190 50 25 chr13 977465 977586 -100895583 - AluJb SINE Alu -15 297 174 1121 206 5 0 chr13 977762 977971 -100895198 + AluJb SINE Alu 97 306 -6 2271 124 0 0 chr13 978310 978617 -100894552 + AluSx SINE Alu 1 307 -5 24 32 0 0 chr13 979199 979230 -100893939 + AT_rich Low_complexity Low_complexity 1 31 0 1215 108 5 5 chr13 980017 980212 -100892957 - L1MA1 LINE L1 0 6302 6108 25 31 0 0 chr13 980406 980438 -100892731 + AT_rich Low_complexity Low_complexity 1 32 0 8879 219 30 20 chr13 980447 983155 -100890014 - L1 LINE L1 -1438 5410 2675 768 158 0 0 chr13 983193 983307 -100889862 - AluJo SINE Alu -21 291 178 1997 177 92 0 chr13 983307 983697 -100889472 + MSTB LTR MaLR 1 426 0 7875 194 18 11 chr13 983769 985383 -100887786 + MSTB-int LTR MaLR 27 1651 0 1940 202 52 2 chr13 985383 985784 -100887385 + MSTB LTR MaLR 1 421 -5 790 226 11 32 chr13 985784 985974 -100887195 - AluJo SINE Alu -126 186 1 1345 239 31 14 chr13 985975 986397 -100886772 - L1 LINE L1 -4180 2669 2241 282 73 0 0 chr13 986401 986442 -100886727 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 402 21 0 0 chr13 986441 986488 -100886681 + (TA)n Simple_repeat Simple_repeat 2 48 0 269 309 45 0 chr13 987404 987514 -100885655 + L1ME LINE L1 5474 5588 -533 2547 273 114 40 chr13 988045 989484 -100883685 + L2 LINE L2 1778 3313 0 7072 23 0 1 chr13 990671 991493 -100881676 + L1PA4 LINE L1 5332 6152 -3 337 279 279 27 chr13 991784 992078 -100881091 - L2 LINE L2 -1308 2006 1639 665 269 34 19 chr13 992873 993081 -100880088 + MIR SINE MIR 6 216 -46 2264 98 7 0 chr13 993424 993720 -100879449 + AluSg SINE Alu 1 298 -12 2917 248 26 9 chr13 994143 995312 -100877857 + L1PA16 LINE L1 1361 2574 -4223 7753 246 39 20 chr13 995317 997741 -100875428 + L1PA16 LINE L1 2787 5263 -1534 1842 162 17 3 chr13 997741 998037 -100875132 - AluJb SINE Alu -12 300 1 7753 246 39 20 chr13 998037 998164 -100875005 + L1PA16 LINE L1 5263 5386 -1411 2501 184 20 2 chr13 998164 998654 -100874515 + L1PA16 LINE L1 6313 6811 -6 281 360 64 41 chr13 999179 999351 -100873818 + L2 LINE L2 2564 2739 -575 561 250 0 0 chr13 999496 999640 -100873529 - L1MA10 LINE L1 -11 6323 6180 956 177 24 141 chr13 999658 999950 -100873219 - L1ME LINE L1 -571 5595 5367 1831 167 0 0 chr13 999950 1000256 -100872913 + L1PB1 LINE L1 5831 6136 -15 956 177 24 141 chr13 1000256 1000446 -100872723 - L1ME LINE L1 -799 5367 5156 7655 26 25 21 chr13 1000452 1001479 -100871690 - L1PA4 LINE L1 -8 6147 5120 684 249 61 6 chr13 1001574 1001755 -100871414 - MER58A DNA MER1_type -32 192 2 1456 228 69 24 chr13 1001780 1002231 -100870938 - L1ME LINE L1 -1947 4199 3729 3099 158 23 11 chr13 1002241 1002815 -100870354 - L1MC1 LINE L1 -19 6314 5734 1730 189 0 16 chr13 1004592 1004904 -100868265 - AluJo SINE Alu -5 307 1 359 292 112 11 chr13 1005633 1005910 -100867259 + L1M4 LINE L1 4017 4321 -1825 229 237 171 20 chr13 1005936 1006088 -100867081 + L1M4 LINE L1 4378 4552 -1594 2741 180 61 8 chr13 1006242 1007273 -100865896 - Tigger1 DNA MER2_type 0 2418 1301 289 304 80 22 chr13 1010818 1010956 -100862213 + MER5B DNA MER1_type 1 146 -32 280 293 57 0 chr13 1011535 1011692 -100861477 - L1ME LINE L1 -2402 3744 3579 414 296 76 35 chr13 1012142 1012456 -100860713 - L1ME4a LINE L1 -284 5837 5511 209 211 0 0 chr13 1014080 1014118 -100859051 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 459 292 51 17 chr13 1017278 1017456 -100855713 - L2 LINE L2 -410 2904 2721 2106 83 54 0 chr13 1018115 1018393 -100854776 + AluSp SINE Alu 3 295 -18 1236 185 12 62 chr13 1018766 1019090 -100854079 - L1MB8 LINE L1 0 6178 5871 3457 136 31 4 chr13 1019122 1019636 -100853533 + MER1A DNA MER1_type 2 529 0 1963 167 83 0 chr13 1019636 1020004 -100853165 - MSTB LTR MaLR -23 403 5 590 174 82 10 chr13 1020004 1020139 -100853030 - L1MB8 LINE L1 -308 5876 5743 7056 185 42 91 chr13 1020427 1022486 -100850683 - L1MB8 LINE L1 -756 5390 3433 544 183 26 2 chr13 1022960 1023075 -100850094 - L1MA9 LINE L1 -26 6277 6166 647 297 12 6 chr13 1024647 1024812 -100848357 + FAM SINE Alu 1 166 -9 1577 200 0 20 chr13 1024831 1025126 -100848043 - AluJo SINE Alu -23 289 1 9506 106 16 6 chr13 1025700 1027944 -100845225 - L1PA8 LINE L1 -5 6167 3905 10919 104 10 3 chr13 1028064 1029696 -100843473 - L1P3 LINE L1 -1676 4785 3142 42148 35 27 0 chr13 1030256 1036242 -100836927 - L1PA2 LINE L1 -4 6151 3 12704 129 6 44 chr13 1036242 1037226 -100835943 - L1P3 LINE L1 -3304 3157 2137 2327 40 0 27 chr13 1037226 1037522 -100835647 + L1PA6 LINE L1 5865 6152 -2 12704 129 6 44 chr13 1037522 1039437 -100833732 - L1P3 LINE L1 -4324 2137 299 212 286 71 71 chr13 1039876 1039960 -100833209 + L2 LINE L2 3174 3257 -15 347 320 40 20 chr13 1042036 1042186 -100830983 + MIR3 SINE MIR 8 160 -48 4712 78 17 95 chr13 1043852 1044683 -100828486 - MER4E LTR ERV1 0 766 1 181 323 144 72 chr13 1045556 1045986 -100827183 + L2 LINE L2 2812 3272 0 2208 105 20 0 chr13 1046540 1046844 -100826325 + AluSg SINE Alu 1 310 0 225 0 0 0 chr13 1047175 1047200 -100825969 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1936 242 73 4 chr13 1047268 1047951 -100825218 - L1MC4 LINE L1 -149 7893 7012 2792 206 34 75 chr13 1047980 1048852 -100824317 - L1MC4 LINE L1 -4 8038 7202 2196 79 3 26 chr13 1048898 1049201 -100823968 + AluSp SINE Alu 14 309 -4 697 145 0 0 chr13 1049201 1049318 -100823851 + L1MA3 LINE L1 6145 6261 -44 414 0 0 0 chr13 1049318 1049364 -100823805 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr13 1049370 1049395 -100823774 + AT_rich Low_complexity Low_complexity 1 25 0 1131 208 5 0 chr13 1049395 1049607 -100823562 - Tigger2 DNA MER2_type -2170 548 336 22 35 0 0 chr13 1052490 1052519 -100820650 + AT_rich Low_complexity Low_complexity 1 29 0 348 264 88 26 chr13 1052692 1052961 -100820208 - L1MC/D LINE L1 -751 5395 5195 13844 188 21 6 chr13 1053477 1055190 -100817979 - L1PB1 LINE L1 -5 6862 5176 387 0 0 0 chr13 1055190 1055233 -100817936 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 13844 188 21 6 chr13 1055233 1057553 -100815616 - L1PB1 LINE L1 -1691 5176 2778 2082 154 40 5 chr13 1057548 1057970 -100815199 - L1PB1 LINE L1 -4576 2287 1851 * 5906 160 24 5 chr13 1057978 1059823 -100813346 - L1PB1 LINE L1 0 6867 4994 350 198 0 0 chr13 1060594 1060675 -100812494 + L1 LINE L1 4213 4293 -1853 9418 196 6 5 chr13 1060677 1062956 -100810213 - L1PB1 LINE L1 -1820 5042 2704 1056 101 6 0 chr13 1063268 1063436 -100809733 - L1PB1 LINE L1 -4149 2714 2546 7224 185 59 6 chr13 1063536 1065787 -100807382 - L1PB1 LINE L1 -4333 2530 1 9991 148 49 3 chr13 1065799 1067584 -100805585 - L1PBa LINE L1 -4996 1867 1 300 333 101 13 chr13 1067844 1068003 -100805166 - L1M4 LINE L1 -2470 3676 3504 402 243 20 47 chr13 1069175 1069323 -100803846 + MLT1F LTR MaLR 14 157 -410 180 77 0 0 chr13 1069396 1069422 -100803747 + (TCC)n Simple_repeat Simple_repeat 2 27 0 677 220 155 22 chr13 1069428 1069651 -100803518 + MLT1F LTR MaLR 170 481 -112 263 286 0 33 chr13 1069677 1069768 -100803401 + L1M3c LINE L1 670 757 -5906 275 274 14 0 chr13 1070092 1070165 -100803004 + L1M3c LINE L1 1453 1526 -5127 1011 225 116 6 chr13 1070220 1070686 -100802483 - L1M4 LINE L1 -2831 3315 2799 4530 141 27 5 chr13 1071048 1071834 -100801335 - L1MA3 LINE L1 -2 6303 5501 361 307 123 43 chr13 1071834 1071997 -100801172 + L1M2 LINE L1 779 954 -5895 2231 119 0 3 chr13 1072379 1072682 -100800487 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr13 1073117 1073140 -100800029 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9352 208 32 7 chr13 1074101 1076517 -100796652 - L1PA15 LINE L1 -9 6156 3801 626 37 12 0 chr13 1076517 1076598 -100796571 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 9352 208 32 7 chr13 1076598 1077170 -100795999 - L1PA15 LINE L1 -2364 3801 3075 2354 88 3 0 chr13 1077170 1077466 -100795703 - AluSp SINE Alu -1 312 16 9352 208 32 7 chr13 1077466 1077834 -100795335 - L1PA15 LINE L1 -3090 3075 2718 873 130 0 0 chr13 1077836 1077951 -100795218 - AluSq/x SINE Alu -196 117 3 472 274 43 37 chr13 1078104 1078268 -100794901 - L2 LINE L2 -1162 2152 1988 1863 109 76 0 chr13 1078304 1078579 -100794590 - AluSq SINE Alu -17 296 1 1680 160 34 10 chr13 1078623 1078916 -100794253 - AluJb SINE Alu -12 300 1 1896 126 41 0 chr13 1079127 1079398 -100793771 + AluSx SINE Alu 1 282 -30 2348 108 0 13 chr13 1079486 1079802 -100793367 + AluSq SINE Alu 1 312 -1 1444 168 34 48 chr13 1080365 1080586 -100792583 + AluJb SINE Alu 1 219 -93 2342 101 7 0 chr13 1080586 1080893 -100792276 - AluSq SINE Alu -4 309 1 1444 168 34 48 chr13 1080893 1080963 -100792206 + AluJb SINE Alu 219 288 -24 400 284 0 0 chr13 1081019 1081107 -100792062 + AluJ/FLAM SINE Alu 3 90 -222 296 265 114 38 chr13 1081222 1081354 -100791815 - L2 LINE L2 0 3313 3172 194 323 62 21 chr13 1081560 1081656 -100791513 + MIR SINE MIR 12 111 -151 2202 106 7 0 chr13 1082190 1082482 -100790687 + AluSp SINE Alu 2 295 -18 279 203 0 0 chr13 1082774 1082833 -100790336 + (TA)n Simple_repeat Simple_repeat 2 60 0 1173 137 0 12 chr13 1082833 1083001 -100790168 - AluSx SINE Alu -24 286 121 1195 122 0 0 chr13 1083471 1083643 -100789526 + AluSg/x SINE Alu 131 302 -7 2092 130 3 3 chr13 1083732 1084025 -100789144 - AluSx SINE Alu -19 293 1 963 143 0 0 chr13 1084029 1084162 -100789007 - AluSx SINE Alu -179 133 1 211 333 20 50 chr13 1084187 1084286 -100788883 - MER5A DNA MER1_type 0 189 94 519 161 43 0 chr13 1084854 1084947 -100788222 - AluSg/x SINE Alu -9 301 205 1887 178 0 3 chr13 1085084 1085377 -100787792 + AluJo SINE Alu 1 292 -20 326 272 95 44 chr13 1085426 1085584 -100787585 - L1MC/D LINE L1 -1973 5835 5670 2312 88 7 0 chr13 1085586 1085880 -100787289 - AluSx SINE Alu -16 296 1 1859 122 89 0 chr13 1085996 1086267 -100786902 - AluSx SINE Alu -17 295 1 1758 128 0 57 chr13 1086276 1086573 -100786596 - AluSg SINE Alu -6 304 25 850 142 0 0 chr13 1086600 1086741 -100786428 + AluSc SINE Alu 166 306 -3 1735 86 0 9 chr13 1086897 1087119 -100786050 + AluSc SINE Alu 73 292 -17 198 0 0 0 chr13 1087403 1087425 -100785744 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1809 113 12 4 chr13 1087425 1087682 -100785487 - AluSx SINE Alu -29 283 25 764 207 0 7 chr13 1088145 1088290 -100784879 + FRAM SINE Alu 20 163 -13 2303 106 0 0 chr13 1088306 1088608 -100784561 - AluSp SINE Alu -11 302 1 732 171 16 0 chr13 1088608 1088731 -100784438 - AluJb SINE Alu -175 137 13 26 0 0 0 chr13 1088759 1088785 -100784384 + AT_rich Low_complexity Low_complexity 1 26 0 349 140 0 0 chr13 1088867 1088924 -100784245 - AluS SINE Alu -244 57 1 2004 153 0 0 chr13 1088969 1089256 -100783913 - AluSx SINE Alu -25 287 1 21437 61 1 0 chr13 1089523 1092357 -100780812 + L1P LINE L1 1 2835 -3311 31693 41 2 2 chr13 1092364 1096413 -100776756 + L1P LINE L1 5 4052 -2094 678 149 0 18 chr13 1096516 1096630 -100776539 + FLAM_A SINE Alu 5 116 -17 2308 93 0 3 chr13 1096635 1096935 -100776234 - AluY SINE Alu -12 299 1 620 165 26 9 chr13 1097345 1097460 -100775709 + FLAM_A SINE Alu 1 117 -16 4464 179 37 5 chr13 1097529 1098403 -100774766 - L1MC1 LINE L1 -17 6316 5415 539 311 7 0 chr13 1098774 1098925 -100774244 - FRAM SINE Alu -24 152 1 306 0 0 0 chr13 1098927 1098961 -100774208 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1519 122 0 5 chr13 1098961 1099175 -100773994 - AluSg/x SINE Alu -29 281 69 1562 185 7 14 chr13 1099175 1099451 -100773718 + AluJo SINE Alu 17 290 -22 21 71 0 0 chr13 1100414 1100456 -100772713 + AT_rich Low_complexity Low_complexity 1 42 0 1703 168 18 3 chr13 1101117 1101403 -100771766 - AluJb SINE Alu -12 300 11 2341 72 0 7 chr13 1104125 1104429 -100768740 + AluY SINE Alu 1 302 -9 2203 117 0 0 chr13 1105052 1105361 -100767808 - AluSg SINE Alu -1 309 1 21 36 0 0 chr13 1105714 1105742 -100767427 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 1105820 1105850 -100767319 + AT_rich Low_complexity Low_complexity 1 30 0 245 271 37 19 chr13 1106056 1106163 -100767006 - MER104 DNA Tc2 -61 119 11 1396 51 0 29 chr13 1106874 1107049 -100766120 + AluY SINE Alu 124 293 -18 207 88 0 0 chr13 1108623 1108657 -100764512 + (T)n Simple_repeat Simple_repeat 1 34 0 875 153 26 37 chr13 1109960 1110149 -100763020 - MLT1B LTR MaLR -203 187 1 2299 117 0 0 chr13 1110430 1110737 -100762432 + AluSx SINE Alu 6 312 0 1461 75 0 0 chr13 1110847 1111021 -100762148 - AluSq SINE Alu -6 307 134 1937 110 0 53 chr13 1111026 1111368 -100761801 - AluSx SINE Alu 0 326 1 1956 236 75 10 chr13 1111417 1112119 -100761050 + L1ME LINE L1 3124 3871 -2275 1764 136 48 0 chr13 1112208 1112480 -100760689 - AluJb SINE Alu -27 285 1 2102 204 68 71 chr13 1112480 1112716 -100760453 + L1ME LINE L1 4571 4806 -1360 1934 133 9 59 chr13 1112716 1113040 -100760129 + AluJb SINE Alu 1 308 -4 2102 204 68 71 chr13 1113040 1113171 -100759998 + L1ME LINE L1 4806 4936 -1230 1780 155 20 30 chr13 1113171 1113475 -100759694 - AluSx SINE Alu -11 301 1 2102 204 68 71 chr13 1113475 1113487 -100759682 + L1ME LINE L1 4936 4947 -1219 2141 113 17 0 chr13 1113487 1113778 -100759391 - AluSx SINE Alu -16 296 1 2102 204 68 71 chr13 1113778 1113809 -100759360 + L1ME LINE L1 4947 4977 -1189 2295 87 0 14 chr13 1113809 1114123 -100759046 - AluSq SINE Alu 0 310 1 2102 204 68 71 chr13 1114123 1114640 -100758529 + L1ME LINE L1 4977 5490 -676 2205 106 0 34 chr13 1114640 1114773 -100758396 + AluSc SINE Alu 1 137 -172 1870 119 87 0 chr13 1114773 1115050 -100758119 + AluSg SINE Alu 1 301 -9 2205 106 0 34 chr13 1115050 1115236 -100757933 + AluSc SINE Alu 137 309 0 420 178 57 18 chr13 1115236 1115362 -100757807 + L1ME LINE L1 5678 5813 -371 * 534 241 37 25 chr13 1115360 1115410 -100757759 - L1M4 LINE L1 -2474 3672 3624 2156 126 24 0 chr13 1115410 1115704 -100757465 - AluSx SINE Alu -11 301 1 534 241 37 25 chr13 1115704 1115873 -100757296 - L1M4 LINE L1 -2522 3624 3455 272 263 149 18 chr13 1115963 1116077 -100757092 + MLT1K LTR MaLR 87 230 -358 1830 172 7 0 chr13 1116230 1116520 -100756649 - AluJb SINE Alu -20 292 1 2879 175 98 73 chr13 1116520 1116610 -100756559 - L1MDa LINE L1 -4577 1963 1877 2519 79 3 0 chr13 1116610 1116913 -100756256 - AluSg SINE Alu -6 304 1 2879 175 98 73 chr13 1116913 1117192 -100755977 - L1MDa LINE L1 -4663 1877 1606 432 0 0 0 chr13 1117192 1117240 -100755929 + (TA)n Simple_repeat Simple_repeat 2 49 0 2050 104 0 0 chr13 1117241 1117501 -100755668 - AluSg SINE Alu -16 294 35 2879 175 98 73 chr13 1117501 1117673 -100755496 - L1MDa LINE L1 -4934 1606 1440 2357 99 0 0 chr13 1117673 1117967 -100755202 - AluSc SINE Alu -15 294 1 2879 175 98 73 chr13 1117967 1117988 -100755181 - L1MDa LINE L1 -5100 1440 1421 2151 124 0 13 chr13 1117988 1118286 -100754883 - AluSx SINE Alu -18 294 1 2879 175 98 73 chr13 1118286 1118713 -100754456 - L1MDa LINE L1 -5119 1421 945 380 71 18 0 chr13 1119078 1119134 -100754035 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 200 328 0 0 chr13 1119134 1119195 -100753974 - L2 LINE L2 -9 3263 3203 266 186 29 0 chr13 1119359 1119429 -100753740 + GA-rich Low_complexity Low_complexity 3 74 0 1804 162 154 0 chr13 1120546 1120917 -100752252 - MSTA LTR MaLR 0 428 1 350 153 0 71 chr13 1120917 1121002 -100752167 - MSTA-int LTR MaLR 0 1580 1502 2319 88 0 10 chr13 1121002 1121309 -100751860 - AluY SINE Alu -7 304 1 2671 43 0 7 chr13 1121476 1121778 -100751391 - AluY SINE Alu -11 300 1 324 0 0 0 chr13 1122504 1122540 -100750629 + (CA)n Simple_repeat Simple_repeat 2 37 0 700 196 0 14 chr13 1122560 1122703 -100750466 + FLAM_C SINE Alu 3 143 0 334 302 100 4 chr13 1122710 1122904 -100750265 + HAL1 LINE L1 1105 3200 -1203 348 153 0 112 chr13 1124240 1124338 -100748831 + L1ME4a LINE L1 6035 6121 0 1313 176 179 3 chr13 1124344 1124640 -100748529 + MER7A DNA MER2_type 1 346 0 1136 191 120 32 chr13 1124717 1125058 -100748111 + MLT1A2 LTR MaLR 2 372 -2 536 197 0 16 chr13 1125474 1125601 -100747568 + FLAM_A SINE Alu 17 141 -1 1218 151 82 0 chr13 1125734 1125966 -100747203 + LTR23 LTR ERV1 2 252 -185 411 178 0 0 chr13 1125978 1126051 -100747118 + FLAM SINE Alu 46 118 -15 892 91 57 62 chr13 1126057 1126197 -100746972 + LTR23 LTR ERV1 245 385 -52 1962 132 0 55 chr13 1126197 1126523 -100746646 - AluSx SINE Alu -4 308 1 892 91 57 62 chr13 1126523 1126558 -100746611 + LTR23 LTR ERV1 385 419 -18 1879 82 71 0 chr13 1126559 1126841 -100746328 - AluSx SINE Alu 0 311 12 251 373 8 0 chr13 1127801 1127927 -100745242 - Charlie1 DNA MER1_type -2 2759 2633 1373 186 12 0 chr13 1127928 1128181 -100744988 + AluJo SINE Alu 41 296 -16 1540 156 62 28 chr13 1128259 1128443 -100744726 - AluJb SINE Alu -13 299 100 2217 98 21 0 chr13 1128443 1128729 -100744440 + AluY SINE Alu 1 292 -19 1540 156 62 28 chr13 1128729 1128833 -100744336 - AluJb SINE Alu -212 100 1 1034 276 60 10 chr13 1128836 1129234 -100743935 - LTR33 LTR ERVL -94 427 10 27 0 0 0 chr13 1129583 1129610 -100743559 + AT_rich Low_complexity Low_complexity 1 27 0 2158 136 3 0 chr13 1131092 1131394 -100741775 + AluSx SINE Alu 1 303 -9 1964 127 99 0 chr13 1132482 1132766 -100740403 - AluSx SINE Alu 0 312 1 1690 185 12 0 chr13 1132847 1133101 -100740068 - AluSx SINE Alu -55 257 1 396 171 14 0 chr13 1133104 1133174 -100739995 - AluJ/FRAM SINE Alu -5 297 227 2111 128 3 0 chr13 1133199 1133496 -100739673 + AluSx SINE Alu 5 302 -10 413 273 101 22 chr13 1133496 1133635 -100739534 - MER58A DNA MER1_type -33 191 42 2345 66 0 14 chr13 1133956 1134271 -100738898 - AluY SINE Alu 0 311 1 1554 176 54 7 chr13 1134271 1134550 -100738619 - AluJb SINE Alu -17 295 4 590 160 0 0 chr13 1134805 1134905 -100738264 + AluJ/FLAM SINE Alu 2 101 -211 21 0 0 0 chr13 1136173 1136194 -100736975 + AT_rich Low_complexity Low_complexity 1 21 0 488 234 64 28 chr13 1137455 1137596 -100735573 + LTR42 LTR ERVL 1 146 -349 495 152 0 0 chr13 1137596 1137675 -100735494 + AluJb SINE Alu 210 288 -24 244 131 82 0 chr13 1137686 1137747 -100735422 + T-rich Low_complexity Low_complexity 4 69 0 204 288 0 0 chr13 1139859 1139932 -100733237 + T-rich Low_complexity Low_complexity 1 73 0 205 111 74 0 chr13 1139938 1139992 -100733177 + (TA)n Simple_repeat Simple_repeat 1 58 0 2107 120 0 0 chr13 1139992 1140266 -100732903 - AluSx SINE Alu -26 286 13 1279 167 94 45 chr13 1140287 1140575 -100732594 - AluJo SINE Alu -10 302 1 2092 139 7 0 chr13 1140581 1140882 -100732287 - AluSx SINE Alu -9 303 1 799 199 165 79 chr13 1140892 1141158 -100732011 - AluJo SINE Alu -12 290 2 1248 296 60 46 chr13 1141162 1141232 -100731937 - L1MC4 LINE L1 0 8042 7974 1788 195 10 3 chr13 1141232 1141530 -100731639 + AluJo SINE Alu 7 306 -6 1248 296 60 46 chr13 1141530 1142176 -100730993 - L1MC4 LINE L1 -68 7974 7316 1705 186 28 3 chr13 1142199 1142490 -100730679 + AluSx SINE Alu 1 298 -14 1145 184 87 5 chr13 1142502 1142709 -100730460 + AluJo SINE Alu 88 311 -1 711 200 0 0 chr13 1142712 1142842 -100730327 - AluJo/FLAM SINE Alu -172 130 1 659 256 45 76 chr13 1142843 1143132 -100730037 - L1MC4 LINE L1 -823 7219 6940 2335 111 3 0 chr13 1143326 1143633 -100729536 + AluSx SINE Alu 5 312 0 1941 130 23 27 chr13 1144502 1144649 -100728520 - AluSx SINE Alu -12 300 154 5738 136 27 32 chr13 1144649 1145726 -100727443 + MER11C LTR ERVK 1 1071 0 1941 130 23 27 chr13 1145726 1145879 -100727290 - AluSx SINE Alu -158 154 1 760 118 30 7 chr13 1145902 1146037 -100727132 - L1MB2 LINE L1 -4 6167 6030 663 148 0 33 chr13 1146059 1146181 -100726988 + FLAM_C SINE Alu 16 133 -10 1152 193 23 42 chr13 1146199 1146464 -100726705 - L1MB2 LINE L1 -188 5995 5736 1624 197 38 0 chr13 1146464 1146754 -100726415 - AluJo SINE Alu -8 304 4 1098 256 37 8 chr13 1146758 1147109 -100726060 - L1MB2 LINE L1 -941 5205 4845 240 258 62 31 chr13 1148178 1148275 -100724894 + MER5A DNA MER1_type 8 107 -82 2157 141 0 0 chr13 1151732 1152030 -100721139 - AluSx SINE Alu -9 303 6 1862 167 0 13 chr13 1152101 1152401 -100720768 + AluJo SINE Alu 1 296 -16 1507 216 7 7 chr13 1152976 1153268 -100719901 - AluJo SINE Alu -18 294 3 268 308 10 0 chr13 1154285 1154389 -100718780 + MIR SINE MIR 61 165 -97 505 179 109 98 chr13 1159478 1159567 -100713602 - L1MB8 LINE L1 -37 6141 6054 1908 162 20 0 chr13 1159567 1159863 -100713306 - AluSx SINE Alu -8 304 3 505 179 109 98 chr13 1159863 1159957 -100713212 - L1MB8 LINE L1 -124 6054 5956 1673 233 55 37 chr13 1159957 1160446 -100712723 + MLT1D LTR MaLR 1 498 -7 2063 198 40 106 chr13 1160452 1161391 -100711778 + MLT1D-int LTR MaLR 2 875 -496 3216 168 58 37 chr13 1161568 1161608 -100711561 - L1MB8 LINE L1 -205 5973 5935 2051 134 3 0 chr13 1161608 1161906 -100711263 - AluSg SINE Alu -11 299 1 3216 168 58 37 chr13 1161906 1162313 -100710856 - L1MB8 LINE L1 -243 5935 5538 1537 166 68 7 chr13 1162313 1162591 -100710578 + AluSx SINE Alu 2 296 -16 3216 168 58 37 chr13 1162591 1163113 -100710056 - L1MB8 LINE L1 -640 5538 4981 2166 111 0 20 chr13 1163255 1163552 -100709617 + AluSg SINE Alu 5 295 -15 507 138 0 0 chr13 1163990 1164070 -100709099 + FLAM_C SINE Alu 64 143 0 1169 180 28 14 chr13 1164553 1164770 -100708399 - AluJo SINE Alu -11 301 82 2567 47 0 7 chr13 1165111 1165410 -100707759 - AluY SINE Alu -14 297 1 1726 156 10 34 chr13 1165475 1165770 -100707399 + AluJb SINE Alu 1 288 -24 1635 154 18 18 chr13 1165802 1166088 -100707081 + AluJo SINE Alu 14 299 -13 435 131 0 0 chr13 1166195 1166256 -100706913 - U6 snRNA snRNA -46 61 1 283 298 63 63 chr13 1166557 1166873 -100706296 + L2 LINE L2 1695 2010 -1304 892 249 139 79 chr13 1166997 1167059 -100706110 - L2 LINE L2 0 3313 3256 791 190 0 29 chr13 1167059 1167196 -100705973 + FLAM_C SINE Alu 1 133 0 892 249 139 79 chr13 1167196 1167395 -100705774 - L2 LINE L2 -57 3256 3070 1290 201 129 8 chr13 1167395 1167658 -100705511 - AluJo SINE Alu -7 295 1 1653 183 3 29 chr13 1167659 1167965 -100705204 - AluJo SINE Alu -14 298 1 892 249 139 79 chr13 1167965 1168181 -100704988 - L2 LINE L2 -242 3071 2804 697 291 25 42 chr13 1168666 1168951 -100704218 - L2 LINE L2 -757 2557 2278 513 154 0 0 chr13 1169118 1169196 -100703973 - MADE1 DNA Mariner 0 80 3 1743 174 14 0 chr13 1170135 1170428 -100702741 + AluJb SINE Alu 1 297 -15 2109 117 17 10 chr13 1170432 1170731 -100702438 + AluSq SINE Alu 1 301 -12 2235 116 0 16 chr13 1171897 1172208 -100700961 + AluSx SINE Alu 1 306 -6 327 179 43 0 chr13 1172208 1172348 -100700821 + (TA)n Simple_repeat Simple_repeat 1 146 0 2159 114 0 0 chr13 1172777 1173058 -100700111 - AluSx SINE Alu -15 297 17 1654 164 32 0 chr13 1173779 1174059 -100699110 + AluJo SINE Alu 1 289 -23 900 187 94 0 chr13 1174141 1174312 -100698857 - MER5A DNA MER1_type 0 189 3 309 225 162 42 chr13 1174558 1174608 -100698561 + L1MC5 LINE L1 7609 7652 -309 1806 155 7 0 chr13 1174608 1174879 -100698290 + AluSx SINE Alu 6 278 -34 309 225 162 42 chr13 1174879 1175019 -100698150 + L1MC5 LINE L1 7652 7822 -139 1101 147 17 6 chr13 1175020 1175197 -100697972 + AluSg/x SINE Alu 127 305 -7 1538 223 0 0 chr13 1175203 1175494 -100697675 + AluJb SINE Alu 3 293 -19 2116 116 10 3 chr13 1175548 1175840 -100697329 + AluSq SINE Alu 1 294 -19 1981 161 0 3 chr13 1175882 1176187 -100696982 - AluSx SINE Alu -8 304 1 315 336 212 12 chr13 1176239 1176498 -100696671 - L3 LINE CR1 -72 1505 1195 2009 156 0 0 chr13 1176952 1177247 -100695922 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr13 1178235 1178259 -100694910 + AT_rich Low_complexity Low_complexity 1 24 0 607 280 104 45 chr13 1178427 1178763 -100694406 + L2 LINE L2 2077 2432 -882 1630 135 21 77 chr13 1178863 1179190 -100693979 + AluJb SINE Alu 1 309 -3 273 356 48 34 chr13 1179232 1179440 -100693729 - L2 LINE L2 -76 3196 2986 1794 164 20 0 chr13 1179748 1180040 -100693129 - AluJo SINE Alu -14 298 1 21 0 0 0 chr13 1180914 1180935 -100692234 + AT_rich Low_complexity Low_complexity 1 21 0 657 151 0 0 chr13 1181507 1181600 -100691569 + AluJ/FLAM SINE Alu 2 94 -218 291 157 0 0 chr13 1181636 1181687 -100691482 + (CA)n Simple_repeat Simple_repeat 2 52 0 1881 164 0 3 chr13 1181695 1181987 -100691182 - AluSx SINE Alu -21 291 1 895 169 48 6 chr13 1182003 1182169 -100691000 + FRAM SINE Alu 1 165 -11 234 0 0 0 chr13 1232385 1232411 -100640758 + (CCA)n Simple_repeat Simple_repeat 1 26 0 830 139 16 0 chr13 1232467 1232596 -100640573 - AluJb SINE Alu -181 131 1 488 208 47 0 chr13 1232597 1232726 -100640443 + L1M4 LINE L1 4054 4188 -1958 1622 142 67 8 chr13 1232749 1233016 -100640153 + AluSq SINE Alu 3 285 -28 189 0 0 0 chr13 1233025 1233046 -100640123 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 999 168 12 6 chr13 1233046 1233213 -100639956 + FRAM SINE Alu 2 169 -7 23 33 0 0 chr13 1233351 1233381 -100639788 + AT_rich Low_complexity Low_complexity 1 30 0 2132 114 0 7 chr13 1233390 1233687 -100639482 + AluSx SINE Alu 1 295 -17 1996 82 0 0 chr13 1233921 1234165 -100639004 + AluSx SINE Alu 56 299 -13 2015 113 0 3 chr13 1234997 1235279 -100637890 + AluSx SINE Alu 1 281 -31 518 83 0 0 chr13 1235353 1235425 -100637744 - LTR5 LTR ERVK 0 969 898 1871 157 10 0 chr13 1236136 1236429 -100636740 - AluSx SINE Alu -16 296 1 189 0 0 0 chr13 1238007 1238028 -100635141 + (TGGA)n Simple_repeat Simple_repeat 1 21 0 2301 93 0 0 chr13 1239454 1239744 -100633425 + AluSg SINE Alu 3 292 -18 901 157 6 35 chr13 1240161 1240333 -100632836 - AluJb SINE Alu 0 312 146 26 30 0 0 chr13 1240341 1240374 -100632795 + AT_rich Low_complexity Low_complexity 1 33 0 2287 307 42 22 chr13 1240530 1241827 -100631342 - L1M2c LINE L1 -5294 1495 752 1482 158 8 15 chr13 1241927 1242186 -100630983 + L1PA15 LINE L1 5905 6161 -4 394 244 0 76 chr13 1242585 1242716 -100630453 - MIR SINE MIR -55 207 87 654 223 25 69 chr13 1242787 1242989 -100630180 - AluSg/x SINE Alu 0 312 120 396 0 0 0 chr13 1243507 1243551 -100629618 + (TG)n Simple_repeat Simple_repeat 2 45 0 1342 191 8 23 chr13 1243607 1243869 -100629300 + AluJb SINE Alu 32 289 -23 7360 29 2 4 chr13 1244401 1245403 -100627766 + L1PA2 LINE L1 5111 6113 -42 188 111 28 0 chr13 1245664 1245700 -100627469 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1540 212 0 3 chr13 1246617 1246923 -100626246 + AluSq SINE Alu 1 305 -8 11810 75 3 3 chr13 1247079 1248670 -100624499 + L1P LINE L1 3813 5403 -743 1836 110 92 4 chr13 1251160 1251433 -100621736 + AluSg SINE Alu 1 297 -13 10596 37 1 0 chr13 1251979 1253261 -100619908 + L1P LINE L1 2827 4109 -2037 2153 120 0 17 chr13 1253562 1253862 -100619307 - AluSx SINE Alu -17 295 1 1847 172 3 0 chr13 1254649 1254939 -100618230 + AluJo SINE Alu 1 291 -21 20152 159 104 39 chr13 1255374 1259763 -100613406 + L1P LINE L1 1 4673 -1473 1021 108 6 6 chr13 1261300 1261466 -100611703 + L1MA6 LINE L1 6129 6294 -6 1330 190 42 13 chr13 1261473 1261793 -100611376 + L1ME LINE L1 5269 5599 -567 1399 264 60 9 chr13 1261799 1262234 -100610935 + L1MCa LINE L1 22 478 -5948 319 192 20 50 chr13 1262251 1262350 -100610819 + L1MCa LINE L1 443 538 -5888 3772 118 5 0 chr13 1262588 1263180 -100609989 + Tigger1 DNA MER2_type 588 1182 -1236 5311 238 34 28 chr13 1263181 1264704 -100608465 + L1M2c LINE L1 14 1380 -5409 21815 48 45 3 chr13 1264804 1267756 -100605413 - L1P LINE L1 -3070 3076 1 2113 112 3 0 chr13 1268377 1268702 -100604467 + AluSg SINE Alu 1 326 0 203 185 0 19 chr13 1268865 1268919 -100604250 + (CATA)n Simple_repeat Simple_repeat 2 54 0 460 219 0 0 chr13 1269837 1269919 -100603250 + AluS SINE Alu 1 82 -230 1378 115 0 0 chr13 1270019 1270193 -100602976 + AluSp SINE Alu 105 278 -35 2063 191 23 25 chr13 1270217 1270421 -100602748 + L1M4 LINE L1 4650 4853 -1293 2255 129 0 0 chr13 1270421 1270724 -100602445 - AluSx SINE Alu -9 303 1 2063 191 23 25 chr13 1270724 1271036 -100602133 + L1M4 LINE L1 4853 5165 -981 865 169 0 0 chr13 1271054 1271184 -100601985 + AluJb SINE Alu 153 282 -30 23 0 0 53 chr13 1271190 1271205 -100601964 + AT_rich Low_complexity Low_complexity 1 15 -21 1778 117 98 0 chr13 1271205 1271469 -100601700 + AluSx SINE Alu 1 290 -22 23 0 0 53 chr13 1271469 1271491 -100601678 + AT_rich Low_complexity Low_complexity 15 36 0 2173 110 7 20 chr13 1271547 1271847 -100601322 - AluSx SINE Alu -16 296 1 1817 183 7 3 chr13 1272148 1272438 -100600731 + AluJo SINE Alu 1 291 -21 377 249 97 48 chr13 1272487 1272652 -100600517 - L1MC4a LINE L1 -1973 5835 5663 2314 91 7 0 chr13 1272653 1272951 -100600218 - AluSp SINE Alu -13 300 1 1798 127 90 0 chr13 1273069 1273336 -100599833 - AluSx SINE Alu -21 291 1 27 29 0 0 chr13 1273343 1273377 -100599792 + AT_rich Low_complexity Low_complexity 1 34 0 1501 131 0 0 chr13 1273490 1273696 -100599473 - AluSg SINE Alu -90 220 15 1032 81 0 0 chr13 1273698 1273834 -100599335 + AluSc SINE Alu 171 306 -3 1757 87 0 4 chr13 1273982 1274212 -100598957 + AluY SINE Alu 70 298 -13 1772 131 8 4 chr13 1274512 1274772 -100598397 - AluSx SINE Alu -27 285 25 2385 101 0 0 chr13 1274969 1275276 -100597893 + AluSg SINE Alu 1 307 -3 722 180 0 8 chr13 1275550 1275678 -100597491 + FRAM SINE Alu 20 146 -30 2279 85 3 7 chr13 1276312 1276607 -100596562 - AluSg SINE Alu -16 294 1 22 35 0 0 chr13 1276960 1276989 -100596180 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 1277072 1277099 -100596070 + AT_rich Low_complexity Low_complexity 1 27 0 275 252 37 19 chr13 1277300 1277407 -100595762 - MER104 DNA Tc2 -61 119 11 23 78 0 0 chr13 1281036 1281087 -100592082 + AT_rich Low_complexity Low_complexity 1 51 0 317 169 15 15 chr13 1282549 1282614 -100590555 + AluJo SINE Alu 71 135 -167 180 77 0 0 chr13 1283495 1283521 -100589648 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 235 279 23 35 chr13 1284353 1284439 -100588730 - L2 LINE L2 0 3313 3229 766 220 57 17 chr13 1284489 1284666 -100588503 - MER5A DNA MER1_type -1 188 5 480 154 13 0 chr13 1285371 1285449 -100587720 - AluJ/FLAM SINE Alu -233 79 1 643 263 83 4 chr13 1285475 1285703 -100587466 + Charlie1 DNA MER1_type 2275 2520 -241 267 206 99 84 chr13 1285774 1285905 -100587264 + Charlie1 DNA MER1_type 2623 2755 -6 810 161 27 0 chr13 1286116 1286265 -100586904 + MER46B DNA MER2_type 26 53 -183 683 203 16 0 chr13 1286269 1286392 -100586777 + FLAM_C SINE Alu 2 126 -7 2300 70 0 3 chr13 1286411 1286697 -100586472 + AluY SINE Alu 26 310 -1 1105 150 0 5 chr13 1286701 1286888 -100586281 + MER46B DNA MER2_type 48 233 -3 861 121 0 0 chr13 1287562 1287686 -100585483 + AluSq/x SINE Alu 1 124 -189 238 146 0 0 chr13 1287686 1287734 -100585435 + Alu SINE Alu 252 299 0 1928 130 10 30 chr13 1287938 1288078 -100585091 + AluSx SINE Alu 1 142 -170 2131 125 3 3 chr13 1288078 1288383 -100584786 + AluSx SINE Alu 1 305 -7 1928 130 10 30 chr13 1288383 1288542 -100584627 + AluSx SINE Alu 142 294 -18 692 257 7 0 chr13 1288552 1288704 -100584465 + FRAM SINE Alu 1 153 -23 4414 176 40 5 chr13 1289062 1289933 -100583236 + L1MC1 LINE L1 5415 6316 -17 22 0 0 0 chr13 1289985 1290007 -100583162 + AT_rich Low_complexity Low_complexity 1 22 0 556 159 28 9 chr13 1290013 1290120 -100583049 - FLAM_A SINE Alu -33 109 1 694 160 0 17 chr13 1290512 1290631 -100582538 - FLAM_A SINE Alu -12 121 5 25 31 0 0 chr13 1291929 1291961 -100581208 + AT_rich Low_complexity Low_complexity 1 32 0 1684 164 14 24 chr13 1292867 1293159 -100580010 + AluJo SINE Alu 1 289 -23 2247 119 0 0 chr13 1293164 1293474 -100579695 + AluSq SINE Alu 1 310 -3 455 134 15 0 chr13 1293480 1293547 -100579622 + AluS SINE Alu 1 68 -245 428 251 48 24 chr13 1293649 1293816 -100579353 - Charlie1a DNA MER1_type -579 876 706 * 1025 274 80 56 chr13 1293810 1294350 -100578819 - Charlie1a DNA MER1_type -902 553 1 186 43 0 0 chr13 1294556 1294579 -100578590 + (T)n Simple_repeat Simple_repeat 1 23 0 548 211 18 0 chr13 1294683 1294792 -100578377 + MIR SINE MIR 64 174 -88 2023 119 0 45 chr13 1296267 1296459 -100576710 - AluSq SINE Alu -17 296 122 2453 80 0 6 chr13 1296459 1296770 -100576399 - AluY SINE Alu -2 309 1 2023 119 0 45 chr13 1296770 1296887 -100576282 - AluSq SINE Alu -191 122 1 1759 168 7 10 chr13 1296984 1297282 -100575887 + AluJo SINE Alu 1 297 -15 2143 98 21 3 chr13 1298297 1298583 -100574586 + AluSg SINE Alu 1 291 -19 423 127 0 0 chr13 1298591 1298662 -100574507 - MER51-int LTR ERV1 -4616 3200 3130 881 99 106 7 chr13 1298689 1298840 -100574329 - MER51B LTR ERV1 0 377 212 2127 113 7 3 chr13 1298846 1299137 -100574032 - AluSx SINE Alu -20 292 1 493 278 40 30 chr13 1299208 1299452 -100573717 - L2 LINE L2 -1011 2303 1988 2239 112 7 0 chr13 1299489 1299784 -100573385 - AluSq SINE Alu -16 297 1 1831 175 0 9 chr13 1299826 1300141 -100573028 - AluJb SINE Alu 0 312 1 2365 52 45 0 chr13 1300352 1300638 -100572531 + AluSx SINE Alu 1 299 -13 2285 106 6 3 chr13 1300706 1301018 -100572151 + AluSq SINE Alu 1 313 0 23 0 0 0 chr13 1301108 1301131 -100572038 + AT_rich Low_complexity Low_complexity 1 23 0 1348 170 48 65 chr13 1301562 1301788 -100571381 + AluJb SINE Alu 1 222 -90 2148 116 7 7 chr13 1301788 1302091 -100571078 - AluSq SINE Alu -10 303 1 1348 170 48 65 chr13 1302091 1302158 -100571011 + AluJb SINE Alu 222 289 -23 843 142 0 22 chr13 1302375 1302509 -100570660 - FLAM_C SINE Alu -1 132 2 1395 171 114 11 chr13 1302519 1302799 -100570370 - AluSx SINE Alu -3 309 1 2145 100 7 0 chr13 1302936 1303226 -100569943 - AluSx SINE Alu -20 292 1 608 125 29 0 chr13 1303228 1303332 -100569837 - MER2 DNA MER2_type -119 226 120 * 1038 161 92 9 chr13 1303330 1303548 -100569621 - MER2 DNA MER2_type -109 236 1 371 182 172 152 chr13 1303548 1303762 -100569407 + L1MC4 LINE L1 6479 6702 -1340 1623 174 14 31 chr13 1303762 1304049 -100569120 - AluJo SINE Alu -30 282 1 371 182 172 152 chr13 1304049 1304131 -100569038 + L1MC4 LINE L1 6702 6781 -1261 2007 189 78 69 chr13 1304132 1304597 -100568572 + L1MC4a LINE L1 7107 7566 -242 2203 110 0 0 chr13 1304597 1304879 -100568290 + 7SLRNA srpRNA srpRNA 20 301 -19 221 83 28 0 chr13 1304879 1304915 -100568254 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2007 189 78 69 chr13 1304915 1305088 -100568081 + L1MC4a LINE L1 7565 7752 -56 2459 81 0 0 chr13 1305141 1305450 -100567719 - AluY SINE Alu -2 309 1 21 36 0 0 chr13 1306961 1306989 -100566180 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 1308054 1308077 -100565092 + AT_rich Low_complexity Low_complexity 1 23 0 1768 174 17 3 chr13 1308508 1308807 -100564362 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr13 1310070 1310092 -100563077 + AT_rich Low_complexity Low_complexity 1 22 0 298 241 11 0 chr13 1310780 1310867 -100562302 + Charlie5 DNA MER1_type 26 113 -2499 * 1025 184 136 9 chr13 1310858 1311189 -100561980 + Charlie5 DNA MER1_type 2243 2615 0 2260 105 3 0 chr13 1311575 1311870 -100561299 + AluSx SINE Alu 1 296 -16 2447 54 7 3 chr13 1312390 1312687 -100560482 - AluSp SINE Alu -15 298 1 1024 173 0 0 chr13 1312687 1312843 -100560326 - AluSg/x SINE Alu -15 297 142 2237 107 3 0 chr13 1312852 1313143 -100560026 - AluSp SINE Alu -11 302 11 233 263 161 15 chr13 1313180 1313317 -100559852 - MIR SINE MIR -30 232 76 2290 92 0 22 chr13 1313467 1313782 -100559387 - AluY SINE Alu -3 308 1 27 49 0 0 chr13 1314086 1314127 -100559042 + AT_rich Low_complexity Low_complexity 1 41 0 423 0 0 0 chr13 1314517 1314564 -100558605 + (TG)n Simple_repeat Simple_repeat 2 48 0 2364 113 0 0 chr13 1315583 1315892 -100557277 - AluSq SINE Alu -4 309 1 619 183 122 0 chr13 1316265 1316380 -100556789 - FLAM_A SINE Alu -4 129 1 217 308 131 19 chr13 1316529 1316636 -100556533 - MER5B DNA MER1_type 0 178 60 992 187 43 66 chr13 1316846 1317103 -100556066 - AluJo SINE Alu -39 273 23 455 178 28 161 chr13 1317320 1317368 -100555801 + MER58B DNA MER1_type 186 239 -2181 206 32 32 0 chr13 1317368 1317399 -100555770 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 455 178 28 161 chr13 1317399 1317530 -100555639 + MER58B DNA MER1_type 239 341 0 2119 104 0 48 chr13 1317813 1317976 -100555193 - AluSg SINE Alu -16 294 151 2325 90 3 7 chr13 1317976 1318286 -100554883 - AluSc SINE Alu 0 309 1 2119 104 0 48 chr13 1318286 1318431 -100554738 - AluSg SINE Alu -159 151 1 26 0 0 0 chr13 1319860 1319886 -100553283 + AT_rich Low_complexity Low_complexity 1 26 0 2188 88 7 11 chr13 1319888 1320173 -100552996 - AluSg SINE Alu -26 284 1 488 161 58 0 chr13 1320435 1320522 -100552647 - MER58B DNA MER1_type 0 341 250 2276 204 87 15 chr13 1320573 1321112 -100552057 + L1ME1 LINE L1 5557 6134 -32 1816 127 8 4 chr13 1321112 1321380 -100551789 + AluSq SINE Alu 1 269 -44 2418 74 10 3 chr13 1321518 1321816 -100551353 - AluSq SINE Alu -13 300 1 844 297 67 23 chr13 1321834 1322177 -100550992 + L2 LINE L2 174 531 -2783 1109 75 0 0 chr13 1322303 1322436 -100550733 + AluSq/x SINE Alu 1 133 -179 2393 82 13 0 chr13 1322437 1322742 -100550427 + AluY SINE Alu 1 309 -2 2219 105 0 3 chr13 1322749 1323044 -100550125 + AluSx SINE Alu 1 294 -18 397 306 10 31 chr13 1323044 1323237 -100549932 + L2 LINE L2 1786 1974 -1340 280 233 82 0 chr13 1323245 1323318 -100549851 + MIR SINE MIR 112 190 -72 1967 115 0 0 chr13 1323327 1323588 -100549581 + AluSq SINE Alu 1 261 -52 462 36 0 0 chr13 1323609 1323665 -100549504 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 2445 86 10 0 chr13 1323682 1323986 -100549183 + AluY SINE Alu 1 307 -4 2041 124 0 0 chr13 1324016 1324320 -100548849 + AluSx SINE Alu 1 304 0 207 241 152 73 chr13 1324336 1324527 -100548642 + L2 LINE L2 1978 2183 -1131 511 106 75 32 chr13 1324614 1324708 -100548461 - MER20 DNA MER1_type -73 146 49 1406 126 5 0 chr13 1324718 1324909 -100548260 - AluSg/x SINE Alu -22 290 99 1187 251 17 14 chr13 1325046 1325333 -100547836 + AluJo SINE Alu 1 288 -14 257 108 290 11 chr13 1325485 1325578 -100547591 - Charlie1 DNA MER1_type -6 2755 2637 1328 205 3 53 chr13 1325580 1325635 -100547534 + AluJo SINE Alu 1 57 -255 2088 132 3 3 chr13 1325635 1325930 -100547239 + AluSx SINE Alu 1 295 -17 1328 205 3 53 chr13 1325930 1326177 -100546992 + AluJo SINE Alu 57 288 -24 1772 129 0 50 chr13 1326187 1326466 -100546703 + AluSx SINE Alu 3 267 -45 2349 69 14 0 chr13 1326519 1326807 -100546362 + AluY SINE Alu 3 294 -17 373 243 33 92 chr13 1326807 1326853 -100546316 - L1ME2 LINE L1 -21 6143 6096 1561 191 38 17 chr13 1326853 1327146 -100546023 - AluJb SINE Alu -13 299 1 373 243 33 92 chr13 1327146 1327251 -100545918 - L1ME2 LINE L1 -68 6096 6001 2324 93 0 3 chr13 1327254 1327556 -100545613 - AluY SINE Alu -10 301 1 1177 172 14 28 chr13 1327726 1327941 -100545228 + MER2 DNA MER2_type 1 212 -133 2216 93 3 50 chr13 1327945 1328268 -100544901 - AluSg SINE Alu -2 308 1 691 171 0 66 chr13 1328279 1328431 -100544738 - FLAM_C SINE Alu 0 143 2 245 196 0 54 chr13 1328479 1328490 -100544679 + MER2 DNA MER2_type 268 278 -67 2032 139 0 16 chr13 1328490 1328807 -100544362 - AluSx SINE Alu 0 312 1 245 196 0 54 chr13 1328807 1328851 -100544318 + MER2 DNA MER2_type 278 320 -25 348 175 20 4 chr13 1329364 1329427 -100543742 + AluJ/FLAM SINE Alu 5 60 -242 2086 118 0 10 chr13 1329660 1329957 -100543212 + AluY SINE Alu 1 294 -17 465 200 11 0 chr13 1329964 1330059 -100543110 + MER66B LTR ERV1 295 390 -96 1151 133 0 22 chr13 1330060 1330077 -100543092 + AluSq SINE Alu 120 136 -177 2325 101 0 7 chr13 1330077 1330383 -100542786 + AluSg SINE Alu 1 304 -6 1151 133 0 22 chr13 1330383 1330545 -100542624 + AluSq SINE Alu 136 295 -18 2152 107 3 3 chr13 1330592 1330891 -100542278 + AluSc SINE Alu 2 300 -9 292 266 150 9 chr13 1330917 1331030 -100542139 + MIR SINE MIR 16 144 -64 371 258 148 19 chr13 1331036 1331191 -100541978 + L1MB4 LINE L1 5444 5618 -2190 231 191 0 0 chr13 1331268 1331331 -100541838 - L1MC4 LINE L1 -1340 6702 6640 1693 178 20 13 chr13 1331332 1331635 -100541534 - AluJb SINE Alu -7 305 1 1165 123 0 98 chr13 1331659 1331863 -100541306 + AluSx SINE Alu 1 184 -128 261 94 0 0 chr13 1331863 1331895 -100541274 + Alu SINE Alu 18 49 -251 2218 98 3 0 chr13 1331895 1332180 -100540989 + AluSq SINE Alu 18 303 -10 1225 141 0 0 chr13 1332182 1332359 -100540810 + AluSq SINE Alu 136 312 -1 2264 105 3 0 chr13 1332541 1332837 -100540332 - AluSx SINE Alu -15 297 1 706 153 0 8 chr13 1332860 1332978 -100540191 - AluSg/x SINE Alu -13 297 181 406 203 0 0 chr13 1332979 1333043 -100540126 - AluS SINE Alu -239 64 1 982 224 97 52 chr13 1333069 1333418 -100539751 - MLT1A1 LTR MaLR 0 365 1 853 224 0 6 chr13 1333524 1333694 -100539475 + FRAM SINE Alu 1 169 -7 1805 138 35 18 chr13 1333697 1333997 -100539172 + L1MB4 LINE L1 5831 6139 -41 2419 67 0 20 chr13 1333997 1334296 -100538873 + AluSc SINE Alu 1 293 -16 1805 138 35 18 chr13 1334296 1334335 -100538834 + L1MB4 LINE L1 6139 6176 -4 26 0 0 27 chr13 1334352 1334374 -100538795 + AT_rich Low_complexity Low_complexity 1 23 -13 1675 140 98 0 chr13 1334374 1334638 -100538531 - AluSx SINE Alu -22 290 1 26 0 0 27 chr13 1334638 1334652 -100538517 + AT_rich Low_complexity Low_complexity 23 36 0 870 169 0 0 chr13 1334658 1334788 -100538381 - AluJb SINE Alu -30 282 153 2211 197 23 25 chr13 1334806 1335118 -100538051 - L1M4 LINE L1 -981 5165 4853 2255 129 0 0 chr13 1335118 1335421 -100537748 + AluSx SINE Alu 1 303 -9 2211 197 23 25 chr13 1335421 1335631 -100537538 - L1M4 LINE L1 -1293 4853 4644 1451 98 16 5 chr13 1336060 1336253 -100536916 + AluSq SINE Alu 107 301 -12 1816 127 8 4 chr13 1336391 1336659 -100536510 - AluSq SINE Alu -44 269 1 2276 204 87 15 chr13 1336659 1337198 -100535971 - L1ME1 LINE L1 -32 6134 5557 488 161 58 0 chr13 1337249 1337336 -100535833 + MER58B DNA MER1_type 250 341 0 2311 67 7 7 chr13 1337598 1337924 -100535245 + AluSg SINE Alu 1 326 0 623 126 11 0 chr13 1339387 1339482 -100533687 - AluJo SINE Alu -177 135 40 1319 96 138 0 chr13 1339811 1339999 -100533170 + AluSg/x SINE Alu 82 295 -15 1849 111 62 21 chr13 1340016 1340304 -100532865 - AluJo SINE Alu -12 300 1 6568 70 7 60 chr13 1340354 1341665 -100531504 - SVA Other Other -551 1382 433 272 183 19 135 chr13 1341797 1341833 -100531336 - MIR SINE MIR -111 151 112 2378 87 0 16 chr13 1341833 1342145 -100531024 + AluY SINE Alu 1 307 -4 272 183 19 135 chr13 1342145 1342212 -100530957 - MIR SINE MIR -150 112 60 2120 117 6 22 chr13 1342225 1342542 -100530627 + AluSx SINE Alu 1 312 0 2170 116 3 7 chr13 1342597 1342898 -100530271 + AluSx SINE Alu 1 300 -12 2125 120 10 0 chr13 1342966 1343267 -100529902 - AluSx SINE Alu -8 304 1 1795 103 84 7 chr13 1344245 1344518 -100528651 + AluSx SINE Alu 5 298 -14 1123 171 11 0 chr13 1344518 1344699 -100528470 + AluSg/x SINE Alu 108 290 -22 2012 124 3 3 chr13 1344709 1345008 -100528161 + AluSx SINE Alu 1 299 -13 522 125 0 0 chr13 1345074 1345146 -100528023 + FRAM SINE Alu 22 93 -83 34 24 0 0 chr13 1345156 1345197 -100527972 + AT_rich Low_complexity Low_complexity 1 41 0 2012 92 9 92 chr13 1345226 1345432 -100527737 - AluSx SINE Alu -5 307 138 1609 115 0 0 chr13 1345432 1345641 -100527528 - AluSx SINE Alu -103 209 1 2012 92 9 92 chr13 1345641 1345769 -100527400 - AluSx SINE Alu -174 138 1 2628 197 100 66 chr13 1345770 1346382 -100526787 - L1ME2 LINE L1 -57 6107 5517 1994 97 45 39 chr13 1346382 1346585 -100526584 - AluSp SINE Alu -2 311 104 2458 49 7 0 chr13 1346585 1346873 -100526296 - AluY SINE Alu -21 290 1 1994 97 45 39 chr13 1346873 1346978 -100526191 - AluSp SINE Alu -209 104 1 1729 167 3 23 chr13 1346987 1347292 -100525877 - AluSx SINE Alu -11 301 3 2628 197 100 66 chr13 1347292 1347476 -100525693 - L1ME2 LINE L1 -654 5510 5334 2449 72 3 7 chr13 1347476 1347781 -100525388 - AluY SINE Alu -7 304 1 2628 197 100 66 chr13 1347781 1347887 -100525282 - L1ME2 LINE L1 -830 5334 5233 1749 171 0 37 chr13 1347887 1348208 -100524961 - AluJo SINE Alu 0 312 4 2628 197 100 66 chr13 1348208 1348484 -100524685 - L1ME2 LINE L1 -931 5233 4882 345 270 92 0 chr13 1348508 1348660 -100524509 - L1ME2 LINE L1 -1330 4816 4651 31 0 0 0 chr13 1348956 1348987 -100524182 + AT_rich Low_complexity Low_complexity 1 31 0 341 104 0 0 chr13 1348987 1349035 -100524134 - AluSq/x SINE Alu -170 133 86 978 173 9 64 chr13 1349035 1349255 -100523914 - AluJo SINE Alu -92 220 13 914 218 0 0 chr13 1349267 1349441 -100523728 - AluJb SINE Alu -5 307 134 1404 198 70 4 chr13 1349463 1349736 -100523433 - AluJb SINE Alu -21 291 1 255 31 0 0 chr13 1349741 1349773 -100523396 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1946 148 0 0 chr13 1349773 1350056 -100523113 - AluSx SINE Alu -29 283 1 704 218 46 25 chr13 1350435 1350521 -100522648 + Looper DNA T2_type 65 148 -1410 732 168 64 0 chr13 1350521 1350646 -100522523 + FLAM_A SINE Alu 1 133 0 704 218 46 25 chr13 1350646 1350780 -100522389 + Looper DNA T2_type 148 293 -1265 198 0 0 0 chr13 1350780 1350802 -100522367 + (TAA)n Simple_repeat Simple_repeat 1 22 0 704 218 46 25 chr13 1350802 1350819 -100522350 + Looper DNA T2_type 293 308 -1250 1271 158 5 5 chr13 1350819 1351021 -100522148 - AluSg/x SINE Alu -25 287 86 398 205 37 81 chr13 1351021 1351182 -100521987 + Looper DNA T2_type 284 437 -1121 1282 170 0 19 chr13 1351195 1351407 -100521762 + AluJb SINE Alu 87 294 -18 887 179 25 6 chr13 1351445 1351607 -100521562 - FRAM SINE Alu -1 165 1 1804 158 10 17 chr13 1352130 1352427 -100520742 - AluSx SINE Alu -17 295 1 275 243 153 0 chr13 1352439 1352550 -100520619 - MIR SINE MIR -13 249 122 944 194 0 0 chr13 1352828 1352988 -100520181 + AluJb SINE Alu 139 298 -14 548 129 24 0 chr13 1353028 1353113 -100520056 - AluSp/q SINE Alu -16 297 211 1309 189 62 38 chr13 1353317 1353476 -100519693 - AluJo SINE Alu -9 303 132 2447 73 0 10 chr13 1353476 1353776 -100519393 - AluSg SINE Alu -13 297 1 1309 189 62 38 chr13 1353776 1353907 -100519262 - AluJo SINE Alu -180 132 6 2112 132 0 0 chr13 1353939 1354234 -100518935 - AluSx SINE Alu -14 298 4 2028 131 0 3 chr13 1354606 1354896 -100518273 - AluSx SINE Alu -15 297 9 1173 154 0 10 chr13 1355303 1355498 -100517671 - AluSg/x SINE Alu 0 310 118 2335 92 0 10 chr13 1355628 1355932 -100517237 - AluSx SINE Alu -11 301 1 2536 55 3 0 chr13 1356158 1356450 -100516719 - AluY SINE Alu -18 293 1 1668 105 158 0 chr13 1356698 1356964 -100516205 - MER51B LTR ERV1 -69 308 1 1590 135 0 4 chr13 1356976 1357205 -100515964 - MER51B-int LTR ERV1 -11 7805 7578 893 124 0 0 chr13 1357206 1357327 -100515842 - MER57-int LTR ERV1 -1471 6066 5946 2657 52 0 0 chr13 1357327 1357636 -100515533 - AluY SINE Alu -2 309 1 21 0 0 0 chr13 1357920 1357941 -100515228 + AT_rich Low_complexity Low_complexity 1 21 0 2279 113 3 0 chr13 1358883 1359194 -100513975 - AluSx SINE Alu 0 312 1 652 246 64 6 chr13 1359227 1359398 -100513771 + MER46C DNA MER2_type 69 249 -89 710 181 88 113 chr13 1359967 1360125 -100513044 - MER46A DNA MER2_type -2499 232 79 1652 160 14 18 chr13 1360125 1360431 -100512738 + AluJb SINE Alu 1 305 0 710 181 88 113 chr13 1360431 1360509 -100512660 - MER46A DNA MER2_type -2652 79 1 1983 130 43 0 chr13 1360865 1361164 -100512005 - AluSx SINE Alu 0 312 1 353 199 128 28 chr13 1361973 1362114 -100511055 - L1MC5 LINE L1 -118 7843 7689 397 284 89 78 chr13 1362274 1362391 -100510778 + L2 LINE L2 2593 2707 -607 1750 146 39 0 chr13 1362391 1362671 -100510498 + AluSx SINE Alu 5 295 -17 397 284 89 78 chr13 1362671 1362835 -100510334 + L2 LINE L2 2707 2877 -437 1922 142 3 3 chr13 1362876 1363164 -100510005 - AluSx SINE Alu -24 288 1 1547 149 54 58 chr13 1363265 1363560 -100509609 - AluJo SINE Alu -17 295 2 321 260 154 0 chr13 1363726 1363849 -100509320 - L2 LINE L2 -1 3312 3171 24 0 0 0 chr13 1367571 1367595 -100505574 + AT_rich Low_complexity Low_complexity 1 24 0 2168 101 3 17 chr13 1367595 1367883 -100505286 - AluSx SINE Alu -24 288 5 444 236 61 61 chr13 1368331 1368560 -100504609 - MER106A DNA MER1_type -5 231 3 436 279 91 20 chr13 1368579 1368776 -100504393 - L2 LINE L2 -519 2795 2585 21 0 0 0 chr13 1371052 1371073 -100502096 + AT_rich Low_complexity Low_complexity 1 21 0 1376 220 54 113 chr13 1371272 1371704 -100501465 - L1ME2 LINE L1 -150 6014 5656 1857 154 0 20 chr13 1371704 1372010 -100501159 - AluJo SINE Alu 0 312 13 1376 220 54 113 chr13 1372010 1372299 -100500870 - L1ME2 LINE L1 -508 5656 5352 22 35 0 0 chr13 1372620 1372649 -100500520 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr13 1373383 1373418 -100499751 + AT_rich Low_complexity Low_complexity 1 35 0 1873 167 10 0 chr13 1373567 1373866 -100499303 - AluJo SINE Alu -10 302 1 21 23 0 47 chr13 1374468 1374487 -100498682 + AT_rich Low_complexity Low_complexity 1 19 -22 2068 146 0 0 chr13 1374487 1374789 -100498380 + AluSx SINE Alu 1 302 -10 21 23 0 47 chr13 1374789 1374812 -100498357 + AT_rich Low_complexity Low_complexity 19 41 0 1311 214 85 25 chr13 1375025 1375283 -100497886 + MER2 DNA MER2_type 1 283 -62 1893 170 0 3 chr13 1375283 1375589 -100497580 - AluJb SINE Alu -7 305 1 1311 214 85 25 chr13 1375589 1375647 -100497522 + MER2 DNA MER2_type 283 336 -9 23 0 0 0 chr13 1375686 1375709 -100497460 + AT_rich Low_complexity Low_complexity 1 23 0 1791 180 10 0 chr13 1375748 1376043 -100497126 + AluJb SINE Alu 1 298 -14 259 289 82 30 chr13 1376255 1376390 -100496779 - Charlie7 DNA MER1_type -1 2611 2470 2556 50 3 0 chr13 1377551 1377849 -100495320 - AluY SINE Alu -12 299 1 201 273 40 71 chr13 1378104 1378203 -100494966 + MER5A DNA MER1_type 17 112 -77 400 224 131 3 chr13 1378407 1378529 -100494640 + MER5A DNA MER1_type 4 131 -47 1135 191 179 0 chr13 1381733 1381984 -100491185 - AluSx SINE Alu -16 296 1 192 77 0 0 chr13 1382277 1382303 -100490866 + (T)n Simple_repeat Simple_repeat 1 26 0 2260 95 3 0 chr13 1382359 1382653 -100490516 + AluSp SINE Alu 2 296 -17 1734 124 4 12 chr13 1383682 1383940 -100489229 + AluJb SINE Alu 42 297 -15 2125 118 10 3 chr13 1384951 1385247 -100487922 + AluSx SINE Alu 1 298 -14 868 163 7 0 chr13 1385417 1385564 -100487605 + AluSg/x SINE Alu 139 286 -26 409 269 50 50 chr13 1386546 1386687 -100486482 + L2 LINE L2 3169 3309 -4 263 196 0 0 chr13 1386704 1386750 -100486419 - MER81 DNA DNA -68 46 1 2173 209 83 6 chr13 1387019 1387551 -100485618 + L1MC1 LINE L1 5760 6332 -1 2233 96 0 0 chr13 1387599 1387881 -100485288 - AluSx SINE Alu -30 282 1 319 300 110 10 chr13 1388911 1389011 -100484158 + MIR SINE MIR 40 149 -113 1149 163 39 0 chr13 1390548 1390751 -100482418 + AluJb SINE Alu 64 274 -38 201 359 57 19 chr13 1391418 1391577 -100481592 + L2 LINE L2 3080 3244 -28 1625 161 73 4 chr13 1392221 1392494 -100480675 + AluJo SINE Alu 1 292 -20 2325 55 24 17 chr13 1392522 1392815 -100480354 + AluY SINE Alu 1 295 -16 751 224 6 6 chr13 1393287 1393443 -100479726 + Tigger1 DNA MER2_type 2 157 -2261 * 1045 124 129 16 chr13 1393432 1393626 -100479543 + Tigger1 DNA MER2_type 2202 2417 -1 777 144 30 23 chr13 1393650 1393782 -100479387 - FLAM_A SINE Alu 0 133 1 280 290 99 38 chr13 1393889 1394261 -100478908 + L1M4 LINE L1 4222 4616 -1530 2472 51 3 26 chr13 1394493 1394805 -100478364 + AluY SINE Alu 1 305 -6 1932 158 0 3 chr13 1395082 1395379 -100477790 - AluJb SINE Alu -16 296 1 344 283 147 28 chr13 1396744 1396921 -100476248 - MIR SINE MIR -56 206 9 975 105 7 7 chr13 1397174 1397317 -100475852 - AluSg/x SINE Alu -10 299 157 1112 99 0 7 chr13 1397383 1397525 -100475644 - AluSq/x SINE Alu -170 143 3 2237 102 27 0 chr13 1397618 1397913 -100475256 - AluSx SINE Alu -9 303 1 2298 100 0 3 chr13 1397982 1398283 -100474886 - AluSx SINE Alu -12 300 1 300 195 53 62 chr13 1398330 1398443 -100474726 - L1M4 LINE L1 -1806 4340 4229 993 168 12 6 chr13 1398460 1398627 -100474542 - FRAM SINE Alu -7 169 2 189 0 0 0 chr13 1398627 1398648 -100474521 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1610 142 67 8 chr13 1398657 1398924 -100474245 - AluSq SINE Alu -28 285 3 499 208 47 0 chr13 1398947 1399076 -100474093 - L1M4 LINE L1 -1958 4188 4054 820 139 16 0 chr13 1399077 1399206 -100473963 + AluJb SINE Alu 1 131 -181 234 0 0 0 chr13 1399262 1399288 -100473881 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1622 189 28 0 chr13 1399288 1399567 -100473602 - AluJo SINE Alu -25 287 1 358 268 77 72 chr13 1399652 1399795 -100473374 - L1M4 LINE L1 -2311 3835 3689 2214 114 3 0 chr13 1399795 1400094 -100473075 - AluSp SINE Alu -13 300 1 358 268 77 72 chr13 1400094 1400185 -100472984 - L1M4 LINE L1 -2457 3689 3600 2089 91 21 14 chr13 1400278 1400564 -100472605 - L1PA7 LINE L1 -2 6152 5865 12541 100 20 31 chr13 1400564 1402628 -100470541 - L1P3 LINE L1 -4369 2092 5 2123 114 0 13 chr13 1402644 1402943 -100470226 - AluSg SINE Alu -15 295 1 976 191 12 18 chr13 1403043 1403211 -100469958 - FAM SINE Alu -8 167 1 1961 135 24 3 chr13 1403214 1403510 -100469659 - AluSx SINE Alu -10 302 1 316 253 41 68 chr13 1403769 1403915 -100469254 - L1MEd LINE L1 -5958 161 20 36 0 0 0 chr13 1406139 1406175 -100466994 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr13 1406579 1406615 -100466554 + AT_rich Low_complexity Low_complexity 1 36 0 355 298 18 30 chr13 1406796 1406964 -100466205 - L1ME LINE L1 -376 5745 5580 22 0 0 0 chr13 1407013 1407035 -100466134 + AT_rich Low_complexity Low_complexity 1 22 0 244 342 0 0 chr13 1407919 1408039 -100465130 + T-rich Low_complexity Low_complexity 1 120 0 1963 96 92 0 chr13 1408999 1409271 -100463898 - AluSg SINE Alu -13 297 1 24 0 0 0 chr13 1409774 1409798 -100463371 + AT_rich Low_complexity Low_complexity 1 24 0 321 251 132 53 chr13 1409863 1410106 -100463063 + HAL1b LINE L1 340 601 -747 190 94 62 0 chr13 1410152 1410184 -100462985 - MER5A DNA MER1_type -148 41 8 629 247 136 49 chr13 1410507 1410876 -100462293 + L1MC4a LINE L1 6120 6520 -1288 226 308 100 8 chr13 1410932 1411052 -100462117 + L1MC4 LINE L1 6870 7000 -1042 1588 180 6 29 chr13 1411211 1411527 -100461642 + AluJo SINE Alu 1 309 -3 1134 237 58 13 chr13 1412161 1412473 -100460696 - MER63C DNA MER1_type -552 378 53 2037 134 10 3 chr13 1412826 1412965 -100460204 + AluSx SINE Alu 1 138 -174 2360 95 0 16 chr13 1412965 1413280 -100459889 + AluSq SINE Alu 1 310 -3 2037 134 10 3 chr13 1413280 1413439 -100459730 + AluSx SINE Alu 138 301 -11 849 228 0 6 chr13 1413439 1413619 -100459550 + AluJb SINE Alu 134 312 0 770 189 0 0 chr13 1414091 1414218 -100458951 + FLAM_A SINE Alu 1 127 -6 262 236 112 0 chr13 1414227 1414316 -100458853 - L1ME LINE L1 -518 5603 5505 461 184 146 0 chr13 1414316 1414419 -100458750 + MER58 DNA MER1_type 1 118 -223 723 239 52 14 chr13 1414421 1414634 -100458535 - MIR SINE MIR -11 251 31 1938 142 33 3 chr13 1414635 1414938 -100458231 - AluSx SINE Alu 0 312 1 845 220 163 72 chr13 1414994 1415152 -100458017 + LTR38 LTR ERV1 1 143 -413 2355 104 0 0 chr13 1415152 1415449 -100457720 + AluSg SINE Alu 1 297 -13 845 220 163 72 chr13 1415449 1415653 -100457516 + LTR38 LTR ERV1 143 396 -160 2007 78 0 0 chr13 1415661 1415905 -100457264 - AluSx SINE Alu -13 299 56 2318 76 14 3 chr13 1416139 1416428 -100456741 - AluSc SINE Alu -17 292 1 2476 68 0 0 chr13 1416646 1416941 -100456228 - AluY SINE Alu -16 295 1 477 49 0 0 chr13 1417136 1417197 -100455972 + AluY SINE Alu 1 61 -257 338 172 180 16 chr13 1417310 1417438 -100455731 + L1MC4 LINE L1 7877 8025 -17 366 265 10 29 chr13 1417636 1417738 -100455431 - L2 LINE L2 0 3313 3214 24 32 0 0 chr13 1417953 1417984 -100455185 + AT_rich Low_complexity Low_complexity 1 31 0 1724 160 27 7 chr13 1417984 1418277 -100454892 + AluJb SINE Alu 1 299 -13 2110 98 52 33 chr13 1418613 1418981 -100454188 - THE1C LTR MaLR 0 375 1 2246 71 3 30 chr13 1419225 1419521 -100453648 - AluSg SINE Alu -22 288 1 216 345 0 0 chr13 1419526 1419584 -100453585 - L2 LINE L2 -14 3258 3201 210 277 77 0 chr13 1419770 1419835 -100453334 + L2 LINE L2 3241 3310 -3 234 150 163 25 chr13 1422217 1422297 -100450872 + L1MC4 LINE L1 7002 7172 -716 231 213 33 16 chr13 1422571 1422632 -100450537 + L1MC4 LINE L1 7498 7559 -483 1745 168 0 3 chr13 1422822 1423113 -100450056 + AluJb SINE Alu 1 290 -22 1154 150 102 88 chr13 1423146 1423420 -100449749 + AluJb SINE Alu 2 279 -33 794 100 9 0 chr13 1423420 1423530 -100449639 - THE1C LTR MaLR -3 372 262 4077 64 0 15 chr13 1423530 1424049 -100449120 - MER9 LTR ERVK 0 511 1 8008 85 19 10 chr13 1424049 1425453 -100447716 - HERVK9 LTR ERVK 0 8032 4582 1855 48 13 0 chr13 1425452 1425680 -100447489 - HERVK9 LTR ERVK -1975 3941 3711 * 14094 56 1 0 chr13 1425680 1427353 -100445816 - HERVK9 LTR ERVK -3130 2786 1113 4393 79 2 7 chr13 1427354 1427925 -100445244 - HERVK9 LTR ERVK -5348 568 1 3883 88 0 6 chr13 1427925 1428439 -100444730 - MER9 LTR ERVK 0 511 1 1429 119 40 36 chr13 1428439 1428690 -100444479 - THE1C LTR MaLR -109 266 15 688 254 69 0 chr13 1428699 1428872 -100444297 + AluJo SINE Alu 98 282 -30 223 159 0 32 chr13 1428915 1428978 -100444191 + (TA)n Simple_repeat Simple_repeat 1 61 0 1773 160 50 0 chr13 1429078 1429359 -100443810 - AluJo SINE Alu -17 295 1 2251 151 81 2 chr13 1429564 1429961 -100443208 + MSTC LTR MaLR 1 428 0 1652 147 4 4 chr13 1429997 1430256 -100442913 + MER2 DNA MER2_type 7 265 -80 1887 202 129 28 chr13 1430418 1430493 -100442676 - REP3 LTR ERV 0 562 496 1780 130 68 17 chr13 1430493 1430786 -100442383 - AluSx SINE Alu -4 308 1 1887 202 129 28 chr13 1430786 1431220 -100441949 - REP3 LTR ERV -66 496 1 607 285 39 81 chr13 1431223 1431364 -100441805 - L1M4 LINE L1 -2678 3468 3323 1763 147 67 7 chr13 1431364 1431649 -100441520 - AluJo SINE Alu -10 302 1 607 285 39 81 chr13 1431649 1431729 -100441440 - L1M4 LINE L1 -2823 3323 3241 2165 115 10 3 chr13 1431729 1432034 -100441135 - AluSx SINE Alu -5 307 1 607 285 39 81 chr13 1432034 1432218 -100440951 - L1M4 LINE L1 -2905 3241 3079 1881 165 3 7 chr13 1432613 1432916 -100440253 - AluJb SINE Alu -10 302 1 361 273 9 0 chr13 1433176 1433286 -100439883 - HAL1 LINE L1 -700 1807 1697 296 197 0 61 chr13 1433291 1433357 -100439812 - MER20 DNA MER1_type -3 216 155 386 326 60 62 chr13 1433357 1433570 -100439599 - L2 LINE L2 -481 2833 2621 1589 189 0 29 chr13 1433570 1433876 -100439293 + AluJo SINE Alu 3 299 -13 2564 63 0 0 chr13 1433882 1434184 -100438985 - AluY SINE Alu -9 302 1 386 326 60 62 chr13 1434184 1434450 -100438719 - L2 LINE L2 -698 2616 2348 2311 106 0 3 chr13 1434450 1434753 -100438416 + AluSx SINE Alu 1 302 -10 427 253 71 22 chr13 1434794 1434976 -100438193 + L1MB2 LINE L1 -723 4294966763 -6839 1453 167 38 88 chr13 1435019 1435384 -100437785 - MER31B LTR ERV1 -119 347 1 2093 239 65 32 chr13 1435744 1436344 -100436825 + L1MB2 LINE L1 801 1638 -4675 2210 144 33 22 chr13 1436344 1436704 -100436465 - THE1B LTR MaLR 0 364 1 2093 239 65 32 chr13 1436704 1436870 -100436299 + L1MB2 LINE L1 1638 1797 -4516 43874 51 6 5 chr13 1436870 1443214 -100429955 + L1PA5 LINE L1 2 6291 0 4126 199 19 59 chr13 1443205 1443219 -100429950 + L1MB2 LINE L1 4638 4651 -1756 * 1851 126 25 14 chr13 1443219 1443535 -100429634 + AluSx SINE Alu 1 319 0 4126 199 19 59 chr13 1443535 1444118 -100429051 + L1MB2 LINE L1 4651 5256 -1151 2065 97 0 91 chr13 1444118 1444438 -100428731 + AluSx SINE Alu 1 291 -21 4126 199 19 59 chr13 1444438 1444469 -100428700 + L1MB2 LINE L1 5256 5287 -1120 2238 102 3 0 chr13 1444469 1444762 -100428407 + AluSp SINE Alu 1 294 -19 4126 199 19 59 chr13 1444762 1445436 -100427733 + L1MB2 LINE L1 5287 5987 -420 2101 103 24 14 chr13 1445436 1445746 -100427423 + AluSx SINE Alu 1 312 0 4126 199 19 59 chr13 1445746 1446111 -100427058 + L1MB2 LINE L1 5987 6204 -203 2254 88 14 0 chr13 1446111 1446405 -100426764 - AluSx SINE Alu -6 306 9 4126 199 19 59 chr13 1446405 1446602 -100426567 + L1MB2 LINE L1 6204 6407 0 329 278 121 31 chr13 1446648 1446871 -100426298 - L2 LINE L2 -1040 2274 2032 408 236 56 23 chr13 1447030 1447246 -100425923 + L1ME3A LINE L1 5845 6122 -48 1690 172 19 19 chr13 1447270 1447578 -100425591 + AluJo SINE Alu 3 310 -2 791 149 0 30 chr13 1447626 1447760 -100425409 + AluJo SINE Alu 4 133 -169 540 246 105 37 chr13 1448187 1448542 -100424627 - MLT1J LTR MaLR -30 481 58 1793 167 0 14 chr13 1448725 1449019 -100424150 - AluSx SINE Alu -22 290 1 1014 171 11 27 chr13 1449645 1449832 -100423337 + AluJo SINE Alu 120 303 -9 333 230 23 0 chr13 1449837 1449924 -100423245 + L1M4 LINE L1 5024 5112 -1034 2331 171 68 16 chr13 1450084 1450568 -100422601 - LTR22 LTR ERVK 0 509 1 278 205 51 39 chr13 1450950 1451028 -100422141 - MIR SINE MIR -64 144 66 2393 67 3 0 chr13 1451343 1451627 -100421542 + AluSp SINE Alu 1 285 -28 180 0 0 0 chr13 1451630 1451650 -100421519 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 2384 74 0 0 chr13 1453220 1453505 -100419664 + AluSx SINE Alu 1 285 -27 8519 49 1 0 chr13 1453578 1454543 -100418626 - LTR5 LTR ERVK -3 966 1 210 118 0 0 chr13 1454548 1454582 -100418587 + (T)n Simple_repeat Simple_repeat 1 34 0 2199 104 3 7 chr13 1454589 1454888 -100418281 + AluSq SINE Alu 1 298 -15 2379 98 0 0 chr13 1455237 1455544 -100417625 + AluSx SINE Alu 1 307 -5 865 186 14 0 chr13 1455546 1455691 -100417478 + AluJo/FRAM SINE Alu 140 286 -26 279 104 0 0 chr13 1455691 1455739 -100417430 + (CA)n Simple_repeat Simple_repeat 2 49 0 2277 113 3 3 chr13 1455831 1456141 -100417028 - AluSq SINE Alu -2 311 2 1986 117 0 66 chr13 1456510 1456615 -100416554 + AluJb SINE Alu 1 111 -201 4093 127 21 68 chr13 1456615 1457340 -100415829 - LTR8 LTR ERV1 0 691 1 1986 117 0 66 chr13 1457340 1457568 -100415601 + AluJb SINE Alu 111 312 0 2301 93 0 0 chr13 1457987 1458277 -100414892 - AluSg SINE Alu -18 292 3 1166 130 0 0 chr13 1458800 1458962 -100414207 + AluSg/x SINE Alu 137 298 -14 1856 122 7 19 chr13 1459429 1459700 -100413469 + AluSx SINE Alu 40 307 -5 5786 21 0 1 chr13 1459700 1460349 -100412820 + L1PA2 LINE L1 5507 6154 -1 1966 139 16 0 chr13 1460500 1460823 -100412346 - L1MA5 LINE L1 0 6300 5973 186 240 0 0 chr13 1460995 1461045 -100412124 + G-rich Low_complexity Low_complexity 3 52 0 21 36 0 0 chr13 1461074 1461102 -100412067 + AT_rich Low_complexity Low_complexity 1 28 0 1704 164 7 45 chr13 1461313 1461623 -100411546 - AluJo SINE Alu -14 298 1 955 227 91 43 chr13 1461646 1461970 -100411199 - MLT1L LTR MaLR -91 524 136 1356 251 40 6 chr13 1461970 1462297 -100410872 - MER58B DNA MER1_type -3 338 1 955 227 91 43 chr13 1462297 1462398 -100410771 - MLT1L LTR MaLR -479 136 41 265 326 80 64 chr13 1462617 1462804 -100410365 - L2 LINE L2 -12 3260 3071 645 284 125 50 chr13 1462972 1463475 -100409694 - LTR67 LTR ERVL -15 542 2 271 264 97 28 chr13 1463487 1463631 -100409538 - L2 LINE L2 -304 2968 2815 21 0 0 0 chr13 1463674 1463695 -100409474 + AT_rich Low_complexity Low_complexity 1 21 0 1736 154 26 4 chr13 1463715 1463987 -100409182 - AluJo SINE Alu -33 279 2 1651 173 0 67 chr13 1464640 1464970 -100408199 - AluJo SINE Alu -4 308 1 415 222 80 91 chr13 1465552 1465616 -100407553 + MIR SINE MIR 86 149 -113 2193 107 3 29 chr13 1465616 1465924 -100407245 + AluSg SINE Alu 1 300 -10 415 222 80 91 chr13 1465924 1466035 -100407134 + MIR SINE MIR 149 259 -3 590 105 0 12 chr13 1466173 1466259 -100406910 - FLAM_A SINE Alu -14 128 44 572 250 0 20 chr13 1466286 1466438 -100406731 - L2 LINE L2 -1 3312 3164 326 281 70 18 chr13 1466450 1466564 -100406605 + L2 LINE L2 3152 3271 -1 1411 179 8 23 chr13 1468118 1468380 -100404789 - AluJb SINE Alu -23 289 32 396 0 0 0 chr13 1468436 1468480 -100404689 + (CA)n Simple_repeat Simple_repeat 2 45 0 2146 143 0 0 chr13 1469140 1469447 -100403722 - AluSx SINE Alu -5 307 1 826 214 21 16 chr13 1469507 1469699 -100403470 - MIR SINE MIR -10 252 60 1899 91 47 14 chr13 1469992 1470294 -100402875 + AluY SINE Alu 1 311 0 1271 119 0 0 chr13 1470294 1470470 -100402699 + AluSg/x SINE Alu 125 300 -10 7461 118 19 16 chr13 1470631 1472698 -100400471 + L1MA1 LINE L1 4234 6302 0 955 228 122 108 chr13 1472760 1473295 -100399874 + MLT1H1 LTR MaLR 1 555 0 1700 132 19 16 chr13 1473768 1474025 -100399144 - AluJb SINE Alu -54 258 1 1351 215 21 30 chr13 1474036 1474366 -100398803 - L1ME1 LINE L1 -5 6161 5835 322 298 119 18 chr13 1474466 1474634 -100398535 + MER5A DNA MER1_type 1 185 -4 391 214 31 31 chr13 1474662 1474760 -100398409 + MIR SINE MIR 40 137 -125 486 278 38 48 chr13 1474771 1474980 -100398189 - L2 LINE L2 -1 3312 3106 625 154 34 26 chr13 1475263 1475380 -100397789 - MLT1J LTR MaLR -326 185 68 7915 35 6 3 chr13 1475749 1477180 -100395989 - L1PA4 LINE L1 -3 6152 4720 12548 31 1 0 chr13 1477180 1478654 -100394515 + L1PA4 LINE L1 3274 4749 -1397 2100 117 21 0 chr13 1478888 1479178 -100393991 + AluSx SINE Alu 1 296 -16 1695 162 179 17 chr13 1479231 1479650 -100393519 + LTR54B LTR ERV1 8 494 -4 2228 97 0 3 chr13 1480034 1480332 -100392837 - AluSx SINE Alu -15 297 1 2010 95 0 70 chr13 1480346 1480662 -100392507 - AluSx SINE Alu -18 294 1 2244 79 0 0 chr13 1480759 1481059 -100392110 - AluY SINE Alu 0 300 1 1242 219 150 27 chr13 1481255 1481621 -100391548 - MLT1G3 LTR MaLR -10 520 110 620 229 15 0 chr13 1481611 1481742 -100391427 - MER119 DNA MER1_type -277 306 174 * 787 183 100 19 chr13 1481752 1481993 -100391176 - MER2 DNA MER2_type 0 345 24 233 205 0 0 chr13 1482100 1482139 -100391030 - MER119 DNA MER1_type -538 45 7 * 993 291 160 11 chr13 1482128 1482565 -100390604 - MLT1G1 LTR MaLR -89 506 5 2190 96 0 32 chr13 1482723 1483036 -100390133 - AluY SINE Alu -8 303 1 370 279 39 8 chr13 1483052 1483181 -100389988 - L1MC5 LINE L1 -48 7913 7781 602 219 150 43 chr13 1483202 1483435 -100389734 - L1ME2 LINE L1 0 6164 5907 1086 153 34 0 chr13 1483437 1483614 -100389555 - AluSg/x SINE Alu -8 304 122 520 193 196 2 chr13 1483620 1483774 -100389395 - L1ME2 LINE L1 -273 5893 5712 2163 117 0 17 chr13 1484126 1484426 -100388743 - AluSx SINE Alu -17 295 1 1833 172 3 0 chr13 1485209 1485499 -100387670 + AluJo SINE Alu 1 291 -21 41 36 0 0 chr13 1487116 1487171 -100385998 + AT_rich Low_complexity Low_complexity 1 55 0 274 324 69 6 chr13 1487348 1487521 -100385648 + MIR SINE MIR 40 223 -39 2136 84 0 84 chr13 1487834 1488154 -100385015 - AluSg SINE Alu -17 293 1 2227 111 3 7 chr13 1488184 1488491 -100384678 - AluSq SINE Alu -7 306 1 21 0 0 0 chr13 1488658 1488679 -100384490 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 1488724 1488754 -100384415 + AT_rich Low_complexity Low_complexity 1 30 0 2788 16 0 0 chr13 1489252 1489556 -100383613 + AluY SINE Alu 1 304 -7 2055 100 0 91 chr13 1491575 1491741 -100381428 - AluSq SINE Alu -14 299 176 2244 91 3 7 chr13 1491741 1492050 -100381119 - AluSg1 SINE Alu -1 308 1 2055 100 0 91 chr13 1492050 1492212 -100380957 - AluSq SINE Alu -137 176 1 2331 58 29 23 chr13 1492478 1492811 -100380358 - AluY SINE Alu 0 335 1 25 0 0 0 chr13 1493340 1493365 -100379804 + GC_rich Low_complexity Low_complexity 1 25 0 2256 177 65 0 chr13 1497077 1497461 -100375708 - LTR57 LTR ERVL -2 409 1 215 228 0 35 chr13 1497643 1497700 -100375469 - L2 LINE L2 -93 3220 3166 1245 228 4 0 chr13 1497973 1498219 -100374950 + AluJo SINE Alu 39 285 -27 2471 84 10 0 chr13 1498648 1498957 -100374212 + AluSq SINE Alu 1 312 -1 238 314 0 35 chr13 1499306 1499392 -100373777 + L2 LINE L2 3231 3313 0 292 286 152 0 chr13 1499571 1499683 -100373486 + MIR SINE MIR 124 252 -10 188 273 0 0 chr13 1499687 1499731 -100373438 + MIR SINE MIR 219 262 0 413 285 63 39 chr13 1500110 1500317 -100372852 + L1ME4a LINE L1 5615 5826 -295 2343 74 0 0 chr13 1500336 1500667 -100372502 - AluY SINE Alu 0 331 1 2428 223 48 29 chr13 1500809 1501428 -100371741 - L1ME1 LINE L1 -5 6161 5531 276 250 125 11 chr13 1501526 1501614 -100371555 + MIR SINE MIR 149 246 -16 23 0 0 0 chr13 1501872 1501895 -100371274 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 1503061 1503085 -100370084 + AT_rich Low_complexity Low_complexity 1 24 0 2099 122 14 0 chr13 1503158 1503453 -100369716 - AluSx SINE Alu -13 299 1 298 261 80 0 chr13 1503597 1503685 -100369484 + MIR SINE MIR 47 141 -121 1013 165 23 6 chr13 1503800 1503976 -100369193 + AluSg/x SINE Alu 133 311 -1 434 208 15 85 chr13 1504061 1504191 -100368978 + MIR SINE MIR 87 207 -55 6128 130 37 26 chr13 1504590 1505628 -100367541 - L1PA15 LINE L1 -4 6161 5112 1977 125 10 10 chr13 1505628 1505924 -100367245 - AluSq SINE Alu -17 296 1 6128 130 37 26 chr13 1505924 1506112 -100367057 - L1PA15 LINE L1 -1053 5112 4928 28 29 0 0 chr13 1506780 1506815 -100366354 + AT_rich Low_complexity Low_complexity 1 35 0 533 278 211 30 chr13 1506989 1507015 -100366154 - L1MC4a LINE L1 -1897 5911 5891 219 114 0 0 chr13 1507015 1507050 -100366119 + (TA)n Simple_repeat Simple_repeat 1 35 0 533 278 211 30 chr13 1507050 1507393 -100365776 - L1MC4a LINE L1 -1917 5891 5475 872 154 7 7 chr13 1507442 1507585 -100365584 - AluJo SINE Alu -169 143 1 471 230 40 43 chr13 1507628 1507966 -100365203 - HAL1 LINE L1 -1011 1496 1059 2376 112 0 0 chr13 1507971 1508283 -100364886 + AluSq SINE Alu 1 312 -1 335 114 0 0 chr13 1508354 1508398 -100364771 - Alu SINE Alu -257 44 1 367 310 33 26 chr13 1508422 1508542 -100364627 - MLT1J1 LTR MaLR -284 188 78 1580 161 3 71 chr13 1508542 1508865 -100364304 - AluJo SINE Alu -11 301 1 367 310 33 26 chr13 1508865 1508942 -100364227 - MLT1J1 LTR MaLR -394 78 3 1204 321 110 32 chr13 1508947 1509757 -100363412 - HAL1 LINE L1 -1618 889 17 462 65 0 0 chr13 1509781 1509843 -100363326 + (TG)n Simple_repeat Simple_repeat 2 63 0 1505 211 3 23 chr13 1509848 1510147 -100363022 - AluJo SINE Alu -19 293 1 183 42 0 0 chr13 1510335 1510359 -100362810 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 806 214 135 17 chr13 1510414 1510678 -100362491 - L1MDa LINE L1 -3890 2650 2434 2063 146 7 0 chr13 1510678 1510980 -100362189 - AluJb SINE Alu -8 304 1 806 214 135 17 chr13 1510980 1511079 -100362090 - L1MDa LINE L1 -4106 2434 2348 1989 114 14 7 chr13 1511105 1511402 -100361767 + AluSq SINE Alu 1 299 -14 2126 117 19 10 chr13 1511408 1511715 -100361454 + AluSx SINE Alu 1 310 -2 1680 154 57 0 chr13 1511769 1512048 -100361121 - AluJo SINE Alu -17 295 1 350 166 47 24 chr13 1512366 1512451 -100360718 + MLT1E3 LTR MaLR 420 491 -102 828 183 21 0 chr13 1512454 1512596 -100360573 + FRAM SINE Alu 11 155 -21 554 290 100 29 chr13 1512610 1512920 -100360249 + L1ME3A LINE L1 3307 3638 -2508 865 258 34 34 chr13 1513025 1513320 -100359849 + L1ME3A LINE L1 3866 4160 -1986 1272 240 98 54 chr13 1513369 1513869 -100359300 + MLT1E LTR MaLR 70 591 -2 790 214 62 95 chr13 1513973 1514156 -100359013 + L1ME3A LINE L1 4322 4509 -1637 1988 143 0 10 chr13 1514156 1514480 -100358689 + AluSx SINE Alu 1 321 0 790 214 62 95 chr13 1514480 1514596 -100358573 + L1ME3A LINE L1 4509 4627 -1519 2033 146 3 0 chr13 1514596 1514898 -100358271 - AluSq SINE Alu -10 303 1 790 214 62 95 chr13 1514898 1515122 -100358047 + L1ME3A LINE L1 4627 4832 -1314 1749 109 121 6 chr13 1515160 1515171 -100357998 + MSTC LTR MaLR 1 9 -419 2627 98 17 3 chr13 1515171 1515530 -100357639 - THE1B LTR MaLR 0 364 1 1749 109 121 6 chr13 1515530 1515858 -100357311 + MSTC LTR MaLR 9 379 -49 2173 104 44 3 chr13 1515944 1516241 -100356928 + AluSx SINE Alu 1 309 -3 2391 71 0 0 chr13 1516241 1516538 -100356631 + AluY SINE Alu 1 297 -14 381 248 126 9 chr13 1516542 1516756 -100356413 + L1ME3A LINE L1 5041 5279 -867 2232 120 0 7 chr13 1516856 1517165 -100356004 + AluSx SINE Alu 1 307 -5 261 0 0 0 chr13 1517176 1517205 -100355964 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2346 90 3 3 chr13 1517227 1517527 -100355642 + AluSq SINE Alu 1 300 -13 457 230 171 21 chr13 1517528 1517767 -100355402 + L1P5 LINE L1 5292 5566 -590 306 243 37 7 chr13 1517777 1517913 -100355256 + (TA)n Simple_repeat Simple_repeat 1 140 0 504 275 26 0 chr13 1518030 1518219 -100354950 + L1ME3A LINE L1 5746 5939 -231 248 200 27 45 chr13 1518390 1518500 -100354669 + (TTATA)n Simple_repeat Simple_repeat 3 110 0 2071 119 3 14 chr13 1518825 1519149 -100354020 + AluSx SINE Alu 1 321 0 2107 124 3 3 chr13 1519529 1519836 -100353333 - AluSx SINE Alu -4 308 2 1779 157 67 6 chr13 1520391 1520736 -100352433 + MER47A DNA MER2_type 1 366 0 232 207 264 43 chr13 1520993 1521133 -100352036 + MIR SINE MIR 31 201 -61 298 250 42 0 chr13 1521702 1521774 -100351395 - L2 LINE L2 0 3272 3198 264 274 14 103 chr13 1521884 1522030 -100351139 + L2 LINE L2 3180 3312 -1 1130 149 78 136 chr13 1522131 1522528 -100350641 - MLT1A2 LTR MaLR 0 374 1 2330 104 0 0 chr13 1522815 1523113 -100350056 - AluSx SINE Alu -14 298 1 2484 140 33 13 chr13 1523468 1523926 -100349243 + L1MB4 LINE L1 5714 6180 0 1757 137 74 0 chr13 1523933 1524204 -100348965 + AluJo SINE Alu 1 291 -21 892 111 0 0 chr13 1525331 1525448 -100347721 + AluSq/x SINE Alu 1 117 -196 2100 116 7 7 chr13 1525626 1525920 -100347249 - AluSx SINE Alu -18 294 1 1720 140 74 0 chr13 1526809 1527080 -100346089 - AluJo SINE Alu -21 291 1 1249 155 52 16 chr13 1527087 1527339 -100345830 - L1MB4 LINE L1 0 6180 5920 26 30 0 0 chr13 1528508 1528541 -100344628 + AT_rich Low_complexity Low_complexity 1 33 0 4497 213 43 13 chr13 1528687 1530478 -100342691 + L1M2 LINE L1 1617 3457 -3391 318 26 0 0 chr13 1531872 1531911 -100341258 + (CA)n Simple_repeat Simple_repeat 1 39 0 2228 119 0 0 chr13 1533628 1533922 -100339247 + AluSg SINE Alu 1 294 -16 643 229 68 71 chr13 1534424 1534747 -100338422 - L1MC4 LINE L1 -678 7364 7043 504 283 82 80 chr13 1535090 1535628 -100337541 - L1MEd LINE L1 -4900 1219 681 365 167 12 48 chr13 1535692 1535776 -100337393 - MER94 DNA DNA -48 86 6 422 226 13 69 chr13 1535906 1536065 -100337104 - MER57A LTR ERV1 -4 399 250 2587 198 41 68 chr13 1536189 1536569 -100336600 + L1M2 LINE L1 3374 3763 -3085 2128 79 7 7 chr13 1536569 1536844 -100336325 + L1PA5 LINE L1 5860 6150 -4 2587 198 41 68 chr13 1536844 1537366 -100335803 + L1M2 LINE L1 3763 4252 -2596 2170 158 10 5 chr13 1537372 1537759 -100335410 + Tigger1 DNA MER2_type 2029 2417 -1 199 167 30 0 chr13 1537764 1537830 -100335339 + (TA)n Simple_repeat Simple_repeat 1 68 0 1041 159 36 36 chr13 1538639 1538834 -100334335 - AluJb SINE Alu -117 195 1 380 193 202 0 chr13 1538834 1538948 -100334221 - L1MB4 LINE L1 -269 5909 5773 1907 104 57 13 chr13 1538959 1539275 -100333894 - L1MA4A LINE L1 0 6303 5974 986 94 8 0 chr13 1539276 1539403 -100333766 - AluSq/x SINE Alu -185 128 1 5459 102 28 15 chr13 1539696 1541195 -100331974 - L1PA15 LINE L1 -8 6157 4675 308 309 115 36 chr13 1541196 1541448 -100331721 + L2 LINE L2 2487 2758 -556 310 400 24 28 chr13 1541491 1541746 -100331423 + L2 LINE L2 2839 3092 -180 563 315 90 21 chr13 1541755 1542133 -100331036 - L1MEd LINE L1 -5262 1372 969 407 187 58 79 chr13 1542349 1542488 -100330681 - L1MEd LINE L1 -5924 618 483 2280 108 16 0 chr13 1542656 1542962 -100330207 + AluSx SINE Alu 1 311 -1 1499 261 72 19 chr13 1542974 1543491 -100329678 + L1M4 LINE L1 2 545 -5997 2354 105 0 13 chr13 1543501 1543816 -100329353 + AluY SINE Alu 1 311 0 2220 197 21 0 chr13 1543853 1544289 -100328880 - MER44D DNA MER2_type -61 544 228 679 221 11 103 chr13 1544292 1544554 -100328615 + L1M4 LINE L1 1866 2103 -4543 418 283 18 27 chr13 1544585 1544804 -100328365 + L1M4 LINE L1 2287 2503 -4143 801 287 89 43 chr13 1544832 1545438 -100327731 + L1M4 LINE L1 2616 3249 -3395 3045 193 34 5 chr13 1545557 1546344 -100326825 + L1M4 LINE L1 2462 3271 -2875 1513 222 90 28 chr13 1546426 1546568 -100326601 + L1M4 LINE L1 4009 4141 -2005 180 0 0 0 chr13 1546568 1546588 -100326581 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1513 222 90 28 chr13 1546588 1546989 -100326180 + L1M4 LINE L1 4141 4586 -1560 7182 170 56 43 chr13 1547097 1547812 -100325357 - ERVL LTR ERVL -1512 4252 3547 2064 132 0 20 chr13 1547812 1548116 -100325053 - AluSx SINE Alu -14 298 1 7182 170 56 43 chr13 1548116 1548920 -100324249 - ERVL LTR ERVL -2217 3547 2714 2000 157 0 3 chr13 1548925 1549237 -100323932 + AluJb SINE Alu 1 311 -1 198 0 0 0 chr13 1549245 1549267 -100323902 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr13 1549444 1549466 -100323703 + (A)n Simple_repeat Simple_repeat 1 22 0 6008 188 47 21 chr13 1549476 1550401 -100322768 - ERVL LTR ERVL -3042 2722 1754 2146 124 0 35 chr13 1550401 1550715 -100322454 + AluSx SINE Alu 1 303 -9 6008 188 47 21 chr13 1550715 1551063 -100322106 - ERVL LTR ERVL -4010 1754 1416 536 129 50 0 chr13 1551138 1551239 -100321930 + AluSg/x SINE Alu 203 308 -2 1454 206 4 0 chr13 1551240 1551521 -100321648 - ERVL LTR ERVL -4401 1363 1082 310 130 0 0 chr13 1551521 1551567 -100321602 - Alu SINE Alu -8 292 247 358 206 152 0 chr13 1551667 1551759 -100321410 - ERVL LTR ERVL -4746 1018 913 2169 127 0 3 chr13 1551789 1552097 -100321072 + AluSq SINE Alu 1 307 -6 1155 198 48 17 chr13 1552554 1552847 -100320322 + Charlie1b DNA MER1_type 6 307 -216 231 258 21 21 chr13 1552956 1553053 -100320116 + L1MC4a LINE L1 7244 7340 -468 488 181 181 0 chr13 1553083 1553188 -100319981 - FLAM_A SINE Alu -9 124 1 1955 142 0 0 chr13 1553215 1553516 -100319653 - AluSx SINE Alu 0 301 1 2284 94 0 7 chr13 1553737 1554024 -100319145 - AluSx SINE Alu -7 305 21 874 195 40 0 chr13 1554030 1554204 -100318965 - L1MC1 LINE L1 -8 6325 6145 311 279 65 35 chr13 1554217 1554418 -100318751 - MER20B DNA MER1_type -62 721 515 817 169 0 22 chr13 1554498 1554634 -100318535 + AluJo SINE Alu 3 135 -177 1306 169 56 91 chr13 1554663 1554983 -100318186 + AluJo SINE Alu 1 309 -3 556 152 4 0 chr13 1555002 1555109 -100318060 + L1M4c LINE L1 2322 2431 -3951 337 226 0 14 chr13 1555131 1555237 -100317932 - L1MCa LINE L1 -1339 6983 2006 2120 104 10 3 chr13 1555238 1555527 -100317642 - AluSq SINE Alu -22 291 1 767 130 26 0 chr13 1555548 1555663 -100317506 - FLAM_C SINE Alu -25 118 1 1844 188 12 22 chr13 1555664 1556069 -100317100 - MER74A LTR ERVL -13 545 145 377 218 16 89 chr13 1556175 1556299 -100316870 - MER74A LTR ERVL -423 135 21 2221 118 0 3 chr13 1556302 1556608 -100316561 + AluSx SINE Alu 1 305 -7 1165 163 105 1 chr13 1556608 1556873 -100316296 + L1MB3 LINE L1 5659 5947 -204 23 0 0 0 chr13 1557025 1557048 -100316121 + AT_rich Low_complexity Low_complexity 1 23 0 2295 82 0 3 chr13 1557048 1557340 -100315829 - AluSq SINE Alu -22 291 1 22 0 0 0 chr13 1557726 1557748 -100315421 + AT_rich Low_complexity Low_complexity 1 22 0 1606 142 85 21 chr13 1557748 1558029 -100315140 - AluJb SINE Alu -13 299 1 278 47 0 0 chr13 1558038 1558081 -100315088 - L1MB3 LINE L1 -2 6181 6139 1107 69 0 0 chr13 1558125 1558256 -100314913 - AluSg SINE Alu -179 131 1 1673 171 13 38 chr13 1558259 1558430 -100314739 - AluJo SINE Alu -4 308 147 2200 126 3 0 chr13 1558430 1558739 -100314430 - AluSq SINE Alu -3 310 1 1673 171 13 38 chr13 1558739 1558883 -100314286 - AluJo SINE Alu -165 147 1 1455 167 9 65 chr13 1558884 1558977 -100314192 - L1MB2 LINE L1 -2 6169 6072 2420 77 3 0 chr13 1558977 1559277 -100313892 - AluSp SINE Alu -11 302 2 1455 167 9 65 chr13 1559277 1559524 -100313645 - L1MB2 LINE L1 -99 6072 5848 1396 203 16 4 chr13 1559536 1559792 -100313377 + AluJo SINE Alu 14 272 -40 2092 76 69 0 chr13 1559838 1560115 -100313054 + AluSg1 SINE Alu 1 296 -13 1231 163 34 0 chr13 1560131 1560364 -100312805 - L1MB2 LINE L1 -329 5854 5614 572 143 50 2 chr13 1560364 1560496 -100312673 + MLT1A2 LTR MaLR 1 151 -214 264 200 33 0 chr13 1560612 1560672 -100312497 - L1MB2 LINE L1 -999 5147 5086 1258 65 7 0 chr13 1560674 1560827 -100312342 - AluY SINE Alu -123 188 35 180 0 0 0 chr13 1560881 1560901 -100312268 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1229 225 51 24 chr13 1560927 1561301 -100311868 - L1MB2 LINE L1 -2405 3741 3358 1943 110 10 30 chr13 1561301 1561600 -100311569 - AluSx SINE Alu -19 293 1 847 187 110 38 chr13 1561705 1561914 -100311255 - MLT2B1 LTR ERVL 0 520 297 197 278 200 0 chr13 1562332 1562422 -100310747 + MIR SINE MIR 150 257 -5 1866 113 64 18 chr13 1562423 1562705 -100310464 - AluSx SINE Alu -17 295 1 422 250 180 8 chr13 1562996 1563124 -100310045 - MER5A DNA MER1_type -6 183 34 593 135 0 11 chr13 1563188 1563277 -100309892 + AluJ/FLAM SINE Alu 4 91 -221 870 145 132 7 chr13 1563278 1563430 -100309739 + AluJb SINE Alu 1 171 -141 1914 161 0 0 chr13 1563430 1563703 -100309466 - AluJo SINE Alu -39 273 1 2287 80 3 3 chr13 1563705 1564004 -100309165 - AluSx SINE Alu -12 300 2 339 82 260 14 chr13 1564026 1564099 -100309070 - HY1 scRNA scRNA -11 101 11 1891 131 35 7 chr13 1564120 1564410 -100308759 - AluJb SINE Alu -14 298 1 1801 128 115 10 chr13 1564472 1564777 -100308392 - MER1B DNA MER1_type 0 337 1 1924 132 7 23 chr13 1565035 1565206 -100307963 - AluSx SINE Alu -7 305 140 1998 121 16 3 chr13 1565206 1565513 -100307656 - AluSq SINE Alu 0 313 3 1924 132 7 23 chr13 1565513 1565651 -100307518 - AluSx SINE Alu -172 140 1 1025 136 7 0 chr13 1566119 1566274 -100306895 - AluSc SINE Alu -18 291 136 425 91 0 0 chr13 1566274 1566329 -100306840 + AluSp/q SINE Alu 235 289 -24 569 152 0 10 chr13 1566452 1566551 -100306618 - AluS SINE Alu -214 99 2 1391 205 32 63 chr13 1566592 1566706 -100306463 + L1MB3 LINE L1 4135 4251 -1895 2161 105 7 0 chr13 1566706 1567012 -100306157 + AluSg SINE Alu 1 308 -2 1391 205 32 63 chr13 1567012 1567165 -100306004 + L1MB3 LINE L1 4251 4385 -1761 2036 108 7 3 chr13 1567165 1567462 -100305707 + AluSx SINE Alu 1 298 -14 1391 205 32 63 chr13 1567462 1567636 -100305533 + L1MB3 LINE L1 4385 4563 -1583 2460 204 12 39 chr13 1567637 1568148 -100305021 - MLT2B2 LTR ERVL -18 497 1 4721 169 28 100 chr13 1568148 1568456 -100304713 + L1MB3 LINE L1 4552 4881 -1302 712 194 0 50 chr13 1568456 1568595 -100304574 - AluJo SINE Alu -176 136 5 4721 169 28 100 chr13 1568595 1569080 -100304089 + L1MB3 LINE L1 4881 5400 -783 2156 98 30 0 chr13 1569080 1569375 -100303794 + AluSq SINE Alu 1 304 -9 4721 169 28 100 chr13 1569375 1569540 -100303629 + L1MB3 LINE L1 5400 5575 -608 2190 108 0 0 chr13 1569540 1569836 -100303333 + AluSx SINE Alu 1 296 -16 4721 169 28 100 chr13 1569836 1570270 -100302899 + L1MB3 LINE L1 5575 5924 -259 1640 180 35 96 chr13 1570270 1570657 -100302512 + MSTB1 LTR MaLR 1 357 -75 2287 45 48 0 chr13 1570657 1570948 -100302221 - AluY SINE Alu -6 305 1 1640 180 35 96 chr13 1570948 1571020 -100302149 + MSTB1 LTR MaLR 357 432 0 4721 169 28 100 chr13 1571020 1571256 -100301913 + L1MB3 LINE L1 5924 6176 -7 2012 119 3 3 chr13 1571270 1571564 -100301605 + AluSx SINE Alu 1 294 -18 1067 89 0 7 chr13 1571565 1571711 -100301458 + AluSq/x SINE Alu 1 145 -167 1246 109 18 68 chr13 1571813 1571968 -100301201 - L1PA16 LINE L1 -189 5977 5835 2261 89 0 0 chr13 1571968 1572271 -100300898 - AluSc SINE Alu -5 304 2 1246 109 18 68 chr13 1572271 1572335 -100300834 - L1PA16 LINE L1 -331 5835 5769 602 175 0 0 chr13 1572336 1572433 -100300736 - U13 snRNA snRNA -7 97 1 2263 140 79 0 chr13 1572434 1572812 -100300357 - L1PA16 LINE L1 -385 5781 5374 675 252 41 49 chr13 1572841 1573087 -100300082 + MLT1D LTR MaLR 1 244 -261 1658 166 43 7 chr13 1573087 1573208 -100299961 + AluJo SINE Alu 1 116 -196 192 40 0 0 chr13 1573208 1573233 -100299936 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1658 166 43 7 chr13 1573233 1573412 -100299757 + AluJo SINE Alu 116 312 0 359 199 82 110 chr13 1573542 1573688 -100299481 - MIR3 SINE MIR -22 186 45 186 167 0 125 chr13 1573690 1573738 -100299431 - MIR SINE MIR -1 261 220 190 289 0 0 chr13 1573851 1573903 -100299266 - MER5A DNA MER1_type -2 187 136 2191 89 0 0 chr13 1573913 1574239 -100298930 + AluSg SINE Alu 1 326 0 1123 248 111 46 chr13 1574254 1574598 -100298571 + L1MC4 LINE L1 7538 7921 -121 1788 154 7 10 chr13 1574598 1574903 -100298266 - AluSx SINE Alu -8 304 1 1123 248 111 46 chr13 1574903 1575018 -100298151 + L1MC4 LINE L1 7921 8027 -15 2059 123 3 0 chr13 1575051 1575351 -100297818 - AluSx SINE Alu -11 301 1 1190 194 8 28 chr13 1575400 1575647 -100297522 + AluJb SINE Alu 58 299 -13 318 326 91 23 chr13 1575694 1575869 -100297300 - L1M4 LINE L1 -3271 2875 2689 705 159 153 32 chr13 1576058 1576215 -100296954 + FRAM SINE Alu 1 40 0 366 305 73 13 chr13 1576231 1576382 -100296787 - L1M4 LINE L1 -3716 2430 2271 524 244 37 0 chr13 1576556 1576691 -100296478 + MLT1F1 LTR MaLR 1 140 -427 2066 97 0 67 chr13 1576693 1577023 -100296146 + AluSx SINE Alu 1 308 -4 397 170 0 20 chr13 1577023 1577123 -100296046 + GA-rich Low_complexity Low_complexity 1 98 0 244 123 0 53 chr13 1577290 1577347 -100295822 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 1619 166 63 0 chr13 1577363 1577647 -100295522 + AluJo SINE Alu 1 302 -10 1344 198 32 8 chr13 1577667 1577920 -100295249 + MLT1F1 LTR MaLR 298 556 -11 1785 141 13 19 chr13 1577982 1578295 -100294874 - AluJb SINE Alu -1 311 1 21 0 0 0 chr13 1578651 1578672 -100294497 + AT_rich Low_complexity Low_complexity 1 21 0 2017 116 0 0 chr13 1578750 1579056 -100294113 + AluSx SINE Alu 1 306 0 842 249 39 55 chr13 1579143 1579558 -100293611 + L1MC5 LINE L1 6571 6919 -889 1582 181 37 10 chr13 1579576 1579875 -100293294 - MER65C LTR ERV1 0 461 155 2198 105 0 0 chr13 1579875 1580171 -100292998 + AluSx SINE Alu 1 296 -16 2265 68 17 0 chr13 1580434 1580728 -100292441 - AluSp SINE Alu -14 299 1 1522 167 17 17 chr13 1580845 1581138 -100292031 + AluJb SINE Alu 13 305 -7 1921 79 64 4 chr13 1581698 1581993 -100291176 + AluSq SINE Alu 1 311 0 1745 148 7 0 chr13 1582403 1582717 -100290452 + AluSq SINE Alu 1 316 0 1695 176 3 3 chr13 1582812 1583113 -100290056 + AluJb SINE Alu 1 301 -11 1734 153 10 3 chr13 1583122 1583417 -100289752 + AluJb SINE Alu 1 297 -15 378 176 47 0 chr13 1583644 1583729 -100289440 - Charlie1a DNA MER1_type -459 996 908 1847 143 7 3 chr13 1583731 1584017 -100289152 + AluSx SINE Alu 3 289 -23 892 201 0 0 chr13 1584031 1584205 -100288964 - FRAM SINE Alu -10 166 1 1547 208 139 47 chr13 1584250 1584847 -100288322 - Charlie1a DNA MER1_type -550 905 254 1215 259 110 77 chr13 1584842 1585503 -100287666 + MER21B LTR ERV1 27 709 -154 * 408 234 341 0 chr13 1585534 1585701 -100287468 - Charlie1a DNA MER1_type -1177 278 55 394 313 145 39 chr13 1585856 1586055 -100287114 - L1ME LINE L1 -375 5746 5569 2007 113 3 3 chr13 1586055 1586347 -100286822 + AluSq SINE Alu 1 292 -21 394 313 145 39 chr13 1586347 1586479 -100286690 - L1ME LINE L1 -552 5569 5380 189 0 0 0 chr13 1586735 1586756 -100286413 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1976 100 3 47 chr13 1586773 1587092 -100286077 + AluSg SINE Alu 3 307 -3 1415 191 3 28 chr13 1587095 1587378 -100285791 - AluJo SINE Alu -36 276 1 1539 243 35 35 chr13 1587378 1587489 -100285680 - L1M4 LINE L1 -3167 3215 3105 2426 54 0 3 chr13 1587489 1587784 -100285385 + AluY SINE Alu 1 294 -17 1539 243 35 35 chr13 1587784 1588245 -100284924 - L1M4 LINE L1 -3276 3106 2643 414 193 58 72 chr13 1588254 1588461 -100284708 - L1M4 LINE L1 -3695 2687 2484 754 179 32 105 chr13 1588575 1588854 -100284315 - L1M4 LINE L1 -3861 2521 2260 350 241 0 0 chr13 1588853 1588932 -100284237 - L1MB2 LINE L1 -163 6008 5930 * 2095 88 7 0 chr13 1588932 1589215 -100283954 - AluSx SINE Alu -15 297 13 2287 77 3 16 chr13 1589232 1589544 -100283625 - AluY SINE Alu -3 308 1 771 90 0 0 chr13 1590207 1590307 -100282862 - AluSp/q SINE Alu -19 294 195 498 290 209 18 chr13 1590344 1590679 -100282490 - HAL1 LINE L1 -2003 504 106 1833 130 3 7 chr13 1590742 1591027 -100282142 - AluJb SINE Alu -7 305 22 1692 161 7 3 chr13 1591127 1591304 -100281865 - AluJo SINE Alu -2 310 135 182 61 0 30 chr13 1591304 1591337 -100281832 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1601 156 18 14 chr13 1591337 1591619 -100281550 - AluJo SINE Alu -29 283 1 1692 161 7 3 chr13 1591619 1591745 -100281424 - AluJo SINE Alu -176 136 5 2495 48 0 0 chr13 1592217 1592526 -100280643 - AluY SINE Alu -2 309 1 970 165 0 12 chr13 1592526 1592682 -100280487 - AluSg/x SINE Alu -15 295 140 2115 107 3 0 chr13 1592691 1592982 -100280187 - AluSp SINE Alu -11 302 11 297 285 146 18 chr13 1592991 1593156 -100280013 - MIR SINE MIR -1 261 76 2251 75 0 22 chr13 1593303 1593621 -100279548 - AluY SINE Alu 0 311 1 1844 80 109 4 chr13 1593632 1593906 -100279263 - AluSg SINE Alu -7 303 1 2241 91 3 0 chr13 1594462 1594759 -100278410 - AluY SINE Alu -13 298 1 504 216 78 44 chr13 1595296 1595322 -100277847 + L1 LINE L1 3155 3179 -2967 2214 103 0 3 chr13 1595322 1595633 -100277536 + AluSx SINE Alu 1 310 -2 504 216 78 44 chr13 1595633 1595811 -100277358 + L1 LINE L1 3179 3366 -2780 2010 112 7 13 chr13 1595812 1596117 -100277052 + AluSg SINE Alu 1 303 -7 2188 76 0 14 chr13 1596250 1596572 -100276597 + AluY SINE Alu 1 318 0 562 130 0 0 chr13 1596584 1596661 -100276508 + AluJ/FLAM SINE Alu 3 79 -233 1175 145 0 0 chr13 1597120 1597299 -100275870 - AluSg/x SINE Alu -1 309 131 2529 55 0 0 chr13 1597299 1597610 -100275559 - AluY SINE Alu 0 311 1 1713 175 0 9 chr13 1597821 1598136 -100275033 + AluJb SINE Alu 1 312 0 2122 114 7 0 chr13 1598178 1598476 -100274693 + AluSq SINE Alu 1 300 -13 502 278 40 30 chr13 1598510 1598754 -100274415 + L2 LINE L2 1988 2303 -1011 2024 113 7 3 chr13 1598825 1599116 -100274053 + AluSx SINE Alu 1 292 -20 959 99 106 7 chr13 1599122 1599273 -100273896 + MER51B LTR ERV1 212 377 0 266 86 0 0 chr13 1599273 1599308 -100273861 + MER51B-int LTR ERV1 1 35 -7781 * 463 127 0 0 chr13 1599300 1599371 -100273798 + MER51-int LTR ERV1 3130 3200 -4616 2016 101 21 3 chr13 1599379 1599665 -100273504 - AluSg SINE Alu -19 291 1 291 93 0 0 chr13 1599667 1599710 -100273459 + MER51-int LTR ERV1 6086 6128 -1688 1371 117 5 5 chr13 1599719 1599933 -100273236 + AluY SINE Alu 2 215 -96 2174 180 99 61 chr13 1600044 1600074 -100273095 - LTR12 LTR ERV1 -199 515 488 1278 172 20 24 chr13 1600074 1600371 -100272798 + AluY SINE Alu 1 296 -15 2174 180 99 61 chr13 1600371 1600922 -100272247 - LTR12 LTR ERV1 -226 488 1 844 187 0 26 chr13 1600922 1601077 -100272092 + AluJb SINE Alu 150 300 -12 1882 118 7 29 chr13 1601339 1601645 -100271524 + AluSq SINE Alu 1 299 -14 377 229 0 95 chr13 1601645 1601744 -100271425 + L1MC4 LINE L1 6615 6703 -1339 194 170 0 21 chr13 1601747 1601794 -100271375 + (TA)n Simple_repeat Simple_repeat 1 46 0 602 234 54 36 chr13 1601882 1601934 -100271235 - MER45A DNA AcHobo -1411 170 120 2333 84 7 0 chr13 1601934 1602244 -100270925 - AluSp SINE Alu 0 313 2 602 234 54 36 chr13 1602244 1602358 -100270811 - MER45A DNA AcHobo -1461 120 1 1742 149 0 40 chr13 1602421 1602744 -100270425 - AluSx SINE Alu -2 310 1 881 210 46 50 chr13 1602744 1603025 -100270144 - L1MC5 LINE L1 -528 7433 7154 1596 90 9 0 chr13 1603029 1603251 -100269918 + AluSq SINE Alu 1 224 -89 1054 148 6 0 chr13 1603357 1603526 -100269643 - AluSg/x SINE Alu -11 301 132 315 263 114 57 chr13 1603526 1603701 -100269468 - MIR SINE MIR -72 190 6 1532 95 26 35 chr13 1604235 1604467 -100268702 - MER30 DNA MER1_type 0 230 1 25 75 0 0 chr13 1606372 1606425 -100266744 + GC_rich Low_complexity Low_complexity 1 53 0 1681 157 17 27 chr13 1608146 1608439 -100264730 + AluJb SINE Alu 1 290 -22 831 206 6 6 chr13 1608453 1608613 -100264556 + FRAM SINE Alu 2 161 -5 252 0 0 0 chr13 1608634 1608662 -100264507 + (CA)n Simple_repeat Simple_repeat 2 29 0 464 286 24 16 chr13 1608734 1608860 -100264309 - HAL1 LINE L1 -1342 1165 1039 2179 105 0 0 chr13 1608860 1609154 -100264015 + AluSx SINE Alu 1 294 -18 1462 186 14 18 chr13 1609154 1609433 -100263736 - MER65C LTR ERV1 -183 278 1 459 253 74 32 chr13 1609446 1609501 -100263668 + Charlie1a DNA MER1_type 103 154 -2607 1987 131 7 3 chr13 1609501 1609806 -100263363 + AluSx SINE Alu 1 306 -6 459 253 74 32 chr13 1609806 1609940 -100263229 + Charlie1a DNA MER1_type 154 300 -1155 2146 97 0 13 chr13 1609941 1610239 -100262930 + AluSc SINE Alu 1 294 -15 2119 99 3 3 chr13 1610239 1610531 -100262638 + AluSp SINE Alu 1 292 -21 201 195 0 0 chr13 1610602 1610643 -100262526 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 359 177 16 0 chr13 1610643 1610705 -100262464 + Charlie1a DNA MER1_type 351 413 -1042 1955 105 54 0 chr13 1610705 1611000 -100262169 + AluSx SINE Alu 1 311 -1 812 160 0 0 chr13 1611000 1611125 -100262044 - AluJo/FLAM SINE Alu -175 127 3 513 155 21 10 chr13 1611125 1611222 -100261947 - LTR56 LTR ERV1 -303 142 45 1258 148 6 107 chr13 1611223 1611454 -100261715 - AluJo SINE Alu 0 312 124 2258 87 0 0 chr13 1611454 1611752 -100261417 + AluY SINE Alu 1 298 -13 1258 148 6 107 chr13 1611752 1611857 -100261312 - AluJo SINE Alu -188 124 10 296 65 0 43 chr13 1611872 1611918 -100261251 - LTR56 LTR ERV1 -394 51 8 305 181 24 60 chr13 1611920 1612003 -100261166 - MER21B LTR ERV1 -655 208 129 277 203 29 58 chr13 1612066 1612135 -100261034 - MER21B LTR ERV1 -755 108 42 566 171 9 9 chr13 1612149 1612254 -100260915 + FRAM SINE Alu 20 124 -52 207 88 0 0 chr13 1612270 1612304 -100260865 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 254 254 45 37 chr13 1612362 1612496 -100260673 - L1MEd LINE L1 -5981 138 4 1269 168 10 69 chr13 1612523 1612642 -100260527 + AluJb SINE Alu 1 125 -187 1926 131 3 7 chr13 1612642 1612947 -100260222 + AluSg SINE Alu 1 304 -6 1269 168 10 69 chr13 1612947 1612981 -100260188 + AluJb SINE Alu 125 159 -153 2149 104 7 0 chr13 1612981 1613278 -100259891 + AluSp SINE Alu 1 299 -14 786 192 7 13 chr13 1613278 1613429 -100259740 + AluJb SINE Alu 139 288 -24 1269 168 10 69 chr13 1613278 1613427 -100259742 + AluJb SINE Alu 159 286 -26 23 33 0 0 chr13 1613493 1613523 -100259646 + AT_rich Low_complexity Low_complexity 1 30 0 384 257 119 38 chr13 1613527 1613719 -100259450 - L2 LINE L2 -639 2675 2463 2171 73 0 14 chr13 1613719 1614005 -100259164 + AluY SINE Alu 1 282 -29 384 257 119 38 chr13 1614005 1614022 -100259147 - L2 LINE L2 -851 2463 2449 300 226 89 8 chr13 1614158 1614282 -100258887 + AluSq/x SINE Alu 3 136 -166 1565 183 0 14 chr13 1614587 1614882 -100258287 + AluJo SINE Alu 1 291 -21 261 287 136 10 chr13 1614892 1615053 -100258116 + MIR SINE MIR 44 230 -32 198 0 0 0 chr13 1615714 1615736 -100257433 + (ATG)n Simple_repeat Simple_repeat 1 22 0 1907 122 0 34 chr13 1616486 1616813 -100256356 - AluSq SINE Alu 0 317 1 32 26 0 0 chr13 1617027 1617066 -100256103 + AT_rich Low_complexity Low_complexity 1 39 0 1868 119 3 11 chr13 1617111 1617423 -100255746 - AluSq SINE Alu 0 310 1 1849 161 51 106 chr13 1617563 1617672 -100255497 - MER67A LTR ERV1 0 543 430 1363 174 51 11 chr13 1617672 1617947 -100255222 + AluJo SINE Alu 1 286 -26 1849 161 51 106 chr13 1617947 1617959 -100255210 - MER67A LTR ERV1 -113 430 419 1939 107 3 17 chr13 1617959 1618094 -100255075 + AluSx SINE Alu 3 138 -174 2188 113 3 0 chr13 1618094 1618405 -100254764 + AluSp SINE Alu 1 312 -1 1939 107 3 17 chr13 1618405 1618558 -100254611 + AluSx SINE Alu 138 287 -25 2109 95 3 29 chr13 1618559 1618874 -100254295 + AluSg SINE Alu 1 307 -3 1849 161 51 106 chr13 1618874 1619220 -100253949 - MER67A LTR ERV1 -123 420 99 2019 122 6 10 chr13 1619220 1619532 -100253637 + AluSx SINE Alu 1 311 -1 1087 151 0 0 chr13 1619532 1619698 -100253471 + AluSg/x SINE Alu 124 289 -21 1836 160 0 10 chr13 1619709 1620022 -100253147 + AluJo SINE Alu 1 310 -2 183 42 0 0 chr13 1620077 1620101 -100253068 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1859 85 0 0 chr13 1620103 1620338 -100252831 - AluSg SINE Alu -75 235 1 2156 103 7 0 chr13 1620396 1620696 -100252473 - AluSp SINE Alu -11 302 1 1248 95 0 0 chr13 1620698 1620866 -100252303 - AluSg/x SINE Alu -10 302 135 3609 81 35 2 chr13 1621093 1621577 -100251592 - LTR3b LTR ERVK 0 500 1 1850 134 0 7 chr13 1622574 1622872 -100250297 + AluSx SINE Alu 14 309 -3 1085 114 0 13 chr13 1622872 1623061 -100250108 + AluSg/x SINE Alu 134 312 0 2043 120 3 0 chr13 1623073 1623374 -100249795 + AluSq SINE Alu 1 302 -11 2154 69 7 7 chr13 1623874 1624165 -100249004 - AluY SINE Alu -20 291 1 387 247 116 37 chr13 1624167 1624357 -100248812 + L2 LINE L2 2471 2675 -639 23 33 0 0 chr13 1624361 1624391 -100248778 + AT_rich Low_complexity Low_complexity 1 30 0 1269 168 10 69 chr13 1624457 1624606 -100248563 - AluJb SINE Alu -26 286 130 2149 104 7 0 chr13 1624606 1624903 -100248266 - AluSp SINE Alu -14 299 1 1269 168 10 69 chr13 1624903 1624937 -100248232 - AluJb SINE Alu -182 130 96 1926 131 3 7 chr13 1624937 1625242 -100247927 - AluSg SINE Alu -6 304 1 1269 168 10 69 chr13 1625242 1625361 -100247808 - AluJb SINE Alu -216 96 1 254 254 45 37 chr13 1625388 1625522 -100247647 + L1MEd LINE L1 4 138 -5981 207 88 0 0 chr13 1625580 1625614 -100247555 + (TTTAA)n Simple_repeat Simple_repeat 2 35 0 566 171 9 9 chr13 1625630 1625735 -100247434 - FRAM SINE Alu -52 124 20 277 203 29 58 chr13 1625749 1625818 -100247351 + MER21B LTR ERV1 42 108 -755 305 181 24 60 chr13 1625881 1625964 -100247205 + MER21B LTR ERV1 129 208 -655 296 65 0 43 chr13 1625966 1626012 -100247157 + LTR56 LTR ERV1 8 51 -394 1258 148 6 107 chr13 1626027 1626132 -100247037 + AluJo SINE Alu 10 124 -188 2258 87 0 0 chr13 1626132 1626430 -100246739 - AluY SINE Alu -13 298 1 1258 148 6 107 chr13 1626430 1626661 -100246508 + AluJo SINE Alu 124 312 0 513 155 21 10 chr13 1626662 1626759 -100246410 + LTR56 LTR ERV1 45 142 -303 820 154 0 0 chr13 1626759 1626882 -100246287 + AluJo/FLAM SINE Alu 3 125 -187 2144 120 0 7 chr13 1626884 1627192 -100245977 - AluSx SINE Alu -1 311 6 1215 97 16 3 chr13 1627200 1627393 -100245776 + LTR56 LTR ERV1 270 437 0 2055 103 13 17 chr13 1627459 1627761 -100245408 + AluSx SINE Alu 1 301 -11 640 254 53 37 chr13 1627776 1627965 -100245204 + MER21B LTR ERV1 321 512 -351 1920 142 17 0 chr13 1627965 1628261 -100244908 - AluSx SINE Alu -11 301 1 207 0 0 0 chr13 1628263 1628286 -100244883 + (T)n Simple_repeat Simple_repeat 1 23 0 765 210 0 0 chr13 1628292 1628430 -100244739 + FRAM SINE Alu 3 140 -36 572 186 108 44 chr13 1628451 1628782 -100244387 - MER39 LTR ERV1 -262 445 4 2289 87 10 0 chr13 1628913 1629246 -100243923 + AluSp SINE Alu 1 336 0 2087 183 70 47 chr13 1629272 1629314 -100243855 - MER31A LTR ERV1 -4 481 441 2195 76 10 16 chr13 1629314 1629628 -100243541 + AluSx SINE Alu 1 312 0 2087 183 70 47 chr13 1629628 1630055 -100243114 - MER31A LTR ERV1 -44 441 1 375 275 72 62 chr13 1630077 1630270 -100242899 + L1MEd LINE L1 694 888 -5231 390 156 12 0 chr13 1630270 1630344 -100242825 + L1 LINE L1 5180 5259 -887 1951 119 3 7 chr13 1630348 1630641 -100242528 - AluSq SINE Alu -21 292 1 315 118 29 59 chr13 1630682 1630732 -100242437 + L1M LINE L1 5258 5307 -871 868 146 0 8 chr13 1630732 1630862 -100242307 + FLAM_C SINE Alu 1 129 -4 315 118 29 59 chr13 1630862 1630879 -100242290 + L1M LINE L1 5307 5323 -855 1602 173 3 22 chr13 1630879 1631197 -100241972 + AluSx SINE Alu 1 312 0 475 130 0 0 chr13 1631225 1631294 -100241875 + AluS SINE Alu 2 70 -242 2109 100 43 0 chr13 1631676 1631975 -100241194 + AluSx SINE Alu 1 312 0 338 97 0 32 chr13 1631977 1632039 -100241130 + L1PA16 LINE L1 6098 6157 -9 711 219 20 13 chr13 1632397 1632548 -100240621 + FRAM SINE Alu 11 162 -14 545 230 40 8 chr13 1632599 1632725 -100240444 + FLAM_A SINE Alu 1 130 -3 2267 91 0 0 chr13 1632872 1633169 -100240000 + AluSx SINE Alu 1 297 -15 1585 194 3 13 chr13 1633701 1634010 -100239159 + AluJo SINE Alu 1 306 -6 1683 164 21 0 chr13 1634014 1634301 -100238868 + AluSx SINE Alu 4 296 -16 324 176 44 15 chr13 1634340 1634408 -100238761 - L1ME LINE L1 -603 5561 5492 840 145 0 0 chr13 1634409 1634540 -100238629 + FLAM_C SINE Alu 2 132 -1 364 163 90 14 chr13 1634564 1634677 -100238492 - L1ME LINE L1 -801 5345 5227 810 144 0 85 chr13 1634681 1634717 -100238452 - FLAM_C SINE Alu -171 141 104 2112 99 7 10 chr13 1634717 1635020 -100238149 + AluSq SINE Alu 1 302 -11 810 144 0 85 chr13 1635020 1635136 -100238033 - FLAM_C SINE Alu -208 104 2 783 202 31 73 chr13 1635139 1635426 -100237743 - L1ME LINE L1 -918 5228 4954 616 267 107 21 chr13 1635439 1635720 -100237449 + L1M4 LINE L1 4726 5030 -1116 1113 193 148 37 chr13 1635963 1636233 -100236936 + AluJo SINE Alu 3 302 0 2035 123 3 0 chr13 1636369 1636669 -100236500 + AluSx SINE Alu 1 301 -11 2144 96 0 7 chr13 1636837 1637138 -100236031 + AluSx SINE Alu 1 299 -13 2050 90 43 13 chr13 1637289 1637589 -100235580 - AluSx SINE Alu -3 309 1 1809 158 7 0 chr13 1637683 1637975 -100235194 + AluJb SINE Alu 5 298 -14 2188 78 41 0 chr13 1637977 1638270 -100234899 + AluY SINE Alu 1 305 -6 1509 122 95 8 chr13 1638293 1638555 -100234614 + AluSg SINE Alu 1 285 -25 922 191 0 0 chr13 1638562 1638724 -100234445 + AluJb SINE Alu 134 295 -17 895 194 56 6 chr13 1638954 1639134 -100234035 + MER20 DNA MER1_type 1 189 -30 436 247 37 74 chr13 1639147 1639337 -100233832 + HAL1 LINE L1 2194 2376 -131 828 233 18 0 chr13 1639345 1639508 -100233661 + FAM SINE Alu 1 166 -9 1584 153 21 28 chr13 1639514 1639801 -100233368 + AluJb SINE Alu 2 286 -26 32 57 0 0 chr13 1639801 1639854 -100233315 + AT_rich Low_complexity Low_complexity 1 53 0 309 241 86 69 chr13 1639854 1639970 -100233199 + HAL1 LINE L1 2367 2484 -23 807 167 48 12 chr13 1639974 1640142 -100233027 - AluJb SINE Alu -4 308 135 484 149 11 23 chr13 1640142 1640229 -100232940 - Tigger3(Golem) DNA MER2_type -2931 98 13 738 318 82 23 chr13 1640240 1640583 -100232586 + L2 LINE L2 2371 2733 -581 2259 77 0 0 chr13 1640627 1640912 -100232257 - AluSx SINE Alu -27 285 1 2361 45 41 0 chr13 1641062 1641354 -100231815 - AluY SINE Alu -7 304 1 23 68 0 0 chr13 1641369 1641413 -100231756 + AT_rich Low_complexity Low_complexity 1 44 0 249 100 60 0 chr13 1641898 1641948 -100231221 - L1MB7 LINE L1 0 6184 6132 * 1902 191 66 41 chr13 1641943 1642328 -100230841 - L1MB8 LINE L1 -104 6074 5673 2071 96 0 13 chr13 1642328 1642629 -100230540 - AluSg1 SINE Alu -12 297 1 1902 191 66 41 chr13 1642629 1642726 -100230443 - L1MB8 LINE L1 -505 5673 5580 1150 123 22 0 chr13 1642731 1642910 -100230259 - AluSg/x SINE Alu -9 301 119 619 141 106 173 chr13 1642929 1643027 -100230142 - L1MB8 LINE L1 -587 5597 5494 1774 160 0 19 chr13 1643027 1643345 -100229824 - AluSx SINE Alu 0 312 1 619 141 106 173 chr13 1643345 1643429 -100229740 - L1MB8 LINE L1 -690 5494 5434 2083 125 0 6 chr13 1643429 1643741 -100229428 - AluSx SINE Alu -2 310 1 619 141 106 173 chr13 1643741 1643812 -100229357 - L1MB8 LINE L1 -750 5434 5360 2072 122 0 0 chr13 1644965 1645261 -100227908 + AluSx SINE Alu 1 296 -16 31 26 0 0 chr13 1645579 1645617 -100227552 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 1645791 1645813 -100227356 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr13 1645974 1645995 -100227174 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 740 179 8 0 chr13 1645999 1646116 -100227053 - FLAM_C SINE Alu -15 118 1 1939 138 3 0 chr13 1646289 1646587 -100226582 + AluSx SINE Alu 1 299 -13 535 248 24 0 chr13 1646934 1647059 -100226110 + FLAM_A SINE Alu 2 129 -4 2025 90 57 13 chr13 1647118 1647438 -100225731 - AluSq SINE Alu 0 313 1 1859 148 3 0 chr13 1647473 1647763 -100225406 + AluSc SINE Alu 1 291 -18 1924 132 7 23 chr13 1648231 1648369 -100224800 + AluSx SINE Alu 1 140 -172 1998 121 16 3 chr13 1648369 1648676 -100224493 + AluSq SINE Alu 3 313 0 1924 132 7 23 chr13 1648676 1648847 -100224322 + AluSx SINE Alu 140 305 -7 1801 128 115 10 chr13 1649105 1649410 -100223759 + MER1B DNA MER1_type 1 337 0 1891 131 35 7 chr13 1649472 1649762 -100223407 + AluJb SINE Alu 1 298 -14 339 82 260 14 chr13 1649783 1649856 -100223313 + HY1 scRNA scRNA 11 101 -11 2227 93 3 13 chr13 1649878 1650188 -100222981 + AluSq SINE Alu 2 308 -5 3609 81 35 2 chr13 1651281 1651765 -100221404 + LTR3b LTR ERVK 1 500 0 1248 95 0 0 chr13 1651992 1652160 -100221009 + AluSg/x SINE Alu 135 302 -10 2156 103 7 0 chr13 1652162 1652462 -100220707 + AluSp SINE Alu 1 302 -11 1859 85 0 0 chr13 1652520 1652755 -100220414 + AluSg SINE Alu 1 235 -75 183 42 0 0 chr13 1652757 1652781 -100220388 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1836 160 0 10 chr13 1652836 1653149 -100220020 - AluJo SINE Alu -2 310 1 1087 151 0 0 chr13 1653160 1653326 -100219843 - AluSg/x SINE Alu -21 291 126 2019 122 6 10 chr13 1653326 1653638 -100219531 - AluSx SINE Alu -1 311 1 1849 161 51 106 chr13 1653638 1653984 -100219185 + MER67A LTR ERV1 99 463 -80 2109 95 3 29 chr13 1653984 1654299 -100218870 - AluSg SINE Alu -3 307 1 1939 107 3 17 chr13 1654300 1654453 -100218716 - AluSx SINE Alu -25 287 138 2188 113 3 0 chr13 1654453 1654764 -100218405 - AluSp SINE Alu -1 312 1 1939 107 3 17 chr13 1654764 1654899 -100218270 - AluSx SINE Alu -174 138 3 1849 161 51 106 chr13 1654899 1654911 -100218258 + MER67A LTR ERV1 463 474 -69 1363 174 51 11 chr13 1654911 1655186 -100217983 - AluJo SINE Alu -26 286 1 1849 161 51 106 chr13 1655186 1655295 -100217874 + MER67A LTR ERV1 474 543 0 2106 122 0 28 chr13 1655435 1655572 -100217597 + AluSx SINE Alu 1 140 -172 2251 94 0 3 chr13 1655572 1655881 -100217288 + AluSg SINE Alu 1 308 -2 2477 64 0 0 chr13 1655883 1656194 -100216975 + AluY SINE Alu 1 311 0 2106 122 0 28 chr13 1656194 1656373 -100216796 + AluSx SINE Alu 141 311 -1 559 317 107 7 chr13 1656376 1656676 -100216493 + L1MEc LINE L1 100 429 -5967 1865 123 0 60 chr13 1656679 1656857 -100216312 - AluSx SINE Alu -15 297 145 1972 127 0 16 chr13 1656857 1657164 -100216005 - AluSx SINE Alu -10 302 1 1865 123 0 60 chr13 1657164 1657301 -100215868 - AluSx SINE Alu -167 145 1 888 226 147 55 chr13 1657306 1657698 -100215471 + MER57A LTR ERV1 1 401 -2 679 276 50 40 chr13 1657917 1658010 -100215159 + Charlie1a DNA MER1_type 1 92 -2669 2315 167 17 32 chr13 1658010 1658198 -100214971 - MER65C LTR ERV1 0 461 272 2283 82 0 0 chr13 1658198 1658490 -100214679 + AluY SINE Alu 2 293 -18 2315 167 17 32 chr13 1658490 1658769 -100214400 - MER65C LTR ERV1 -189 272 1 679 276 50 40 chr13 1658769 1658837 -100214332 + Charlie1a DNA MER1_type 92 158 -2603 1987 131 7 3 chr13 1658837 1659142 -100214027 + AluSx SINE Alu 1 306 -6 679 276 50 40 chr13 1659142 1659276 -100213893 + Charlie1a DNA MER1_type 158 300 -1155 2146 97 0 13 chr13 1659277 1659575 -100213594 + AluSc SINE Alu 1 294 -15 2119 99 3 3 chr13 1659575 1659867 -100213302 + AluSp SINE Alu 1 292 -21 201 195 0 0 chr13 1659938 1659979 -100213190 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 1870 170 19 43 chr13 1659979 1660041 -100213128 + Charlie1a DNA MER1_type 351 413 -2348 1952 103 55 0 chr13 1660041 1660333 -100212836 + AluSx SINE Alu 1 308 -4 1870 170 19 43 chr13 1660333 1660641 -100212528 + Charlie1a DNA MER1_type 413 712 -743 809 158 0 0 chr13 1660641 1660768 -100212401 + FLAM_C SINE Alu 1 127 -16 1185 156 15 65 chr13 1660874 1660955 -100212214 - L1M3 LINE L1 -455 5728 5645 2341 129 36 80 chr13 1660955 1661403 -100211766 + MSTC LTR MaLR 1 428 0 1185 156 15 65 chr13 1661403 1661584 -100211585 - L1M3 LINE L1 -538 5645 5479 1864 119 51 0 chr13 1661622 1661916 -100211253 - AluSq SINE Alu -4 309 1 1929 147 0 69 chr13 1661946 1662083 -100211086 + MER47A DNA MER2_type 32 177 -2146 1962 128 17 3 chr13 1662083 1662379 -100210790 + AluSq SINE Alu 1 300 -13 1929 147 0 69 chr13 1662379 1662601 -100210568 + MER47A DNA MER2_type 177 366 0 324 146 0 0 chr13 1662625 1662673 -100210496 - L1M3 LINE L1 -704 5467 5420 * 356 243 38 84 chr13 1662668 1662787 -100210382 - L1M4c LINE L1 -4226 2158 2035 428 192 211 19 chr13 1662787 1662891 -100210278 + FLAM_A SINE Alu 1 124 -9 356 243 38 84 chr13 1662891 1662948 -100210221 - L1M4c LINE L1 -4349 2035 1977 2004 115 0 7 chr13 1662948 1663267 -100209902 - AluSx SINE Alu 0 319 3 356 243 38 84 chr13 1663267 1663400 -100209769 - L1M4c LINE L1 -4407 1977 1768 318 83 0 21 chr13 1663496 1663544 -100209625 - Alu SINE Alu -222 78 32 1613 186 25 74 chr13 1863671 1863837 -100009332 + MLT1A2 LTR MaLR 1 173 -201 2090 129 10 3 chr13 1863837 1864132 -100009037 + AluSx SINE Alu 1 297 -15 1613 186 25 74 chr13 1864132 1864329 -100008840 + MLT1A2 LTR MaLR 173 346 -28 278 25 0 25 chr13 1864329 1864369 -100008800 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1613 186 25 74 chr13 1864369 1864397 -100008772 + MLT1A2 LTR MaLR 346 374 0 1860 151 6 28 chr13 1864403 1864722 -100008447 - AluJo SINE Alu 0 312 1 332 329 70 35 chr13 1864730 1864958 -100008211 - L1M4 LINE L1 -3568 2578 2343 939 288 22 38 chr13 1865011 1865327 -100007842 - LTR16A LTR ERVL -32 418 108 22 0 0 0 chr13 1865487 1865509 -100007660 + AT_rich Low_complexity Low_complexity 1 22 0 2153 115 3 0 chr13 1865641 1865929 -100007240 - AluSg SINE Alu -21 289 1 2310 115 0 0 chr13 1866226 1866538 -100006631 - AluSx SINE Alu 0 312 1 2001 137 3 10 chr13 1866602 1866908 -100006261 - AluSx SINE Alu -8 304 1 946 164 55 6 chr13 1866911 1867034 -100006135 - L1M3 LINE L1 -560 5611 5475 207 0 0 0 chr13 1867034 1867057 -100006112 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 946 164 55 6 chr13 1867057 1867116 -100006053 - L1M3 LINE L1 -696 5475 5420 725 179 17 0 chr13 1867116 1867233 -100005936 - AluSg/x SINE Alu -9 303 185 2200 99 7 0 chr13 1867911 1868219 -100004950 + AluSq SINE Alu 1 310 0 33 66 0 0 chr13 1868535 1868596 -100004573 + AT_rich Low_complexity Low_complexity 1 61 0 1797 98 70 35 chr13 1868624 1868909 -100004260 - AluSg SINE Alu -15 295 1 803 100 0 50 chr13 1868928 1869048 -100004121 - AluSg/x SINE Alu -11 301 188 35 0 0 0 chr13 1869077 1869112 -100004057 + AT_rich Low_complexity Low_complexity 1 35 0 4839 36 0 23 chr13 1869112 1869687 -100003482 - L1PA4 LINE L1 -3 6152 5591 2043 106 39 7 chr13 1869696 1869979 -100003190 + AluSx SINE Alu 1 292 -20 1527 142 138 87 chr13 1870040 1870492 -100002677 + LTR54B LTR ERV1 1 479 -19 2512 76 0 0 chr13 1870492 1870795 -100002374 - AluSx SINE Alu -9 303 1 1527 142 138 87 chr13 1870795 1870814 -100002355 + LTR54B LTR ERV1 479 496 -2 24 53 0 0 chr13 1870837 1870875 -100002294 + AT_rich Low_complexity Low_complexity 1 38 0 489 273 8 8 chr13 1871241 1871373 -100001796 - MIR SINE MIR -15 247 116 254 326 31 8 chr13 1871391 1871520 -100001649 + L1MC4a LINE L1 5793 5924 -1884 1857 160 20 0 chr13 1872499 1872805 -100000364 + AluSx SINE Alu 1 312 0 935 286 54 27 chr13 1872819 1873189 -99999980 - MER93a LTR ERV1 -4 398 19 1446 185 15 59 chr13 1873192 1873516 -99999653 - AluJo SINE Alu -2 310 1 918 213 81 52 chr13 1873527 1873935 -99999234 + Charlie2 DNA MER1_type 2235 2654 -208 1439 171 0 28 chr13 1873938 1874190 -99998979 + AluJo SINE Alu 47 291 -21 876 249 95 21 chr13 1874208 1874411 -99998758 - Charlie2 DNA MER1_type -639 2223 1984 1802 211 32 51 chr13 1874411 1874884 -99998285 - MLT1C LTR MaLR -3 464 1 876 249 95 21 chr13 1874884 1875017 -99998152 - Charlie2 DNA MER1_type -878 1984 1862 498 264 218 0 chr13 1875029 1875245 -99997924 - Charlie2 DNA MER1_type -2540 322 60 278 258 89 16 chr13 1875851 1875975 -99997194 + L1MC4a LINE L1 5765 5897 -1911 2160 115 0 3 chr13 1876147 1876442 -99996727 - AluSx SINE Alu -18 294 1 221 188 29 29 chr13 1876458 1876527 -99996642 + A-rich Low_complexity Low_complexity 4 72 0 1918 140 0 0 chr13 1876743 1877014 -99996155 - AluSx SINE Alu -32 280 10 21 0 0 0 chr13 1877181 1877202 -99995967 + AT_rich Low_complexity Low_complexity 1 21 0 1705 93 0 25 chr13 1877215 1877451 -99995718 + AluSp SINE Alu 84 313 0 528 293 77 34 chr13 1877541 1877838 -99995331 + L2 LINE L2 2551 2860 -454 474 350 79 18 chr13 1877931 1878208 -99994961 + L2 LINE L2 3019 3312 -1 2336 55 0 61 chr13 1878487 1878831 -99994338 - AluY SINE Alu 0 311 1 2132 107 6 31 chr13 1878923 1879135 -99994034 - AluSq SINE Alu -4 309 106 234 0 0 0 chr13 1879135 1879161 -99994008 + (CTAGG)n Simple_repeat Simple_repeat 4 29 0 2132 107 6 31 chr13 1879161 1879265 -99993904 - AluSq SINE Alu -207 106 1 3405 150 14 12 chr13 1879511 1880085 -99993084 + L1MC1 LINE L1 5428 6002 -331 1247 158 27 18 chr13 1880111 1880333 -99992836 + L1MC1 LINE L1 6104 6327 -6 216 0 0 0 chr13 1880432 1880456 -99992713 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1501 155 22 43 chr13 1880484 1880599 -99992570 + AluJb SINE Alu 26 142 -170 2176 114 6 19 chr13 1880599 1880915 -99992254 + AluSx SINE Alu 1 312 0 1501 155 22 43 chr13 1880915 1881076 -99992093 + AluJb SINE Alu 142 296 -16 2189 116 7 0 chr13 1881078 1881380 -99991789 + AluSg SINE Alu 1 304 -6 340 118 29 15 chr13 1881399 1881467 -99991702 + GA-rich Low_complexity Low_complexity 4 72 0 1033 168 0 53 chr13 1881467 1881657 -99991512 + AluJo SINE Alu 6 185 -127 37 0 0 0 chr13 1881657 1881694 -99991475 + AT_rich Low_complexity Low_complexity 1 37 0 2302 181 18 2 chr13 1881817 1882214 -99990955 + MER57A LTR ERV1 1 403 0 204 295 16 0 chr13 1882279 1882340 -99990829 - MIR3 SINE MIR -3 205 144 1290 110 53 57 chr13 1882377 1882605 -99990564 - MER30 DNA MER1_type 0 230 4 4597 151 49 21 chr13 1882668 1882879 -99990290 + L1MA8 LINE L1 5107 5311 -980 1826 148 0 40 chr13 1882879 1883183 -99989986 + AluSx SINE Alu 1 292 -20 4597 151 49 21 chr13 1883183 1883194 -99989975 + L1MA8 LINE L1 5311 5320 -971 4597 137 32 30 chr13 1883194 1884002 -99989167 + L1MA8 LINE L1 5480 6289 -2 4597 151 49 21 chr13 1884002 1884023 -99989146 + L1MA8 LINE L1 5320 6289 -2 247 263 102 68 chr13 1884234 1884317 -99988852 - MIR3 SINE MIR -30 178 88 1443 201 110 48 chr13 1884317 1884690 -99988479 + MSTD LTR MaLR 1 396 0 247 263 102 68 chr13 1884690 1884724 -99988445 - MIR3 SINE MIR -120 88 57 2508 75 0 3 chr13 1884874 1885179 -99987990 + AluSc SINE Alu 1 304 -5 531 201 56 153 chr13 1885278 1885566 -99987603 - MER112 DNA MER1_type 0 260 1 2408 52 42 0 chr13 1885598 1885887 -99987282 - AluY SINE Alu -10 301 1 209 204 20 20 chr13 1885961 1886010 -99987159 + MIR SINE MIR 4 52 -210 2036 144 3 3 chr13 1886285 1886583 -99986586 - AluSx SINE Alu -14 298 1 270 0 0 0 chr13 1886610 1886640 -99986529 + (TTA)n Simple_repeat Simple_repeat 2 31 0 513 278 37 53 chr13 1886743 1886988 -99986181 - MIR SINE MIR 0 262 22 1217 84 0 0 chr13 1887102 1887257 -99985912 - AluSg/x SINE Alu -21 289 135 184 260 20 0 chr13 1887269 1887319 -99985850 - MIR SINE MIR -110 152 102 2393 170 46 11 chr13 1887456 1887915 -99985254 - L1MB7 LINE L1 -16 6168 5694 21 82 0 0 chr13 1889775 1889824 -99983345 + GC_rich Low_complexity Low_complexity 1 49 0 209 221 47 35 chr13 1889932 1890018 -99983151 + G-rich Low_complexity Low_complexity 4 90 0 24 67 0 0 chr13 1890142 1890187 -99982982 + GC_rich Low_complexity Low_complexity 1 45 0 213 185 83 28 chr13 1890661 1890769 -99982400 + (CGGGG)n Simple_repeat Simple_repeat 1 114 0 * 223 167 61 0 chr13 1890714 1890780 -99982389 + (CGG)n Simple_repeat Simple_repeat 1 70 0 24 32 0 0 chr13 1890812 1890843 -99982326 + GC_rich Low_complexity Low_complexity 1 31 0 313 229 46 37 chr13 1892683 1892792 -99980377 - L1MC5 LINE L1 -30 7931 7822 21 36 0 0 chr13 1893989 1894017 -99979152 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr13 1894059 1894079 -99979090 + (TA)n Simple_repeat Simple_repeat 2 21 0 2309 117 3 0 chr13 1894079 1894386 -99978783 - AluSq SINE Alu -5 308 1 2017 89 22 61 chr13 1894387 1894700 -99978469 - AluSx SINE Alu -11 301 1 2060 133 10 0 chr13 1895659 1895959 -99977210 + AluSx SINE Alu 1 303 -9 812 160 0 0 chr13 1896002 1896127 -99977042 - FLAM_C SINE Alu -18 125 1 783 107 99 0 chr13 1896541 1896662 -99976507 + L1PA6 LINE L1 6022 6154 0 2238 110 3 19 chr13 1897331 1897641 -99975528 - AluSx SINE Alu -7 305 1 2118 107 4 0 chr13 1897679 1897996 -99975173 - AluSp SINE Alu 0 318 1 1914 119 49 0 chr13 1898017 1898303 -99974866 - AluSp SINE Alu -13 300 1 439 241 35 28 chr13 1899032 1899177 -99973992 + L1ME1 LINE L1 6017 6162 -4 269 290 142 41 chr13 1899194 1899363 -99973806 + MIR SINE MIR 64 249 -13 2062 105 0 60 chr13 1899810 1900124 -99973045 - AluSq SINE Alu -18 295 1 256 304 54 18 chr13 1900918 1901030 -99972139 + MIR SINE MIR 42 157 -105 198 0 0 0 chr13 1902163 1902185 -99970984 + (A)n Simple_repeat Simple_repeat 1 22 0 314 333 106 80 chr13 1902223 1902637 -99970532 - L2 LINE L2 -4 3268 2844 210 191 0 0 chr13 1902783 1902825 -99970344 + (TA)n Simple_repeat Simple_repeat 1 42 0 2223 124 3 0 chr13 1902825 1903132 -99970037 - AluSp SINE Alu -5 308 1 382 321 194 19 chr13 1903185 1903562 -99969607 - L2 LINE L2 -697 2617 2175 761 294 127 20 chr13 1904004 1904406 -99968763 - L1MC4a LINE L1 -1896 5912 5468 258 81 0 0 chr13 1904460 1904497 -99968672 + (TA)n Simple_repeat Simple_repeat 1 37 0 2408 90 0 0 chr13 1904498 1904799 -99968370 - AluSq SINE Alu -12 301 1 2350 104 0 13 chr13 1904951 1905267 -99967902 + AluSx SINE Alu 1 312 0 1429 134 36 13 chr13 1905305 1905529 -99967640 - MER30 DNA MER1_type 0 230 2 338 228 49 41 chr13 1905543 1905666 -99967503 + L1M4 LINE L1 4487 4610 -1536 447 288 134 22 chr13 1905831 1906041 -99967128 - L1MC4a LINE L1 -1904 5904 5644 2229 96 14 0 chr13 1906041 1906332 -99966837 - AluSg SINE Alu -15 295 1 447 288 134 22 chr13 1906332 1906441 -99966728 - L1MC4a LINE L1 -2164 5644 5549 2996 185 63 9 chr13 1906752 1907400 -99965769 - L1MB4 LINE L1 -14 6166 5484 405 0 0 0 chr13 1907424 1907469 -99965700 + (TATG)n Simple_repeat Simple_repeat 3 47 0 743 173 0 39 chr13 1907469 1907587 -99965582 - FLAM_C SINE Alu -187 115 1 2226 115 13 0 chr13 1907614 1907918 -99965251 + AluSc SINE Alu 1 308 -1 1838 187 66 0 chr13 1907970 1908333 -99964836 - L1MB2 LINE L1 -2 6169 5783 * 2423 214 109 71 chr13 1908326 1908747 -99964422 - L1M4 LINE L1 -3493 3151 2747 815 169 0 29 chr13 1908747 1908883 -99964286 - FLAM_C SINE Alu -1 132 1 2423 214 109 71 chr13 1908883 1909041 -99964128 - L1M4 LINE L1 -3897 2747 2596 2334 77 10 13 chr13 1909041 1909352 -99963817 - AluY SINE Alu -1 310 1 2423 214 109 71 chr13 1909352 1909443 -99963726 - L1M4 LINE L1 -4048 2596 2510 2225 98 0 3 chr13 1909443 1909739 -99963430 - AluY SINE Alu -16 295 1 2423 214 109 71 chr13 1909739 1909977 -99963192 - L1M4 LINE L1 -4134 2510 2282 2273 87 7 10 chr13 1909977 1910277 -99962892 - AluSp SINE Alu -14 299 1 2423 214 109 71 chr13 1910277 1910898 -99962271 - L1M4 LINE L1 -4362 2282 1566 291 236 59 98 chr13 1910901 1911104 -99962065 - L1M4 LINE L1 -5520 1022 828 328 344 43 66 chr13 1911245 1911550 -99961619 - L1M4 LINE L1 -6084 562 265 41 14 5 0 chr13 1911611 1911694 -99961475 + AT_rich Low_complexity Low_complexity 1 48 0 326 269 138 30 chr13 1911776 1912032 -99961137 - L1M4 LINE L1 -1173 4973 4657 2311 113 0 3 chr13 1912032 1912342 -99960827 + AluSx SINE Alu 1 309 -3 326 269 138 30 chr13 1912342 1912483 -99960686 - L1M4 LINE L1 -1489 4657 4533 1721 197 3 0 chr13 1912552 1912888 -99960281 + AluJo SINE Alu 1 337 0 1050 134 24 93 chr13 1912896 1913142 -99960027 - L1MC5 LINE L1 -1023 6938 6710 796 283 112 40 chr13 1913145 1913788 -99959381 - HAL1 LINE L1 -1400 1107 419 2019 112 0 0 chr13 1913844 1914113 -99959056 - AluSx SINE Alu -6 306 38 392 42 0 0 chr13 1914162 1914210 -99958959 + MADE1 DNA Mariner 1 48 -32 627 269 10 35 chr13 1914345 1914546 -99958623 - HAL1 LINE L1 -2272 235 40 377 392 25 32 chr13 1914563 1914710 -99958459 - L1M4 LINE L1 -1821 4325 4179 2233 111 0 3 chr13 1914710 1915008 -99958161 - AluSx SINE Alu -15 297 1 377 392 25 32 chr13 1915008 1915138 -99958031 - L1M4 LINE L1 -1967 4179 4050 1912 159 3 0 chr13 1915181 1915490 -99957679 - AluJb SINE Alu -2 310 1 1737 192 0 0 chr13 1916689 1916986 -99956183 - AluJb SINE Alu -15 297 1 1291 135 19 126 chr13 1917122 1917463 -99955706 + AluJo SINE Alu 1 307 0 1294 194 3 45 chr13 1917465 1917754 -99955415 + AluJo SINE Alu 1 277 -35 251 27 0 27 chr13 1917756 1917793 -99955376 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 458 171 128 8 chr13 1917825 1917942 -99955227 + FLAM_A SINE Alu 12 142 0 24 32 0 0 chr13 1918123 1918154 -99955015 + AT_rich Low_complexity Low_complexity 1 31 0 264 321 169 27 chr13 1918263 1918383 -99954786 - MIR SINE MIR 0 262 160 2372 84 0 28 chr13 1918383 1918703 -99954466 + AluSx SINE Alu 1 311 -1 264 321 169 27 chr13 1918703 1918766 -99954403 - MIR SINE MIR -102 160 53 2090 103 3 3 chr13 1918831 1919122 -99954047 - AluSg SINE Alu -17 293 3 382 116 0 23 chr13 1919134 1919220 -99953949 + (TG)n Simple_repeat Simple_repeat 2 85 0 1214 181 23 5 chr13 1919257 1919473 -99953696 - AluJb SINE Alu -92 220 1 213 264 14 56 chr13 1919973 1920045 -99953124 - L2 LINE L2 -6 3266 3198 2043 92 16 33 chr13 1920059 1920363 -99952806 + AluSc SINE Alu 1 299 -10 1735 86 117 52 chr13 1920815 1920861 -99952308 - L1MA2 LINE L1 -6 6298 6256 1804 141 0 0 chr13 1920861 1921123 -99952046 - AluSx SINE Alu -8 304 43 1735 86 117 52 chr13 1921123 1921400 -99951769 - L1MA2 LINE L1 -48 6256 5954 668 292 107 0 chr13 1921465 1921698 -99951471 + L2 LINE L2 2523 2780 -534 325 250 29 59 chr13 1921701 1921837 -99951332 + L2 LINE L2 3182 3313 0 476 333 52 26 chr13 1921861 1922092 -99951077 + L2 LINE L2 2823 3059 -254 422 120 13 0 chr13 1922610 1922685 -99950484 + (TG)n Simple_repeat Simple_repeat 1 76 0 1884 159 3 20 chr13 1922685 1922981 -99950188 - AluJo SINE Alu -21 291 1 250 241 38 38 chr13 1922987 1923066 -99950103 + L2 LINE L2 3186 3264 -8 204 272 49 25 chr13 1923091 1923172 -99949997 + MIR SINE MIR 47 129 -133 1756 144 4 14 chr13 1923176 1923453 -99949716 - AluJb SINE Alu 0 312 39 822 202 31 40 chr13 1923455 1923678 -99949491 - MLT1D LTR MaLR -283 222 2 1420 154 75 26 chr13 1923832 1923959 -99949210 + AluJb SINE Alu 1 120 -192 189 0 0 0 chr13 1923959 1923980 -99949189 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1420 154 75 26 chr13 1923980 1924119 -99949050 + AluJb SINE Alu 120 280 -32 885 104 0 22 chr13 1925760 1925894 -99947275 + FLAM_C SINE Alu 1 131 -2 2056 107 21 17 chr13 1926060 1926350 -99946819 - AluSx SINE Alu -21 291 1 25 23 0 23 chr13 1926381 1926406 -99946763 + AT_rich Low_complexity Low_complexity 1 26 -16 1570 190 0 40 chr13 1926406 1926706 -99946463 - AluJo SINE Alu -24 288 1 25 23 0 23 chr13 1926706 1926723 -99946446 + AT_rich Low_complexity Low_complexity 26 42 0 284 233 27 0 chr13 1926786 1926859 -99946310 - L1MA10 LINE L1 0 6334 6260 31 0 0 0 chr13 1926913 1926944 -99946225 + AT_rich Low_complexity Low_complexity 1 31 0 1523 153 120 7 chr13 1926966 1927240 -99945929 - AluSg1 SINE Alu -4 305 1 1078 178 28 37 chr13 1927352 1927566 -99945603 + AluJb SINE Alu 85 296 -16 1640 180 0 48 chr13 1927861 1928006 -99945163 + AluJo SINE Alu 2 126 -186 2014 116 34 0 chr13 1928006 1928298 -99944871 + AluSx SINE Alu 1 302 -10 1640 180 0 48 chr13 1928298 1928463 -99944706 + AluJo SINE Alu 126 297 -15 437 239 0 18 chr13 1928487 1928600 -99944569 + FAM SINE Alu 41 151 -34 407 197 0 0 chr13 1928857 1928933 -99944236 - L1ME LINE L1 -437 5684 5609 210 118 0 0 chr13 1929068 1929102 -99944067 + (TG)n Simple_repeat Simple_repeat 2 35 0 227 256 47 12 chr13 1929104 1929190 -99943979 - L1ME LINE L1 -507 5614 5526 13410 126 85 16 chr13 1930754 1931372 -99941797 + Tigger1 DNA MER2_type 1 575 -1843 1628 174 24 17 chr13 1931372 1931659 -99941510 - AluJb SINE Alu -23 289 1 13410 126 85 16 chr13 1931659 1932671 -99940498 + Tigger1 DNA MER2_type 575 1834 -584 2019 152 7 0 chr13 1932671 1932974 -99940195 + AluSx SINE Alu 1 305 -7 13410 126 85 16 chr13 1932974 1933603 -99939566 + Tigger1 DNA MER2_type 1834 2418 0 358 254 182 22 chr13 1933856 1934037 -99939132 - MIR SINE MIR -2 260 51 648 155 105 33 chr13 1934058 1934239 -99938930 - L1MA8 LINE L1 -3 6288 6095 2054 128 0 49 chr13 1935183 1935510 -99937659 - AluSx SINE Alu -1 311 1 2274 68 0 4 chr13 1935809 1936115 -99937054 - AluY SINE Alu 0 306 2 1748 179 3 10 chr13 1937509 1937810 -99935359 + AluJo SINE Alu 1 299 -13 282 164 295 0 chr13 1938290 1938351 -99934818 - Tigger5 DNA MER2_type -2244 79 1 242 224 0 0 chr13 1938388 1938437 -99934732 - Tigger5 DNA MER2_type -17 2306 2258 * 405 188 52 31 chr13 1938418 1938514 -99934655 + Tigger5 DNA MER2_type 2226 2323 0 2310 86 0 3 chr13 1938704 1938995 -99934174 - AluSq SINE Alu -20 293 4 247 211 28 28 chr13 1939023 1939094 -99934075 - L1 LINE L1 -3324 2822 2752 382 266 62 76 chr13 1939134 1939182 -99933987 - L1 LINE L1 -2227 3919 3872 2128 127 3 0 chr13 1939182 1939482 -99933687 - AluSx SINE Alu -11 301 1 382 266 62 76 chr13 1939482 1939509 -99933660 - L1 LINE L1 -2274 3872 3846 914 204 90 75 chr13 1939509 1939693 -99933476 + MER44D DNA MER2_type 2 182 -2309 2002 145 0 3 chr13 1939693 1939989 -99933180 - AluSx SINE Alu -14 298 4 914 204 90 75 chr13 1939989 1940137 -99933032 + MER44D DNA MER2_type 182 609 0 382 266 62 76 chr13 1940137 1940350 -99932819 - L1 LINE L1 -2300 3846 3634 380 275 159 48 chr13 1940356 1940665 -99932504 + L1 LINE L1 2995 3337 -2809 244 290 50 0 chr13 1940841 1940941 -99932228 + L1 LINE L1 3515 3619 -2527 7987 217 67 46 chr13 1940964 1941745 -99931424 - L1MB4 LINE L1 -6 6410 5647 1770 151 6 25 chr13 1941745 1942063 -99931106 - AluSx SINE Alu 0 312 1 7987 217 67 46 chr13 1942063 1942166 -99931003 - L1MB4 LINE L1 -769 5647 5548 2172 118 0 0 chr13 1942166 1942500 -99930669 - AluSg SINE Alu 0 310 1 1391 159 23 0 chr13 1942503 1942767 -99930402 - L1MA5 LINE L1 0 6300 6031 7987 217 67 46 chr13 1942767 1942813 -99930356 - L1MB4 LINE L1 -869 5547 5503 1113 196 35 4 chr13 1942813 1943042 -99930127 - MER46A DNA MER2_type 0 236 1 7987 217 67 46 chr13 1943042 1943127 -99930042 - L1MB4 LINE L1 -913 5503 5421 2117 112 3 22 chr13 1943127 1943304 -99929865 - AluSx SINE Alu -3 309 139 2173 115 3 3 chr13 1943304 1943609 -99929560 - AluSx SINE Alu -5 307 3 2117 112 3 22 chr13 1943609 1943744 -99929425 - AluSx SINE Alu -173 139 3 1907 146 3 14 chr13 1943746 1944041 -99929128 - AluSx SINE Alu -20 292 1 7987 217 67 46 chr13 1944041 1945632 -99927537 - L1MB4 LINE L1 -995 5421 3864 2144 100 0 4 chr13 1945632 1945933 -99927236 - AluSc SINE Alu 0 300 1 7987 217 67 46 chr13 1945933 1946324 -99926845 - L1MB4 LINE L1 -2552 3864 3483 2090 128 17 0 chr13 1946324 1946620 -99926549 - AluSx SINE Alu -9 303 3 7987 217 67 46 chr13 1946620 1948607 -99924562 - L1MB4 LINE L1 -2933 3483 1169 617 270 144 46 chr13 1948623 1948908 -99924261 - L1MDa LINE L1 -5898 642 330 * 1225 226 82 45 chr13 1948904 1949750 -99923419 - L1MDa LINE L1 -4745 1795 749 307 206 211 10 chr13 1949771 1949970 -99923199 + Charlie7 DNA MER1_type 2373 2611 -1 2155 119 3 3 chr13 1950360 1950672 -99922497 + AluSq SINE Alu 2 313 0 191 257 0 0 chr13 1951439 1951474 -99921695 + L2 LINE L2 3259 3293 -20 448 208 52 78 chr13 1951621 1951775 -99921394 - L1MC4 LINE L1 -242 7800 7651 2156 82 41 3 chr13 1951793 1952085 -99921084 - AluSp SINE Alu -10 303 1 311 250 81 32 chr13 1952085 1952209 -99920960 - L1MEc LINE L1 -4956 1586 1457 207 143 0 41 chr13 1952210 1952259 -99920910 + (TATTG)n Simple_repeat Simple_repeat 5 51 0 1847 240 57 111 chr13 1952262 1952542 -99920627 - L1MEc LINE L1 -5202 1623 1329 2445 65 0 0 chr13 1952542 1952836 -99920333 - AluY SINE Alu -17 294 1 1847 240 57 111 chr13 1952836 1953753 -99919416 - L1MEc LINE L1 -5496 1329 491 1321 167 98 0 chr13 1953772 1954059 -99919110 - L1MC4 LINE L1 -422 7620 7306 1060 213 139 18 chr13 1954386 1954781 -99918388 - Charlie4a DNA MER1_type -4 504 62 2224 123 3 0 chr13 1955485 1955794 -99917375 - AluSg SINE Alu 0 310 1 434 139 0 13 chr13 1956963 1957042 -99916127 - FLAM_A SINE Alu -10 132 55 454 163 0 22 chr13 1957093 1957185 -99915984 - AluJ/FLAM SINE Alu -218 94 5 189 0 0 0 chr13 1957204 1957225 -99915944 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1497 129 133 0 chr13 1957233 1957481 -99915688 - MER7A DNA MER2_type -1 345 67 33 25 0 0 chr13 1957605 1957645 -99915524 + AT_rich Low_complexity Low_complexity 1 40 0 542 305 138 27 chr13 1959186 1959520 -99913649 + L3 LINE CR1 1163 1533 -44 1702 179 9 18 chr13 1960103 1960432 -99912737 + MER2 DNA MER2_type 1 326 -19 1480 207 36 25 chr13 1960633 1960991 -99912178 - MLT1A1 LTR MaLR -3 362 1 2035 138 10 0 chr13 1961363 1961654 -99911515 - AluSx SINE Alu -16 296 3 2262 108 0 16 chr13 1961782 1961960 -99911209 - AluSx SINE Alu -2 310 138 2548 57 0 0 chr13 1961960 1962259 -99910910 - AluY SINE Alu -12 299 1 2262 108 0 16 chr13 1962259 1962395 -99910774 - AluSx SINE Alu -174 138 1 28 71 0 0 chr13 1962674 1962730 -99910439 + AT_rich Low_complexity Low_complexity 1 56 0 2195 112 13 0 chr13 1963427 1963732 -99909437 - AluSx SINE Alu -3 309 1 2470 87 0 0 chr13 1964161 1964470 -99908699 - AluSx SINE Alu -3 309 1 21 36 0 0 chr13 1967427 1967455 -99905714 + AT_rich Low_complexity Low_complexity 1 28 0 2258 93 20 3 chr13 1968775 1969076 -99904093 - AluSx SINE Alu -6 306 1 365 97 81 0 chr13 1969309 1969371 -99903798 - L1PA13 LINE L1 -8 6806 6740 2715 108 35 0 chr13 1969418 1969824 -99903345 - L1PA13 LINE L1 -60 6754 6335 18824 188 39 17 chr13 1969824 1971035 -99902134 - L1PA13 LINE L1 -967 5830 4647 2241 96 0 10 chr13 1971035 1971337 -99901832 - AluY SINE Alu -12 299 1 18824 188 39 17 chr13 1971337 1974286 -99898883 - L1PA13 LINE L1 -2150 4647 1506 2025 157 0 0 chr13 1974286 1974585 -99898584 - AluSx SINE Alu -13 299 1 18824 188 39 17 chr13 1974585 1976125 -99897044 - L1PA13 LINE L1 -5291 1506 1 2417 88 0 0 chr13 1976329 1976634 -99896535 + AluSx SINE Alu 1 305 -7 25 51 0 0 chr13 1977372 1977411 -99895758 + AT_rich Low_complexity Low_complexity 1 39 0 1744 161 20 33 chr13 1977521 1977825 -99895344 + AluJo SINE Alu 1 300 -12 1612 203 0 23 chr13 1977828 1978129 -99895040 + AluJo SINE Alu 3 296 -16 243 0 0 0 chr13 1978145 1978172 -99894997 + (TG)n Simple_repeat Simple_repeat 2 28 0 333 250 71 0 chr13 1978172 1978256 -99894913 + L1MC4 LINE L1 6614 6703 -1339 320 298 21 0 chr13 1978188 1978282 -99894887 - L1MC4 LINE L1 -1339 6703 6608 * 31 58 0 0 chr13 1979851 1979903 -99893266 + AT_rich Low_complexity Low_complexity 1 52 0 210 304 43 0 chr13 1980236 1980305 -99892864 + L3 LINE CR1 1459 1530 -47 292 258 250 23 chr13 1981205 1981333 -99891836 + MIR SINE MIR 44 200 -62 24 32 0 0 chr13 1982464 1982495 -99890674 + AT_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr13 1983548 1983601 -99889568 + AT_rich Low_complexity Low_complexity 1 53 0 344 261 11 22 chr13 1984837 1984929 -99888240 - MER5B DNA MER1_type -1 177 87 2142 88 34 10 chr13 1984941 1985236 -99887933 + AluSq SINE Alu 1 302 -11 417 244 0 0 chr13 1985745 1985835 -99887334 + MIR SINE MIR 78 167 -95 552 321 74 4 chr13 1985884 1986127 -99887042 + MIR SINE MIR 2 261 -1 337 179 90 13 chr13 1986414 1986492 -99886677 - MIR SINE MIR -110 152 69 658 194 61 92 chr13 1986501 1986697 -99886472 - MER8 DNA MER2_type -1 238 49 2233 177 40 38 chr13 1986775 1987228 -99885941 - MER82 DNA MER2_type 0 653 200 294 314 65 54 chr13 1987806 1988083 -99885086 + Tigger2 DNA MER2_type 1411 1690 -1028 1827 155 34 0 chr13 1988658 1988832 -99884337 - AluSx SINE Alu -5 307 117 249 109 0 0 chr13 1988832 1988878 -99884291 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1827 155 34 0 chr13 1988878 1989000 -99884169 - AluSx SINE Alu -195 117 1 653 218 56 0 chr13 1989284 1989426 -99883743 - MER82 DNA MER2_type -492 161 12 342 113 25 125 chr13 1991190 1991270 -99881899 + Tigger2 DNA MER2_type 1 72 -2646 253 222 111 0 chr13 1991273 1991327 -99881842 - MER2 DNA MER2_type -4 341 282 * 473 172 192 86 chr13 1991306 1991336 -99881833 - MER8 DNA MER2_type -64 175 150 1823 160 7 0 chr13 1991336 1991617 -99881552 + AluJb SINE Alu 21 303 -9 473 172 192 86 chr13 1991617 1991737 -99881432 - MER8 DNA MER2_type -89 150 9 2289 100 3 0 chr13 1991959 1992259 -99880910 + AluSq SINE Alu 1 301 -12 183 42 0 0 chr13 1993144 1993168 -99880001 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1826 153 22 0 chr13 1993170 1993445 -99879724 - AluSx SINE Alu -31 281 1 368 191 112 79 chr13 1993713 1993865 -99879304 - MER112 DNA MER1_type -6 254 98 1894 109 0 0 chr13 1994741 1994989 -99878180 + AluJb SINE Alu 59 306 -6 2242 95 11 0 chr13 1995063 1995347 -99877822 + AluSq SINE Alu 3 289 -24 426 92 63 29 chr13 1995347 1995521 -99877648 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 71 0 0 chr13 1996219 1996261 -99876908 + AT_rich Low_complexity Low_complexity 1 42 0 207 281 16 16 chr13 1996261 1996382 -99876787 + (TTA)n Simple_repeat Simple_repeat 2 122 0 1136 191 12 16 chr13 1996821 1997077 -99876092 + L1M4 LINE L1 4947 5201 -945 1318 122 141 53 chr13 1997079 1997342 -99875827 + AluJo SINE Alu 1 286 -26 286 83 0 0 chr13 1997358 1997394 -99875775 + U1 snRNA snRNA 1 36 -129 * 316 166 0 11 chr13 1997375 1997447 -99875722 + Alu SINE Alu 248 300 -2 586 190 17 17 chr13 1997803 1997919 -99875250 - Tigger2 DNA MER2_type 0 2718 2603 * 1939 113 88 105 chr13 1997914 1998322 -99874847 - Tigger2 DNA MER2_type -39 2679 1 24 53 0 0 chr13 1998762 1998800 -99874369 + AT_rich Low_complexity Low_complexity 1 38 0 518 264 64 90 chr13 1999848 2000159 -99873010 + MER46C DNA MER2_type 34 336 -2 1232 228 60 116 chr13 2000658 2001346 -99871823 - L1MDa LINE L1 -1814 4401 3753 2198 89 10 3 chr13 2002079 2002372 -99870797 - AluSc SINE Alu -14 295 1 941 94 106 12 chr13 2002662 2002822 -99870347 - AluSg/x SINE Alu -21 291 117 3222 125 60 2 chr13 2002838 2003393 -99869776 - MER51C LTR ERV1 0 640 1 889 212 38 128 chr13 2003747 2003801 -99869368 - L1MDa LINE L1 -2467 3748 3691 2214 113 0 3 chr13 2003801 2004102 -99869067 + AluSq SINE Alu 1 300 -13 889 212 38 128 chr13 2004102 2004438 -99868731 - L1MDa LINE L1 -2524 3691 3393 2112 141 3 6 chr13 2004458 2004771 -99868398 - AluSx SINE Alu 0 312 1 517 178 10 10 chr13 2004798 2004899 -99868270 - MER58 DNA MER1_type 0 2420 2320 470 202 148 5 chr13 2005041 2005244 -99867925 - L1MDa LINE L1 -2982 3233 3002 21 36 0 0 chr13 2005285 2005313 -99867856 + AT_rich Low_complexity Low_complexity 1 28 0 2136 137 3 8 chr13 2005403 2005760 -99867409 - L1MB3 LINE L1 -3 6180 5826 378 0 0 0 chr13 2005760 2005802 -99867367 + (TG)n Simple_repeat Simple_repeat 1 42 0 1613 181 0 17 chr13 2005813 2006100 -99867069 - AluJb SINE Alu -30 282 1 2518 51 0 0 chr13 2006107 2006401 -99866768 - AluY SINE Alu -17 294 1 319 164 30 0 chr13 2006463 2006530 -99866639 + L1MB2 LINE L1 6096 6164 -7 1724 122 17 51 chr13 2007234 2007530 -99865639 - AluSx SINE Alu -5 307 22 2186 50 90 7 chr13 2007727 2008006 -99865163 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 2008139 2008161 -99865008 + AT_rich Low_complexity Low_complexity 1 22 0 536 210 206 0 chr13 2008555 2008788 -99864381 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 2008891 2008914 -99864255 + AT_rich Low_complexity Low_complexity 1 23 0 2462 79 3 0 chr13 2008926 2009231 -99863938 + AluSc SINE Alu 1 306 -3 365 203 26 123 chr13 2010239 2010378 -99862791 - L1MDa LINE L1 -3828 2387 2264 1913 143 7 7 chr13 2010378 2010672 -99862497 - AluJb SINE Alu -14 298 5 365 203 26 123 chr13 2010672 2010708 -99862461 - L1MDa LINE L1 -3951 2264 2226 303 253 55 22 chr13 2010769 2010860 -99862309 - MER58 DNA MER1_type -2151 269 176 232 250 19 0 chr13 2010857 2010909 -99862260 - MER58 DNA MER1_type -158 57 5 * 956 215 105 12 chr13 2010920 2011245 -99861924 - L1MDa LINE L1 -4139 2257 1903 21 36 0 0 chr13 2012622 2012650 -99860519 + AT_rich Low_complexity Low_complexity 1 28 0 2325 90 3 10 chr13 2012937 2013247 -99859922 - AluSp SINE Alu -5 308 1 1853 154 0 10 chr13 2013903 2014195 -99858974 - AluJo SINE Alu -20 292 4 713 226 53 11 chr13 2014236 2014426 -99858743 - MER58A DNA MER1_type 0 224 27 1518 142 63 79 chr13 2014789 2015156 -99858013 - MER46B DNA MER2_type 0 236 1 428 204 76 52 chr13 2015335 2015507 -99857662 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 2016114 2016135 -99857034 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 2016380 2016417 -99856752 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 2016608 2016690 -99856479 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 2020503 2020632 -99852537 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 2020706 2020785 -99852384 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 2021106 2021220 -99851949 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 2021584 2021662 -99851507 + L2 LINE L2 3231 3309 -4 190 333 38 38 chr13 2021920 2022025 -99851144 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 2022517 2022664 -99850505 - MIR SINE MIR -88 174 6 7383 199 104 56 chr13 2022989 2023306 -99849863 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 2023306 2023378 -99849791 + Alu SINE Alu 1 72 -237 7383 199 104 56 chr13 2023378 2025298 -99847871 - Cheshire DNA MER1_type -300 2120 2 2147 120 0 0 chr13 2025346 2025646 -99847523 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 2025657 2025717 -99847452 + L2 LINE L2 1411 1472 -1842 320 282 137 0 chr13 2025717 2025834 -99847335 + L2 LINE L2 1646 1778 -1536 285 307 123 9 chr13 2027266 2027380 -99845789 + L2 LINE L2 3145 3271 -1 379 345 103 5 chr13 2028419 2028613 -99844556 + MIR SINE MIR 34 246 -16 201 74 0 0 chr13 2028684 2028711 -99844458 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 1531 219 41 24 chr13 2028860 2029253 -99843916 - MSTD LTR MaLR -2 394 3 366 23 0 0 chr13 2029786 2029829 -99843340 + (CA)n Simple_repeat Simple_repeat 2 44 0 28 0 0 0 chr13 2030063 2030091 -99843078 + AT_rich Low_complexity Low_complexity 1 28 0 867 112 0 14 chr13 2030716 2030859 -99842310 - L1MB3 LINE L1 -217 5966 5826 414 0 0 0 chr13 2030859 2030905 -99842264 + (TG)n Simple_repeat Simple_repeat 1 46 0 1611 181 0 17 chr13 2030920 2031207 -99841962 - AluJb SINE Alu -30 282 1 2514 51 0 0 chr13 2031214 2031508 -99841661 - AluY SINE Alu -17 294 1 312 164 30 0 chr13 2031570 2031637 -99841532 + L1MB2 LINE L1 6096 6164 -7 1944 110 22 54 chr13 2032344 2032661 -99840508 - AluSx SINE Alu 0 312 6 1654 114 30 11 chr13 2033496 2033760 -99839409 - AluSx SINE Alu -1 311 43 372 255 235 0 chr13 2033900 2034053 -99839116 - MIR SINE MIR -2 260 72 2182 54 90 7 chr13 2034510 2034789 -99838380 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 2034922 2034944 -99838225 + AT_rich Low_complexity Low_complexity 1 22 0 478 210 206 0 chr13 2035338 2035571 -99837598 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 2035674 2035697 -99837472 + AT_rich Low_complexity Low_complexity 1 23 0 2488 79 3 0 chr13 2035709 2036014 -99837155 + AluSc SINE Alu 1 306 -3 335 246 43 29 chr13 2037023 2037161 -99836008 - L1MEc LINE L1 -3828 2387 2248 1925 143 7 7 chr13 2037162 2037456 -99835713 - AluJb SINE Alu -14 298 5 276 253 63 0 chr13 2037565 2037644 -99835525 - MER58 DNA MER1_type -2161 259 176 875 215 105 12 chr13 2037704 2038029 -99835140 - L1MEc LINE L1 -4139 2257 1903 21 36 0 0 chr13 2039407 2039435 -99833734 + AT_rich Low_complexity Low_complexity 1 28 0 2344 90 3 10 chr13 2039722 2040032 -99833137 - AluSp SINE Alu -5 308 1 1853 154 0 10 chr13 2040688 2040980 -99832189 - AluJo SINE Alu -20 292 4 641 216 58 16 chr13 2041021 2041211 -99831958 - MER58A DNA MER1_type 0 224 27 1518 142 63 79 chr13 2041574 2041941 -99831228 - MER46B DNA MER2_type 0 236 1 423 204 76 52 chr13 2042120 2042292 -99830877 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 2042899 2042920 -99830249 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 2043165 2043202 -99829967 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 2043393 2043475 -99829694 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 2047287 2047416 -99825753 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 2047490 2047569 -99825600 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 2047890 2048004 -99825165 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 2048364 2048442 -99824727 + L2 LINE L2 3231 3309 -4 202 324 38 38 chr13 2048700 2048805 -99824364 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 2049297 2049444 -99823725 - MIR SINE MIR -88 174 6 7366 199 104 56 chr13 2049769 2050086 -99823083 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 2050086 2050158 -99823011 + Alu SINE Alu 1 72 -238 7366 199 104 56 chr13 2050158 2052078 -99821091 - Cheshire DNA MER1_type -300 2120 2 2134 120 0 0 chr13 2052126 2052426 -99820743 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 2052437 2052497 -99820672 + L2 LINE L2 1411 1472 -1842 1310 271 127 28 chr13 2052497 2052742 -99820427 + L2 LINE L2 1646 1865 -1449 1817 137 48 17 chr13 2052742 2053035 -99820134 - AluJb SINE Alu -10 302 1 1310 271 127 28 chr13 2053035 2053324 -99819845 + L2 LINE L2 1865 2233 -1081 215 176 98 0 chr13 2053384 2053435 -99819734 - MIR SINE MIR -44 218 163 257 217 17 0 chr13 2053436 2053496 -99819673 - MER58A DNA MER1_type 0 224 164 2853 103 55 118 chr13 2053502 2053824 -99819345 - LTR12 LTR ERV1 -132 582 316 189 0 0 0 chr13 2053824 2053845 -99819324 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 2853 103 55 118 chr13 2053845 2054143 -99819026 - LTR12 LTR ERV1 -398 316 1 603 166 50 22 chr13 2054150 2054289 -99818880 - MER58C DNA MER1_type -72 143 1 576 216 65 7 chr13 2054312 2054451 -99818718 - MIR SINE MIR -108 154 8 2351 256 152 42 chr13 2054504 2055896 -99817273 + HAL1 LINE L1 249 1794 -713 719 189 18 6 chr13 2055940 2056104 -99817065 + LTR41 LTR ERVL 5 170 -603 479 204 53 29 chr13 2056265 2056472 -99816697 + LTR41 LTR ERVL 566 795 0 296 252 60 66 chr13 2056472 2056790 -99816379 + HAL1 LINE L1 2135 2450 -57 572 111 0 11 chr13 2056806 2056896 -99816273 - Tigger7 DNA MER2_type -7 2484 2396 * 806 222 5 25 chr13 2056894 2057097 -99816072 - Tigger7 DNA MER2_type -466 267 69 2651 139 19 24 chr13 2057185 2057413 -99815756 + L1MB3 LINE L1 5710 5937 -246 2040 137 0 0 chr13 2057413 2057713 -99815456 + AluSx SINE Alu 1 300 -12 2651 139 19 24 chr13 2057713 2057950 -99815219 + L1MB3 LINE L1 5937 6173 -10 25 0 0 0 chr13 2058095 2058120 -99815049 + AT_rich Low_complexity Low_complexity 1 25 0 216 254 175 35 chr13 2058266 2058380 -99814789 - L2 LINE L2 -5 3267 3138 943 176 77 31 chr13 2058883 2059105 -99814064 - MSTD LTR MaLR 0 396 165 1863 142 4 0 chr13 2059933 2060200 -99812969 - AluSx SINE Alu -44 268 1 21 36 0 0 chr13 2060433 2060461 -99812708 + AT_rich Low_complexity Low_complexity 1 28 0 1651 138 28 28 chr13 2060574 2060857 -99812312 - AluJo SINE Alu -29 283 1 233 224 0 0 chr13 2062690 2062739 -99810430 - L3 LINE CR1 -1 1576 1528 565 285 18 35 chr13 2062748 2062817 -99810352 + MER58A DNA MER1_type 1 70 -2350 2317 101 0 0 chr13 2062817 2063114 -99810055 + AluSx SINE Alu 1 297 -15 565 285 18 35 chr13 2063114 2063272 -99809897 + MER58A DNA MER1_type 70 224 0 991 239 128 32 chr13 2064012 2064467 -99808702 + L1ME4a LINE L1 5510 6007 -114 835 279 69 47 chr13 2064556 2064786 -99808383 - L1MEd LINE L1 -4869 1250 1026 381 22 0 0 chr13 2064786 2064832 -99808337 + (TG)n Simple_repeat Simple_repeat 2 47 0 2197 123 0 3 chr13 2064840 2065141 -99808028 - AluSx SINE Alu -12 300 1 835 279 69 47 chr13 2065141 2065410 -99807759 - L1MEd LINE L1 -5099 1020 731 301 375 125 0 chr13 2065545 2065729 -99807440 - L1MEd LINE L1 -5453 666 460 967 256 60 78 chr13 2065899 2066415 -99806754 + L2 LINE L2 2419 2925 -389 2247 107 0 16 chr13 2066490 2066798 -99806371 - AluSg1 SINE Alu -6 303 1 1885 159 7 13 chr13 2066801 2067102 -99806067 - AluJo SINE Alu -7 305 7 1200 251 176 12 chr13 2067178 2067356 -99805813 + L1ME1 LINE L1 5516 5663 -503 973 266 131 38 chr13 2067356 2067829 -99805340 + MLT2B1 LTR ERVL 1 517 -3 1200 251 176 12 chr13 2067829 2068149 -99805020 + L1ME1 LINE L1 5663 6096 -70 234 191 0 0 chr13 2068167 2068214 -99804955 + A-rich Low_complexity Low_complexity 1 47 0 899 172 35 7 chr13 2068219 2068448 -99804721 + AluJb SINE Alu 1 302 -10 1770 147 25 3 chr13 2068449 2068769 -99804400 + AluJb SINE Alu 1 312 0 201 39 0 0 chr13 2068850 2068876 -99804293 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 225 337 69 20 chr13 2069020 2069121 -99804048 - MIR SINE MIR -55 153 48 216 0 0 0 chr13 2069133 2069157 -99804012 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2277 113 0 0 chr13 2069159 2069452 -99803717 - AluSq SINE Alu -20 293 1 252 333 11 0 chr13 2069598 2069685 -99803484 - MIR SINE MIR -117 145 58 254 319 80 35 chr13 2069723 2069836 -99803333 - MIR SINE MIR -55 207 90 236 245 0 0 chr13 2069944 2069993 -99803176 + GA-rich Low_complexity Low_complexity 2 50 0 743 152 49 98 chr13 2070352 2070556 -99802613 + MLT1D LTR MaLR 1 194 -311 446 262 0 0 chr13 2070578 2070681 -99802488 + MLT1D LTR MaLR 387 489 -16 329 220 200 0 chr13 2070965 2071065 -99802104 - MER69 DNA AcHobo -2 2524 2405 350 241 86 0 chr13 2071162 2071278 -99801891 - MER69 DNA AcHobo -2383 143 18 2222 116 0 28 chr13 2071374 2071694 -99801475 + AluSx SINE Alu 1 311 -1 304 190 0 35 chr13 2071701 2071759 -99801410 - L1MC4 LINE L1 -1339 6703 6648 2343 116 0 0 chr13 2072056 2072366 -99800803 - AluSx SINE Alu -2 310 1 1336 173 110 18 chr13 2072485 2072757 -99800412 + AluSg SINE Alu 12 308 -2 917 204 0 17 chr13 2073198 2073374 -99799795 - FRAM SINE Alu -11 165 1 24 53 0 0 chr13 2073487 2073525 -99799644 + AT_rich Low_complexity Low_complexity 1 38 0 1449 158 39 56 chr13 2073963 2074075 -99799094 + AluJb SINE Alu 15 127 -185 197 0 71 0 chr13 2074075 2074103 -99799066 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 1449 158 39 56 chr13 2074103 2074274 -99798895 + AluJb SINE Alu 127 293 -19 2130 89 0 71 chr13 2074477 2074802 -99798367 - AluSx SINE Alu -10 302 1 222 297 22 66 chr13 2075531 2075713 -99797456 + C-rich Low_complexity Low_complexity 1 174 0 773 165 41 47 chr13 2076093 2076242 -99796927 + AluJb SINE Alu 137 286 -26 387 0 0 0 chr13 2076242 2076285 -99796884 + (CA)n Simple_repeat Simple_repeat 2 44 0 773 165 41 47 chr13 2076285 2076305 -99796864 + AluJb SINE Alu 286 305 -7 434 264 110 28 chr13 2076472 2076654 -99796515 + L2 LINE L2 3117 3313 0 313 233 56 33 chr13 2076665 2076755 -99796414 + MIR SINE MIR 58 149 -113 1071 153 98 31 chr13 2076756 2077011 -99796158 + LTR54B LTR ERV1 1 272 -226 3323 82 68 78 chr13 2077012 2077522 -99795647 - MER51A LTR ERV1 -8 626 122 2420 88 0 0 chr13 2077522 2077829 -99795340 - AluSq SINE Alu -6 307 1 3323 82 68 78 chr13 2077829 2077950 -99795219 - MER51A LTR ERV1 -512 122 1 605 248 59 5 chr13 2077952 2078154 -99795015 + LTR54B LTR ERV1 281 493 -5 525 238 63 7 chr13 2078325 2078468 -99794701 - MER21B LTR ERV1 -615 248 98 507 221 9 38 chr13 2078443 2078602 -99794567 - MER21B LTR ERV1 -410 195 12 * 820 161 19 6 chr13 2078607 2078769 -99794400 - L1M3 LINE L1 -714 5466 5303 1115 70 0 0 chr13 2078775 2078904 -99794265 + AluSq/x SINE Alu 7 135 -178 2190 123 0 7 chr13 2078904 2079214 -99793955 + AluSc SINE Alu 1 308 -1 1466 206 79 21 chr13 2079246 2079556 -99793613 - L1 LINE L1 -833 5313 4987 2009 107 68 0 chr13 2079556 2079836 -99793333 - AluSx SINE Alu -13 299 1 1466 206 79 21 chr13 2079836 2079963 -99793206 - L1 LINE L1 -1159 4987 4869 258 217 67 0 chr13 2079963 2080023 -99793146 + L2 LINE L2 3238 3301 -12 196 337 63 21 chr13 2080053 2080148 -99793021 + MIR3 SINE MIR 110 208 0 2066 98 19 63 chr13 2080483 2080799 -99792370 - AluSx SINE Alu -10 302 1 539 278 60 56 chr13 2081112 2081346 -99791823 - L2 LINE L2 0 3313 3079 2323 112 3 3 chr13 2081369 2081681 -99791488 + AluSx SINE Alu 1 312 0 186 133 0 0 chr13 2081743 2081773 -99791396 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 249 220 0 0 chr13 2081773 2081823 -99791346 - L2 LINE L2 0 3313 3264 540 265 177 32 chr13 2082158 2082407 -99790762 + L3 LINE CR1 621 905 -672 183 217 43 0 chr13 2082478 2082524 -99790645 + L3 LINE CR1 902 949 -628 680 225 174 34 chr13 2082569 2082862 -99790307 + L1MC4a LINE L1 7062 7395 -413 2057 105 0 44 chr13 2082980 2083298 -99789871 - AluSx SINE Alu 0 305 1 293 222 16 0 chr13 2083298 2083361 -99789808 + MER5A DNA MER1_type 123 186 -3 1586 145 47 34 chr13 2083939 2084235 -99788934 - AluJo SINE Alu 0 312 13 21 57 0 0 chr13 2084837 2084872 -99788297 + GC_rich Low_complexity Low_complexity 1 35 0 510 264 25 12 chr13 2085219 2085382 -99787787 + MLT1D LTR MaLR 32 196 -309 312 337 10 10 chr13 2085800 2085898 -99787271 - L1ME1 LINE L1 -5 6161 6064 2435 49 0 3 chr13 2086026 2086340 -99786829 + AluSg SINE Alu 1 313 0 291 177 0 0 chr13 2086465 2086527 -99786642 + (CA)n Simple_repeat Simple_repeat 2 63 0 455 251 8 0 chr13 2086539 2086811 -99786358 + (CA)n Simple_repeat Simple_repeat 1 274 0 219 212 0 0 chr13 2086844 2086929 -99786240 + (CA)n Simple_repeat Simple_repeat 2 86 0 530 199 0 11 chr13 2086958 2086976 -99786193 + (CA)n Simple_repeat Simple_repeat 2 19 -161 2132 121 47 44 chr13 2086976 2087339 -99785830 - THE1B LTR MaLR 0 364 1 530 199 0 11 chr13 2087339 2087501 -99785668 + (CA)n Simple_repeat Simple_repeat 19 180 0 501 228 0 0 chr13 2087528 2087695 -99785474 + (CA)n Simple_repeat Simple_repeat 2 168 0 198 0 0 0 chr13 2088499 2088521 -99784648 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 195 260 65 26 chr13 2088522 2088599 -99784570 - L2 LINE L2 -14 3299 3220 1316 127 23 0 chr13 2088753 2088973 -99784196 - MER50 LTR ERV1 -503 231 7 28 48 0 0 chr13 2089380 2089422 -99783747 + AT_rich Low_complexity Low_complexity 1 42 0 2180 150 92 20 chr13 2089422 2089881 -99783288 - L1MB3 LINE L1 -2 6181 5690 390 207 117 18 chr13 2090089 2090200 -99782969 - MIR SINE MIR -111 151 30 2187 103 3 3 chr13 2090705 2091024 -99782145 - AluSc SINE Alu 0 309 1 2098 122 3 14 chr13 2091024 2091320 -99781849 - AluJb SINE Alu -19 293 1 21 0 0 0 chr13 2091323 2091344 -99781825 + AT_rich Low_complexity Low_complexity 1 21 0 2289 159 18 0 chr13 2091835 2092225 -99780944 - L1MB3 LINE L1 -3 6180 5784 1431 139 58 95 chr13 2092227 2092382 -99780787 - AluJo SINE Alu -17 295 136 2436 95 0 13 chr13 2092382 2092699 -99780470 - AluSq SINE Alu 0 313 1 2436 75 3 0 chr13 2092704 2092997 -99780172 - AluSq SINE Alu -19 294 1 1431 139 58 95 chr13 2092997 2093023 -99780146 - AluJo SINE Alu -180 132 107 189 0 0 0 chr13 2093023 2093044 -99780125 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1431 139 58 95 chr13 2093044 2093149 -99780020 - AluJo SINE Alu -205 107 13 257 285 179 66 chr13 2093257 2093408 -99779761 - MIR SINE MIR -12 250 83 1180 130 4 100 chr13 2093852 2094091 -99779078 - AluJo SINE Alu -17 295 80 442 147 54 116 chr13 2096701 2096830 -99776339 + MER105 DNA DNA 29 149 -55 225 260 0 0 chr13 2099603 2099653 -99773516 + CT-rich Low_complexity Low_complexity 4 53 0 449 207 82 67 chr13 2100353 2100561 -99772608 + MER113 DNA MER1_type? 7 217 -304 559 245 130 10 chr13 2100670 2100870 -99772299 + MER113 DNA MER1_type? 257 480 -41 2080 131 0 3 chr13 2101568 2101858 -99771311 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr13 2101858 2101883 -99771286 + AT_rich Low_complexity Low_complexity 1 25 0 253 203 31 16 chr13 2103399 2103463 -99769706 + L1ME4a LINE L1 5615 5679 -442 287 302 114 48 chr13 2103656 2104033 -99769136 + MLT1J LTR MaLR 110 511 0 411 235 176 20 chr13 2104075 2104330 -99768839 + L1ME4a LINE L1 5773 6067 -54 2026 153 3 7 chr13 2104920 2105228 -99767941 - AluJo SINE Alu -5 307 1 1665 188 31 0 chr13 2105886 2106174 -99766995 + AluJo SINE Alu 6 302 -10 211 256 0 0 chr13 2106495 2106538 -99766631 + L2 LINE L2 3271 3313 0 261 0 0 0 chr13 2107042 2107071 -99766098 + (TG)n Simple_repeat Simple_repeat 1 29 0 250 265 364 20 chr13 2108289 2108787 -99764382 - L2 LINE L2 -337 2977 2309 1974 143 17 0 chr13 2109062 2109349 -99763820 - AluSx SINE Alu -20 292 1 4091 54 0 0 chr13 2109966 2110464 -99762705 + L1PA5 LINE L1 5656 6153 -1 317 321 55 36 chr13 2110700 2110865 -99762304 - L1M4 LINE L1 -1410 4736 4569 470 267 158 39 chr13 2110980 2111340 -99761829 - L1M4 LINE L1 -1717 4429 4027 1853 166 0 27 chr13 2111528 2111823 -99761346 - AluJo SINE Alu -20 292 6 307 280 155 7 chr13 2112052 2112323 -99760846 - L1M4 LINE L1 -2639 3507 3197 243 0 0 0 chr13 2112970 2112997 -99760172 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 1636 148 32 46 chr13 2112997 2113281 -99759888 - AluSx SINE Alu -32 280 1 432 308 70 29 chr13 2114090 2114262 -99758907 - MIR3 SINE MIR 0 208 30 1424 162 4 29 chr13 2114568 2114809 -99758360 - AluJo SINE Alu -77 235 1 2088 89 26 26 chr13 2115299 2115612 -99757557 + AluSq SINE Alu 1 313 0 263 318 103 32 chr13 2115834 2115960 -99757209 - L2 LINE L2 -15 3257 3123 277 111 0 0 chr13 2116022 2116058 -99757111 + AluY SINE Alu 140 175 -126 794 31 0 0 chr13 2116058 2116156 -99757013 + AluSg/x SINE Alu 212 309 0 237 235 20 29 chr13 2117471 2117573 -99755596 + (CCCCG)n Simple_repeat Simple_repeat 5 105 0 47 33 0 0 chr13 2119270 2119331 -99753838 + AT_rich Low_complexity Low_complexity 1 61 0 2768 143 40 6 chr13 2119334 2119829 -99753340 + L1MB3 LINE L1 5671 6182 -1 183 222 0 0 chr13 2120312 2120348 -99752821 + L2 LINE L2 3271 3306 -7 2165 105 0 10 chr13 2120508 2120822 -99752347 + AluSx SINE Alu 1 311 -1 2316 88 0 19 chr13 2120936 2121254 -99751915 + AluSq SINE Alu 1 312 -1 1513 131 20 81 chr13 2121452 2121790 -99751379 + AluJb SINE Alu 4 323 0 1748 134 76 0 chr13 2122702 2122992 -99750177 + AluJb SINE Alu 1 312 0 283 314 6 45 chr13 2123265 2123421 -99749748 - MIR SINE MIR -44 218 69 1672 171 3 13 chr13 2123915 2124225 -99748944 + AluJo SINE Alu 5 311 -1 198 342 70 44 chr13 2124904 2125062 -99748107 + L2 LINE L2 319 480 -2834 276 283 58 96 chr13 2125278 2125518 -99747651 + L3 LINE CR1 1008 1238 -339 794 208 134 19 chr13 2125525 2125741 -99747428 - MIR SINE MIR -12 250 10 202 321 0 0 chr13 2125741 2125797 -99747372 + (TG)n Simple_repeat Simple_repeat 1 56 0 212 342 49 71 chr13 2125797 2126063 -99747106 + L3 LINE CR1 1274 1533 -44 1531 148 32 0 chr13 2126431 2126681 -99746488 - AluJb SINE Alu -54 258 1 1936 156 47 0 chr13 2126800 2127120 -99746049 + MER7A DNA MER2_type 14 346 0 440 251 106 58 chr13 2127365 2127572 -99745597 + MIR SINE MIR 46 262 0 377 279 62 37 chr13 2128702 2128863 -99744306 - MER104 DNA Tc2 -3 177 13 3101 208 18 15 chr13 2129216 2130163 -99743006 + L1M3 LINE L1 4629 5583 -600 310 239 33 43 chr13 2132425 2132543 -99740626 + MIR SINE MIR 70 187 -68 1654 162 13 33 chr13 2135028 2135330 -99737839 - AluJo SINE Alu -16 296 1 942 167 0 6 chr13 2137287 2137455 -99735714 - AluJb SINE Alu -17 295 129 2952 132 29 2 chr13 2137914 2138391 -99734778 - L1MB3 LINE L1 -19 6164 5675 945 302 143 8 chr13 2139593 2139957 -99733212 + L3 LINE CR1 436 848 -729 287 106 0 0 chr13 2139975 2140022 -99733147 + Alu SINE Alu 253 299 -1 2023 136 0 7 chr13 2140183 2140491 -99732678 - AluSx SINE Alu -6 306 1 356 276 138 45 chr13 2140504 2140772 -99732397 + L1ME4a LINE L1 5826 6118 -3 260 291 90 8 chr13 2141074 2141208 -99731961 + L3 LINE CR1 1177 1321 -256 229 250 171 0 chr13 2141560 2141636 -99731533 + L2 LINE L2 3184 3272 0 241 247 55 103 chr13 2141804 2141950 -99731219 + MIR SINE MIR 76 214 -48 227 241 175 36 chr13 2142278 2142415 -99730754 - MIR SINE MIR -15 247 92 1660 183 7 13 chr13 2142869 2143175 -99729994 - AluJb SINE Alu -8 304 1 1368 169 0 0 chr13 2143534 2143765 -99729404 + AluJb SINE Alu 1 231 -81 22 0 0 0 chr13 2149305 2149327 -99723842 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 2149467 2149490 -99723679 + GC_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr13 2149685 2149718 -99723451 + GC_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 2150423 2150444 -99722725 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 2152885 2152906 -99720263 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 2154134 2154161 -99719008 + (A)n Simple_repeat Simple_repeat 1 27 0 479 214 28 84 chr13 2154339 2154517 -99718652 - MER112 DNA MER1_type -92 168 1 1313 150 127 29 chr13 2155219 2155526 -99717643 - MER44D DNA MER2_type -2 607 1 612 247 66 29 chr13 2155902 2156145 -99717024 - L1MC4a LINE L1 -1850 5958 5707 232 229 52 0 chr13 2156153 2156249 -99716920 + L1MCc LINE L1 19 119 -6304 242 273 27 64 chr13 2156904 2157014 -99716155 + L1MCc LINE L1 1291 1396 -5027 * 3217 237 63 31 chr13 2157002 2157193 -99715976 + L1MCc LINE L1 3044 3227 -3714 1720 140 45 3 chr13 2157193 2157485 -99715684 + AluSx SINE Alu 1 304 -8 3217 237 63 31 chr13 2157485 2158244 -99714925 + L1MCc LINE L1 3227 4048 -2893 1884 193 11 26 chr13 2158244 2158622 -99714547 - MLT1A2 LTR MaLR -2 372 1 3217 237 63 31 chr13 2158622 2158963 -99714206 + L1MCc LINE L1 4048 4377 -2564 764 264 50 4 chr13 2158982 2159208 -99713961 - L1MC4a LINE L1 -2119 5689 5459 2043 87 45 7 chr13 2159702 2159990 -99713179 - AluSx SINE Alu -13 299 1 326 253 71 82 chr13 2160068 2160238 -99712931 + L1MEd LINE L1 3 170 -5949 21 0 0 0 chr13 2161276 2161297 -99711872 + AT_rich Low_complexity Low_complexity 1 21 0 1831 134 26 10 chr13 2161859 2162166 -99711003 + AluSx SINE Alu 1 312 0 216 0 0 0 chr13 2162270 2162294 -99710875 + (CA)n Simple_repeat Simple_repeat 2 25 0 386 295 77 0 chr13 2162721 2162877 -99710292 - L1MC/D LINE L1 -2053 5755 5588 219 266 94 0 chr13 2163169 2163233 -99709936 + MIR SINE MIR 76 145 -63 2993 37 0 3 chr13 2163773 2164127 -99709042 + L1PA3 LINE L1 5803 6155 0 480 275 38 25 chr13 2164570 2164730 -99708439 + MER5A DNA MER1_type 27 188 -1 2174 105 0 3 chr13 2164782 2165068 -99708101 + AluSq SINE Alu 1 285 -28 311 68 17 17 chr13 2165068 2165127 -99708042 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 296 170 0 19 chr13 2165145 2165167 -99708002 + AluSg/x SINE Alu 113 133 -167 2551 71 0 0 chr13 2165167 2165475 -99707694 + AluY SINE Alu 1 308 -3 1728 157 111 12 chr13 2165587 2165919 -99707250 + MLT1A1 LTR MaLR 1 365 0 192 231 125 38 chr13 2167146 2167306 -99705863 - L2 LINE L2 -209 3063 2890 6643 187 149 30 chr13 2167465 2167545 -99705624 + L1MDa LINE L1 276 345 -6195 2305 79 3 3 chr13 2167545 2167837 -99705332 + AluSc SINE Alu 1 292 -17 6643 187 149 30 chr13 2167837 2168446 -99704723 + L1MDa LINE L1 345 880 -5660 2136 125 0 13 chr13 2168446 2168757 -99704412 - AluSq SINE Alu -6 307 1 6643 187 149 30 chr13 2168757 2169440 -99703729 + L1MDa LINE L1 880 1480 -5060 1480 152 4 61 chr13 2169440 2169703 -99703466 + AluSx SINE Alu 1 248 -64 6643 187 149 30 chr13 2169703 2170020 -99703149 + L1MDa LINE L1 1480 2168 -4372 3214 179 23 77 chr13 2170255 2170469 -99702700 - MLT-int LTR MaLR -1001 734 510 2389 66 0 3 chr13 2170469 2170757 -99702412 - AluY SINE Alu -15 296 10 3214 179 23 77 chr13 2170757 2171313 -99701856 - MLT-int LTR MaLR -1225 510 5 1550 204 163 12 chr13 2171329 2171805 -99701364 - L1MC3 LINE L1 -373 7412 6856 189 0 0 0 chr13 2171805 2171826 -99701343 + (TG)n Simple_repeat Simple_repeat 2 22 0 1550 204 163 12 chr13 2171826 2171920 -99701249 - L1MC3 LINE L1 -929 6856 6778 284 290 14 69 chr13 2171953 2172098 -99701071 + L2 LINE L2 3136 3272 0 1415 182 62 3 chr13 2173721 2174045 -99699124 - MLT2D LTR ERVL -52 362 20 207 0 0 0 chr13 2174678 2174701 -99698468 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1885 231 2 23 chr13 2176620 2177091 -99696078 + L1M4 LINE L1 4867 5327 -819 22602 54 13 3 chr13 2177093 2179884 -99693285 + L1P LINE L1 4 2823 -3323 1898 148 7 10 chr13 2183145 2183455 -99689714 - AluJb SINE Alu -3 309 1 341 246 26 18 chr13 2183789 2183903 -99689266 - L1MEc LINE L1 -3108 3107 2993 57 28 0 0 chr13 2183908 2183979 -99689190 + AT_rich Low_complexity Low_complexity 1 71 0 2696 247 31 67 chr13 2183984 2184387 -99688782 - L1MEc LINE L1 -3216 2999 2583 1834 146 34 10 chr13 2184387 2184681 -99688488 - AluSx SINE Alu -3 309 9 2696 247 31 67 chr13 2184681 2185273 -99687896 - L1MEc LINE L1 -3632 2583 1971 785 122 257 0 chr13 2185273 2185393 -99687776 - MER5A DNA MER1_type -1 188 100 234 0 0 0 chr13 2185393 2185419 -99687750 + (CTG)n Simple_repeat Simple_repeat 1 26 0 785 122 257 0 chr13 2185419 2185446 -99687723 - MER5A DNA MER1_type -89 100 3 2696 247 31 67 chr13 2185446 2185475 -99687694 - L1MEc LINE L1 -4244 1971 1942 2204 121 0 9 chr13 2185475 2185790 -99687379 - AluSx SINE Alu 0 312 1 2696 247 31 67 chr13 2185790 2186156 -99687013 - L1MEc LINE L1 -4273 1942 1726 2302 97 0 0 chr13 2186156 2186444 -99686725 - AluSx SINE Alu -24 288 1 2696 247 31 67 chr13 2186444 2186591 -99686578 - L1MEc LINE L1 -4489 1726 1575 2360 161 50 10 chr13 2186983 2187387 -99685782 - MSTB LTR MaLR -4 422 3 289 317 49 0 chr13 2189012 2189135 -99684034 - MIR SINE MIR -74 188 60 1627 157 0 8 chr13 2189277 2189532 -99683637 + AluSx SINE Alu 1 253 -59 1290 138 0 0 chr13 2190072 2190261 -99682908 - AluSg/x SINE Alu -4 306 118 2131 125 0 0 chr13 2190271 2190559 -99682610 - AluSx SINE Alu -22 290 3 527 221 137 16 chr13 2191892 2192082 -99681087 - MLT1H1 LTR MaLR 0 555 343 233 267 67 44 chr13 2192417 2192507 -99680662 - MIR SINE MIR -90 118 27 374 293 0 45 chr13 2192531 2192664 -99680505 - MARNA DNA Mariner -227 359 233 1424 158 120 19 chr13 2193277 2193288 -99679881 - AluJo SINE Alu -9 293 285 194 0 39 0 chr13 2193288 2193314 -99679855 + (GA)n Simple_repeat Simple_repeat 1 27 0 1424 158 120 19 chr13 2193314 2193568 -99679601 - AluJo SINE Alu -17 285 1 182 36 0 36 chr13 2193624 2193652 -99679517 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 5681 147 30 13 chr13 2193878 2194669 -99678500 - L1MA4 LINE L1 -1 6299 5487 2498 60 3 0 chr13 2194669 2194968 -99678201 - AluY SINE Alu -11 300 1 5681 147 30 13 chr13 2194968 2195153 -99678016 - L1MA4 LINE L1 -813 5487 5307 330 320 10 0 chr13 2195297 2195394 -99677775 - L2 LINE L2 0 3272 3175 2389 97 3 0 chr13 2196140 2196451 -99676718 - AluSq SINE Alu -1 312 1 226 203 54 27 chr13 2196643 2196717 -99676452 - MIR SINE MIR -103 159 84 29 0 0 0 chr13 2196720 2196749 -99676420 + AT_rich Low_complexity Low_complexity 1 29 0 1032 104 8 0 chr13 2196749 2196883 -99676286 - AluJo SINE Alu -177 135 1 2377 99 3 0 chr13 2197249 2197561 -99675608 + AluSp SINE Alu 1 313 0 1047 262 52 56 chr13 2197630 2198134 -99675035 - HAL1 LINE L1 -4 2503 2002 414 276 99 17 chr13 2198300 2198481 -99674688 - HAL1 LINE L1 -702 1805 1610 261 321 114 15 chr13 2198479 2198610 -99674559 - HAL1 LINE L1 -2336 171 28 * 209 220 0 0 chr13 2198743 2198793 -99674376 - MIR SINE MIR -74 134 85 1164 169 14 119 chr13 2198925 2199203 -99673966 + MSTD LTR MaLR 148 396 0 2121 95 3 7 chr13 2199937 2200263 -99672906 + AluSx SINE Alu 6 312 0 2639 204 73 8 chr13 2201311 2202286 -99670883 + L1MD1 LINE L1 2078 3126 -3414 2158 201 31 53 chr13 2202308 2202854 -99670315 - MER74A LTR ERVL -24 534 1 1836 215 47 32 chr13 2202854 2206193 -99666976 + L1MD1 LINE L1 3126 6636 0 491 219 83 49 chr13 2206231 2206436 -99666733 + L1MC5 LINE L1 7655 7866 -95 317 266 65 32 chr13 2206479 2206603 -99666566 + MIR SINE MIR 2 129 -133 566 61 24 0 chr13 2206606 2206688 -99666481 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 2390 94 3 0 chr13 2206699 2207007 -99666162 - AluSx SINE Alu -3 309 1 302 213 150 0 chr13 2207009 2207089 -99666080 + MIR SINE MIR 101 192 -70 1254 222 20 33 chr13 2207257 2207563 -99665606 - AluJo SINE Alu -10 302 1 1631 173 19 25 chr13 2207859 2208177 -99664992 - L1MA10 LINE L1 -593 5741 5426 2848 178 21 22 chr13 2208177 2208756 -99664413 + L1MA10 LINE L1 5755 6333 -1 2261 128 0 0 chr13 2208935 2209247 -99663922 + AluSx SINE Alu 1 312 0 2334 77 0 13 chr13 2211733 2212031 -99661138 + AluY SINE Alu 1 294 -17 2278 174 31 2 chr13 2213215 2213635 -99659534 - L1MB2 LINE L1 -150 6021 5590 2514 68 0 3 chr13 2216523 2216833 -99656336 - AluY SINE Alu -2 309 1 243 0 0 0 chr13 2217173 2217200 -99655969 + (A)n Simple_repeat Simple_repeat 1 27 0 1715 141 40 59 chr13 2217200 2217504 -99655665 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 2217844 2217865 -99655304 + GC_rich Low_complexity Low_complexity 1 21 0 1174 233 4 0 chr13 2219916 2220174 -99652995 + MER82 DNA MER2_type 54 312 -341 375 272 123 73 chr13 2220179 2220253 -99652916 + L1M4 LINE L1 4584 4653 -1493 1654 153 62 7 chr13 2220253 2220413 -99652756 + L1MA9 LINE L1 5987 6137 -175 387 0 0 0 chr13 2220413 2220456 -99652713 + (CA)n Simple_repeat Simple_repeat 2 44 0 1654 153 62 7 chr13 2220456 2220603 -99652566 + L1MA9 LINE L1 6137 6311 -1 375 272 123 73 chr13 2220603 2221082 -99652087 + L1M4 LINE L1 4653 5176 -970 2536 65 0 7 chr13 2221082 2221390 -99651779 + AluY SINE Alu 1 306 -5 375 272 123 73 chr13 2221390 2221475 -99651694 + L1M4 LINE L1 5176 5255 -891 1085 151 17 6 chr13 2221480 2221652 -99651517 + AluSg/x SINE Alu 137 310 -2 800 180 9 104 chr13 2221727 2221938 -99651231 - MLT1B LTR MaLR -197 193 3 1493 161 31 93 chr13 2221957 2222188 -99650981 - MLT1B-int LTR MaLR -17 1718 1511 2730 185 4 0 chr13 2222188 2222669 -99650500 + L1PB4 LINE L1 5669 6151 -5 1493 161 31 93 chr13 2222669 2222761 -99650408 - MLT1B-int LTR MaLR -224 1511 1415 2017 141 7 7 chr13 2222927 2223231 -99649938 + AluSx SINE Alu 1 304 -8 301 342 7 7 chr13 2223341 2223493 -99649676 + L1MC/D LINE L1 4925 5076 -1070 3847 156 62 40 chr13 2223511 2223789 -99649380 + L1PA16 LINE L1 4683 4953 -1213 3847 129 52 53 chr13 2223789 2224523 -99648646 + L1PA16 LINE L1 5431 6166 0 3847 156 62 40 chr13 2224523 2224858 -99648311 + L1PA16 LINE L1 4953 6166 0 1804 160 3 0 chr13 2225040 2225354 -99647815 - AluSx SINE Alu 0 315 1 23 0 0 0 chr13 2226645 2226668 -99646501 + AT_rich Low_complexity Low_complexity 1 23 0 2185 104 7 0 chr13 2226753 2227032 -99646137 + AluSq SINE Alu 1 281 -32 395 191 0 64 chr13 2227044 2227138 -99646031 - L1MC4 LINE L1 -1339 6703 6616 276 229 0 0 chr13 2227145 2227228 -99645941 + (TA)n Simple_repeat Simple_repeat 1 83 0 249 292 42 21 chr13 2227287 2227383 -99645786 + MER5B DNA MER1_type 1 98 -80 280 213 113 43 chr13 2227632 2227773 -99645396 + L1MC/D LINE L1 5317 5467 -2341 2689 118 14 21 chr13 2227798 2228232 -99644937 - L1PA13 LINE L1 0 6163 5733 356 131 16 0 chr13 2228232 2228293 -99644876 + MER52C LTR ERV1 1 62 -1216 6016 122 101 28 chr13 2228293 2229332 -99643837 + MER52C LTR ERV1 164 1278 0 4028 98 17 41 chr13 2229333 2229916 -99643253 + MER52C-int LTR ERV1 3 571 -6520 4154 166 28 4 chr13 2230016 2231278 -99641891 + MER52C-int LTR ERV1 1775 3204 -3887 3972 170 24 15 chr13 2231297 2231978 -99641191 + MER52C-int LTR ERV1 807 1493 -5598 697 139 70 0 chr13 2231998 2232113 -99641056 + MER52C-int LTR ERV1 1006 1128 -4818 2506 167 54 32 chr13 2232117 2232784 -99640385 + MER52C-int LTR ERV1 1416 1990 -3596 3182 148 75 8 chr13 2232829 2233331 -99639838 + MER52C-int LTR ERV1 692 1259 -6557 360 0 0 0 chr13 2233331 2233371 -99639798 + (TG)n Simple_repeat Simple_repeat 2 41 0 3182 148 75 8 chr13 2233371 2233491 -99639678 + MER52C-int LTR ERV1 1259 1369 -6447 260 128 0 0 chr13 2233469 2233516 -99639653 + MER52C-int LTR ERV1 1064 1110 -7010 * 2655 203 157 68 chr13 2233515 2234680 -99638489 + MER52C-int LTR ERV1 4480 5748 -1670 299 83 62 0 chr13 2234678 2234726 -99638443 + MER52C-int LTR ERV1 5976 6026 -1179 * 1408 91 10 20 chr13 2234728 2234926 -99638243 + MER52C-int LTR ERV1 6892 7087 -4 1398 146 64 6 chr13 2234926 2235195 -99637974 + MER52C LTR ERV1 23 390 -888 3740 110 9 13 chr13 2235198 2236181 -99636988 - L1P4 LINE L1 -427 5736 4761 584 298 58 4 chr13 2236226 2236468 -99636701 + L1ME4a LINE L1 5574 5828 -293 352 264 98 12 chr13 2236623 2236786 -99636383 - MIR SINE MIR 0 262 86 27 0 0 0 chr13 2236963 2236990 -99636179 + AT_rich Low_complexity Low_complexity 1 27 0 205 273 0 0 chr13 2237059 2237103 -99636066 + (TG)n Simple_repeat Simple_repeat 2 45 0 214 227 0 0 chr13 2237330 2237374 -99635795 + MIR3 SINE MIR 158 201 -7 3412 163 20 34 chr13 2237511 2238166 -99635003 - L1MB2 LINE L1 -3 6168 5523 2100 166 19 27 chr13 2238230 2238711 -99634458 + pTR5 LTR ERV1 738 1214 -1224 456 306 56 49 chr13 2239462 2239746 -99633423 - L1ME1 LINE L1 -2 6164 5879 263 178 0 40 chr13 2240085 2240186 -99632983 + (TA)n Simple_repeat Simple_repeat 1 97 0 1604 171 43 20 chr13 2241061 2241366 -99631803 - AluJo SINE Alu 0 312 1 539 219 31 20 chr13 2241797 2242015 -99631154 - L1MCc LINE L1 -4890 1533 1434 803 239 0 0 chr13 2242015 2242174 -99630995 - FRAM SINE Alu -3 163 5 539 219 31 20 chr13 2242174 2242203 -99630966 - L1MCc LINE L1 -4989 1434 1407 2020 261 104 59 chr13 2242213 2243326 -99629843 - L1MCc LINE L1 -5238 1185 23 259 235 289 51 chr13 2243333 2243648 -99629521 - HAL1 LINE L1 -1004 1503 1114 263 269 60 101 chr13 2243660 2243809 -99629360 - L1M4 LINE L1 -5692 850 708 304 302 55 33 chr13 2243908 2244090 -99629079 - L1M4 LINE L1 -6319 223 38 525 274 106 43 chr13 2244129 2244479 -99628690 - HAL1 LINE L1 -1398 1109 738 379 265 53 15 chr13 2244537 2244669 -99628500 - HAL1 LINE L1 -1966 541 405 373 256 48 24 chr13 2244886 2245011 -99628158 - HAL1 LINE L1 -2364 143 16 182 356 79 10 chr13 2246622 2246723 -99626446 + L2 LINE L2 3137 3244 -28 203 289 66 42 chr13 2247023 2247149 -99626020 - MIR SINE MIR -68 140 35 515 263 96 17 chr13 2247359 2247580 -99625589 - MIR SINE MIR -18 244 3 432 293 45 0 chr13 2248492 2248625 -99624544 - L2 LINE L2 0 3272 3134 2294 116 3 0 chr13 2248643 2248954 -99624215 + AluSx SINE Alu 1 312 0 1604 265 64 49 chr13 2249425 2250366 -99622803 + L1MC5 LINE L1 6096 7072 -889 2762 159 39 33 chr13 2250393 2250883 -99622286 - LTR42 LTR ERVL 0 495 3 898 229 112 46 chr13 2250898 2251334 -99621835 + L1MC5 LINE L1 7269 7733 -228 255 309 73 15 chr13 2251818 2252022 -99621147 + L1MEc LINE L1 898 1113 -6025 418 288 69 2 chr13 2252397 2252615 -99620554 + L1MEc LINE L1 1379 1680 -5323 307 361 0 0 chr13 2252665 2252798 -99620371 + LTR16B LTR ERVL 1 133 -331 3127 262 75 25 chr13 2252805 2254087 -99619082 + L1MEc LINE L1 2295 3511 -3446 1993 157 3 10 chr13 2254087 2254400 -99618769 - AluSx SINE Alu -1 311 1 3127 262 75 25 chr13 2254400 2255053 -99618116 + L1MEc LINE L1 3511 4422 -2535 2049 116 34 7 chr13 2255053 2255346 -99617823 + AluSx SINE Alu 1 301 -11 3127 262 75 25 chr13 2255346 2255522 -99617647 + L1MEc LINE L1 4422 4588 -2369 263 233 8 42 chr13 2255590 2255710 -99617459 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 25 0 0 0 chr13 2256061 2256086 -99617083 + AT_rich Low_complexity Low_complexity 1 25 0 434 286 7 7 chr13 2256773 2256920 -99616249 + LTR16B LTR ERVL 1 147 -317 417 266 89 13 chr13 2256950 2257108 -99616061 + LTR16B LTR ERVL 293 462 -2 230 272 93 107 chr13 2257461 2257902 -99615267 - L2 LINE L2 -666 2648 2214 891 128 8 8 chr13 2260469 2260594 -99612575 + AluSq/x SINE Alu 1 125 -188 201 147 0 0 chr13 2261453 2261487 -99611682 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 2023 129 7 0 chr13 2261492 2261770 -99611399 - AluSx SINE Alu -32 280 1 6324 156 36 13 chr13 2262054 2263109 -99610060 + ERVL-D LTR ERVL 3806 4884 -880 2968 154 31 19 chr13 2263109 2263649 -99609520 + ERVL-D LTR ERVL 5211 5757 -7 1403 204 143 30 chr13 2263649 2264021 -99609148 + MLT2D LTR ERVL 1 414 0 2434 82 0 3 chr13 2264115 2264420 -99608749 - AluY SINE Alu -7 304 1 484 234 113 63 chr13 2265677 2265916 -99607253 - MER112 DNA MER1_type -7 253 3 3040 171 49 4 chr13 2266241 2266772 -99606397 - MER41D LTR ERV1 -2 555 1 414 193 61 35 chr13 2267030 2267144 -99606025 + MER21B LTR ERV1 690 806 -57 1813 194 21 5 chr13 2267171 2267548 -99605621 + L1MB4 LINE L1 5792 6174 -6 344 200 0 0 chr13 2267603 2267668 -99605501 + L1MB8 LINE L1 6113 6177 -1 584 81 11 0 chr13 2268341 2268428 -99604741 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 1592 177 27 3 chr13 2268428 2268728 -99604441 - AluSx SINE Alu -5 307 1 2782 127 27 22 chr13 2268840 2269085 -99604084 + HUERS-P2 LTR ERV1 2187 2429 -659 1942 125 7 14 chr13 2269085 2269382 -99603787 + AluSq SINE Alu 1 295 -18 2782 127 27 22 chr13 2269382 2269955 -99603214 + HUERS-P2 LTR ERV1 2429 3061 -27 718 101 18 18 chr13 2269966 2270075 -99603094 - MER41D LTR ERV1 -448 109 1 3687 149 77 73 chr13 2270174 2270954 -99602215 + LTR1 LTR ERV1 3 785 0 227 355 47 0 chr13 2271937 2272044 -99601125 - L2 LINE L2 0 3272 3161 18320 93 2 3 chr13 2272377 2275841 -99597328 + L1PA8 LINE L1 2670 6165 -7 21 0 0 0 chr13 2276194 2276215 -99596954 + AT_rich Low_complexity Low_complexity 1 21 0 184 288 45 15 chr13 2277124 2277190 -99595979 - MIR SINE MIR -181 81 14 386 276 83 26 chr13 2277267 2277423 -99595746 - L3 LINE CR1 -289 1288 1124 289 372 17 23 chr13 2277521 2277691 -99595478 - L3 LINE CR1 -712 865 697 332 295 32 11 chr13 2277691 2277786 -99595383 + MIR SINE MIR 2 98 -164 1342 163 23 9 chr13 2278139 2278528 -99594641 - LTR32 LTR ERVL 0 471 15 278 342 136 50 chr13 2279162 2279545 -99593624 - L3 LINE CR1 -1134 443 28 280 177 62 73 chr13 2279593 2279689 -99593480 - L1ME4a LINE L1 -63 6058 5964 936 249 94 57 chr13 2279719 2279913 -99593256 - HAL1b LINE L1 0 1348 1163 2133 57 17 37 chr13 2279913 2280213 -99592956 + AluSg SINE Alu 1 294 -16 936 249 94 57 chr13 2280213 2280581 -99592588 - HAL1b LINE L1 -185 1163 765 651 217 82 124 chr13 2280736 2280879 -99592290 - HAL1b LINE L1 -883 465 318 1933 155 0 0 chr13 2280879 2281189 -99591980 - AluSx SINE Alu -2 310 1 651 217 82 124 chr13 2281189 2281400 -99591769 - HAL1b LINE L1 -1030 318 126 1657 142 31 52 chr13 2282508 2282832 -99590337 + L1MB3 LINE L1 5655 5971 -212 964 161 30 13 chr13 2282876 2283085 -99590084 + L1MB3 LINE L1 5928 6142 -41 2233 98 0 9 chr13 2283085 2283400 -99589769 + AluSx SINE Alu 1 312 0 234 111 333 22 chr13 2283500 2283590 -99589579 - MER5A DNA MER1_type -68 121 4 488 302 47 6 chr13 2284478 2284650 -99588519 - MER112 DNA MER1_type -7 253 75 213 263 158 0 chr13 2285252 2285347 -99587822 + MIR SINE MIR 71 180 -82 210 355 57 40 chr13 2285451 2285575 -99587594 - MIR SINE MIR -65 143 18 2637 13 0 13 chr13 2285730 2286037 -99587132 - AluYa5 SINE Alu -8 303 1 26 0 0 0 chr13 2286215 2286241 -99586928 + AT_rich Low_complexity Low_complexity 1 26 0 324 224 31 99 chr13 2286243 2286435 -99586734 - L1MC5 LINE L1 -209 7752 7574 280 241 19 0 chr13 2286519 2286573 -99586596 + L2 LINE L2 3218 3272 0 1019 185 0 24 chr13 2286615 2286820 -99586349 - AluJo SINE Alu -17 295 96 259 336 82 33 chr13 2286837 2286959 -99586210 + MIR3 SINE MIR 33 160 -48 219 336 49 57 chr13 2287370 2287535 -99585634 - MIR SINE MIR -43 165 12 745 203 0 0 chr13 2287960 2288093 -99585076 + AluJo/FLAM SINE Alu 1 133 -169 273 227 16 16 chr13 2288093 2288135 -99585034 + AluSc SINE Alu 132 148 -151 255 231 0 0 chr13 2288135 2288187 -99584982 + LTR30 LTR ERV1 1 52 -670 2144 132 31 146 chr13 2288187 2288727 -99584442 + LTR12 LTR ERV1 55 480 -234 781 114 16 16 chr13 2288728 2288851 -99584318 + AluSg/x SINE Alu 172 294 -18 196 315 146 23 chr13 2288966 2289096 -99584073 + MIR SINE MIR 111 256 -6 195 297 232 0 chr13 2289713 2289851 -99583318 + MIR3 SINE MIR 1 170 -38 427 86 0 0 chr13 2290115 2290173 -99582996 - MADE1 DNA Mariner -5 75 18 186 322 22 44 chr13 2291343 2291433 -99581736 + L2 LINE L2 3137 3224 -48 849 199 0 23 chr13 2292068 2292239 -99580930 + FRAM SINE Alu 8 174 -2 2187 106 0 3 chr13 2292493 2292796 -99580373 - AluSx SINE Alu -10 302 1 2302 63 0 13 chr13 2293205 2293506 -99579663 + AluY SINE Alu 1 297 -14 448 322 132 0 chr13 2293594 2293821 -99579348 - MIR SINE MIR 0 262 6 657 237 43 53 chr13 2294254 2294461 -99578708 - MER3 DNA MER1_type -2 207 3 2379 81 0 3 chr13 2294517 2294824 -99578345 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr13 2295191 2295211 -99577958 + (TC)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr13 2295880 2295908 -99577261 + AT_rich Low_complexity Low_complexity 1 28 0 988 223 119 86 chr13 2296809 2297262 -99575907 + MLT1J LTR MaLR 25 492 -19 272 107 125 0 chr13 2297458 2297514 -99575655 - Alu SINE Alu 0 300 238 409 282 80 0 chr13 2298342 2298524 -99574645 + L1MEc LINE L1 1379 1535 -5324 316 361 0 0 chr13 2298574 2298707 -99574462 + LTR16B LTR ERVL 1 133 -331 1773 276 53 19 chr13 2298714 2299994 -99573175 + L1MEc LINE L1 2295 3638 -3319 1875 157 3 10 chr13 2299999 2300312 -99572857 - AluSx SINE Alu -1 311 1 23 0 0 0 chr13 2300396 2300419 -99572750 + AT_rich Low_complexity Low_complexity 1 23 0 356 335 6 6 chr13 2301121 2301294 -99571875 + (CA)n Simple_repeat Simple_repeat 1 173 0 2039 224 18 2 chr13 2302933 2303385 -99569784 + L1MB7 LINE L1 5726 6184 0 614 261 67 56 chr13 2304331 2304615 -99568554 + L2 LINE L2 1913 2199 -1115 841 274 77 24 chr13 2304893 2305339 -99567830 + L1MEc LINE L1 895 1389 -4921 2137 108 7 0 chr13 2305339 2305645 -99567524 + AluSq SINE Alu 1 308 -5 841 274 77 24 chr13 2305645 2305819 -99567350 + L1MEc LINE L1 1389 1552 -4758 991 269 65 63 chr13 2305822 2306250 -99566919 + L2 LINE L2 2282 2710 -604 799 279 217 9 chr13 2306351 2306834 -99566335 + L2 LINE L2 2687 3309 -4 197 224 15 104 chr13 2307361 2307428 -99565741 - L2 LINE L2 -9 3304 3244 286 358 83 8 chr13 2307434 2307554 -99565615 - MER5A DNA MER1_type 0 189 61 419 52 17 0 chr13 2307870 2307928 -99565241 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1264 214 43 23 chr13 2307933 2308232 -99564937 - L1MC2 LINE L1 -56 6288 5984 1534 161 43 39 chr13 2308603 2308908 -99564261 + AluJo SINE Alu 1 306 -6 2528 199 42 7 chr13 2310528 2310878 -99562291 - L1MB7 LINE L1 0 6184 5807 2000 120 14 7 chr13 2310878 2311170 -99561999 - AluSx SINE Alu -14 298 5 2528 199 42 7 chr13 2311170 2311366 -99561803 - L1MB7 LINE L1 -377 5807 5619 2713 152 24 35 chr13 2311748 2312241 -99560928 + LTR45B LTR ERV1 2 489 0 274 221 191 0 chr13 2312446 2312514 -99560655 - L2 LINE L2 -26 3287 3207 350 250 68 57 chr13 2313464 2313567 -99559602 - MER5B DNA MER1_type 0 178 71 1945 138 6 6 chr13 2313567 2313878 -99559291 - AluY SINE Alu 0 311 1 350 250 68 57 chr13 2313878 2313950 -99559219 - MER5B DNA MER1_type -107 71 1 208 287 0 0 chr13 2314602 2314710 -99558459 + (GGGTG)n Simple_repeat Simple_repeat 4 111 0 387 0 0 0 chr13 2317001 2317044 -99556125 + (TG)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr13 2317044 2317073 -99556096 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1467 150 0 5 chr13 2317099 2317312 -99555857 + AluSq SINE Alu 1 212 -101 442 50 0 17 chr13 2317312 2317372 -99555797 + AluSq/x SINE Alu 78 136 -177 2266 114 0 3 chr13 2317373 2317670 -99555499 + AluSx SINE Alu 3 298 -14 2303 116 10 0 chr13 2318406 2318716 -99554453 + AluSp SINE Alu 1 313 0 2167 111 19 32 chr13 2318766 2319082 -99554087 + AluSx SINE Alu 1 312 0 27 29 0 0 chr13 2319125 2319159 -99554010 + AT_rich Low_complexity Low_complexity 1 34 0 1861 171 42 46 chr13 2319179 2319611 -99553558 - MSTB1 LTR MaLR -2 430 1 207 0 0 0 chr13 2320136 2320159 -99553010 + (T)n Simple_repeat Simple_repeat 1 23 0 431 197 68 8 chr13 2320742 2320874 -99552295 + L1ME2 LINE L1 5182 5321 -825 483 183 0 0 chr13 2320884 2320966 -99552203 + FLAM_A SINE Alu 42 123 -19 688 210 81 5 chr13 2320999 2321185 -99551984 + L1ME2 LINE L1 5328 5527 -635 1190 195 4 22 chr13 2321185 2321411 -99551758 - AluJo SINE Alu -18 294 73 1451 225 58 41 chr13 2321416 2321883 -99551286 + L1ME2 LINE L1 5535 6009 -155 439 152 38 60 chr13 2322015 2322199 -99550970 + (CA)n Simple_repeat Simple_repeat 1 180 0 326 140 45 40 chr13 2322241 2322661 -99550508 + (CA)n Simple_repeat Simple_repeat 1 422 0 404 184 226 16 chr13 2322830 2323020 -99550149 + MLT1B LTR MaLR 28 257 -133 228 221 95 21 chr13 2323456 2323551 -99549618 - MIR SINE MIR -132 130 29 266 233 0 0 chr13 2324106 2324166 -99549003 + L2 LINE L2 2471 2530 -784 1035 216 39 49 chr13 2324278 2324584 -99548585 + MER58B DNA MER1_type 39 341 0 332 258 215 27 chr13 2324585 2324841 -99548328 + L2 LINE L2 2673 2976 -338 671 194 0 4 chr13 2325042 2325310 -99547859 + (TGG)n Simple_repeat Simple_repeat 1 266 0 301 282 155 7 chr13 2325657 2325799 -99547370 - L1ME4a LINE L1 -13 6108 5946 2311 72 17 10 chr13 2325916 2326206 -99546963 + AluY SINE Alu 1 292 -19 2261 113 23 10 chr13 2327157 2327466 -99545703 - AluSq SINE Alu 0 313 1 224 306 0 0 chr13 2327466 2327528 -99545641 - L2 LINE L2 -10 3303 3242 947 287 74 51 chr13 2328062 2328952 -99544217 + L2 LINE L2 2383 3309 -4 1146 251 43 15 chr13 2329405 2329731 -99543438 + L1MD3 LINE L1 7467 7801 -194 1203 168 13 35 chr13 2330439 2330671 -99542498 + AluJo SINE Alu 86 312 0 306 286 108 14 chr13 2331427 2331640 -99541529 + L1ME2 LINE L1 5576 5808 -313 189 238 24 0 chr13 2331642 2331684 -99541485 + L2 LINE L2 2348 2390 -924 474 272 209 10 chr13 2331694 2331900 -99541269 + MIR SINE MIR 2 248 -14 1674 177 112 58 chr13 2331900 2332329 -99540840 - LTR47A LTR ERVL 0 452 1 624 258 8 0 chr13 2332343 2332475 -99540694 - MER5B DNA MER1_type -11 167 35 327 319 89 41 chr13 2332478 2332914 -99540255 + L1ME LINE L1 141 597 -5608 1367 271 88 79 chr13 2333109 2333418 -99539751 + L1ME LINE L1 663 968 -5428 2337 88 0 0 chr13 2333418 2333702 -99539467 + AluSx SINE Alu 1 284 -28 1367 271 88 79 chr13 2333702 2334859 -99538310 + L1ME LINE L1 968 2147 -4249 2229 129 49 56 chr13 2334859 2335307 -99537862 + MER65A LTR ERV1 1 445 0 1367 271 88 79 chr13 2335307 2335438 -99537731 + L1ME LINE L1 2147 2275 -4121 470 317 76 15 chr13 2335436 2335764 -99537405 + L1ME LINE L1 37 384 -6012 * 1984 174 0 0 chr13 2335997 2336307 -99536862 + AluJb SINE Alu 1 310 -2 1944 264 26 22 chr13 2336314 2337035 -99536134 + L1ME LINE L1 3134 3857 -2358 942 193 5 0 chr13 2337044 2337231 -99535938 + L1ME LINE L1 3973 4160 -2055 540 214 13 120 chr13 2337213 2337530 -99535639 + L1ME2 LINE L1 5881 6163 -1 * 399 305 117 65 chr13 2337661 2338461 -99534708 + L2 LINE L2 2437 3271 -1 21 0 0 0 chr13 2339081 2339102 -99534067 + AT_rich Low_complexity Low_complexity 1 21 0 276 236 39 94 chr13 2339129 2339332 -99533837 + L1ME4a LINE L1 5929 6120 -1 265 319 90 21 chr13 2339804 2339948 -99533221 + MIR SINE MIR 92 245 -17 367 311 57 36 chr13 2340011 2340204 -99532965 - MIR SINE MIR -1 261 65 1287 228 70 48 chr13 2340211 2340668 -99532501 + MLT1C LTR MaLR 1 467 0 180 252 185 50 chr13 2341799 2341918 -99531251 + MIR SINE MIR 128 262 0 2373 107 0 0 chr13 2342095 2342395 -99530774 + AluSq SINE Alu 1 300 -13 201 175 0 0 chr13 2342867 2342907 -99530262 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 236 185 31 15 chr13 2343551 2343616 -99529553 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 693 167 9 0 chr13 2343778 2343886 -99529283 + FLAM_A SINE Alu 1 109 -33 22 0 0 0 chr13 2343888 2343910 -99529259 + AT_rich Low_complexity Low_complexity 1 22 0 2367 106 0 0 chr13 2346116 2346417 -99526752 + AluSg SINE Alu 1 301 -9 4405 168 35 9 chr13 2346501 2347371 -99525798 + L1 LINE L1 3734 4625 -1521 2180 130 0 3 chr13 2347808 2348108 -99525061 - AluSx SINE Alu -13 299 1 258 32 0 0 chr13 2348371 2348402 -99524767 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2245 92 7 0 chr13 2349152 2349434 -99523735 + AluY SINE Alu 1 284 -27 441 0 0 0 chr13 2349434 2349483 -99523686 + (CA)n Simple_repeat Simple_repeat 2 50 0 864 109 109 0 chr13 2350472 2350591 -99522578 + AluSp SINE Alu 1 132 -181 2206 107 7 0 chr13 2350595 2350896 -99522273 + AluSp SINE Alu 3 305 0 204 208 21 21 chr13 2352574 2352622 -99520547 + L2 LINE L2 3225 3272 0 2302 104 0 3 chr13 2354535 2354833 -99518336 + AluSx SINE Alu 1 297 -15 609 26 0 0 chr13 2358156 2358233 -99514936 - L1PA3 LINE L1 -1819 4327 4251 8840 26 1 1 chr13 2358233 2360106 -99513063 + L1PA3 LINE L1 4327 6167 0 760 272 86 0 chr13 2360239 2360471 -99512698 - MIR SINE MIR -3 259 8 280 272 114 88 chr13 2361549 2361821 -99511348 - L3 LINE CR1 -2 1575 1297 309 309 12 12 chr13 2361839 2361923 -99511246 - L3 LINE CR1 -427 1150 1067 239 252 71 31 chr13 2361962 2362089 -99511080 - L1ME4a LINE L1 -21 6100 5969 1525 158 104 6 chr13 2363051 2363379 -99509790 - MER46B DNA MER2_type 0 236 2 2173 102 3 3 chr13 2363440 2363755 -99509414 + AluSx SINE Alu 1 315 0 207 0 0 0 chr13 2363754 2363777 -99509392 + (CA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr13 2363803 2363825 -99509344 + (TG)n Simple_repeat Simple_repeat 1 22 0 303 307 260 0 chr13 2365358 2365550 -99507619 - L1ME4a LINE L1 -227 5943 5702 319 263 21 0 chr13 2365635 2365730 -99507439 - L1ME4a LINE L1 -630 5534 5438 1392 187 75 69 chr13 2367431 2367806 -99505363 - MLT2C1 LTR ERVL 0 397 21 1835 238 23 34 chr13 2368140 2368630 -99504539 + L1M4 LINE L1 3160 3643 -2503 1345 147 54 0 chr13 2368630 2368854 -99504315 + MER46A DNA MER2_type 1 236 0 1835 238 23 34 chr13 2368854 2368980 -99504189 + L1M4 LINE L1 3643 3769 -2377 276 211 18 0 chr13 2368982 2369039 -99504130 + L1M4 LINE L1 3796 3853 -2293 257 128 21 0 chr13 2372495 2372542 -99500627 + GA-rich Low_complexity Low_complexity 3 50 0 1259 166 0 0 chr13 2373190 2373389 -99499780 + AluJo SINE Alu 1 199 -113 226 241 46 35 chr13 2373548 2373635 -99499534 + LTR30 LTR ERV1 556 643 -79 380 108 140 32 chr13 2373636 2373729 -99499440 + LTR12 LTR ERV1 481 583 -131 923 191 43 22 chr13 2373913 2374143 -99499026 + L1MB3 LINE L1 5943 6177 -6 687 216 66 12 chr13 2375917 2376084 -99497085 + FRAM SINE Alu 1 176 0 2165 50 0 0 chr13 2376212 2376473 -99496696 - AluY SINE Alu -14 297 37 196 331 55 24 chr13 2377456 2377583 -99495586 + L2 LINE L2 2869 2999 -273 248 193 70 0 chr13 2377969 2378026 -99495143 + MER5A DNA MER1_type 88 148 -41 426 189 53 0 chr13 2378280 2378375 -99494794 + L1MB8 LINE L1 6078 6177 -1 240 35 0 0 chr13 2378417 2378446 -99494723 + (A)n Simple_repeat Simple_repeat 1 29 0 1472 232 53 48 chr13 2378759 2379282 -99493887 + MER39 LTR ERV1 1 707 0 672 242 21 16 chr13 2380091 2380277 -99492892 + MER5A DNA MER1_type 2 188 -1 277 235 37 25 chr13 2381581 2381662 -99491507 + L1MC5 LINE L1 7844 7925 -36 2459 44 0 7 chr13 2381869 2382166 -99491003 - AluY SINE Alu -16 295 1 583 275 109 22 chr13 2382196 2382472 -99490697 - L1M4 LINE L1 -920 5226 4927 954 179 0 36 chr13 2382656 2382852 -99490317 - AluJb SINE Alu -5 307 119 1802 286 110 30 chr13 2382921 2384105 -99489064 - L1M4 LINE L1 -1559 4587 3309 859 207 35 83 chr13 2384144 2384482 -99488687 - L1MC5 LINE L1 -726 7235 6914 1363 123 107 35 chr13 2384502 2384564 -99488605 - L1PA16 LINE L1 -9 6157 6101 2407 113 19 19 chr13 2384564 2384928 -99488241 + THE1B LTR MaLR 1 364 0 1363 123 107 35 chr13 2384928 2385126 -99488043 - L1PA16 LINE L1 -65 6101 5878 281 314 119 8 chr13 2385375 2385493 -99487676 - L2 LINE L2 -5 3267 3137 223 233 33 17 chr13 2386554 2386614 -99486555 + CT-rich Low_complexity Low_complexity 1 61 0 724 100 40 0 chr13 2386706 2386806 -99486363 - LTR12 LTR ERV1 0 714 611 295 177 70 32 chr13 2386811 2386892 -99486277 - LTR30 LTR ERV1 -75 624 479 1401 106 0 121 chr13 2386892 2387118 -99486051 - LTR12 LTR ERV1 -429 285 94 2268 68 10 0 chr13 2387118 2387411 -99485758 - AluY SINE Alu -15 296 1 1401 106 0 121 chr13 2387411 2387449 -99485720 - LTR12 LTR ERV1 -620 94 53 226 269 0 0 chr13 2387449 2387501 -99485668 - LTR30 LTR ERV1 -670 52 1 448 204 11 0 chr13 2387738 2387826 -99485343 + MER3 DNA MER1_type 1 89 -120 323 295 151 43 chr13 2387856 2388337 -99484832 - L2 LINE L2 -65 3248 2640 235 309 0 0 chr13 2389015 2389083 -99484086 + G-rich Low_complexity Low_complexity 2 69 0 1928 244 81 40 chr13 2389198 2390528 -99482641 - L1MCc LINE L1 -4740 2201 817 2002 122 0 0 chr13 2391547 2391826 -99481343 + AluSx SINE Alu 1 279 -33 200 59 29 0 chr13 2391830 2391864 -99481305 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 433 251 62 72 chr13 2392142 2392336 -99480833 - L1MEd LINE L1 -5191 928 734 2024 101 0 4 chr13 2392954 2393230 -99479939 + AluSx SINE Alu 14 288 -24 22 0 0 0 chr13 2393664 2393686 -99479483 + AT_rich Low_complexity Low_complexity 1 22 0 2143 124 3 0 chr13 2394266 2394572 -99478597 + AluSx SINE Alu 1 307 -5 512 135 0 0 chr13 2495683 2495757 -99377412 - AluS SINE Alu -238 74 1 683 291 51 22 chr13 2495848 2496425 -99376744 - L1MEc LINE L1 -3687 3254 2701 322 189 0 78 chr13 2496436 2496526 -99376643 - L1MEc LINE L1 -5194 1737 1655 251 279 64 17 chr13 2496528 2496700 -99376469 - L1MEc LINE L1 -4963 1460 1281 735 240 56 0 chr13 2496718 2496914 -99376255 - MER3 DNA MER1_type 0 209 3 350 292 125 14 chr13 2497524 2497691 -99375478 - MIR SINE MIR -63 145 11 928 187 155 5 chr13 2498817 2499004 -99374165 - MER58A DNA MER1_type -9 215 1 23 33 0 0 chr13 2499283 2499313 -99373856 + AT_rich Low_complexity Low_complexity 1 30 0 351 143 0 16 chr13 2499971 2500034 -99373135 - HsTC2 DNA Tc2 -13 1885 1824 278 216 40 27 chr13 2500034 2500108 -99373061 + L1ME2 LINE L1 6031 6105 -59 28 71 0 0 chr13 2500108 2500164 -99373005 + AT_rich Low_complexity Low_complexity 1 56 0 1992 156 0 0 chr13 2500676 2500964 -99372205 - AluSx SINE Alu -19 293 6 531 289 228 0 chr13 2501454 2501651 -99371518 - MIR SINE MIR 0 262 21 21 89 0 0 chr13 2501696 2501752 -99371417 + AT_rich Low_complexity Low_complexity 1 56 0 759 255 109 73 chr13 2501901 2501967 -99371202 - MLT1L LTR MaLR 0 615 553 2071 126 3 16 chr13 2501967 2502276 -99370893 + AluJo SINE Alu 1 305 -7 759 255 109 73 chr13 2502276 2502660 -99370509 - MLT1L LTR MaLR -62 553 149 1016 175 7 0 chr13 2503361 2503515 -99369654 + FAM SINE Alu 1 155 -30 2135 114 3 28 chr13 2503516 2503833 -99369336 - AluSx SINE Alu -3 309 1 1551 166 0 51 chr13 2504001 2504332 -99368837 + AluJo SINE Alu 1 316 0 793 141 0 59 chr13 2505566 2505701 -99367468 + AluJo/FLAM SINE Alu 1 127 -185 2399 61 0 7 chr13 2505704 2505997 -99367172 + AluY SINE Alu 1 291 -20 24 0 0 0 chr13 2505997 2506021 -99367148 + AT_rich Low_complexity Low_complexity 1 24 0 2904 194 51 27 chr13 2508945 2509443 -99363726 + L1MB8 LINE L1 5450 5972 -206 2199 114 0 0 chr13 2509443 2509740 -99363429 + AluSx SINE Alu 1 297 -15 2904 194 51 27 chr13 2509740 2509953 -99363216 + L1MB8 LINE L1 5972 6178 0 209 321 71 24 chr13 2510318 2510402 -99362767 + MIR3 SINE MIR 99 186 -22 1917 133 14 0 chr13 2510566 2510851 -99362318 - AluSx SINE Alu -10 302 14 2130 130 0 0 chr13 2510962 2511254 -99361915 + AluSg SINE Alu 1 292 -18 1265 90 12 0 chr13 2511597 2511763 -99361406 + AluSq SINE Alu 133 300 -13 579 199 209 71 chr13 2511777 2511973 -99361196 + MIR SINE MIR 5 227 -35 2024 137 0 10 chr13 2511973 2512272 -99360897 + AluJb SINE Alu 1 296 -16 480 224 19 19 chr13 2512272 2512379 -99360790 + AluJb SINE Alu 135 241 -71 1028 181 8 63 chr13 2512387 2512625 -99360544 + AluJo SINE Alu 85 309 -3 23 68 0 0 chr13 2512659 2512703 -99360466 + AT_rich Low_complexity Low_complexity 1 44 0 1742 184 0 3 chr13 2513031 2513333 -99359836 + AluJb SINE Alu 1 301 0 36 87 0 0 chr13 2513489 2513581 -99359588 + AT_rich Low_complexity Low_complexity 1 92 0 1929 226 34 36 chr13 2513997 2514467 -99358702 - MER21B LTR ERV1 -202 661 193 1134 222 89 81 chr13 2514470 2514953 -99358216 + L1MDa LINE L1 492 1074 -5466 2126 138 0 6 chr13 2514957 2515268 -99357901 + AluSx SINE Alu 2 310 -2 246 259 27 62 chr13 2515273 2515385 -99357784 + L1M4 LINE L1 3455 3562 -2584 1887 145 44 7 chr13 2517832 2518129 -99355040 + AluSg SINE Alu 1 308 -2 366 339 6 28 chr13 2518319 2518541 -99354628 + G-rich Low_complexity Low_complexity 1 216 0 1966 128 40 10 chr13 2519075 2519372 -99353797 - AluSx SINE Alu -6 306 1 1085 76 0 0 chr13 2519375 2519507 -99353662 - AluY SINE Alu -179 132 1 255 287 14 77 chr13 2519541 2519684 -99353485 - MER5A DNA MER1_type -21 168 35 507 225 47 16 chr13 2519714 2519843 -99353326 + MER5B DNA MER1_type 17 149 -29 197 324 14 14 chr13 2519925 2519996 -99353173 - MER5B DNA MER1_type -87 91 21 2155 93 0 4 chr13 2520137 2520415 -99352754 - AluY SINE Alu -6 305 29 1553 251 68 38 chr13 2520715 2521732 -99351437 - L1ME3A LINE L1 -213 5957 4724 1071 193 51 77 chr13 2521733 2521850 -99351319 + MLT1A1 LTR MaLR 1 120 -245 1581 88 5 5 chr13 2521850 2522065 -99351104 - AluSc SINE Alu -8 301 87 1071 193 51 77 chr13 2522065 2522344 -99350825 + MLT1A1 LTR MaLR 120 405 40 221 0 35 0 chr13 2522344 2522373 -99350796 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1846 153 0 4 chr13 2522373 2522654 -99350515 - AluSx SINE Alu -32 280 1 1071 193 51 77 chr13 2522654 2522693 -99350476 + MLT1A1 LTR MaLR 322 360 -5 384 243 56 0 chr13 2522696 2522803 -99350366 - L1ME3A LINE L1 -1417 4729 4617 279 0 0 0 chr13 2522814 2522845 -99350324 + (A)n Simple_repeat Simple_repeat 1 31 0 2147 186 34 5 chr13 2522873 2523319 -99349850 - L1MC1 LINE L1 -9 6258 5800 892 151 73 28 chr13 2523322 2523501 -99349668 - MER46A DNA MER2_type -4 232 46 4018 204 25 16 chr13 2523512 2524761 -99348408 - L1MC1 LINE L1 -562 5705 4440 2233 75 4 7 chr13 2524761 2525062 -99348107 - AluY SINE Alu 0 300 1 4018 204 25 16 chr13 2525062 2525293 -99347876 - L1MC1 LINE L1 -1827 4440 4213 403 254 167 4 chr13 2525281 2525509 -99347660 - L1MC1 LINE L1 -3275 2805 2541 * 935 154 77 16 chr13 2525515 2525697 -99347472 - MER21B LTR ERV1 -364 499 307 715 118 133 0 chr13 2525771 2525906 -99347263 - MER21A LTR ERV1 -778 153 1 569 159 45 89 chr13 2525906 2526063 -99347106 - MER21A-int LTR ERV1 0 4191 4042 1348 148 70 0 chr13 2526080 2526350 -99346819 - L1MA8 LINE L1 -22 6269 5981 405 288 93 0 chr13 2526492 2526610 -99346559 + MIR SINE MIR 110 238 -24 32 75 0 0 chr13 2527248 2527315 -99345854 + AT_rich Low_complexity Low_complexity 1 67 0 2507 84 0 0 chr13 2527336 2527647 -99345522 - AluY SINE Alu 0 311 1 2425 98 0 3 chr13 2528735 2529041 -99344128 + AluSx SINE Alu 1 305 -7 276 318 31 0 chr13 2531590 2531719 -99341450 - L1MC1 LINE L1 -5936 134 2 735 148 39 23 chr13 2531858 2531986 -99341183 - FLAM_C SINE Alu -3 130 1 316 189 132 0 chr13 2532009 2532133 -99341036 - L1MEd LINE L1 -4739 1321 895 247 325 97 0 chr13 2532630 2532744 -99340425 - MIR3 SINE MIR -2 206 82 1777 159 31 3 chr13 2533157 2533446 -99339723 + AluJb SINE Alu 6 302 -10 995 112 22 39 chr13 2534441 2534620 -99338549 - THE1C LTR MaLR 0 375 200 258 267 36 67 chr13 2534618 2534783 -99338386 - LTR16A LTR ERVL -228 222 63 * 378 224 95 20 chr13 2535128 2535275 -99337894 - MLT1H LTR MaLR 0 549 392 2084 108 0 69 chr13 2535710 2536043 -99337126 + AluSx SINE Alu 1 310 -2 3471 75 37 0 chr13 2536090 2536571 -99336598 - L1PA4 LINE L1 0 6155 5657 2097 61 0 41 chr13 2536906 2537201 -99335968 + L1PA8 LINE L1 5887 6169 -3 232 237 52 41 chr13 2537994 2538091 -99335078 - MLT1-int LTR MaLR -1269 102 5 2550 159 61 10 chr13 2538104 2538593 -99334576 + L1MB7 LINE L1 5671 6184 0 269 235 103 7 chr13 2538593 2538723 -99334446 - MLT2E LTR ERVL -14 614 472 802 243 35 31 chr13 2538851 2539106 -99334063 - MLT2E LTR ERVL -353 275 20 305 349 105 0 chr13 2539966 2540138 -99333031 - L1MC/D LINE L1 -2174 5634 5445 636 242 144 43 chr13 2540420 2540788 -99332381 - HAL1 LINE L1 -1514 993 589 307 270 138 20 chr13 2540790 2540942 -99332227 - L2 LINE L2 -231 3082 2913 2156 121 0 3 chr13 2541068 2541366 -99331803 - AluSx SINE Alu -4 308 12 318 265 114 58 chr13 2541443 2541577 -99331592 - L1MC/D LINE L1 -1065 5081 4956 2349 57 7 4 chr13 2541577 2541899 -99331270 + AluY SINE Alu 1 323 0 318 265 114 58 chr13 2541899 2542106 -99331063 - L1MC/D LINE L1 -1190 4956 4721 1937 152 0 7 chr13 2542150 2542446 -99330723 + AluJb SINE Alu 1 294 -18 2160 108 10 0 chr13 2543607 2543895 -99329274 + AluSx SINE Alu 1 291 -21 1797 130 41 0 chr13 2544853 2545143 -99328026 - AluSx SINE Alu 0 301 1 773 189 0 0 chr13 2545185 2545312 -99327857 + FLAM_C SINE Alu 1 127 -16 1729 167 7 7 chr13 2545328 2545638 -99327531 + AluSx SINE Alu 11 312 0 2378 81 3 3 chr13 2546183 2546490 -99326679 - AluSq SINE Alu -6 307 1 204 163 0 23 chr13 2546497 2546540 -99326629 + T-rich Low_complexity Low_complexity 4 45 0 26 30 0 0 chr13 2546730 2546763 -99326406 + AT_rich Low_complexity Low_complexity 1 33 0 240 335 45 53 chr13 2547267 2547397 -99325772 + L2 LINE L2 707 836 -2478 2198 90 0 68 chr13 2547397 2547718 -99325451 - AluSx SINE Alu -13 299 1 240 335 45 53 chr13 2547718 2547984 -99325185 + L2 LINE L2 836 1100 -2214 1764 191 33 15 chr13 2548799 2549160 -99324009 + L1M4c LINE L1 1227 1597 -4787 186 43 0 0 chr13 2549160 2549183 -99323986 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1764 191 33 15 chr13 2549183 2549214 -99323955 + L1M4c LINE L1 1597 1626 -4758 2149 125 3 0 chr13 2549215 2549519 -99323650 + AluSx SINE Alu 1 305 -7 6832 235 39 17 chr13 2549519 2552002 -99321167 + L1M4c LINE L1 2125 4666 -1716 1653 203 29 7 chr13 2552051 2552469 -99320700 - L1M4 LINE L1 -1272 4874 4448 2096 156 60 24 chr13 2552638 2552712 -99320457 + L1MB4 LINE L1 5705 5775 -405 1519 158 131 0 chr13 2552712 2553010 -99320159 + MER44D DNA MER2_type 1 607 -2 2096 156 60 24 chr13 2553010 2553389 -99319780 + L1MB4 LINE L1 5775 6174 -6 345 171 11 34 chr13 2553400 2553488 -99319681 + L1MB8 LINE L1 6093 6178 0 1402 199 81 0 chr13 2553500 2553772 -99319397 + AluJb SINE Alu 2 295 -17 300 190 70 60 chr13 2553774 2553874 -99319295 + L1ME3A LINE L1 5901 6001 -169 220 206 270 16 chr13 2554291 2554354 -99318815 - MIR SINE MIR -151 111 33 1024 105 0 0 chr13 2556404 2556537 -99316632 - AluSq/x SINE Alu -179 133 1 978 207 0 6 chr13 2556706 2556880 -99316289 + FAM SINE Alu 2 174 -1 1564 122 5 0 chr13 2557612 2557825 -99315344 - AluSg/x SINE Alu -22 288 75 821 138 0 0 chr13 2558355 2558471 -99314698 + AluSq/x SINE Alu 1 116 -196 324 0 0 0 chr13 2558472 2558508 -99314661 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1543 174 60 3 chr13 2558808 2559090 -99314079 - AluSq SINE Alu -15 298 1 896 234 9 14 chr13 2559311 2559525 -99313644 - MER20 DNA MER1_type -1 218 6 1557 205 21 0 chr13 2559921 2560209 -99312960 + AluJo SINE Alu 1 294 -18 2314 96 0 0 chr13 2560358 2560651 -99312518 - AluSg SINE Alu -17 293 1 1142 288 81 36 chr13 2560701 2561577 -99311592 - L2 LINE L2 -26 3287 2287 275 327 98 72 chr13 2561759 2562105 -99311064 - L2 LINE L2 -55 3217 2863 2132 112 3 7 chr13 2562163 2562459 -99310710 + AluSg SINE Alu 1 295 -15 257 322 39 17 chr13 2562544 2562724 -99310445 + HAL1 LINE L1 223 406 -2101 1441 96 0 0 chr13 2562811 2563019 -99310150 + L1P3 LINE L1 1084 1291 -5170 1683 66 0 0 chr13 2563023 2563251 -99309918 + L1P LINE L1 3500 3727 -2419 27 62 0 0 chr13 2563353 2563401 -99309768 + AT_rich Low_complexity Low_complexity 1 48 0 285 228 0 0 chr13 2564681 2564738 -99308431 + MER5A DNA MER1_type 132 188 -1 2465 80 0 0 chr13 2565507 2565809 -99307360 + AluY SINE Alu 1 302 -9 251 353 26 0 chr13 2566853 2566941 -99306228 + MIR SINE MIR 59 146 -62 204 100 320 0 chr13 2566957 2567007 -99306162 - MER5C DNA MER1_type -5 319 254 206 320 120 0 chr13 2567070 2567170 -99305999 - MER5C DNA MER1_type -208 116 5 314 218 78 97 chr13 2567494 2567751 -99305418 - L1ME4a LINE L1 -34 6087 5836 201 186 17 68 chr13 2568259 2568318 -99304851 + T-rich Low_complexity Low_complexity 6 61 0 1071 76 0 0 chr13 2568320 2568451 -99304718 - AluSg SINE Alu -179 131 1 401 219 0 0 chr13 2568455 2568537 -99304632 + MER69 DNA AcHobo 2443 2524 -2 246 386 53 12 chr13 2568580 2568751 -99304418 + L2 LINE L2 1789 1966 -1348 2342 90 0 7 chr13 2570134 2570433 -99302736 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 2571233 2571256 -99301913 + (T)n Simple_repeat Simple_repeat 1 23 0 432 299 47 0 chr13 2572631 2572758 -99300411 - L2 LINE L2 -1 3312 3180 980 212 161 20 chr13 2573307 2573599 -99299570 - MER46C DNA MER2_type -1 337 5 207 0 0 0 chr13 2575412 2575435 -99297734 + (TA)n Simple_repeat Simple_repeat 2 24 0 2297 66 49 0 chr13 2575435 2575722 -99297447 - AluY SINE Alu -10 301 1 1476 230 33 9 chr13 2576287 2576618 -99296551 - MER58B DNA MER1_type -2 339 1 524 241 43 0 chr13 2576971 2577112 -99296057 + MIR SINE MIR 92 238 -24 486 342 5 5 chr13 2577342 2577529 -99295640 + MARNA DNA Mariner 43 229 -357 234 207 0 17 chr13 2577535 2577593 -99295576 - L1MCa LINE L1 -4363 2063 2007 326 325 31 19 chr13 2578743 2578903 -99294266 - L2 LINE L2 -1370 1944 1783 2016 194 54 71 chr13 2578956 2579476 -99293693 - MER9 LTR ERVK 0 511 1 25497 171 19 15 chr13 2579476 2584708 -99288461 - HERVK9 LTR ERVK 0 7321 1626 3235 164 38 53 chr13 2584694 2585617 -99287552 - HERVK9 LTR ERVK -5046 899 1 * 2152 186 58 44 chr13 2585617 2586121 -99287048 - MER9 LTR ERVK 0 511 1 328 240 132 83 chr13 2586125 2586298 -99286871 + L1MC/D LINE L1 5448 5642 -2166 2137 118 0 30 chr13 2586298 2586603 -99286566 + AluSx SINE Alu 1 296 -16 328 240 132 83 chr13 2586603 2586717 -99286452 + L1MC/D LINE L1 5642 5749 -2059 518 181 0 0 chr13 2587630 2587713 -99285456 - FRAM/FAM SINE Alu -94 82 1 243 0 0 0 chr13 2587732 2587759 -99285410 + (A)n Simple_repeat Simple_repeat 1 27 0 347 283 44 44 chr13 2588167 2588280 -99284889 + MIR SINE MIR 29 141 -67 310 294 35 12 chr13 2588386 2588471 -99284698 + L1MA4A LINE L1 834 920 -5929 13694 181 82 12 chr13 2588471 2588506 -99284663 + L1MA4A LINE L1 2081 2112 -4893 1481 130 123 53 chr13 2588506 2588790 -99284379 - AluSg SINE Alu -6 304 1 13694 181 82 12 chr13 2588790 2593336 -99279833 + L1MA4A LINE L1 2112 6982 -23 2471 245 128 50 chr13 2593331 2593697 -99279472 + HAL1 LINE L1 1171 1507 -1000 * 774 197 31 0 chr13 2593697 2593824 -99279345 - FLAM_A SINE Alu -2 131 1 2471 245 128 50 chr13 2593824 2594390 -99278779 + HAL1 LINE L1 1507 2220 -287 2131 133 3 3 chr13 2594390 2594698 -99278471 + AluSx SINE Alu 1 308 -4 2471 245 128 50 chr13 2594698 2594966 -99278203 + HAL1 LINE L1 2220 2466 -41 2380 58 7 3 chr13 2594966 2595261 -99277908 - AluY SINE Alu -15 296 1 401 219 0 0 chr13 2595265 2595347 -99277822 + MER69 DNA AcHobo 2443 2524 -2 246 386 53 12 chr13 2595390 2595561 -99277608 + L2 LINE L2 1789 1966 -1348 2271 97 0 10 chr13 2596944 2597244 -99275925 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 2598044 2598067 -99275102 + (T)n Simple_repeat Simple_repeat 1 23 0 432 299 47 0 chr13 2599442 2599569 -99273600 - L2 LINE L2 -1 3312 3180 407 200 13 0 chr13 2600118 2600193 -99272976 - MER46C DNA MER2_type -1 337 262 1257 156 66 5 chr13 2600299 2600511 -99272658 - AluJb SINE Alu -3 309 85 602 230 15 50 chr13 2600513 2600713 -99272456 - L1M4 LINE L1 -2091 4055 3863 681 140 5 10 chr13 2600719 2600984 -99272185 - AluJb SINE Alu 0 312 1 484 263 79 44 chr13 2600987 2601215 -99271954 - L1M4 LINE L1 -2286 3860 3625 422 219 0 0 chr13 2602024 2602106 -99271063 - FRAM/FAM SINE Alu -95 81 1 234 0 0 0 chr13 2602126 2602152 -99271017 + (A)n Simple_repeat Simple_repeat 1 26 0 513 260 47 39 chr13 2602560 2602687 -99270482 + MIR3 SINE MIR 29 156 -52 745 321 87 44 chr13 2602864 2603156 -99270013 + L1MEd LINE L1 78 356 -5763 2211 82 0 36 chr13 2603156 2603459 -99269710 + AluSq SINE Alu 1 292 -21 745 321 87 44 chr13 2603459 2603708 -99269461 + L1MEd LINE L1 356 642 -5477 890 233 17 0 chr13 2603835 2604011 -99269158 - AluJo SINE Alu -17 295 117 23 0 0 0 chr13 2604018 2604041 -99269128 + AT_rich Low_complexity Low_complexity 1 23 0 2184 109 3 0 chr13 2604041 2604334 -99268835 - AluSg SINE Alu -16 294 1 199 365 17 26 chr13 2605397 2605512 -99267657 - L3 LINE CR1 -81 1496 1383 276 228 158 10 chr13 2606564 2606665 -99266504 + MER112 DNA MER1_type 101 216 -44 1517 290 119 58 chr13 2607203 2607328 -99265841 - L2 LINE L2 -11 3302 3186 2103 115 10 10 chr13 2607328 2607632 -99265537 - AluSg SINE Alu -6 304 1 1517 290 119 58 chr13 2607632 2608650 -99264519 - L2 LINE L2 -127 3186 2047 749 47 0 0 chr13 2608812 2608898 -99264271 - AluSg/x SINE Alu -8 304 219 2073 69 0 36 chr13 2608898 2609173 -99263996 - AluSg1 SINE Alu -44 265 1 1984 144 20 0 chr13 2609561 2609853 -99263316 + AluSx SINE Alu 1 298 -14 1777 144 30 4 chr13 2610044 2610315 -99262854 + AluJo SINE Alu 1 278 -34 1190 257 121 66 chr13 2610315 2610467 -99262702 + L1MCc LINE L1 1177 1319 -5803 2369 75 0 3 chr13 2610467 2610762 -99262407 + AluY SINE Alu 1 294 -17 1190 257 121 66 chr13 2610762 2611547 -99261622 + L1MCc LINE L1 1319 2423 -4699 2172 87 31 3 chr13 2611547 2611835 -99261334 + AluSx SINE Alu 1 296 -16 1190 257 121 66 chr13 2611835 2612105 -99261064 + L1MCc LINE L1 2423 2677 -4445 1839 171 0 0 chr13 2612231 2612523 -99260646 + AluJo SINE Alu 1 292 -20 1885 212 74 4 chr13 2612529 2613001 -99260168 + L1MC4 LINE L1 7122 7626 -416 1816 162 7 10 chr13 2613003 2613300 -99259869 + AluSx SINE Alu 1 296 -16 644 183 7 0 chr13 2613300 2613437 -99259732 + GA-rich Low_complexity Low_complexity 1 138 0 201 111 0 0 chr13 2613437 2613464 -99259705 + (GGGGA)n Simple_repeat Simple_repeat 3 29 0 476 237 17 0 chr13 2613464 2613582 -99259587 + L1MC4 LINE L1 7613 7732 -310 457 202 36 0 chr13 2613588 2613672 -99259497 - Tigger5 DNA MER2_type 0 2323 2237 374 167 28 14 chr13 2613726 2613798 -99259371 - Tigger5 DNA MER2_type 0 2323 2251 257 226 19 0 chr13 2613768 2613821 -99259348 - Tigger5 DNA MER2_type -2268 55 2 * 1015 215 98 7 chr13 2613823 2614110 -99259059 + L1MC4 LINE L1 7741 8041 -1 1007 190 0 0 chr13 2614117 2614291 -99258878 + FRAM SINE Alu 1 172 -4 442 237 20 33 chr13 2614294 2614446 -99258723 + L1MCc LINE L1 2837 2986 -4136 602 209 44 21 chr13 2614486 2614616 -99258553 + L1M1 LINE L1 3537 3671 -3894 1769 159 72 30 chr13 2614616 2614950 -99258219 + MER7A DNA MER2_type 1 346 0 602 209 44 21 chr13 2614950 2614991 -99258178 + L1M1 LINE L1 3671 3710 -3855 2051 134 3 13 chr13 2615004 2615310 -99257859 + AluSx SINE Alu 1 303 -9 683 329 175 14 chr13 2615363 2616127 -99257042 - L2 LINE L2 -1796 1518 573 2351 80 10 13 chr13 2616157 2616459 -99256710 - AluSg SINE Alu 0 310 1 202 306 116 16 chr13 2618040 2618161 -99255008 - L3 LINE CR1 -139 1438 1306 23 54 0 0 chr13 2618802 2618839 -99254330 + GC_rich Low_complexity Low_complexity 1 37 0 201 183 32 65 chr13 2618841 2618934 -99254235 + G-rich Low_complexity Low_complexity 3 92 0 31 82 0 0 chr13 2618983 2619056 -99254113 + GC_rich Low_complexity Low_complexity 1 73 0 38 61 0 0 chr13 2619144 2619210 -99253959 + GC_rich Low_complexity Low_complexity 1 66 0 305 223 33 12 chr13 2619414 2619665 -99253504 + (CGGGG)n Simple_repeat Simple_repeat 1 256 0 1742 168 10 7 chr13 2620533 2620825 -99252344 + AluJo SINE Alu 16 308 -4 210 321 179 28 chr13 2621595 2621807 -99251362 - L2 LINE L2 -849 2465 2222 1502 170 93 14 chr13 2622284 2622573 -99250596 + AluJb SINE Alu 1 312 0 1636 187 7 14 chr13 2622633 2622927 -99250242 - AluJb SINE Alu -20 292 1 2203 138 0 0 chr13 2623013 2623311 -99249858 - AluSx SINE Alu -10 302 5 306 332 108 13 chr13 2623504 2623820 -99249349 + L1MC4a LINE L1 4965 5310 -836 1653 92 176 44 chr13 2623820 2624093 -99249076 + AluSg1 SINE Alu 1 309 0 691 281 204 18 chr13 2624280 2624672 -99248497 + L1MC4a LINE L1 5495 5959 -1849 2421 80 0 46 chr13 2625434 2625759 -99247410 + AluSp SINE Alu 1 310 -3 681 186 106 53 chr13 2626017 2626085 -99247084 - MSTD LTR MaLR 0 396 333 2372 104 3 0 chr13 2626085 2626383 -99246786 + AluSp SINE Alu 1 299 -14 681 186 106 53 chr13 2626383 2626502 -99246667 - MSTD LTR MaLR -63 333 199 501 159 53 18 chr13 2626531 2626644 -99246525 - MSTD LTR MaLR -279 117 1 235 290 29 0 chr13 2626924 2626993 -99246176 + L1MC/D LINE L1 5713 5783 -2025 2308 86 3 7 chr13 2627408 2627700 -99245469 + AluSx SINE Alu 1 291 -21 526 194 31 0 chr13 2627979 2628108 -99245061 + CT-rich Low_complexity Low_complexity 4 136 0 219 271 4 4 chr13 2629546 2629620 -99243549 + MIR SINE MIR 79 153 -55 493 209 15 45 chr13 2630269 2630403 -99242766 + MER5B DNA MER1_type 8 137 -41 217 274 208 19 chr13 2630681 2630787 -99242382 - MER5A DNA MER1_type 0 189 64 1893 116 65 34 chr13 2630843 2631137 -99242032 - AluJb SINE Alu -9 303 1 247 319 0 14 chr13 2631137 2631209 -99241960 - MER5A DNA MER1_type -114 75 5 547 248 35 25 chr13 2631318 2631516 -99241653 - L1M4 LINE L1 -1379 4767 4568 247 289 158 9 chr13 2631630 2631744 -99241425 - MIR3 SINE MIR -46 162 32 349 363 0 11 chr13 2633444 2633623 -99239546 + (CACG)n Simple_repeat Simple_repeat 1 177 0 * 489 309 3 0 chr13 2633492 2634134 -99239035 + (CA)n Simple_repeat Simple_repeat 1 643 0 427 333 3 3 chr13 2634155 2634476 -99238693 + (CA)n Simple_repeat Simple_repeat 1 321 0 301 274 76 6 chr13 2634433 2634590 -99238579 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 440 297 108 19 chr13 2634668 2634880 -99238289 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 2635749 2635827 -99237342 + L2 LINE L2 2420 2498 -816 2653 33 0 3 chr13 2638751 2639053 -99234116 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 2639501 2639611 -99233558 + MIR SINE MIR 103 232 -30 2407 92 0 7 chr13 2639816 2640119 -99233050 + AluSq SINE Alu 1 301 -12 2171 88 3 63 chr13 2640119 2640436 -99232733 + AluSg SINE Alu 1 298 -12 2349 108 0 0 chr13 2642026 2642322 -99230847 - AluSq SINE Alu -12 301 6 1962 138 3 39 chr13 2642611 2642923 -99230246 - AluJb SINE Alu -11 301 1 1245 248 69 7 chr13 2643008 2643465 -99229704 - L1MD2 LINE L1 -12 6347 5835 293 295 67 9 chr13 2643879 2643984 -99229185 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 2644592 2644636 -99228533 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 2645246 2645269 -99227900 + AT_rich Low_complexity Low_complexity 1 23 0 554 165 29 0 chr13 2645616 2645719 -99227450 - AluJ SINE Alu -17 295 190 258 231 0 0 chr13 2645722 2645774 -99227395 + LTR30 LTR ERV1 1 52 -670 2802 127 18 9 chr13 2645778 2646235 -99226934 + LTR12 LTR ERV1 123 583 -131 646 215 37 0 chr13 2646236 2646371 -99226798 - AluJ SINE Alu -125 187 48 430 213 11 11 chr13 2646424 2646518 -99226651 + FRAM SINE Alu 1 93 -83 235 354 0 0 chr13 2646581 2646660 -99226509 + MIR3 SINE MIR 82 160 -48 522 291 101 11 chr13 2646688 2646877 -99226292 - MIR SINE MIR 0 262 57 2292 93 7 10 chr13 2647438 2647739 -99225430 - AluSx SINE Alu -12 300 1 2430 96 0 0 chr13 2648201 2648502 -99224667 - AluSg SINE Alu -9 301 1 534 189 117 0 chr13 2648510 2648621 -99224548 - AluJb SINE Alu -188 124 1 315 262 139 25 chr13 2648621 2648743 -99224426 + L1MC4a LINE L1 5778 5913 -1895 380 260 38 46 chr13 2649182 2649399 -99223770 + L1MEc LINE L1 1854 2040 -4500 578 315 46 0 chr13 2649454 2649673 -99223496 + MIR SINE MIR 34 262 0 893 71 0 0 chr13 2649677 2649824 -99223345 - Alu SINE Alu 0 315 169 2038 276 131 21 chr13 2650017 2651817 -99221352 + HAL1 LINE L1 1 2023 -484 597 82 0 0 chr13 2651835 2651920 -99221249 - AluY SINE Alu -8 303 219 303 328 12 12 chr13 2652040 2652211 -99220958 + (CCCA)n Simple_repeat Simple_repeat 3 173 0 * 427 315 6 0 chr13 2652123 2652301 -99220868 + (CA)n Simple_repeat Simple_repeat 1 179 0 301 274 76 6 chr13 2652258 2652415 -99220754 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 * 440 297 108 19 chr13 2652493 2652705 -99220464 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 2653573 2653651 -99219518 + L2 LINE L2 2420 2498 -816 2688 33 0 0 chr13 2656575 2656876 -99216293 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 2657324 2657434 -99215735 + MIR SINE MIR 103 232 -30 2407 92 0 7 chr13 2657639 2657942 -99215227 + AluSq SINE Alu 1 301 -12 2171 88 3 63 chr13 2657942 2658259 -99214910 + AluSg SINE Alu 1 298 -12 2184 114 7 0 chr13 2659849 2660138 -99213031 - AluSq SINE Alu -12 301 11 1962 138 3 39 chr13 2660434 2660746 -99212423 - AluJb SINE Alu -11 301 1 1245 248 69 7 chr13 2660831 2661288 -99211881 - L1MD2 LINE L1 -12 6347 5835 293 295 67 9 chr13 2661701 2661806 -99211363 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 2662414 2662458 -99210711 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 2663068 2663091 -99210078 + AT_rich Low_complexity Low_complexity 1 23 0 554 165 29 0 chr13 2663438 2663541 -99209628 - AluJ SINE Alu -17 295 190 258 231 0 0 chr13 2663544 2663596 -99209573 + LTR30 LTR ERV1 1 52 -670 2802 127 18 9 chr13 2663600 2664057 -99209112 + LTR12 LTR ERV1 123 583 -131 646 215 37 0 chr13 2664058 2664193 -99208976 - AluJ SINE Alu -125 187 48 430 213 11 11 chr13 2664246 2664340 -99208829 + FRAM SINE Alu 1 93 -83 235 354 0 0 chr13 2664403 2664482 -99208687 + MIR3 SINE MIR 82 160 -48 532 289 95 11 chr13 2664510 2664700 -99208469 - MIR SINE MIR 0 262 57 2292 93 7 10 chr13 2665263 2665564 -99207605 - AluSx SINE Alu -12 300 1 2389 92 0 3 chr13 2666026 2666330 -99206839 - AluSx SINE Alu -9 303 1 4040 200 78 33 chr13 2666331 2666589 -99206580 + L1MB7 LINE L1 4095 4340 -1844 1077 141 77 0 chr13 2666589 2666759 -99206410 + U2 snRNA snRNA 5 187 -1 4040 200 78 33 chr13 2666759 2668200 -99204969 + L1MB7 LINE L1 4340 5901 -283 417 81 242 0 chr13 2668200 2668262 -99204907 - MADE1 DNA Mariner 0 80 4 4040 200 78 33 chr13 2668262 2668560 -99204609 + L1MB7 LINE L1 5901 6184 0 575 221 58 0 chr13 2668557 2668711 -99204458 + L1M4 LINE L1 3758 3920 -2226 * 307 221 96 10 chr13 2668701 2668805 -99204364 - L1M4 LINE L1 -2154 3992 3880 * 1652 198 121 5 chr13 2668783 2669188 -99203981 + L1MD1 LINE L1 5783 6234 -8 2457 82 0 0 chr13 2669232 2669538 -99203631 - AluY SINE Alu -5 306 1 233 190 0 35 chr13 2669748 2669806 -99203363 - L1MC4 LINE L1 -1339 6703 6648 26 50 0 0 chr13 2670339 2670379 -99202790 + AT_rich Low_complexity Low_complexity 1 40 0 3088 175 30 25 chr13 2670513 2671103 -99202066 + MER7C DNA MER2_type 10 602 0 1398 141 77 12 chr13 2671103 2671350 -99201819 - Tigger3(Golem) DNA MER2_type -2744 285 23 1347 94 0 0 chr13 2671360 2671541 -99201628 - AluY SINE Alu -4 307 127 879 195 39 66 chr13 2672540 2672796 -99200373 + L1MC5 LINE L1 7176 7424 -537 1783 194 38 3 chr13 2673114 2673455 -99199714 + L1MB7 LINE L1 5730 6082 -102 4771 112 12 155 chr13 2673455 2675029 -99198140 - pTR5 LTR ERV1 0 2606 1524 520 53 11 117 chr13 2675037 2675066 -99198103 + L1MB7 LINE L1 6089 6119 -65 2134 107 3 3 chr13 2675066 2675357 -99197812 + AluSg SINE Alu 2 292 -18 520 53 11 117 chr13 2675357 2675421 -99197748 + L1MB7 LINE L1 6119 6172 -12 2391 91 3 0 chr13 2675999 2676295 -99196874 - AluSc SINE Alu -12 297 1 575 253 35 29 chr13 2676542 2676716 -99196453 - L1MC4 LINE L1 -2085 5723 5549 266 264 86 0 chr13 2676730 2676893 -99196276 - L1MC4 LINE L1 -723 5439 5263 1121 256 20 8 chr13 2676924 2677401 -99195768 + MER90 LTR ERV1 74 614 0 324 248 95 22 chr13 2677401 2677538 -99195631 - L1MC4 LINE L1 -881 5265 5119 2104 139 0 16 chr13 2677592 2677908 -99195261 - AluSx SINE Alu -1 311 1 187 278 0 37 chr13 2678010 2678064 -99195105 + L2 LINE L2 3008 3059 -213 7647 95 8 6 chr13 2678208 2680037 -99193132 - L1PA8 LINE L1 0 6172 4340 2356 110 0 0 chr13 2680109 2680418 -99192751 + AluSg1 SINE Alu 1 309 0 2193 113 0 3 chr13 2680699 2680991 -99192178 - AluSg SINE Alu -19 291 1 2397 81 3 0 chr13 2682000 2682296 -99190873 - AluSx SINE Alu -7 305 9 2382 38 11 3 chr13 2682694 2682981 -99190188 + AluY SINE Alu 1 289 -22 1314 193 60 60 chr13 2734018 2734172 -99138997 + MER58B DNA MER1_type 11 164 -2256 2273 110 0 0 chr13 2734172 2734472 -99138697 - AluSp SINE Alu -13 300 1 1314 193 60 60 chr13 2734472 2734648 -99138521 + MER58B DNA MER1_type 163 341 0 21 36 0 0 chr13 2734998 2735026 -99138143 + AT_rich Low_complexity Low_complexity 1 28 0 362 289 134 25 chr13 2735252 2735491 -99137678 - L2 LINE L2 -824 2490 2226 1907 223 60 10 chr13 2736796 2737293 -99135876 + Charlie1b DNA MER1_type 2 523 0 2026 111 19 26 chr13 2738391 2738698 -99134471 + AluSx SINE Alu 1 305 -7 276 185 420 17 chr13 2739344 2739463 -99133706 + L1MC5 LINE L1 7747 7913 -48 797 159 0 15 chr13 2739561 2739693 -99133476 - FLAM_C SINE Alu -3 130 1 21 0 0 0 chr13 2739847 2739868 -99133301 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 2741705 2741728 -99131441 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 2742239 2742264 -99130905 + (T)n Simple_repeat Simple_repeat 1 25 0 31 0 0 0 chr13 2743626 2743657 -99129512 + AT_rich Low_complexity Low_complexity 1 31 0 214 337 117 42 chr13 2743657 2743756 -99129413 - L2 LINE L2 -36 3236 3146 1119 188 119 50 chr13 2743756 2744076 -99129093 + MER2 DNA MER2_type 3 344 0 214 337 117 42 chr13 2744076 2744285 -99128884 - L2 LINE L2 -126 3146 2905 478 187 134 0 chr13 2744683 2744817 -99128352 + L1M4 LINE L1 4263 4414 -1732 1034 194 45 5 chr13 2744818 2745019 -99128150 + AluJb SINE Alu 84 292 -20 1752 174 7 7 chr13 2745114 2745396 -99127773 + AluJb SINE Alu 1 282 -30 23 0 0 0 chr13 2745396 2745419 -99127750 + AT_rich Low_complexity Low_complexity 1 23 0 717 220 13 13 chr13 2745437 2745596 -99127573 - FRAM SINE Alu -11 165 7 21 36 0 0 chr13 2745762 2745790 -99127379 + AT_rich Low_complexity Low_complexity 1 28 0 395 100 0 0 chr13 2746127 2746177 -99126992 - MER8 DNA MER2_type 0 239 190 * 2398 148 39 11 chr13 2746172 2746610 -99126559 + Tigger2 DNA MER2_type 2269 2718 0 2374 164 25 39 chr13 2747088 2747601 -99125568 - L1MB8 LINE L1 -1 6177 5672 889 186 45 45 chr13 2747603 2747802 -99125367 - MER20 DNA MER1_type -20 199 1 1651 167 25 41 chr13 2747822 2748026 -99125143 - AluSx SINE Alu 0 312 113 1952 125 24 53 chr13 2748026 2748401 -99124768 - THE1B LTR MaLR 0 364 1 1651 167 25 41 chr13 2748401 2748513 -99124656 - AluSx SINE Alu -199 113 1 1488 203 119 21 chr13 2748908 2749489 -99123680 - Charlie2 DNA MER1_type -322 2540 1903 240 250 111 9 chr13 2749527 2749635 -99123534 - Charlie2 DNA MER1_type -2544 318 200 2118 115 60 3 chr13 2750020 2750351 -99122818 + MER41C LTR ERV1 1 350 -204 456 151 24 24 chr13 2750351 2750477 -99122692 + (TA)n Simple_repeat Simple_repeat 1 126 0 1052 138 76 57 chr13 2750486 2750696 -99122473 + MER41C LTR ERV1 341 554 0 1326 269 116 14 chr13 2751057 2751163 -99122006 + L2 LINE L2 2552 2646 -667 1952 126 13 23 chr13 2751163 2751472 -99121697 - AluSx SINE Alu -6 306 1 1326 269 116 14 chr13 2751472 2752046 -99121123 + L2 LINE L2 2646 3307 -6 2421 89 0 0 chr13 2752768 2753072 -99120097 - AluSc SINE Alu -5 304 1 573 291 0 7 chr13 2754241 2754389 -99118780 + MIR SINE MIR 6 152 -110 611 274 185 71 chr13 2757287 2757506 -99115663 - L2 LINE L2 -372 2942 2749 2191 128 0 0 chr13 2757506 2757812 -99115357 - AluSx SINE Alu -6 306 1 611 274 185 71 chr13 2757812 2758253 -99114916 - L2 LINE L2 -565 2749 2207 1665 120 0 0 chr13 2758315 2758532 -99114637 + AluSq SINE Alu 3 219 -94 275 200 71 24 chr13 2758571 2758656 -99114513 + L1 LINE L1 4882 4970 -1176 1369 174 4 4 chr13 2758827 2759069 -99114100 + L1MD3 LINE L1 7732 7973 -22 512 287 125 23 chr13 2759108 2759144 -99114025 + L1MC1 LINE L1 5188 5219 -1178 1530 125 225 36 chr13 2759144 2759504 -99113665 - MSTA LTR MaLR 0 428 1 512 287 125 23 chr13 2759504 2759885 -99113284 + L1MC1 LINE L1 5219 5649 -748 2142 144 0 0 chr13 2759900 2760199 -99112970 + AluSx SINE Alu 1 299 -13 2047 135 75 28 chr13 2761300 2761700 -99111469 + L1MC1 LINE L1 5906 6324 -9 1711 148 47 7 chr13 2764028 2764305 -99108864 - AluSx SINE Alu -23 289 2 38 51 0 0 chr13 2764823 2764882 -99108287 + AT_rich Low_complexity Low_complexity 1 59 0 2130 110 0 7 chr13 2765044 2765343 -99107826 - AluSq SINE Alu -16 297 1 2322 89 0 0 chr13 2765600 2765891 -99107278 + AluSg SINE Alu 1 291 -19 22 35 0 0 chr13 2766266 2766295 -99106874 + AT_rich Low_complexity Low_complexity 1 29 0 390 224 0 0 chr13 2767468 2767535 -99105634 - MER58A DNA MER1_type -39 68 2 2045 167 129 21 chr13 2767906 2767989 -99105180 + MLT1C LTR MaLR 1 74 -393 2143 111 24 0 chr13 2767989 2768278 -99104891 + AluSx SINE Alu 1 296 -16 2045 167 129 21 chr13 2768278 2768614 -99104555 + MLT1C LTR MaLR 74 465 -2 2052 143 0 13 chr13 2768856 2769170 -99103999 + AluSx SINE Alu 1 310 -2 183 156 0 0 chr13 2769501 2769533 -99103636 + (CATA)n Simple_repeat Simple_repeat 3 34 0 508 288 93 42 chr13 2769595 2769810 -99103359 + MIR SINE MIR 23 248 -14 1588 213 7 7 chr13 2772181 2772477 -99100692 - AluJb SINE Alu -16 296 1 283 260 40 0 chr13 2772681 2772781 -99100388 - Charlie2 DNA MER1_type -158 2704 2601 2400 88 0 3 chr13 2773040 2773346 -99099823 - AluSg SINE Alu 0 310 6 2454 77 0 3 chr13 2773397 2773707 -99099462 + AluY SINE Alu 1 309 -2 654 153 0 0 chr13 2773716 2773814 -99099355 - FRAM SINE Alu -37 139 42 2565 142 42 35 chr13 2773814 2774055 -99099114 + L1MB8 LINE L1 5649 5887 -291 1950 129 3 3 chr13 2774055 2774341 -99098828 + AluSx SINE Alu 5 290 -22 2565 142 42 35 chr13 2774341 2774620 -99098549 + L1MB8 LINE L1 5887 6173 -5 828 167 0 35 chr13 2774626 2774770 -99098399 + AluJo SINE Alu 3 141 -171 2058 145 3 3 chr13 2774770 2775080 -99098089 + AluSx SINE Alu 1 310 -2 1787 154 11 4 chr13 2775267 2775576 -99097593 - AluJb SINE Alu 0 312 2 468 192 10 39 chr13 2776323 2776427 -99096742 + MER31A LTR ERV1 353 453 -32 438 223 194 23 chr13 2777094 2777262 -99095907 - MIR SINE MIR -16 246 41 2026 120 7 7 chr13 2779955 2780247 -99092922 + AluSx SINE Alu 1 292 -20 240 259 116 0 chr13 2781746 2781858 -99091311 - L1ME4a LINE L1 -65 6056 5932 26 64 0 0 chr13 2783273 2783320 -99089849 + AT_rich Low_complexity Low_complexity 1 47 0 259 276 95 48 chr13 2783373 2783478 -99089691 + MIR SINE MIR 38 147 -61 2193 117 0 0 chr13 2784889 2785179 -99087990 + AluSx SINE Alu 1 290 -22 443 250 132 7 chr13 2785359 2785495 -99087674 - MIR SINE MIR -108 154 2 1436 198 59 7 chr13 2785563 2785851 -99087318 + AluJo SINE Alu 1 303 -9 1611 186 26 10 chr13 2786498 2786804 -99086365 + AluJb SINE Alu 1 311 -1 207 193 23 45 chr13 2787635 2787723 -99085446 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chr13 2787913 2787942 -99085227 + AT_rich Low_complexity Low_complexity 1 29 0 1821 139 16 32 chr13 2788115 2788425 -99084744 + AluJb SINE Alu 1 305 -7 532 187 41 57 chr13 2788436 2788559 -99084610 + FRAM SINE Alu 2 122 -54 930 176 29 29 chr13 2788787 2788992 -99084177 - MER3 DNA MER1_type -3 206 2 352 300 25 0 chr13 2789058 2789178 -99083991 + L1ME1 LINE L1 6039 6161 -5 25 75 0 0 chr13 2790111 2790164 -99083005 + AT_rich Low_complexity Low_complexity 1 53 0 2262 102 3 3 chr13 2790246 2790550 -99082619 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr13 2790655 2790684 -99082485 + AT_rich Low_complexity Low_complexity 1 29 0 645 271 134 4 chr13 2790945 2791172 -99081997 + MIR SINE MIR 6 256 -6 376 269 32 0 chr13 2791671 2791764 -99081405 - MER94 DNA DNA -15 119 24 198 274 0 95 chr13 2792020 2792104 -99081065 + L2 LINE L2 3197 3272 0 398 234 183 77 chr13 2792388 2792519 -99080650 - MIR SINE MIR 0 262 146 2450 64 0 0 chr13 2792519 2792817 -99080352 + AluY SINE Alu 1 298 -13 398 234 183 77 chr13 2792817 2792920 -99080249 - MIR SINE MIR -116 146 3 284 228 354 6 chr13 2793081 2793239 -99079930 + L1MC4 LINE L1 7466 7678 -364 386 261 54 8 chr13 2793425 2793555 -99079614 + L1MC4 LINE L1 7817 7952 -90 284 211 0 0 chr13 2793585 2793637 -99079532 + FAM SINE Alu 116 167 -12 2204 118 0 3 chr13 2793663 2793968 -99079201 + AluSg SINE Alu 1 304 -6 345 100 0 0 chr13 2793973 2794023 -99079146 + (TA)n Simple_repeat Simple_repeat 2 51 0 732 165 0 31 chr13 2794123 2794250 -99078919 + FLAM_C SINE Alu 1 123 -10 2210 93 6 19 chr13 2794260 2794392 -99078777 + AluSc SINE Alu 1 133 -176 2341 97 0 0 chr13 2794392 2794701 -99078468 + AluY SINE Alu 1 309 -2 2210 93 6 19 chr13 2794701 2794879 -99078290 + AluSc SINE Alu 133 307 -2 354 255 121 13 chr13 2795147 2795296 -99077873 - MIR SINE MIR -21 241 77 21 57 0 0 chr13 2795397 2795432 -99077737 + AT_rich Low_complexity Low_complexity 1 35 0 2167 144 0 0 chr13 2796363 2796669 -99076500 - AluSx SINE Alu -6 306 1 2226 115 0 10 chr13 2796844 2797156 -99076013 - AluSc SINE Alu 0 309 1 785 154 22 7 chr13 2797555 2797691 -99075478 - FLAM_C SINE Alu -1 142 5 29 0 0 0 chr13 2798210 2798239 -99074930 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 2799210 2799239 -99073930 + AT_rich Low_complexity Low_complexity 1 29 0 239 374 40 0 chr13 2799542 2799641 -99073528 - MIR3 SINE MIR -34 174 72 2309 101 7 0 chr13 2800209 2800506 -99072663 - AluSp SINE Alu -14 299 1 202 219 27 27 chr13 2801324 2801397 -99071772 + A-rich Low_complexity Low_complexity 5 77 0 240 196 61 20 chr13 2802549 2802645 -99070524 - MIR SINE MIR -72 136 81 21 0 0 0 chr13 2803632 2803653 -99069516 + AT_rich Low_complexity Low_complexity 1 21 0 1786 125 59 7 chr13 2805171 2805459 -99067710 + AluSx SINE Alu 1 303 -9 1957 127 0 20 chr13 2805498 2805797 -99067372 + AluSx SINE Alu 5 297 -15 1845 127 76 0 chr13 2805817 2806092 -99067077 + AluSx SINE Alu 1 296 -16 1841 166 17 0 chr13 2806155 2806456 -99066713 - AluJb SINE Alu -6 306 1 626 201 174 0 chr13 2806517 2806666 -99066503 - AluSg/x SINE Alu 0 310 136 1093 177 5 0 chr13 2806668 2806854 -99066315 - AluJo SINE Alu -12 300 114 240 162 0 0 chr13 2806858 2806895 -99066274 + Alu SINE Alu 6 42 -91 218 288 72 78 chr13 2807382 2807535 -99065634 - MER5A DNA MER1_type 0 189 38 218 245 41 0 chr13 2807847 2807896 -99065273 - MIR SINE MIR 0 262 212 879 200 35 0 chr13 2807960 2808130 -99065039 - MIR SINE MIR -70 192 17 370 292 102 0 chr13 2808728 2808865 -99064304 - L2 LINE L2 -8 3305 3155 1149 130 12 0 chr13 2808988 2809150 -99064019 - AluSg/x SINE Alu -19 293 130 645 283 88 4 chr13 2809221 2809447 -99063722 - MIR SINE MIR -2 260 16 1570 189 67 54 chr13 2809736 2810060 -99063109 + MSTD LTR MaLR 1 332 -64 2264 86 3 3 chr13 2810060 2810352 -99062817 + AluSx SINE Alu 1 292 -20 1570 189 67 54 chr13 2810352 2810418 -99062751 + MSTD LTR MaLR 332 396 0 199 308 0 31 chr13 2811062 2811127 -99062042 + MIR SINE MIR 30 92 -116 284 291 179 35 chr13 2811188 2811316 -99061853 + L1ME3 LINE L1 4561 4669 -1477 2064 119 6 44 chr13 2811316 2811636 -99061533 + AluSq SINE Alu 1 308 -5 284 291 179 35 chr13 2811636 2811992 -99061177 + L1ME3 LINE L1 4669 5115 -1031 2126 106 228 6 chr13 2812093 2812453 -99060716 - LTR12 LTR ERV1 -234 480 41 239 143 0 0 chr13 2812453 2812495 -99060674 - LTR30 LTR ERV1 -680 42 1 429 257 99 82 chr13 2812537 2812582 -99060587 + L1ME3 LINE L1 5258 5301 -863 757 289 65 59 chr13 2812582 2813088 -99060081 + MLT1J LTR MaLR 1 509 -2 429 257 99 82 chr13 2813088 2813276 -99059893 + L1ME3 LINE L1 5301 5484 -680 1400 177 130 0 chr13 2813276 2813530 -99059639 + AluSx SINE Alu 5 291 -21 429 257 99 82 chr13 2813530 2813962 -99059207 + L1ME3 LINE L1 5484 5939 -225 395 303 113 50 chr13 2814259 2814622 -99058547 + L1MEd LINE L1 88 473 -5732 255 227 163 23 chr13 2814871 2815043 -99058126 + L1MEd LINE L1 727 922 -5283 3327 165 88 63 chr13 2815064 2815503 -99057666 + L1MB3 LINE L1 5143 5569 -614 2443 73 0 3 chr13 2815503 2815806 -99057363 + AluSg SINE Alu 4 305 -5 3327 165 88 63 chr13 2815806 2816027 -99057142 + L1MB3 LINE L1 5569 5783 -400 1903 156 0 3 chr13 2816027 2816322 -99056847 + AluJb SINE Alu 5 298 -14 3327 165 88 63 chr13 2816322 2816595 -99056574 + L1MB3 LINE L1 5783 6099 -84 2359 88 0 7 chr13 2816623 2816918 -99056251 - AluY SINE Alu -18 293 1 334 229 73 37 chr13 2817001 2817110 -99056059 + L1ME3 LINE L1 6047 6159 -3 2245 131 0 6 chr13 2817174 2817488 -99055681 + AluSx SINE Alu 1 312 0 1953 157 130 3 chr13 2817559 2817935 -99055234 - MSTB LTR MaLR -2 424 1 2133 119 7 0 chr13 2817954 2818249 -99054920 + AluSq SINE Alu 1 297 -16 239 276 0 26 chr13 2818276 2818352 -99054817 + LTR33 LTR ERVL 41 114 -407 367 195 87 60 chr13 2818445 2818594 -99054575 + LTR33 LTR ERVL 369 521 0 580 286 83 25 chr13 2818662 2819061 -99054108 + L1MEd LINE L1 1317 1738 -4658 2324 91 7 0 chr13 2819116 2819414 -99053755 - AluSp SINE Alu -13 300 1 1385 179 31 45 chr13 2819441 2819732 -99053437 + AluJb SINE Alu 1 287 -25 360 119 0 0 chr13 2819734 2819793 -99053376 + (CAATC)n Simple_repeat Simple_repeat 2 60 0 1570 175 4 15 chr13 2819793 2820061 -99053108 - AluJb SINE Alu -47 265 1 693 215 0 15 chr13 2820085 2820220 -99052949 + FRAM SINE Alu 34 166 -10 2104 82 50 7 chr13 2820290 2820598 -99052571 - AluSp SINE Alu 0 313 1 351 283 66 11 chr13 2820670 2821005 -99052164 + L1MEd LINE L1 2033 2360 -3855 684 200 0 0 chr13 2821013 2821128 -99052041 + FLAM_C SINE Alu 9 123 -20 305 322 54 20 chr13 2821461 2821610 -99051559 + L1MEd LINE L1 2746 2899 -3316 305 186 186 85 chr13 2821634 2821680 -99051489 + L1MEd LINE L1 3201 3241 -2974 1919 139 10 10 chr13 2821680 2821981 -99051188 + AluSx SINE Alu 1 301 -11 305 186 186 85 chr13 2821981 2822133 -99051036 + L1MEd LINE L1 3241 3419 -2796 2382 86 13 0 chr13 2822141 2822443 -99050726 + AluSp SINE Alu 1 306 -7 332 272 28 67 chr13 2822481 2822661 -99050508 + L1MEd LINE L1 3646 3818 -2397 642 110 42 68 chr13 2822671 2822789 -99050380 + L1MA7 LINE L1 6174 6288 -3 2043 140 6 19 chr13 2822922 2823236 -99049933 + AluSx SINE Alu 1 310 -2 2187 121 0 13 chr13 2823238 2823543 -99049626 + AluSq SINE Alu 1 301 -12 1240 177 55 52 chr13 2823543 2823702 -99049467 + Looper DNA T2_type 341 503 -1055 1615 184 3 33 chr13 2823702 2824006 -99049163 - AluJb SINE Alu -17 295 1 1240 177 55 52 chr13 2824006 2824156 -99049013 + Looper DNA T2_type 503 651 -907 2255 82 7 33 chr13 2824157 2824461 -99048708 - AluSq SINE Alu -16 297 2 645 247 129 0 chr13 2824477 2824647 -99048522 - MER3 DNA MER1_type -1 208 17 2339 203 78 19 chr13 2824663 2824744 -99048425 + Looper DNA T2_type 662 737 -821 1086 200 43 0 chr13 2824744 2824954 -99048215 + MER20 DNA MER1_type 1 219 0 2339 203 78 19 chr13 2824954 2825438 -99047731 + Looper DNA T2_type 737 1260 -298 375 115 77 115 chr13 2825432 2825516 -99047653 + Looper DNA T2_type 1166 1247 -311 * 1957 163 0 3 chr13 2825516 2825822 -99047347 + AluJo SINE Alu 1 305 -7 375 115 77 115 chr13 2825822 2825841 -99047328 + Looper DNA T2_type 1247 1265 -293 1929 155 3 3 chr13 2825866 2826169 -99047000 + AluJb SINE Alu 1 303 -9 2193 105 3 40 chr13 2826175 2826500 -99046669 + AluSp SINE Alu 1 313 0 226 178 44 0 chr13 2826516 2826561 -99046608 + MER3 DNA MER1_type 41 87 -122 * 530 250 16 0 chr13 2826553 2826677 -99046492 - MER3 DNA MER1_type -82 127 2 417 235 8 53 chr13 2826777 2826909 -99046260 - MIR SINE MIR 0 262 137 2186 111 3 3 chr13 2826930 2827228 -99045941 + AluSx SINE Alu 1 298 -14 414 221 93 0 chr13 2827228 2827314 -99045855 - FLAM_A SINE Alu -20 113 20 404 111 79 0 chr13 2827365 2827458 -99045711 - AluSp/q SINE Alu 0 317 220 1980 104 0 4 chr13 2827487 2827738 -99045431 - AluSx SINE Alu -62 250 1 247 323 81 0 chr13 2827857 2827981 -99045188 - L2 LINE L2 -5 3267 3134 1183 157 63 22 chr13 2828030 2828253 -99044916 + AluJo SINE Alu 79 310 -2 287 296 139 12 chr13 2828300 2828472 -99044697 - L2 LINE L2 -213 3059 2866 713 150 8 24 chr13 2828541 2828668 -99044501 + MER45R DNA AcHobo 1457 1581 0 1971 93 12 99 chr13 2828808 2829140 -99044029 + AluSg SINE Alu 1 303 -7 2340 89 10 0 chr13 2829190 2829492 -99043677 - AluSp SINE Alu -8 305 1 2352 88 0 10 chr13 2829909 2830214 -99042955 + AluSq SINE Alu 1 302 -11 2144 136 0 0 chr13 2830246 2830547 -99042622 + AluSx SINE Alu 1 301 -11 2208 128 0 0 chr13 2830700 2830997 -99042172 + AluSx SINE Alu 1 297 -15 390 258 132 33 chr13 2831178 2831391 -99041778 - L1ME LINE L1 -297 5824 5591 340 320 98 40 chr13 2831640 2832112 -99041057 - L1ME LINE L1 -1539 4607 4109 342 230 30 22 chr13 2832185 2832320 -99040849 - L1ME LINE L1 -2146 4000 3865 237 323 0 50 chr13 2832745 2832844 -99040325 + L2 LINE L2 2981 3074 -198 209 284 0 118 chr13 2833037 2833092 -99040077 + MIR SINE MIR 76 110 -152 1947 121 25 18 chr13 2833092 2833402 -99039767 - AluSx SINE Alu 0 312 1 209 284 0 118 chr13 2833402 2833472 -99039697 + MIR SINE MIR 110 187 -75 2095 126 17 3 chr13 2833631 2833932 -99039237 + AluSq SINE Alu 1 305 -8 295 262 0 0 chr13 2834181 2834242 -99038927 - MER2 DNA MER2_type -212 133 73 478 140 68 33 chr13 2834245 2834453 -99038716 + AluJo SINE Alu 3 290 -22 323 221 0 93 chr13 2834467 2834553 -99038616 - MER2 DNA MER2_type -267 78 1 410 212 17 51 chr13 2834730 2834848 -99038321 + MIR SINE MIR 35 148 -60 589 233 69 80 chr13 2835308 2835455 -99037714 + MIR SINE MIR 2 146 -116 2309 83 10 0 chr13 2835455 2835744 -99037425 + AluSg SINE Alu 2 293 -17 589 233 69 80 chr13 2835744 2835858 -99037311 + MIR SINE MIR 146 260 -2 2110 130 3 0 chr13 2835962 2836261 -99036908 - AluSx SINE Alu -12 300 1 246 277 18 62 chr13 2836355 2836473 -99036696 + MIR SINE MIR 2 110 -104 27 62 0 0 chr13 2838278 2838326 -99034843 + GC_rich Low_complexity Low_complexity 1 48 0 2491 77 0 0 chr13 2838695 2839006 -99034163 - AluSx SINE Alu -1 311 1 1622 156 33 10 chr13 2839230 2839531 -99033638 + AluJb SINE Alu 1 308 -4 193 313 24 24 chr13 2839559 2839642 -99033527 - L3 LINE CR1 -22 1555 1473 180 247 56 79 chr13 2839707 2839796 -99033373 - L3 LINE CR1 -211 1366 1280 462 18 0 0 chr13 2839894 2839949 -99033220 + (TG)n Simple_repeat Simple_repeat 2 56 0 2110 115 4 0 chr13 2839950 2840228 -99032941 - AluSx SINE Alu -33 279 1 271 224 0 0 chr13 2840413 2840462 -99032707 + L2 LINE L2 3210 3258 -14 2216 94 3 39 chr13 2840680 2840988 -99032181 + AluSp SINE Alu 1 297 -16 2133 122 26 0 chr13 2840988 2841291 -99031878 + AluSx SINE Alu 1 311 -1 1888 150 0 23 chr13 2841296 2841602 -99031567 + AluJo SINE Alu 5 303 -9 2205 122 7 0 chr13 2841604 2841900 -99031269 + AluSx SINE Alu 1 298 -14 2236 96 36 0 chr13 2841900 2842201 -99030968 + AluSx SINE Alu 1 312 0 180 303 30 45 chr13 2842344 2842410 -99030759 - L3 LINE CR1 -5 1572 1508 1713 162 9 62 chr13 2842499 2842671 -99030498 - AluSx SINE Alu -8 304 124 186 43 0 0 chr13 2842671 2842694 -99030475 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2091 92 3 11 chr13 2842694 2842978 -99030191 - AluSc SINE Alu -27 282 1 2372 85 0 0 chr13 2842987 2843300 -99029869 - AluSq SINE Alu 0 313 1 1713 162 9 62 chr13 2843300 2843436 -99029733 - AluSx SINE Alu -195 117 1 217 224 64 66 chr13 2843928 2844034 -99029135 - MIR SINE MIR -5 203 85 193 336 44 44 chr13 2844058 2844195 -99028974 + MIR SINE MIR 14 150 -112 998 270 145 58 chr13 2844468 2845135 -99028034 + MER21B LTR ERV1 6 730 -133 442 223 9 9 chr13 2845281 2845393 -99027776 - MIR SINE MIR -56 206 95 2448 79 3 0 chr13 2845415 2845719 -99027450 - AluY SINE Alu -4 307 3 396 226 28 0 chr13 2845731 2845837 -99027332 + L1 LINE L1 2768 2876 -3270 264 172 0 0 chr13 2845842 2845900 -99027269 + T-rich Low_complexity Low_complexity 1 58 0 2397 91 0 10 chr13 2845915 2846222 -99026947 + AluSx SINE Alu 1 304 -8 739 154 7 0 chr13 2846264 2846407 -99026762 + L1 LINE L1 2865 3008 -3138 2734 124 12 23 chr13 2846414 2846842 -99026327 + LTR3 LTR ERVK 1 423 -9 763 208 65 4 chr13 2846856 2847101 -99026068 + L1 LINE L1 3009 3268 -2878 1804 136 63 11 chr13 2847111 2847398 -99025771 + AluSg SINE Alu 5 306 -4 2019 164 0 0 chr13 2847409 2847720 -99025449 + AluJb SINE Alu 2 312 0 2361 81 0 3 chr13 2847720 2848017 -99025152 + AluY SINE Alu 1 296 -15 29 0 0 0 chr13 2848017 2848046 -99025123 + AT_rich Low_complexity Low_complexity 1 29 0 460 102 0 153 chr13 2848046 2848144 -99025025 + AluSq SINE Alu 121 203 -110 993 74 0 0 chr13 2848179 2848301 -99024868 + AluSg/x SINE Alu 181 302 -8 583 214 15 30 chr13 2848336 2848467 -99024702 + FLAM_A SINE Alu 1 129 -4 609 154 164 34 chr13 2848469 2848513 -99024656 + Charlie1 DNA MER1_type 2478 2515 -246 2260 103 0 13 chr13 2848513 2848823 -99024346 - AluSq SINE Alu -7 306 1 609 154 164 34 chr13 2848823 2848986 -99024183 + Charlie1 DNA MER1_type 2515 2712 -49 2466 86 0 0 chr13 2849097 2849398 -99023771 - AluSx SINE Alu -11 301 1 2020 130 13 0 chr13 2849554 2849854 -99023315 + AluSq SINE Alu 1 304 -9 803 111 19 0 chr13 2850147 2850255 -99022914 + AluSq/x SINE Alu 1 110 -203 2208 110 0 0 chr13 2850280 2850605 -99022564 + AluSg SINE Alu 1 325 0 243 0 0 0 chr13 2850763 2850790 -99022379 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1078 139 48 0 chr13 2851882 2852047 -99021122 - AluSx SINE Alu -11 299 127 1016 108 0 0 chr13 2852112 2852242 -99020927 - AluSx SINE Alu -183 130 1 254 176 39 0 chr13 2852633 2852684 -99020485 + Charlie1 DNA MER1_type 2709 2761 0 2041 146 0 0 chr13 2853064 2853358 -99019811 + AluJb SINE Alu 9 302 -10 2486 78 7 0 chr13 2853519 2853828 -99019341 + AluY SINE Alu 1 311 0 198 71 0 0 chr13 2854031 2854059 -99019110 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 401 100 0 17 chr13 2854776 2854836 -99018333 - AluSc SINE Alu -178 131 73 264 172 0 0 chr13 2855021 2855079 -99018090 + T-rich Low_complexity Low_complexity 1 58 0 2397 91 0 10 chr13 2855093 2855400 -99017769 + AluSx SINE Alu 1 304 -8 739 154 7 0 chr13 2855442 2855585 -99017584 + L1MB2 LINE L1 2865 3008 -3138 2734 124 12 23 chr13 2855592 2856020 -99017149 + LTR3 LTR ERVK 1 423 -9 763 208 65 4 chr13 2856034 2856279 -99016890 + L1MB2 LINE L1 3009 3268 -2878 1804 136 63 11 chr13 2856289 2856576 -99016593 + AluSg SINE Alu 5 306 -4 1909 172 0 0 chr13 2856587 2856884 -99016285 + AluJb SINE Alu 2 298 -14 2274 105 0 3 chr13 2856884 2857188 -99015981 + AluY SINE Alu 1 303 -8 2369 106 0 0 chr13 2857193 2857505 -99015664 + AluSx SINE Alu 1 312 0 7099 185 54 44 chr13 2857532 2858149 -99015020 + L1MB2 LINE L1 3562 4172 -2010 2388 99 0 0 chr13 2858149 2858443 -99014726 - AluSq SINE Alu -19 294 1 7099 185 54 44 chr13 2858443 2858648 -99014521 + L1MB2 LINE L1 4172 4374 -1808 2492 33 40 10 chr13 2858648 2858949 -99014220 + AluY SINE Alu 1 310 -1 7099 185 54 44 chr13 2858949 2859362 -99013807 + L1MB2 LINE L1 4374 4782 -1400 2424 47 7 13 chr13 2859362 2859663 -99013506 - AluY SINE Alu -11 300 2 7099 185 54 44 chr13 2859663 2860137 -99013032 + L1MB2 LINE L1 4782 5250 -932 2026 126 0 46 chr13 2860137 2860439 -99012730 + AluJb SINE Alu 1 288 -24 1441 153 117 36 chr13 2860449 2860723 -99012446 + AluSg SINE Alu 1 296 -14 7099 185 54 44 chr13 2860723 2860837 -99012332 + L1MB2 LINE L1 5258 5437 -745 279 241 0 0 chr13 2860838 2860896 -99012273 + AluYa5 SINE Alu 135 192 -109 27 0 0 0 chr13 2860911 2860938 -99012231 + AT_rich Low_complexity Low_complexity 1 27 0 3226 168 66 45 chr13 2860939 2861011 -99012158 + L1MB2 LINE L1 5429 5498 -673 2141 118 0 32 chr13 2861011 2861325 -99011844 + AluSx SINE Alu 1 304 -8 3226 168 66 45 chr13 2861325 2861836 -99011333 + L1MB2 LINE L1 5498 6031 -140 2284 96 0 19 chr13 2861836 2862149 -99011020 - AluSg SINE Alu -3 307 1 3226 168 66 45 chr13 2862149 2862249 -99010920 + L1MB2 LINE L1 6031 6127 -44 2796 167 44 175 chr13 2862401 2862471 -99010698 + L1MB2 LINE L1 5258 5336 -835 2013 126 0 46 chr13 2862471 2862773 -99010396 + AluJb SINE Alu 1 288 -24 1458 150 117 36 chr13 2862783 2863057 -99010112 + AluSg SINE Alu 1 296 -14 2796 167 44 175 chr13 2863057 2863172 -99009997 + L1MB2 LINE L1 5346 5474 -697 279 241 0 0 chr13 2863172 2863230 -99009939 + AluYa5 SINE Alu 135 192 -109 2796 167 44 175 chr13 2863230 2863345 -99009824 + L1MB2 LINE L1 5474 5602 -569 2141 118 0 32 chr13 2863345 2863659 -99009510 + AluSx SINE Alu 1 304 -8 2796 167 44 175 chr13 2863659 2864170 -99008999 + L1MB2 LINE L1 5602 6037 -134 2155 115 6 19 chr13 2864170 2864483 -99008686 - AluSx SINE Alu -3 309 1 1232 190 28 120 chr13 2865279 2865625 -99007544 - Charlie1 DNA MER1_type 0 2761 2466 2165 115 0 7 chr13 2865625 2865929 -99007240 - AluSx SINE Alu -10 302 1 1232 190 28 120 chr13 2865929 2866039 -99007130 - Charlie1 DNA MER1_type -295 2466 2347 244 167 0 0 chr13 2866051 2866087 -99007082 - Charlie1 DNA MER1_type -2725 36 1 1893 111 0 25 chr13 2866452 2866732 -99006437 + AluSx SINE Alu 40 311 -1 2067 99 0 3 chr13 2866804 2867097 -99006072 + AluSg1 SINE Alu 1 292 -17 194 331 137 32 chr13 2867345 2867469 -99005700 + MIR3 SINE MIR 33 169 -39 252 73 18 109 chr13 2867550 2867605 -99005564 - LTR67 LTR ERVL -4 553 504 463 287 68 94 chr13 2867764 2868029 -99005140 + L2 LINE L2 3010 3267 -5 205 245 0 0 chr13 2868056 2868105 -99005064 + L2 LINE L2 3256 3304 -9 2185 77 0 7 chr13 2868168 2868466 -99004703 + AluY SINE Alu 1 296 -15 2223 183 25 27 chr13 2869063 2869407 -99003762 - L1MB3 LINE L1 -2 6181 5838 1894 121 37 0 chr13 2869407 2869705 -99003464 - AluSx SINE Alu -2 310 2 2034 118 0 29 chr13 2869712 2870027 -99003142 - AluSg SINE Alu -4 306 1 2223 183 25 27 chr13 2870027 2870161 -99003008 - L1MB3 LINE L1 -351 5832 5696 222 326 31 0 chr13 2870217 2870315 -99002854 + MIR SINE MIR 106 206 -56 306 366 6 0 chr13 2871087 2871251 -99001918 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2193 109 0 10 chr13 2871548 2871861 -99001308 - AluY SINE Alu 0 311 2 1878 105 7 56 chr13 2872255 2872560 -99000609 - AluSq SINE Alu -23 290 1 275 0 0 28 chr13 2872622 2872658 -99000511 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2305 49 3 3 chr13 2872669 2872953 -99000216 - AluY SINE Alu -27 284 1 1074 68 0 0 chr13 2872954 2873087 -99000082 - AluYb8 SINE Alu -185 133 1 2477 115 37 91 chr13 2873087 2873573 -98999596 - L1MB2 LINE L1 -41 6130 5671 322 257 57 57 chr13 2873581 2873721 -98999448 - MIR3 SINE MIR 0 208 69 2198 81 0 14 chr13 2873744 2874039 -98999130 - AluSg SINE Alu -19 291 1 511 295 13 13 chr13 2874039 2874195 -98998974 - MIR SINE MIR -4 258 103 382 79 32 0 chr13 2874197 2874260 -98998909 + (TA)n Simple_repeat Simple_repeat 1 65 0 1918 129 4 0 chr13 2874262 2874541 -98998628 - AluSg SINE Alu -30 280 1 353 318 85 0 chr13 2874617 2874746 -98998423 - L2 LINE L2 0 3272 3133 252 273 117 23 chr13 2875083 2875140 -98998029 - MIR SINE MIR -44 218 168 357 24 0 0 chr13 2875140 2875182 -98997987 + (TC)n Simple_repeat Simple_repeat 1 42 0 1241 158 17 70 chr13 2875183 2875481 -98997688 - AluJo SINE Alu -30 282 1 252 273 117 23 chr13 2875481 2875549 -98997620 - MIR SINE MIR -93 169 79 2118 102 0 20 chr13 2876595 2876898 -98996271 - AluSx SINE Alu -15 297 1 643 236 85 43 chr13 2877142 2877280 -98995889 + L1M4 LINE L1 4995 5126 -1020 2257 85 7 3 chr13 2877280 2877587 -98995582 + AluSc SINE Alu 1 308 -1 643 236 85 43 chr13 2877587 2877706 -98995463 + L1M4 LINE L1 5126 5263 -883 396 254 0 87 chr13 2877711 2877797 -98995372 - HAL1 LINE L1 -180 2327 2264 1452 166 0 67 chr13 2877797 2878110 -98995059 - AluJb SINE Alu -20 292 1 396 254 0 87 chr13 2878110 2878208 -98994961 - HAL1 LINE L1 -243 2264 2159 266 229 110 37 chr13 2878283 2878392 -98994777 - HAL1 LINE L1 -662 1845 1729 1935 102 4 0 chr13 2878413 2878678 -98994491 - AluSp SINE Alu -1 312 47 598 111 56 0 chr13 2878681 2878771 -98994398 + AluSg/x SINE Alu 201 295 -14 984 106 8 0 chr13 2879020 2879152 -98994017 + FLAM_C SINE Alu 1 133 0 751 217 166 5 chr13 2879226 2879443 -98993726 - HAL1 LINE L1 -770 1737 1486 770 104 0 9 chr13 2879443 2879558 -98993611 + AluSg/x SINE Alu 197 310 0 1311 142 13 13 chr13 2879560 2879872 -98993297 + L1MB8 LINE L1 5190 5499 -675 1099 101 0 0 chr13 2879875 2880012 -98993157 + AluSq/x SINE Alu 1 140 -172 2119 126 0 3 chr13 2880012 2880322 -98992847 + AluSx SINE Alu 1 309 -3 1099 101 0 0 chr13 2880322 2880333 -98992836 + AluSq/x SINE Alu 139 149 -163 2424 128 63 101 chr13 2880333 2880762 -98992407 + L1MB8 LINE L1 5505 5912 -266 2060 120 0 0 chr13 2880762 2881062 -98992107 + AluSx SINE Alu 1 300 -12 2424 128 63 101 chr13 2881062 2881156 -98992013 + L1MB8 LINE L1 5912 6008 -170 960 110 0 0 chr13 2881173 2881309 -98991860 - AluSg/x SINE Alu -13 297 162 417 107 0 0 chr13 2881413 2881469 -98991700 - AluSq/x SINE Alu -179 133 78 1262 155 5 9 chr13 2881469 2881682 -98991487 - AluSx SINE Alu -100 212 1 1302 151 14 18 chr13 2881685 2881957 -98991212 - L1M4 LINE L1 -675 5499 5235 2015 105 16 7 chr13 2881984 2882290 -98990879 + AluY SINE Alu 1 309 -2 573 170 64 7 chr13 2882319 2882460 -98990709 + L1MB8 LINE L1 6025 6173 -5 1091 126 6 6 chr13 2882463 2882474 -98990695 + AluSg/x SINE Alu 121 131 -179 2218 93 3 3 chr13 2882474 2882776 -98990393 + AluSq SINE Alu 1 302 -11 1091 126 6 6 chr13 2882776 2882939 -98990230 + AluSg/x SINE Alu 130 295 -15 1374 253 107 65 chr13 2882941 2883230 -98989939 + HAL1 LINE L1 828 1103 -1404 2397 61 3 6 chr13 2883230 2883542 -98989627 + AluY SINE Alu 1 311 0 1374 253 107 65 chr13 2883542 2884057 -98989112 + HAL1 LINE L1 1103 1666 -841 329 278 11 0 chr13 2884114 2884204 -98988965 + HAL1 LINE L1 1802 1892 -615 260 33 0 0 chr13 2884384 2884414 -98988755 - LTR6A LTR ERV1 -462 102 73 292 243 149 68 chr13 2885342 2885373 -98987796 + HAL1 LINE L1 2012 2039 -468 1968 110 3 17 chr13 2885373 2885674 -98987495 + AluSp SINE Alu 1 297 -16 292 243 149 68 chr13 2885674 2885875 -98987294 + HAL1 LINE L1 2039 2222 -285 2496 55 0 3 chr13 2885875 2886185 -98986984 + AluY SINE Alu 1 309 -2 292 243 149 68 chr13 2886185 2886346 -98986823 + HAL1 LINE L1 2222 2438 -69 32 26 0 0 chr13 2886373 2886412 -98986757 + AT_rich Low_complexity Low_complexity 1 39 0 188 270 162 40 chr13 2886626 2886645 -98986524 - MIR SINE MIR -107 101 86 1269 139 16 84 chr13 2886645 2886858 -98986311 + MER46A DNA MER2_type 3 198 -2533 1834 133 19 16 chr13 2886858 2887167 -98986002 - AluSx SINE Alu -2 310 1 1269 139 16 84 chr13 2887167 2887204 -98985965 + MER46A DNA MER2_type 198 236 0 188 270 162 40 chr13 2887204 2887258 -98985911 - MIR SINE MIR -122 86 19 488 252 44 7 chr13 2887463 2887598 -98985571 + MER117 DNA MER1_type 1 140 -57 1290 196 113 48 chr13 2887674 2888010 -98985159 + MLT1A1 LTR MaLR 8 365 0 576 153 23 92 chr13 2888310 2888414 -98984755 + MER3 DNA MER1_type 40 150 -12 180 0 0 0 chr13 2888414 2888434 -98984735 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2014 104 0 10 chr13 2888434 2888722 -98984447 - AluSg SINE Alu -25 285 1 1900 134 30 0 chr13 2888722 2889020 -98984149 - AluSx SINE Alu -5 307 1 576 153 23 92 chr13 2889020 2889044 -98984125 + MER3 DNA MER1_type 147 161 -48 2781 239 158 42 chr13 2889074 2890191 -98982978 + L1MDa LINE L1 19 1320 -5220 780 102 0 70 chr13 2890192 2890320 -98982849 - FRAM SINE Alu -4 172 54 1361 191 32 27 chr13 2890392 2890700 -98982469 + LTR38 LTR ERV1 127 451 -159 335 262 39 0 chr13 2890715 2890818 -98982351 + MER87 LTR ERV1 395 501 -40 1871 142 23 3 chr13 2890818 2891120 -98982049 - AluSx SINE Alu -4 308 1 1464 146 18 18 chr13 2891263 2891537 -98981632 + AluSp SINE Alu 22 295 -18 3187 178 52 50 chr13 2891537 2892408 -98980761 + L1MDa LINE L1 1302 2177 -4363 393 227 52 0 chr13 2892477 2892574 -98980595 + U13 snRNA snRNA 1 102 -2 1283 151 19 31 chr13 2892772 2892857 -98980312 + AluJo SINE Alu 57 141 -171 288 0 0 0 chr13 2892857 2892889 -98980280 + (TA)n Simple_repeat Simple_repeat 2 33 0 1283 151 19 31 chr13 2892889 2893061 -98980108 + AluJo SINE Alu 141 311 -1 2082 100 0 13 chr13 2893120 2893419 -98979750 - AluSq SINE Alu -18 295 1 296 163 213 31 chr13 2893422 2893582 -98979587 + Charlie1 DNA MER1_type 2524 2712 -49 2335 86 0 0 chr13 2893693 2893994 -98979175 - AluSx SINE Alu -11 301 1 1905 130 13 0 chr13 2894150 2894450 -98978719 + AluSq SINE Alu 1 304 -9 779 129 0 17 chr13 2894740 2894856 -98978313 + AluSq/x SINE Alu 2 115 -198 2083 110 0 0 chr13 2894876 2895201 -98977968 + AluSg SINE Alu 1 325 0 243 0 0 0 chr13 2895359 2895386 -98977783 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1017 139 48 0 chr13 2896478 2896643 -98976526 - AluSx SINE Alu -11 299 127 958 113 0 0 chr13 2896705 2896838 -98976331 - AluSx SINE Alu -180 133 1 253 176 39 0 chr13 2897229 2897280 -98975889 + Charlie1 DNA MER1_type 2709 2761 0 1927 146 0 0 chr13 2897660 2897954 -98975215 + AluJb SINE Alu 9 302 -10 2353 78 7 0 chr13 2898115 2898424 -98974745 + AluY SINE Alu 1 311 0 198 71 0 0 chr13 2898627 2898655 -98974514 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 265 100 0 0 chr13 2899372 2899412 -98973757 - AluSq/x SINE Alu -169 133 94 277 209 11 128 chr13 2899518 2899588 -98973581 - LTR9 LTR ERV1 -174 438 388 2198 87 0 0 chr13 2899588 2899875 -98973294 + AluSg SINE Alu 1 287 -23 277 209 11 128 chr13 2899875 2899913 -98973256 - LTR9 LTR ERV1 -224 388 347 1727 155 11 90 chr13 2899950 2900317 -98972852 - LTR9 LTR ERV1 -274 338 1 1374 185 62 14 chr13 2900440 2900716 -98972453 + AluJo SINE Alu 1 289 -23 2061 80 42 11 chr13 2900725 2901012 -98972157 + AluSp SINE Alu 1 296 -17 1536 139 25 86 chr13 2901034 2901220 -98971949 - AluJb SINE Alu -8 304 145 1889 141 0 7 chr13 2901220 2901518 -98971651 - AluSc SINE Alu -13 296 1 1536 139 25 86 chr13 2901518 2901655 -98971514 - AluJb SINE Alu -167 145 1 259 125 152 18 chr13 2901982 2902094 -98971075 + (TTTAA)n Simple_repeat Simple_repeat 1 127 0 1865 146 0 14 chr13 2902266 2902553 -98970616 - AluJo SINE Alu -29 283 1 2098 102 0 0 chr13 2902606 2902919 -98970250 - AluSx SINE Alu 0 313 1 2012 131 0 0 chr13 2902923 2903213 -98969956 - AluSx SINE Alu -18 294 5 307 221 0 29 chr13 2903381 2903449 -98969720 + L1M LINE L1 5353 5418 -703 4861 74 19 50 chr13 2903489 2903897 -98969272 - L1PA11 LINE L1 -2 6172 5794 2191 101 3 19 chr13 2903897 2904215 -98968954 - AluSp SINE Alu 0 313 1 4861 74 19 50 chr13 2904215 2904508 -98968661 - L1PA11 LINE L1 -380 5794 5493 2025 137 0 13 chr13 2904508 2904823 -98968346 - AluSx SINE Alu -1 311 1 2159 123 0 0 chr13 2904824 2905133 -98968036 - AluSq SINE Alu -4 309 1 2002 104 14 0 chr13 2905136 2905435 -98967734 - AluSx SINE Alu 0 303 1 990 169 0 0 chr13 2905453 2905619 -98967550 + FRAM SINE Alu 1 158 -18 2024 145 0 0 chr13 2905647 2905958 -98967211 + AluSx SINE Alu 1 311 -1 627 262 79 30 chr13 2905998 2906200 -98966969 + MIR SINE MIR 49 260 -2 2169 73 0 0 chr13 2906264 2906607 -98966562 - AluY SINE Alu 0 352 10 1931 103 0 0 chr13 2906627 2906899 -98966270 - AluSq SINE Alu -3 310 39 1911 121 0 4 chr13 2906899 2907178 -98965991 - AluSx SINE Alu -33 279 1 21 0 0 0 chr13 2907178 2907199 -98965970 + AT_rich Low_complexity Low_complexity 1 21 0 1964 186 91 59 chr13 2907411 2907573 -98965596 - MER119 DNA MER1_type -3 580 425 2328 71 0 10 chr13 2907573 2907882 -98965287 - AluSg SINE Alu -4 306 1 1964 186 91 59 chr13 2907882 2907926 -98965243 - MER119 DNA MER1_type -158 425 384 2210 95 0 3 chr13 2907926 2908220 -98964949 - AluSc SINE Alu -16 293 1 1964 186 91 59 chr13 2908220 2908231 -98964938 - MER119 DNA MER1_type -199 384 375 2045 105 20 13 chr13 2908231 2908535 -98964634 - AluSx SINE Alu -4 308 3 1964 186 91 59 chr13 2908535 2908873 -98964296 - MER119 DNA MER1_type -208 375 5 708 274 10 5 chr13 2909219 2909416 -98963753 + L1PB4 LINE L1 5956 6153 -3 1467 188 0 7 chr13 2909508 2909780 -98963389 + AluJo SINE Alu 4 273 -39 2293 84 0 3 chr13 2909783 2910091 -98963078 + AluY SINE Alu 1 307 -4 912 200 0 0 chr13 2910091 2910266 -98962903 + AluJo/FRAM SINE Alu 135 309 -3 2046 104 0 27 chr13 2910266 2910563 -98962606 + AluSx SINE Alu 1 289 -23 239 189 57 0 chr13 2910597 2910650 -98962519 - MER69 DNA AcHobo -1170 56 1 338 244 28 82 chr13 2911252 2911571 -98961598 + L1ME4a LINE L1 5565 5866 -255 2205 65 41 3 chr13 2911606 2911896 -98961273 - AluY SINE Alu -8 303 3 30 0 0 0 chr13 2911898 2911928 -98961241 + AT_rich Low_complexity Low_complexity 1 30 0 1928 136 0 16 chr13 2911928 2912237 -98960932 - AluJb SINE Alu -3 309 6 350 252 59 25 chr13 2912271 2912390 -98960779 + MIR SINE MIR 51 173 -89 308 200 25 12 chr13 2912383 2912463 -98960706 + MIR SINE MIR 48 128 -134 * 2007 99 20 17 chr13 2912756 2913049 -98960120 + AluSx SINE Alu 1 294 -18 234 203 85 17 chr13 2914383 2914442 -98958727 - MIR3 SINE MIR -8 200 138 309 90 0 9 chr13 2914531 2914741 -98958428 + AluSc SINE Alu 1 293 -6 433 284 66 51 chr13 2914743 2915137 -98958032 - L1ME4a LINE L1 -73 6048 5649 2086 105 0 3 chr13 2915158 2915480 -98957689 + AluSx SINE Alu 1 321 0 2024 117 0 3 chr13 2915566 2915857 -98957312 - AluSg1 SINE Alu -19 290 1 1217 193 28 120 chr13 2916653 2916999 -98956170 - Charlie1 DNA MER1_type 0 2761 2466 2043 115 0 7 chr13 2916999 2917303 -98955866 - AluSx SINE Alu -10 302 1 1217 193 28 120 chr13 2917303 2917413 -98955756 - Charlie1 DNA MER1_type -295 2466 2347 244 167 0 0 chr13 2917425 2917461 -98955708 - Charlie1 DNA MER1_type -2725 36 1 1775 128 0 0 chr13 2917826 2918099 -98955070 + AluSx SINE Alu 40 312 0 2067 99 0 3 chr13 2918176 2918469 -98954700 + AluSg1 SINE Alu 1 292 -17 194 331 137 32 chr13 2918717 2918841 -98954328 + MIR3 SINE MIR 33 169 -39 252 73 18 109 chr13 2918922 2918977 -98954192 - LTR67 LTR ERVL -4 553 504 463 287 68 94 chr13 2919136 2919401 -98953768 + L2 LINE L2 3010 3267 -5 205 245 0 0 chr13 2919428 2919477 -98953692 + L2 LINE L2 3256 3304 -9 2185 77 0 7 chr13 2919540 2919838 -98953331 + AluY SINE Alu 1 296 -15 2223 183 25 27 chr13 2920435 2920779 -98952390 - L1MB3 LINE L1 -2 6181 5838 1894 121 37 0 chr13 2920779 2921077 -98952092 - AluSx SINE Alu -2 310 2 2034 118 0 29 chr13 2921084 2921399 -98951770 - AluSg SINE Alu -4 306 1 2223 183 25 27 chr13 2921399 2921533 -98951636 - L1MB3 LINE L1 -351 5832 5696 222 326 31 0 chr13 2921589 2921687 -98951482 + MIR SINE MIR 106 206 -56 306 366 6 0 chr13 2922459 2922623 -98950546 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2193 109 0 10 chr13 2922920 2923233 -98949936 - AluY SINE Alu 0 311 2 1878 105 7 56 chr13 2923627 2923932 -98949237 - AluSq SINE Alu -23 290 1 275 0 0 28 chr13 2923994 2924030 -98949139 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2305 49 3 3 chr13 2924041 2924325 -98948844 - AluY SINE Alu -27 284 1 1074 68 0 0 chr13 2924326 2924459 -98948710 - AluYb8 SINE Alu -185 133 1 2477 115 37 91 chr13 2924459 2924945 -98948224 - L1MB2 LINE L1 -41 6130 5671 322 257 57 57 chr13 2924953 2925093 -98948076 - MIR3 SINE MIR 0 208 69 2198 81 0 14 chr13 2925116 2925411 -98947758 - AluSg SINE Alu -19 291 1 511 295 13 13 chr13 2925411 2925567 -98947602 - MIR SINE MIR -4 258 103 331 73 36 0 chr13 2925571 2925626 -98947543 + (TA)n Simple_repeat Simple_repeat 2 58 0 1931 125 4 0 chr13 2925628 2925907 -98947262 - AluSg SINE Alu -30 280 1 353 318 85 0 chr13 2925983 2926112 -98947057 - L2 LINE L2 0 3272 3133 238 281 117 23 chr13 2926449 2926506 -98946663 - MIR SINE MIR -44 218 168 357 24 0 0 chr13 2926506 2926548 -98946621 + (TC)n Simple_repeat Simple_repeat 1 42 0 1249 158 17 67 chr13 2926549 2926846 -98946323 - AluJo SINE Alu -30 282 1 238 281 117 23 chr13 2926846 2926914 -98946255 - MIR SINE MIR -93 169 79 2150 108 0 19 chr13 2927959 2928274 -98944895 - AluSx SINE Alu -3 309 1 643 236 85 43 chr13 2928518 2928656 -98944513 + L1M4 LINE L1 4995 5126 -1020 2257 85 7 3 chr13 2928656 2928963 -98944206 + AluSc SINE Alu 1 308 -1 643 236 85 43 chr13 2928963 2929082 -98944087 + L1M4 LINE L1 5126 5263 -883 396 254 0 87 chr13 2929087 2929173 -98943996 - HAL1 LINE L1 -180 2327 2264 1440 165 0 73 chr13 2929173 2929488 -98943681 - AluJb SINE Alu -20 292 1 396 254 0 87 chr13 2929488 2929586 -98943583 - HAL1 LINE L1 -243 2264 2159 266 229 110 37 chr13 2929661 2929770 -98943399 - HAL1 LINE L1 -662 1845 1729 1935 102 4 0 chr13 2929791 2930056 -98943113 - AluSp SINE Alu -1 312 47 598 111 56 0 chr13 2930059 2930149 -98943020 + AluSg/x SINE Alu 204 298 -14 984 106 8 0 chr13 2930398 2930530 -98942639 + FLAM_C SINE Alu 1 133 0 751 217 166 5 chr13 2930604 2930821 -98942348 - HAL1 LINE L1 -770 1737 1486 770 104 0 9 chr13 2930821 2930936 -98942233 + AluSg/x SINE Alu 199 312 0 501 146 12 12 chr13 2930961 2931075 -98942094 + L1MC4a LINE L1 5211 5324 -830 2112 113 3 0 chr13 2931260 2931553 -98941616 - AluSx SINE Alu -18 294 1 838 154 0 0 chr13 2931553 2931689 -98941480 - AluJb SINE Alu -176 136 1 1651 188 122 26 chr13 2931691 2931733 -98941436 - LTR40c LTR ERVL -19 446 409 2317 114 21 15 chr13 2931733 2932067 -98941102 - MER1B DNA MER1_type -1 336 1 1651 188 122 26 chr13 2932067 2932401 -98940768 - LTR40c LTR ERVL -56 409 34 994 272 101 8 chr13 2932432 2932807 -98940362 + L1MC4a LINE L1 5569 5978 -1830 2169 113 7 0 chr13 2932930 2933232 -98939937 - AluSx SINE Alu -8 304 1 1831 122 14 10 chr13 2933336 2933624 -98939545 - AluSq SINE Alu -24 289 1 1958 114 0 30 chr13 2933626 2933924 -98939245 - AluSx SINE Alu -23 289 1 189 0 0 0 chr13 2934787 2934808 -98938361 + (TG)n Simple_repeat Simple_repeat 2 22 0 1911 84 0 0 chr13 2936950 2937201 -98935968 - AluSx SINE Alu -6 306 56 1523 184 67 31 chr13 2937598 2938386 -98934783 + L1MB4 LINE L1 5017 5896 -284 1840 134 38 0 chr13 2938386 2938676 -98934493 + AluSq SINE Alu 1 301 -12 1523 184 67 31 chr13 2938676 2938938 -98934231 + L1MB4 LINE L1 5896 6147 -33 288 75 19 0 chr13 2939011 2939064 -98934105 + L1MB4 LINE L1 6127 6180 0 2126 106 0 3 chr13 2939187 2939488 -98933681 - AluSg SINE Alu -10 300 1 1908 156 45 66 chr13 2939847 2940025 -98933144 + Tigger2a DNA MER2_type 1 181 -2527 1965 139 3 3 chr13 2940025 2940335 -98932834 - AluSx SINE Alu -2 310 1 1908 156 45 66 chr13 2940335 2940598 -98932571 + Tigger2a DNA MER2_type 181 433 -1 29 60 0 0 chr13 2940787 2940837 -98932332 + AT_rich Low_complexity Low_complexity 1 50 0 22 88 0 0 chr13 2941277 2941334 -98931835 + AT_rich Low_complexity Low_complexity 1 57 0 281 284 37 12 chr13 2941989 2942070 -98931099 - MIR SINE MIR -149 113 31 397 327 80 34 chr13 2943303 2943566 -98929603 + L3b LINE CR1 1111 1385 -198 2194 99 3 0 chr13 2943580 2943884 -98929285 - AluSp SINE Alu -8 305 1 2351 72 3 3 chr13 2943983 2944289 -98928880 + AluSp SINE Alu 1 306 -7 2008 99 0 11 chr13 2945228 2945510 -98927659 - AluSx SINE Alu -33 279 1 372 174 14 0 chr13 2945771 2945840 -98927329 - L1 LINE L1 -1165 4981 4912 4242 144 61 29 chr13 2945846 2946733 -98926436 + L1MA4A LINE L1 4377 5235 -1068 2099 125 3 0 chr13 2946733 2947037 -98926132 + AluSx SINE Alu 1 305 -7 2216 95 3 0 chr13 2947040 2947336 -98925833 + AluSp SINE Alu 1 297 -16 4242 144 61 29 chr13 2947336 2948187 -98924982 + L1MA4A LINE L1 5236 6302 -1 2043 117 0 13 chr13 2948188 2948504 -98924665 + AluSx SINE Alu 1 312 0 1163 123 0 0 chr13 2948879 2949049 -98924120 - AluSc SINE Alu 0 309 140 7491 63 150 4 chr13 2949050 2950116 -98923053 + MER11B LTR ERVK 1 1222 -14 1158 76 0 0 chr13 2950157 2950301 -98922868 - AluSc SINE Alu -165 144 1 1072 157 46 28 chr13 2950679 2950895 -98922274 - AluJb SINE Alu -26 286 67 1329 118 0 0 chr13 2950895 2951081 -98922088 + AluY SINE Alu 1 186 -125 408 208 13 0 chr13 2951110 2951187 -98921982 - AluJb SINE Alu -233 79 2 23 0 0 0 chr13 2951311 2951334 -98921835 + AT_rich Low_complexity Low_complexity 1 23 0 2754 153 50 21 chr13 2951749 2952284 -98920885 + L1MB4 LINE L1 5629 6179 -1 1487 160 14 34 chr13 2952809 2953103 -98920066 + AluJb SINE Alu 1 288 -24 1787 146 10 3 chr13 2953187 2953489 -98919680 - AluSx SINE Alu -8 304 1 1458 206 0 13 chr13 2953489 2953795 -98919374 - AluJo SINE Alu -8 304 3 1545 76 0 19 chr13 2953830 2954041 -98919128 + AluY SINE Alu 11 217 -94 769 185 14 0 chr13 2954144 2954290 -98918879 + AluSg/x SINE Alu 139 286 -26 585 186 16 16 chr13 2954287 2954411 -98918758 + AluSg/x SINE Alu 183 306 -4 * 1313 151 19 55 chr13 2954415 2954686 -98918483 - AluSx SINE Alu -21 291 31 1992 138 57 131 chr13 2954689 2955204 -98917965 - LTR12 LTR ERV1 -237 2201 55 232 176 39 20 chr13 2955204 2955255 -98917914 - LTR30 LTR ERV1 -670 52 1 * 245 176 147 0 chr13 2955255 2955288 -98917881 - AluS SINE Alu -260 43 1 259 140 20 20 chr13 2955255 2955305 -98917864 - AluSp SINE Alu -134 169 120 555 281 215 36 chr13 2955371 2955954 -98917215 + L2 LINE L2 2624 3313 0 306 114 0 0 chr13 2956210 2956254 -98916915 - AluSx SINE Alu -260 48 5 1676 190 0 3 chr13 2956309 2956604 -98916565 + AluJb SINE Alu 1 294 -18 2026 190 81 46 chr13 2956605 2956755 -98916414 + L1M4 LINE L1 3700 3843 -2303 2063 83 0 113 chr13 2956755 2957092 -98916077 + AluSg SINE Alu 2 300 0 2026 190 81 46 chr13 2957092 2957417 -98915752 + L1M4 LINE L1 3843 4197 -1949 816 120 0 113 chr13 2957417 2957567 -98915602 + FLAM_C SINE Alu 1 133 0 2026 190 81 46 chr13 2957567 2957607 -98915562 + L1M4 LINE L1 4197 4234 -1912 1356 125 15 4 chr13 2957609 2957801 -98915368 + L1M3 LINE L1 5471 5662 -509 1773 178 0 3 chr13 2957801 2958099 -98915070 + AluJo SINE Alu 16 312 0 1356 125 15 4 chr13 2958099 2958121 -98915048 + L1M3 LINE L1 5662 5682 -489 2293 88 0 10 chr13 2958242 2958550 -98914619 + AluSx SINE Alu 1 305 -7 198 322 169 0 chr13 2958553 2958671 -98914498 - L2 LINE L2 -424 2890 2753 310 287 113 0 chr13 2958675 2958790 -98914379 - LTR67 LTR ERVL -2 555 428 701 96 0 0 chr13 2958884 2958978 -98914191 - AluJb SINE Alu -209 103 10 289 310 116 8 chr13 2959394 2959523 -98913646 + MER5B DNA MER1_type 1 143 -35 1941 54 0 8 chr13 2959694 2959935 -98913234 + AluY SINE Alu 62 300 -11 1543 113 16 23 chr13 2959994 2960250 -98912919 + AluSx SINE Alu 47 300 -12 561 107 0 0 chr13 2960809 2960884 -98912285 + FRAM/FAM SINE Alu 1 74 -102 1878 233 139 20 chr13 2960996 2961521 -98911648 + MLT1E2 LTR MaLR 1 598 -28 2009 114 32 38 chr13 2961521 2961703 -98911466 + MER44D DNA MER2_type 1 183 -2308 2338 96 0 3 chr13 2961703 2962016 -98911153 - AluSx SINE Alu 0 312 1 2009 114 32 38 chr13 2962016 2962174 -98910995 + MER44D DNA MER2_type 183 609 0 1878 233 139 20 chr13 2962174 2962207 -98910962 + MLT1E2 LTR MaLR 598 626 0 206 287 66 66 chr13 2962363 2962485 -98910684 + L2 LINE L2 3180 3301 -12 2303 88 0 0 chr13 2962773 2963069 -98910100 + AluSx SINE Alu 1 296 -16 1955 129 7 0 chr13 2963076 2963371 -98909798 + AluSx SINE Alu 1 297 -15 1292 133 68 117 chr13 2963377 2963686 -98909483 + AluJb SINE Alu 1 294 -8 363 287 131 8 chr13 2964613 2964735 -98908434 - L2 LINE L2 0 3272 3136 1125 183 5 0 chr13 2965174 2965387 -98907782 - AluJo SINE Alu -85 227 14 860 175 37 5 chr13 2965427 2965616 -98907553 - AluSp SINE Alu -25 288 94 2218 85 13 10 chr13 2965981 2966288 -98906881 + AluSp SINE Alu 3 310 -3 1638 172 10 3 chr13 2966304 2966601 -98906568 + AluJo SINE Alu 14 312 0 593 236 45 6 chr13 2966767 2966924 -98906245 - MLT1C LTR MaLR -49 418 256 216 204 0 23 chr13 2966950 2966994 -98906175 + CT-rich Low_complexity Low_complexity 4 46 0 872 154 7 0 chr13 2967003 2967146 -98906023 - AluJb SINE Alu -32 280 137 466 144 10 10 chr13 2967717 2967814 -98905355 + GA-rich Low_complexity Low_complexity 3 99 0 312 257 109 0 chr13 2967820 2967921 -98905248 + L2 LINE L2 3144 3255 -17 188 138 0 0 chr13 2968116 2968145 -98905024 + L2 LINE L2 3025 3053 -219 368 311 125 0 chr13 2968187 2968383 -98904786 + MIR SINE MIR 24 249 -13 1205 94 0 6 chr13 2970912 2971072 -98902097 + AluY SINE Alu 1 159 -152 369 389 12 0 chr13 2971261 2971428 -98901741 + G-rich Low_complexity Low_complexity 4 172 0 226 176 0 0 chr13 2971443 2971494 -98901675 + AluSp/q SINE Alu 253 303 0 1926 137 0 11 chr13 2971537 2971867 -98901302 - AluSx SINE Alu 0 327 1 694 146 182 16 chr13 2971875 2972067 -98901102 - L1MC5 LINE L1 -51 7910 7687 * 2367 176 63 37 chr13 2972046 2972263 -98900906 + L1M4 LINE L1 4143 4353 -1793 2293 173 73 7 chr13 2972263 2972690 -98900479 - MSTB2 LTR MaLR -2 455 1 2367 176 63 37 chr13 2972690 2973118 -98900051 + L1M4 LINE L1 4353 4805 -1341 2201 96 0 7 chr13 2973118 2973410 -98899759 + AluSg SINE Alu 1 290 -20 2416 179 39 42 chr13 2973527 2973594 -98899575 + L1M4 LINE L1 4783 4849 -1297 2215 90 10 7 chr13 2973594 2973884 -98899285 - AluSc SINE Alu -16 293 3 2416 179 39 42 chr13 2973884 2974071 -98899098 + L1M4 LINE L1 4849 5035 -1111 3467 79 23 0 chr13 2974071 2974514 -98898655 - MLT2A2 LTR ERVL 0 453 1 2416 179 39 42 chr13 2974514 2974856 -98898313 + L1M4 LINE L1 5035 5378 -768 1702 164 34 7 chr13 2974856 2975218 -98897951 + AluSx SINE Alu 1 370 0 11163 176 45 30 chr13 2975218 2975428 -98897741 + L1MB1 LINE L1 2761 2966 -3202 2307 107 0 10 chr13 2975428 2975736 -98897433 + AluSg SINE Alu 1 305 -5 11163 176 45 30 chr13 2975736 2977046 -98896123 + L1MB1 LINE L1 2966 4346 -1822 2121 119 10 3 chr13 2977046 2977339 -98895830 - AluSx SINE Alu -17 295 1 11163 176 45 30 chr13 2977339 2978484 -98894685 + L1MB1 LINE L1 4346 5472 -696 360 0 0 0 chr13 2978487 2978527 -98894642 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 548 132 0 0 chr13 2978532 2978608 -98894561 - AluJ SINE Alu -25 287 212 * 721 185 7 7 chr13 2978605 2978740 -98894429 - AluJ SINE Alu -164 148 14 3668 149 12 82 chr13 2978743 2979028 -98894141 + L1MB1 LINE L1 5452 5755 -413 709 177 8 0 chr13 2979028 2979158 -98894011 + FLAM_A SINE Alu 1 131 -2 3668 149 12 82 chr13 2979158 2979430 -98893739 + L1MB1 LINE L1 5755 5943 -225 2371 86 0 0 chr13 2979430 2979721 -98893448 + AluSx SINE Alu 5 295 -17 3668 149 12 82 chr13 2979721 2979931 -98893238 + L1MB1 LINE L1 5943 6166 -2 1926 110 26 55 chr13 2980002 2980338 -98892831 - AluSg SINE Alu 0 327 1 2467 82 3 0 chr13 2980339 2980644 -98892525 - AluSx SINE Alu -6 306 1 664 158 0 65 chr13 2980775 2980914 -98892255 - FLAM_C SINE Alu -12 131 2 1719 191 40 47 chr13 2981372 2981519 -98891650 - Charlie4a DNA MER1_type -1453 508 361 2446 98 30 8 chr13 2981519 2981885 -98891284 - THE1C LTR MaLR 0 375 2 1719 191 40 47 chr13 2981885 2982160 -98891009 - Charlie4a DNA MER1_type -1600 361 89 1989 115 33 0 chr13 2982449 2982719 -98890450 + AluSx SINE Alu 1 279 -33 201 39 0 0 chr13 2982721 2982747 -98890422 + (CAA)n Simple_repeat Simple_repeat 1 26 0 624 165 78 0 chr13 2983573 2983688 -98889481 - MER5A DNA MER1_type -5 184 61 1661 167 4 7 chr13 2983731 2984012 -98889157 - AluSx SINE Alu -31 281 2 328 225 28 0 chr13 2984563 2984634 -98888535 - MER5A DNA MER1_type -114 75 3 200 194 0 0 chr13 2984673 2984709 -98888460 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 2394 72 10 0 chr13 2984713 2985004 -98888165 - AluSg SINE Alu -16 294 1 1300 193 127 36 chr13 2985060 2985391 -98887778 + MER93b LTR ERV1 13 373 0 468 225 83 0 chr13 2985406 2985529 -98887640 - L1ME1 LINE L1 0 6334 6041 1884 172 0 0 chr13 2985541 2985832 -98887337 + AluJb SINE Alu 13 303 -9 1224 175 13 4 chr13 2985988 2986216 -98886953 - L1ME1 LINE L1 -134 6032 5803 24 53 0 0 chr13 2986297 2986335 -98886834 + AT_rich Low_complexity Low_complexity 1 38 0 892 179 24 126 chr13 2986356 2986602 -98886567 - AluJo SINE Alu -89 223 3 1460 193 56 11 chr13 2986632 2986901 -98886268 + AluJo SINE Alu 1 281 -31 324 0 0 0 chr13 2986901 2986937 -98886232 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2560 70 0 0 chr13 2987291 2987593 -98885576 - AluSx SINE Alu -10 302 1 1172 59 0 0 chr13 2987594 2987729 -98885440 - AluSq/x SINE Alu -177 135 1 913 171 96 64 chr13 2987734 2987985 -98885184 - MER33 DNA MER1_type -58 266 8 184 276 26 26 chr13 2988153 2988229 -98884940 - MIR3 SINE MIR -43 165 90 346 313 6 39 chr13 2988408 2988590 -98884579 - MER5A DNA MER1_type -13 176 1 1669 124 83 4 chr13 2988789 2989091 -98884078 + AluSx SINE Alu 5 327 0 23 33 0 0 chr13 2989130 2989160 -98884009 + AT_rich Low_complexity Low_complexity 1 30 0 1955 101 4 43 chr13 2989195 2989498 -98883671 + AluSq SINE Alu 17 308 0 22 0 0 0 chr13 2989566 2989588 -98883581 + AT_rich Low_complexity Low_complexity 1 22 0 1557 173 20 14 chr13 2989595 2989890 -98883279 + AluJo SINE Alu 1 297 -15 1631 175 158 25 chr13 2990487 2990645 -98882524 + MLT1C LTR MaLR 1 137 -330 2008 88 62 39 chr13 2990645 2990950 -98882219 + AluSx SINE Alu 1 312 0 1631 175 158 25 chr13 2990950 2991197 -98881972 + MLT1C LTR MaLR 137 460 -7 889 166 31 34 chr13 2991280 2991483 -98881686 - MLT1A1 LTR MaLR 0 374 144 1935 82 7 44 chr13 2993070 2993340 -98879829 + AluSq SINE Alu 34 293 -20 28 0 0 0 chr13 2993549 2993577 -98879592 + AT_rich Low_complexity Low_complexity 1 28 0 412 61 30 30 chr13 2993932 2993998 -98879171 - Alu SINE Alu -251 67 2 940 157 0 24 chr13 2994427 2994593 -98878576 - MLT1A1 LTR MaLR -203 162 1 272 271 47 9 chr13 2994857 2994964 -98878205 - L1ME LINE L1 -509 5612 5502 2465 53 10 3 chr13 2995046 2995348 -98877821 + AluY SINE Alu 1 304 -7 2317 91 0 7 chr13 2995358 2995672 -98877497 + AluSx SINE Alu 1 312 0 27 0 0 0 chr13 2995870 2995897 -98877272 + AT_rich Low_complexity Low_complexity 1 27 0 1849 227 75 98 chr13 2995953 2997099 -98876070 + L1MC5 LINE L1 6788 7907 -54 1047 110 0 0 chr13 2997159 2997295 -98875874 + AluSq/x SINE Alu 1 136 -177 2048 118 10 7 chr13 2997295 2997583 -98875586 + AluSx SINE Alu 1 289 -23 205 217 0 29 chr13 2998352 2998421 -98874748 + T-rich Low_complexity Low_complexity 5 71 0 764 169 0 0 chr13 2998424 2998542 -98874627 - FLAM_C SINE Alu -15 118 1 286 263 74 0 chr13 2998862 2998957 -98874212 - MLT1J LTR MaLR -98 413 312 775 62 71 18 chr13 3000810 3000922 -98872247 + MER30 DNA MER1_type 2 119 -111 2227 97 7 7 chr13 3000925 3001224 -98871945 + AluSx SINE Alu 1 299 -13 358 264 124 3 chr13 3001321 3001518 -98871651 + L1ME1 LINE L1 1325 1667 -5293 1522 287 85 36 chr13 3001534 3001627 -98871542 + L1ME1 LINE L1 1495 1582 -5556 1638 157 20 34 chr13 3001627 3001921 -98871248 - AluJb SINE Alu -22 290 1 1522 287 85 36 chr13 3001921 3002863 -98870306 + L1ME1 LINE L1 1582 2728 -4410 2541 60 0 10 chr13 3002869 3003183 -98869986 - AluY SINE Alu 0 311 1 708 90 0 63 chr13 3003234 3003345 -98869824 + MSTA LTR MaLR 1 104 -324 1910 122 3 83 chr13 3003345 3003672 -98869497 - AluSx SINE Alu -7 305 5 2299 105 0 0 chr13 3003684 3003979 -98869190 - AluSg SINE Alu -14 296 2 4898 207 60 100 chr13 3003982 3004623 -98868546 + L1ME1 LINE L1 4514 5179 -1798 2191 95 4 0 chr13 3004623 3004896 -98868273 + AluSc SINE Alu 1 274 -35 4898 207 60 100 chr13 3004896 3005040 -98868129 + L1ME1 LINE L1 5179 5327 -1650 4519 25 2 2 chr13 3005040 3005561 -98867608 + L1PA3 LINE L1 5634 6154 -1 4898 207 60 100 chr13 3005561 3006701 -98866468 + L1ME1 LINE L1 5327 6389 -588 669 202 0 0 chr13 3006701 3006815 -98866354 - FLAM_C SINE Alu -27 116 3 4898 207 60 100 chr13 3006815 3007314 -98865855 + L1ME1 LINE L1 6389 6907 -70 1899 84 4 48 chr13 3008075 3008348 -98864821 - AluSq SINE Alu -8 305 45 1082 217 63 3 chr13 3008577 3008863 -98864306 + MER33 DNA MER1_type 20 322 -2 27 29 0 0 chr13 3009018 3009052 -98864117 + AT_rich Low_complexity Low_complexity 1 34 0 1999 118 4 11 chr13 3009056 3009336 -98863833 - AluSx SINE Alu -34 278 1 273 57 0 0 chr13 3009359 3009394 -98863775 + (T)n Simple_repeat Simple_repeat 1 35 0 2268 103 3 0 chr13 3009495 3009796 -98863373 - AluSp SINE Alu -11 302 1 324 0 0 0 chr13 3009805 3009841 -98863328 + (T)n Simple_repeat Simple_repeat 1 36 0 273 200 0 14 chr13 3010115 3010185 -98862984 + AluY SINE Alu 129 197 -104 245 119 48 0 chr13 3010182 3010224 -98862945 + Alu SINE Alu 90 133 0 * 201 323 113 0 chr13 3010918 3011042 -98862127 + L3 LINE CR1 1276 1413 -164 306 304 0 0 chr13 3011174 3011332 -98861837 + (CA)n Simple_repeat Simple_repeat 1 158 0 324 210 0 0 chr13 3011338 3011400 -98861769 - MER5B DNA MER1_type -78 100 39 2267 131 0 6 chr13 3011984 3012298 -98860871 - AluSx SINE Alu 0 312 1 468 257 40 23 chr13 3012306 3012481 -98860688 - L1MC5 LINE L1 -37 7924 7747 399 58 0 0 chr13 3013105 3013157 -98860012 + MADE1 DNA Mariner 1 52 -28 522 128 0 0 chr13 3013497 3013575 -98859594 - AluSp/q SINE Alu -14 299 222 380 263 15 7 chr13 3013778 3013915 -98859254 + L1M4 LINE L1 4995 5132 -1014 2292 67 0 53 chr13 3013916 3014263 -98858906 + AluSq SINE Alu 1 331 0 378 291 268 0 chr13 3014339 3014518 -98858651 - MIR SINE MIR -1 261 35 1911 135 28 0 chr13 3014615 3014897 -98858272 + AluSx SINE Alu 3 292 -20 2287 120 3 0 chr13 3015633 3015941 -98857228 + AluSx SINE Alu 1 309 -3 962 133 0 14 chr13 3016086 3016229 -98856940 + FLAM_C SINE Alu 3 143 0 2161 124 17 0 chr13 3016979 3017270 -98855899 + AluSx SINE Alu 1 296 -16 2186 112 11 0 chr13 3017272 3017558 -98855611 + AluSx SINE Alu 1 289 -23 2266 116 3 0 chr13 3017560 3017863 -98855306 + AluSx SINE Alu 1 304 -8 343 291 68 0 chr13 3018505 3018622 -98854547 - L2 LINE L2 -25 3247 3123 219 139 0 0 chr13 3019461 3019497 -98853672 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 242 116 23 0 chr13 3019515 3019558 -98853611 + CT-rich Low_complexity Low_complexity 2 45 0 1799 180 0 19 chr13 3019558 3019875 -98853294 - AluJo SINE Alu -1 311 1 323 229 14 14 chr13 3020435 3020505 -98852664 + L2 LINE L2 3205 3274 -39 197 327 39 19 chr13 3020655 3020759 -98852410 + MIR SINE MIR 65 170 -92 1284 194 34 60 chr13 3021023 3021373 -98851796 + MER7C DNA MER2_type 1 341 -261 520 141 66 25 chr13 3021481 3021594 -98851575 + MER7C DNA MER2_type 315 432 -170 648 176 42 0 chr13 3021594 3021713 -98851456 + MER6 DNA MER2_type 1 124 -741 489 133 0 22 chr13 3021709 3021799 -98851370 + MER6 DNA MER2_type 778 865 0 * 1083 134 6 0 chr13 3021799 3021962 -98851207 + MER7C DNA MER2_type 449 612 0 2345 160 47 13 chr13 3022630 3023079 -98850090 - MER101 LTR ERV1 0 474 11 381 253 104 0 chr13 3023150 3023304 -98849865 - HAL1 LINE L1 -1599 908 739 219 36 0 0 chr13 3023468 3023496 -98849673 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2031 125 0 0 chr13 3023496 3023775 -98849394 - AluSx SINE Alu -33 279 1 208 182 18 55 chr13 3024525 3024580 -98848589 - L2 LINE L2 -1 3271 3219 600 330 51 3 chr13 3024749 3025103 -98848066 - L1ME LINE L1 -412 5758 5388 263 196 54 76 chr13 3025542 3025634 -98847535 + L2 LINE L2 2626 2715 -599 2208 118 3 3 chr13 3025634 3025931 -98847238 + AluSx SINE Alu 1 297 -15 1111 40 0 40 chr13 3025931 3026160 -98847009 + (TA)n Simple_repeat Simple_repeat 1 219 0 2166 89 3 74 chr13 3027526 3027862 -98845307 - AluSp SINE Alu -1 312 1 926 146 0 20 chr13 3027866 3028017 -98845152 - FRAM SINE Alu -8 168 21 2203 114 7 3 chr13 3029244 3029542 -98843627 - AluSq SINE Alu -14 299 1 1535 151 22 80 chr13 3029821 3029953 -98843216 + AluJb SINE Alu 1 139 -173 2211 135 0 3 chr13 3029953 3030264 -98842905 + AluSx SINE Alu 1 310 -2 1535 151 22 80 chr13 3030264 3030455 -98842714 + AluJb SINE Alu 139 305 -7 1737 164 12 49 chr13 3030692 3031016 -98842153 + AluJo SINE Alu 1 312 0 2026 135 0 13 chr13 3031017 3031320 -98841849 + AluJb SINE Alu 1 299 -13 2492 82 0 0 chr13 3031482 3031788 -98841381 + AluY SINE Alu 1 306 -5 2285 102 7 0 chr13 3031788 3032083 -98841086 + AluSp SINE Alu 1 297 -16 4198 126 38 7 chr13 3032083 3032934 -98840235 + L1MA4A LINE L1 5322 6302 -1 2199 113 0 25 chr13 3032935 3033255 -98839914 + AluSx SINE Alu 1 312 0 255 79 0 0 chr13 3034368 3034406 -98838763 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 560 103 32 174 chr13 3036504 3036611 -98836558 - FLAM_C SINE Alu -169 133 53 222 37 0 0 chr13 3036611 3036638 -98836531 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 560 103 32 174 chr13 3036638 3036685 -98836484 - FLAM_C SINE Alu -249 53 1 192 250 36 18 chr13 3037801 3037857 -98835312 + MIR SINE MIR 34 90 -118 2501 85 0 3 chr13 3038786 3039093 -98834076 + AluSc SINE Alu 1 306 -3 208 342 26 13 chr13 3039305 3039381 -98833788 + L2 LINE L2 3171 3247 -25 1391 166 158 4 chr13 3040643 3040902 -98832267 + AluJo SINE Alu 2 300 -2 350 256 19 30 chr13 3041115 3041219 -98831950 + MIR SINE MIR 65 162 -46 198 292 0 0 chr13 3041592 3041640 -98831529 + L2 LINE L2 3223 3270 -2 261 262 56 19 chr13 3042350 3042457 -98830712 + L2 LINE L2 2420 2530 -784 2045 144 3 10 chr13 3042473 3042771 -98830398 - AluSx SINE Alu -14 298 3 226 238 16 32 chr13 3043592 3043655 -98829514 + LTR16A LTR ERVL 245 306 -144 1589 143 47 14 chr13 3044185 3044464 -98828705 + AluJb SINE Alu 12 299 -13 378 68 85 0 chr13 3045500 3045559 -98827610 - U6 snRNA snRNA -43 64 1 1446 179 65 21 chr13 3045559 3045849 -98827320 - AluJo SINE Alu -9 303 1 1060 129 101 60 chr13 3045906 3046123 -98827046 + AluSg/x SINE Alu 80 305 -7 23 0 0 0 chr13 3046165 3046188 -98826981 + AT_rich Low_complexity Low_complexity 1 23 0 2175 111 0 0 chr13 3046192 3046471 -98826698 + AluY SINE Alu 1 279 -32 198 0 0 0 chr13 3046474 3046496 -98826673 + (TAA)n Simple_repeat Simple_repeat 3 24 0 22 56 0 0 chr13 3046556 3046592 -98826577 + AT_rich Low_complexity Low_complexity 1 36 0 231 367 14 50 chr13 3047122 3047261 -98825908 + MIR3 SINE MIR 68 201 -7 544 233 48 0 chr13 3047476 3047622 -98825547 + MLT1H LTR MaLR 75 227 -322 330 266 86 22 chr13 3047684 3047823 -98825346 + MLT1H LTR MaLR 341 488 -67 1003 135 0 0 chr13 3047836 3047977 -98825192 + AluSg/x SINE Alu 148 288 -24 642 265 24 6 chr13 3048104 3048274 -98824895 - L1ME3A LINE L1 -295 5875 5703 251 242 11 105 chr13 3048774 3048869 -98824300 - MER91B DNA MER1_type -104 86 1 180 294 94 24 chr13 3048869 3048947 -98824222 - L2 LINE L2 -52 3220 3137 1534 204 7 0 chr13 3049286 3049570 -98823599 + AluJo SINE Alu 1 286 -26 285 276 72 23 chr13 3049594 3049772 -98823397 + MIR3 SINE MIR 6 186 -76 2018 152 7 3 chr13 3049958 3050261 -98822908 - AluSx SINE Alu -8 304 1 2451 83 0 0 chr13 3050564 3050866 -98822303 + AluSc SINE Alu 1 302 -7 1558 179 74 14 chr13 3051326 3051689 -98821480 + L1MB4 LINE L1 5790 6174 -6 1358 123 202 40 chr13 3051778 3052031 -98821138 + AluSg SINE Alu 1 294 -6 305 103 0 118 chr13 3053745 3053813 -98819356 - Alu SINE Alu -9 293 234 850 129 0 0 chr13 3053832 3053948 -98819221 - AluJb SINE Alu -196 116 1 2149 75 78 24 chr13 3055144 3055438 -98817731 + AluY SINE Alu 1 310 -1 2228 87 7 0 chr13 3057051 3057358 -98815811 + AluY SINE Alu 1 311 0 2073 87 11 7 chr13 3057423 3057710 -98815459 + AluSx SINE Alu 5 292 -20 21 0 0 0 chr13 3058345 3058366 -98814803 + GC_rich Low_complexity Low_complexity 1 21 0 992 151 0 7 chr13 3058570 3058722 -98814447 + AluSg/x SINE Alu 149 299 -13 26 0 0 0 chr13 3058879 3058905 -98814264 + AT_rich Low_complexity Low_complexity 1 26 0 2333 134 27 2 chr13 3059035 3059439 -98813730 - L1MC1 LINE L1 -361 5972 5559 560 154 106 49 chr13 3059440 3059563 -98813606 + FLAM_C SINE Alu 1 130 -3 2349 92 3 3 chr13 3059611 3059916 -98813253 - AluSq SINE Alu -8 305 1 270 328 65 44 chr13 3060015 3060490 -98812679 + L2 LINE L2 2736 3260 -12 619 105 61 18 chr13 3060803 3060917 -98812252 + L1MC/D LINE L1 5453 5571 -762 1804 136 19 49 chr13 3060919 3061088 -98812081 - AluJo SINE Alu -13 299 127 2478 68 0 6 chr13 3061088 3061399 -98811770 - AluY SINE Alu -2 309 1 2360 100 13 0 chr13 3061399 3061699 -98811470 - AluSx SINE Alu -8 304 1 1804 136 19 49 chr13 3061699 3061836 -98811333 - AluJo SINE Alu -183 129 1 790 201 37 123 chr13 3061894 3062218 -98810951 + MLT1A1 LTR MaLR 1 296 -69 439 133 0 67 chr13 3062260 3062287 -98810882 + MLT1A1 LTR MaLR 282 309 -56 2251 114 7 0 chr13 3062287 3062593 -98810576 - AluSx SINE Alu -4 308 1 439 133 0 67 chr13 3062593 3062655 -98810514 + MLT1A1 LTR MaLR 309 365 0 278 321 58 21 chr13 3062711 3062901 -98810268 - L2 LINE L2 -552 2762 2566 2452 84 0 0 chr13 3063002 3063298 -98809871 + AluSq SINE Alu 1 296 -17 958 170 44 0 chr13 3063325 3063484 -98809685 + FAM SINE Alu 5 170 -5 2272 106 3 0 chr13 3063495 3063787 -98809382 + AluSx SINE Alu 4 296 -16 663 71 20 0 chr13 3063790 3063889 -98809280 - MER47A DNA MER2_type -85 281 181 1021 141 22 22 chr13 3063989 3064174 -98808995 - MER47A DNA MER2_type -158 208 24 1779 106 0 0 chr13 3064770 3064996 -98808173 - AluSg SINE Alu -84 226 1 815 138 0 32 chr13 3065007 3065130 -98808039 - FLAM_C SINE Alu -18 125 7 2331 87 3 0 chr13 3065649 3065937 -98807232 - AluSp SINE Alu -5 308 20 1364 197 23 83 chr13 3066280 3066666 -98806503 + MLT1A1 LTR MaLR 1 363 -2 261 0 0 0 chr13 3066672 3066701 -98806468 + (TG)n Simple_repeat Simple_repeat 1 29 0 975 157 41 15 chr13 3066754 3066951 -98806218 + L1MB2 LINE L1 5968 6169 -2 248 312 26 79 chr13 3067645 3067692 -98805477 - MER91B DNA MER1_type -10 180 132 1989 147 3 10 chr13 3067692 3067991 -98805178 + AluSx SINE Alu 6 302 -10 248 312 26 79 chr13 3067991 3068132 -98805037 - MER91B DNA MER1_type -58 132 2 662 241 27 68 chr13 3068371 3068512 -98804657 - MIR SINE MIR -21 241 111 1148 181 114 55 chr13 3068512 3068855 -98804314 - MLT1A1 LTR MaLR 0 365 3 662 241 27 68 chr13 3068855 3068933 -98804236 - MIR SINE MIR -151 111 31 254 65 87 0 chr13 3068986 3069032 -98804137 - FLAM_A SINE Alu -1 132 83 210 125 0 83 chr13 3069042 3069090 -98804079 + (TTTTTA)n Simple_repeat Simple_repeat 5 48 0 199 255 128 39 chr13 3069880 3069982 -98803187 - L2 LINE L2 0 3272 3162 661 153 68 2 chr13 3070120 3070363 -98802806 + AluJ SINE Alu 2 303 -9 2256 121 0 0 chr13 3070652 3070949 -98802220 + AluSx SINE Alu 1 297 -15 100 68 0 0 chr13 3070950 3071141 -98802028 + AT_rich Low_complexity Low_complexity 1 191 0 1282 277 134 34 chr13 3071183 3071883 -98801286 - L1MC4a LINE L1 -1779 6029 5260 928 131 0 22 chr13 3071884 3072021 -98801148 + AluJb SINE Alu 1 134 -178 21 0 0 0 chr13 3072023 3072044 -98801125 + AT_rich Low_complexity Low_complexity 1 21 0 827 148 28 7 chr13 3072122 3072264 -98800905 - FRAM SINE Alu -31 145 1 1555 174 26 0 chr13 3072322 3072586 -98800583 - AluJo SINE Alu -41 271 1 377 274 13 111 chr13 3072639 3072688 -98800481 + L2 LINE L2 3103 3155 -158 2105 144 3 3 chr13 3072688 3073000 -98800169 - AluSx SINE Alu 0 312 1 377 274 13 111 chr13 3073000 3073184 -98799985 + L2 LINE L2 3155 3313 0 2095 120 7 7 chr13 3073257 3073548 -98799621 + AluSx SINE Alu 1 291 -21 406 100 11 0 chr13 3073684 3073756 -98799413 + Alu SINE Alu 1 53 -255 297 188 0 0 chr13 3074207 3074255 -98798914 + MLT1A1 LTR MaLR 96 143 -222 1910 100 0 4 chr13 3074263 3074503 -98798666 - AluSc SINE Alu -53 256 18 * 2112 91 4 0 chr13 3074501 3074765 -98798404 - AluSp SINE Alu -48 265 1 958 124 14 0 chr13 3074773 3074918 -98798251 - AluSg/x SINE Alu -38 272 126 1084 155 52 0 chr13 3074920 3075114 -98798055 + MLT1A1 LTR MaLR 162 365 0 2279 29 39 72 chr13 3075735 3076041 -98797128 + AluY SINE Alu 1 296 -15 2357 97 0 0 chr13 3076759 3077057 -98796112 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr13 3077081 3077101 -98796068 + (CAA)n Simple_repeat Simple_repeat 2 21 0 461 65 0 0 chr13 3077160 3077222 -98795947 - Alu SINE Alu -10 300 239 2269 82 0 0 chr13 3077389 3077700 -98795469 + AluSg SINE Alu 9 310 0 278 276 125 48 chr13 3077771 3078011 -98795158 + L1ME3A LINE L1 5539 5810 -311 1974 133 7 0 chr13 3078011 3078296 -98794873 + AluSx SINE Alu 1 287 -25 278 276 125 48 chr13 3078296 3078366 -98794803 + L1ME3A LINE L1 5810 5873 -248 837 157 85 20 chr13 3078861 3079014 -98794155 + AluJb SINE Alu 137 299 -13 666 172 15 60 chr13 3079253 3079387 -98793782 - FLAM_C SINE Alu -1 132 5 1017 127 14 0 chr13 3079414 3079556 -98793613 - U4 snRNA snRNA -1 144 1 1858 99 4 11 chr13 3079624 3079886 -98793283 + AluSx SINE Alu 42 301 -11 2238 123 3 3 chr13 3080679 3080988 -98792181 + AluSq SINE Alu 1 309 -4 1939 142 33 0 chr13 3080993 3081295 -98791874 + AluJb SINE Alu 1 312 0 650 165 9 9 chr13 3081747 3081862 -98791307 + LTR56 LTR ERV1 4 118 -327 2497 65 0 0 chr13 3081866 3082160 -98791009 - AluY SINE Alu -17 294 1 21 36 0 0 chr13 3083166 3083194 -98789975 + AT_rich Low_complexity Low_complexity 1 28 0 349 260 30 0 chr13 3083202 3083302 -98789867 + L1ME3A LINE L1 6065 6167 -3 1403 212 42 3 chr13 3083302 3083585 -98789584 + AluJb SINE Alu 1 294 -18 2329 89 13 0 chr13 3083595 3083897 -98789272 + AluY SINE Alu 1 306 -5 2056 120 3 13 chr13 3083940 3084239 -98788930 + AluSx SINE Alu 1 296 -16 450 0 0 0 chr13 3085578 3085628 -98787541 + (TG)n Simple_repeat Simple_repeat 2 51 0 1729 124 29 18 chr13 3085636 3085911 -98787258 - AluJo SINE Alu -30 282 5 22 0 0 0 chr13 3086961 3086983 -98786186 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 3087419 3087440 -98785729 + AT_rich Low_complexity Low_complexity 1 21 0 195 261 15 46 chr13 3088608 3088673 -98784496 - MIR SINE MIR -4 258 196 2389 85 0 19 chr13 3089437 3089756 -98783413 + AluSq SINE Alu 1 313 0 233 242 0 30 chr13 3089926 3089992 -98783177 - L2 LINE L2 -325 2988 2925 30 59 0 0 chr13 3090596 3090647 -98782522 + GC_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr13 3090758 3090792 -98782377 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 3090835 3090856 -98782313 + GC_rich Low_complexity Low_complexity 1 21 0 2341 86 3 3 chr13 3091652 3091953 -98781216 + AluSp SINE Alu 2 302 -11 998 154 0 57 chr13 3092718 3092893 -98780276 - FRAM SINE Alu -11 165 1 290 244 48 48 chr13 3093095 3093343 -98779826 + L1ME4a LINE L1 5676 5915 -206 390 272 202 6 chr13 3093986 3094159 -98779010 - MIR SINE MIR -25 237 31 2299 113 0 0 chr13 3094212 3094512 -98778657 + AluSg SINE Alu 1 300 -10 2085 124 0 0 chr13 3094772 3095074 -98778095 + AluSx SINE Alu 1 302 0 1628 125 136 15 chr13 3095318 3095582 -98777587 + AluJb SINE Alu 1 296 -16 233 138 0 17 chr13 3095608 3095666 -98777503 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 440 177 38 20 chr13 3095680 3095818 -98777351 - AluJb SINE Alu -151 161 2 262 242 0 45 chr13 3095844 3095910 -98777259 + MER21B LTR ERV1 6 68 -795 2616 211 154 32 chr13 3095943 3096380 -98776789 + MER21B LTR ERV1 19 401 -462 2045 91 48 42 chr13 3096380 3096689 -98776480 - AluSx SINE Alu -1 311 1 2616 211 154 32 chr13 3096689 3096991 -98776178 + MER21B LTR ERV1 401 848 -15 1957 130 27 0 chr13 3097336 3097628 -98775541 - AluJb SINE Alu -8 304 5 2075 134 0 3 chr13 3097651 3097941 -98775228 - AluSx SINE Alu -23 289 1 338 37 0 37 chr13 3098012 3098066 -98775103 - L1MB3 LINE L1 -2 6181 6130 2125 70 11 15 chr13 3099079 3099349 -98773820 - AluY SINE Alu -11 300 32 1811 115 14 22 chr13 3099722 3100000 -98773169 - AluSx SINE Alu -12 300 25 931 162 61 71 chr13 3100850 3101048 -98772121 + AluJb SINE Alu 89 284 -28 2215 89 7 23 chr13 3101092 3101395 -98771774 + AluSg SINE Alu 1 298 -12 258 269 12 88 chr13 3101410 3101570 -98771599 - L1ME3 LINE L1 -81 6081 5934 1219 231 152 71 chr13 3101610 3102033 -98771136 - L1ME3 LINE L1 -219 5951 5564 1921 129 10 26 chr13 3102033 3102336 -98770833 - AluSq SINE Alu -15 298 1 1873 102 0 117 chr13 3102339 3102682 -98770487 - AluSx SINE Alu -9 303 1 1219 231 152 71 chr13 3102682 3102951 -98770218 - L1ME3 LINE L1 -607 5563 5197 2224 108 3 0 chr13 3104764 3105050 -98768119 - AluSx SINE Alu -25 287 1 1048 99 0 0 chr13 3105089 3105220 -98767949 + AluSq/x SINE Alu 1 131 -182 271 315 35 21 chr13 3106094 3106237 -98766932 + MIR3 SINE MIR 50 194 -14 727 208 126 26 chr13 3106250 3106481 -98766688 + MIR SINE MIR 7 260 -2 2001 101 45 3 chr13 3106531 3106818 -98766351 - AluY SINE Alu -12 299 1 1492 170 69 22 chr13 3106901 3107177 -98765992 + AluJo SINE Alu 4 292 -20 228 35 0 0 chr13 3107177 3107206 -98765963 + (CATA)n Simple_repeat Simple_repeat 2 30 0 382 292 90 7 chr13 3107254 3107398 -98765771 + MIR SINE MIR 29 184 -78 2328 113 0 0 chr13 3107632 3107932 -98765237 + AluSx SINE Alu 1 300 -12 1506 133 0 5 chr13 3108174 3108384 -98764785 + AluJb SINE Alu 1 209 -103 2216 121 82 3 chr13 3108384 3108611 -98764558 - MER83B LTR ERV1 0 378 114 1553 128 139 4 chr13 3108611 3108877 -98764292 + AluJb SINE Alu 1 302 0 2216 121 82 3 chr13 3108877 3108989 -98764180 - MER83B LTR ERV1 -264 114 12 286 108 0 0 chr13 3108988 3109025 -98764144 + AluJ/FRAM SINE Alu 230 266 -36 * 180 111 0 0 chr13 3109069 3109096 -98764073 + (A)n Simple_repeat Simple_repeat 1 27 0 1803 152 10 14 chr13 3109284 3109573 -98763596 + AluJb SINE Alu 1 288 -24 405 55 0 0 chr13 3110256 3110311 -98762858 - L1PB1 LINE L1 -3 6148 6094 2404 86 0 9 chr13 3110312 3110627 -98762542 - AluSx SINE Alu 0 312 1 2239 157 86 80 chr13 3110628 3110746 -98762423 - L1MB4 LINE L1 -43 6137 6021 439 152 248 38 chr13 3110746 3110851 -98762318 - FLAM_A SINE Alu -5 128 2 2239 157 86 80 chr13 3110851 3111323 -98761846 - L1MB4 LINE L1 -159 6021 5543 837 194 15 77 chr13 3112066 3112126 -98761043 - MLT2C1 LTR ERVL -4 393 331 2541 65 0 3 chr13 3112126 3112432 -98760737 + AluSg SINE Alu 2 306 -4 837 194 15 77 chr13 3112432 3112704 -98760465 - MLT2C1 LTR ERVL -66 331 18 419 202 121 0 chr13 3112962 3113061 -98760108 + Tigger4(Zombi) DNA MER2_type 2 112 -2619 1302 71 0 0 chr13 3113066 3113220 -98759949 - AluSg/x SINE Alu -11 299 146 1100 168 58 0 chr13 3113220 3113428 -98759741 + Tigger4(Zombi) DNA MER2_type 2511 2730 -1 2101 101 3 42 chr13 3113512 3113818 -98759351 - AluSx SINE Alu -17 295 2 387 242 73 84 chr13 3113988 3114061 -98759108 - MER104 DNA Tc2 -1720 178 106 2264 88 7 14 chr13 3114061 3114355 -98758814 + AluSx SINE Alu 1 292 -20 387 242 73 84 chr13 3114355 3114459 -98758710 - MER104 DNA Tc2 -1792 106 3 252 246 304 7 chr13 3116209 3116347 -98756822 + MIR SINE MIR 81 259 -3 370 238 0 12 chr13 3117494 3117574 -98755595 + Tigger5 DNA MER2_type 1 79 -2244 280 307 0 0 chr13 3117577 3117652 -98755517 - Tigger5 DNA MER2_type -7 2316 2242 * 356 197 56 0 chr13 3117646 3117717 -98755452 + Tigger5 DNA MER2_type 2246 2320 -3 2172 118 23 0 chr13 3118635 3118939 -98754230 + AluSx SINE Alu 1 311 -1 2162 102 0 0 chr13 3118978 3119252 -98753917 + AluSg SINE Alu 1 274 -36 231 36 0 0 chr13 3119254 3119282 -98753887 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 191 326 119 47 chr13 3119333 3119569 -98753600 - L2 LINE L2 -25 3247 2995 330 213 185 0 chr13 3119822 3119930 -98753239 + MIR SINE MIR 117 244 -18 353 274 85 81 chr13 3119973 3120221 -98752948 - L2 LINE L2 -52 3261 3013 344 206 103 59 chr13 3120222 3120358 -98752811 - MLT1K LTR MaLR -2 586 445 327 267 204 0 chr13 3120638 3120829 -98752340 - L2 LINE L2 -338 2976 2747 2812 83 8 0 chr13 3121020 3121380 -98751789 + THE1B LTR MaLR 2 364 0 887 269 201 5 chr13 3121380 3121819 -98751350 + L2 LINE L2 1689 2213 -1101 27 29 0 0 chr13 3121919 3121953 -98751216 + AT_rich Low_complexity Low_complexity 1 34 0 1832 74 0 0 chr13 3123409 3123625 -98749544 - AluSc SINE Alu -13 296 81 1864 158 3 0 chr13 3124343 3124628 -98748541 - AluJb SINE Alu -26 286 1 270 73 0 0 chr13 3124815 3124856 -98748313 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1313 160 0 50 chr13 3124859 3125097 -98748072 - AluJo SINE Alu -30 282 57 707 212 8 0 chr13 3125399 3125531 -98747638 + FLAM_A SINE Alu 1 133 0 246 282 58 0 chr13 3125862 3125965 -98747204 + L1ME LINE L1 5675 5783 -338 2349 86 0 10 chr13 3126213 3126514 -98746655 + AluSq SINE Alu 1 298 -15 468 289 0 0 chr13 3126514 3126694 -98746475 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 239 0 0 chr13 3126747 3126793 -98746376 - L1MC4 LINE L1 -1339 6703 6658 247 309 0 0 chr13 3126819 3126916 -98746253 - L1MC4 LINE L1 -1327 6668 6612 201 268 0 0 chr13 3126919 3126960 -98746209 + (CATA)n Simple_repeat Simple_repeat 4 44 0 241 267 35 12 chr13 3126961 3127047 -98746122 + L1MC4 LINE L1 6614 6701 -1341 201 195 0 0 chr13 3127050 3127091 -98746078 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2886 16 0 0 chr13 3127604 3127915 -98745254 + AluYb8 SINE Alu 1 311 -7 1978 136 71 0 chr13 3128067 3128391 -98744778 - MER7A DNA MER2_type 0 346 2 2204 101 3 13 chr13 3129170 3129476 -98743693 + AluSg SINE Alu 6 308 -2 1114 135 29 48 chr13 3129845 3130052 -98743117 - MER3 DNA MER1_type 0 209 7 367 260 185 33 chr13 3130168 3130595 -98742574 - L1ME4a LINE L1 -68 6053 5562 299 170 20 0 chr13 3131014 3131114 -98742055 - L1ME4a LINE L1 -723 5439 5365 2093 106 14 7 chr13 3131121 3131413 -98741756 - AluSx SINE Alu -18 294 1 2533 41 3 0 chr13 3131418 3131710 -98741459 - AluY SINE Alu -17 294 2 1691 138 36 56 chr13 3133823 3134127 -98739042 + AluSx SINE Alu 1 298 -14 367 175 299 0 chr13 3134185 3134282 -98738887 + FLAM_A SINE Alu 1 126 -7 1974 112 4 4 chr13 3134290 3134557 -98738612 + AluSx SINE Alu 1 267 -45 988 102 0 0 chr13 3134681 3134809 -98738360 + AluSq/x SINE Alu 8 135 -178 1851 126 3 50 chr13 3134809 3135111 -98738058 + AluSx SINE Alu 1 288 -24 34 42 0 0 chr13 3135114 3135162 -98738007 + AT_rich Low_complexity Low_complexity 1 48 0 582 89 0 170 chr13 3135419 3135467 -98737702 + L1MA3 LINE L1 6093 6148 -157 2191 110 0 13 chr13 3135467 3135767 -98737402 + AluSc SINE Alu 1 296 -13 582 89 0 170 chr13 3135767 3135779 -98737390 + L1MA3 LINE L1 6148 6160 -145 1424 175 110 0 chr13 3135779 3136042 -98737127 + AluJb SINE Alu 1 292 -20 582 89 0 170 chr13 3136042 3136115 -98737054 + L1MA3 LINE L1 6160 6204 -101 491 150 62 0 chr13 3136262 3136342 -98736827 + FRAM SINE Alu 64 148 -28 739 193 7 0 chr13 3136353 3136488 -98736681 + FLAM_C SINE Alu 2 137 -6 572 125 0 0 chr13 3136682 3136770 -98736399 - AluJo SINE Alu -11 301 214 975 152 0 7 chr13 3136770 3136921 -98736248 - AluJo SINE Alu -162 150 1 477 127 0 13 chr13 3136972 3137051 -98736118 - AluJ/FRAM SINE Alu -9 303 226 1953 132 21 0 chr13 3137086 3137373 -98735796 + AluSx SINE Alu 2 294 -18 2014 149 0 0 chr13 3137550 3137839 -98735330 + AluSx SINE Alu 4 292 -20 201 279 128 0 chr13 3138143 3138229 -98734940 - MIR SINE MIR -74 188 92 2569 77 0 0 chr13 3138358 3138668 -98734501 - AluY SINE Alu -1 310 1 182 302 38 0 chr13 3138906 3138959 -98734210 - L2 LINE L2 -200 3072 3018 21 71 0 0 chr13 3139160 3139202 -98733967 + AT_rich Low_complexity Low_complexity 1 42 0 876 206 11 17 chr13 3139265 3139440 -98733729 + FRAM SINE Alu 1 173 -3 7193 56 8 0 chr13 3139445 3139673 -98733496 + L1PA7 LINE L1 4771 4996 -1158 2333 64 0 48 chr13 3139673 3139984 -98733185 + AluY SINE Alu 1 296 -15 7193 56 8 0 chr13 3139984 3141136 -98732033 + L1PA7 LINE L1 4996 6154 0 2393 83 0 13 chr13 3141141 3141442 -98731727 + AluSp SINE Alu 1 297 -16 216 273 57 23 chr13 3141737 3141825 -98731344 + L2 LINE L2 1177 1267 -2047 25 0 0 0 chr13 3141825 3141850 -98731319 + AT_rich Low_complexity Low_complexity 1 25 0 7667 25 1 225 chr13 3141850 3143224 -98729945 - SVA Other Other 0 1386 321 513 158 0 0 chr13 3143364 3143446 -98729723 + AluSg/x SINE Alu 218 299 -11 5630 146 44 29 chr13 3143577 3144828 -98728341 - L1MA9 LINE L1 0 6312 5043 306 143 0 0 chr13 3144826 3144875 -98728294 + L1MA9 LINE L1 4989 5037 -1109 * 638 311 65 26 chr13 3144878 3145296 -98727873 + L2 LINE L2 1033 1466 -1848 5072 84 1 3 chr13 3145439 3146108 -98727061 - THE1A-int LTR MaLR -912 668 1 2729 86 11 0 chr13 3146108 3146459 -98726710 - THE1A LTR MaLR 0 355 1 331 244 118 16 chr13 3146480 3146607 -98726562 - L2 LINE L2 -940 2374 2235 2190 168 7 30 chr13 3146734 3147138 -98726031 + MSTD LTR MaLR 2 396 0 831 216 52 43 chr13 3147365 3147595 -98725574 - MLT1A1 LTR MaLR 0 365 134 296 95 24 0 chr13 3147595 3147637 -98725532 - MLT1A1 LTR MaLR 0 457 415 1449 83 0 0 chr13 3147637 3147830 -98725339 + L1MA2 LINE L1 6112 6304 0 1165 180 50 116 chr13 3147850 3148212 -98724957 - MLT1A1 LTR MaLR -25 340 3 2846 192 33 6 chr13 3148228 3148748 -98724421 - MLT1A1-int LTR MaLR -6 1729 1196 1025 218 92 23 chr13 3148750 3149012 -98724157 - MLT2B3 LTR ERVL -237 317 38 419 171 12 37 chr13 3149043 3149125 -98724044 - MLT2B3 LTR ERVL -472 82 3 * 912 121 7 7 chr13 3149125 3149265 -98723904 - MLT1A1 LTR MaLR -225 140 1 2207 109 3 13 chr13 3149410 3149714 -98723455 - AluSx SINE Alu -11 301 1 918 198 0 0 chr13 3149774 3149936 -98723233 - FAM SINE Alu -13 162 1 21 36 0 0 chr13 3150059 3150087 -98723082 + AT_rich Low_complexity Low_complexity 1 28 0 327 311 0 0 chr13 3150455 3150545 -98722624 - L1MC4 LINE L1 -1339 6703 6614 204 217 0 0 chr13 3150557 3150603 -98722566 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 233 0 17 chr13 3150606 3150666 -98722503 - L1MCa LINE L1 -4362 2064 2006 260 167 93 0 chr13 3150711 3150765 -98722404 - L1MCa LINE L1 -4362 2064 2006 567 212 24 12 chr13 3150776 3150941 -98722228 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 232 200 0 0 chr13 3150948 3151003 -98722166 - L1MC4 LINE L1 -1339 6703 6649 326 292 0 0 chr13 3151030 3151119 -98722050 - L1MC4 LINE L1 -1339 6703 6615 250 296 23 0 chr13 3151144 3151232 -98721937 - L1MC4 LINE L1 -1339 6703 6614 238 309 0 0 chr13 3151285 3151374 -98721795 + L1MD3 LINE L1 6612 6668 -1327 254 311 0 15 chr13 3151375 3151507 -98721662 + (TATG)n Simple_repeat Simple_repeat 1 130 0 236 217 0 0 chr13 3151512 3151558 -98721611 + L1MC4 LINE L1 6658 6703 -1339 386 229 0 8 chr13 3151565 3151677 -98721492 + (TA)n Simple_repeat Simple_repeat 1 112 0 2361 80 0 13 chr13 3151677 3151979 -98721190 - AluSq SINE Alu -15 298 1 427 303 89 10 chr13 3152019 3152260 -98720909 - L1ME LINE L1 -301 5869 5613 2620 45 0 13 chr13 3153369 3153680 -98719489 - AluY SINE Alu -4 307 1 540 277 31 67 chr13 3155297 3155521 -98717648 + L1ME3A LINE L1 5691 5906 -264 820 210 112 33 chr13 3155568 3155615 -98717554 + MSTA LTR MaLR 1 43 -385 2240 130 16 24 chr13 3155615 3155992 -98717177 + THE1C LTR MaLR 1 374 -1 820 210 112 33 chr13 3155992 3156158 -98717011 + MSTA LTR MaLR 43 231 -197 * 1176 140 34 0 chr13 3156143 3156321 -98716848 + MSTA LTR MaLR 245 428 0 9752 167 16 4 chr13 3156321 3157950 -98715219 + MSTA-int LTR MaLR 1 1649 -2 1992 148 154 0 chr13 3157958 3158329 -98714840 + MSTA LTR MaLR 1 428 0 248 203 27 0 chr13 3159442 3159516 -98713653 + CT-rich Low_complexity Low_complexity 3 78 0 450 0 0 0 chr13 3159736 3159786 -98713383 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 3473 156 84 90 chr13 3160147 3160594 -98712575 + L1MDa LINE L1 944 1392 -5148 2134 127 0 13 chr13 3160594 3160902 -98712267 + AluSx SINE Alu 1 304 -8 3473 156 84 90 chr13 3160902 3160923 -98712246 + L1MDa LINE L1 1392 1412 -5128 2268 107 0 0 chr13 3160923 3161223 -98711946 + AluSc SINE Alu 1 300 -9 3473 156 84 90 chr13 3161223 3161399 -98711770 + L1MDa LINE L1 1412 1588 -4952 1877 101 0 0 chr13 3161399 3161669 -98711500 + AluSg SINE Alu 36 305 0 3473 156 84 90 chr13 3161669 3161951 -98711218 + L1MDa LINE L1 1588 1869 -4671 2478 87 0 0 chr13 3161951 3162250 -98710919 + AluSg SINE Alu 1 299 -11 3473 156 84 90 chr13 3162250 3162345 -98710824 + L1MDa LINE L1 1869 1963 -4577 1752 174 0 0 chr13 3162345 3162673 -98710496 + AluJb SINE Alu 1 328 0 287 238 158 26 chr13 3162833 3162947 -98710222 - MLT1K LTR MaLR -358 230 87 609 239 15 27 chr13 3163038 3163207 -98709962 + L1M4 LINE L1 3455 3623 -2523 2021 127 27 0 chr13 3163207 3163499 -98709670 + AluSx SINE Alu 1 300 -12 609 239 15 27 chr13 3163499 3163551 -98709618 + L1M4 LINE L1 3623 3674 -2472 429 207 35 26 chr13 3163558 3163674 -98709495 - L1ME LINE L1 -374 5792 5676 2313 93 0 3 chr13 3163683 3163985 -98709184 - AluSg SINE Alu -9 301 1 1078 83 0 0 chr13 3163985 3164118 -98709051 - AluSc SINE Alu -176 133 1 1449 202 84 41 chr13 3164118 3164634 -98708535 - L1ME LINE L1 -676 5490 4998 2181 104 0 17 chr13 3164634 3164953 -98708216 + AluSq SINE Alu 1 314 0 1449 202 84 41 chr13 3164953 3164984 -98708185 - L1ME LINE L1 -1168 4998 4970 2521 57 0 0 chr13 3164984 3165281 -98707888 + AluY SINE Alu 1 297 -14 1449 202 84 41 chr13 3165281 3165292 -98707877 - L1ME LINE L1 -1196 4970 4961 2607 51 0 13 chr13 3165292 3165606 -98707563 + AluY SINE Alu 2 311 0 963 114 0 0 chr13 3166024 3166155 -98707014 + AluSg/x SINE Alu 162 292 -18 1253 211 29 76 chr13 3166158 3166302 -98706867 - L1ME LINE L1 -1214 4932 4783 1793 145 9 52 chr13 3166302 3166626 -98706543 - AluJb SINE Alu -2 310 1 1253 211 29 76 chr13 3166626 3166861 -98706308 - L1ME LINE L1 -1363 4783 4571 1717 143 48 0 chr13 3166861 3167133 -98706036 + AluJb SINE Alu 1 285 -27 2470 238 79 9 chr13 3167152 3167366 -98705803 - L1ME LINE L1 -2047 4099 3901 243 0 0 0 chr13 3167366 3167393 -98705776 + (TG)n Simple_repeat Simple_repeat 1 27 0 2470 238 79 9 chr13 3167393 3168090 -98705079 - L1ME LINE L1 -2245 3901 3124 2197 93 3 42 chr13 3168139 3168504 -98704665 + AluSp SINE Alu 1 313 0 2302 85 3 0 chr13 3168532 3168862 -98704307 + AluSp SINE Alu 1 331 0 445 271 119 96 chr13 3169956 3170138 -98703031 + MIR SINE MIR 5 197 -65 2203 99 0 3 chr13 3170138 3170446 -98702723 - AluSp SINE Alu 0 307 1 445 271 119 96 chr13 3170446 3170513 -98702656 + MIR SINE MIR 197 261 -1 1734 196 30 45 chr13 3170639 3171104 -98702065 - L1ME3A LINE L1 -83 6087 5630 1675 147 11 21 chr13 3171473 3171759 -98701410 + AluJb SINE Alu 1 283 -29 486 255 53 55 chr13 3171784 3172062 -98701107 + MIR SINE MIR 25 262 0 380 333 53 62 chr13 3172168 3172393 -98700776 + L2 LINE L2 3050 3272 0 2294 115 3 0 chr13 3172711 3173023 -98700146 + AluSq SINE Alu 1 313 0 290 298 95 18 chr13 3173143 3173311 -98699858 - L2 LINE L2 -122 3191 3011 * 343 252 134 39 chr13 3173310 3173437 -98699732 + L2 LINE L2 3175 3313 0 251 382 52 75 chr13 3173662 3174010 -98699159 + L2 LINE L2 2918 3257 -15 2335 92 3 13 chr13 3174223 3174529 -98698640 - AluSg SINE Alu -7 303 1 401 289 77 58 chr13 3174750 3174958 -98698211 + L3 LINE CR1 1366 1577 0 229 341 70 31 chr13 3175153 3175282 -98697887 + MIR SINE MIR 1 135 -73 2459 51 0 35 chr13 3175779 3176091 -98697078 + AluY SINE Alu 1 301 -10 22 35 0 0 chr13 3176968 3176997 -98696172 + AT_rich Low_complexity Low_complexity 1 29 0 265 339 36 9 chr13 3177188 3177300 -98695869 - MIR SINE MIR -141 121 7 2303 112 3 0 chr13 3177458 3177763 -98695406 - AluSx SINE Alu -6 306 1 332 238 62 0 chr13 3178581 3178661 -98694508 + L2 LINE L2 3224 3308 -5 428 301 75 40 chr13 3178857 3179056 -98694113 + MIR3 SINE MIR 2 207 -1 181 280 40 40 chr13 3179034 3179109 -98694060 + L2 LINE L2 3219 3293 -20 * 11979 91 21 1 chr13 3179132 3180898 -98692271 + L1PA7 LINE L1 8 1769 -4682 15126 88 39 0 chr13 3180898 3183158 -98690011 + L1PA7 LINE L1 3521 5861 -608 2039 92 0 26 chr13 3183158 3183429 -98689740 + AluSg SINE Alu 3 266 -44 15126 88 39 0 chr13 3183429 3184058 -98689111 + L1PA7 LINE L1 5861 6464 -5 11979 91 21 1 chr13 3184058 3184076 -98689093 + L1PA7 LINE L1 1769 1785 -4666 24 0 0 0 chr13 3185297 3185321 -98687848 + AT_rich Low_complexity Low_complexity 1 24 0 2415 66 0 20 chr13 3185681 3185983 -98687186 - AluY SINE Alu -15 296 1 779 150 72 26 chr13 3186034 3186227 -98686942 - LTR54 LTR ERV1 0 510 309 290 267 203 52 chr13 3186380 3186463 -98686706 + L2 LINE L2 2881 2950 -322 2362 94 0 0 chr13 3186463 3186771 -98686398 + AluSx SINE Alu 2 309 -3 290 267 203 52 chr13 3186771 3187021 -98686148 + L2 LINE L2 2950 3267 -5 336 286 68 42 chr13 3187228 3187420 -98685749 + MIR3 SINE MIR 3 199 -9 722 165 8 30 chr13 3188368 3188501 -98684668 - FLAM_C SINE Alu -3 130 1 1825 171 10 3 chr13 3189150 3189454 -98683715 - AluJo SINE Alu -6 306 1 29 47 0 0 chr13 3189455 3189498 -98683671 + AT_rich Low_complexity Low_complexity 1 43 0 1213 298 59 17 chr13 3189854 3190449 -98682720 + L1MEc LINE L1 31 650 -5746 2424 166 104 139 chr13 3190471 3190820 -98682349 + L1MC3 LINE L1 6757 7117 -668 259 209 15 15 chr13 3190820 3190887 -98682282 + MLT1F1 LTR MaLR 42 108 -459 2424 166 104 139 chr13 3190887 3191529 -98681640 + L1MC3 LINE L1 7117 7777 -8 238 301 21 11 chr13 3192091 3192184 -98680985 - MIR SINE MIR -149 113 20 23 0 0 0 chr13 3193469 3193492 -98679677 + AT_rich Low_complexity Low_complexity 1 23 0 2206 127 0 0 chr13 3194255 3194555 -98678614 + AluSx SINE Alu 1 300 -12 502 309 85 5 chr13 3194582 3194770 -98678399 - MIR SINE MIR -31 231 29 3309 174 28 38 chr13 3194849 3195611 -98677558 - L1MB8 LINE L1 -51 6127 5374 3430 158 64 97 chr13 3195963 3196887 -98676282 - MER21A LTR ERV1 -26 905 13 202 182 0 0 chr13 3196888 3196921 -98676248 + (TG)n Simple_repeat Simple_repeat 2 34 0 772 191 19 43 chr13 3196955 3197165 -98676004 - L1MC5 LINE L1 -498 7463 7259 21 0 0 0 chr13 3197222 3197243 -98675926 + AT_rich Low_complexity Low_complexity 1 21 0 230 143 24 0 chr13 3197274 3197316 -98675853 - L1MC5 LINE L1 -737 7224 7182 2245 120 3 0 chr13 3197431 3197731 -98675438 - AluSx SINE Alu -11 301 1 239 341 71 32 chr13 3197792 3197918 -98675251 + L2 LINE L2 3142 3272 0 1908 166 3 16 chr13 3198629 3198942 -98674227 + AluJb SINE Alu 1 309 -3 784 105 26 20 chr13 3198945 3199098 -98674071 + GA-rich Low_complexity Low_complexity 3 156 0 212 204 91 0 chr13 3200088 3200132 -98673037 - L2 LINE L2 -3 3310 3263 2152 145 75 91 chr13 3200208 3200339 -98672830 - Charlie1 DNA MER1_type -19 2742 2610 1564 184 3 51 chr13 3200339 3200468 -98672701 + AluJo SINE Alu 1 135 -177 2202 90 3 17 chr13 3200468 3200767 -98672402 - AluY SINE Alu -16 295 1 1564 184 3 51 chr13 3200767 3200952 -98672217 + AluJo SINE Alu 135 300 -12 2152 145 75 91 chr13 3200952 3201435 -98671734 - Charlie1 DNA MER1_type -151 2610 2138 425 244 9 26 chr13 3202024 3202139 -98671030 + MIR SINE MIR 148 260 -2 22 0 0 0 chr13 3202414 3202436 -98670733 + AT_rich Low_complexity Low_complexity 1 22 0 231 105 105 0 chr13 3202722 3202760 -98670409 + L2 LINE L2 2608 2649 -665 464 254 98 40 chr13 3202964 3203137 -98670032 - MIR SINE MIR -70 192 10 2162 129 10 3 chr13 3203398 3203701 -98669468 + AluSx SINE Alu 1 305 -7 26 50 0 0 chr13 3203701 3203741 -98669428 + AT_rich Low_complexity Low_complexity 1 40 0 188 316 18 0 chr13 3204088 3204145 -98669024 + MIR SINE MIR 203 260 -2 2382 74 0 7 chr13 3204432 3204729 -98668440 + AluY SINE Alu 1 295 -16 225 328 25 59 chr13 3206476 3206595 -98666574 + L2 LINE L2 2729 2843 -471 2393 96 0 6 chr13 3206598 3206912 -98666257 - AluSx SINE Alu 0 312 1 193 373 0 15 chr13 3207174 3207241 -98665928 + L2 LINE L2 3121 3186 -86 528 221 81 15 chr13 3207250 3207386 -98665783 - MIR SINE MIR -86 176 32 2278 115 0 3 chr13 3207556 3207861 -98665308 + AluSx SINE Alu 1 304 -8 187 161 0 0 chr13 3207882 3207913 -98665256 + L2 LINE L2 3028 3058 -255 2312 110 0 3 chr13 3208216 3208525 -98664644 - AluSg SINE Alu -2 308 1 757 231 53 36 chr13 3208729 3209032 -98664137 + L1MC4a LINE L1 5701 6017 -104 247 245 187 32 chr13 3209135 3209290 -98663879 + HAL1 LINE L1 2325 2503 -4 23 0 0 0 chr13 3209294 3209317 -98663852 + AT_rich Low_complexity Low_complexity 1 23 0 2123 130 0 13 chr13 3209317 3209632 -98663537 - AluSx SINE Alu -1 311 1 407 211 39 109 chr13 3210152 3210206 -98662963 + L2 LINE L2 3191 3247 -66 2543 53 0 0 chr13 3210206 3210510 -98662659 - AluY SINE Alu -7 304 1 407 211 39 109 chr13 3210510 3210583 -98662586 + L2 LINE L2 3247 3309 -4 247 254 97 53 chr13 3210592 3210706 -98662463 + MIR SINE MIR 96 214 -48 233 238 56 3 chr13 3210886 3211005 -98662164 - L1M LINE L1 -919 5384 5255 2067 138 3 0 chr13 3211008 3211313 -98661856 - AluJb SINE Alu -6 306 1 734 146 0 0 chr13 3211349 3211459 -98661710 - AluSq SINE Alu -13 300 191 929 99 0 0 chr13 3211459 3211580 -98661589 - AluSq SINE Alu -191 121 1 547 254 53 5 chr13 3211588 3211777 -98661392 + L1M4 LINE L1 5086 5283 -863 2214 149 0 0 chr13 3211834 3212142 -98661027 - AluSx SINE Alu -4 308 1 1480 198 37 13 chr13 3212403 3212896 -98660273 - MER74A LTR ERVL 0 558 7 2428 64 3 26 chr13 3212897 3213209 -98659960 + AluSc SINE Alu 5 309 0 236 299 83 49 chr13 3213231 3213327 -98659842 - MIR SINE MIR -103 159 55 2422 89 0 0 chr13 3213327 3213630 -98659539 + AluY SINE Alu 1 303 -8 236 299 83 49 chr13 3213630 3213677 -98659492 - MIR SINE MIR -207 55 11 24 32 0 0 chr13 3213701 3213732 -98659437 + AT_rich Low_complexity Low_complexity 1 31 0 239 353 15 0 chr13 3213878 3213946 -98659223 - MER91A DNA MER1_type -115 81 13 803 264 204 10 chr13 3214116 3214762 -98658407 - L2 LINE L2 -1 3312 2522 574 100 11 11 chr13 3214841 3214931 -98658238 + AluJ/FLAM SINE Alu 1 90 -222 2024 77 19 0 chr13 3214963 3215222 -98657947 - AluSx SINE Alu 0 312 49 1944 100 12 0 chr13 3215222 3215472 -98657697 - AluSx SINE Alu -58 254 1 216 97 0 0 chr13 3215488 3215519 -98657650 + (A)n Simple_repeat Simple_repeat 1 31 0 767 182 8 8 chr13 3216464 3216596 -98656573 - FLAM_A SINE Alu -1 132 1 557 172 49 8 chr13 3217090 3217212 -98655957 + FLAM_A SINE Alu 10 136 -6 22 0 0 0 chr13 3217353 3217375 -98655794 + AT_rich Low_complexity Low_complexity 1 22 0 496 129 0 9 chr13 3217426 3217644 -98655525 + AluJb SINE Alu 1 295 -17 1726 188 7 0 chr13 3217771 3218075 -98655094 - AluJo SINE Alu -6 306 1 768 270 95 18 chr13 3218086 3218412 -98654757 - Tigger8 DNA MER2_type -207 459 109 418 248 83 110 chr13 3218843 3219061 -98654108 + MER102a DNA MER1_type 106 317 -13 525 253 55 93 chr13 3219105 3219362 -98653807 + MER112 DNA MER1_type 8 254 -6 523 368 98 34 chr13 3219701 3220495 -98652674 + L2 LINE L2 951 1795 -1519 272 291 64 27 chr13 3220636 3220746 -98652423 + L2 LINE L2 3191 3304 -9 25 0 0 0 chr13 3220930 3220955 -98652214 + AT_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr13 3221313 3221363 -98651806 + AT_rich Low_complexity Low_complexity 1 50 0 635 286 134 6 chr13 3221767 3221844 -98651325 - L1MEc LINE L1 -4700 1714 1648 2001 134 0 0 chr13 3221844 3222143 -98651026 + AluSx SINE Alu 1 299 -13 635 286 134 6 chr13 3222143 3222564 -98650605 - L1MEc LINE L1 -4766 1648 1128 1195 267 71 72 chr13 3222659 3223248 -98649921 - L1MEc LINE L1 -4766 1630 1041 1947 141 0 0 chr13 3223248 3223546 -98649623 - AluSx SINE Alu -14 298 1 1195 267 71 72 chr13 3223546 3223814 -98649355 - L1MEc LINE L1 -5355 1041 774 259 224 20 0 chr13 3223824 3223873 -98649296 - AluJ/monomer SINE Alu -253 50 1 365 323 132 44 chr13 3223874 3224212 -98648957 - L1MEc LINE L1 -5711 685 283 2083 99 0 53 chr13 3224212 3224535 -98648634 - AluSx SINE Alu -6 306 1 365 323 132 44 chr13 3224535 3224719 -98648450 - L1MEc LINE L1 -6113 283 117 509 252 0 41 chr13 3224844 3224967 -98648202 + L2 LINE L2 3192 3309 -4 2426 112 25 6 chr13 3225173 3225529 -98647640 - THE1B LTR MaLR -1 363 1 3409 176 13 25 chr13 3225721 3226037 -98647132 + L1MB3 LINE L1 5511 5829 -354 2258 68 3 3 chr13 3226037 3226352 -98646817 + AluY SINE Alu 1 311 0 3409 176 13 25 chr13 3226352 3226706 -98646463 + L1MB3 LINE L1 5829 6173 -10 2122 100 0 3 chr13 3228328 3228618 -98644551 - AluSq SINE Alu -24 289 1 1128 154 9 23 chr13 3228845 3229065 -98644104 + MER47A DNA MER2_type 1 217 -149 1458 251 129 11 chr13 3229350 3229884 -98643285 + L1PA6 LINE L1 5323 5919 -235 * 4153 121 76 8 chr13 3229489 3230223 -98642946 + L1MA8 LINE L1 5505 6288 -3 198 274 74 42 chr13 3230324 3230419 -98642750 - MIR SINE MIR -52 210 113 409 297 113 5 chr13 3232293 3232488 -98640681 - MIR SINE MIR -23 239 24 323 229 12 169 chr13 3233396 3233562 -98639607 + MIR SINE MIR 117 256 -6 254 202 226 12 chr13 3233571 3233655 -98639514 + MIR SINE MIR 65 166 -96 347 48 0 0 chr13 3233658 3233700 -98639469 - 5S rRNA rRNA -79 42 1 512 314 34 64 chr13 3233805 3234009 -98639160 + MIR SINE MIR 62 259 -3 471 279 53 16 chr13 3234046 3234175 -98638994 - MIR SINE MIR -46 216 74 1653 141 50 7 chr13 3234175 3234474 -98638695 + AluSx SINE Alu 1 312 0 471 279 53 16 chr13 3234474 3234536 -98638633 - MIR SINE MIR -188 74 16 1026 173 10 19 chr13 3235321 3235529 -98637640 + AluJo SINE Alu 1 206 -106 1546 250 65 34 chr13 3235844 3236409 -98636760 - MLT1L LTR MaLR 0 615 33 293 266 237 7 chr13 3236812 3236949 -98636220 + MIR SINE MIR 14 176 -63 354 234 139 63 chr13 3236982 3237140 -98636029 - MLT1J2 LTR MaLR -18 432 263 250 188 187 0 chr13 3237237 3237310 -98635859 - MLT1J1 LTR MaLR -365 85 1 393 270 111 16 chr13 3237825 3238014 -98635155 + LTR16C LTR ERVL 285 491 0 1114 259 89 13 chr13 3238750 3239066 -98634103 + LTR16A LTR ERVL 111 450 0 441 271 170 37 chr13 3239359 3239577 -98633592 + L2 LINE L2 2458 2704 -610 371 357 51 5 chr13 3240136 3240332 -98632837 + L2 LINE L2 3106 3310 -3 363 319 28 14 chr13 3240894 3241038 -98632131 - MIR3 SINE MIR -30 178 33 1112 262 95 11 chr13 3242981 3243328 -98629841 + MLT1J LTR MaLR 1 376 -135 180 49 98 0 chr13 3243369 3243410 -98629759 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1698 111 111 0 chr13 3243439 3243701 -98629468 - MLT2D LTR ERVL -48 366 76 233 276 64 83 chr13 3243563 3243719 -98629450 - MLT1J2 LTR MaLR -399 225 73 * 327 321 170 51 chr13 3243719 3244171 -98628998 - L2 LINE L2 -573 2741 2236 268 261 43 22 chr13 3244565 3244657 -98628512 - L2 LINE L2 -955 2359 2266 391 292 28 14 chr13 3245290 3245434 -98627735 + MIR SINE MIR 109 254 -8 218 171 0 0 chr13 3246211 3246246 -98626923 + (ATG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr13 3246329 3246351 -98626818 + (TC)n Simple_repeat Simple_repeat 2 23 0 521 299 51 42 chr13 3246351 3246568 -98626601 - MIR SINE MIR -28 234 16 1590 123 7 45 chr13 3247529 3247821 -98625348 - L1MB3 LINE L1 -9 6174 5894 3210 157 16 53 chr13 3250496 3251141 -98622028 - L1MB3 LINE L1 -279 5904 5284 210 292 62 0 chr13 3251183 3251248 -98621921 - MIR SINE MIR -117 145 77 861 27 0 18 chr13 3251305 3251415 -98621754 - L1PA4 LINE L1 -3 6152 6045 6235 166 53 11 chr13 3251670 3252279 -98620890 + L1MA9 LINE L1 4022 4604 -1708 1963 141 7 0 chr13 3252279 3252584 -98620585 + AluSx SINE Alu 1 307 -5 6235 166 53 11 chr13 3252584 3254110 -98619059 + L1MA9 LINE L1 4604 6312 0 2184 162 23 88 chr13 3254138 3254443 -98618726 - MLT1C LTR MaLR 0 467 206 2068 129 0 7 chr13 3254443 3254753 -98618416 - AluSg SINE Alu -2 308 1 2184 162 23 88 chr13 3254753 3254947 -98618222 - MLT1C LTR MaLR -261 206 1 324 0 0 0 chr13 3255002 3255038 -98618131 + (CA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr13 3255206 3255228 -98617941 + AT_rich Low_complexity Low_complexity 1 22 0 2209 325 78 39 chr13 3255234 3257798 -98615371 - HERVL LTR ERVL -1465 4189 1469 628 279 32 36 chr13 3259114 3259365 -98613804 + MLT1J2 LTR MaLR 1 250 -200 1710 168 14 0 chr13 3259373 3259665 -98613504 - AluJb SINE Alu -16 296 1 200 327 37 28 chr13 3260807 3260914 -98612255 + MIR SINE MIR 7 114 -148 456 195 163 8 chr13 3260976 3261099 -98612070 - MER5A DNA MER1_type 0 189 48 290 118 97 65 chr13 3262838 3262931 -98610238 - MIR SINE MIR -55 207 112 1452 150 46 107 chr13 3264628 3264994 -98608175 + MER2 DNA MER2_type 1 344 0 986 204 88 19 chr13 3265357 3265617 -98607552 + L1ME1 LINE L1 5864 6141 -25 203 378 16 0 chr13 3265744 3265871 -98607298 + MIR SINE MIR 20 148 -114 517 198 90 9 chr13 3265969 3266080 -98607089 + L2 LINE L2 3191 3310 -3 3955 85 60 21 chr13 3266214 3266383 -98606786 + L1MA2 LINE L1 5660 5821 -483 1897 128 16 16 chr13 3266383 3266687 -98606482 + AluSc SINE Alu 1 304 -5 502 137 53 11 chr13 3266598 3267153 -98606016 + AluSp/q SINE Alu 215 313 0 3955 85 60 21 chr13 3266687 3267138 -98606031 + L1MA2 LINE L1 5821 6304 0 817 136 8 15 chr13 3267350 3267482 -98605687 + FLAM_C SINE Alu 12 142 -1 2469 63 0 7 chr13 3268288 3268587 -98604582 - AluSx SINE Alu -15 297 1 21 36 0 0 chr13 3268587 3268615 -98604554 + AT_rich Low_complexity Low_complexity 1 28 0 224 333 92 0 chr13 3268678 3268765 -98604404 + MIR SINE MIR 168 262 0 392 305 85 17 chr13 3268766 3268943 -98604226 + MIR SINE MIR 74 262 0 412 344 78 9 chr13 3269169 3269387 -98603782 - MIR SINE MIR -10 252 20 24 32 0 0 chr13 3269687 3269718 -98603451 + AT_rich Low_complexity Low_complexity 1 31 0 300 264 55 55 chr13 3270354 3270464 -98602705 - L2 LINE L2 -1 3271 3162 1410 179 71 24 chr13 3271769 3272109 -98601060 + MLT1C-int LTR MaLR 1015 1370 -1 1130 214 178 8 chr13 3272110 3272503 -98600666 + MLT1C LTR MaLR 1 460 -7 260 301 48 0 chr13 3273459 3273562 -98599607 + Charlie8 DNA MER1_type 35 142 -2275 27 29 0 0 chr13 3273914 3273948 -98599221 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr13 3273991 3274022 -98599147 + AT_rich Low_complexity Low_complexity 1 31 0 1994 168 7 3 chr13 3274749 3275058 -98598111 + AluSx SINE Alu 1 310 -2 1516 185 4 0 chr13 3275508 3275784 -98597385 + L1PB4 LINE L1 5868 6144 -12 363 298 79 0 chr13 3276872 3276986 -98596183 + L2 LINE L2 3190 3312 -1 1490 74 32 9 chr13 3277949 3278165 -98595004 + HUERS-P1 LTR ERV1 6043 6263 0 2095 56 70 0 chr13 3278165 3278452 -98594717 + LTR8 LTR ERV1 1 307 -384 658 115 0 0 chr13 3280116 3280220 -98592949 - MLT2B3 LTR ERVL -450 104 1 1030 168 25 20 chr13 3280269 3280466 -98592703 + AluJo SINE Alu 90 287 -25 1608 235 18 0 chr13 3280469 3280916 -98592253 + L1M4 LINE L1 4395 4849 -1297 1744 171 3 3 chr13 3280916 3281208 -98591961 - AluJo SINE Alu -20 292 1 1853 177 3 16 chr13 3281229 3281545 -98591624 - AluJb SINE Alu 0 312 1 389 271 25 0 chr13 3281545 3281667 -98591502 - L1M4 LINE L1 -1763 4383 4259 21 36 0 0 chr13 3283056 3283084 -98590085 + AT_rich Low_complexity Low_complexity 1 28 0 1170 187 5 0 chr13 3283084 3283298 -98589871 + Tigger2 DNA MER2_type 349 563 -2155 3503 120 31 55 chr13 3283309 3283984 -98589185 - L1MA3 LINE L1 -6 6299 5641 5545 151 19 34 chr13 3284165 3285674 -98587495 - L1MA3 LINE L1 -669 5636 4126 763 204 91 0 chr13 3285676 3285862 -98587307 + Tigger2 DNA MER2_type 555 757 -1961 1275 130 84 0 chr13 3285916 3286154 -98587015 + Tigger2 DNA MER2_type 2451 2708 -10 3098 256 66 49 chr13 3286163 3286741 -98586428 + L1MC4 LINE L1 6547 7114 -928 1722 179 0 10 chr13 3286741 3287032 -98586137 + AluJb SINE Alu 1 288 -24 3098 256 66 49 chr13 3287032 3287909 -98585260 + L1MC4 LINE L1 7114 8027 -15 1669 245 68 10 chr13 3287952 3288642 -98584527 + L1MC4 LINE L1 7012 7893 -149 318 67 0 0 chr13 3288709 3288754 -98584415 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 10688 42 10 1 chr13 3289163 3291254 -98581915 + L1PA4 LINE L1 4055 6150 -5 21 36 0 0 chr13 3291479 3291507 -98581662 + AT_rich Low_complexity Low_complexity 1 28 0 1592 188 65 0 chr13 3291905 3292197 -98580972 + AluJo SINE Alu 1 311 -1 356 167 0 13 chr13 3292213 3292291 -98580878 + HAL1 LINE L1 2129 2205 -302 321 222 161 61 chr13 3292316 3292496 -98580673 + HAL1 LINE L1 2309 2506 -1 710 281 134 15 chr13 3292519 3293104 -98580065 + L1MC4a LINE L1 5209 5492 -670 189 94 0 0 chr13 3293104 3293136 -98580033 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 710 281 134 15 chr13 3293136 3293173 -98579996 + L1MC4a LINE L1 5492 5523 -639 26 30 0 0 chr13 3293339 3293372 -98579797 + AT_rich Low_complexity Low_complexity 1 33 0 5705 128 18 0 chr13 3294043 3294231 -98578938 + L1PA15 LINE L1 4928 5111 -1054 1978 121 10 13 chr13 3294231 3294529 -98578640 + AluSq SINE Alu 1 297 -16 5705 128 18 0 chr13 3294529 3295574 -98577595 + L1PA15 LINE L1 5111 6165 0 377 129 194 0 chr13 3295669 3295762 -98577407 - L1M LINE L1 -916 5428 5318 2225 105 3 16 chr13 3295772 3296076 -98577093 - AluSx SINE Alu -2 310 11 1970 155 7 0 chr13 3296087 3296384 -98576785 - AluSx SINE Alu -13 299 1 564 209 24 67 chr13 3296388 3296438 -98576731 - L1M4 LINE L1 -816 5330 5279 2314 103 0 0 chr13 3296438 3296756 -98576413 - AluSq SINE Alu 0 313 1 564 209 24 67 chr13 3296756 3296844 -98576325 - L1M4 LINE L1 -867 5279 5189 2243 86 14 0 chr13 3296844 3297185 -98575984 - AluSp SINE Alu 0 346 2 564 209 24 67 chr13 3297185 3297297 -98575872 - L1M4 LINE L1 -957 5189 5089 335 259 0 86 chr13 3298439 3298555 -98574614 - MIR SINE MIR -70 192 87 1042 133 24 30 chr13 3298626 3298825 -98574344 - AluSg/x SINE Alu 0 312 133 353 259 12 0 chr13 3298943 3299028 -98574141 - MIR SINE MIR -121 141 56 2158 122 14 0 chr13 3299175 3299471 -98573698 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr13 3299546 3299568 -98573601 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 3300734 3300757 -98572412 + AT_rich Low_complexity Low_complexity 1 23 0 280 250 125 11 chr13 3301015 3301103 -98572066 - MIR SINE MIR -16 246 149 2230 224 48 21 chr13 3301203 3301656 -98571513 + L1ME2 LINE L1 5536 6173 -161 297 0 0 0 chr13 3301656 3301689 -98571480 + (TG)n Simple_repeat Simple_repeat 2 34 0 2230 224 48 21 chr13 3301689 3301856 -98571313 + L1ME2 LINE L1 6173 6334 0 2474 81 0 0 chr13 3301985 3302295 -98570874 + AluY SINE Alu 1 310 -1 22 0 0 0 chr13 3302295 3302317 -98570852 + AT_rich Low_complexity Low_complexity 1 22 0 386 280 74 16 chr13 3302355 3302544 -98570625 - L1ME LINE L1 -307 5814 5615 318 277 152 0 chr13 3302970 3303082 -98570087 - MIR SINE MIR -10 252 124 219 326 0 35 chr13 3303261 3303347 -98569822 - L2 LINE L2 0 3272 3190 2206 100 7 0 chr13 3303685 3304029 -98569140 - AluSq SINE Alu 0 346 1 1306 219 4 0 chr13 3304460 3304706 -98568463 - AluJo SINE Alu -27 285 39 197 321 19 0 chr13 3304996 3305049 -98568120 + L2 LINE L2 3138 3191 -81 2013 182 68 0 chr13 3305224 3305609 -98567560 + LTR57 LTR ERVL 1 411 0 25 0 0 0 chr13 3309334 3309359 -98563810 + GC_rich Low_complexity Low_complexity 1 25 0 693 229 156 29 chr13 3310436 3310641 -98562528 + MIR SINE MIR 11 241 -21 1904 106 0 109 chr13 3310841 3311180 -98561989 - AluSc SINE Alu -5 304 3 22 35 0 0 chr13 3311457 3311486 -98561683 + AT_rich Low_complexity Low_complexity 1 29 0 2488 87 0 0 chr13 3311615 3311925 -98561244 + AluSg SINE Alu 1 310 0 187 93 186 0 chr13 3312149 3312192 -98560977 + MIR SINE MIR 116 166 -96 225 229 0 0 chr13 3312714 3312762 -98560407 - L2 LINE L2 -2 3270 3223 468 299 34 0 chr13 3313387 3313534 -98559635 - MIR SINE MIR -42 220 69 718 221 126 26 chr13 3314548 3314738 -98558431 - MIR SINE MIR -18 244 36 255 31 0 0 chr13 3315037 3315069 -98558100 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 333 0 0 0 chr13 3315068 3315105 -98558064 + (CA)n Simple_repeat Simple_repeat 1 37 0 221 281 0 18 chr13 3315469 3315526 -98557643 + CT-rich Low_complexity Low_complexity 1 56 0 2772 131 25 18 chr13 3316148 3316660 -98556509 - L1MA9 LINE L1 -22 6290 5775 231 198 31 42 chr13 3316664 3316760 -98556409 + (CATATA)n Simple_repeat Simple_repeat 3 97 0 1258 167 27 0 chr13 3316760 3316982 -98556187 - L1MA9 LINE L1 -524 5788 5561 * 3562 156 53 3 chr13 3316977 3317618 -98555551 - L1MA9 LINE L1 -1777 4369 3697 8010 33 0 1 chr13 3317620 3319145 -98554024 + L1PA4 LINE L1 4629 6152 -3 226 289 48 0 chr13 3319237 3319320 -98553849 + L1ME LINE L1 5807 5893 -228 * 708 226 6 24 chr13 3319312 3319480 -98553689 - L1MA9 LINE L1 -2433 3713 3549 383 285 7 35 chr13 3319767 3319911 -98553258 + MIR SINE MIR 67 206 -56 422 209 146 0 chr13 3320262 3320372 -98552797 - MER103 DNA DNA -38 128 3 494 250 196 0 chr13 3320436 3320584 -98552585 + MIR SINE MIR 25 201 -61 362 245 229 42 chr13 3321829 3322021 -98551148 + MIR SINE MIR 14 241 -21 611 278 52 32 chr13 3322551 3322803 -98550366 + MIR SINE MIR 5 261 -1 183 279 16 16 chr13 3322962 3323023 -98550146 - MER5B DNA MER1_type -36 142 82 2383 86 3 0 chr13 3323696 3323998 -98549171 + AluY SINE Alu 1 303 -8 21 36 0 0 chr13 3324789 3324817 -98548352 + AT_rich Low_complexity Low_complexity 1 28 0 218 116 93 0 chr13 3324897 3324940 -98548229 + L2 LINE L2 3267 3313 0 2024 157 3 3 chr13 3325062 3325374 -98547795 + AluJb SINE Alu 1 312 0 305 242 45 0 chr13 3326825 3326891 -98546278 - MLT1G1 LTR MaLR -12 578 510 854 241 82 53 chr13 3326929 3327269 -98545900 - MLT1G1 LTR MaLR -232 363 14 25 0 0 0 chr13 3327681 3327706 -98545463 + AT_rich Low_complexity Low_complexity 1 25 0 1498 175 7 52 chr13 3327881 3328190 -98544979 + AluJo SINE Alu 1 295 -17 631 263 65 11 chr13 3328742 3328928 -98544241 - MIR SINE MIR -6 256 61 459 312 201 26 chr13 3329206 3329594 -98543575 + L1ME4a LINE L1 5355 5813 -357 265 247 84 48 chr13 3329895 3330061 -98543108 + L1ME4a LINE L1 5939 6110 -11 2474 133 80 15 chr13 3331395 3331795 -98541374 - MSTA LTR MaLR -2 426 1 352 258 98 8 chr13 3332018 3332150 -98541019 - MLT1I LTR MaLR 0 409 266 448 191 32 0 chr13 3332666 3332760 -98540409 + MER5A DNA MER1_type 9 105 -84 1455 145 13 4 chr13 3332788 3333016 -98540153 - AluSg/x SINE Alu 0 312 83 427 238 196 7 chr13 3333060 3333203 -98539966 - MER5B DNA MER1_type -3 175 6 2280 91 30 0 chr13 3333728 3334026 -98539143 - AluSg SINE Alu -3 307 1 298 291 119 102 chr13 3338164 3338459 -98534710 - L2 LINE L2 -79 3193 2894 1499 183 4 11 chr13 3339015 3339277 -98533892 - AluJo SINE Alu -24 288 29 239 209 30 15 chr13 3339697 3339764 -98533405 + GA-rich Low_complexity Low_complexity 3 70 0 254 306 105 0 chr13 3339846 3339970 -98533199 + MIR SINE MIR 72 208 -54 217 206 95 111 chr13 3340214 3340340 -98532829 + MIR SINE MIR 39 162 -100 252 248 0 25 chr13 3340423 3340544 -98532625 + (TTA)n Simple_repeat Simple_repeat 1 118 0 212 250 18 0 chr13 3341102 3341158 -98532011 + GA-rich Low_complexity Low_complexity 1 57 0 298 353 45 6 chr13 3341973 3342129 -98531040 - L1ME LINE L1 -487 5634 5473 1926 107 11 4 chr13 3342262 3342534 -98530635 + AluSg SINE Alu 37 310 0 262 248 57 133 chr13 3342804 3343014 -98530155 + MLT1L LTR MaLR 200 393 -222 3585 211 91 49 chr13 3343023 3344625 -98528544 - L1MDa LINE L1 -4642 1898 2 1667 214 112 28 chr13 3344618 3344764 -98528405 - L1ME LINE L1 -350 5816 5684 * 2359 113 17 14 chr13 3344764 3345118 -98528051 - THE1A LTR MaLR 0 355 1 1667 214 112 28 chr13 3345118 3345753 -98527416 - L1ME LINE L1 -482 5684 4981 1919 142 3 23 chr13 3345813 3345979 -98527190 - AluSx SINE Alu -12 300 141 2237 94 0 10 chr13 3345979 3346277 -98526892 - AluY SINE Alu -14 297 3 1919 142 3 23 chr13 3346277 3346412 -98526757 - AluSx SINE Alu -171 141 5 1304 231 40 20 chr13 3346417 3346768 -98526401 - L1ME LINE L1 -1142 5004 4647 725 189 0 0 chr13 3346777 3346888 -98526281 - FLAM_A SINE Alu -12 130 20 2351 75 0 0 chr13 3346983 3347263 -98525906 + AluY SINE Alu 1 280 -31 945 216 165 27 chr13 3347357 3347732 -98525437 - L1ME LINE L1 -1540 4606 4180 282 73 0 0 chr13 3347735 3347776 -98525393 + (TG)n Simple_repeat Simple_repeat 1 41 0 353 287 25 16 chr13 3347796 3347918 -98525251 - L1MC4a LINE L1 -1210 6598 6476 1271 282 59 27 chr13 3348386 3348908 -98524261 - L1MC4a LINE L1 -342 5822 5301 1705 206 71 22 chr13 3349007 3349459 -98523710 + L1MC4 LINE L1 6821 7294 -748 440 300 123 0 chr13 3349466 3349636 -98523533 - LTR16A LTR ERVL -5 445 255 1821 180 137 98 chr13 3349813 3349957 -98523212 + L1MC4 LINE L1 7299 7436 -606 14821 119 24 74 chr13 3349957 3351343 -98521826 + Tigger1 DNA MER2_type 2 1206 -1212 2443 71 0 0 chr13 3351343 3351637 -98521532 - AluY SINE Alu -16 295 2 14821 119 24 74 chr13 3351637 3352793 -98520376 + Tigger1 DNA MER2_type 1206 2418 0 1821 180 137 98 chr13 3352793 3352865 -98520304 + L1MC4 LINE L1 7436 7504 -538 1688 163 0 0 chr13 3352865 3353123 -98520046 + AluJo SINE Alu 1 258 -54 1821 180 137 98 chr13 3353123 3353167 -98520002 + L1MC4 LINE L1 7504 7545 -497 219 69 0 0 chr13 3353167 3353196 -98519973 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1821 180 137 98 chr13 3353196 3353434 -98519735 + L1MC4 LINE L1 7545 7772 -270 2229 123 0 0 chr13 3353434 3353744 -98519425 + AluSx SINE Alu 3 312 0 1821 180 137 98 chr13 3353744 3353958 -98519211 + L1MC4 LINE L1 7772 8042 0 2187 110 3 7 chr13 3353978 3354277 -98518892 + AluSx SINE Alu 4 301 -11 180 0 0 0 chr13 3354277 3354297 -98518872 + (TG)n Simple_repeat Simple_repeat 2 21 0 504 283 86 74 chr13 3354465 3354554 -98518615 - L1MC4a LINE L1 -1313 4833 4746 563 133 36 0 chr13 3354554 3354637 -98518532 - L1MC1 LINE L1 -9 6324 6239 504 283 86 74 chr13 3354637 3355025 -98518144 - L1MC4a LINE L1 -1400 4746 4364 2317 68 3 56 chr13 3355025 3355349 -98517820 - AluY SINE Alu -4 307 1 504 283 86 74 chr13 3355349 3355841 -98517328 - L1MC4a LINE L1 -1782 4364 3852 2350 107 0 0 chr13 3356120 3356420 -98516749 + AluSx SINE Alu 1 300 -12 183 311 98 30 chr13 3357265 3357397 -98515772 + MIR SINE MIR 120 260 -2 2005 121 25 0 chr13 3357528 3357810 -98515359 + AluSx SINE Alu 1 289 -23 211 247 26 26 chr13 3358406 3358421 -98514748 + (TA)n Simple_repeat Simple_repeat 1 15 -62 1820 167 0 3 chr13 3358421 3358708 -98514461 + AluJo SINE Alu 1 286 -26 211 247 26 26 chr13 3358708 3358769 -98514400 + (TA)n Simple_repeat Simple_repeat 14 77 0 24 0 0 0 chr13 3358859 3358883 -98514286 + AT_rich Low_complexity Low_complexity 1 24 0 247 367 83 35 chr13 3358891 3359120 -98514049 + MIR SINE MIR 9 248 -14 1101 235 202 19 chr13 3359331 3359928 -98513241 - L2 LINE L2 0 3313 2620 254 175 35 0 chr13 3359942 3359999 -98513170 - L1ME4a LINE L1 -81 6040 5982 26 0 0 0 chr13 3360217 3360243 -98512926 + AT_rich Low_complexity Low_complexity 1 26 0 524 314 53 19 chr13 3360525 3360789 -98512380 - L2 LINE L2 -453 2861 2589 216 0 0 0 chr13 3360924 3360948 -98512221 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 6221 66 37 51 chr13 3361094 3362870 -98510299 + SVA Other Other 207 1385 -1 968 243 148 29 chr13 3362885 3363264 -98509905 - MLT1H LTR MaLR -53 496 73 2093 106 46 0 chr13 3363282 3363564 -98509605 - AluSx SINE Alu -15 297 3 535 260 264 21 chr13 3363597 3363885 -98509284 - L2 LINE L2 -691 2623 2266 1921 149 17 14 chr13 3364392 3364688 -98508481 - AluJo SINE Alu -15 297 1 443 122 28 84 chr13 3365260 3365342 -98507827 + L1MB7 LINE L1 5824 5900 -284 2169 121 0 13 chr13 3365342 3365648 -98507521 + AluSq SINE Alu 1 302 -11 443 122 28 84 chr13 3365648 3365672 -98507497 + L1MB7 LINE L1 5900 5924 -260 337 82 41 0 chr13 3365704 3365753 -98507416 - U6 snRNA snRNA -50 57 7 899 250 49 0 chr13 3365754 3366018 -98507151 + L1MB7 LINE L1 5908 6184 0 * 2683 185 92 112 chr13 3366006 3367371 -98505798 + L1MEc LINE L1 1619 3010 -3205 621 189 18 9 chr13 3367371 3367482 -98505687 + AluSg/x SINE Alu 187 298 -11 1266 203 117 4 chr13 3367485 3367681 -98505488 - AluJo SINE Alu -6 296 61 2108 139 0 0 chr13 3367681 3367990 -98505179 + AluSx SINE Alu 4 312 0 1266 203 117 4 chr13 3367990 3368059 -98505110 - AluJo SINE Alu -241 61 1 2683 185 92 112 chr13 3368059 3368333 -98504836 + L1MEc LINE L1 3012 3296 -2919 2357 64 3 0 chr13 3368536 3368853 -98504316 - AluY SINE Alu 0 318 1 239 313 62 12 chr13 3368860 3368940 -98504229 + MIR3 SINE MIR 110 193 -15 360 0 0 0 chr13 3369268 3369308 -98503861 + (TG)n Simple_repeat Simple_repeat 2 41 0 527 257 0 0 chr13 3369542 3369647 -98503522 + MIR SINE MIR 6 110 -152 2227 96 0 14 chr13 3369758 3370051 -98503118 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr13 3372644 3372666 -98500503 + GC_rich Low_complexity Low_complexity 1 22 0 250 217 22 33 chr13 3372964 3373056 -98500113 + C-rich Low_complexity Low_complexity 6 96 0 1523 148 13 45 chr13 3373825 3374135 -98499034 - AluJb SINE Alu -12 300 1 553 198 54 9 chr13 3374578 3374689 -98498480 - MLT1C LTR MaLR -3 464 349 1703 115 23 4 chr13 3374695 3374955 -98498214 + MSTB LTR MaLR 2 266 -160 1018 142 32 0 chr13 3375179 3375334 -98497835 + MSTB LTR MaLR 267 426 0 622 226 13 27 chr13 3375339 3375588 -98497581 - MLT1C LTR MaLR -122 345 68 1912 149 3 3 chr13 3375588 3375889 -98497280 - AluSx SINE Alu -11 301 1 1391 99 0 5 chr13 3376102 3376293 -98496876 - AluSc SINE Alu -1 308 119 720 292 10 5 chr13 3376590 3376792 -98496377 - L2 LINE L2 -559 2755 2553 1916 119 7 46 chr13 3376804 3377106 -98496063 + AluSg SINE Alu 1 290 -20 2379 97 0 0 chr13 3377809 3378119 -98495050 + AluSg SINE Alu 1 310 0 2069 107 42 3 chr13 3378361 3378650 -98494519 + AluSx SINE Alu 1 300 -12 298 230 239 0 chr13 3378679 3378792 -98494377 + MER34 LTR ERV1 1 140 -402 * 1040 222 198 16 chr13 3378760 3379129 -98494040 + MER39 LTR ERV1 272 707 0 3409 144 26 42 chr13 3379898 3380523 -98492646 + MER49 LTR ERV1 9 623 -300 253 146 24 0 chr13 3380524 3380565 -98492604 + 5S rRNA rRNA 1 42 -79 * 1184 254 17 17 chr13 3380564 3380863 -98492306 + MER49 LTR ERV1 611 909 -14 1173 105 23 0 chr13 3380873 3381044 -98492125 - L1MA3 LINE L1 -1 6304 6130 1199 111 17 22 chr13 3381044 3381213 -98491956 - AluSg/x SINE Alu -22 288 119 574 148 0 0 chr13 3381213 3381294 -98491875 - AluJ/FRAM SINE Alu -11 301 221 6158 199 41 32 chr13 3381294 3381691 -98491478 - L1 LINE L1 -1761 5804 5412 1870 174 0 7 chr13 3381691 3381995 -98491174 - AluJb SINE Alu -10 302 1 6158 199 41 32 chr13 3381995 3382207 -98490962 - L1 LINE L1 -2153 5412 5204 2095 114 14 0 chr13 3382207 3382497 -98490672 - AluSq SINE Alu -19 294 1 6158 199 41 32 chr13 3382497 3383397 -98489772 - L1 LINE L1 -2361 5204 4314 2255 91 11 0 chr13 3383397 3383682 -98489487 - AluSp SINE Alu -24 289 2 6158 199 41 32 chr13 3383682 3383906 -98489263 - L1 LINE L1 -3251 4314 4094 2123 134 3 3 chr13 3383906 3384212 -98488957 - AluJb SINE Alu -6 306 1 6158 199 41 32 chr13 3384212 3384779 -98488390 - L1 LINE L1 -3471 4094 3438 857 140 13 7 chr13 3384796 3384946 -98488223 + L1M1 LINE L1 3009 3159 -4406 1133 84 0 39 chr13 3384950 3385105 -98488064 - AluY SINE Alu -162 149 1 16271 122 32 5 chr13 3385105 3387486 -98485683 - L1 LINE L1 -4611 2954 510 1057 139 47 142 chr13 3387509 3387783 -98485386 - L1MD3 LINE L1 -346 7649 7402 445 136 18 146 chr13 3387789 3387857 -98485312 - MLT1F1 LTR MaLR -449 118 68 2103 131 3 0 chr13 3387857 3388154 -98485015 + AluSx SINE Alu 1 298 -14 445 136 18 146 chr13 3388154 3388195 -98484974 - MLT1F1 LTR MaLR -499 68 23 586 195 8 25 chr13 3388196 3388314 -98484855 - L1MD3 LINE L1 -707 7288 7173 2406 67 3 0 chr13 3388490 3388787 -98484382 - AluY SINE Alu -13 298 1 335 307 79 8 chr13 3389259 3389386 -98483783 + L2 LINE L2 3178 3313 0 617 267 45 11 chr13 3389623 3389799 -98483370 + MIR SINE MIR 5 186 -76 243 0 0 0 chr13 3389814 3389841 -98483328 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1766 121 25 32 chr13 3389845 3390125 -98483044 - AluSx SINE Alu -33 279 2 303 282 23 8 chr13 3390134 3390265 -98482904 + (TA)n Simple_repeat Simple_repeat 1 133 0 23 0 0 0 chr13 3390365 3390388 -98482781 + AT_rich Low_complexity Low_complexity 1 23 0 207 151 38 0 chr13 3390654 3390707 -98482462 + A-rich Low_complexity Low_complexity 3 57 0 698 211 121 16 chr13 3390714 3390970 -98482199 - LTR50 LTR ERVL -506 289 7 370 238 76 9 chr13 3390974 3391129 -98482040 - L1MC/D LINE L1 -344 5818 5668 219 260 20 0 chr13 3391304 3391354 -98481815 + L2 LINE L2 3208 3258 -14 2435 70 0 10 chr13 3391646 3391948 -98481221 + AluSg SINE Alu 1 299 -11 1617 141 72 10 chr13 3391959 3392249 -98480920 + AluJo SINE Alu 1 308 -4 2243 112 3 0 chr13 3392249 3392553 -98480616 + AluSx SINE Alu 1 305 -7 487 131 30 0 chr13 3392565 3392664 -98480505 + GA-rich Low_complexity Low_complexity 2 103 0 1839 135 33 30 chr13 3393676 3393979 -98479190 + AluSx SINE Alu 1 304 -8 2447 58 3 10 chr13 3394180 3394489 -98478680 + AluY SINE Alu 1 307 -4 393 241 97 14 chr13 3394788 3394933 -98478236 - L1MC4 LINE L1 -1065 6977 6821 1271 286 102 42 chr13 3395032 3395554 -98477615 + L1MC4a LINE L1 5301 5822 -342 353 287 25 16 chr13 3396022 3396144 -98477025 + L1MC4a LINE L1 6476 6598 -1210 282 73 0 0 chr13 3396164 3396205 -98476964 + (CA)n Simple_repeat Simple_repeat 1 41 0 945 216 165 27 chr13 3396208 3396583 -98476586 + L1M4 LINE L1 4180 4606 -1540 2351 75 0 0 chr13 3396677 3396957 -98476212 - AluY SINE Alu -31 280 1 725 189 0 0 chr13 3397052 3397163 -98476006 + FLAM_A SINE Alu 20 130 -12 1279 234 40 20 chr13 3397172 3397523 -98475646 + L1M4 LINE L1 4647 5004 -1142 959 124 0 0 chr13 3397528 3397657 -98475512 + AluSq/x SINE Alu 5 133 -179 2240 93 3 7 chr13 3397663 3397965 -98475204 + AluY SINE Alu 3 303 -8 344 140 35 0 chr13 3398101 3398158 -98475011 + Alu SINE Alu 244 302 0 2184 98 7 3 chr13 3398186 3398481 -98474688 + AluSg SINE Alu 1 296 -14 217 330 96 52 chr13 3399190 3399535 -98473634 - L2 LINE L2 -1604 1710 1351 1777 142 38 10 chr13 3399772 3400060 -98473109 + AluJb SINE Alu 1 296 -16 244 288 166 31 chr13 3400136 3400299 -98472870 - MIR SINE MIR -22 240 56 272 200 40 0 chr13 3400837 3400887 -98472282 + L2 LINE L2 3183 3234 -38 289 347 21 11 chr13 3400994 3401089 -98472080 - L2 LINE L2 -35 3237 3142 471 209 209 12 chr13 3401253 3401425 -98471744 + MLT1G1 LTR MaLR 1 206 -389 1263 262 18 12 chr13 3401434 3401770 -98471399 + L1M4 LINE L1 4009 4346 -1800 5973 125 55 55 chr13 3402530 3402884 -98470285 - L1MA5A LINE L1 -2 6295 5943 2097 87 35 7 chr13 3402884 3403170 -98469999 - AluSq SINE Alu -19 294 1 5973 125 55 55 chr13 3403170 3403618 -98469551 - L1MA5A LINE L1 -354 5943 5497 1791 176 7 0 chr13 3403618 3403907 -98469262 + AluJo SINE Alu 1 291 -21 5973 125 55 55 chr13 3403907 3404483 -98468686 - L1MA5A LINE L1 -800 5497 4903 1283 81 17 17 chr13 3406611 3406783 -98466386 + AluY SINE Alu 1 172 -139 404 306 100 31 chr13 3407093 3407384 -98465785 - L2 LINE L2 -1120 2194 1884 1383 160 122 34 chr13 3407386 3407628 -98465541 + MER2 DNA MER2_type 1 275 -70 1638 174 31 7 chr13 3407628 3407921 -98465248 - AluJo SINE Alu -12 300 1 1383 160 122 34 chr13 3407921 3407972 -98465197 + MER2 DNA MER2_type 275 320 -25 2329 85 0 31 chr13 3408434 3408752 -98464417 + AluSq SINE Alu 6 313 0 197 402 10 0 chr13 3409214 3409316 -98463853 - L2 LINE L2 -2440 874 772 1597 163 41 37 chr13 3409576 3409870 -98463299 + AluJo SINE Alu 1 295 -17 445 308 123 22 chr13 3410197 3410424 -98462745 + MIR SINE MIR 3 252 -10 281 212 214 3 chr13 3410422 3410504 -98462665 + MIR SINE MIR 18 115 -93 * 1701 187 10 13 chr13 3411702 3412012 -98461157 + AluJo SINE Alu 1 309 -3 795 98 71 0 chr13 3412115 3412227 -98460942 - AluSg/x SINE Alu -16 296 177 2466 61 0 0 chr13 3412588 3412884 -98460285 + AluY SINE Alu 3 298 -13 465 296 192 34 chr13 3413055 3413613 -98459556 + L2 LINE L2 1443 2088 -1226 180 0 0 0 chr13 3415531 3415551 -98457618 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 219 204 102 0 chr13 3416451 3416500 -98456669 + MIR SINE MIR 127 180 -82 469 323 112 50 chr13 3416582 3417084 -98456085 + L2 LINE L2 2036 2568 -746 392 329 44 93 chr13 3417194 3417604 -98455565 + L2 LINE L2 2882 3271 -1 311 191 0 0 chr13 3418317 3418380 -98454789 + U13 snRNA snRNA 14 76 -28 859 214 40 40 chr13 3419675 3419951 -98453218 + L1MC5 LINE L1 7250 7525 -436 1597 164 0 64 chr13 3419955 3420253 -98452916 + AluJb SINE Alu 1 279 -33 342 0 0 0 chr13 3420257 3420295 -98452874 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3673 166 75 39 chr13 3420295 3420718 -98452451 + L1MB3 LINE L1 5143 5549 -634 2675 45 3 0 chr13 3420718 3421027 -98452142 + AluY SINE Alu 1 310 -1 3673 166 75 39 chr13 3421027 3421603 -98451566 + L1MB3 LINE L1 5549 6181 -2 717 213 80 82 chr13 3421608 3422022 -98451147 + L1MC5 LINE L1 7513 7925 -36 309 226 45 60 chr13 3422414 3422547 -98450622 - MLT1K LTR MaLR -317 271 141 1751 156 195 55 chr13 3422889 3423345 -98449824 - MLT2B1 LTR ERVL 0 520 1 262 265 0 15 chr13 3423715 3423783 -98449386 + MIR3 SINE MIR 118 184 -24 1687 185 26 0 chr13 3423880 3424160 -98449009 + L1MD3 LINE L1 7619 7911 -84 1578 138 116 8 chr13 3424160 3424428 -98448741 + AluJb SINE Alu 1 297 -15 1687 185 26 0 chr13 3424428 3424498 -98448671 + L1MD3 LINE L1 7911 7978 -17 871 199 137 26 chr13 3425772 3426361 -98446808 + L1ME1 LINE L1 5507 6148 -18 289 330 99 42 chr13 3426434 3426816 -98446353 - L2 LINE L2 -930 2384 1981 1916 105 72 4 chr13 3426855 3427132 -98446037 + AluSp SINE Alu 5 300 -13 212 341 59 29 chr13 3427177 3427347 -98445822 - L2 LINE L2 -1367 1947 1773 285 146 0 0 chr13 3428394 3428442 -98444727 + (TG)n Simple_repeat Simple_repeat 2 49 0 2011 94 0 14 chr13 3428443 3428719 -98444450 - AluSx SINE Alu -40 272 1 1488 208 83 48 chr13 3429456 3430028 -98443141 + L1ME2 LINE L1 5407 6027 -137 334 277 39 52 chr13 3430090 3430245 -98442924 + L1MC5 LINE L1 7774 7926 -35 2490 54 0 3 chr13 3430831 3431127 -98442042 + AluY SINE Alu 1 295 -16 2256 68 7 31 chr13 3431382 3431676 -98441493 + AluY SINE Alu 9 295 -16 676 153 59 9 chr13 3431978 3432149 -98441020 + Tigger3(Golem) DNA MER2_type 1 2995 -34 358 294 30 96 chr13 3432238 3432435 -98440734 - L1MC4a LINE L1 -1757 6051 5868 2346 87 7 13 chr13 3432449 3432758 -98440411 - AluSx SINE Alu -5 307 1 1250 228 27 54 chr13 3432817 3433225 -98439944 + L1MD1 LINE L1 3995 4391 -1755 2308 193 90 32 chr13 3433241 3433499 -98439670 + L1MD1 LINE L1 4897 5139 -1103 2141 65 0 14 chr13 3433499 3433775 -98439394 + AluY SINE Alu 35 306 -5 2308 193 90 32 chr13 3433775 3434732 -98438437 + L1MD1 LINE L1 5139 6231 -11 30 59 0 0 chr13 3436060 3436111 -98437058 + AT_rich Low_complexity Low_complexity 1 51 0 565 206 201 32 chr13 3436513 3436732 -98436437 - MLT1H LTR MaLR -20 529 274 663 200 145 0 chr13 3436732 3436877 -98436292 - MER58B DNA MER1_type 0 341 176 264 250 60 0 chr13 3436898 3436982 -98436187 + MIR SINE MIR 100 188 -74 258 351 36 40 chr13 3437360 3437582 -98435587 - L2 LINE L2 -208 3064 2844 2360 89 3 0 chr13 3437790 3438092 -98435077 + AluY SINE Alu 1 303 -8 308 179 0 0 chr13 3438229 3438285 -98434884 + Alu SINE Alu 243 298 -2 2159 102 7 3 chr13 3438312 3438607 -98434562 + AluSg SINE Alu 1 296 -14 239 335 96 47 chr13 3439316 3439659 -98433510 - L2 LINE L2 -1604 1710 1351 1780 142 38 10 chr13 3439896 3440184 -98432985 + AluJb SINE Alu 1 296 -16 254 288 166 31 chr13 3440260 3440423 -98432746 - MIR SINE MIR -22 240 56 239 234 0 39 chr13 3440895 3440972 -98432197 + T-rich Low_complexity Low_complexity 2 75 0 589 168 117 51 chr13 3441283 3441480 -98431689 + MER63A DNA MER1_type 1 210 0 290 340 30 11 chr13 3443498 3443763 -98429406 + L1MC/D LINE L1 4080 4349 -1797 297 263 19 58 chr13 3443785 3443941 -98429228 + HAL1b LINE L1 1187 1336 -12 318 304 89 14 chr13 3443980 3444194 -98428975 + L1MC/D LINE L1 4358 4587 -1559 243 287 56 84 chr13 3444201 3444595 -98428574 - MLT1I LTR MaLR -8 401 19 2275 83 0 0 chr13 3444666 3444943 -98428226 + AluY SINE Alu 17 293 -18 412 317 75 40 chr13 3444971 3445288 -98427881 + L1MC/D LINE L1 4733 5079 -1067 1896 127 53 13 chr13 3445493 3445793 -98427376 + AluSx SINE Alu 1 312 0 1377 237 40 21 chr13 3445874 3446250 -98426919 - LTR40a LTR ERVL 0 519 137 1023 98 147 18 chr13 3446267 3446430 -98426739 - AluSg SINE Alu -110 200 17 340 160 40 110 chr13 3446431 3446502 -98426667 - LTR40a LTR ERVL -423 96 32 2293 98 0 3 chr13 3446502 3446799 -98426370 + AluY SINE Alu 1 296 -15 340 160 40 110 chr13 3446799 3446827 -98426342 - LTR40a LTR ERVL -487 32 4 398 222 41 107 chr13 3446838 3446962 -98426207 + L1MC/D LINE L1 5302 5404 -2404 1963 119 4 0 chr13 3446962 3447240 -98425929 + AluSx SINE Alu 1 279 -33 398 222 41 107 chr13 3447240 3447358 -98425811 + L1MC/D LINE L1 5404 5528 -2280 2428 94 7 0 chr13 3447533 3447841 -98425328 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr13 3447997 3448019 -98425150 + AT_rich Low_complexity Low_complexity 1 22 0 1713 168 24 20 chr13 3448156 3448453 -98424716 + AluJo SINE Alu 1 298 -14 1764 172 10 3 chr13 3448480 3448783 -98424386 - AluJo SINE Alu -7 305 1 1823 159 34 0 chr13 3448822 3449117 -98424052 - AluSx SINE Alu -7 305 1 2244 86 0 22 chr13 3449119 3449433 -98423736 - AluY SINE Alu -1 310 4 305 284 80 11 chr13 3449451 3449539 -98423630 + MIR SINE MIR 19 112 -150 286 250 148 56 chr13 3449553 3449661 -98423508 - MIR SINE MIR -139 123 6 823 198 25 1 chr13 3449703 3449898 -98423271 - MLT1A2 LTR MaLR 0 390 190 2189 96 7 0 chr13 3450376 3450657 -98422512 + AluSg SINE Alu 1 283 -27 417 138 0 69 chr13 3451271 3451358 -98421811 + AluJ/FRAM SINE Alu 225 305 -7 772 180 0 14 chr13 3451380 3451519 -98421650 + FLAM_C SINE Alu 1 137 -6 1092 210 98 0 chr13 3453822 3454098 -98419071 + L1MC4 LINE L1 6821 7123 -919 206 300 7 79 chr13 3454545 3454669 -98418500 + L2 LINE L2 2869 2983 -289 2503 65 0 7 chr13 3454669 3454977 -98418192 - AluY SINE Alu -5 306 1 206 300 7 79 chr13 3454977 3454992 -98418177 + L2 LINE L2 2983 2998 -274 260 316 61 10 chr13 3455054 3455152 -98418017 + L2 LINE L2 3169 3271 -1 180 111 0 0 chr13 3455155 3455182 -98417987 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 254 301 96 0 chr13 3455230 3455303 -98417866 - L2 LINE L2 -38 3234 3155 21 82 0 0 chr13 3455333 3455382 -98417787 + AT_rich Low_complexity Low_complexity 1 49 0 372 278 137 50 chr13 3455864 3456227 -98416942 + L2 LINE L2 2260 2654 -660 509 282 57 62 chr13 3456227 3456436 -98416733 + MIR SINE MIR 4 211 -51 333 337 153 12 chr13 3456504 3456753 -98416416 + L2 LINE L2 2687 2970 -344 202 298 76 15 chr13 3456908 3457039 -98416130 + L2 LINE L2 3171 3309 -4 2148 126 0 16 chr13 3457078 3457388 -98415781 + AluSx SINE Alu 1 305 -7 1959 125 36 0 chr13 3457666 3457947 -98415222 + AluSq SINE Alu 1 291 -22 4136 225 121 44 chr13 3457951 3459307 -98413862 + L1M4c LINE L1 11 1525 -4859 2359 83 3 0 chr13 3459307 3459608 -98413561 + AluY SINE Alu 1 302 -9 4136 225 121 44 chr13 3459608 3459945 -98413224 + L1M4c LINE L1 1525 1835 -4549 594 180 109 52 chr13 3459955 3460097 -98413072 + L1M4c LINE L1 3085 3218 -3164 2186 95 14 14 chr13 3460097 3460391 -98412778 - AluSq SINE Alu -19 294 1 594 180 109 52 chr13 3460391 3460515 -98412654 + L1M4c LINE L1 3218 3366 -3016 357 192 0 14 chr13 3460514 3460587 -98412582 + L1MCa LINE L1 262 333 -6093 * 2259 112 3 13 chr13 3460587 3460901 -98412268 + AluSp SINE Alu 1 311 -2 2214 128 0 6 chr13 3460913 3461225 -98411944 + AluSx SINE Alu 3 312 0 441 192 23 0 chr13 3461225 3461355 -98411814 + GA-rich Low_complexity Low_complexity 2 134 0 303 140 18 0 chr13 3461366 3461423 -98411746 + L1MCa LINE L1 2128 2185 -4241 1048 151 22 45 chr13 3461424 3461603 -98411566 + AluJo SINE Alu 108 282 -30 300 180 0 0 chr13 3461643 3461704 -98411465 + L1MCa LINE L1 2171 2231 -4195 383 300 95 5 chr13 3461745 3462011 -98411158 + L2 LINE L2 2768 3049 -264 213 157 0 86 chr13 3462666 3462736 -98410433 + (TA)n Simple_repeat Simple_repeat 1 64 0 282 193 138 28 chr13 3462772 3462917 -98410252 - L1ME LINE L1 -280 5841 5681 2195 232 97 32 chr13 3463865 3464437 -98408732 - L1ME3A LINE L1 -76 6094 5458 2392 84 0 0 chr13 3464437 3464733 -98408436 - AluY SINE Alu -15 296 1 2195 232 97 32 chr13 3464733 3464931 -98408238 - L1ME3A LINE L1 -712 5458 5274 405 298 89 76 chr13 3465811 3466036 -98407133 - L2 LINE L2 -1 3271 3044 585 286 84 0 chr13 3466934 3467112 -98406057 + MIR SINE MIR 64 256 -6 2415 63 0 0 chr13 3467855 3468141 -98405028 + AluY SINE Alu 2 287 -24 185 0 40 0 chr13 3468148 3468173 -98404996 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2278 92 3 3 chr13 3468353 3468648 -98404521 - AluSc SINE Alu -14 295 1 2281 104 0 0 chr13 3468746 3469045 -98404124 + AluSg SINE Alu 1 299 -11 2344 79 7 3 chr13 3469045 3469350 -98403819 + AluY SINE Alu 1 306 -5 1812 176 20 20 chr13 3469578 3469884 -98403285 + AluJb SINE Alu 1 306 -6 255 200 40 0 chr13 3470084 3470134 -98403035 + AluJb SINE Alu 76 127 -175 1685 155 3 59 chr13 3470800 3471122 -98402047 + AluJb SINE Alu 1 304 -8 228 240 147 0 chr13 3471246 3471321 -98401848 - MLT1E LTR MaLR -14 579 494 2026 141 0 0 chr13 3474010 3474308 -98398861 - AluSx SINE Alu -14 298 1 2010 115 3 34 chr13 3474626 3474921 -98398248 + AluSx SINE Alu 2 287 -25 2371 90 0 3 chr13 3477071 3477370 -98395799 + AluSx SINE Alu 1 298 -14 551 260 98 86 chr13 3477592 3478176 -98394993 - MER109 Unknown Unknown -643 1789 29 294 145 81 48 chr13 3478260 3478322 -98394847 - MER2 DNA MER2_type -271 74 11 * 1220 146 66 134 chr13 3478278 3478365 -98394804 + MER2 DNA MER2_type 11 102 -243 1786 153 7 0 chr13 3478365 3478639 -98394530 + AluJb SINE Alu 4 279 -33 1220 146 66 134 chr13 3478639 3478794 -98394375 + MER2 DNA MER2_type 102 224 -121 1938 89 16 104 chr13 3478794 3479110 -98394059 - AluSp SINE Alu -25 288 1 1220 146 66 134 chr13 3479110 3479216 -98393953 + MER2 DNA MER2_type 224 336 -9 598 161 0 0 chr13 3479262 3479349 -98393820 + 5S rRNA rRNA 3 89 -32 1935 155 24 0 chr13 3479583 3479880 -98393289 - AluSq SINE Alu -9 304 1 23 0 0 0 chr13 3479904 3479927 -98393242 + AT_rich Low_complexity Low_complexity 1 23 0 1024 111 0 21 chr13 3479960 3480104 -98393065 - AluJb SINE Alu -171 141 1 642 153 18 9 chr13 3480111 3480222 -98392947 - L1PA16 LINE L1 -22 6144 6033 280 114 0 0 chr13 3480223 3480267 -98392902 - L1PA16 LINE L1 -183 5983 5940 1694 167 31 3 chr13 3480276 3480569 -98392600 - AluJo SINE Alu -11 301 1 366 277 121 14 chr13 3480639 3480780 -98392389 - MER109 Unknown Unknown -1627 805 650 2492 61 0 26 chr13 3481026 3481337 -98391832 - AluY SINE Alu -8 303 1 356 235 70 35 chr13 3481413 3481645 -98391524 - MER109 Unknown Unknown -1139 1293 2 2079 119 36 3 chr13 3481718 3482020 -98391149 - AluSx SINE Alu 0 312 1 1917 149 0 3 chr13 3482096 3482385 -98390784 - AluJb SINE Alu -24 288 1 347 263 50 0 chr13 3482389 3482469 -98390700 + L2 LINE L2 3185 3268 -4 274 274 63 11 chr13 3482498 3482593 -98390576 + HAL1b LINE L1 1193 1292 -56 723 162 6 22 chr13 3482712 3482878 -98390291 - MSTC LTR MaLR -215 150 4 887 254 44 20 chr13 3482880 3483128 -98390041 + L1MDa LINE L1 664 917 -5623 438 259 9 0 chr13 3483689 3483801 -98389368 + MLT2B1 LTR ERVL 1 113 -407 1109 209 45 29 chr13 3483926 3484366 -98388803 + MER74A LTR ERVL 1 545 -13 13878 118 47 8 chr13 3484706 3486505 -98386664 - Tigger1 DNA MER2_type -219 2199 303 204 40 0 0 chr13 3486505 3486530 -98386639 + (GA)n Simple_repeat Simple_repeat 2 26 0 13878 118 47 8 chr13 3486530 3486846 -98386323 - Tigger1 DNA MER2_type -2115 303 1 4426 142 25 0 chr13 3490876 3491566 -98381603 - L1MC1 LINE L1 -5 6328 5622 425 263 53 41 chr13 3491594 3491765 -98381404 + MER5B DNA MER1_type 4 176 -2 28 48 0 0 chr13 3491876 3491918 -98381251 + AT_rich Low_complexity Low_complexity 1 42 0 189 171 0 0 chr13 3491918 3491953 -98381216 + (TG)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr13 3491953 3491976 -98381193 + (GA)n Simple_repeat Simple_repeat 2 24 0 1635 149 0 59 chr13 3491976 3492120 -98381049 - AluJo SINE Alu -40 272 152 1995 102 0 39 chr13 3492120 3492403 -98380766 - AluSg SINE Alu -19 291 20 1635 149 0 59 chr13 3492403 3492547 -98380622 - AluJo SINE Alu -160 152 1 2276 81 0 3 chr13 3492960 3493284 -98379885 - AluSg SINE Alu 0 323 1 224 149 21 0 chr13 3493662 3493709 -98379460 + C-rich Low_complexity Low_complexity 1 48 0 639 221 63 31 chr13 3494517 3494739 -98378430 - L1ME LINE L1 -357 5764 5536 711 176 65 41 chr13 3495146 3495316 -98377853 + MLT1B LTR MaLR 4 177 -213 203 307 31 47 chr13 3495428 3495555 -98377614 - MIR3 SINE MIR -69 139 15 377 269 0 62 chr13 3495910 3496055 -98377114 + L2 LINE L2 3084 3219 -94 809 128 0 0 chr13 3496055 3496164 -98377005 - FLAM_A SINE Alu -12 130 22 285 322 58 0 chr13 3496164 3496251 -98376918 + L2 LINE L2 3214 3305 -8 2394 63 0 31 chr13 3497039 3497358 -98375811 - AluY SINE Alu -2 309 1 1865 136 27 30 chr13 3497548 3497849 -98375320 - AluSx SINE Alu -12 300 1 1591 117 4 17 chr13 3498563 3498794 -98374375 - AluSx SINE Alu -84 228 1 365 171 37 0 chr13 3498794 3498876 -98374293 - L1MB7 LINE L1 -276 5908 5824 23263 108 14 46 chr13 3498973 3502666 -98370503 - L1PA8A LINE L1 -441 5690 2156 1994 97 76 7 chr13 3502666 3502955 -98370214 - AluSc SINE Alu 0 309 1 23263 108 14 46 chr13 3502955 3503501 -98369668 - L1PA8A LINE L1 -3975 2156 1594 1869 182 118 58 chr13 3503514 3504031 -98369138 - LTR10A LTR ERV1 -61 548 1 878 157 57 0 chr13 3504219 3504378 -98368791 + FRAM SINE Alu 1 163 -13 2625 175 127 33 chr13 3504378 3504723 -98368446 + L1ME3 LINE L1 1079 1390 -5036 2520 68 0 0 chr13 3504723 3505018 -98368151 - AluY SINE Alu -16 295 1 2625 175 127 33 chr13 3505018 3505823 -98367346 + L1ME3 LINE L1 1390 2433 -3993 5607 41 2 2 chr13 3505843 3506481 -98366688 + L1PA3 LINE L1 5518 6155 0 2209 243 55 29 chr13 3506502 3507199 -98365970 + L1ME3 LINE L1 2514 3228 -3198 198 0 0 0 chr13 3507547 3507569 -98365600 + (TG)n Simple_repeat Simple_repeat 2 23 0 809 280 101 28 chr13 3507572 3508346 -98364823 + L1ME3 LINE L1 4908 5854 -588 2207 129 0 0 chr13 3508346 3508655 -98364514 + AluSx SINE Alu 1 309 -3 809 280 101 28 chr13 3508655 3508931 -98364238 + L1ME3 LINE L1 5854 6108 -334 2731 278 104 21 chr13 3508950 3509847 -98363322 + L1M4b LINE L1 20 990 -5869 1866 186 24 34 chr13 3509889 3510298 -98362871 + L1M4b LINE L1 1144 1548 -5311 2640 250 152 12 chr13 3511647 3512567 -98360602 - L2 LINE L2 -1064 2250 1202 17639 35 8 1 chr13 3512567 3514692 -98358477 - L1P2 LINE L1 -2074 4072 1932 11017 30 9 4 chr13 3514671 3516235 -98356934 + L1P2 LINE L1 4086 5654 -501 * 4969 168 43 12 chr13 3516339 3517321 -98355848 - L1 LINE L1 -1140 5006 3995 185 218 73 18 chr13 3518873 3518928 -98354241 + MIR SINE MIR 99 156 -106 2177 108 7 0 chr13 3519203 3519333 -98353836 + AluSx SINE Alu 1 129 -183 2198 104 0 7 chr13 3519333 3519641 -98353528 + AluSg SINE Alu 1 306 -4 2177 108 7 0 chr13 3519641 3519806 -98353363 + AluSx SINE Alu 129 298 -14 24 0 0 0 chr13 3520717 3520741 -98352428 + AT_rich Low_complexity Low_complexity 1 24 0 998 263 173 28 chr13 3521019 3521448 -98351721 - L2 LINE L2 -2 3311 2821 327 282 29 33 chr13 3521674 3521855 -98351314 - MIR SINE MIR -14 248 3 22 0 0 0 chr13 3523613 3523635 -98349534 + AT_rich Low_complexity Low_complexity 1 22 0 417 367 69 12 chr13 3523644 3523889 -98349280 - MIR SINE MIR -1 261 3 288 104 21 21 chr13 3524656 3524704 -98348465 - MIR3 SINE MIR -12 196 149 205 156 0 0 chr13 3524946 3524978 -98348191 + CT-rich Low_complexity Low_complexity 1 32 0 340 186 0 0 chr13 3525287 3525346 -98347823 + AluJo SINE Alu 78 136 -166 2296 89 0 3 chr13 3525370 3525672 -98347497 + AluY SINE Alu 1 301 -10 237 338 0 25 chr13 3525681 3525761 -98347408 - L2 LINE L2 -236 3036 2959 1678 134 100 1 chr13 3526142 3526730 -98346439 - LTR34 LTR ERV1 0 699 1 2400 70 3 0 chr13 3527227 3527526 -98345643 - AluY SINE Alu -11 300 1 21 0 0 0 chr13 3527683 3527704 -98345465 + AT_rich Low_complexity Low_complexity 1 21 0 2062 133 0 22 chr13 3529394 3529710 -98343459 + AluJb SINE Alu 1 309 -3 234 307 130 102 chr13 3531280 3531326 -98341843 + L2 LINE L2 2972 3015 -257 1513 164 18 94 chr13 3531326 3531479 -98341690 + AluJo SINE Alu 1 104 -208 2290 93 10 7 chr13 3531479 3531780 -98341389 + AluSg SINE Alu 1 302 -8 1513 164 18 94 chr13 3531780 3531975 -98341194 + AluJo SINE Alu 104 312 0 234 307 130 102 chr13 3531975 3532221 -98340948 + L2 LINE L2 3015 3272 0 1628 183 7 39 chr13 3532258 3532564 -98340605 + AluJb SINE Alu 1 296 -16 2304 101 0 3 chr13 3533298 3533596 -98339573 - AluSq SINE Alu -16 297 1 22 0 0 0 chr13 3533730 3533752 -98339417 + AT_rich Low_complexity Low_complexity 1 22 0 1721 103 0 0 chr13 3535147 3535361 -98337808 - AluSx SINE Alu -87 225 12 1608 160 106 47 chr13 3536528 3536935 -98336234 + LTR10A LTR ERV1 118 548 -61 718 204 91 17 chr13 3537054 3537230 -98335939 + AluJo SINE Alu 123 311 -1 2373 78 0 0 chr13 3538061 3538357 -98334812 + AluY SINE Alu 1 296 -15 301 295 0 0 chr13 3540282 3540360 -98332809 + L2 LINE L2 1480 1557 -1757 1518 224 3 13 chr13 3540360 3540663 -98332506 - AluJb SINE Alu -11 301 2 439 201 187 0 chr13 3541097 3541236 -98331933 + L1MC4 LINE L1 6945 7109 -933 774 218 73 28 chr13 3541247 3541495 -98331674 + L1MC4 LINE L1 7276 7534 -508 219 358 49 0 chr13 3541667 3541748 -98331421 - L2 LINE L2 0 3272 3188 7250 123 12 6 chr13 3541975 3543439 -98329730 + Harlequin LTR ERV1 3209 6623 -26 1679 191 104 52 chr13 3543467 3543986 -98329183 + LTR10A LTR ERV1 1 546 -63 260 169 46 0 chr13 3544000 3544065 -98329104 + L1P LINE L1 1594 1661 -4485 2346 104 0 0 chr13 3544680 3544979 -98328190 + AluSx SINE Alu 2 300 -12 1818 135 96 16 chr13 3545124 3545436 -98327733 + MER1B DNA MER1_type 1 337 0 252 218 0 36 chr13 3545915 3545970 -98327199 + L2 LINE L2 2588 2640 -674 947 175 67 127 chr13 3546016 3546387 -98326782 - Charlie4a DNA MER1_type -159 349 1 429 318 168 51 chr13 3546524 3546839 -98326330 + L2 LINE L2 2920 3271 -1 25 0 0 0 chr13 3546967 3546992 -98326177 + AT_rich Low_complexity Low_complexity 1 25 0 2353 56 0 0 chr13 3547056 3547341 -98325828 - AluY SINE Alu -26 285 1 2059 101 14 17 chr13 3548069 3548365 -98324804 + AluSg SINE Alu 1 295 -15 2505 49 3 0 chr13 3548486 3548793 -98324376 + AluY SINE Alu 1 308 -3 1821 60 80 90 chr13 3549215 3549516 -98323653 - AluSq SINE Alu -14 299 2 309 253 178 41 chr13 3550182 3550328 -98322841 + L1M2 LINE L1 1068 1233 -5616 431 250 64 57 chr13 3551481 3551621 -98321548 + MIR SINE MIR 25 167 -41 394 282 114 13 chr13 3551629 3551778 -98321391 + MIR SINE MIR 93 256 -6 346 289 132 0 chr13 3552222 3552343 -98320826 + L2 LINE L2 3136 3272 0 189 330 44 11 chr13 3554347 3554438 -98318731 - L2 LINE L2 -6 3307 3214 608 244 73 29 chr13 3554580 3554895 -98318274 - Charlie7 DNA MER1_type -158 2454 2126 285 203 61 95 chr13 3554963 3555086 -98318083 - L1MC5 LINE L1 -114 7847 7728 2039 150 0 0 chr13 3555086 3555108 -98318061 - AluSx SINE Alu -5 307 286 201 74 0 0 chr13 3555108 3555135 -98318034 + (TG)n Simple_repeat Simple_repeat 2 28 0 2039 150 0 0 chr13 3555135 3555419 -98317750 - AluSx SINE Alu -25 287 1 285 203 61 95 chr13 3555419 3555443 -98317726 - L1MC5 LINE L1 -233 7728 7705 388 268 92 83 chr13 3557027 3557225 -98315944 - L1M2 LINE L1 -5579 1270 1066 3062 114 234 5 chr13 3557225 3557785 -98315384 + LTR12 LTR ERV1 1 688 0 388 268 92 83 chr13 3557785 3557922 -98315247 - L1M2 LINE L1 -5783 1066 932 875 177 0 111 chr13 3558117 3558360 -98314809 - MER20 DNA MER1_type -3 216 1 462 290 0 8 chr13 3558362 3558486 -98314683 + L2 LINE L2 3191 3313 0 1081 245 148 41 chr13 3558589 3558964 -98314205 - Charlie7 DNA MER1_type -1789 823 363 2303 102 3 3 chr13 3558964 3559267 -98313902 + AluSq SINE Alu 1 303 -10 1081 245 148 41 chr13 3559267 3559471 -98313698 - Charlie7 DNA MER1_type -2249 363 182 2233 119 13 0 chr13 3559501 3559804 -98313365 - AluSq SINE Alu -6 307 1 219 25 75 0 chr13 3559817 3559857 -98313312 + (TA)n Simple_repeat Simple_repeat 2 44 0 554 235 20 32 chr13 3560017 3560215 -98312954 + MLT1J2 LTR MaLR 1 194 -215 324 105 0 79 chr13 3560337 3560413 -98312756 + MLT1J2 LTR MaLR 381 450 0 2160 119 0 7 chr13 3560911 3561221 -98311948 - AluSq SINE Alu -5 308 1 23 33 0 0 chr13 3564010 3564040 -98309129 + AT_rich Low_complexity Low_complexity 1 30 0 887 105 0 16 chr13 3564065 3564189 -98308980 + FLAM_C SINE Alu 11 132 -11 2481 62 0 10 chr13 3564324 3564631 -98308538 + AluY SINE Alu 1 304 -7 542 196 113 0 chr13 3564797 3564930 -98308239 - MSTB2 LTR MaLR -47 410 263 2224 88 0 17 chr13 3565085 3565379 -98307790 + AluSc SINE Alu 1 289 -20 421 336 29 14 chr13 3565579 3565719 -98307450 - L3 LINE CR1 -41 1536 1395 2380 52 0 14 chr13 3566135 3566466 -98306703 - AluY SINE Alu 0 327 1 267 273 189 23 chr13 3566476 3566608 -98306561 + L2 LINE L2 3159 3312 -1 391 220 88 0 chr13 3566806 3566897 -98306272 + L2 LINE L2 3215 3313 0 25 31 0 0 chr13 3566994 3567026 -98306143 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 3567148 3567169 -98306000 + AT_rich Low_complexity Low_complexity 1 21 0 2217 121 0 0 chr13 3567388 3567685 -98305484 + AluSx SINE Alu 1 297 -15 382 242 55 24 chr13 3568095 3568260 -98304909 - LTR41 LTR ERVL -5 768 599 546 245 77 0 chr13 3568793 3568936 -98304233 - LTR41 LTR ERVL -619 154 1 6721 74 5 1 chr13 3569121 3570198 -98302971 - L1PA8A LINE L1 -27 6104 5025 4953 56 27 21 chr13 3570548 3571178 -98301991 - L1PA5 LINE L1 -3 6151 5518 2679 174 139 36 chr13 3571198 3572004 -98301165 - L1MCa LINE L1 -3993 2964 1959 2530 68 0 0 chr13 3572004 3572300 -98300869 + AluY SINE Alu 1 296 -15 2679 174 139 36 chr13 3572300 3572387 -98300782 - L1MCa LINE L1 -4998 1959 1882 2301 131 8 6 chr13 3573209 3573561 -98299608 - L1MA5A LINE L1 -2 6295 5943 2197 63 39 7 chr13 3573563 3573848 -98299321 - AluSq SINE Alu -19 294 1 989 108 0 0 chr13 3573848 3573978 -98299191 - AluSq/x SINE Alu -182 130 1 3285 215 94 46 chr13 3574159 3575221 -98297948 + L1MCb LINE L1 82 1194 -4851 1054 151 44 0 chr13 3575251 3575410 -98297759 + FRAM SINE Alu 1 160 -16 1191 221 108 18 chr13 3575410 3575745 -98297424 + L1MCb LINE L1 1217 1581 -4983 386 254 135 24 chr13 3575955 3576081 -98297088 - L1MCa LINE L1 -6700 159 20 798 274 124 41 chr13 3576100 3576376 -98296793 - L1ME3A LINE L1 -342 5828 5576 2277 117 0 0 chr13 3576376 3576684 -98296485 - AluSx SINE Alu -4 308 1 798 274 124 41 chr13 3576684 3577158 -98296011 - L1ME3A LINE L1 -594 5576 5023 714 285 58 10 chr13 3577189 3577480 -98295689 - L1ME3A LINE L1 -1214 4932 4628 198 0 0 0 chr13 3577483 3577505 -98295664 + (CA)n Simple_repeat Simple_repeat 2 23 0 2222 242 54 29 chr13 3577854 3578552 -98294617 - L1ME3A LINE L1 -3197 2949 2234 4057 40 8 8 chr13 3578571 3579049 -98294120 - L1PA4 LINE L1 -1 6154 5677 348 259 152 25 chr13 3579436 3579633 -98293536 + MIR SINE MIR 20 241 -21 387 393 22 11 chr13 3579851 3580123 -98293046 + L3 LINE CR1 937 1211 -366 183 42 0 0 chr13 3580317 3580341 -98292828 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2260 101 3 3 chr13 3580420 3580718 -98292451 - AluSq SINE Alu -10 303 6 255 328 88 73 chr13 3580886 3581202 -98291967 + L2 LINE L2 2422 2747 -567 2620 149 23 44 chr13 3581202 3581684 -98291485 + L1MB3 LINE L1 5712 6183 0 255 328 88 73 chr13 3581684 3581763 -98291406 + L2 LINE L2 2747 2823 -491 770 268 104 9 chr13 3581866 3582097 -98291072 + MIR SINE MIR 1 253 -9 2438 54 7 0 chr13 3582129 3582425 -98290744 - AluY SINE Alu -13 298 1 303 349 34 20 chr13 3582584 3582733 -98290436 + L2 LINE L2 3122 3272 0 222 184 41 20 chr13 3582735 3582784 -98290385 + L3 LINE CR1 1488 1537 -40 408 20 0 0 chr13 3583717 3583766 -98289403 + (GA)n Simple_repeat Simple_repeat 2 50 0 298 303 40 0 chr13 3583878 3583977 -98289192 - MER5A DNA MER1_type -77 112 10 295 239 64 46 chr13 3586458 3586567 -98286602 - MIR3 SINE MIR -8 200 90 2309 88 0 20 chr13 3587234 3587540 -98285629 + AluSq SINE Alu 1 300 -13 2051 141 0 3 chr13 3588045 3588342 -98284827 - AluJo SINE Alu -16 296 1 21 36 0 0 chr13 3588410 3588438 -98284731 + AT_rich Low_complexity Low_complexity 1 28 0 6747 164 52 15 chr13 3588464 3588546 -98284623 - L1MA9 LINE L1 -70 6242 6164 306 0 0 0 chr13 3588546 3588580 -98284589 + (TG)n Simple_repeat Simple_repeat 1 34 0 6747 164 52 15 chr13 3588580 3590718 -98282451 - L1MA9 LINE L1 -148 6164 3943 2581 171 28 19 chr13 3590713 3591244 -98281925 + L1MA9 LINE L1 3394 3929 -2217 * 245 88 147 118 chr13 3592516 3592542 -98280627 - MER46A DNA MER2_type -2565 166 142 1390 211 0 31 chr13 3592542 3592831 -98280338 - L1MB7 LINE L1 -1 6183 5904 690 134 225 0 chr13 3592832 3592974 -98280195 + MER46B DNA MER2_type 1 49 -187 6012 115 12 35 chr13 3592977 3594052 -98279117 + L1PB3 LINE L1 5097 6152 -2 1203 142 5 0 chr13 3594259 3594449 -98278720 + MER46B DNA MER2_type 46 236 0 1276 197 4 12 chr13 3594457 3594706 -98278463 - L1MB7 LINE L1 -289 5895 5649 210 290 30 40 chr13 3594777 3594877 -98278292 + L2 LINE L2 2781 2879 -435 340 257 18 44 chr13 3595416 3595529 -98277640 + L2 LINE L2 3204 3313 0 272 299 30 0 chr13 3596158 3596222 -98276947 + MER58A DNA MER1_type 1 66 -41 822 243 131 25 chr13 3596222 3596579 -98276590 - MER57A LTR ERV1 -2 401 1 450 227 0 0 chr13 3596579 3596667 -98276502 + MER58A DNA MER1_type 61 148 0 227 233 0 0 chr13 3596667 3596710 -98276459 + MER58A DNA MER1_type 177 219 -5 2230 94 44 0 chr13 3598103 3598400 -98274769 - AluSg SINE Alu 0 310 1 1922 108 32 4 chr13 3598460 3598738 -98274431 + AluSc SINE Alu 1 286 -23 234 91 0 0 chr13 3599136 3599169 -98274000 + (A)n Simple_repeat Simple_repeat 1 33 0 230 285 258 43 chr13 3599419 3599675 -98273494 + L3b LINE CR1 1257 1567 -16 23 33 0 0 chr13 3599821 3599851 -98273318 + AT_rich Low_complexity Low_complexity 1 30 0 362 254 76 42 chr13 3600160 3600278 -98272891 - MER5A DNA MER1_type -51 138 17 1200 186 5 9 chr13 3600888 3601098 -98272071 - MER3 DNA MER1_type 0 209 1 1524 134 169 12 chr13 3601366 3601620 -98271549 + AluJb SINE Alu 1 294 -8 257 170 0 38 chr13 3602017 3602070 -98271099 - L2 LINE L2 0 3313 3263 940 208 73 38 chr13 3602318 3602635 -98270534 - MLT1C LTR MaLR 0 467 140 1330 149 38 4 chr13 3602635 3602921 -98270248 + L1PA16 LINE L1 5858 6162 -1 625 180 25 87 chr13 3602947 3603108 -98270061 - MLT1C LTR MaLR -316 151 1 319 259 99 71 chr13 3603881 3604093 -98269076 - L2 LINE L2 -2 3311 3094 221 290 167 41 chr13 3604400 3604645 -98268524 - L2 LINE L2 -674 2640 2365 2016 124 0 7 chr13 3604713 3605003 -98268166 - AluSx SINE Alu -24 288 1 2346 70 0 3 chr13 3605190 3605517 -98267652 + AluY SINE Alu 1 326 0 435 329 29 14 chr13 3605933 3606073 -98267096 + L3 LINE CR1 1395 1536 -41 2218 92 0 17 chr13 3606273 3606567 -98266602 - AluSc SINE Alu -20 289 1 601 196 113 0 chr13 3606722 3606855 -98266314 + MSTB2 LTR MaLR 263 410 -47 2499 62 0 10 chr13 3607021 3607328 -98265841 - AluY SINE Alu -7 304 1 886 105 0 16 chr13 3607463 3607587 -98265582 - FLAM_C SINE Alu -11 132 11 23 33 0 0 chr13 3607612 3607642 -98265527 + AT_rich Low_complexity Low_complexity 1 30 0 2281 107 0 7 chr13 3608473 3608783 -98264386 - AluSx SINE Alu 0 312 5 2531 63 0 0 chr13 3609213 3609516 -98263653 - AluY SINE Alu -8 303 1 2384 45 21 7 chr13 3609720 3610009 -98263160 - AluY SINE Alu -18 293 1 228 285 168 0 chr13 3610502 3610639 -98262530 - HAL1 LINE L1 -2319 188 29 1016 197 16 0 chr13 3611369 3611552 -98261617 + MER5A DNA MER1_type 3 188 -1 434 266 129 60 chr13 3611581 3612246 -98260923 - L1MEd LINE L1 -2964 3165 2455 333 345 114 8 chr13 3612256 3612502 -98260667 - L1MEd LINE L1 -3969 2341 2070 1707 184 74 18 chr13 3612638 3612964 -98260205 + MER2 DNA MER2_type 1 344 0 786 255 82 85 chr13 3613191 3614241 -98258928 - L1MEd LINE L1 -4480 1649 609 288 339 114 40 chr13 3614452 3614830 -98258339 - MLT1J2 LTR MaLR -44 406 1 263 253 27 13 chr13 3614865 3614940 -98258229 - L1MEd LINE L1 -6031 88 13 192 250 0 0 chr13 3614947 3614987 -98258182 - MER5B DNA MER1_type -135 43 4 2353 70 3 35 chr13 3615212 3615525 -98257644 + AluY SINE Alu 1 303 -8 32 43 0 0 chr13 3616178 3616224 -98256945 + AT_rich Low_complexity Low_complexity 1 46 0 2412 84 0 0 chr13 3616348 3616644 -98256525 - AluSq SINE Alu -17 296 1 2044 93 0 15 chr13 3617139 3617407 -98255762 - AluSx SINE Alu -43 269 6 295 273 201 26 chr13 3617564 3617718 -98255451 - MIR3 SINE MIR -7 201 21 259 330 21 11 chr13 3618641 3618735 -98254434 - MIR SINE MIR -119 143 49 443 233 92 0 chr13 3618795 3618915 -98254254 + LTR33A LTR ERVL 61 191 -332 319 196 345 0 chr13 3618973 3619121 -98254048 + LTR33A LTR ERVL 318 516 -7 239 308 68 30 chr13 3619419 3619552 -98253617 - MER5B DNA MER1_type -40 138 1 723 199 58 0 chr13 3619560 3619731 -98253438 + MER5A DNA MER1_type 1 181 -8 246 321 60 22 chr13 3619952 3620086 -98253083 - L2 LINE L2 0 3313 3175 295 268 70 108 chr13 3622839 3622996 -98250173 + MER96 DNA MER1_type? 25 175 0 225 0 0 0 chr13 3623161 3623186 -98249983 + (TG)n Simple_repeat Simple_repeat 2 26 0 2089 147 0 6 chr13 3623197 3623511 -98249658 - AluSx SINE Alu 0 312 1 209 325 13 0 chr13 3625687 3625764 -98247405 - L2 LINE L2 -11 3302 3225 291 325 124 20 chr13 3625807 3626056 -98247113 + L3b LINE CR1 1123 1397 -186 1871 214 116 9 chr13 3626158 3626617 -98246552 - MLT2B2 LTR ERVL -7 508 1 2250 115 0 3 chr13 3626622 3626918 -98246251 - AluSx SINE Alu -17 295 1 268 330 41 0 chr13 3627489 3627586 -98245583 + L2 LINE L2 3159 3259 -13 289 326 46 17 chr13 3627795 3627970 -98245199 + L1MC/D LINE L1 5694 5873 -1935 203 254 34 0 chr13 3628190 3628249 -98244920 + (TA)n Simple_repeat Simple_repeat 2 62 0 203 239 0 34 chr13 3628303 3628391 -98244778 + (TAAA)n Simple_repeat Simple_repeat 2 86 0 285 275 225 14 chr13 3628786 3628928 -98244241 + MER5B DNA MER1_type 6 177 -1 224 293 11 98 chr13 3629015 3629189 -98243980 + MER5A DNA MER1_type 1 159 -30 2522 63 48 40 chr13 3629593 3629972 -98243197 - L1PA5 LINE L1 -3 6151 5770 187 405 32 16 chr13 3630884 3631010 -98242159 + L3 LINE CR1 3 130 -1447 557 154 8 85 chr13 3631173 3631303 -98241866 + MLT2B1 LTR ERVL 399 518 -2 2550 61 0 0 chr13 3631596 3631893 -98241276 + AluY SINE Alu 1 297 -14 833 96 0 4 chr13 3632156 3632367 -98240802 - AluY SINE Alu -8 303 2 279 59 0 0 chr13 3632482 3632516 -98240653 - MLT2C2 LTR ERVL -335 129 96 762 211 96 46 chr13 3632540 3632758 -98240411 + MLT2C1 LTR ERVL 121 349 -48 189 213 0 0 chr13 3632780 3632827 -98240342 + C-rich Low_complexity Low_complexity 1 47 0 357 117 0 0 chr13 3633109 3633169 -98240000 + (TA)n Simple_repeat Simple_repeat 1 60 0 204 232 21 11 chr13 3633262 3633357 -98239812 + (TA)n Simple_repeat Simple_repeat 2 97 0 248 296 88 25 chr13 3633398 3633557 -98239612 - L1ME4a LINE L1 -71 6050 5882 2028 97 0 0 chr13 3633666 3633933 -98239236 + AluSq SINE Alu 44 310 -3 312 320 16 0 chr13 3633942 3634067 -98239102 - MIR SINE MIR -15 247 121 2576 55 0 3 chr13 3634176 3634484 -98238685 - AluY SINE Alu -4 307 1 2452 45 3 7 chr13 3635961 3636253 -98236916 + AluY SINE Alu 1 291 -20 1152 276 100 51 chr13 3637288 3638345 -98234824 + L1MCc LINE L1 1168 2484 -4638 2510 127 11 3 chr13 3638727 3639088 -98234081 - THE1B LTR MaLR 0 364 1 372 349 60 5 chr13 3639607 3639822 -98233347 + L2 LINE L2 2745 2971 -343 521 172 0 11 chr13 3639832 3639925 -98233244 - Tigger7 DNA MER2_type -6 2581 2490 * 1538 183 4 8 chr13 3639922 3640185 -98232984 - Tigger7 DNA MER2_type -2224 263 2 418 271 205 5 chr13 3640203 3640413 -98232756 + L2 LINE L2 2989 3240 -73 336 330 154 0 chr13 3640470 3640796 -98232373 - L2 LINE L2 -150 3163 2794 838 294 144 17 chr13 3640867 3641513 -98231656 - L2 LINE L2 -671 2643 1916 478 288 94 21 chr13 3641748 3641981 -98231188 + MIR SINE MIR 13 262 0 1487 289 29 25 chr13 3642733 3643346 -98229823 - L1MC4a LINE L1 -1883 5925 5310 761 118 17 0 chr13 3643317 3643436 -98229733 - L1MCa LINE L1 -4801 1625 1505 * 1383 174 190 45 chr13 3643436 3643810 -98229359 - MSTB2 LTR MaLR -7 450 23 5841 240 133 13 chr13 3643823 3645371 -98227798 - MSTD-int LTR MaLR 0 1735 2 1295 234 46 38 chr13 3645373 3645766 -98227403 - MSTD LTR MaLR 0 396 1 4615 201 34 100 chr13 3645801 3647367 -98225802 - L1MCa LINE L1 -4938 1488 26 180 125 0 0 chr13 3647442 3647474 -98225695 + (CA)n Simple_repeat Simple_repeat 1 32 0 1771 143 4 8 chr13 3647484 3647743 -98225426 - AluJo SINE Alu -49 263 6 2161 79 61 0 chr13 3647750 3648028 -98225141 - AluY SINE Alu -16 295 1 399 309 82 30 chr13 3648163 3648785 -98224384 - L1MC4a LINE L1 -1006 5420 4767 2225 100 3 7 chr13 3648823 3649141 -98224028 + AluSx SINE Alu 1 312 0 937 121 0 0 chr13 3649164 3649296 -98223873 + FLAM_C SINE Alu 1 132 -1 206 111 56 0 chr13 3649363 3649399 -98223770 + CT-rich Low_complexity Low_complexity 3 40 0 617 268 42 0 chr13 3649623 3649813 -98223356 + MIR SINE MIR 60 257 -5 378 0 0 0 chr13 3652107 3652149 -98221020 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr13 3652150 3652179 -98220990 + GC_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 3652241 3652279 -98220890 + GC_rich Low_complexity Low_complexity 1 38 0 231 36 0 0 chr13 3652782 3652810 -98220359 + (TG)n Simple_repeat Simple_repeat 1 28 0 189 132 0 0 chr13 3654537 3654575 -98218594 + (TC)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr13 3656091 3656114 -98217055 + GC_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 3656748 3656800 -98216369 + GC_rich Low_complexity Low_complexity 1 52 0 206 220 17 0 chr13 3659531 3659590 -98213579 + CT-rich Low_complexity Low_complexity 1 60 0 309 317 7 113 chr13 3660117 3660401 -98212768 + L2 LINE L2 3014 3267 -5 365 237 31 0 chr13 3660618 3660715 -98212454 + MIR SINE MIR 93 192 -70 2322 69 0 60 chr13 3661897 3662216 -98210953 + AluY SINE Alu 4 303 -8 345 137 0 0 chr13 3662712 3662763 -98210406 - MLT1A1 LTR MaLR -58 307 257 203 171 158 53 chr13 3663953 3664029 -98209140 - L2 LINE L2 -12 3301 3218 256 257 9 106 chr13 3664045 3664158 -98209011 + L2 LINE L2 3171 3272 0 1649 148 18 25 chr13 3664238 3664515 -98208654 - AluJo SINE Alu -2 310 36 210 171 0 0 chr13 3664707 3664742 -98208427 + (TA)n Simple_repeat Simple_repeat 2 36 0 323 158 53 53 chr13 3665064 3665140 -98208029 - Charlie7 DNA MER1_type 0 2612 2537 23 0 0 0 chr13 3665175 3665198 -98207971 + AT_rich Low_complexity Low_complexity 1 23 0 182 255 59 0 chr13 3666032 3666083 -98207086 - L3b LINE CR1 -50 1533 1480 186 314 14 0 chr13 3666918 3666988 -98206181 + MIR3 SINE MIR 116 186 -22 1652 135 108 0 chr13 3668306 3668566 -98204603 - AluSx SINE Alu -24 288 1 288 262 58 29 chr13 3669115 3669218 -98203951 - MIR SINE MIR -80 128 23 208 333 71 0 chr13 3670726 3670825 -98202344 - MIR SINE MIR -112 150 45 334 294 64 18 chr13 3671550 3671659 -98201510 + L2 LINE L2 3159 3272 0 260 356 7 0 chr13 3672405 3672554 -98200615 + (CA)n Simple_repeat Simple_repeat 1 150 0 * 339 301 28 17 chr13 3672528 3672704 -98200465 + (CTCA)n Simple_repeat Simple_repeat 3 180 0 193 215 31 92 chr13 3672742 3672807 -98200362 - L2 LINE L2 -10 3303 3243 2689 215 107 5 chr13 3672807 3673398 -98199771 - MER82 DNA MER2_type -2 651 1 182 211 35 0 chr13 3674477 3674534 -98198635 + CT-rich Low_complexity Low_complexity 2 60 0 224 316 118 21 chr13 3674703 3674890 -98198279 + MIR SINE MIR 23 227 -35 403 268 28 16 chr13 3676293 3676418 -98196751 - MIR3 SINE MIR -8 200 71 444 37 0 0 chr13 3677300 3677354 -98195815 + (TG)n Simple_repeat Simple_repeat 1 54 0 1735 164 40 3 chr13 3679385 3679684 -98193485 - AluJb SINE Alu -2 310 1 2575 30 0 7 chr13 3680046 3680345 -98192824 - AluY SINE Alu -14 297 1 215 351 26 18 chr13 3680489 3680603 -98192566 + MIR3 SINE MIR 88 202 -6 287 333 48 24 chr13 3680662 3680830 -98192339 - MIR SINE MIR -70 192 21 306 0 0 0 chr13 3682253 3682287 -98190882 + (TG)n Simple_repeat Simple_repeat 2 35 0 442 261 72 67 chr13 3682579 3682759 -98190410 + MER5A DNA MER1_type 8 188 -1 1302 64 0 0 chr13 3683256 3683412 -98189757 - L1PA10 LINE L1 -4 6164 6009 390 42 0 0 chr13 3683938 3683986 -98189183 + (TG)n Simple_repeat Simple_repeat 2 49 0 202 0 59 29 chr13 3684223 3684257 -98188912 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 35 41 0 0 chr13 3684292 3684341 -98188828 + AT_rich Low_complexity Low_complexity 1 49 0 35 0 0 0 chr13 3687745 3687780 -98185389 + AT_rich Low_complexity Low_complexity 1 35 0 2373 80 0 13 chr13 3687781 3688083 -98185086 + AluY SINE Alu 1 298 -13 207 0 0 0 chr13 3689255 3689278 -98183891 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1662 195 0 3 chr13 3689278 3689560 -98183609 - AluSx SINE Alu -27 285 5 276 236 90 11 chr13 3689699 3689788 -98183381 - L2 LINE L2 -1 3312 3217 207 0 0 0 chr13 3691435 3691458 -98181711 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4038 244 74 68 chr13 3692245 3692692 -98180477 + L1ME1 LINE L1 422 865 -5531 2691 118 66 20 chr13 3692692 3693099 -98180070 - MSTB LTR MaLR 0 426 1 4038 244 74 68 chr13 3693099 3693760 -98179409 + L1ME1 LINE L1 865 1520 -4876 1772 68 0 5 chr13 3693760 3693981 -98179188 - AluY SINE Alu -6 305 86 4038 244 74 68 chr13 3693981 3694150 -98179019 + L1ME1 LINE L1 1520 1686 -4710 2429 75 0 0 chr13 3694150 3694442 -98178727 + AluY SINE Alu 1 292 -19 4038 244 74 68 chr13 3694442 3694828 -98178341 + L1ME1 LINE L1 1686 2098 -4298 2466 230 31 8 chr13 3694831 3695467 -98177702 + L1ME1 LINE L1 2179 2829 -3386 1919 50 0 0 chr13 3695453 3695692 -98177477 - L1P LINE L1 -848 5298 5060 * 2758 75 0 0 chr13 3695692 3696025 -98177144 + L1PA5 LINE L1 5820 6154 0 642 247 110 0 chr13 3696025 3696252 -98176917 + L1ME1 LINE L1 2806 3057 -3158 229 211 19 0 chr13 3696246 3696298 -98176871 + L1ME1 LINE L1 3762 3814 -2401 * 2190 123 3 0 chr13 3696328 3696630 -98176539 + AluSx SINE Alu 5 307 -5 2550 231 58 33 chr13 3696630 3697409 -98175760 + L1ME1 LINE L1 4053 4850 -1365 * 3066 208 86 28 chr13 3697400 3698300 -98174869 + L1ME1 LINE L1 5293 6399 -4 33 0 0 0 chr13 3699333 3699366 -98173803 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 3699525 3699554 -98173615 + AT_rich Low_complexity Low_complexity 1 29 0 660 287 121 18 chr13 3699677 3699900 -98173269 + MIR SINE MIR 13 258 -4 1529 119 80 88 chr13 3700775 3701055 -98172114 + L1MA8 LINE L1 5943 6221 -70 2282 113 0 0 chr13 3701055 3701357 -98171812 - AluSx SINE Alu -10 302 1 1529 119 80 88 chr13 3701357 3701428 -98171741 + L1MA8 LINE L1 6221 6291 0 472 320 75 23 chr13 3702510 3702816 -98170353 + L2 LINE L2 2253 2574 -740 892 225 67 0 chr13 3702926 3703135 -98170034 - MER46C DNA MER2_type -24 314 92 3351 149 9 11 chr13 3704625 3705194 -98167975 - L1MA9 LINE L1 0 6312 5745 338 385 8 0 chr13 3705473 3705595 -98167574 - L2 LINE L2 -9 3263 3141 2369 95 0 7 chr13 3705677 3705982 -98167187 + AluSq SINE Alu 1 303 -10 183 42 0 0 chr13 3706061 3706085 -98167084 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 387 393 22 11 chr13 3706279 3706551 -98166618 - L3 LINE CR1 -366 1211 937 348 259 152 25 chr13 3706769 3706966 -98166203 - MIR SINE MIR -21 241 20 1199 119 0 6 chr13 3708092 3708416 -98164753 + (CCA)n Simple_repeat Simple_repeat 1 503 0 579 269 12 29 chr13 3708417 3708588 -98164581 - MIR SINE MIR -9 253 86 30 0 0 0 chr13 3710174 3710204 -98162965 + AT_rich Low_complexity Low_complexity 1 30 0 507 209 29 64 chr13 3710509 3710681 -98162488 - MER104 DNA Tc2 0 180 15 206 224 20 0 chr13 3710747 3710796 -98162373 + (CCCTAA)n Simple_repeat Simple_repeat 4 53 0 229 405 41 15 chr13 3710796 3711063 -98162106 + L2 LINE L2 2463 2736 -578 1484 162 62 4 chr13 3711191 3711450 -98161719 - AluJo SINE Alu -38 274 1 1326 166 28 5 chr13 3711825 3712042 -98161127 + MER58A DNA MER1_type 1 222 -2 192 158 0 0 chr13 3713503 3713541 -98159628 + GA-rich Low_complexity Low_complexity 6 43 0 858 286 81 25 chr13 3713774 3713954 -98159215 - MLT1J LTR MaLR 0 511 343 2483 199 88 27 chr13 3713954 3714476 -98158693 + MLT2B3 LTR ERVL 1 554 0 858 286 81 25 chr13 3714476 3714750 -98158419 - MLT1J LTR MaLR -168 343 6 478 166 101 157 chr13 3715373 3715590 -98157579 + MER102a DNA MER1_type 126 330 0 354 348 90 32 chr13 3715593 3715993 -98157176 - L2 LINE L2 -1039 2275 1853 367 287 22 37 chr13 3716214 3716350 -98156819 - MIR SINE MIR -70 192 59 189 210 113 0 chr13 3716798 3716860 -98156309 + L2 LINE L2 3245 3313 0 711 299 0 15 chr13 3716974 3717178 -98155991 - MIR SINE MIR 0 262 62 2321 91 0 3 chr13 3717479 3717777 -98155392 - AluSx SINE Alu -15 297 1 328 271 133 13 chr13 3719287 3719438 -98153731 + MER5A DNA MER1_type 21 189 0 229 275 116 0 chr13 3719647 3719716 -98153453 - MIR SINE MIR -75 187 111 2225 111 10 0 chr13 3719838 3720136 -98153033 - AluSq SINE Alu -12 301 1 345 242 0 0 chr13 3720434 3720500 -98152669 + MER63 DNA MER1_type 681 746 -314 594 237 200 0 chr13 3722960 3723150 -98150019 - MIR SINE MIR -3 259 32 1867 211 40 11 chr13 3723632 3724078 -98149091 + MLT1C LTR MaLR 1 459 -8 260 262 262 0 chr13 3724087 3724190 -98148979 - MER5A DNA MER1_type -39 150 21 346 339 127 27 chr13 3724754 3725046 -98148123 + L2 LINE L2 2944 3264 -8 1222 49 0 27 chr13 3725594 3725778 -98147391 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1092 289 50 56 chr13 3725778 3726455 -98146714 + L2 LINE L2 2655 3313 0 219 296 57 0 chr13 3726613 3726701 -98146468 - L2 LINE L2 0 3272 3180 375 347 95 46 chr13 3727116 3727914 -98145255 + L2 LINE L2 2220 3058 -214 2121 249 64 40 chr13 3728038 3729021 -98144148 - L1MEc LINE L1 -4494 1784 817 243 0 0 0 chr13 3729023 3729050 -98144119 + (TA)n Simple_repeat Simple_repeat 1 27 0 2612 147 12 7 chr13 3729050 3729473 -98143696 - L1MB2 LINE L1 -62 6109 5685 2070 260 92 54 chr13 3729474 3730236 -98142933 - L1MEc LINE L1 -5571 825 35 1770 155 17 28 chr13 3730964 3731255 -98141914 - AluJo SINE Alu -24 288 1 373 317 81 8 chr13 3731402 3731525 -98141644 + MIR3 SINE MIR 3 134 -74 570 274 88 34 chr13 3731551 3731755 -98141414 - MIR SINE MIR 0 262 48 669 230 131 80 chr13 3731942 3732429 -98140740 - L1MEd LINE L1 -4927 1192 681 1244 145 114 86 chr13 3732789 3733079 -98140090 - AluJb SINE Alu -14 298 1 498 283 66 0 chr13 3733087 3733253 -98139916 - L1MEd LINE L1 -5939 180 4 326 314 97 0 chr13 3733254 3733378 -98139791 - MIR SINE MIR -61 201 66 27 39 0 19 chr13 3734227 3734244 -98138925 + AT_rich Low_complexity Low_complexity 1 17 -34 1542 110 103 8 chr13 3734244 3734507 -98138662 + L1MA3 LINE L1 6018 6305 0 27 39 0 19 chr13 3734507 3734541 -98138628 + AT_rich Low_complexity Low_complexity 17 51 0 23 33 0 0 chr13 3735110 3735140 -98138029 + AT_rich Low_complexity Low_complexity 1 30 0 758 266 31 5 chr13 3735140 3735332 -98137837 - MIR SINE MIR -51 211 15 283 250 145 57 chr13 3736920 3737044 -98136125 + MIR3 SINE MIR 21 155 -53 5518 148 21 8 chr13 3737434 3738325 -98134844 + MER4D LTR ERV1 1 903 0 2504 183 63 51 chr13 3738804 3739329 -98133840 + LTR26B LTR ERV1 1 531 0 183 42 0 0 chr13 3739561 3739585 -98133584 + (GGCTG)n Simple_repeat Simple_repeat 4 27 0 219 227 0 0 chr13 3740081 3740125 -98133044 + GA-rich Low_complexity Low_complexity 2 45 0 1845 161 63 9 chr13 3741151 3741561 -98131608 - MER31A LTR ERV1 -19 447 14 337 310 155 41 chr13 3743169 3743901 -98129268 + L2 LINE L2 2234 3052 -220 258 268 45 18 chr13 3743956 3744068 -98129101 + MER65A LTR ERV1 1 115 -330 500 210 10 0 chr13 3744519 3744619 -98128550 + L2 LINE L2 3172 3272 0 192 200 0 78 chr13 3745566 3745629 -98127540 + L2 LINE L2 3207 3303 -10 2115 55 82 34 chr13 3745858 3746033 -98127136 - AluYa5 SINE Alu -4 307 111 2562 50 7 0 chr13 3746033 3746336 -98126833 - AluY SINE Alu -6 305 1 2115 55 82 34 chr13 3746336 3746453 -98126716 - AluYa5 SINE Alu -200 111 1 22 0 0 0 chr13 3747436 3747458 -98125711 + AT_rich Low_complexity Low_complexity 1 22 0 3489 211 91 82 chr13 3747504 3748759 -98124410 + L1MC4 LINE L1 6759 8028 -14 1839 207 39 0 chr13 3748759 3749093 -98124076 - MER7A DNA MER2_type -1 345 1 3489 211 91 82 chr13 3749093 3749109 -98124060 + L1MC4 LINE L1 8028 8042 0 526 236 32 74 chr13 3751045 3751261 -98121908 - HAL1 LINE L1 -1 2506 2300 897 211 17 28 chr13 3751456 3751636 -98121533 - MER45A DNA AcHobo 0 178 1 1421 286 136 32 chr13 3751789 3752666 -98120503 - HAL1 LINE L1 -343 2164 1197 307 155 32 0 chr13 3752672 3752747 -98120422 - Alu SINE Alu -3 299 239 329 305 168 31 chr13 3752779 3752973 -98120196 - HAL1 LINE L1 -1364 1143 977 216 97 0 0 chr13 3752973 3753004 -98120165 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 329 305 168 31 chr13 3753004 3753232 -98119937 - HAL1 LINE L1 -1530 977 663 193 234 0 0 chr13 3754663 3754710 -98118459 - MIR SINE MIR -111 151 105 2568 50 0 0 chr13 3754872 3755174 -98117995 + AluY SINE Alu 1 302 -9 322 401 28 19 chr13 3755281 3755493 -98117676 + L2 LINE L2 3032 3245 -27 2141 129 16 0 chr13 3755562 3755865 -98117304 - AluSx SINE Alu -4 308 1 2124 143 9 109 chr13 3757206 3757391 -98115778 + MLT2C1 LTR ERVL 1 118 -279 1501 172 16 67 chr13 3757391 3757705 -98115464 - AluJo SINE Alu -14 298 1 2124 143 9 109 chr13 3757705 3757960 -98115209 + MLT2C1 LTR ERVL 118 397 0 2359 69 3 0 chr13 3758571 3758859 -98114310 - AluSc SINE Alu -20 289 1 370 282 48 0 chr13 3759624 3759727 -98113442 + MIR SINE MIR 46 153 -109 2268 117 0 3 chr13 3760562 3760870 -98112299 + AluSx SINE Alu 5 311 -1 499 159 24 127 chr13 3760952 3761078 -98112091 + Tigger1 DNA MER2_type 6 118 -2300 255 31 0 0 chr13 3761078 3761110 -98112059 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1615 64 0 15 chr13 3761110 3761313 -98111856 - AluY SINE Alu -111 200 1 1097 71 0 0 chr13 3761324 3761465 -98111704 - AluY SINE Alu -1 310 170 15227 122 19 9 chr13 3761465 3763761 -98109408 + Tigger1 DNA MER2_type 101 2418 0 350 94 0 0 chr13 3764168 3764221 -98108948 - L1MA9 LINE L1 -255 6057 6005 235 316 103 32 chr13 3765494 3765649 -98107520 - MIR SINE MIR -16 246 81 209 214 24 48 chr13 3766024 3766108 -98107061 + A-rich Low_complexity Low_complexity 4 85 0 711 51 24 55 chr13 3768313 3768570 -98104599 + (TCTA)n Simple_repeat Simple_repeat 1 248 0 568 305 79 49 chr13 3769215 3769812 -98103357 - L1ME2 LINE L1 -293 5871 5257 184 353 0 0 chr13 3769926 3769994 -98103175 + MIR SINE MIR 48 115 -147 338 31 51 51 chr13 3770218 3770316 -98102853 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 2252 101 7 0 chr13 3770755 3771051 -98102118 - AluSc SINE Alu -11 298 1 2506 98 3 35 chr13 3771405 3771466 -98101703 - THE1A LTR MaLR 0 355 294 2430 54 3 7 chr13 3771466 3771764 -98101405 - AluY SINE Alu -14 297 1 2506 98 3 35 chr13 3771764 3772069 -98101100 - THE1A LTR MaLR -61 294 1 834 181 0 0 chr13 3772633 3772771 -98100398 + FLAM_C SINE Alu 1 138 -5 1565 174 15 58 chr13 3772775 3773103 -98100066 + 7SLRNA srpRNA srpRNA 2 315 -5 2715 48 0 0 chr13 3773434 3773744 -98099425 + AluY SINE Alu 1 310 -1 2526 54 3 16 chr13 3774412 3774727 -98098442 - AluY SINE Alu 0 311 1 186 314 54 50 chr13 3775054 3775293 -98097876 + L2 LINE L2 2602 2841 -473 213 39 0 0 chr13 3775654 3775680 -98097489 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 331 78 78 0 chr13 3775915 3775966 -98097203 - MLT2A1 LTR ERVL 0 453 399 361 144 61 0 chr13 3775974 3776106 -98097063 + (TA)n Simple_repeat Simple_repeat 2 141 0 3145 51 23 5 chr13 3776108 3776501 -98096668 - MLT2A1 LTR ERVL -44 400 1 396 224 197 67 chr13 3776501 3776622 -98096547 + MARNA DNA Mariner 188 291 -295 2103 142 0 0 chr13 3776622 3776925 -98096244 - AluJb SINE Alu -9 303 1 396 224 197 67 chr13 3776925 3777049 -98096120 + MARNA DNA Mariner 291 466 -120 580 300 12 33 chr13 3777961 3778204 -98094965 + MIR SINE MIR 18 255 -7 393 298 39 44 chr13 3780020 3780201 -98092968 - MIR SINE MIR -70 192 13 746 171 0 8 chr13 3780320 3780449 -98092720 + FLAM_C SINE Alu 1 128 -5 1187 197 79 48 chr13 3780464 3780754 -98092415 + AluJo SINE Alu 2 300 -2 21 57 0 0 chr13 3780972 3781007 -98092162 + AT_rich Low_complexity Low_complexity 1 35 0 377 51 25 38 chr13 3781111 3781190 -98091979 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 209 214 24 48 chr13 3783394 3783478 -98089691 + T-rich Low_complexity Low_complexity 4 85 0 194 316 103 32 chr13 3783853 3784008 -98089161 + MIR SINE MIR 81 246 -16 2043 66 0 0 chr13 3784765 3785006 -98088163 - AluY SINE Alu -70 241 1 530 166 0 151 chr13 3785299 3785438 -98087731 - MLT2D LTR ERVL -2 412 295 187 405 32 16 chr13 3785594 3785720 -98087449 - L3 LINE CR1 -1447 130 3 2540 61 48 40 chr13 3786632 3787011 -98086158 + L1PA5 LINE L1 5770 6151 -3 224 293 11 98 chr13 3787415 3787589 -98085580 - MER5A DNA MER1_type -30 159 1 285 275 225 14 chr13 3787676 3787818 -98085351 - MER5B DNA MER1_type -1 177 6 203 239 0 34 chr13 3788213 3788301 -98084868 + (TTTA)n Simple_repeat Simple_repeat 2 86 0 203 254 34 0 chr13 3788355 3788414 -98084755 + (TA)n Simple_repeat Simple_repeat 1 61 0 289 326 46 17 chr13 3788634 3788809 -98084360 - L1MC/D LINE L1 -1935 5873 5694 268 330 41 0 chr13 3789018 3789115 -98084054 - L2 LINE L2 -13 3259 3159 1765 40 0 5 chr13 3789386 3789588 -98083581 - AluY SINE Alu -108 203 3 691 0 45 0 chr13 3790217 3790306 -98082863 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 1891 153 0 0 chr13 3790316 3790590 -98082579 - AluSx SINE Alu -38 274 1 219 139 0 0 chr13 3791062 3791098 -98082071 + (TC)n Simple_repeat Simple_repeat 2 37 0 201 133 0 67 chr13 3791344 3791389 -98081780 + (TCTCTG)n Simple_repeat Simple_repeat 4 45 0 357 281 59 51 chr13 3792409 3792628 -98080541 - MIR SINE MIR -33 229 11 1087 33 0 8 chr13 3794955 3795077 -98078092 + AluY SINE Alu 15 135 -176 1922 53 137 0 chr13 3795077 3795340 -98077829 + AluY SINE Alu 2 300 -1 23 0 0 0 chr13 3795340 3795363 -98077806 + AT_rich Low_complexity Low_complexity 1 23 0 601 304 29 21 chr13 3795687 3795930 -98077239 - MIR SINE MIR -1 261 17 21 71 0 0 chr13 3796241 3796283 -98076886 + AT_rich Low_complexity Low_complexity 1 42 0 2241 95 0 26 chr13 3796283 3796587 -98076582 - AluSq SINE Alu -17 296 1 3722 89 8 6 chr13 3796950 3797476 -98075693 - L1PB1 LINE L1 -7 6144 5618 1050 187 72 59 chr13 3797627 3797839 -98075330 + L1MA9 LINE L1 5946 6179 -121 324 0 0 0 chr13 3797839 3797875 -98075294 + (CA)n Simple_repeat Simple_repeat 1 36 0 1050 187 72 59 chr13 3797875 3797999 -98075170 + L1MA9 LINE L1 6179 6300 0 2071 141 0 3 chr13 3798079 3798376 -98074793 + AluJo SINE Alu 1 296 -16 2293 91 0 23 chr13 3798881 3799188 -98073981 - AluSq SINE Alu -13 300 1 261 239 64 46 chr13 3799855 3799964 -98073205 + MIR3 SINE MIR 90 200 -8 191 296 70 43 chr13 3800171 3800286 -98072883 - L2 LINE L2 -896 2418 2301 273 316 20 0 chr13 3802445 3802543 -98070626 + MER5A DNA MER1_type 10 109 -80 408 20 0 0 chr13 3802656 3802705 -98070464 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 184 41 20 chr13 3803638 3803687 -98069482 - L3 LINE CR1 -40 1537 1488 259 349 34 20 chr13 3803689 3803838 -98069331 - L2 LINE L2 0 3272 3122 2464 54 7 0 chr13 3803997 3804293 -98068876 + AluY SINE Alu 1 298 -13 702 275 96 9 chr13 3804327 3804556 -98068613 - MIR SINE MIR -13 249 1 2497 149 23 44 chr13 3804738 3805220 -98067949 - L1MB3 LINE L1 0 6183 5712 202 369 45 5 chr13 3805314 3805536 -98067633 - L2 LINE L2 -662 2652 2422 1996 127 0 10 chr13 3805704 3805995 -98067174 + AluSq SINE Alu 6 293 -20 2135 88 37 7 chr13 3806009 3806305 -98066864 + AluY SINE Alu 1 305 -6 2717 181 81 41 chr13 3806737 3807834 -98065335 + pTR5 LTR ERV1 11 581 -133 234 273 0 15 chr13 3808502 3808568 -98064601 - L1MC5 LINE L1 -48 7913 7849 1328 194 113 40 chr13 3808852 3809198 -98063971 - MLT1A2 LTR MaLR 0 374 4 496 284 68 4 chr13 3809203 3809477 -98063692 - L1MC4 LINE L1 -387 7655 7260 370 239 138 0 chr13 3809582 3809720 -98063449 - L1ME4a LINE L1 0 6121 5965 324 247 0 12 chr13 3810171 3810256 -98062913 + MER5A DNA MER1_type 26 109 -80 464 311 45 0 chr13 3810510 3810687 -98062482 + MIR SINE MIR 78 262 0 4738 158 35 22 chr13 3812872 3813762 -98059407 - L1MB3 LINE L1 0 6183 5283 549 313 77 56 chr13 3816140 3816530 -98056639 + L2 LINE L2 2910 3307 -6 4059 125 88 45 chr13 3816879 3817632 -98055537 + LTR1 LTR ERV1 1 785 0 463 340 184 26 chr13 3817909 3818666 -98054503 - L3 LINE CR1 -665 912 37 4042 112 65 6 chr13 3819376 3820010 -98053159 - L1PA16 LINE L1 -1 6165 5495 22 35 0 0 chr13 3820353 3820382 -98052787 + AT_rich Low_complexity Low_complexity 1 29 0 1649 108 48 4 chr13 3820685 3820953 -98052216 + L1PB4 LINE L1 5333 5612 -544 3423 118 13 104 chr13 3820953 3821035 -98052134 - LTR12 LTR ERV1 -134 580 492 2013 110 18 0 chr13 3821035 3821316 -98051853 - AluY SINE Alu -10 301 16 3423 118 13 104 chr13 3821316 3821870 -98051299 - LTR12 LTR ERV1 -222 492 2 3042 152 42 0 chr13 3821870 3822398 -98050771 + L1PB4 LINE L1 5607 6156 0 281 281 0 0 chr13 3823457 3823521 -98049648 + MER97b DNA MER1_type? 981 1044 -9 2448 80 3 0 chr13 3824855 3825155 -98048014 - AluY SINE Alu -10 301 1 226 250 238 0 chr13 3825155 3825239 -98047930 + MIR3 SINE MIR 102 205 -3 242 268 18 0 chr13 3825322 3825378 -98047791 + L2 LINE L2 3123 3179 -93 1109 158 5 0 chr13 3825436 3825626 -98047543 - L1MA5 LINE L1 0 6300 6110 192 240 60 0 chr13 3827603 3827653 -98045516 + MIR SINE MIR 83 135 -73 201 238 0 0 chr13 3827860 3827902 -98045267 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 3828414 3828435 -98044734 + AT_rich Low_complexity Low_complexity 1 21 0 2193 162 11 25 chr13 3831083 3831514 -98041655 + L1MA5 LINE L1 5621 6050 -250 998 117 8 144 chr13 3831493 3831750 -98041419 + L1MB8 LINE L1 5904 6125 -53 * 34 0 0 0 chr13 3831750 3831784 -98041385 + AT_rich Low_complexity Low_complexity 1 34 0 2395 50 3 23 chr13 3832024 3832326 -98040843 + AluY SINE Alu 1 296 -15 2356 74 3 16 chr13 3832754 3833066 -98040103 - AluY SINE Alu -3 308 1 2507 77 0 0 chr13 3833460 3833770 -98039399 - AluY SINE Alu -1 310 1 1581 177 27 17 chr13 3834058 3834357 -98038812 - AluJo SINE Alu -10 302 1 2498 57 0 16 chr13 3834357 3834672 -98038497 - AluY SINE Alu -1 310 1 616 120 23 45 chr13 3834678 3834811 -98038358 - L1MB8 LINE L1 0 6178 6049 2968 144 5 49 chr13 3834986 3835556 -98037613 - L1MA10 LINE L1 0 6334 5790 2571 217 113 31 chr13 3835575 3836325 -98036844 + MER21B LTR ERV1 12 823 -40 284 269 13 0 chr13 3836396 3836474 -98036695 - L1MA10 LINE L1 -385 5783 5705 2438 66 0 3 chr13 3836562 3836866 -98036303 - AluY SINE Alu -6 305 3 509 236 32 74 chr13 3839038 3839254 -98033915 - HAL1 LINE L1 -1 2506 2300 825 211 17 28 chr13 3839449 3839629 -98033540 - MER45A DNA AcHobo 0 178 1 1359 284 136 32 chr13 3839782 3840659 -98032510 - HAL1 LINE L1 -343 2164 1197 306 155 32 0 chr13 3840665 3840740 -98032429 - Alu SINE Alu -3 299 239 297 305 168 31 chr13 3840772 3840966 -98032203 - HAL1 LINE L1 -1364 1143 977 216 97 0 0 chr13 3840966 3840997 -98032172 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 297 305 168 31 chr13 3840997 3841225 -98031944 - HAL1 LINE L1 -1530 977 663 2265 94 0 7 chr13 3842865 3843162 -98030007 + AluY SINE Alu 1 295 -16 220 305 150 55 chr13 3843326 3843526 -98029643 - L2 LINE L2 -833 2481 2263 419 35 18 0 chr13 3843671 3843728 -98029441 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 191 358 90 8 chr13 3843943 3844077 -98029092 - MIR SINE MIR -70 192 48 27 49 0 0 chr13 3845299 3845340 -98027829 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr13 3845539 3845561 -98027608 + AT_rich Low_complexity Low_complexity 1 22 0 1746 177 27 7 chr13 3845563 3845862 -98027307 - AluJb SINE Alu -7 305 1 275 356 9 0 chr13 3846714 3846829 -98026340 - MIR SINE MIR -112 150 35 270 181 57 48 chr13 3846918 3847023 -98026146 - MER113 DNA MER1_type? -301 220 115 186 342 49 53 chr13 3847600 3847904 -98025265 - L2 LINE L2 -6 3307 3005 2255 112 3 3 chr13 3848216 3848528 -98024641 - AluSx SINE Alu 0 312 1 23 0 0 0 chr13 3849529 3849552 -98023617 + GC_rich Low_complexity Low_complexity 1 23 0 181 250 42 0 chr13 3850752 3850800 -98022369 - MIR3 SINE MIR -6 202 153 266 360 18 0 chr13 3850909 3851023 -98022146 - MIR SINE MIR -124 138 23 419 35 18 0 chr13 3852092 3852149 -98021020 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 220 305 150 55 chr13 3852294 3852494 -98020675 + L2 LINE L2 2263 2481 -833 1910 145 3 0 chr13 3852658 3852948 -98020221 - AluSx SINE Alu -16 296 6 222 292 100 17 chr13 3853106 3853226 -98019943 + MIR SINE MIR 67 196 -66 2162 123 0 0 chr13 3853339 3853631 -98019538 - AluSx SINE Alu -20 292 1 2294 134 3 0 chr13 3854427 3854770 -98018399 - L1PA16 LINE L1 -9 6157 5814 786 144 0 0 chr13 3854913 3855038 -98018131 - L1PA16 LINE L1 -558 5608 5484 219 304 14 108 chr13 3855095 3855156 -98018013 - L2 LINE L2 0 3272 3207 2167 81 33 0 chr13 3855156 3855428 -98017741 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr13 3855430 3855459 -98017710 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 219 304 14 108 chr13 3855459 3855542 -98017627 - L2 LINE L2 -66 3206 3139 466 228 53 53 chr13 3855893 3856082 -98017087 - L2 LINE L2 0 3313 3125 1148 249 150 3 chr13 3857034 3857465 -98015704 + MER110A LTR ERV1 3 477 0 2016 153 35 3 chr13 3857573 3857990 -98015179 + L1MC2 LINE L1 5185 5614 -719 462 170 203 17 chr13 3857990 3858115 -98015054 + MLT1A1 LTR MaLR 1 161 -213 6715 94 8 9 chr13 3858121 3858398 -98014771 + L1PA10 LINE L1 4686 4962 -1206 2268 86 0 30 chr13 3858398 3858702 -98014467 + AluY SINE Alu 1 295 -16 6715 94 8 9 chr13 3858702 3859880 -98013289 + L1PA10 LINE L1 4962 6136 -32 714 141 70 8 chr13 3860088 3860216 -98012953 + MLT1A1 LTR MaLR 226 361 -4 3577 169 37 23 chr13 3860221 3860921 -98012248 + L1MC2 LINE L1 5626 6335 -9 276 30 0 0 chr13 3863029 3863062 -98010107 + (TG)n Simple_repeat Simple_repeat 2 34 0 2002 148 3 3 chr13 3863177 3863475 -98009694 + AluJb SINE Alu 1 298 -14 312 252 72 65 chr13 3863683 3863868 -98009301 + LTR48B LTR ERV1 337 634 -10 308 231 141 16 chr13 3865296 3865417 -98007752 - MIR SINE MIR -16 246 111 621 260 39 0 chr13 3865657 3865838 -98007331 + MER20 DNA MER1_type 31 218 -1 2107 104 10 7 chr13 3866156 3866445 -98006724 + AluSg1 SINE Alu 1 290 -19 237 291 88 34 chr13 3866604 3866752 -98006417 + L2 LINE L2 2895 3050 -263 220 288 0 0 chr13 3866777 3866836 -98006333 + L2 LINE L2 3183 3241 -72 404 126 42 36 chr13 3866887 3867054 -98006115 + (TG)n Simple_repeat Simple_repeat 2 169 0 300 120 53 27 chr13 3867159 3867309 -98005860 + (TG)n Simple_repeat Simple_repeat 1 154 0 245 167 52 31 chr13 3867330 3867426 -98005743 + (TG)n Simple_repeat Simple_repeat 1 98 0 4151 128 79 19 chr13 3868777 3869518 -98003651 + LTR1 LTR ERV1 16 785 0 190 256 0 0 chr13 3871040 3871079 -98002090 - L3 LINE CR1 -6 1571 1533 1020 204 50 11 chr13 3871336 3871596 -98001573 + MER33 DNA MER1_type 17 286 -38 189 121 0 0 chr13 3872520 3872553 -98000616 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 2250 122 0 0 chr13 3873462 3873765 -97999404 + AluSx SINE Alu 1 303 -9 327 49 0 0 chr13 3875757 3875798 -97997371 + (TG)n Simple_repeat Simple_repeat 1 41 0 362 57 19 0 chr13 3875914 3875967 -97997202 + (TG)n Simple_repeat Simple_repeat 1 54 0 2055 177 64 3 chr13 3876450 3876847 -97996322 + MSTB LTR MaLR 1 356 -8 28 0 0 0 chr13 3877278 3877306 -97995863 + AT_rich Low_complexity Low_complexity 1 28 0 1174 225 62 34 chr13 3878252 3878608 -97994561 - MLT1A2 LTR MaLR -8 366 1 955 164 0 7 chr13 3878876 3879028 -97994141 - AluJb SINE Alu -20 292 142 230 222 16 16 chr13 3879199 3879262 -97993907 + (CATA)n Simple_repeat Simple_repeat 4 66 0 473 226 6 17 chr13 3879264 3879445 -97993724 + (CA)n Simple_repeat Simple_repeat 2 180 0 239 284 0 6 chr13 3879472 3879634 -97993535 + (CA)n Simple_repeat Simple_repeat 2 162 0 252 284 11 21 chr13 3879640 3879735 -97993434 + (CATA)n Simple_repeat Simple_repeat 3 96 0 271 261 15 0 chr13 3879743 3879877 -97993292 + (CA)n Simple_repeat Simple_repeat 1 136 0 2314 72 0 39 chr13 3881627 3881934 -97991235 + AluY SINE Alu 1 295 -16 1334 110 94 0 chr13 3882427 3882618 -97990551 - AluSx SINE Alu -99 213 5 23 54 0 0 chr13 3884934 3884971 -97988198 + AT_rich Low_complexity Low_complexity 1 37 0 302 333 69 10 chr13 3885406 3885508 -97987661 - HAL1 LINE L1 -1040 1467 1360 291 238 38 12 chr13 3885515 3885595 -97987574 + MER5A DNA MER1_type 102 183 -6 435 228 203 19 chr13 3885685 3885843 -97987326 + MER5A DNA MER1_type 1 187 -2 519 269 167 6 chr13 3885857 3886013 -97987156 - MER5A DNA MER1_type -5 184 4 181 289 0 0 chr13 3886225 3886270 -97986899 + L2 LINE L2 3269 3313 0 7294 33 0 5 chr13 3889646 3890504 -97982665 + L1PA4 LINE L1 5301 6154 -1 337 356 46 8 chr13 3891942 3892006 -97981163 + L2 LINE L2 2815 2875 -397 2510 138 74 2 chr13 3892006 3892426 -97980743 - LTR47A LTR ERVL 0 452 3 337 356 46 8 chr13 3892426 3892600 -97980569 + L2 LINE L2 2875 3062 -210 272 280 63 74 chr13 3893084 3893259 -97979910 - MLT1I LTR MaLR -2 407 235 4114 155 93 22 chr13 3893605 3894101 -97979068 - MER6 DNA MER2_type 0 865 289 192 77 0 0 chr13 3894101 3894127 -97979042 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 4114 155 93 22 chr13 3894127 3894436 -97978733 - MER6 DNA MER2_type -576 289 3 265 310 100 0 chr13 3895040 3895140 -97978029 - L2 LINE L2 -40 3273 3164 204 273 156 13 chr13 3895339 3895416 -97977753 + L2 LINE L2 3185 3272 0 644 100 8 0 chr13 3895605 3895725 -97977444 + (TG)n Simple_repeat Simple_repeat 2 122 0 1824 166 0 16 chr13 3897310 3897617 -97975552 + AluJb SINE Alu 1 302 -10 381 381 40 6 chr13 3898186 3898359 -97974810 - MER5A DNA MER1_type -10 179 1 2287 112 3 3 chr13 3899997 3900309 -97972860 + AluSx SINE Alu 1 312 0 283 338 49 56 chr13 3900621 3900926 -97972243 + L2 LINE L2 3005 3307 -6 320 356 9 0 chr13 3901697 3901812 -97971357 + MIR SINE MIR 35 150 -112 1787 181 26 7 chr13 3902664 3902968 -97970201 + AluJb SINE Alu 1 310 -2 27 49 0 0 chr13 3903186 3903227 -97969942 + AT_rich Low_complexity Low_complexity 1 41 0 265 314 83 58 chr13 3903760 3904076 -97969093 - L2 LINE L2 -218 3054 2716 248 335 149 16 chr13 3904446 3904634 -97968535 + MIR SINE MIR 44 256 -6 419 35 18 0 chr13 3904798 3904855 -97968314 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 272 305 150 55 chr13 3905000 3905200 -97967969 + L2 LINE L2 2263 2481 -833 2402 85 0 0 chr13 3905363 3905658 -97967511 - AluY SINE Alu -16 295 1 1033 263 83 97 chr13 3906223 3906924 -97966245 + MER21B LTR ERV1 24 714 -149 216 327 0 0 chr13 3907401 3907453 -97965716 - L3 LINE CR1 -7 1570 1519 192 216 0 0 chr13 3907464 3907501 -97965668 + L2 LINE L2 3276 3312 -1 180 246 40 103 chr13 3907499 3907625 -97965544 - MIR SINE MIR -73 135 18 * 194 348 29 0 chr13 3908714 3908783 -97964386 + MIR SINE MIR 79 149 -113 5645 123 229 81 chr13 3908820 3910297 -97962872 - pTR5 LTR ERV1 0 2438 743 499 268 0 0 chr13 3911527 3911639 -97961530 - MIR SINE MIR -88 174 63 259 284 16 94 chr13 3911863 3911990 -97961179 - MLT1L LTR MaLR -248 367 251 679 152 0 9 chr13 3912503 3912608 -97960561 - AluSg/x SINE Alu -13 299 196 287 342 36 9 chr13 3912610 3912738 -97960431 - MIR SINE MIR -62 146 18 220 194 0 0 chr13 3913829 3913865 -97959304 + polypurine Low_complexity Low_complexity 4 39 0 339 292 93 6 chr13 3914149 3914310 -97958859 + MER91A DNA MER1_type 19 193 -3 225 335 300 0 chr13 3914547 3914717 -97958452 + MIR SINE MIR 9 229 -33 2157 161 106 3 chr13 3915905 3916291 -97956878 - MSTB LTR MaLR 0 426 1 1446 190 52 78 chr13 3916458 3916858 -97956311 + MLT1B LTR MaLR 1 390 0 1666 106 136 4 chr13 3917505 3917770 -97955399 + AluY SINE Alu 1 300 -1 703 291 36 47 chr13 3918116 3918381 -97954788 - MIR SINE MIR -1 261 5 21 71 0 0 chr13 3918670 3918712 -97954457 + AT_rich Low_complexity Low_complexity 1 42 0 2242 96 0 26 chr13 3918697 3919016 -97954153 - AluSq SINE Alu -2 311 5 2617 105 3 6 chr13 3919379 3919742 -97953427 - L1PB1 LINE L1 -7 6860 6499 498 126 0 27 chr13 3919743 3919854 -97953315 + (TA)n Simple_repeat Simple_repeat 1 108 0 317 100 117 0 chr13 3919854 3919914 -97953255 - L1PB1 LINE L1 -360 6507 6441 44853 39 2 6 chr13 3919917 3926096 -97947073 - L1PA3 LINE L1 0 6155 1 15686 167 35 11 chr13 3926096 3931312 -97941857 - L1PB1 LINE L1 -412 6455 1102 1545 141 114 15 chr13 3931340 3931603 -97941566 - AluJo SINE Alu -23 289 1 237 234 135 50 chr13 3931610 3931751 -97941418 - L1ME LINE L1 -392 5761 5609 2255 99 0 3 chr13 3931772 3932066 -97941103 - AluY SINE Alu -16 295 3 351 273 146 19 chr13 3932372 3932687 -97940482 - L1ME LINE L1 -805 5324 4970 428 256 45 23 chr13 3932938 3933114 -97940055 - L1ME LINE L1 -4980 1139 960 207 162 48 9 chr13 3933119 3933224 -97939945 + (TA)n Simple_repeat Simple_repeat 1 109 0 818 178 0 0 chr13 3933240 3933375 -97939794 - FRAM SINE Alu -5 171 37 819 298 111 46 chr13 3933872 3934583 -97938586 - L1ME LINE L1 -5328 791 35 2226 108 3 6 chr13 3935144 3935458 -97937711 + AluSp SINE Alu 1 313 0 214 344 0 0 chr13 3935575 3935636 -97937533 - L2 LINE L2 -26 3287 3227 201 171 0 0 chr13 3936395 3936430 -97936739 + A-rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 3938163 3938185 -97934984 + AT_rich Low_complexity Low_complexity 1 22 0 580 196 0 105 chr13 3938891 3939044 -97934125 - Charlie1 DNA MER1_type -2 2759 2623 * 757 236 107 9 chr13 3939031 3939247 -97933922 - Charlie1 DNA MER1_type -2522 239 3 275 366 53 0 chr13 3939329 3939460 -97933709 + MIR SINE MIR 8 145 -117 1652 159 0 0 chr13 3940696 3940947 -97932222 - AluSx SINE Alu -31 281 31 1571 191 31 72 chr13 3940948 3941353 -97931816 - LTR12 LTR ERV1 -234 1800 100 266 198 59 79 chr13 3941354 3941455 -97931714 - AluS SINE Alu -227 75 1 1450 133 7 81 chr13 3941463 3941734 -97931435 - AluJo SINE Alu -24 288 38 273 281 70 35 chr13 3941759 3941873 -97931296 + MIR SINE MIR 30 147 -115 222 363 22 0 chr13 3942096 3942187 -97930982 - MIR SINE MIR -93 115 23 * 950 245 4 13 chr13 3942184 3942417 -97930752 + MIR SINE MIR 32 262 0 363 269 11 0 chr13 3945907 3946000 -97927169 + MIR SINE MIR 120 213 -49 459 0 0 0 chr13 3946407 3946458 -97926711 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 183 42 0 0 chr13 3946458 3946482 -97926687 + (TC)n Simple_repeat Simple_repeat 1 24 0 2296 82 14 0 chr13 3946482 3946775 -97926394 - AluY SINE Alu -14 297 1 246 119 24 0 chr13 3947116 3947158 -97926011 - L2 LINE L2 0 3313 3271 284 0 28 0 chr13 3948522 3948558 -97924611 + (TG)n Simple_repeat Simple_repeat 2 38 0 294 291 150 9 chr13 3949726 3949870 -97923299 + MIR SINE MIR 13 162 -67 706 285 214 17 chr13 3950177 3951035 -97922134 - L2 LINE L2 -5 3308 2271 369 0 0 0 chr13 3952402 3952443 -97920726 + (CA)n Simple_repeat Simple_repeat 1 41 0 420 55 0 0 chr13 3952628 3952683 -97920486 + (TG)n Simple_repeat Simple_repeat 2 56 0 185 356 52 9 chr13 3954970 3955085 -97918084 + L2 LINE L2 3153 3272 0 282 224 48 79 chr13 3956774 3956863 -97916306 + L1ME4a LINE L1 5959 6042 -79 2443 83 0 3 chr13 3956863 3957175 -97915994 - AluY SINE Alu 0 311 1 282 224 48 79 chr13 3957175 3957250 -97915919 + L1ME4a LINE L1 6042 6118 -3 226 221 156 13 chr13 3957517 3957594 -97915575 - HsTC2 DNA Tc2 -1809 89 2 698 313 24 12 chr13 3957635 3957884 -97915285 + L1M4 LINE L1 3614 3865 -2281 1044 246 98 20 chr13 3958402 3958842 -97914327 + L1M4 LINE L1 3997 4470 -1676 10185 160 42 15 chr13 3958842 3960651 -97912518 + Tigger4(Zombi) DNA MER2_type 1 1858 -873 328 181 193 0 chr13 3961719 3961802 -97911367 - MER5A DNA MER1_type -77 112 14 325 98 0 0 chr13 3962993 3963044 -97910125 + L1MA3 LINE L1 6124 6174 -131 272 313 0 0 chr13 3963867 3963934 -97909235 + polypyrimidine Low_complexity Low_complexity 3 69 0 2291 257 69 35 chr13 3964085 3964953 -97908216 - L1ME1 LINE L1 -15 6220 5323 520 240 76 20 chr13 3964964 3965214 -97907955 - L1ME1 LINE L1 -1229 4986 4723 547 272 86 50 chr13 3966408 3966827 -97906342 - L1ME1 LINE L1 -1907 4308 3875 717 300 69 23 chr13 3966848 3967371 -97905798 - L1ME1 LINE L1 -3248 2967 2421 2367 96 0 0 chr13 3967495 3967797 -97905372 - AluSg SINE Alu -8 302 1 289 213 124 41 chr13 3967797 3967966 -97905203 - L1ME1 LINE L1 -4099 2297 2115 367 137 27 0 chr13 3968130 3968203 -97904966 + GA-rich Low_complexity Low_complexity 2 76 0 376 282 143 32 chr13 3968239 3968428 -97904741 - L1ME1 LINE L1 -4595 1801 1584 2156 97 6 59 chr13 3968428 3968749 -97904420 - AluSq SINE Alu -9 304 1 376 282 143 32 chr13 3968749 3968775 -97904394 - L1ME1 LINE L1 -4812 1584 1562 1295 174 98 98 chr13 3968818 3969279 -97903890 + LTR1 LTR ERV1 1 461 -324 980 119 26 7 chr13 3969282 3969433 -97903736 + LTR1 LTR ERV1 632 785 0 272 273 120 24 chr13 3969501 3969710 -97903459 - L1ME1 LINE L1 -4897 1499 1271 616 271 42 47 chr13 3970267 3970459 -97902710 + MER58D DNA MER1_type 2 192 -194 331 281 0 22 chr13 3970459 3970548 -97902621 + MLT1D LTR MaLR 1 87 -539 987 236 65 11 chr13 3970596 3970859 -97902310 + MLT1C LTR MaLR 1 277 -190 676 160 9 0 chr13 3971014 3971120 -97902049 - MLT1D LTR MaLR -398 107 1 693 169 30 60 chr13 3971121 3971303 -97901866 + MLT1C LTR MaLR 304 463 -4 1180 227 15 91 chr13 3971329 3971734 -97901435 + MLT1D LTR MaLR 132 505 0 846 180 52 21 chr13 3971734 3971927 -97901242 + MER58D DNA MER1_type 188 386 0 2106 186 10 18 chr13 3975313 3975712 -97897457 + MSTD LTR MaLR 1 396 0 443 277 0 27 chr13 3976083 3976267 -97896902 + (TG)n Simple_repeat Simple_repeat 2 180 0 386 309 0 0 chr13 3976299 3976467 -97896702 + (TG)n Simple_repeat Simple_repeat 2 169 0 357 286 17 11 chr13 3976543 3976721 -97896448 + (TG)n Simple_repeat Simple_repeat 1 179 0 239 0 32 0 chr13 3978407 3978438 -97894731 + (CA)n Simple_repeat Simple_repeat 1 32 0 190 318 112 0 chr13 3979852 3979959 -97893210 - L2 LINE L2 0 3272 3154 243 284 99 0 chr13 3980775 3980856 -97892313 - L2 LINE L2 -15 3298 3210 210 118 0 0 chr13 3981192 3981226 -97891943 + (A)n Simple_repeat Simple_repeat 1 34 0 1804 141 106 62 chr13 3981345 3981635 -97891534 - LTR47A LTR ERVL 0 452 135 2126 113 10 7 chr13 3981635 3981944 -97891225 - AluSq SINE Alu -3 310 1 1804 141 106 62 chr13 3981944 3982086 -97891083 - LTR47A LTR ERVL -317 135 1 1949 149 52 19 chr13 3983343 3983706 -97889463 - THE1C LTR MaLR 0 375 1 435 98 0 49 chr13 3983706 3983788 -97889381 - THE1C-int LTR MaLR 0 1580 1503 9063 122 68 9 chr13 3983934 3985320 -97887849 - THE1C-int LTR MaLR -112 1468 1 1863 122 70 57 chr13 3985320 3985690 -97887479 - THE1C LTR MaLR 0 375 1 2300 66 11 0 chr13 3988835 3989159 -97884010 - AluYb8 SINE Alu 0 327 1 2194 123 0 13 chr13 3989806 3990116 -97883053 - AluSx SINE Alu -6 306 1 1701 113 52 8 chr13 3990757 3991031 -97882138 - AluSx SINE Alu 0 312 38 229 368 26 0 chr13 3991783 3991897 -97881272 + MIR SINE MIR 32 148 -114 269 140 18 0 chr13 3992061 3992118 -97881051 + CT-rich Low_complexity Low_complexity 1 58 0 1907 129 14 10 chr13 3992118 3992413 -97880756 - AluSx SINE Alu -4 308 13 183 42 0 0 chr13 3992413 3992437 -97880732 + (GCCTG)n Simple_repeat Simple_repeat 1 24 0 2382 98 0 0 chr13 3992442 3992739 -97880430 - AluSx SINE Alu -11 301 5 186 118 0 0 chr13 3994241 3994275 -97878894 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 68 0 0 chr13 3995303 3995347 -97877822 - AluSp/q SINE Alu -36 267 224 1668 128 15 11 chr13 3996867 3997132 -97876037 - Tigger2 DNA MER2_type -10 2708 2443 4549 142 16 19 chr13 3997199 3997947 -97875222 - Tigger2 DNA MER2_type -1972 746 1 213 139 0 0 chr13 3998725 3998768 -97874401 + (TC)n Simple_repeat Simple_repeat 2 44 0 318 111 0 0 chr13 3999619 3999664 -97873505 - L1MA5 LINE L1 -412 5888 5844 2950 260 143 40 chr13 3999664 4001330 -97871839 - L1M4 LINE L1 -768 5378 3540 847 250 14 111 chr13 4001338 4001682 -97871487 + MLT1D-int LTR MaLR 1055 1365 -6 730 176 38 109 chr13 4001691 4001929 -97871240 + MLT1D LTR MaLR 1 221 -284 287 326 45 7 chr13 4001952 4002218 -97870951 + L2 LINE L2 2933 3272 0 202 274 32 0 chr13 4002951 4003013 -97870156 - L2 LINE L2 0 3272 3209 2469 65 13 3 chr13 4003338 4003645 -97869524 - AluY SINE Alu -1 310 1 2191 91 0 60 chr13 4003948 4004267 -97868902 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 4004267 4004292 -97868877 + AT_rich Low_complexity Low_complexity 1 25 0 3077 127 52 2 chr13 4004292 4004787 -97868382 - L1MA3 LINE L1 0 6305 5786 713 93 0 9 chr13 4004887 4004995 -97868174 + L1PA8 LINE L1 6066 6172 0 1985 118 75 31 chr13 4006030 4006379 -97866790 - THE1B LTR MaLR 0 364 1 11518 105 6 1 chr13 4006379 4007952 -97865217 - THE1B-int LTR MaLR 0 1580 1 1586 147 28 28 chr13 4007952 4008237 -97864932 - THE1B LTR MaLR 0 364 80 449 119 81 0 chr13 4008368 4008528 -97864641 + (TA)n Simple_repeat Simple_repeat 1 173 0 474 180 19 1 chr13 4008528 4008632 -97864537 + Tigger4(Zombi) DNA MER2_type 228 2731 0 501 244 12 47 chr13 4008633 4008805 -97864364 + L1ME2 LINE L1 4470 4635 -1511 25 83 0 0 chr13 4008818 4008878 -97864291 + AT_rich Low_complexity Low_complexity 1 60 0 1333 262 33 5 chr13 4008904 4009331 -97863838 + L1ME2 LINE L1 4615 5053 -1093 1258 196 4 43 chr13 4009331 4009612 -97863557 + AluSg SINE Alu 39 308 -2 3182 249 51 8 chr13 4009613 4010682 -97862487 + L1ME2 LINE L1 5031 6153 -11 336 312 109 10 chr13 4010877 4011079 -97862090 + MIR SINE MIR 35 256 -6 199 296 45 61 chr13 4011117 4011249 -97861920 + L2 LINE L2 2932 3061 -211 1511 101 0 10 chr13 4011297 4011506 -97861663 - AluY SINE Alu -10 301 95 342 339 8 0 chr13 4061665 4061792 -97811377 - L2 LINE L2 -708 2606 2479 4061 154 112 96 chr13 4062338 4062632 -97810537 - L1MC3 LINE L1 -7 7778 7490 2070 87 0 4 chr13 4062632 4062909 -97810260 - AluY SINE Alu -15 296 21 4061 154 112 96 chr13 4062909 4063193 -97809976 - L1MC3 LINE L1 -295 7490 7212 347 256 0 0 chr13 4063193 4063275 -97809894 - MLT1F1 LTR MaLR -450 117 36 4061 154 112 96 chr13 4063275 4063672 -97809497 - L1MC3 LINE L1 -573 7212 6704 198 319 104 39 chr13 4063825 4064085 -97809084 + L2 LINE L2 2322 2598 -716 966 300 61 34 chr13 4064545 4064685 -97808484 - L2 LINE L2 -4 3309 3174 1042 181 229 3 chr13 4064685 4064977 -97808192 + MER46B DNA MER2_type 4 236 0 966 300 61 34 chr13 4064977 4065246 -97807923 - L2 LINE L2 -139 3174 2889 688 295 182 12 chr13 4065249 4065568 -97807601 - L2 LINE L2 -973 2341 1969 751 313 40 4 chr13 4065595 4065822 -97807347 - MIR SINE MIR -22 240 6 585 316 73 25 chr13 4065817 4066216 -97806953 - L2 LINE L2 -1332 1982 1565 * 192 307 40 0 chr13 4068395 4068470 -97804699 - MIR3 SINE MIR -24 184 107 591 270 93 31 chr13 4068868 4069096 -97804073 - MIR SINE MIR -10 252 14 258 287 0 0 chr13 4070083 4070226 -97802943 + (TA)n Simple_repeat Simple_repeat 1 143 0 2839 154 19 4 chr13 4072395 4072870 -97800299 - L1PB4 LINE L1 0 6156 5675 1176 171 0 33 chr13 4072871 4073082 -97800087 - AluJo SINE Alu -8 304 101 1838 160 6 25 chr13 4073235 4073553 -97799616 + AluJb SINE Alu 1 312 0 2198 120 13 0 chr13 4074900 4075200 -97797969 + AluSc SINE Alu 1 304 -5 2606 193 38 13 chr13 4078839 4079369 -97793800 - MER44D DNA MER2_type 0 605 8 201 311 194 0 chr13 4079399 4079502 -97793667 - MIR SINE MIR -74 188 66 240 282 0 14 chr13 4080267 4080338 -97792831 - MIR SINE MIR -66 142 73 244 241 0 0 chr13 4080371 4080429 -97792740 + T-rich Low_complexity Low_complexity 1 58 0 208 342 49 60 chr13 4081941 4082371 -97790798 - L2 LINE L2 -6 3266 2842 207 273 75 62 chr13 4083753 4083914 -97789255 + MIR SINE MIR 50 212 -50 437 302 47 31 chr13 4084109 4084367 -97788802 + L3 LINE CR1 1315 1576 -1 269 331 50 14 chr13 4084525 4084664 -97788505 - L3 LINE CR1 -2 1575 1432 186 254 36 0 chr13 4086559 4086614 -97786555 - L2 LINE L2 -2 3311 3255 240 175 63 63 chr13 4088594 4088657 -97784512 - MLT1I LTR MaLR -33 376 314 2539 72 0 0 chr13 4089208 4089515 -97783654 - AluY SINE Alu -4 307 1 212 329 127 0 chr13 4090826 4090905 -97782264 + L2 LINE L2 3147 3235 -37 309 165 16 50 chr13 4090952 4091073 -97782096 + GA-rich Low_complexity Low_complexity 4 120 0 187 281 130 75 chr13 4093106 4093491 -97779678 + L2 LINE L2 2572 2977 -337 472 293 213 10 chr13 4093907 4094207 -97778962 + MLT1J LTR MaLR 1 361 -150 356 274 10 0 chr13 4095142 4095244 -97777925 - MIR SINE MIR -112 150 48 1650 188 38 0 chr13 4095834 4096122 -97777047 + AluJb SINE Alu 5 303 -9 1746 118 57 18 chr13 4099172 4099451 -97773718 - AluSx SINE Alu -10 302 13 231 86 0 29 chr13 4100750 4100785 -97772384 - HAL1 LINE L1 -2188 319 286 2706 127 26 5 chr13 4101650 4102069 -97771100 - MSTA LTR MaLR 0 428 1 259 273 0 45 chr13 4103223 4103311 -97769858 + MER112 DNA MER1_type 144 227 -33 1431 219 95 24 chr13 4105605 4105975 -97767194 + MSTD LTR MaLR 1 396 0 6860 239 35 35 chr13 4105979 4107706 -97765463 + MSTD-int LTR MaLR 4 1730 -5 1310 204 139 14 chr13 4107711 4108063 -97765106 + MSTD LTR MaLR 1 396 0 335 169 14 0 chr13 4108237 4108308 -97764861 + CT-rich Low_complexity Low_complexity 1 72 0 189 0 0 0 chr13 4108308 4108329 -97764840 + (TTTCC)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chr13 4108350 4108379 -97764790 + AT_rich Low_complexity Low_complexity 1 29 0 411 163 25 0 chr13 4109768 4109848 -97763321 - AluS SINE Alu -1 308 227 282 29 0 0 chr13 4109866 4109901 -97763268 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2074 110 0 24 chr13 4109901 4110188 -97762981 - AluSx SINE Alu -32 280 1 264 200 20 60 chr13 4110255 4110355 -97762814 - L1MC5 LINE L1 -48 7913 7818 646 75 0 0 chr13 4110575 4110669 -97762500 - AluY SINE Alu -1 310 217 229 343 75 8 chr13 4111565 4111699 -97761470 + MIR SINE MIR 39 181 -81 3345 187 31 26 chr13 4111962 4112678 -97760491 + LTR62 LTR ERVK 1 719 0 214 282 19 58 chr13 4112945 4113048 -97760121 - MIR SINE MIR -94 114 16 211 343 12 4 chr13 4113956 4114073 -97759096 + MIR SINE MIR 37 154 -67 900 259 34 7 chr13 4115441 4115734 -97757435 + L1M4 LINE L1 2950 3250 -2896 1270 189 95 5 chr13 4116753 4117181 -97755988 - LTR54 LTR ERV1 -1 497 1 25 83 0 0 chr13 4118095 4118155 -97755014 + AT_rich Low_complexity Low_complexity 1 60 0 227 79 26 0 chr13 4119673 4119711 -97753458 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1635 163 13 67 chr13 4119869 4120182 -97752987 + AluJo SINE Alu 13 308 -4 234 323 113 8 chr13 4121439 4121563 -97751606 + MIR SINE MIR 92 228 -34 2104 118 3 3 chr13 4121615 4121911 -97751258 - AluSx SINE Alu -16 296 1 276 255 10 82 chr13 4124066 4124164 -97749005 - MIR SINE MIR -18 244 154 351 113 0 0 chr13 4127601 4127654 -97745515 + (TG)n Simple_repeat Simple_repeat 2 54 0 1560 185 18 14 chr13 4127659 4127940 -97745229 - AluJo SINE Alu -30 282 1 3887 60 2 36 chr13 4128751 4129284 -97743885 - L1PA6 LINE L1 -5 6149 5635 564 249 11 28 chr13 4129675 4129852 -97743317 - MLT1A1 LTR MaLR -15 359 186 1016 173 0 12 chr13 4129867 4130040 -97743129 - FRAM SINE Alu -5 171 1 866 160 0 0 chr13 4130048 4130192 -97742977 - MLT1A1 LTR MaLR -220 145 2 206 328 31 0 chr13 4130831 4130895 -97742274 - L2 LINE L2 -70 3202 3137 344 157 41 27 chr13 4132041 4132188 -97740981 + (CA)n Simple_repeat Simple_repeat 1 149 0 346 211 45 30 chr13 4132199 4132332 -97740837 + (CA)n Simple_repeat Simple_repeat 1 135 0 238 172 35 23 chr13 4132345 4132432 -97740737 + (CA)n Simple_repeat Simple_repeat 1 88 0 875 287 137 45 chr13 4134055 4134588 -97738581 - MLT1G1 LTR MaLR 0 595 14 325 342 9 60 chr13 4134777 4134993 -97738176 - MIR3 SINE MIR -55 207 5 240 300 82 17 chr13 4136286 4136519 -97736650 + L1MEd LINE L1 901 1148 -4971 318 302 20 40 chr13 4136659 4136907 -97736262 + HAL1 LINE L1 1427 1669 -838 180 0 0 0 chr13 4137603 4137623 -97735546 + (TC)n Simple_repeat Simple_repeat 2 21 0 234 0 0 0 chr13 4137632 4137658 -97735511 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2363 73 3 0 chr13 4137661 4137949 -97735220 - AluY SINE Alu -22 289 1 324 351 57 16 chr13 4137961 4138206 -97734963 - L1ME LINE L1 -346 5816 5562 295 301 95 73 chr13 4141230 4141642 -97731527 - L2 LINE L2 -8 3264 2844 26 0 0 0 chr13 4142106 4142132 -97731037 + AT_rich Low_complexity Low_complexity 1 26 0 742 185 64 0 chr13 4142133 4142306 -97730863 - L1MA9 LINE L1 -46 6266 6083 1469 236 87 8 chr13 4142491 4143177 -97729992 + L1ME1 LINE L1 5002 5740 -426 509 244 88 42 chr13 4143272 4143510 -97729659 + L1ME1 LINE L1 5913 6161 -5 332 293 143 7 chr13 4143804 4143951 -97729218 - MIR SINE MIR -3 259 93 1496 274 16 16 chr13 4144222 4144737 -97728432 - L1ME1 LINE L1 -20 6146 5632 524 233 131 64 chr13 4144748 4145311 -97727858 - L1ME LINE L1 -5049 1034 459 234 111 19 56 chr13 4145452 4145506 -97727663 - L1ME LINE L1 -5685 385 334 202 205 26 0 chr13 4145628 4145667 -97727502 + GA-rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 4146468 4146490 -97726679 + AT_rich Low_complexity Low_complexity 1 22 0 678 329 49 23 chr13 4147341 4147645 -97725524 - L2 LINE L2 -4 3309 2998 253 212 96 111 chr13 4148159 4148357 -97724812 - MLT1J LTR MaLR -193 318 124 1327 227 79 67 chr13 4148398 4148932 -97724237 + MLT1F1 LTR MaLR 3 567 0 441 256 140 43 chr13 4149830 4149954 -97723215 - MIR SINE MIR -16 246 135 2166 121 7 7 chr13 4149954 4150261 -97722908 + AluSq SINE Alu 1 307 -6 441 256 140 43 chr13 4150261 4150343 -97722826 - MIR SINE MIR -127 135 20 553 309 45 22 chr13 4151457 4151680 -97721489 + MIR SINE MIR 35 262 0 323 381 23 23 chr13 4151693 4151866 -97721303 - MIR SINE MIR -71 191 19 23 0 0 0 chr13 4151924 4151947 -97721222 + AT_rich Low_complexity Low_complexity 1 23 0 613 348 163 12 chr13 4152643 4153227 -97719942 - L3 LINE CR1 -5 1572 901 358 117 0 39 chr13 4153269 4153346 -97719823 + (TCCCC)n Simple_repeat Simple_repeat 5 78 0 192 305 136 24 chr13 4153347 4153560 -97719609 - L3 LINE CR1 -701 876 640 609 291 110 89 chr13 4154115 4154805 -97718364 + HAL1 LINE L1 897 1608 -899 2293 93 0 7 chr13 4154805 4155105 -97718064 - AluSx SINE Alu -14 298 1 609 291 110 89 chr13 4155105 4155221 -97717948 + HAL1 LINE L1 1608 1720 -787 265 279 158 36 chr13 4155893 4156223 -97716946 + L1M4 LINE L1 2650 3019 -3127 541 352 109 28 chr13 4156256 4156759 -97716410 - L3 LINE CR1 -881 696 153 180 0 0 0 chr13 4156876 4156896 -97716273 + (T)n Simple_repeat Simple_repeat 1 20 0 231 302 73 10 chr13 4157167 4157263 -97715906 - L2 LINE L2 -34 3279 3178 2273 105 26 0 chr13 4160234 4160538 -97712631 + AluSx SINE Alu 1 312 0 335 298 19 10 chr13 4161280 4161384 -97711785 - MER5B DNA MER1_type -73 105 1 2253 186 21 5 chr13 4162128 4162547 -97710622 - MSTB LTR MaLR 0 426 1 514 311 45 70 chr13 4163643 4164091 -97709078 + L1M4 LINE L1 2853 3289 -2857 205 75 50 0 chr13 4165424 4165464 -97707705 + GA-rich Low_complexity Low_complexity 2 43 0 450 0 0 0 chr13 4165468 4165518 -97707651 + (TG)n Simple_repeat Simple_repeat 2 51 0 414 0 0 0 chr13 4166080 4166126 -97707043 + (CA)n Simple_repeat Simple_repeat 2 47 0 247 111 0 0 chr13 4166144 4166180 -97706989 + MLT2C2 LTR ERVL 429 464 0 2134 207 32 22 chr13 4166180 4166717 -97706452 - L1MB7 LINE L1 -256 6164 5623 * 5249 242 88 42 chr13 4166715 4167067 -97706102 - L1MB7 LINE L1 -2002 4380 4046 1543 203 3 20 chr13 4167067 4167362 -97705807 + AluJo SINE Alu 1 290 -22 5249 242 88 42 chr13 4167362 4171011 -97702158 - L1MB7 LINE L1 -2336 4046 68 405 0 0 0 chr13 4171011 4171056 -97702113 + (TG)n Simple_repeat Simple_repeat 2 46 0 5249 242 88 42 chr13 4171056 4171126 -97702043 - L1MB7 LINE L1 -6314 68 3 202 259 17 0 chr13 4172703 4172761 -97700408 + (TA)n Simple_repeat Simple_repeat 1 59 0 210 347 0 16 chr13 4173818 4173939 -97699230 + CT-rich Low_complexity Low_complexity 4 122 0 1085 207 95 0 chr13 4174319 4174573 -97698596 - MER110 LTR ERV1 -172 319 1 1257 246 163 20 chr13 4175371 4175777 -97697392 + L3 LINE CR1 1111 1574 -3 4390 187 48 14 chr13 4176128 4177026 -97696143 - L1MA7 LINE L1 -32 6259 5332 241 296 65 19 chr13 4177104 4177212 -97695957 + L2 LINE L2 3099 3211 -61 897 214 67 0 chr13 4178736 4178937 -97694232 + AluJo SINE Alu 96 308 0 219 184 0 41 chr13 4179530 4179579 -97693590 + CT-rich Low_complexity Low_complexity 4 50 0 21 0 0 0 chr13 4179928 4179949 -97693220 + AT_rich Low_complexity Low_complexity 1 21 0 422 296 122 13 chr13 4181168 4181398 -97691771 + MIR SINE MIR 7 261 -1 186 353 50 34 chr13 4181422 4181541 -97691628 - L2 LINE L2 -193 3079 2959 1196 305 117 54 chr13 4181620 4182770 -97690399 - L2 LINE L2 -444 2870 1611 345 47 0 0 chr13 4182770 4182813 -97690356 + (TG)n Simple_repeat Simple_repeat 2 44 0 1196 305 117 54 chr13 4182813 4183087 -97690082 - L2 LINE L2 -1703 1611 1356 590 262 43 0 chr13 4183120 4183284 -97689885 - MIR SINE MIR -3 259 89 2830 236 85 29 chr13 4183657 4183864 -97689305 - L1ME1 LINE L1 -5 6161 5967 1922 198 3 40 chr13 4183864 4184243 -97688926 - MLT1A1 LTR MaLR 0 365 1 2830 236 85 29 chr13 4184243 4185761 -97687408 - L1ME1 LINE L1 -199 5967 4358 * 3031 186 43 9 chr13 4185745 4186389 -97686780 - L1MC3 LINE L1 0 7785 7120 284 213 11 43 chr13 4186436 4186530 -97686639 + (CATA)n Simple_repeat Simple_repeat 2 92 0 2987 85 28 5 chr13 4186533 4186933 -97686236 - MLT2A2 LTR ERVL -44 409 1 8573 186 44 35 chr13 4186933 4187933 -97685236 - L1MC3 LINE L1 -660 7125 6099 3244 133 54 4 chr13 4187933 4188437 -97684732 - L1PB1 LINE L1 -3 6148 5620 8573 186 44 35 chr13 4188437 4189291 -97683878 - L1MC3 LINE L1 -1686 6099 5254 9333 35 10 3 chr13 4189338 4191189 -97681980 - L1PA3 LINE L1 -2 6153 4293 331 322 119 30 chr13 4192647 4192849 -97680320 - MIR SINE MIR -33 229 10 205 371 36 29 chr13 4192876 4193016 -97680153 + MER91A DNA MER1_type 1 141 -55 24 0 0 0 chr13 4195048 4195072 -97678097 + AT_rich Low_complexity Low_complexity 1 24 0 235 242 150 105 chr13 4197378 4197485 -97675684 - MER5B DNA MER1_type -17 161 43 2504 54 0 0 chr13 4197485 4197781 -97675388 + AluY SINE Alu 1 296 -15 235 242 150 105 chr13 4197781 4197826 -97675343 - MER5B DNA MER1_type -135 43 2 504 232 87 53 chr13 4198774 4198981 -97674188 - MLT1K LTR MaLR -9 579 366 374 169 0 0 chr13 4200780 4200845 -97672324 + Alu SINE Alu 235 299 -3 503 248 24 8 chr13 4201504 4201629 -97671540 - Charlie4 DNA MER1_type -12 1949 1823 385 273 76 35 chr13 4201704 4201902 -97671267 - LTR33 LTR ERVL -1 520 315 23 33 0 0 chr13 4202604 4202634 -97670535 + AT_rich Low_complexity Low_complexity 1 30 0 883 207 35 101 chr13 4204717 4205084 -97668085 - LTR37A LTR ERV1 0 426 84 239 305 17 44 chr13 4205222 4205393 -97667776 - MIR SINE MIR -21 241 3 23 0 0 0 chr13 4205712 4205735 -97667434 + AT_rich Low_complexity Low_complexity 1 23 0 627 211 57 51 chr13 4206722 4206897 -97666272 - MER63A DNA MER1_type -33 177 2 229 257 0 43 chr13 4206904 4206974 -97666195 + L2 LINE L2 3247 3313 0 232 253 172 20 chr13 4207159 4207258 -97665911 - MIR SINE MIR -112 150 37 180 258 45 30 chr13 4209139 4209205 -97663964 - L2 LINE L2 -1046 2268 2202 2096 152 35 11 chr13 4209946 4210321 -97662848 - MLT1B LTR MaLR 0 390 7 663 315 104 41 chr13 4211029 4211492 -97661677 - MLT1J LTR MaLR 0 511 20 2399 176 94 4 chr13 4212461 4212973 -97660196 + MER74A LTR ERVL 1 558 0 233 264 110 22 chr13 4212973 4213064 -97660105 + L2 LINE L2 3212 3310 -3 2211 100 10 0 chr13 4213465 4213577 -97659592 + AluSg SINE Alu 13 122 -188 243 0 0 0 chr13 4213577 4213604 -97659565 + (CA)n Simple_repeat Simple_repeat 2 28 0 2211 100 10 0 chr13 4213604 4213781 -97659388 + AluSg SINE Alu 122 305 -5 350 286 43 31 chr13 4216088 4216249 -97656920 - L3 LINE CR1 -35 1542 1380 494 317 81 52 chr13 4216353 4216738 -97656431 - L3 LINE CR1 -262 1315 920 2092 125 10 0 chr13 4217008 4217303 -97655866 + AluSx SINE Alu 1 298 -14 2488 69 0 19 chr13 4219436 4219753 -97653416 + AluY SINE Alu 1 311 0 209 238 16 16 chr13 4219768 4219831 -97653338 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 219 125 0 0 chr13 4220195 4220235 -97652934 + (TTAGGG)n Simple_repeat Simple_repeat 1 40 0 884 206 111 16 chr13 4220293 4220546 -97652623 - MER58B DNA MER1_type -9 332 56 2267 103 0 16 chr13 4220752 4221062 -97652107 - AluSg SINE Alu -5 305 1 2180 104 24 7 chr13 4221072 4221369 -97651800 - AluSg SINE Alu -8 302 1 311 350 51 10 chr13 4276366 4276563 -97596606 + L3 LINE CR1 685 889 -688 2144 116 0 3 chr13 4276585 4276894 -97596275 + AluSx SINE Alu 1 308 0 379 179 0 48 chr13 4277108 4277192 -97595977 - MIR SINE MIR -115 147 68 423 238 12 133 chr13 4277342 4277380 -97595789 + MIR SINE MIR 19 60 -202 2662 162 0 0 chr13 4277380 4277781 -97595388 + MER57A LTR ERV1 3 403 0 423 238 12 133 chr13 4277781 4277982 -97595187 + MIR SINE MIR 60 229 -33 432 284 112 0 chr13 4278471 4278587 -97594582 - L2 LINE L2 0 3272 3144 184 288 68 17 chr13 4279110 4279169 -97594000 + MER5B DNA MER1_type 80 141 -37 198 344 0 0 chr13 4281909 4281973 -97591196 + L2 LINE L2 3250 3313 0 338 264 181 28 chr13 4282428 4282572 -97590597 - MER5A DNA MER1_type 0 189 24 1677 171 33 26 chr13 4282636 4282941 -97590228 - AluJo SINE Alu -1 311 5 852 194 0 0 chr13 4285183 4285411 -97587758 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 1804 143 0 21 chr13 4286560 4286840 -97586329 + AluJb SINE Alu 9 282 -30 368 276 72 72 chr13 4287876 4288057 -97585112 - MIR SINE MIR -56 206 26 258 32 0 0 chr13 4289589 4289620 -97583549 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 396 59 0 0 chr13 4290359 4290410 -97582759 + (TG)n Simple_repeat Simple_repeat 1 51 0 203 309 229 29 chr13 4291417 4291592 -97581577 - MIR SINE MIR -7 255 46 224 293 0 0 chr13 4292234 4292292 -97580877 - L2 LINE L2 -97 3216 3159 390 234 0 0 chr13 4292351 4292505 -97580664 + (TG)n Simple_repeat Simple_repeat 1 154 0 819 196 68 0 chr13 4292644 4292807 -97580362 + MIR SINE MIR 67 240 -22 249 36 0 0 chr13 4293524 4293552 -97579617 - LTR1 LTR ERV1 0 785 758 490 248 16 31 chr13 4293599 4293728 -97579441 - HUERS-P2 LTR ERV1 -2961 127 1 3781 121 65 67 chr13 4293728 4294503 -97578666 - LTR1 LTR ERV1 0 785 13 601 205 6 99 chr13 4295252 4295423 -97577746 + MER63 DNA MER1_type 1 781 -281 666 103 45 13 chr13 4295596 4295752 -97577417 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 201 270 124 0 chr13 4295753 4295842 -97577327 + MIR3 SINE MIR 103 202 -6 501 275 84 0 chr13 4295922 4296100 -97577069 + L2 LINE L2 3112 3304 -9 389 349 23 0 chr13 4296116 4296245 -97576924 - MIR3 SINE MIR -62 146 15 223 317 108 36 chr13 4296617 4296784 -97576385 - L2 LINE L2 -24 3289 3111 549 192 144 0 chr13 4298551 4298676 -97574493 + LTR54B LTR ERV1 1 143 -355 1230 149 18 18 chr13 4298703 4298925 -97574244 + LTR54 LTR ERV1 289 510 0 464 129 26 17 chr13 4299635 4299751 -97573418 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 457 176 0 0 chr13 4299753 4299838 -97573331 + (TATG)n Simple_repeat Simple_repeat 2 86 0 267 271 14 0 chr13 4300277 4300347 -97572822 + L2 LINE L2 3240 3310 -3 736 261 14 21 chr13 4300446 4300778 -97572391 - MLT1A2 LTR MaLR 0 374 1 306 339 43 0 chr13 4301552 4301667 -97571502 - MER91C DNA MER1_type 0 140 21 708 316 95 17 chr13 4301887 4302359 -97570810 + LTR33 LTR ERVL 13 521 0 195 263 0 0 chr13 4302651 4302689 -97570480 + L2 LINE L2 3184 3221 -92 1346 146 175 5 chr13 4303238 4303646 -97569523 + MER44D DNA MER2_type 1 536 -69 1986 204 123 82 chr13 4303648 4304363 -97568806 + LTR1B LTR ERV1 2 745 -81 536 100 0 50 chr13 4304448 4304528 -97568641 + MER44D DNA MER2_type 530 605 0 623 268 127 53 chr13 4304675 4305220 -97567949 - L1MC4 LINE L1 -1 8041 7457 2368 85 7 0 chr13 4306003 4306310 -97566859 - AluY SINE Alu -2 309 1 403 234 82 68 chr13 4306365 4306794 -97566375 + MER52A LTR ERV1 1 572 -706 1771 135 4 29 chr13 4306958 4307239 -97565930 - AluSx SINE Alu -38 274 1 189 0 0 0 chr13 4308517 4308538 -97564631 + (A)n Simple_repeat Simple_repeat 1 21 0 319 333 94 17 chr13 4309115 4309295 -97563874 + MIR SINE MIR 4 197 -65 306 73 0 0 chr13 4309333 4309374 -97563795 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2010 94 72 0 chr13 4309377 4309642 -97563527 - AluSx SINE Alu -28 284 1 22 0 0 0 chr13 4309642 4309664 -97563505 + AT_rich Low_complexity Low_complexity 1 22 0 295 117 11 43 chr13 4309874 4309968 -97563201 + (TA)n Simple_repeat Simple_repeat 2 92 0 606 281 21 0 chr13 4311038 4311276 -97561893 - L1MDa LINE L1 -2967 3573 3331 * 10445 214 57 21 chr13 4311256 4314064 -97559105 - L1MDa LINE L1 -3616 2924 17 341 278 46 0 chr13 4314269 4314377 -97558792 - MIR SINE MIR -71 191 79 1252 264 71 23 chr13 4314602 4315041 -97558128 + LTR40c LTR ERVL 1 460 -5 291 28 0 0 chr13 4315393 4315429 -97557740 + (T)n Simple_repeat Simple_repeat 1 36 0 200 122 0 24 chr13 4316217 4316258 -97556911 + (TG)n Simple_repeat Simple_repeat 1 40 0 2331 90 0 13 chr13 4317326 4317636 -97555533 + AluY SINE Alu 1 306 -5 23 0 0 0 chr13 4318301 4318324 -97554845 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 4318704 4318727 -97554442 + (TA)n Simple_repeat Simple_repeat 1 23 0 191 245 0 41 chr13 4319333 4319382 -97553787 - L2 LINE L2 -16 3256 3210 292 250 0 0 chr13 4320547 4320607 -97552562 - L2 LINE L2 0 3313 3254 30 0 0 0 chr13 4320706 4320736 -97552433 + AT_rich Low_complexity Low_complexity 1 30 0 22 80 0 0 chr13 4320855 4320905 -97552264 + AT_rich Low_complexity Low_complexity 1 50 0 728 209 0 7 chr13 4321014 4321167 -97552002 - MLT1A1 LTR MaLR -213 152 1 584 296 21 34 chr13 4321326 4321559 -97551610 + MLT1J1 LTR MaLR 206 435 -11 1235 255 77 17 chr13 4321821 4322076 -97551093 - MLT1C LTR MaLR 0 467 178 378 0 0 0 chr13 4322076 4322118 -97551051 + (TG)n Simple_repeat Simple_repeat 2 43 0 1235 255 77 17 chr13 4322118 4322266 -97550903 - MLT1C LTR MaLR -289 178 40 238 203 0 17 chr13 4322878 4322937 -97550232 + MLT1J2 LTR MaLR 369 426 -24 289 285 115 33 chr13 4322969 4323081 -97550088 - L1ME LINE L1 -336 5785 5684 1786 104 4 4 chr13 4323081 4323321 -97549848 - AluSg/x SINE Alu 0 312 73 * 2346 74 0 17 chr13 4323319 4323618 -97549551 - AluY SINE Alu -17 294 1 289 285 115 33 chr13 4323618 4323776 -97549393 - L1ME LINE L1 -734 5387 5494 642 335 97 36 chr13 4323837 4324446 -97548723 + L2 LINE L2 1784 2429 -885 1134 260 142 21 chr13 4324511 4324977 -97548192 + MLT1E LTR MaLR 72 593 0 2139 118 3 22 chr13 4326472 4326786 -97546383 - AluSx SINE Alu -4 308 1 647 233 39 24 chr13 4326929 4327135 -97546034 + MER3 DNA MER1_type 1 209 0 181 229 0 0 chr13 4327242 4327277 -97545892 - L2 LINE L2 -20 3293 3259 390 74 0 0 chr13 4328831 4328885 -97544284 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 646 209 43 6 chr13 4330355 4330518 -97542651 + MER5A DNA MER1_type 3 171 -18 321 343 70 29 chr13 4330514 4330686 -97542483 + MIR SINE MIR 63 241 -21 * 297 258 258 0 chr13 4331266 4331355 -97541814 + MER5A DNA MER1_type 49 160 -29 207 291 70 57 chr13 4332225 4332383 -97540786 + MIR SINE MIR 93 252 -10 798 215 97 45 chr13 4334237 4334525 -97538644 + L1MDb LINE L1 43 345 -6064 304 327 60 33 chr13 4334788 4335207 -97537962 + L1M4 LINE L1 3786 4215 -1931 272 248 88 9 chr13 4335401 4335414 -97537755 - L1M4 LINE L1 -1302 4844 4833 2398 84 3 0 chr13 4335414 4335712 -97537457 - AluY SINE Alu -12 299 1 272 248 88 9 chr13 4335712 4335811 -97537358 - L1M4 LINE L1 -1313 4833 4723 23 33 0 0 chr13 4336181 4336211 -97536958 + AT_rich Low_complexity Low_complexity 1 30 0 535 183 148 0 chr13 4336696 4336811 -97536358 - FLAM_A SINE Alu -1 132 1 2314 202 127 33 chr13 4336960 4337803 -97535366 - MER69 DNA AcHobo -49 2477 1556 462 307 76 71 chr13 4337804 4338119 -97535050 + L2 LINE L2 2687 3010 -303 1372 191 25 86 chr13 4338119 4338443 -97534726 - AluJo SINE Alu -8 304 1 462 307 76 71 chr13 4338443 4338707 -97534462 + L2 LINE L2 3010 3271 -42 278 293 35 9 chr13 4338802 4338918 -97534251 - MER103 DNA DNA -45 121 3 549 350 120 19 chr13 4339098 4339524 -97533645 - L2 LINE L2 0 3272 2804 23 33 0 0 chr13 4340653 4340683 -97532486 + AT_rich Low_complexity Low_complexity 1 30 0 476 150 20 30 chr13 4340692 4340792 -97532377 - L1MA5 LINE L1 -2 6298 6200 231 356 58 19 chr13 4341641 4341668 -97531501 + L2 LINE L2 3154 3178 -94 2390 126 22 0 chr13 4341668 4342024 -97531145 - THE1B LTR MaLR 0 364 1 231 356 58 19 chr13 4342024 4342100 -97531069 + L2 LINE L2 3178 3261 -11 942 280 59 42 chr13 4342119 4342590 -97530579 - LTR16C LTR ERVL -9 482 4 3567 243 29 28 chr13 4342696 4343818 -97529351 - L1M4 LINE L1 -1209 4937 3814 3453 189 18 49 chr13 4343818 4344509 -97528660 + L1MB5 LINE L1 5160 5821 -353 2404 78 0 13 chr13 4344509 4344818 -97528351 + AluY SINE Alu 1 305 -6 3453 189 18 49 chr13 4344818 4345114 -97528055 + L1MB5 LINE L1 5821 6125 -49 309 260 75 12 chr13 4346537 4346710 -97526459 - L1ME4a LINE L1 -98 6023 5840 21 0 0 0 chr13 4346753 4346774 -97526395 + AT_rich Low_complexity Low_complexity 1 21 0 237 240 13 0 chr13 4346954 4347029 -97526140 - L1M4 LINE L1 -3959 2187 2112 1240 153 0 0 chr13 4347164 4347367 -97525802 - L1PA13 LINE L1 -3 6160 5958 2358 169 46 26 chr13 4347636 4348134 -97525035 - L1MC1 LINE L1 -6 6327 5820 1811 152 34 9 chr13 4348142 4348465 -97524704 - L1MC1 LINE L1 -562 5771 5441 948 202 23 43 chr13 4348467 4348724 -97524445 + MSTD LTR MaLR 145 396 0 290 289 13 13 chr13 4349525 4349601 -97523568 - MIR SINE MIR -159 103 28 2440 69 0 28 chr13 4351562 4351879 -97521290 - AluY SINE Alu -3 308 1 298 243 56 56 chr13 4353442 4353549 -97519620 - L2 LINE L2 0 3313 3207 843 202 10 30 chr13 4353687 4353890 -97519279 - MER3 DNA MER1_type -9 200 2 638 280 69 13 chr13 4354228 4354460 -97518709 - L2 LINE L2 -1 3312 3068 1412 259 120 30 chr13 4354460 4355008 -97518161 - L1MEc LINE L1 -3706 2509 2012 1801 103 118 8 chr13 4355008 4355270 -97517899 - AluSg1 SINE Alu -18 291 1 1412 259 120 30 chr13 4355270 4355822 -97517347 - L1MEc LINE L1 -4203 2012 1511 2583 123 5 0 chr13 4355822 4356195 -97516974 - THE1C LTR MaLR 0 375 1 10221 115 45 3 chr13 4356195 4357711 -97515458 - THE1C-int LTR MaLR 0 1580 1 2631 106 3 13 chr13 4357712 4358090 -97515079 - THE1C LTR MaLR -1 374 1 1412 259 120 30 chr13 4358090 4358153 -97515016 - L1MEc LINE L1 -4703 1512 1283 1552 188 14 17 chr13 4358153 4358445 -97514724 + AluJb SINE Alu 1 291 -21 574 304 80 30 chr13 4358588 4358953 -97514216 - L2 LINE L2 -824 2490 2108 2093 249 37 22 chr13 4359118 4359195 -97513974 - L1M4 LINE L1 -1816 4828 4754 192 77 0 0 chr13 4359195 4359221 -97513948 + (TG)n Simple_repeat Simple_repeat 2 27 0 2093 249 37 22 chr13 4359221 4359897 -97513272 - L1M4 LINE L1 -1890 4754 4064 1144 204 84 62 chr13 4359897 4360300 -97512869 - MLT1C LTR MaLR 0 467 56 519 273 32 16 chr13 4360343 4360592 -97512577 - L1M4 LINE L1 -2575 4069 3817 * 6242 70 6 30 chr13 4360562 4361474 -97511695 - L1PA7 LINE L1 -3 6649 5760 648 239 44 0 chr13 4361468 4361648 -97511521 - L1M4 LINE L1 -6353 189 2 * 283 370 0 16 chr13 4362215 4362342 -97510827 - MIR3 SINE MIR -6 202 78 290 230 103 23 chr13 4362665 4362752 -97510417 - L2 LINE L2 -10 3262 3169 188 214 71 0 chr13 4363240 4363282 -97509887 - L2 LINE L2 -2 3311 3267 1255 202 77 36 chr13 4364730 4365121 -97508048 + MLT1C LTR MaLR 60 466 -1 477 260 3 39 chr13 4366067 4366397 -97506772 + CT-rich Low_complexity Low_complexity 1 318 0 7027 54 22 0 chr13 4366513 4367443 -97505726 - L1PA7 LINE L1 -4 6150 5215 11575 127 7 36 chr13 4367443 4370516 -97502653 - L1P3 LINE L1 -3393 3068 12 21 36 0 0 chr13 4370517 4370545 -97502624 + AT_rich Low_complexity Low_complexity 1 28 0 515 100 11 11 chr13 4372391 4372481 -97500688 - L1MB8 LINE L1 0 6178 6089 3356 175 45 7 chr13 4372496 4373205 -97499964 - L1MB4 LINE L1 -6 6174 5439 217 237 129 21 chr13 4373421 4373514 -97499655 + MIR SINE MIR 150 252 -10 2368 72 7 3 chr13 4375399 4375691 -97497478 + AluSq SINE Alu 1 293 -20 1216 126 37 0 chr13 4375744 4375934 -97497235 + MER30 DNA MER1_type 1 197 -33 914 231 114 70 chr13 4378031 4378460 -97494709 + LTR37B LTR ERV1 21 468 0 38 39 0 0 chr13 4378761 4378813 -97494356 + AT_rich Low_complexity Low_complexity 1 52 0 238 329 14 0 chr13 4378960 4379033 -97494136 - L2 LINE L2 -206 3066 2993 320 161 81 0 chr13 4380221 4380235 -97492934 - MER46A DNA MER2_type -73 163 145 13965 142 19 107 chr13 4380235 4382570 -97490599 + Tigger4(Zombi) DNA MER2_type 1 2016 -715 2538 20 20 0 chr13 4382570 4382871 -97490298 + L1PA2 LINE L1 5846 6155 0 13965 142 19 107 chr13 4382871 4383529 -97489640 + Tigger4(Zombi) DNA MER2_type 2016 2730 -1 755 163 7 7 chr13 4383687 4383822 -97489347 + Tigger4(Zombi) DNA MER2_type 1803 1937 -794 333 321 52 33 chr13 4383858 4384070 -97489099 + L1MEc LINE L1 1304 1519 -4877 335 219 30 116 chr13 4384367 4384531 -97488638 + L1MEc LINE L1 2217 2366 -3849 405 204 176 19 chr13 4384569 4384677 -97488492 - L2 LINE L2 -2 3311 3187 403 319 95 51 chr13 4384850 4385239 -97487930 - LTR33 LTR ERVL -11 510 105 316 285 68 82 chr13 4385311 4385592 -97487577 + L1MEc LINE L1 3062 3338 -2877 692 347 34 9 chr13 4385862 4386185 -97486984 + MLT1J LTR MaLR 71 401 -110 1867 121 0 4 chr13 4386699 4386955 -97486214 + AluSx SINE Alu 35 289 -23 499 313 72 24 chr13 4387107 4387442 -97485727 + L1MEc LINE L1 118 468 -5928 * 1725 268 44 40 chr13 4387427 4388425 -97484744 + L1MEc LINE L1 2545 3546 -2669 862 237 68 22 chr13 4388430 4388708 -97484461 - L1MB8 LINE L1 0 6178 5888 2653 201 22 30 chr13 4388711 4389627 -97483542 - L1MB8 LINE L1 -428 5756 4854 2018 107 0 58 chr13 4389627 4389937 -97483232 + AluSx SINE Alu 1 292 -20 2653 201 22 30 chr13 4389937 4390130 -97483039 - L1MB8 LINE L1 -1330 4854 4661 4353 195 70 6 chr13 4390130 4390972 -97482197 - MER54A LTR ERVL -5 896 1 336 152 45 125 chr13 4390978 4391090 -97482079 - L1MB8 LINE L1 -1482 4664 4562 2053 149 97 20 chr13 4391092 4391482 -97481687 + MSTA LTR MaLR 9 428 0 8225 159 33 57 chr13 4391487 4391951 -97481218 + MSTA-int LTR MaLR 6 480 -1100 2789 22 0 0 chr13 4391951 4392262 -97480907 + AluYa5 SINE Alu 1 311 0 8225 159 33 57 chr13 4392262 4393411 -97479758 + MSTA-int LTR MaLR 480 1580 0 2169 134 84 22 chr13 4393411 4393814 -97479355 + MSTA LTR MaLR 1 428 0 1815 237 18 27 chr13 4393814 4394363 -97478806 - L1MB8 LINE L1 -1582 4564 4021 213 39 0 0 chr13 4394368 4394394 -97478775 + (TG)n Simple_repeat Simple_repeat 2 27 0 10300 159 9 3 chr13 4394429 4396426 -97476743 + L1P4 LINE L1 3511 5515 -653 883 214 0 6 chr13 4396437 4396610 -97476559 - AluJb SINE Alu -25 287 116 1497 196 58 58 chr13 4396610 4397038 -97476131 + L1ME1 LINE L1 5510 6079 -255 2799 19 0 0 chr13 4397038 4397348 -97475821 + AluYa5 SINE Alu 1 310 -1 1497 196 58 58 chr13 4397348 4397595 -97475574 + L1ME1 LINE L1 6079 6325 -9 1356 229 38 24 chr13 4397599 4397939 -97475230 + MLT1A1 LTR MaLR 3 347 -18 522 271 21 0 chr13 4398013 4398201 -97474968 + L1ME1 LINE L1 2189 2380 -3766 1037 184 68 138 chr13 4398201 4398598 -97474571 - LOR1a LTR ERV1 -13 484 116 2035 284 65 12 chr13 4398629 4399684 -97473485 + L1ME1 LINE L1 2375 3485 -2661 43168 48 5 0 chr13 4399699 4405824 -97467345 + L1PA4 LINE L1 4 6155 0 3279 260 115 24 chr13 4405839 4406097 -97467072 + L1ME1 LINE L1 3497 3730 -2436 2200 79 4 0 chr13 4406097 4406375 -97466794 + AluY SINE Alu 19 297 -14 3279 260 115 24 chr13 4406375 4408548 -97464621 + L1ME1 LINE L1 3730 6131 -35 2154 75 11 4 chr13 4409017 4409327 -97463842 + AluY SINE Alu 1 312 0 23 0 0 0 chr13 4410187 4410210 -97462959 + AT_rich Low_complexity Low_complexity 1 23 0 1441 149 52 45 chr13 4410338 4410647 -97462522 - L1MA9 LINE L1 -5 6307 5997 28 0 0 0 chr13 4411151 4411179 -97461990 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 4411836 4411864 -97461305 + AT_rich Low_complexity Low_complexity 1 28 0 2411 65 3 0 chr13 4411864 4412156 -97461013 + AluSp SINE Alu 1 293 -20 8184 169 24 51 chr13 4412159 4414699 -97458470 - L1MA4 LINE L1 -8 6292 3827 5936 23 0 0 chr13 4414699 4415386 -97457783 - L1PA2 LINE L1 -2 6153 5467 8184 169 24 51 chr13 4415386 4415659 -97457510 - L1MA4 LINE L1 -2473 3827 3548 10241 181 16 2 chr13 4415669 4418388 -97454781 + L1PA13 LINE L1 3428 6163 0 5365 166 45 16 chr13 4418388 4418897 -97454272 + L1MA5 LINE L1 4325 4818 -1482 1119 169 29 14 chr13 4418897 4419104 -97454065 - MER6B DNA MER2_type 0 210 1 5365 166 45 16 chr13 4419104 4420513 -97452656 + L1MA5 LINE L1 4818 6299 -1 25 31 0 0 chr13 4420668 4420700 -97452469 + AT_rich Low_complexity Low_complexity 1 32 0 228 35 0 0 chr13 4421507 4421536 -97451633 + (TG)n Simple_repeat Simple_repeat 2 30 0 231 88 0 0 chr13 4422401 4422435 -97450734 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 4146 129 9 5 chr13 4422624 4423274 -97449895 - MER39B LTR ERV1 0 653 1 1015 211 106 116 chr13 4423348 4423944 -97449225 + LTR49 LTR ERV1 5 594 -1 2044 161 36 28 chr13 4424825 4425185 -97447984 - THE1B LTR MaLR -1 363 1 11175 107 14 0 chr13 4425185 4426744 -97446425 - THE1B-int LTR MaLR 0 1580 1 2177 138 33 25 chr13 4426744 4427105 -97446064 - THE1B LTR MaLR 0 364 1 32 0 0 0 chr13 4427170 4427202 -97445967 + AT_rich Low_complexity Low_complexity 1 32 0 733 204 41 0 chr13 4427675 4427822 -97445347 + MLT1J2 LTR MaLR 16 168 -282 492 251 32 70 chr13 4427861 4428048 -97445121 + MLT1J2 LTR MaLR 245 424 -26 24 53 0 0 chr13 4429414 4429452 -97443717 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 4430094 4430115 -97443054 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr13 4430479 4430525 -97442644 + (TG)n Simple_repeat Simple_repeat 2 47 0 309 290 74 79 chr13 4431582 4431961 -97441208 + L1MDa LINE L1 1039 1415 -5125 1608 299 176 18 chr13 4431973 4432745 -97440424 + L1M4b LINE L1 374 1267 -5592 1544 190 83 21 chr13 4432753 4433126 -97440043 + MSTD LTR MaLR 1 396 0 312 27 0 0 chr13 4433362 4433399 -97439770 + (TTA)n Simple_repeat Simple_repeat 3 39 0 14588 32 1 1 chr13 4433399 4435896 -97437273 - L1PA4 LINE L1 -18 6137 3636 2274 77 7 0 chr13 4437935 4438222 -97434947 + AluSp SINE Alu 14 302 -11 2650 42 0 0 chr13 4438540 4438846 -97434323 - AluY SINE Alu -5 306 1 232 259 19 0 chr13 4438889 4438997 -97434172 + (TA)n Simple_repeat Simple_repeat 1 110 0 262 336 118 50 chr13 4439229 4439586 -97433583 - L2 LINE L2 -12 3301 2921 582 254 57 89 chr13 4440327 4440820 -97432349 + MLT1H LTR MaLR 39 595 0 425 131 12 0 chr13 4441485 4441569 -97431600 + CT-rich Low_complexity Low_complexity 2 86 0 584 347 98 23 chr13 4441609 4442047 -97431122 + L3 LINE CR1 916 1386 -191 21 0 0 0 chr13 4442685 4442706 -97430463 + AT_rich Low_complexity Low_complexity 1 21 0 585 287 35 17 chr13 4444705 4444879 -97428290 + MIR SINE MIR 36 212 -50 491 266 167 27 chr13 4445452 4445674 -97427495 + MIR SINE MIR 10 262 0 258 268 0 0 chr13 4445883 4445995 -97427174 + (TA)n Simple_repeat Simple_repeat 2 113 0 241 318 0 0 chr13 4446805 4446868 -97426301 - L3b LINE CR1 -139 1444 1382 2351 92 6 13 chr13 4447293 4447608 -97425561 + AluSp SINE Alu 1 313 0 709 279 107 38 chr13 4447704 4448356 -97424813 + L1ME4a LINE L1 5278 5974 -147 280 290 6 0 chr13 4449044 4449129 -97424040 - MIR3 SINE MIR -22 186 100 189 255 0 39 chr13 4449214 4449265 -97423904 - L3 LINE CR1 -603 974 926 601 347 73 29 chr13 4450258 4450736 -97422433 + L2 LINE L2 2808 3306 -7 1337 189 184 19 chr13 4451531 4451954 -97421215 + LTR54B LTR ERV1 2 494 -4 23 54 0 0 chr13 4452074 4452111 -97421058 + AT_rich Low_complexity Low_complexity 1 37 0 306 330 78 35 chr13 4452587 4452869 -97420300 - L1ME LINE L1 -502 6117 5824 244 258 48 0 chr13 4453067 4453129 -97420040 - MIR SINE MIR -67 141 77 222 200 0 0 chr13 4454353 4454393 -97418776 + CT-rich Low_complexity Low_complexity 2 41 0 587 226 43 24 chr13 4454548 4454712 -97418457 - MER96B DNA MER1_type? -238 179 13 2622 36 0 0 chr13 4455752 4456053 -97417116 - AluY SINE Alu -10 301 1 240 216 284 11 chr13 4457968 4458056 -97415113 + L2 LINE L2 3199 3310 -3 23 0 0 0 chr13 4458075 4458098 -97415071 + AT_rich Low_complexity Low_complexity 1 23 0 222 319 78 35 chr13 4460405 4460521 -97412648 - MIR SINE MIR -70 138 18 290 136 0 0 chr13 4462319 4462363 -97410806 + L1PBa LINE L1 2443 2486 -4377 705 146 88 0 chr13 4462363 4462500 -97410669 + L1PBa LINE L1 2444 2592 -4271 1221 213 28 19 chr13 4462566 4462927 -97410242 + L1PB3 LINE L1 5040 5403 -743 3471 142 30 5 chr13 4462936 4463526 -97409643 + L1PB3 LINE L1 5543 6147 -7 37 102 0 0 chr13 4463822 4463950 -97409219 + AT_rich Low_complexity Low_complexity 1 128 0 764 365 90 9 chr13 4464141 4464687 -97408482 + L2 LINE L2 1763 2352 -962 437 240 48 32 chr13 4464894 4465019 -97408150 - L2 LINE L2 0 3313 3187 504 238 0 10 chr13 4465091 4465192 -97407977 - AluJb SINE Alu -17 295 196 635 240 0 7 chr13 4465211 4465361 -97407808 - L1ME LINE L1 -1160 5484 5336 3689 236 86 42 chr13 4465370 4467088 -97406081 - L1ME LINE L1 -3850 2794 1001 815 263 48 12 chr13 4467304 4467555 -97405614 - L1ME LINE L1 -6281 261 2 1664 219 51 22 chr13 4467564 4468071 -97405098 - L1M4 LINE L1 -1314 4832 4311 403 325 70 37 chr13 4468078 4468349 -97404820 + L2 LINE L2 2698 2977 -337 2624 226 42 8 chr13 4468362 4468954 -97404215 + L1MC1 LINE L1 4 615 -5811 290 275 14 0 chr13 4468957 4469026 -97404143 + L1MC1 LINE L1 573 642 -5784 6519 238 49 7 chr13 4469027 4471134 -97402035 + L1MC1 LINE L1 3147 5342 -1084 6179 133 39 18 chr13 4471146 4472219 -97400950 + L1MC1 LINE L1 5518 6612 -1 30 45 0 0 chr13 4472434 4472478 -97400691 + AT_rich Low_complexity Low_complexity 1 44 0 331 138 0 94 chr13 4472479 4472660 -97400509 + (TAA)n Simple_repeat Simple_repeat 3 166 0 323 278 11 0 chr13 4472660 4472750 -97400419 - L1MC4 LINE L1 -1338 6704 6614 271 271 0 0 chr13 4472751 4472836 -97400333 + (TA)n Simple_repeat Simple_repeat 1 85 0 260 347 68 16 chr13 4472984 4473174 -97399995 - MIR SINE MIR -61 201 2 391 370 74 31 chr13 4473285 4473799 -97399370 - L2 LINE L2 -2606 708 173 2105 118 7 0 chr13 4474039 4474326 -97398843 + AluSx SINE Alu 1 289 -23 245 377 85 41 chr13 4476621 4477176 -97395993 + L2 LINE L2 212 790 -2524 798 276 5 5 chr13 4477816 4478001 -97395168 - MIR SINE MIR -20 242 58 865 249 13 27 chr13 4478365 4478590 -97394579 + MIR SINE MIR 41 262 0 206 279 0 0 chr13 4478617 4478660 -97394509 + L3 LINE CR1 731 773 -804 209 343 168 22 chr13 4481151 4481288 -97391881 - L2 LINE L2 -605 2709 2553 6171 87 14 2 chr13 4482888 4483732 -97389437 - L1PA10 LINE L1 -11 6157 5304 186 259 190 9 chr13 4483927 4484043 -97389126 - L2 LINE L2 -100 3213 3077 21 36 0 0 chr13 4484939 4484967 -97388202 + AT_rich Low_complexity Low_complexity 1 28 0 215 245 0 0 chr13 4485504 4485557 -97387612 + T-rich Low_complexity Low_complexity 1 53 0 927 150 40 111 chr13 4485601 4485827 -97387342 - MLT1B LTR MaLR 0 390 181 392 182 0 26 chr13 4485831 4485908 -97387261 - MLT1B LTR MaLR -315 75 1 1199 204 65 46 chr13 4486313 4486709 -97386460 + MER57A LTR ERV1 19 403 0 26 0 0 0 chr13 4486722 4486748 -97386421 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr13 4486783 4486832 -97386337 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 4487658 4487680 -97385489 + AT_rich Low_complexity Low_complexity 1 22 0 248 188 31 47 chr13 4488595 4488659 -97384510 + L1MEc LINE L1 1924 1986 -4410 301 278 87 87 chr13 4488768 4489020 -97384149 + L1MEc LINE L1 2120 2371 -4025 709 271 92 0 chr13 4489263 4489492 -97383677 + MER46C DNA MER2_type 10 259 -79 618 78 29 0 chr13 4489610 4489712 -97383457 + (GA)n Simple_repeat Simple_repeat 2 106 0 230 285 89 16 chr13 4489846 4489969 -97383200 + L1MEc LINE L1 2713 2844 -3371 829 20 20 0 chr13 4489974 4490075 -97383094 + L1PA4 LINE L1 6052 6154 -1 2341 52 3 14 chr13 4490501 4490790 -97382379 - AluY SINE Alu -11 300 15 212 119 0 24 chr13 4491582 4491624 -97381545 + (GA)n Simple_repeat Simple_repeat 2 42 0 302 237 185 52 chr13 4492029 4492164 -97381005 + MIR SINE MIR 36 188 -74 2394 82 0 3 chr13 4492214 4492518 -97380651 - AluSp SINE Alu -10 303 1 22 0 0 0 chr13 4492619 4492641 -97380528 + AT_rich Low_complexity Low_complexity 1 22 0 773 144 44 62 chr13 4492641 4492801 -97380368 - MER4D LTR ERV1 -25 878 722 * 1332 87 61 6 chr13 4492776 4493018 -97380151 - MER4D LTR ERV1 -311 592 296 274 303 13 0 chr13 4493194 4493270 -97379899 - MLT1I LTR MaLR -248 161 85 219 269 155 87 chr13 4493645 4493682 -97379487 + MIR SINE MIR 29 62 -200 1732 146 62 4 chr13 4493682 4493957 -97379212 - AluJb SINE Alu -20 292 2 219 269 155 87 chr13 4493957 4494138 -97379031 + MIR SINE MIR 62 262 0 271 241 51 0 chr13 4494358 4494437 -97378732 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1446 263 78 36 chr13 4495186 4495818 -97377351 - L1ME3A LINE L1 -55 6509 5852 * 2916 273 108 51 chr13 4495810 4496975 -97376194 - L1MDa LINE L1 -1423 5117 4020 2377 132 26 33 chr13 4496975 4497039 -97376130 - L1MA9 LINE L1 0 6312 6249 2444 60 0 25 chr13 4497039 4497358 -97375811 - AluY SINE Alu 0 311 1 2377 132 26 33 chr13 4497358 4497748 -97375421 - L1MA9 LINE L1 -63 6249 5861 2916 273 108 51 chr13 4497748 4498122 -97375047 - L1MDa LINE L1 -2520 4020 3669 2293 97 0 0 chr13 4498122 4498420 -97374749 - AluSx SINE Alu -14 298 1 2916 273 108 51 chr13 4498420 4500477 -97372692 - L1MDa LINE L1 -2871 3669 1297 547 122 0 0 chr13 4501092 4501174 -97371995 + L1MC1 LINE L1 6247 6328 -5 1377 53 72 91 chr13 4502014 4502223 -97370946 + AluSg SINE Alu 1 205 -105 1856 80 0 28 chr13 4502224 4502494 -97370675 + AluY SINE Alu 42 304 0 3137 183 51 37 chr13 4502572 4503321 -97369848 + L1MC3 LINE L1 6935 7693 -92 236 203 17 0 chr13 4503462 4503521 -97369648 - L1MC3 LINE L1 -151 7634 7575 292 181 24 48 chr13 4503522 4503605 -97369564 + L1MC3 LINE L1 7705 7785 0 21 0 0 0 chr13 4503764 4503785 -97369384 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 4504122 4504150 -97369019 + AT_rich Low_complexity Low_complexity 1 28 0 212 343 0 14 chr13 4506268 4506341 -97366828 - L2 LINE L2 0 3313 3242 4730 206 27 39 chr13 4506758 4507916 -97365253 + L1MC3 LINE L1 6641 7784 -1 342 0 0 0 chr13 4509626 4509664 -97363505 + (TG)n Simple_repeat Simple_repeat 2 39 0 3429 188 160 12 chr13 4510591 4511368 -97361801 - THE1C-int LTR MaLR -757 894 3 1678 140 50 20 chr13 4511370 4511670 -97361499 - THE1C LTR MaLR 0 375 67 687 172 9 0 chr13 4512198 4512314 -97360855 + MLT1A1 LTR MaLR 249 365 0 224 320 8 57 chr13 4514189 4514311 -97358858 + L2 LINE L2 3155 3270 -43 23 0 0 0 chr13 4514319 4514342 -97358827 + AT_rich Low_complexity Low_complexity 1 23 0 738 171 0 0 chr13 4514345 4514474 -97358695 - L1MA5 LINE L1 -3 6297 6169 248 333 0 0 chr13 4514635 4514707 -97358462 + (TCCA)n Simple_repeat Simple_repeat 2 73 0 276 100 0 0 chr13 4515641 4515681 -97357488 + (TG)n Simple_repeat Simple_repeat 1 40 0 430 274 51 57 chr13 4515699 4515874 -97357295 + L3 LINE CR1 923 1096 -481 284 384 18 0 chr13 4515880 4515992 -97357177 + L3 LINE CR1 1461 1574 -3 296 334 26 0 chr13 4516029 4516143 -97357026 - MIR SINE MIR -64 144 19 187 346 141 5 chr13 4516143 4516328 -97356841 + L3 LINE CR1 1098 1307 -270 236 275 119 0 chr13 4516475 4516584 -97356585 + MLT1J LTR MaLR 32 153 -358 346 277 42 50 chr13 4516902 4517162 -97356007 + HAL1 LINE L1 2246 2503 -4 1908 94 12 101 chr13 4518571 4518899 -97354270 - AluSq SINE Alu -14 299 1 25 0 0 0 chr13 4518901 4518926 -97354243 + AT_rich Low_complexity Low_complexity 1 25 0 231 292 45 0 chr13 4720187 4720276 -97152893 + MER112 DNA MER1_type 19 111 -149 291 140 0 0 chr13 4720285 4720335 -97152834 + (T)n Simple_repeat Simple_repeat 1 50 0 1652 94 8 0 chr13 4720999 4721233 -97151936 - L1PA11 LINE L1 0 6174 5939 530 213 7 7 chr13 4721370 4721506 -97151663 + MER3 DNA MER1_type 34 122 -87 1216 206 90 27 chr13 4721514 4721764 -97151405 + MER3 DNA MER1_type 2234 2516 -108 2265 120 0 18 chr13 4721764 4722105 -97151064 - MER1B DNA MER1_type 0 337 3 1216 206 90 27 chr13 4722105 4722222 -97150947 + MER3 DNA MER1_type 2516 2624 0 394 281 61 0 chr13 4722358 4722501 -97150668 - MIR SINE MIR -67 141 8 296 269 21 21 chr13 4722779 4722872 -97150297 - MIR SINE MIR 0 262 170 202 214 60 60 chr13 4722963 4723047 -97150122 - MIR SINE MIR -102 106 23 544 232 8 24 chr13 4723924 4724049 -97149120 + MIR SINE MIR 32 154 -108 181 352 45 50 chr13 4724295 4724474 -97148695 + L2 LINE L2 2576 2753 -561 4468 236 34 38 chr13 4724591 4725370 -97147799 + L1MC1 LINE L1 3193 3965 -2181 1222 222 12 102 chr13 4725370 4725771 -97147398 + MLT1A1 LTR MaLR 1 365 0 4468 236 34 38 chr13 4725771 4726403 -97146766 + L1MC1 LINE L1 3965 4598 -1548 1514 78 4 91 chr13 4726503 4726745 -97146424 - MLT2A2 LTR ERVL -232 221 1 2111 207 56 14 chr13 4726750 4727195 -97145974 - MER88 LTR ERVL 0 464 1 5341 181 43 38 chr13 4727195 4728389 -97144780 + L1MC1 LINE L1 4651 5840 -493 2009 95 57 3 chr13 4728389 4728672 -97144497 + AluSq SINE Alu 1 298 -15 5341 181 43 38 chr13 4728672 4729168 -97144001 + L1MC1 LINE L1 5840 6332 -1 366 309 98 66 chr13 4729200 4729669 -97143500 + L1ME4a LINE L1 2506 2989 -3157 25 0 0 0 chr13 4729682 4729707 -97143462 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 4730069 4730098 -97143071 + AT_rich Low_complexity Low_complexity 1 29 0 327 303 20 7 chr13 4730323 4730509 -97142660 + L1ME4a LINE L1 5282 5468 -723 302 308 121 57 chr13 4730526 4730965 -97142204 + L1ME4a LINE L1 5491 5957 -164 23 0 0 0 chr13 4730988 4731011 -97142158 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr13 4731115 4731142 -97142027 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr13 4731284 4731314 -97141855 + AT_rich Low_complexity Low_complexity 1 30 0 591 280 0 36 chr13 4731353 4731521 -97141648 - MIR SINE MIR 0 262 101 2324 61 3 26 chr13 4731618 4731931 -97141238 + AluY SINE Alu 1 306 -5 2020 40 24 12 chr13 4731931 4732180 -97140989 + AluY SINE Alu 50 302 -9 2559 51 3 3 chr13 4732190 4732501 -97140668 + AluY SINE Alu 1 311 0 2487 213 114 20 chr13 4733065 4733826 -97139343 - L1ME2 LINE L1 -15 6149 5317 739 234 43 59 chr13 4733808 4734180 -97138989 - L1ME2 LINE L1 -1698 4448 4083 * 288 238 60 12 chr13 4734213 4734297 -97138872 - MLT1C LTR MaLR -379 88 1 633 173 30 23 chr13 4734297 4734430 -97138739 - MLT1C-int LTR MaLR 0 1371 1238 245 172 35 52 chr13 4734438 4734496 -97138673 - MLT1C-int LTR MaLR -110 1625 1569 3320 255 67 36 chr13 4734654 4735798 -97137371 - MLT1C-int LTR MaLR -152 1219 40 435 202 0 0 chr13 4736328 4736422 -97136747 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 2118 43 0 0 chr13 4738784 4739038 -97134131 - L1PA3 LINE L1 -3 6152 5899 5590 159 22 5 chr13 4739450 4740518 -97132651 - L1 LINE L1 -1277 4869 3783 3773 169 29 69 chr13 4740507 4741159 -97132010 + L1MA7 LINE L1 5455 6132 -159 * 1510 74 5 0 chr13 4741159 4741349 -97131820 - AluY SINE Alu -9 302 112 283 71 0 24 chr13 4741349 4741385 -97131784 - AluY SINE Alu -268 35 1 3773 169 29 69 chr13 4741385 4741568 -97131601 + L1MA7 LINE L1 6130 6291 0 1899 134 28 3 chr13 4742977 4743261 -97129908 - AluSx SINE Alu -21 291 1 332 385 65 7 chr13 4743346 4743621 -97129548 - Tigger8 DNA MER2_type -22 644 354 297 231 56 37 chr13 4743983 4744091 -97129078 - MIR3 SINE MIR 0 208 99 233 204 0 0 chr13 4744220 4744269 -97128900 - L1MB4 LINE L1 -6 6174 6126 2202 58 10 48 chr13 4745146 4745457 -97127712 + AluY SINE Alu 1 299 -12 969 243 18 74 chr13 4746000 4746311 -97126858 - L1M4 LINE L1 -1232 5332 5005 2488 56 0 3 chr13 4746311 4746613 -97126556 - AluY SINE Alu -10 301 1 969 243 18 74 chr13 4746613 4746921 -97126248 - L1M4 LINE L1 -1559 5005 4644 2734 239 51 40 chr13 4746937 4747077 -97126092 - L1MCb LINE L1 -2998 3566 3429 574 128 77 0 chr13 4747077 4747194 -97125975 - L1MA9 LINE L1 -10 6302 6177 2734 239 51 40 chr13 4747194 4748154 -97125015 - L1MCb LINE L1 -3135 3429 2456 2200 116 0 3 chr13 4748154 4748457 -97124712 - AluSq SINE Alu -11 302 1 2734 239 51 40 chr13 4748457 4748712 -97124457 - L1MCb LINE L1 -4108 2456 2205 3669 243 67 24 chr13 4748745 4750589 -97122580 - L1MCb LINE L1 -4440 2124 3 850 210 19 39 chr13 4750960 4751217 -97121952 - MER96B DNA MER1_type? -2 415 164 216 274 0 0 chr13 4751525 4751576 -97121593 + (CATA)n Simple_repeat Simple_repeat 1 51 0 471 63 0 0 chr13 4751772 4751835 -97121334 + (TA)n Simple_repeat Simple_repeat 2 64 0 376 218 40 10 chr13 4751835 4751927 -97121242 - L1MA9 LINE L1 -90 6222 6125 24 53 0 0 chr13 4752066 4752104 -97121065 + AT_rich Low_complexity Low_complexity 1 38 0 327 149 0 0 chr13 4752526 4752600 -97120569 + (TA)n Simple_repeat Simple_repeat 2 75 0 812 273 23 23 chr13 4754065 4754373 -97118796 + HAL1 LINE L1 2063 2370 -137 2275 95 33 10 chr13 4754418 4754723 -97118446 - AluSx SINE Alu 0 312 1 492 268 258 5 chr13 4755063 4755272 -97117897 + MIR SINE MIR 1 262 0 318 341 34 52 chr13 4755401 4755668 -97117501 + L2 LINE L2 3033 3294 -19 1348 202 125 38 chr13 4755821 4756264 -97116905 + MER66A LTR ERV1 100 478 0 208 338 25 0 chr13 4756889 4756969 -97116200 - MIR SINE MIR -100 162 81 27482 94 9 12 chr13 4757413 4762388 -97110781 - L1PA7 LINE L1 -2 6152 1196 27 0 0 0 chr13 4763290 4763317 -97109852 + AT_rich Low_complexity Low_complexity 1 27 0 276 124 52 10 chr13 4763329 4763426 -97109743 + (TA)n Simple_repeat Simple_repeat 2 102 0 280 299 17 8 chr13 4763449 4763566 -97109603 + (TA)n Simple_repeat Simple_repeat 2 119 0 291 267 92 17 chr13 4764808 4764928 -97108241 + MIR SINE MIR 48 176 -86 361 305 0 30 chr13 4765412 4765543 -97107626 + MIR SINE MIR 57 183 -79 328 290 28 9 chr13 4765627 4765734 -97107435 - MIR SINE MIR -46 216 108 22 21 0 62 chr13 4767187 4767208 -97105961 + AT_rich Low_complexity Low_complexity 1 22 -23 1636 162 49 18 chr13 4767208 4767492 -97105677 - AluJb SINE Alu -19 293 1 22 21 0 62 chr13 4767492 4767518 -97105651 + AT_rich Low_complexity Low_complexity 22 45 0 2264 67 16 19 chr13 4767498 4767810 -97105359 - AluY SINE Alu 0 311 1 2596 52 0 0 chr13 4768160 4768468 -97104701 + AluY SINE Alu 1 308 -3 459 281 77 73 chr13 4769564 4769838 -97103331 + MLT1J LTR MaLR 52 326 -185 247 214 38 0 chr13 4769948 4770079 -97103090 + (TA)n Simple_repeat Simple_repeat 2 137 0 662 318 34 0 chr13 4770271 4770507 -97102662 + MIR SINE MIR 19 262 0 234 0 0 0 chr13 4770536 4770562 -97102607 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1309 226 64 22 chr13 4771362 4771770 -97101399 + MLT1C LTR MaLR 42 466 -1 3356 256 59 34 chr13 4771771 4772960 -97100209 + MLT1C-int LTR MaLR 1 1219 -152 593 173 30 23 chr13 4773184 4773317 -97099852 + MLT1C-int LTR MaLR 1238 1371 0 262 238 60 12 chr13 4773317 4773401 -97099768 + MLT1C LTR MaLR 1 88 -379 654 234 43 59 chr13 4773434 4773806 -97099363 + L1ME2 LINE L1 4083 4448 -1698 * 2260 213 114 20 chr13 4773788 4774549 -97098620 + L1ME2 LINE L1 5317 6149 -15 2525 55 3 3 chr13 4775113 4775423 -97097746 - AluY SINE Alu -1 310 1 2200 45 59 10 chr13 4775433 4775721 -97097448 - AluY SINE Alu -9 302 1 272 200 27 13 chr13 4775817 4775892 -97097277 + L1M LINE L1 5322 5397 -903 2422 140 30 21 chr13 4777170 4777598 -97095571 + Tigger2a DNA MER2_type 1 432 -2 819 163 75 27 chr13 4777646 4777793 -97095376 + FRAM SINE Alu 4 157 -9 30 0 0 0 chr13 4779924 4779954 -97093215 + AT_rich Low_complexity Low_complexity 1 30 0 2514 50 0 0 chr13 4780211 4780514 -97092655 - AluY SINE Alu -8 303 1 21 57 0 0 chr13 4780711 4780746 -97092423 + AT_rich Low_complexity Low_complexity 1 35 0 312 91 0 0 chr13 4780820 4780864 -97092305 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 0 0 0 chr13 4781883 4781907 -97091262 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1050 33 8 0 chr13 4781926 4782048 -97091121 - AluY SINE Alu -188 123 1 718 68 4 2 chr13 4782269 4782519 -97090650 + AluY SINE Alu 1 307 -4 1714 229 106 8 chr13 4782690 4783210 -97089959 - MER90 LTR ERV1 -4 571 1 1976 129 0 10 chr13 4784121 4784415 -97088754 - AluSg SINE Alu -19 291 1 643 89 68 0 chr13 4784810 4785144 -97088025 + (TA)n Simple_repeat Simple_repeat 1 356 0 25 0 0 0 chr13 4785152 4785177 -97087992 + AT_rich Low_complexity Low_complexity 1 25 0 321 207 0 0 chr13 4785314 4785401 -97087768 + (CCA)n Simple_repeat Simple_repeat 3 89 0 564 241 0 0 chr13 4785422 4785596 -97087573 + (CCA)n Simple_repeat Simple_repeat 3 176 0 639 178 18 12 chr13 4785632 4785801 -97087368 + (CACCAT)n Simple_repeat Simple_repeat 1 170 0 853 300 104 34 chr13 4786351 4786952 -97086217 - MER115 DNA AcHobo -9 684 11 2495 108 17 120 chr13 4786957 4787405 -97085764 + LTR12 LTR ERV1 1 387 -327 1958 144 0 3 chr13 4787405 4787703 -97085466 + AluY SINE Alu 1 297 -14 2495 108 17 120 chr13 4787703 4787789 -97085380 + LTR12 LTR ERV1 387 480 -234 26 30 0 0 chr13 4787906 4787939 -97085230 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr13 4787988 4788019 -97085150 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr13 4788333 4788373 -97084796 + AT_rich Low_complexity Low_complexity 1 40 0 2402 57 7 13 chr13 4789400 4789699 -97083470 + AluY SINE Alu 1 297 -14 6757 53 21 0 chr13 4789901 4790114 -97083055 - L1PA7 LINE L1 -3 6151 5944 2035 68 0 19 chr13 4790114 4790378 -97082791 - AluY SINE Alu -15 296 38 6757 53 21 0 chr13 4790378 4791224 -97081945 - L1PA7 LINE L1 -210 5944 5107 653 39 39 10 chr13 4791224 4791326 -97081843 + L1P LINE L1 4617 4721 -1425 * 2047 240 77 47 chr13 4791321 4792828 -97080341 + L1ME2 LINE L1 4214 5784 -380 686 144 38 8 chr13 4792854 4793000 -97080169 - L1MD3 LINE L1 0 7995 7632 828 219 259 77 chr13 4793003 4793533 -97079636 + MER51A LTR ERV1 1 626 -8 2188 188 68 10 chr13 4793558 4794058 -97079111 - L1MC3 LINE L1 -157 7628 7100 986 212 92 15 chr13 4794111 4794436 -97078733 + L1ME2 LINE L1 5807 6156 -8 184 340 170 0 chr13 4795708 4795808 -97077361 - L2 LINE L2 -2 3270 3154 309 135 0 0 chr13 4796782 4796834 -97076335 + (CA)n Simple_repeat Simple_repeat 2 53 0 2409 69 0 0 chr13 4797444 4797750 -97075419 + AluY SINE Alu 1 306 -5 1415 271 19 60 chr13 4797750 4798506 -97074663 - L1ME3A LINE L1 -192 6238 5514 373 335 101 8 chr13 4798519 4798767 -97074402 - L1ME3A LINE L1 -905 5501 5231 307 284 142 24 chr13 4798970 4799139 -97074030 - L1ME3A LINE L1 -1313 5093 4905 651 195 84 39 chr13 4799147 4799301 -97073868 + FRAM SINE Alu 1 158 -18 341 264 49 68 chr13 4799304 4799467 -97073702 - L1ME3A LINE L1 -1511 4895 4736 23 54 0 0 chr13 4799502 4799539 -97073630 + AT_rich Low_complexity Low_complexity 1 37 0 338 194 94 70 chr13 4799727 4799964 -97073205 - L1MEc LINE L1 -3882 2524 2322 2506 151 26 16 chr13 4799978 4800482 -97072687 - L1MA8 LINE L1 0 6291 5783 21 36 0 0 chr13 4800636 4800664 -97072505 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr13 4800790 4800833 -97072336 + AT_rich Low_complexity Low_complexity 1 43 0 478 300 66 33 chr13 4800918 4801161 -97072008 - L1MEc LINE L1 -4989 1420 1170 205 135 39 0 chr13 4802517 4802569 -97070600 + (CGG)n Simple_repeat Simple_repeat 2 55 0 448 385 42 4 chr13 4803693 4803953 -97069216 + L3 LINE CR1 930 1199 -378 210 296 102 71 chr13 4804159 4804257 -97068912 + L3 LINE CR1 1472 1572 -5 1406 226 64 0 chr13 4804503 4804862 -97068307 - MLT1C-int LTR MaLR -989 382 1 1672 191 89 19 chr13 4804866 4805291 -97067878 - MLT1C LTR MaLR -7 460 6 573 248 47 0 chr13 4805743 4805892 -97067277 + MIR SINE MIR 81 236 -26 303 93 0 0 chr13 4806463 4806506 -97066663 + (TG)n Simple_repeat Simple_repeat 2 44 0 2844 25 0 0 chr13 4807368 4807708 -97065461 - AluYb8 SINE Alu 0 340 1 2252 130 24 3 chr13 4808138 4808516 -97064653 + L1PB3 LINE L1 5588 5973 -181 285 71 14 86 chr13 4808555 4808625 -97064544 + L1PB3 LINE L1 5956 6020 -134 2452 84 0 0 chr13 4812241 4812552 -97060617 + AluY SINE Alu 1 311 0 381 337 90 31 chr13 4812810 4813301 -97059868 - L2 LINE L2 -671 2643 2072 207 0 0 0 chr13 4814373 4814396 -97058773 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2221 88 7 0 chr13 4815949 4816243 -97056926 + AluY SINE Alu 1 296 -15 2549 51 0 3 chr13 4819222 4819534 -97053635 - AluY SINE Alu 0 311 1 1654 196 3 3 chr13 4820420 4820726 -97052443 + AluJo SINE Alu 1 306 -6 2994 209 22 57 chr13 4820727 4821232 -97051937 - L1MD1 LINE L1 -59 6183 5716 1785 170 0 21 chr13 4821232 4821540 -97051629 + AluJo SINE Alu 1 302 0 2994 209 22 57 chr13 4821540 4821883 -97051286 - L1MD1 LINE L1 -526 5716 5363 372 104 26 26 chr13 4821896 4821973 -97051196 + CT-rich Low_complexity Low_complexity 3 79 0 867 212 12 0 chr13 4821981 4822151 -97051018 - FRAM SINE Alu -4 172 1 1680 239 128 7 chr13 4822156 4822755 -97050414 - L1MD1 LINE L1 -821 5325 4654 886 177 0 6 chr13 4822753 4822928 -97050241 + L1MC/D LINE L1 5446 5619 -623 * 934 353 85 36 chr13 4823474 4824828 -97048341 + L2 LINE L2 748 2167 -1147 324 250 0 38 chr13 4824911 4824991 -97048178 + MER45A DNA AcHobo 1 77 -101 1502 135 23 0 chr13 4825044 4825304 -97047865 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr13 4825305 4825373 -97047796 + MER45A DNA AcHobo 100 168 -10 197 400 27 0 chr13 4825409 4825519 -97047650 + L2 LINE L2 2565 2677 -637 242 233 17 0 chr13 4825728 4825798 -97047371 - L1M1 LINE L1 -551 5752 5682 201 147 0 0 chr13 4825800 4825834 -97047335 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 285 283 67 2 chr13 4825867 4826110 -97047059 - L1ME LINE L1 -484 5637 5375 608 283 124 75 chr13 4826239 4827113 -97046056 - L1ME LINE L1 -873 5273 4358 308 289 59 17 chr13 4827311 4827600 -97045569 - L1ME LINE L1 -2166 3980 3682 266 195 79 0 chr13 4828079 4828243 -97044926 + (TA)n Simple_repeat Simple_repeat 2 178 0 479 154 10 58 chr13 4828313 4828417 -97044752 - AluJb SINE Alu -13 299 201 * 513 176 0 0 chr13 4828410 4828495 -97044674 - FRAM SINE Alu -73 103 19 1903 240 118 16 chr13 4829246 4830001 -97043168 + L1MC4a LINE L1 6977 7808 0 22 0 0 0 chr13 4831197 4831219 -97041950 + AT_rich Low_complexity Low_complexity 1 22 0 186 309 0 0 chr13 4831661 4831703 -97041466 - L2 LINE L2 -89 3183 3142 198 0 0 0 chr13 4831849 4831871 -97041298 + (A)n Simple_repeat Simple_repeat 1 22 0 481 249 53 24 chr13 4831871 4832040 -97041129 - MER45C DNA AcHobo -61 892 719 467 295 211 21 chr13 4832090 4832565 -97040604 - MER45C DNA AcHobo -351 602 38 232 315 92 23 chr13 4832598 4832728 -97040441 - MIR SINE MIR -110 152 14 656 47 0 0 chr13 4833802 4833888 -97039281 - AluY SINE Alu -10 301 216 477 202 16 47 chr13 4833907 4834036 -97039133 - HUERS-P2 LTR ERV1 -2963 125 1 3239 129 79 66 chr13 4834036 4834804 -97038365 - LTR1 LTR ERV1 0 785 8 2141 144 5 52 chr13 4835505 4835909 -97037260 - MLT1B LTR MaLR -5 385 1 789 224 17 29 chr13 4837712 4837953 -97035216 - L1MA9 LINE L1 -186 6126 5889 207 0 0 0 chr13 4838781 4838804 -97034365 + (CA)n Simple_repeat Simple_repeat 2 24 0 391 280 251 6 chr13 4839038 4839213 -97033956 - MIR SINE MIR -11 251 34 607 210 11 11 chr13 4840048 4840224 -97032945 + (ATGGTG)n Simple_repeat Simple_repeat 4 179 0 280 339 51 26 chr13 4840662 4840857 -97032312 - L2 LINE L2 -1 3312 3113 318 106 0 0 chr13 4840934 4840981 -97032188 + (TA)n Simple_repeat Simple_repeat 1 47 0 297 75 0 0 chr13 4840974 4841014 -97032155 + (CA)n Simple_repeat Simple_repeat 2 41 0 * 3092 63 0 0 chr13 4841014 4841412 -97031757 - MLT2A1 LTR ERVL -46 398 1 2132 108 3 7 chr13 4842420 4842717 -97030452 - AluSg SINE Alu -14 296 1 234 0 0 0 chr13 4844196 4844222 -97028947 + (CA)n Simple_repeat Simple_repeat 2 27 0 2352 87 3 10 chr13 4844250 4844562 -97028607 - AluY SINE Alu -1 310 1 332 238 109 30 chr13 4844883 4844984 -97028185 + MER110-int LTR ERV1 2748 2856 -1791 324 157 54 0 chr13 4845195 4845361 -97027808 + (TA)n Simple_repeat Simple_repeat 1 175 0 2230 106 0 3 chr13 4845606 4845899 -97027270 - AluY SINE Alu -19 292 1 2303 93 0 3 chr13 4846017 4846318 -97026851 - AluY SINE Alu -11 300 1 23 0 0 0 chr13 4846410 4846433 -97026736 + AT_rich Low_complexity Low_complexity 1 23 0 559 272 146 7 chr13 4846434 4846668 -97026501 - MIR SINE MIR -21 241 3 778 161 13 7 chr13 4846701 4846850 -97026319 + MER58B DNA MER1_type 177 326 -15 2314 50 7 27 chr13 4847186 4847486 -97025683 + AluY SINE Alu 1 294 -17 199 41 102 0 chr13 4847690 4847739 -97025430 + (CCTG)n Simple_repeat Simple_repeat 1 54 0 2467 66 0 0 chr13 4847911 4848213 -97024956 + AluY SINE Alu 1 302 -9 315 0 0 0 chr13 4849387 4849422 -97023747 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 26 0 26 chr13 4849528 4849540 -97023629 + AT_rich Low_complexity Low_complexity 1 12 -26 4811 90 20 23 chr13 4849540 4849896 -97023273 + L1PB1 LINE L1 5417 5772 -379 387 0 0 0 chr13 4849896 4849939 -97023230 + (CA)n Simple_repeat Simple_repeat 2 44 0 4811 90 20 23 chr13 4849939 4849957 -97023212 + L1PB1 LINE L1 5772 5789 -362 1635 100 4 4 chr13 4849957 4850186 -97022983 + AluY SINE Alu 67 295 -16 4811 90 20 23 chr13 4850186 4850361 -97022808 + L1PB1 LINE L1 5789 5963 -188 3666 107 99 31 chr13 4850361 4850954 -97022215 - LTR12 LTR ERV1 0 688 46 2395 76 3 0 chr13 4850954 4851256 -97021913 + AluY SINE Alu 1 303 -8 3666 107 99 31 chr13 4851256 4851306 -97021863 - LTR12 LTR ERV1 -642 46 1 4811 90 20 23 chr13 4851306 4851489 -97021680 + L1PB1 LINE L1 5963 6149 -2 21 26 0 26 chr13 4851489 4851515 -97021654 + AT_rich Low_complexity Low_complexity 12 38 0 23 54 0 0 chr13 4851799 4851836 -97021333 + AT_rich Low_complexity Low_complexity 1 37 0 1786 139 7 53 chr13 4853271 4853573 -97019596 + AluSx SINE Alu 1 288 -24 287 299 58 73 chr13 4854126 4854263 -97018906 + L2 LINE L2 3138 3272 0 1005 149 56 5 chr13 4855314 4855528 -97017641 + L1MC3 LINE L1 7470 7694 -91 * 1723 164 138 61 chr13 4855523 4855721 -97017448 + L1MA6 LINE L1 5754 5935 -365 1800 155 14 0 chr13 4855721 4856031 -97017138 + AluSx SINE Alu 1 314 0 1723 164 138 61 chr13 4856031 4856335 -97016834 + L1MA6 LINE L1 5935 6298 -2 554 138 21 0 chr13 4856332 4856426 -97016743 + L1MC3 LINE L1 7677 7772 -13 * 23 0 0 0 chr13 4857960 4857983 -97015186 + AT_rich Low_complexity Low_complexity 1 23 0 269 334 141 10 chr13 4859223 4859432 -97013737 + MIR SINE MIR 18 248 -14 1673 167 37 14 chr13 4859653 4860007 -97013162 + L1MA4 LINE L1 5939 6300 0 924 269 48 85 chr13 4860190 4860674 -97012495 - MLT1K LTR MaLR 0 588 123 220 342 89 0 chr13 4861445 4861524 -97011645 + MIR SINE MIR 26 111 -97 4569 167 26 2 chr13 4862041 4863151 -97010018 + L1MA4A LINE L1 4431 5564 -736 3186 141 94 0 chr13 4863152 4863757 -97009412 + L1MA4A LINE L1 5639 6300 -3 200 211 18 18 chr13 4863864 4863921 -97009248 + (TG)n Simple_repeat Simple_repeat 2 58 0 3924 137 31 3 chr13 4863965 4864664 -97008505 + L1MA6 LINE L1 5582 6300 0 607 271 49 31 chr13 4864738 4864963 -97008206 + MIR SINE MIR 34 262 0 2133 166 64 5 chr13 4865060 4865464 -97007705 + MSTA LTR MaLR 1 428 0 279 183 28 14 chr13 4865552 4865623 -97007546 - Tigger5 DNA MER2_type -1 2322 2251 2458 55 13 0 chr13 4865847 4866154 -97007015 + AluY SINE Alu 1 311 0 21 36 0 0 chr13 4866154 4866182 -97006987 + AT_rich Low_complexity Low_complexity 1 28 0 244 61 0 41 chr13 4866553 4866602 -97006567 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3043 121 116 82 chr13 4866717 4867476 -97005693 - LTR1 LTR ERV1 0 785 1 23 0 0 0 chr13 4867741 4867764 -97005405 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr13 4868160 4868181 -97004988 + (TA)n Simple_repeat Simple_repeat 2 22 0 2326 96 3 16 chr13 4868184 4868498 -97004671 - AluY SINE Alu -1 310 1 1996 111 11 0 chr13 4868790 4869061 -97004108 - AluSp SINE Alu -16 297 24 2532 118 8 0 chr13 4870749 4871121 -97002048 + THE1C LTR MaLR 1 375 0 236 204 0 0 chr13 4871613 4871662 -97001507 + A-rich Low_complexity Low_complexity 1 49 0 2500 62 7 0 chr13 4873173 4873482 -96999687 - AluY SINE Alu 0 311 1 314 61 20 0 chr13 4873484 4873533 -96999636 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 585 253 22 11 chr13 4873607 4873785 -96999384 - HAL1 LINE L1 -705 1802 1623 204 347 14 20 chr13 4874310 4874457 -96998712 + CT-rich Low_complexity Low_complexity 3 148 0 320 267 108 23 chr13 4874657 4874833 -96998336 - HAL1 LINE L1 -886 1621 1431 2192 84 3 10 chr13 4874868 4875164 -96998005 - AluY SINE Alu -17 294 1 258 274 0 0 chr13 4875175 4875226 -96997943 + MIR SINE MIR 73 123 -85 1974 115 36 20 chr13 4875255 4875559 -96997610 - AluSq SINE Alu -4 309 1 190 302 19 0 chr13 4875610 4875663 -96997506 + L2 LINE L2 2983 3036 -236 2167 140 62 12 chr13 4875682 4876088 -96997081 + MSTB LTR MaLR 1 426 0 2329 105 0 0 chr13 4876107 4876411 -96996758 - AluSg1 SINE Alu -5 304 1 483 307 34 11 chr13 4876830 4877006 -96996163 + MIR SINE MIR 14 193 -69 424 141 45 34 chr13 4878052 4878229 -96994940 + (TA)n Simple_repeat Simple_repeat 1 179 0 6143 149 59 19 chr13 4878284 4879468 -96993701 + Tigger3b DNA MER2_type 1 1231 0 22 0 0 0 chr13 4880350 4880372 -96992797 + AT_rich Low_complexity Low_complexity 1 22 0 643 260 41 6 chr13 4881300 4881469 -96991700 - MIR SINE MIR -14 248 74 2253 90 17 0 chr13 4881479 4881778 -96991391 + AluY SINE Alu 1 304 -7 780 202 85 4 chr13 4881778 4882050 -96991119 + L1MB3 LINE L1 3041 3334 -2812 1996 92 46 4 chr13 4882061 4882342 -96990827 + AluSc SINE Alu 1 293 -16 4324 200 42 14 chr13 4882343 4884148 -96989021 + L1MB3 LINE L1 4327 6181 -2 306 343 126 0 chr13 4884489 4884664 -96988505 - MIR SINE MIR -17 245 49 2442 59 3 3 chr13 4884697 4885003 -96988166 - AluY SINE Alu -5 306 1 435 38 0 0 chr13 4885479 4885532 -96987637 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 35 0 0 chr13 4885924 4885953 -96987216 + AT_rich Low_complexity Low_complexity 1 29 0 1996 141 0 10 chr13 4887127 4887440 -96985729 - AluSx SINE Alu -2 310 1 197 116 0 23 chr13 4888150 4888193 -96984976 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 24 53 0 0 chr13 4888325 4888363 -96984806 + AT_rich Low_complexity Low_complexity 1 38 0 470 314 100 32 chr13 4888651 4888722 -96984447 - L1ME4a LINE L1 -209 5912 5847 2179 109 7 0 chr13 4888722 4889016 -96984153 - AluSp SINE Alu -7 306 11 470 314 100 32 chr13 4889016 4889285 -96983884 - L1ME4a LINE L1 -274 5847 5549 227 255 0 0 chr13 4889829 4889876 -96983293 + (CA)n Simple_repeat Simple_repeat 1 47 0 24 85 0 0 chr13 4890821 4890880 -96982289 + AT_rich Low_complexity Low_complexity 1 59 0 355 326 68 7 chr13 4890891 4891038 -96982131 + MIR SINE MIR 21 176 -86 374 293 95 48 chr13 4891587 4892007 -96981162 - L1M4 LINE L1 -2955 3191 2752 479 194 40 49 chr13 4892404 4892443 -96980726 - L1ME1 LINE L1 -5 6161 6123 2507 41 0 3 chr13 4892443 4892737 -96980432 + AluY SINE Alu 1 293 -18 479 194 40 49 chr13 4892737 4892892 -96980277 - L1ME1 LINE L1 -43 6123 5965 336 232 37 0 chr13 4893049 4893131 -96980038 + L1MC1 LINE L1 5997 6081 -252 330 258 6 50 chr13 4893134 4893293 -96979876 - MER52A LTR ERV1 -3 1752 1601 623 206 21 185 chr13 4893293 4893886 -96979283 - MER52A LTR ERV1 -141 495 283 1704 169 11 0 chr13 4894111 4894389 -96978780 - AluJo SINE Alu -31 281 1 235 299 93 31 chr13 4894636 4894733 -96978436 + L2 LINE L2 3162 3264 -8 363 302 76 6 chr13 4894850 4895022 -96978147 + MIR SINE MIR 21 204 -58 989 283 187 38 chr13 4897420 4898445 -96974724 - L2 LINE L2 -52 3261 1968 2151 130 3 13 chr13 4899850 4900165 -96973004 - AluSq SINE Alu -1 312 1 207 139 0 0 chr13 4900577 4900613 -96972556 + (TG)n Simple_repeat Simple_repeat 2 37 0 348 255 89 25 chr13 4900847 4901004 -96972165 - MLT1D LTR MaLR -262 243 77 4246 217 28 28 chr13 4901039 4902024 -96971145 + L1MC2 LINE L1 4378 5361 -983 2629 90 19 3 chr13 4902024 4902391 -96970778 + THE1C LTR MaLR 1 373 -2 4246 217 28 28 chr13 4902391 4903247 -96969922 + L1MC2 LINE L1 5361 6226 -118 321 26 0 0 chr13 4903247 4903285 -96969884 + (TG)n Simple_repeat Simple_repeat 1 38 0 4246 217 28 28 chr13 4903285 4903405 -96969764 + L1MC2 LINE L1 6226 6344 0 3054 171 35 62 chr13 4903381 4903784 -96969385 + L1MB7 LINE L1 5297 5709 -475 * 2018 91 3 24 chr13 4903784 4904098 -96969071 + AluY SINE Alu 1 308 0 3054 171 35 62 chr13 4904098 4904550 -96968619 + L1MB7 LINE L1 5709 6130 -54 2271 72 21 0 chr13 4904651 4904942 -96968227 - AluY SINE Alu -14 297 1 2317 98 0 25 chr13 4905486 4905801 -96967368 - AluY SINE Alu -4 307 1 3649 171 17 65 chr13 4905845 4906828 -96966341 + L1MA8 LINE L1 4857 5760 -531 2322 107 0 0 chr13 4906828 4907137 -96966032 + AluSg SINE Alu 1 309 -1 3649 171 17 65 chr13 4907137 4907450 -96965719 + L1MA8 LINE L1 5760 6086 -205 210 375 55 34 chr13 4907604 4907841 -96965328 - L2 LINE L2 -661 2653 2412 2175 111 7 0 chr13 4907964 4908261 -96964908 + AluSg SINE Alu 1 299 -11 1603 174 7 43 chr13 4908580 4908884 -96964285 - AluJb SINE Alu -15 297 5 2511 73 0 0 chr13 4908907 4909208 -96963961 - AluY SINE Alu -4 307 7 678 84 0 0 chr13 4909549 4909644 -96963525 - AluY SINE Alu 0 311 217 23 33 0 0 chr13 4909929 4909959 -96963210 + AT_rich Low_complexity Low_complexity 1 30 0 1550 195 25 42 chr13 4913123 4913554 -96959615 - L1MB7 LINE L1 -9 6175 5752 1169 248 26 0 chr13 4913558 4913869 -96959300 + L1MB7 LINE L1 5404 5722 -456 238 302 10 21 chr13 4914789 4914885 -96958284 + L2 LINE L2 3177 3271 -1 266 328 136 39 chr13 4914943 4915501 -96957668 - L2 LINE L2 -573 2741 2130 1290 218 120 19 chr13 4915592 4916009 -96957160 + MLT1C LTR MaLR 3 461 -6 46 45 0 0 chr13 4917720 4917787 -96955382 + AT_rich Low_complexity Low_complexity 1 67 0 2160 157 0 10 chr13 4918409 4918722 -96954447 - AluSx SINE Alu -2 310 1 180 0 0 0 chr13 4918800 4918820 -96954349 + (CA)n Simple_repeat Simple_repeat 1 20 0 26 23 0 23 chr13 4919143 4919166 -96954003 + AT_rich Low_complexity Low_complexity 1 24 -19 2165 94 0 3 chr13 4919166 4919452 -96953717 + AluSg SINE Alu 1 285 -25 26 23 0 23 chr13 4919452 4919472 -96953697 + AT_rich Low_complexity Low_complexity 24 43 0 279 285 69 32 chr13 4920048 4920294 -96952875 - L1M4 LINE L1 -1995 4151 3897 228 35 0 0 chr13 4920367 4920396 -96952773 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 298 298 114 32 chr13 4920663 4920821 -96952348 + L2 LINE L2 3102 3272 0 610 287 36 24 chr13 4921120 4921454 -96951715 + L1MEd LINE L1 920 1257 -4862 352 316 94 33 chr13 4921545 4921757 -96951412 + L1MEd LINE L1 1437 1661 -4649 1538 95 0 25 chr13 4921888 4922131 -96951038 + L1MC/D LINE L1 5321 5557 -787 325 298 12 0 chr13 4922231 4922315 -96950854 - Tigger7 DNA MER2_type -318 232 148 4468 141 47 44 chr13 4922356 4922449 -96950720 - L1MA7 LINE L1 -60 6231 6140 3352 136 7 31 chr13 4922449 4923037 -96950132 + L1PA16 LINE L1 5584 6157 -9 4468 141 47 44 chr13 4923037 4923899 -96949270 - L1MA7 LINE L1 -151 6140 5273 2173 100 0 0 chr13 4926604 4926884 -96946285 + AluSc SINE Alu 1 280 -29 2409 82 0 6 chr13 4926920 4927235 -96945934 + AluSq SINE Alu 1 313 0 199 324 28 0 chr13 4927255 4927326 -96945843 + MIR SINE MIR 57 129 -133 302 358 7 7 chr13 4927771 4927922 -96945247 + LTR33 LTR ERVL 1 151 -370 197 197 16 0 chr13 4928155 4928216 -96944953 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 929 118 0 0 chr13 4928675 4928802 -96944367 - AluJb SINE Alu -16 296 170 733 107 0 9 chr13 4928918 4929030 -96944139 + LTR1 LTR ERV1 382 492 -293 1660 94 0 18 chr13 4929030 4929254 -96943915 - AluY SINE Alu -91 220 1 362 208 28 0 chr13 4929256 4929362 -96943807 + L1ME2 LINE L1 4611 4719 -1427 * 5057 144 42 22 chr13 4929338 4930564 -96942605 + L1MA8 LINE L1 5042 6290 -1 1780 244 47 43 chr13 4930596 4931672 -96941497 + L1ME2 LINE L1 4694 5781 -381 2315 100 0 25 chr13 4931672 4931851 -96941318 - AluSq SINE Alu -2 311 142 2219 98 3 49 chr13 4931851 4932179 -96940990 - AluSp SINE Alu 0 313 1 2315 100 0 25 chr13 4932179 4932318 -96940851 - AluSq SINE Alu -171 142 1 1780 244 47 43 chr13 4932318 4932391 -96940778 + L1ME2 LINE L1 5781 5852 -310 290 311 40 13 chr13 4932412 4932563 -96940606 + L1ME2 LINE L1 5910 6064 -100 * 5386 211 92 52 chr13 4932558 4934213 -96938956 + L1PA13 LINE L1 5293 5438 -725 418 162 0 0 chr13 4934213 4934281 -96938888 + MLT1A1 LTR MaLR 248 315 -50 5386 211 92 52 chr13 4934281 4935036 -96938133 + L1PA13 LINE L1 5438 6162 -1 253 270 40 0 chr13 4935042 4935168 -96938001 + (TA)n Simple_repeat Simple_repeat 1 131 0 189 0 0 0 chr13 4936034 4936055 -96937114 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 277 384 38 27 chr13 4936126 4936311 -96936858 - MIR SINE MIR -74 188 2 6800 114 7 9 chr13 4936494 4937465 -96935704 - LTR5 LTR ERVK 0 969 1 493 291 53 68 chr13 4937782 4937878 -96935291 - MIR SINE MIR 0 262 166 2225 109 0 26 chr13 4937878 4938189 -96934980 - AluSc SINE Alu -6 303 1 493 291 53 68 chr13 4938189 4938357 -96934812 - MIR SINE MIR -96 166 2 2060 120 21 3 chr13 4938810 4939101 -96934068 - AluSq SINE Alu -17 296 1 2064 156 0 0 chr13 4939516 4939818 -96933351 + AluSx SINE Alu 1 302 -10 2449 83 0 0 chr13 4940383 4940683 -96932486 - AluY SINE Alu -11 300 1 2135 106 0 0 chr13 4941235 4941552 -96931617 - AluY SINE Alu 0 317 1 4634 170 14 21 chr13 4941563 4942282 -96930887 - L1MA6 LINE L1 -5 6295 5583 1673 94 0 45 chr13 4942282 4942526 -96930643 - AluSc SINE Alu -5 304 72 4634 170 14 21 chr13 4942526 4942737 -96930432 - L1MA6 LINE L1 -717 5583 5372 247 224 0 0 chr13 4942739 4942797 -96930372 + L1 LINE L1 5091 5148 -998 1495 221 97 68 chr13 4942933 4943040 -96930129 - MLT1E1 LTR MaLR -59 595 493 1948 138 3 42 chr13 4943040 4943352 -96929817 - AluSx SINE Alu -12 300 1 1495 221 97 68 chr13 4943352 4943413 -96929756 - MLT1E1 LTR MaLR -161 493 435 228 35 0 0 chr13 4943413 4943442 -96929727 + (TG)n Simple_repeat Simple_repeat 1 29 0 1495 221 97 68 chr13 4943442 4943850 -96929319 - MLT1E1 LTR MaLR -219 435 1 2447 64 18 12 chr13 4944061 4944391 -96928778 - L1PA8 LINE L1 0 6172 5841 2211 95 0 14 chr13 4944402 4944696 -96928473 - AluSx SINE Alu -18 294 5 403 338 35 25 chr13 4945023 4945337 -96927832 + L1MB5 LINE L1 39 355 -6029 3119 238 32 44 chr13 4945458 4946756 -96926413 + L1MB5 LINE L1 554 1842 -4542 827 137 8 23 chr13 4946805 4946936 -96926233 + AluSg/x SINE Alu 161 289 -20 4356 237 55 68 chr13 4946936 4948881 -96924288 + L1MB5 LINE L1 3279 5247 -1163 2238 101 0 7 chr13 4948881 4949179 -96923990 + AluY SINE Alu 1 296 -15 4356 237 55 68 chr13 4949179 4949592 -96923577 + L1MB5 LINE L1 5247 5664 -746 2029 147 0 10 chr13 4949592 4949904 -96923265 - AluSq SINE Alu -4 309 1 4356 237 55 68 chr13 4949904 4949994 -96923175 + L1MB5 LINE L1 5664 5754 -656 1454 162 3 81 chr13 4949994 4950278 -96922891 + AluJo SINE Alu 15 276 -36 4356 237 55 68 chr13 4950278 4950989 -96922180 + L1MB5 LINE L1 5754 6402 -8 341 306 91 30 chr13 4951061 4951260 -96921909 + MIR SINE MIR 46 256 -6 1681 181 18 15 chr13 4951787 4952129 -96921040 + MER2 DNA MER2_type 1 343 -1 1317 113 16 0 chr13 4952230 4952416 -96920753 - AluSp SINE Alu -124 189 1 2183 82 0 0 chr13 4952537 4952818 -96920351 - AluSq SINE Alu -32 281 1 629 302 57 41 chr13 4953020 4953480 -96919689 + MER21-int LTR ERV1 3630 4096 -95 247 362 32 0 chr13 4954646 4954740 -96918429 + L2 LINE L2 3212 3308 -5 24 53 0 0 chr13 4955498 4955536 -96917633 + AT_rich Low_complexity Low_complexity 1 38 0 33 66 0 0 chr13 4955557 4955618 -96917551 + AT_rich Low_complexity Low_complexity 1 61 0 2324 72 3 0 chr13 4956516 4956807 -96916362 - AluY SINE Alu -19 292 1 957 157 0 0 chr13 4960614 4960767 -96912402 + MSTC LTR MaLR 1 153 -275 1640 164 4 4 chr13 4960797 4961059 -96912110 + AluJo SINE Alu 29 290 -22 1521 147 27 31 chr13 4961063 4961356 -96911813 + MSTC LTR MaLR 137 428 0 2368 67 0 7 chr13 4961968 4962266 -96910903 + AluY SINE Alu 1 296 -15 2117 109 3 0 chr13 4962275 4962558 -96910611 + AluSg SINE Alu 7 290 -20 22 0 0 0 chr13 4963400 4963422 -96909747 + AT_rich Low_complexity Low_complexity 1 22 0 369 192 92 23 chr13 4963451 4963581 -96909588 - L1MC5 LINE L1 -39 7922 7784 22 35 0 0 chr13 4963924 4963953 -96909216 + AT_rich Low_complexity Low_complexity 1 29 0 2178 71 0 3 chr13 4963953 4964272 -96908897 + AluY SINE Alu 1 318 0 2237 89 0 32 chr13 4964690 4965004 -96908165 + AluY SINE Alu 1 304 -7 2606 48 0 7 chr13 4965459 4965769 -96907400 - AluY SINE Alu -1 310 3 1064 250 113 46 chr13 4967170 4967605 -96905564 - L1ME3A LINE L1 -9 6161 5664 2534 68 0 6 chr13 4967605 4967916 -96905253 - AluY SINE Alu -2 309 1 1064 250 113 46 chr13 4967916 4968155 -96905014 - L1ME3A LINE L1 -506 5664 5442 338 251 145 51 chr13 4968331 4968563 -96904606 + MLT1G3 LTR MaLR 156 447 -108 870 251 163 44 chr13 4968723 4969195 -96903974 - MLT1G LTR MaLR 0 590 30 1077 155 0 0 chr13 4969448 4969609 -96903560 - AluSg/x SINE Alu -15 295 135 581 265 105 43 chr13 4969620 4969993 -96903176 - L1ME3A LINE L1 -1036 5110 4715 255 61 0 0 chr13 4970004 4970037 -96903132 + (CA)n Simple_repeat Simple_repeat 2 34 0 863 245 88 58 chr13 4970037 4970592 -96902577 - L1ME3A LINE L1 -1531 4615 4044 7308 53 7 47 chr13 4970770 4971759 -96901410 - SVA Other Other -3 1383 434 261 0 0 0 chr13 4971876 4971905 -96901264 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 364 304 0 40 chr13 4972073 4972181 -96900988 + L2 LINE L2 3194 3298 -15 2247 100 0 3 chr13 4972181 4972482 -96900687 + AluY SINE Alu 1 300 -11 364 304 0 40 chr13 4972482 4972498 -96900671 + L2 LINE L2 3298 3313 0 692 11 11 0 chr13 4973723 4973810 -96899359 - L1PA3 LINE L1 0 6155 6068 1906 182 11 3 chr13 4974102 4974471 -96898698 - L1MB1 LINE L1 -103 6065 5694 272 172 10 91 chr13 4974477 4974576 -96898593 + L1MB1 LINE L1 5587 5677 -494 308 305 76 8 chr13 4974585 4974703 -96898466 - MIR SINE MIR -122 140 15 23 0 0 0 chr13 4974944 4974967 -96898202 + AT_rich Low_complexity Low_complexity 1 23 0 2456 70 0 0 chr13 4975386 4975687 -96897482 + AluY SINE Alu 1 301 -10 2964 200 16 8 chr13 4976552 4977260 -96895909 - L1MD2 LINE L1 -471 5888 5177 345 314 86 69 chr13 4977269 4977514 -96895655 + L1ME3 LINE L1 5618 5866 -296 359 31 31 155 chr13 4977530 4977691 -96895478 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 336 48 0 0 chr13 4978130 4978172 -96894997 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2462 80 3 16 chr13 4978466 4978780 -96894389 - AluY SINE Alu -1 310 1 2435 122 11 6 chr13 4979292 4979654 -96893515 + THE1B LTR MaLR 1 364 0 11102 95 33 2 chr13 4979654 4981186 -96891983 + THE1B-int LTR MaLR 1 1580 0 2542 112 3 8 chr13 4981186 4981552 -96891617 + THE1B LTR MaLR 1 364 0 649 158 73 43 chr13 4981850 4982014 -96891155 - MLT1E LTR MaLR -63 530 362 * 1507 199 13 10 chr13 4982006 4982317 -96890852 + MLT1A2 LTR MaLR 63 374 0 291 182 23 11 chr13 4982523 4982611 -96890558 + CT-rich Low_complexity Low_complexity 3 91 0 2478 68 3 0 chr13 4983185 4983493 -96889676 + AluY SINE Alu 2 310 -1 950 182 152 20 chr13 4983887 4984183 -96888986 + LTR54B LTR ERV1 3 337 -161 802 223 107 93 chr13 4984372 4984812 -96888357 - MER4C LTR ERV1 0 465 20 297 0 0 0 chr13 4984815 4984848 -96888321 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2009 108 7 0 chr13 4984848 4985126 -96888043 - AluSx SINE Alu -32 280 1 5873 145 45 91 chr13 4985127 4985528 -96887641 - LTR49-int LTR ERV1 -987 5344 4926 2424 69 0 7 chr13 4985528 4985834 -96887335 + AluY SINE Alu 1 304 -7 5873 145 45 91 chr13 4985834 4985877 -96887292 - LTR49-int LTR ERV1 -1405 4926 4883 2400 93 7 3 chr13 4985877 4986187 -96886982 + AluY SINE Alu 1 311 0 5873 145 45 91 chr13 4986187 4986284 -96886885 - LTR49-int LTR ERV1 -1448 4883 4783 2665 122 38 2 chr13 4986284 4986701 -96886468 - L1PA16 LINE L1 -9 6157 5726 5873 145 45 91 chr13 4986701 4987172 -96885997 - LTR49-int LTR ERV1 -1548 4783 4292 360 150 17 0 chr13 4987172 4987232 -96885937 + AluS SINE Alu 233 293 -7 5873 145 45 91 chr13 4987232 4987723 -96885446 - LTR49-int LTR ERV1 -2039 4292 3853 2216 112 13 0 chr13 4987723 4988026 -96885143 + AluSq SINE Alu 1 307 -6 5873 145 45 91 chr13 4988026 4988071 -96885098 - LTR49-int LTR ERV1 -2478 3853 3807 1201 99 17 28 chr13 4988071 4988252 -96884917 - 7SLRNA srpRNA srpRNA -9 311 133 2526 196 69 94 chr13 4988252 4989249 -96883920 - LTR49-int LTR ERV1 -1606 3274 2303 3883 30 17 0 chr13 4989252 4989725 -96883444 + LTR2B LTR ERV1 10 490 0 1136 227 42 73 chr13 4989725 4990285 -96882884 - LTR49-int LTR ERV1 -4263 3274 1580 462 222 26 98 chr13 4990254 4990407 -96882762 - LTR49-int LTR ERV1 -4146 2185 2044 * 1270 151 36 0 chr13 4990413 4990638 -96882531 + MER50 LTR ERV1 1 233 -501 2409 72 0 3 chr13 4990829 4991135 -96882034 - AluY SINE Alu -6 305 1 2192 222 62 22 chr13 4991135 4991780 -96881389 - Tigger6a DNA MER2_type -64 1019 349 2012 92 14 24 chr13 4991802 4992094 -96881075 - AluSx SINE Alu -23 289 1 180 0 0 0 chr13 4992275 4992295 -96880874 + (T)n Simple_repeat Simple_repeat 1 20 0 1183 107 0 0 chr13 4992318 4992477 -96880692 - AluSq SINE Alu -33 280 122 183 152 0 0 chr13 4992477 4992523 -96880646 + (TA)n Simple_repeat Simple_repeat 2 47 0 885 88 72 0 chr13 4992526 4992651 -96880518 - AluSg SINE Alu -176 134 1 240 226 0 0 chr13 4993544 4993606 -96879563 + T-rich Low_complexity Low_complexity 1 62 0 318 286 188 45 chr13 4993609 4993763 -96879406 - MIR3 SINE MIR -13 195 20 26 30 0 0 chr13 4995252 4995285 -96877884 + AT_rich Low_complexity Low_complexity 1 33 0 2126 78 34 3 chr13 4995727 4996020 -96877149 - AluY SINE Alu -9 302 1 1122 138 16 0 chr13 4996202 4996391 -96876778 + MER4B LTR ERV1 400 591 -19 786 85 53 116 chr13 4996391 4996580 -96876589 + PABL_A-int LTR ERV1 629 805 -4210 * 3619 73 93 41 chr13 4996577 4996776 -96876393 + PABL_A-int LTR ERV1 1803 1990 -4608 1985 124 22 38 chr13 4996776 4997091 -96876078 - AluSp SINE Alu -3 310 1 3619 73 93 41 chr13 4997091 4997550 -96875619 + PABL_A-int LTR ERV1 1990 2495 -4103 1064 145 90 10 chr13 4997550 4997750 -96875419 - LTR8 LTR ERV1 -434 257 42 910 83 8 0 chr13 4997750 4997871 -96875298 - AluSp SINE Alu -16 297 176 3703 60 43 0 chr13 4997871 4998341 -96874828 + LTR2B LTR ERV1 1 490 0 5360 92 58 19 chr13 4998341 4999200 -96873969 + Harlequin LTR ERV1 1 893 -6003 * 6257 68 46 0 chr13 4999195 5000153 -96873016 + Harlequin LTR ERV1 1572 2573 -4323 23074 112 11 8 chr13 5000154 5003686 -96869483 + Harlequin LTR ERV1 3353 6892 -4 3707 55 45 0 chr13 5003689 5004158 -96869011 + LTR2B LTR ERV1 1 490 0 352 105 35 0 chr13 5004158 5004215 -96868954 - AluSp SINE Alu -124 179 121 862 132 0 22 chr13 5004215 5004351 -96868818 - AluJo/FLAM SINE Alu -169 133 1 2043 83 0 90 chr13 5004351 5004397 -96868772 + MER4A-int LTR ERV1 2684 2733 -3865 2538 77 0 3 chr13 5004397 5004709 -96868460 - AluY SINE Alu 0 311 1 2043 83 0 90 chr13 5004709 5005094 -96868075 + MER4A-int LTR ERV1 2733 3076 -3522 8458 104 60 37 chr13 5005274 5005367 -96867802 + MER4A-int LTR ERV1 4953 5042 -1556 2058 94 7 7 chr13 5005367 5005653 -96867516 + AluY SINE Alu 1 286 -25 8458 104 60 37 chr13 5005653 5007169 -96866000 + MER4A-int LTR ERV1 5042 6598 0 250 111 22 22 chr13 5007198 5007243 -96865926 + MER4A LTR ERV1 54 98 -566 1719 120 8 46 chr13 5007243 5007601 -96865568 + MER4A LTR ERV1 262 664 0 * 2741 170 8 40 chr13 5007601 5008113 -96865056 + MER50 LTR ERV1 228 722 -12 231 203 0 0 chr13 5008184 5008243 -96864926 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 * 432 244 43 43 chr13 5008239 5008385 -96864784 - MER41-int LTR ERV1 -3703 2243 2121 2584 113 86 60 chr13 5008482 5008935 -96864234 + MER4C LTR ERV1 1 465 0 317 185 62 0 chr13 5008960 5009025 -96864144 + LTR9 LTR ERV1 544 612 0 6689 157 114 75 chr13 5009025 5009790 -96863379 + LTR9-int LTR ERV1 283 1017 -5581 321 26 0 0 chr13 5009790 5009828 -96863341 + (TG)n Simple_repeat Simple_repeat 2 39 0 6689 157 114 75 chr13 5009828 5010621 -96862548 + LTR9-int LTR ERV1 1017 1995 -4603 2072 142 0 0 chr13 5010621 5010916 -96862253 + AluSx SINE Alu 1 295 -17 6689 157 114 75 chr13 5010916 5011427 -96861742 + LTR9-int LTR ERV1 1995 2485 -4113 416 45 80 0 chr13 5011590 5011678 -96861491 + GA-rich Low_complexity Low_complexity 2 96 0 4085 147 82 57 chr13 5012599 5012632 -96860537 + LTR9-int LTR ERV1 2924 2955 -3643 2231 99 3 0 chr13 5012632 5012925 -96860244 + AluY SINE Alu 1 294 -17 4085 147 82 57 chr13 5012925 5013925 -96859244 + LTR9-int LTR ERV1 2955 3983 -2615 4735 119 122 46 chr13 5013927 5015367 -96857802 - pTR5 LTR ERV1 0 2438 743 6853 139 56 50 chr13 5015367 5016754 -96856415 + LTR9-int LTR ERV1 3979 5357 -1241 408 20 0 0 chr13 5016754 5016803 -96856366 + (TA)n Simple_repeat Simple_repeat 2 50 0 1936 151 0 0 chr13 5016808 5017092 -96856077 - AluSx SINE Alu -28 284 1 6853 139 56 50 chr13 5017092 5017129 -96856040 + LTR9-int LTR ERV1 5360 5417 -1181 829 179 155 29 chr13 5017137 5017344 -96855825 + MER4C LTR ERV1 1 233 -232 3589 112 47 4 chr13 5017359 5017849 -96855320 + MER9 LTR ERVK 1 511 0 1051 62 0 0 chr13 5017849 5017979 -96855190 + HERVK9 LTR ERVK 1 130 -5786 700 255 60 39 chr13 5017991 5018367 -96854802 + MER4C LTR ERV1 141 465 0 643 167 35 21 chr13 5018452 5018596 -96854573 + MER4C-int LTR ERV1 109 254 -6344 227 213 21 0 chr13 5018781 5018828 -96854341 + LTR49 LTR ERV1 261 308 -287 554 174 84 58 chr13 5018850 5019005 -96854164 + MER4C-int LTR ERV1 995 1153 -5178 2808 223 30 15 chr13 5019276 5021137 -96852032 + L1MB8 LINE L1 2865 6169 -9 186 43 0 0 chr13 5021145 5021168 -96852001 + (CA)n Simple_repeat Simple_repeat 1 23 0 3260 271 32 36 chr13 5021176 5022267 -96850902 - MER110-int LTR ERV1 -1547 3100 2014 2221 189 62 77 chr13 5022283 5022385 -96850784 - MLT1A1-int LTR MaLR -1180 555 453 2422 100 3 0 chr13 5022385 5022695 -96850474 + AluSx SINE Alu 1 311 -1 2221 189 62 77 chr13 5022695 5023154 -96850015 - MLT1A1-int LTR MaLR -1282 453 2 1091 188 139 102 chr13 5023155 5023507 -96849662 - MLT1A1 LTR MaLR 0 365 1 2453 94 0 0 chr13 5024100 5024409 -96848760 - AluSq SINE Alu -4 309 1 456 333 76 54 chr13 5024473 5024653 -96848516 - MER110-int LTR ERV1 -4121 526 351 1628 118 165 4 chr13 5024653 5024908 -96848261 + AluSx SINE Alu 1 296 -16 456 333 76 54 chr13 5024908 5025018 -96848151 - MER110-int LTR ERV1 -4296 351 245 2305 94 0 3 chr13 5025018 5025315 -96847854 - AluSc SINE Alu -13 296 1 456 333 76 54 chr13 5025315 5025431 -96847738 - MER110-int LTR ERV1 -4402 245 110 252 0 0 0 chr13 5026043 5026071 -96847098 + (A)n Simple_repeat Simple_repeat 1 28 0 721 161 8 16 chr13 5026086 5026210 -96846959 - THE1C LTR MaLR -252 123 1 7564 223 77 17 chr13 5026211 5029178 -96843991 + L1ME1 LINE L1 2894 6059 -107 2399 94 0 0 chr13 5029178 5029486 -96843683 - AluSg SINE Alu -2 308 1 7564 223 77 17 chr13 5029486 5029595 -96843574 + L1ME1 LINE L1 6059 6160 -6 246 301 96 19 chr13 5029612 5029768 -96843401 + L1M2 LINE L1 2290 2457 -4392 22 0 0 0 chr13 5029836 5029858 -96843311 + AT_rich Low_complexity Low_complexity 1 22 0 209 286 0 0 chr13 5031075 5031124 -96842045 + (TG)n Simple_repeat Simple_repeat 1 49 0 5589 147 43 11 chr13 5033653 5034130 -96839039 - L1MA5A LINE L1 -1 6296 5836 402 57 0 0 chr13 5034130 5034183 -96838986 + (TG)n Simple_repeat Simple_repeat 2 54 0 5589 147 43 11 chr13 5034183 5034759 -96838410 - L1MA5A LINE L1 -461 5836 5209 1386 172 4 4 chr13 5034744 5035005 -96838164 + L1MA5A LINE L1 4963 5223 -923 * 889 282 179 34 chr13 5035295 5036732 -96836437 + L1ME2 LINE L1 3953 5593 -743 202 255 43 0 chr13 5036758 5036805 -96836364 - L2 LINE L2 -16 3297 3249 310 277 39 31 chr13 5036955 5037085 -96836084 + L1ME2 LINE L1 5758 5888 -276 5704 54 4 16 chr13 5037423 5037780 -96835389 + L1PA7 LINE L1 5472 5819 -335 2414 91 0 0 chr13 5037780 5038087 -96835082 + AluY SINE Alu 1 307 -4 5704 54 4 16 chr13 5038087 5038415 -96834754 + L1PA7 LINE L1 5819 6149 -5 21 0 0 0 chr13 5038415 5038436 -96834733 + AT_rich Low_complexity Low_complexity 1 21 0 509 281 104 58 chr13 5038529 5038656 -96834513 + L1MC4a LINE L1 4027 4147 -1999 1590 189 3 22 chr13 5038656 5038969 -96834200 + AluJo SINE Alu 1 307 -5 509 281 104 58 chr13 5038969 5039446 -96833723 + L1MC4a LINE L1 4147 4659 -1487 247 360 61 19 chr13 5039719 5039933 -96833236 + L1MC4a LINE L1 5376 5598 -523 267 289 30 30 chr13 5040141 5040276 -96832893 + L1MC4a LINE L1 5800 5934 -1874 393 275 119 82 chr13 5040936 5041289 -96831880 - L1M2 LINE L1 -5907 942 577 3698 157 36 22 chr13 5041757 5042445 -96830724 - ERVL-B2 LTR ERVL -1634 4130 3433 6533 155 35 21 chr13 5042452 5043010 -96830159 - ERVL-B2 LTR ERVL -2909 2855 2307 1635 141 131 20 chr13 5043010 5043315 -96829854 + MER44D DNA MER2_type 1 609 0 6533 155 35 21 chr13 5043315 5043862 -96829307 - ERVL-B2 LTR ERVL -3457 2307 1734 856 213 0 0 chr13 5043862 5044012 -96829157 - FRAM SINE Alu -25 151 2 7943 201 68 10 chr13 5044012 5045667 -96827502 - ERVL-B2 LTR ERVL -4013 1751 2 2290 181 138 7 chr13 5045672 5045710 -96827459 - MLT2B2 LTR ERVL -8 507 475 210 91 0 0 chr13 5045710 5045743 -96827426 + (TA)n Simple_repeat Simple_repeat 1 33 0 2290 181 138 7 chr13 5045743 5046152 -96827017 - MLT2B2 LTR ERVL -40 475 1 5484 52 33 13 chr13 5050250 5050319 -96822850 - MER11D LTR ERVK -195 702 636 2897 19 0 0 chr13 5050319 5050636 -96822533 - AluYb8 SINE Alu -1 317 1 5484 52 33 13 chr13 5050636 5051254 -96821915 - MER11D LTR ERVK -261 636 1 1602 195 118 8 chr13 5051263 5051627 -96821542 - MLT2B3 LTR ERVL -147 407 4 248 291 52 87 chr13 5051858 5051973 -96821196 + MIR SINE MIR 74 183 -79 1742 153 7 23 chr13 5051973 5052274 -96820895 - AluSx SINE Alu -16 296 1 248 291 52 87 chr13 5052274 5052330 -96820839 + MIR SINE MIR 183 239 -23 196 204 91 0 chr13 5052296 5052340 -96820829 + L2 LINE L2 3251 3298 -15 * 193 296 143 0 chr13 5052473 5052571 -96820598 + L2 LINE L2 3183 3294 -19 2275 95 7 0 chr13 5053163 5053469 -96819700 - AluY SINE Alu -3 308 1 1329 244 103 44 chr13 5053476 5053930 -96819239 + LTR26E LTR ERV1 123 608 0 232 244 37 73 chr13 5053930 5053973 -96819196 - MER57B LTR ERV1 -83 351 312 1069 134 120 49 chr13 5054089 5054373 -96818796 + L1MA8 LINE L1 5983 6286 -5 265 262 60 0 chr13 5055268 5055352 -96817817 + MIR SINE MIR 81 169 -93 1220 149 45 0 chr13 5056065 5056266 -96816903 + MER2 DNA MER2_type 1 210 -135 297 188 38 75 chr13 5056292 5056372 -96816797 + MER2 DNA MER2_type 268 344 -1 2404 152 52 2 chr13 5056593 5057001 -96816168 + MSTA LTR MaLR 1 428 0 181 0 69 0 chr13 5058063 5058092 -96815077 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 273 231 15 0 chr13 5058139 5058204 -96814965 + MER34 LTR ERV1 25 90 -452 268 280 59 8 chr13 5058230 5058348 -96814821 + LTR48B LTR ERV1 141 264 -380 324 70 0 0 chr13 5058467 5058510 -96814659 + (TA)n Simple_repeat Simple_repeat 1 43 0 2381 55 41 0 chr13 5058948 5059240 -96813929 - AluY SINE Alu -7 304 1 314 291 17 84 chr13 5060042 5060221 -96812948 - L1ME4a LINE L1 -9 6112 5946 238 263 49 29 chr13 5060365 5060570 -96812599 - L1ME4a LINE L1 -304 5817 5609 227 184 0 0 chr13 5060572 5060610 -96812559 - tRNA-Arg-AGA tRNA tRNA -38 38 1 2236 92 3 0 chr13 5061415 5061748 -96811421 + AluSp SINE Alu 1 334 0 2451 56 0 31 chr13 5061758 5062078 -96811091 + AluY SINE Alu 1 310 -1 195 129 0 0 chr13 5062122 5062153 -96811016 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 362 279 10 10 chr13 5062153 5062257 -96810912 + L1M4 LINE L1 548 651 -5891 2257 74 3 10 chr13 5062359 5062658 -96810511 - AluY SINE Alu -14 297 1 2559 219 18 58 chr13 5062660 5063495 -96809674 + L1M4 LINE L1 673 1471 -5071 2055 134 23 0 chr13 5063495 5063794 -96809375 + AluSx SINE Alu 1 306 -6 2559 219 18 58 chr13 5063794 5063855 -96809314 + L1M4 LINE L1 1471 1533 -5009 930 303 32 23 chr13 5063869 5064722 -96808447 + L1M4 LINE L1 1747 2718 -3926 2579 68 0 0 chr13 5064722 5065033 -96808136 + AluY SINE Alu 1 311 0 381 203 16 23 chr13 5065061 5065189 -96807980 + GA-rich Low_complexity Low_complexity 5 131 0 217 267 0 0 chr13 5065356 5065401 -96807768 + MIR SINE MIR 197 241 -21 27 0 0 0 chr13 5065666 5065693 -96807476 + AT_rich Low_complexity Low_complexity 1 27 0 2155 103 0 34 chr13 5065706 5066027 -96807142 - AluSg SINE Alu 0 310 1 1166 177 39 120 chr13 5066675 5067059 -96806110 - MLT1A1 LTR MaLR -12 353 1 200 254 17 17 chr13 5067162 5067221 -96805948 - MIR SINE MIR -6 256 198 2239 113 7 3 chr13 5067411 5067721 -96805448 + AluSx SINE Alu 1 311 -1 23 33 0 0 chr13 5067914 5067944 -96805225 + AT_rich Low_complexity Low_complexity 1 30 0 1314 216 113 30 chr13 5068453 5068879 -96804290 + MLT1C LTR MaLR 7 467 0 262 253 70 70 chr13 5069876 5069942 -96803227 + MIR SINE MIR 6 71 -191 2206 157 49 53 chr13 5069942 5070394 -96802775 - LTR47A LTR ERVL -2 450 1 262 253 70 70 chr13 5070394 5070485 -96802684 + MIR SINE MIR 70 163 -99 326 220 144 3 chr13 5070545 5070660 -96802509 - MER97a DNA MER1_type? -725 169 44 1210 268 65 31 chr13 5071750 5071934 -96801235 - L1M4 LINE L1 -2391 3755 3579 2132 112 20 0 chr13 5071934 5072228 -96800941 + AluSx SINE Alu 1 300 -12 1210 268 65 31 chr13 5072228 5072786 -96800383 - L1M4 LINE L1 -2567 3579 2988 501 317 76 62 chr13 5072845 5072990 -96800179 - L1M4 LINE L1 -3275 2871 2730 1958 138 0 10 chr13 5072990 5073287 -96799882 + AluSx SINE Alu 1 294 -18 501 317 76 62 chr13 5073287 5073642 -96799527 - L1M4 LINE L1 -3416 2730 2364 25 95 0 0 chr13 5073678 5073752 -96799417 + AT_rich Low_complexity Low_complexity 1 74 0 318 204 21 43 chr13 5073897 5073990 -96799179 - L1ME4a LINE L1 -159 5962 5872 477 0 0 0 chr13 5075113 5075166 -96798003 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 399 324 87 18 chr13 5075456 5075675 -96797494 - MIR SINE MIR -16 246 13 1004 205 142 15 chr13 5075720 5076057 -96797112 - LTR25 LTR ERV1 0 794 415 485 131 12 0 chr13 5076284 5076368 -96796801 - MER61E LTR ERV1 -484 85 1 3208 214 33 42 chr13 5077141 5078049 -96795120 - L1M3 LINE L1 -591 5592 4692 2341 107 0 0 chr13 5078049 5078349 -96794820 + AluSg SINE Alu 1 300 -10 3208 214 33 42 chr13 5078349 5078712 -96794457 - L1M3 LINE L1 -1491 4692 4327 2005 140 3 22 chr13 5078903 5079218 -96793951 + AluSc SINE Alu 1 309 0 322 315 48 5 chr13 5079402 5079635 -96793534 - L1ME4a LINE L1 -521 5641 5383 2367 122 49 35 chr13 5079985 5080411 -96792758 - MSTB1 LTR MaLR 0 432 1 22 56 0 0 chr13 5081194 5081230 -96791939 + AT_rich Low_complexity Low_complexity 1 36 0 2370 95 0 7 chr13 5081313 5081619 -96791550 + AluSx SINE Alu 3 306 -6 21 0 0 0 chr13 5082332 5082353 -96790816 + AT_rich Low_complexity Low_complexity 1 21 0 2120 137 116 18 chr13 5082640 5083028 -96790141 - MSTA LTR MaLR -2 426 1 273 196 21 10 chr13 5084307 5084404 -96788765 + (TA)n Simple_repeat Simple_repeat 1 98 0 419 305 62 22 chr13 5084419 5084695 -96788474 + L1MEd LINE L1 1040 1371 -4885 2397 197 112 6 chr13 5084759 5085418 -96787751 - L1MB7 LINE L1 -9 6175 5447 28 0 0 0 chr13 5085471 5085499 -96787670 + AT_rich Low_complexity Low_complexity 1 28 0 2111 134 0 0 chr13 5085660 5085959 -96787210 + AluSx SINE Alu 2 300 -12 184 375 10 10 chr13 5086136 5086232 -96786937 - L2 LINE L2 -1240 2074 1979 715 135 28 17 chr13 5086331 5086509 -96786660 + (TG)n Simple_repeat Simple_repeat 1 180 0 2334 75 3 3 chr13 5087605 5087912 -96785257 - AluY SINE Alu -4 307 1 1024 141 33 38 chr13 5088599 5088812 -96784357 + MSTC LTR MaLR 1 212 -216 182 275 0 0 chr13 5088986 5089026 -96784143 - L2 LINE L2 -20 3252 3213 22 56 0 0 chr13 5089522 5089558 -96783611 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 5089744 5089773 -96783396 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr13 5090088 5090134 -96783035 + AT_rich Low_complexity Low_complexity 1 46 0 451 301 117 8 chr13 5090403 5090652 -96782517 + L1MEc LINE L1 47 322 -6074 315 277 19 25 chr13 5090672 5090831 -96782338 + L1MEc LINE L1 362 519 -5877 3157 61 16 0 chr13 5091217 5091641 -96781528 - MER11B LTR ERVK -805 431 1 8809 191 30 8 chr13 5091643 5093649 -96779520 + L1PA15 LINE L1 3054 5149 -1016 2216 114 140 8 chr13 5093649 5094027 -96779142 + MSTA LTR MaLR 1 428 0 8809 191 30 8 chr13 5094027 5095063 -96778106 + L1PA15 LINE L1 5149 6161 -4 1997 182 26 5 chr13 5095059 5095487 -96777682 + L1MC3 LINE L1 5461 5897 -1888 * 915 349 49 55 chr13 5095511 5096929 -96776240 + ERVL LTR ERVL 3915 5323 -441 2306 71 7 14 chr13 5097240 5097534 -96775635 - AluY SINE Alu -15 296 5 657 318 87 7 chr13 5097646 5097932 -96775237 + LTR16A1 LTR ERVL 148 456 -1 3748 93 2 8 chr13 5098245 5098759 -96774410 - MER9 LTR ERVK 0 511 1 2262 53 0 0 chr13 5098759 5099041 -96774128 - HERVK9 LTR ERVK 0 5916 5635 7319 96 4 6 chr13 5099137 5100193 -96772976 - HERVK9 LTR ERVK -282 5634 4581 1712 64 0 9 chr13 5100191 5100424 -96772745 - HERVK9 LTR ERVK -1975 3941 3711 * 10697 60 0 1 chr13 5100424 5101795 -96771374 - HERVK9 LTR ERVK -3130 2786 1417 1912 90 0 14 chr13 5101898 5102187 -96770982 - HERVK9 LTR ERVK -4519 1397 1113 2797 63 7 85 chr13 5102188 5102648 -96770521 - HERVK9 LTR ERVK -5348 568 145 232 356 132 15 chr13 5102906 5103111 -96770058 - L3 LINE CR1 -708 869 641 187 229 0 42 chr13 5103294 5103342 -96769827 + L2 LINE L2 3267 3312 -1 2028 156 56 67 chr13 5103726 5103926 -96769243 + MSTB LTR MaLR 1 202 -224 2358 96 0 3 chr13 5103926 5104227 -96768942 + AluSg SINE Alu 1 300 -10 2028 156 56 67 chr13 5104227 5104457 -96768712 + MSTB LTR MaLR 202 426 0 1141 184 49 0 chr13 5104828 5105072 -96768097 + L1MA9 LINE L1 6019 6274 -38 1834 142 43 13 chr13 5106784 5107086 -96766083 + AluSx SINE Alu 1 311 -1 586 285 109 0 chr13 5107243 5107408 -96765761 + MER5A DNA MER1_type 7 189 0 269 313 50 50 chr13 5107482 5107661 -96765508 + MIR SINE MIR 71 249 -13 205 284 74 0 chr13 5110360 5110441 -96762728 + MIR SINE MIR 116 202 -60 1265 160 9 5 chr13 5110855 5111067 -96762102 - pTR5 LTR ERV1 -2045 393 181 258 314 48 0 chr13 5111069 5111174 -96761995 - LTR30 LTR ERV1 -69 653 544 3994 177 79 38 chr13 5111178 5112145 -96761024 - pTR5 LTR ERV1 -417 2021 740 186 145 0 53 chr13 5115435 5115511 -96757658 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 204 245 0 0 chr13 5116990 5117039 -96756130 + T-rich Low_complexity Low_complexity 1 49 0 217 200 40 0 chr13 5117635 5117685 -96755484 + L2 LINE L2 3221 3272 0 245 301 126 10 chr13 5117868 5117971 -96755198 - L1MC4 LINE L1 -1 8041 7927 372 378 92 22 chr13 5118421 5118789 -96754380 - L1ME LINE L1 -466 5698 5305 631 349 90 30 chr13 5118953 5119179 -96753990 - L1ME LINE L1 -838 5308 5097 2166 120 40 0 chr13 5119179 5119479 -96753690 + AluSx SINE Alu 1 312 0 631 349 90 30 chr13 5119479 5120500 -96752669 - L1ME LINE L1 -1049 5097 3987 1584 191 65 3 chr13 5121112 5121162 -96752007 - L1MC3 LINE L1 -740 7045 7000 1470 100 4 123 chr13 5121162 5121422 -96751747 - AluSc SINE Alu -8 301 73 1584 191 65 3 chr13 5121422 5121712 -96751457 - L1MC3 LINE L1 -785 7000 6684 1386 258 33 0 chr13 5121716 5122135 -96751034 + L1MB8 LINE L1 1046 1478 -4906 690 185 7 34 chr13 5122136 5122282 -96750887 - MER4D LTR ERV1 0 903 762 * 1958 141 141 5 chr13 5122277 5122653 -96750516 + MER9 LTR ERVK 85 511 0 2213 171 29 113 chr13 5122653 5123337 -96749832 - MER4E LTR ERV1 -135 644 18 980 276 39 3 chr13 5123347 5123684 -96749485 + L1MB8 LINE L1 1500 1848 -4536 7230 214 44 31 chr13 5123840 5124716 -96748453 + L1MB8 LINE L1 3325 4188 -2226 2090 144 0 10 chr13 5124716 5125021 -96748148 + AluSg SINE Alu 1 302 -8 7230 214 44 31 chr13 5125021 5127183 -96745986 + L1MB8 LINE L1 4188 6408 -6 452 256 98 47 chr13 5127346 5127643 -96745526 + L1MC/D LINE L1 3682 3993 -2153 558 310 107 47 chr13 5127669 5128117 -96745052 + REP3 LTR ERV 1 475 -87 317 354 149 24 chr13 5128293 5128581 -96744588 + L1MC/D LINE L1 4098 4421 -1725 318 267 13 0 chr13 5128671 5128746 -96744423 + LTR33 LTR ERVL 103 178 -343 413 256 0 0 chr13 5128955 5129045 -96744124 + LTR33A LTR ERVL 434 523 0 313 343 28 14 chr13 5129051 5129194 -96743975 + L1MC/D LINE L1 4474 4618 -1528 326 240 39 45 chr13 5129381 5129560 -96743609 + L1P LINE L1 4886 5063 -1083 2098 117 6 46 chr13 5129715 5130041 -96743128 + AluSq SINE Alu 1 313 0 325 326 60 18 chr13 5130084 5130450 -96742719 + L1MC/D LINE L1 5258 5637 -484 800 248 40 56 chr13 5130450 5130640 -96742529 - MLT1B LTR MaLR 0 390 205 267 31 0 0 chr13 5130640 5130672 -96742497 + (TG)n Simple_repeat Simple_repeat 1 32 0 800 248 40 56 chr13 5130672 5130784 -96742385 - MLT1B LTR MaLR -185 205 93 332 174 0 14 chr13 5131697 5131766 -96741403 - MLT1E1 LTR MaLR -402 252 185 226 219 125 0 chr13 5131782 5131846 -96741323 - MLT1E1 LTR MaLR -573 81 10 1078 264 34 3 chr13 5132721 5133070 -96740099 + MLT1A1 LTR MaLR 4 363 -2 408 254 39 8 chr13 5133085 5133215 -96739954 + MIR SINE MIR 50 183 -79 798 199 28 0 chr13 5134126 5134307 -96738862 + L1MB7 LINE L1 5282 5467 -707 718 209 4 8 chr13 5134310 5134546 -96738623 + GA-rich Low_complexity Low_complexity 1 235 0 1131 98 0 0 chr13 5134561 5134724 -96738445 + (GGAA)n Simple_repeat Simple_repeat 3 165 0 403 179 21 32 chr13 5134892 5134987 -96738182 + L1MB7 LINE L1 5485 5578 -602 801 251 45 31 chr13 5135027 5135314 -96737855 + L1MB7 LINE L1 5819 6109 -75 268 225 0 70 chr13 5135417 5135488 -96737681 + L1MB7 LINE L1 6058 6123 -61 196 229 0 0 chr13 5135518 5135566 -96737603 - MIR SINE MIR -115 147 100 1714 116 88 52 chr13 5139764 5140126 -96733043 - THE1C LTR MaLR 0 375 1 203 254 14 28 chr13 5141553 5141624 -96731545 - L2 LINE L2 -77 3195 3126 252 245 59 10 chr13 5142724 5142826 -96730343 - MLT1D LTR MaLR -135 370 264 1128 178 50 0 chr13 5143476 5143678 -96729491 - MSTB LTR MaLR 0 426 215 1303 182 88 61 chr13 5143692 5143825 -96729344 + MER66B LTR ERV1 115 243 -243 2014 129 0 62 chr13 5143825 5144134 -96729035 + AluSx SINE Alu 5 294 -18 1303 182 88 61 chr13 5144134 5144362 -96728807 + MER66B LTR ERV1 243 486 0 734 223 0 0 chr13 5144446 5144585 -96728584 + AluJb SINE Alu 137 275 -37 255 313 22 37 chr13 5144605 5144739 -96728430 + L1MC4 LINE L1 7693 7824 -218 361 242 50 42 chr13 5144746 5144866 -96728303 + L1MC4 LINE L1 7922 8042 0 231 321 107 5 chr13 5145157 5145344 -96727825 + HAL1b LINE L1 883 1088 -260 6147 219 46 13 chr13 5146012 5146589 -96726580 - L1MC3 LINE L1 0 7785 7229 2268 150 34 29 chr13 5146589 5147035 -96726134 + MER83 LTR ERV1 1 448 0 6147 219 46 13 chr13 5147035 5147970 -96725199 - L1MC3 LINE L1 -556 7229 6223 180 0 0 0 chr13 5148120 5148140 -96725029 + (CACAA)n Simple_repeat Simple_repeat 3 22 0 391 99 10 59 chr13 5149017 5149118 -96724051 + (GAAA)n Simple_repeat Simple_repeat 2 97 0 872 117 5 126 chr13 5149224 5149401 -96723768 - MER53 DNA DNA 0 189 41 2122 126 0 0 chr13 5149401 5149687 -96723482 - AluSq SINE Alu -27 286 1 872 117 5 126 chr13 5149687 5149723 -96723446 - MER53 DNA DNA -148 41 2 1373 171 52 42 chr13 5149890 5150040 -96723129 + MLT1A2 LTR MaLR 6 153 -221 225 0 0 0 chr13 5150040 5150065 -96723104 + (TC)n Simple_repeat Simple_repeat 1 25 0 1373 171 52 42 chr13 5150065 5150224 -96722945 + MLT1A2 LTR MaLR 153 318 -56 196 269 90 0 chr13 5150394 5150461 -96722708 + MIR SINE MIR 65 137 -71 270 0 0 0 chr13 5150639 5150669 -96722500 + (CA)n Simple_repeat Simple_repeat 2 31 0 262 277 9 18 chr13 5351871 5351983 -96521186 + GA-rich Low_complexity Low_complexity 2 112 0 499 137 0 0 chr13 5352252 5352325 -96520844 - AluSx SINE Alu -16 296 224 1435 144 14 0 chr13 5352405 5352620 -96520549 - AluSx SINE Alu -94 218 1 28 48 0 0 chr13 5352627 5352669 -96520500 + AT_rich Low_complexity Low_complexity 1 42 0 229 361 14 0 chr13 5352924 5352996 -96520173 + MIR SINE MIR 39 111 -97 2144 117 0 32 chr13 5354137 5354453 -96518716 - AluSx SINE Alu -6 306 1 362 333 74 0 chr13 5354644 5354779 -96518390 + MIR SINE MIR 21 165 -97 187 259 103 0 chr13 5354873 5354931 -96518238 + MIR SINE MIR 187 250 -12 2729 36 0 0 chr13 5355414 5355723 -96517446 + AluY SINE Alu 1 309 -2 518 316 111 21 chr13 5356293 5356854 -96516315 - L2 LINE L2 -54 3259 2636 304 314 98 20 chr13 5356941 5357043 -96516126 - L2 LINE L2 -20 3252 3143 192 40 0 0 chr13 5358079 5358104 -96515065 + (CA)n Simple_repeat Simple_repeat 2 26 0 264 59 0 0 chr13 5358127 5358161 -96515008 + (TG)n Simple_repeat Simple_repeat 2 35 0 339 314 63 22 chr13 5358251 5358566 -96514603 + L1M4 LINE L1 2785 3112 -3034 746 276 71 4 chr13 5358585 5358810 -96514359 + MIR SINE MIR 20 259 -3 192 77 0 0 chr13 5358849 5358875 -96514294 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 2087 65 4 11 chr13 5358877 5359140 -96514029 - AluY SINE Alu -17 294 34 1906 114 4 0 chr13 5359278 5359541 -96513628 - AluY SINE Alu -47 264 1 664 271 77 28 chr13 5359587 5359912 -96513257 + L1M4 LINE L1 4634 4974 -1172 644 298 53 26 chr13 5359912 5360140 -96513029 - L2 LINE L2 -1385 1929 1696 306 277 53 0 chr13 5360183 5360277 -96512892 - L2 LINE L2 -1605 1709 1611 963 286 121 54 chr13 5360277 5360682 -96512487 - L2 LINE L2 -2636 678 247 212 294 0 0 chr13 5360692 5360743 -96512426 - L2 LINE L2 -3186 128 78 689 307 79 36 chr13 5361223 5361640 -96511529 - MLT1J2 LTR MaLR -15 435 1 2268 68 57 0 chr13 5361820 5362100 -96511069 + AluY SINE Alu 1 296 -15 3709 145 29 19 chr13 5362297 5362912 -96510257 - L1PA15 LINE L1 -1 6164 5544 21 71 0 0 chr13 5363055 5363097 -96510072 + AT_rich Low_complexity Low_complexity 1 42 0 1294 260 94 2 chr13 5363151 5363651 -96509518 + MER114 LTR ERV 20 565 -83 223 221 143 13 chr13 5363679 5363756 -96509413 - MIR SINE MIR -98 164 78 422 101 101 0 chr13 5363828 5363897 -96509272 - LTR12 LTR ERV1 -288 426 351 267 155 14 99 chr13 5363899 5363970 -96509199 - LTR30 LTR ERV1 -108 614 550 1150 116 233 5 chr13 5363970 5364185 -96508984 - LTR12 LTR ERV1 -450 264 1 227 319 44 44 chr13 5364709 5364822 -96508347 - MIR SINE MIR -66 142 30 2225 148 43 6 chr13 5365274 5365626 -96507543 - MLT1A1 LTR MaLR 0 365 1 1463 114 18 35 chr13 5365985 5366212 -96506957 - AluSg/x SINE Alu -11 299 77 2217 241 90 29 chr13 5367207 5367382 -96505787 - L1ME2 LINE L1 -16 6148 5985 2178 113 13 0 chr13 5367382 5367683 -96505486 - AluSq SINE Alu -8 305 1 2217 241 90 29 chr13 5367683 5368338 -96504831 - L1ME2 LINE L1 -179 5985 5254 694 138 69 15 chr13 5368351 5368481 -96504688 - MLT1D LTR MaLR 0 505 369 2245 114 3 0 chr13 5368492 5368798 -96504371 - AluSx SINE Alu -5 307 1 339 189 53 11 chr13 5368807 5368902 -96504267 - L1ME2 LINE L1 -981 5165 5067 * 1738 261 82 8 chr13 5368877 5369592 -96503577 - L1ME2 LINE L1 -3128 3018 2251 2240 75 0 3 chr13 5369877 5370212 -96502957 - AluY SINE Alu 0 334 1 2275 57 54 3 chr13 5370725 5371021 -96502148 + AluY SINE Alu 1 311 0 2478 90 0 0 chr13 5371289 5371590 -96501579 + AluSq SINE Alu 1 301 -12 225 302 0 23 chr13 5373180 5373266 -96499903 - L1MC/D LINE L1 -1876 5932 5849 2156 133 0 0 chr13 5373291 5373592 -96499577 - AluSx SINE Alu -11 301 1 922 190 42 28 chr13 5373629 5373845 -96499324 - MER20 DNA MER1_type 0 219 1 1217 247 105 32 chr13 5373953 5374580 -96498589 - Charlie2a DNA MER1_type -1174 1688 1016 236 376 38 55 chr13 5374620 5374808 -96498361 - L2 LINE L2 -445 2869 2686 2627 33 0 3 chr13 5374808 5375107 -96498062 + AluY SINE Alu 1 298 -13 236 376 38 55 chr13 5375107 5375208 -96497961 - L2 LINE L2 -628 2686 2585 288 308 107 37 chr13 5375212 5375511 -96497658 - L2 LINE L2 -1001 2313 1994 4055 122 30 38 chr13 5375525 5375819 -96497350 + MER39B LTR ERV1 1 296 -357 2301 73 0 23 chr13 5375819 5376120 -96497049 + AluY SINE Alu 1 294 -17 4055 122 30 38 chr13 5376120 5376483 -96496686 + MER39B LTR ERV1 296 653 0 2399 80 0 10 chr13 5376628 5376942 -96496227 - AluY SINE Alu 0 311 1 317 211 144 39 chr13 5377712 5377816 -96495353 - MIR3 SINE MIR -31 177 63 535 199 199 50 chr13 5378389 5378610 -96494559 - MIR SINE MIR -5 257 4 224 310 129 9 chr13 5379099 5379215 -96493954 - L2 LINE L2 -1364 1950 1821 2175 126 0 3 chr13 5379773 5380066 -96493103 - AluSx SINE Alu -20 292 1 2211 101 0 10 chr13 5380862 5381160 -96492009 - AluSx SINE Alu -17 295 1 2267 103 0 3 chr13 5381533 5381833 -96491336 - AluSx SINE Alu -13 299 1 267 208 28 14 chr13 5381874 5381946 -96491223 - MIR SINE MIR -109 153 81 297 313 46 23 chr13 5382033 5382164 -96491005 + L2 LINE L2 1459 1592 -1722 335 328 62 6 chr13 5382172 5382349 -96490820 + L2 LINE L2 1791 1977 -1337 2231 129 35 30 chr13 5382404 5382776 -96490393 + THE1C LTR MaLR 2 375 0 240 111 0 0 chr13 5383011 5383047 -96490122 + (A)n Simple_repeat Simple_repeat 1 36 0 2640 42 3 3 chr13 5384025 5384336 -96488833 - AluY SINE Alu 0 311 1 2275 60 3 3 chr13 5384966 5385271 -96487898 + AluY SINE Alu 1 305 0 1091 220 26 111 chr13 5385763 5386149 -96487020 + MLT1A1 LTR MaLR 13 365 0 1259 271 46 51 chr13 5386193 5386642 -96486527 - L2 LINE L2 -81 3232 2789 1696 154 3 74 chr13 5386642 5386966 -96486203 + AluJo SINE Alu 3 303 -9 1259 271 46 51 chr13 5386966 5387328 -96485841 - L2 LINE L2 -524 2789 2427 337 299 76 7 chr13 5389313 5389457 -96483712 + L2 LINE L2 3099 3252 -61 2114 88 53 3 chr13 5389902 5390185 -96482984 + AluY SINE Alu 1 297 -14 2087 138 16 0 chr13 5390305 5390610 -96482559 + AluSg SINE Alu 1 310 0 2248 97 7 10 chr13 5393554 5393863 -96479306 - AluSc SINE Alu 0 309 2 2325 101 0 0 chr13 5393864 5394161 -96479008 - AluSq SINE Alu -16 297 1 2166 130 3 0 chr13 5394169 5394469 -96478700 - AluSx SINE Alu -11 301 1 2105 130 10 0 chr13 5394477 5394777 -96478392 - AluSx SINE Alu -9 303 1 204 67 0 0 chr13 5394942 5394972 -96478197 + (CA)n Simple_repeat Simple_repeat 2 31 0 326 329 123 58 chr13 5395253 5395578 -96477591 - L2 LINE L2 -6 3266 2921 182 189 108 68 chr13 5395785 5395859 -96477310 - L2 LINE L2 -562 2752 2676 28 0 0 0 chr13 5396453 5396481 -96476688 + AT_rich Low_complexity Low_complexity 1 28 0 306 209 20 37 chr13 5396971 5397056 -96476113 - MIR SINE MIR -87 121 34 1648 142 53 114 chr13 5398318 5398749 -96474420 + LTR12 LTR ERV1 1 405 -309 424 211 100 11 chr13 5398751 5398841 -96474328 + LTR12 LTR ERV1 615 712 -2 191 358 117 8 chr13 5399264 5399384 -96473785 + MIR SINE MIR 16 148 -60 2574 99 14 0 chr13 5400707 5401051 -96472118 - L1PB1 LINE L1 -2 6149 5801 23 33 0 0 chr13 5401139 5401169 -96472000 + AT_rich Low_complexity Low_complexity 1 30 0 2448 57 0 7 chr13 5401710 5402007 -96471162 + AluY SINE Alu 1 295 -16 255 219 154 73 chr13 5402140 5402263 -96470906 - L2 LINE L2 -3 3269 3137 2464 226 86 42 chr13 5402289 5402984 -96470185 + MER21B LTR ERV1 1 726 -137 2449 88 0 3 chr13 5402988 5403294 -96469875 + AluSp SINE Alu 1 305 -8 228 182 23 0 chr13 5403658 5403702 -96469467 + L2 LINE L2 3268 3312 -1 22 35 0 0 chr13 5403894 5403923 -96469246 + AT_rich Low_complexity Low_complexity 1 29 0 2457 81 0 3 chr13 5403938 5404245 -96468924 + AluSc SINE Alu 1 306 -3 213 211 14 28 chr13 5405092 5405163 -96468006 + (TA)n Simple_repeat Simple_repeat 1 70 0 331 289 252 7 chr13 5405799 5405978 -96467191 - MIR SINE MIR -6 256 37 1818 285 160 28 chr13 5406132 5407063 -96466106 + L2 LINE L2 1671 2724 -590 1391 209 37 42 chr13 5407087 5407464 -96465705 - MLT1B LTR MaLR -11 379 5 558 286 161 43 chr13 5407474 5407937 -96465232 + L2 LINE L2 2743 3264 -49 181 242 0 0 chr13 5408295 5408328 -96464841 - L2 LINE L2 -16 3297 3265 258 264 14 114 chr13 5408789 5408929 -96464240 + MIR SINE MIR 119 244 -18 532 283 139 24 chr13 5408962 5409372 -96463797 - L1ME LINE L1 -368 5794 5338 307 255 100 32 chr13 5409372 5409538 -96463631 - MLT1H1 LTR MaLR -371 178 1 27 73 0 0 chr13 5409624 5409679 -96463490 + AT_rich Low_complexity Low_complexity 1 55 0 329 315 36 26 chr13 5409703 5410005 -96463164 - L1ME LINE L1 -946 5200 4896 828 217 79 21 chr13 5410302 5411587 -96461582 + L1ME2 LINE L1 4616 6109 -55 194 309 75 21 chr13 5411761 5411855 -96461314 + MIR SINE MIR 55 153 -109 235 293 54 34 chr13 5412192 5412397 -96460772 + HAL1 LINE L1 1550 1758 -749 2053 52 48 0 chr13 5412802 5413051 -96460118 - AluYa5 SINE Alu -49 262 2 311 0 0 25 chr13 5413056 5413096 -96460073 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 322 297 154 67 chr13 5413122 5413913 -96459256 + L1M4 LINE L1 2243 3102 -3044 207 0 0 0 chr13 5413991 5414014 -96459155 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2271 75 37 3 chr13 5414032 5414327 -96458842 - AluY SINE Alu -6 305 1 2170 79 58 0 chr13 5414550 5414841 -96458328 - AluY SINE Alu -3 308 1 1073 76 0 0 chr13 5414844 5414976 -96458193 - AluY SINE Alu -179 132 1 2052 180 49 14 chr13 5415594 5416039 -96457130 + LOR1b LTR ERV1 1 461 0 697 139 0 36 chr13 5416358 5416495 -96456674 - FLAM_C SINE Alu 0 143 12 2094 130 0 0 chr13 5416815 5417107 -96456062 + AluSg SINE Alu 1 292 -18 189 267 159 80 chr13 5417598 5417774 -96455395 - MIR3 SINE MIR -15 193 4 6984 133 91 93 chr13 5418053 5419754 -96453415 + pTR5 LTR ERV1 743 2438 0 227 73 49 0 chr13 5421871 5421912 -96451257 + (ATTAG)n Simple_repeat Simple_repeat 4 46 0 2243 86 0 17 chr13 5421963 5422265 -96450904 + AluY SINE Alu 1 297 -14 256 269 15 0 chr13 5422371 5422438 -96450731 - L2 LINE L2 -262 3010 2943 2240 104 7 3 chr13 5422515 5422814 -96450355 + AluSq SINE Alu 1 300 -13 819 206 47 51 chr13 5423484 5423737 -96449432 + MLT1A1 LTR MaLR 112 363 -2 610 264 139 88 chr13 5423810 5424307 -96448862 + L1ME3A LINE L1 5619 6140 -30 24 77 0 0 chr13 5424479 5424531 -96448638 + AT_rich Low_complexity Low_complexity 1 52 0 303 239 11 22 chr13 5425261 5425353 -96447816 + C-rich Low_complexity Low_complexity 6 96 0 212 189 0 0 chr13 5426538 5426575 -96446594 + A-rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr13 5426849 5426871 -96446298 + AT_rich Low_complexity Low_complexity 1 22 0 2187 101 11 0 chr13 5428260 5428547 -96444622 - AluSg SINE Alu -20 290 1 2279 80 3 0 chr13 5428994 5429282 -96443887 - AluY SINE Alu -4 307 19 368 266 85 53 chr13 5429292 5429611 -96443558 - L1ME4a LINE L1 -245 5876 5548 1460 77 15 5 chr13 5429625 5429820 -96443349 + AluY SINE Alu 1 197 -114 2686 150 65 7 chr13 5429921 5430567 -96442602 - L1MC/D LINE L1 -425 5817 5147 2349 90 3 3 chr13 5430665 5430977 -96442192 - AluSp SINE Alu -1 312 1 366 260 65 88 chr13 5431061 5431169 -96442000 - HAL1b LINE L1 -239 1109 1000 2277 84 3 13 chr13 5431169 5431478 -96441691 - AluY SINE Alu -5 306 1 366 260 65 88 chr13 5431478 5431753 -96441416 - HAL1b LINE L1 -348 1000 735 207 0 0 0 chr13 5432072 5432095 -96441074 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2186 74 0 18 chr13 5432095 5432380 -96440789 - AluSx SINE Alu -32 280 1 1724 130 3 34 chr13 5432823 5433115 -96440054 + AluSx SINE Alu 3 285 -27 492 62 0 0 chr13 5433115 5433179 -96439990 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2525 53 3 0 chr13 5433632 5433936 -96439233 + AluY SINE Alu 1 305 -6 281 326 112 23 chr13 5433957 5434900 -96438269 - L1M4 LINE L1 -2155 3991 2965 493 111 89 0 chr13 5434917 5435007 -96438162 + MER4A LTR ERV1 1 98 -566 1706 113 11 82 chr13 5435007 5435379 -96437790 + MER4A LTR ERV1 261 664 0 806 301 98 48 chr13 5435383 5435898 -96437271 - L1M4 LINE L1 -3200 2946 2385 2205 110 3 0 chr13 5435898 5436188 -96436981 + AluSq SINE Alu 2 292 -21 806 301 98 48 chr13 5436188 5436379 -96436790 - L1M4 LINE L1 -3761 2385 2205 25 51 0 0 chr13 5437933 5437972 -96435197 + AT_rich Low_complexity Low_complexity 1 39 0 4740 73 46 0 chr13 5438270 5438901 -96434268 - PABL_A LTR ERV1 0 660 1 602 186 0 8 chr13 5438914 5439032 -96434137 - L1P4 LINE L1 -402 5764 5648 * 7769 222 43 21 chr13 5439021 5440522 -96432647 - L1 LINE L1 -836 5546 4079 2340 89 0 13 chr13 5440522 5440825 -96432344 + AluY SINE Alu 1 299 -12 7769 222 43 21 chr13 5440825 5440981 -96432188 - L1 LINE L1 -2303 4079 3928 2153 106 0 3 chr13 5440981 5441289 -96431880 + AluSq SINE Alu 1 307 0 7769 222 43 21 chr13 5441289 5441931 -96431238 - L1 LINE L1 -2454 3928 3191 2063 178 70 5 chr13 5441931 5442329 -96430840 - MSTB LTR MaLR -2 424 1 7769 222 43 21 chr13 5442329 5442370 -96430799 - L1 LINE L1 -3191 3191 3152 2311 87 3 7 chr13 5442380 5442689 -96430480 - AluY SINE Alu -3 308 1 284 393 33 7 chr13 5442691 5442841 -96430328 - MIR SINE MIR -49 213 60 1941 154 106 23 chr13 5443150 5443545 -96429624 + MSTA LTR MaLR 1 428 0 2038 147 76 45 chr13 5443853 5444274 -96428895 + Tigger2a DNA MER2_type 1 434 0 1505 223 0 3 chr13 5444925 5445207 -96427962 + AluJo SINE Alu 1 281 -31 225 0 0 0 chr13 5445212 5445237 -96427932 + (T)n Simple_repeat Simple_repeat 1 25 0 643 197 74 18 chr13 5445258 5445462 -96427707 - L1 LINE L1 -3855 2527 2312 573 211 0 49 chr13 5445469 5445611 -96427558 - FAM SINE Alu -2 47 1 7294 215 57 31 chr13 5445624 5445882 -96427287 + L1M3 LINE L1 3001 3251 -2932 2213 101 3 0 chr13 5445882 5446170 -96426999 + AluY SINE Alu 13 301 -10 7294 215 57 31 chr13 5446170 5447517 -96425652 + L1M3 LINE L1 3251 4709 -1474 2341 107 0 0 chr13 5447517 5447817 -96425352 - AluSg SINE Alu -10 300 1 7294 215 57 31 chr13 5447817 5448725 -96424444 + L1M3 LINE L1 4709 5592 -591 485 131 12 0 chr13 5449495 5449579 -96423590 + MER61E LTR ERV1 1 85 -484 1019 204 139 15 chr13 5449806 5450144 -96423025 + LTR25 LTR ERV1 415 794 0 399 324 87 18 chr13 5450189 5450408 -96422761 + MIR SINE MIR 13 246 -16 432 0 0 0 chr13 5450698 5450746 -96422423 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 318 204 21 43 chr13 5451869 5451962 -96421207 + L1ME4a LINE L1 5872 5962 -159 25 95 0 0 chr13 5452107 5452181 -96420988 + AT_rich Low_complexity Low_complexity 1 74 0 549 311 76 62 chr13 5452217 5452572 -96420597 + L1M4 LINE L1 2364 2730 -3416 1958 138 0 10 chr13 5452572 5452869 -96420300 - AluSx SINE Alu -18 294 1 549 311 76 62 chr13 5452869 5453014 -96420155 + L1M4 LINE L1 2730 2871 -3275 843 256 78 20 chr13 5453073 5453561 -96419608 + L1M4 LINE L1 2988 3503 -2643 347 133 0 0 chr13 5453809 5453869 -96419300 + Alu SINE Alu 243 302 0 2492 62 0 7 chr13 5453913 5454220 -96418949 - AluY SINE Alu -6 305 1 2536 77 3 0 chr13 5454447 5454757 -96418412 - AluSx SINE Alu -1 311 1 2373 86 0 0 chr13 5455725 5456026 -96417143 + AluY SINE Alu 1 301 -10 2110 111 17 0 chr13 5456038 5456335 -96416834 + AluSx SINE Alu 11 312 0 23 0 0 0 chr13 5456366 5456389 -96416780 + AT_rich Low_complexity Low_complexity 1 23 0 984 115 0 7 chr13 5456433 5456581 -96416588 - AluY SINE Alu -4 307 161 1827 201 63 53 chr13 5456581 5457164 -96416005 + pTR5 LTR ERV1 744 1332 -1106 4049 150 65 5 chr13 5457208 5457853 -96415316 + LTR12 LTR ERV1 5 688 0 1063 138 25 0 chr13 5457854 5458014 -96415155 - AluY SINE Alu -147 164 1 1537 116 30 67 chr13 5458210 5458478 -96414691 - AluY SINE Alu -13 298 41 2241 79 3 14 chr13 5460053 5460379 -96412790 - AluSq SINE Alu 0 323 1 346 274 56 111 chr13 5461121 5461355 -96411814 + MLT1I LTR MaLR 68 288 -121 3491 111 108 89 chr13 5462013 5462776 -96410393 - LTR1 LTR ERV1 -8 777 1 382 281 50 91 chr13 5463025 5463163 -96410006 - MIR SINE MIR -25 237 112 2082 94 28 3 chr13 5463163 5463451 -96409718 + AluSp SINE Alu 3 297 -16 382 281 50 91 chr13 5463451 5463554 -96409615 - MIR SINE MIR -150 112 6 582 184 21 35 chr13 5464304 5464445 -96408724 - L1MB8 LINE L1 -1 6879 6741 2691 214 84 8 chr13 5464448 5465623 -96407546 - L1MB8 LINE L1 -238 6648 5328 3920 159 16 15 chr13 5465641 5466325 -96406844 - L1MA6 LINE L1 -1 6299 5615 2927 86 11 11 chr13 5466327 5466700 -96406469 - THE1C LTR MaLR -2 373 1 329 150 0 0 chr13 5466703 5466763 -96406406 - L1P LINE L1 -728 5428 5369 461 219 42 8 chr13 5466767 5466886 -96406283 - L1MB8 LINE L1 -3552 3296 3174 2851 230 34 77 chr13 5466896 5467193 -96405976 - L1M4 LINE L1 -2093 4864 4556 734 101 10 0 chr13 5467193 5467292 -96405877 - HY3 scRNA scRNA -1 100 1 2851 230 34 77 chr13 5467292 5468194 -96404975 - L1M4 LINE L1 -2401 4556 3716 356 0 23 0 chr13 5468345 5468389 -96404780 + (TG)n Simple_repeat Simple_repeat 2 46 0 4930 240 59 43 chr13 5468477 5469925 -96403244 - L1M4 LINE L1 -5304 1555 84 5628 147 24 10 chr13 5469943 5470019 -96403150 + L1PB3 LINE L1 4755 4828 -1326 2055 87 42 3 chr13 5470019 5470307 -96402862 + AluY SINE Alu 1 299 -12 5628 147 24 10 chr13 5470307 5470787 -96402382 + L1PB3 LINE L1 4828 5300 -854 2471 53 0 3 chr13 5470787 5471087 -96402082 + AluY SINE Alu 1 299 -12 5628 147 24 10 chr13 5471087 5471878 -96401291 + L1PB3 LINE L1 5300 6115 -39 1074 40 0 0 chr13 5471903 5472029 -96401140 + AluY SINE Alu 177 302 -9 284 276 13 26 chr13 5472095 5472171 -96400998 - L1M4 LINE L1 -6770 89 15 836 150 0 0 chr13 5472174 5472307 -96400862 - AluSg/x SINE Alu -3 309 177 336 176 96 128 chr13 5472316 5472503 -96400666 + Charlie7 DNA MER1_type 2426 2606 -6 1585 173 114 82 chr13 5473369 5473832 -96399337 + LTR12 LTR ERV1 1 478 -236 415 280 147 63 chr13 5474792 5475235 -96397934 - L1MB8 LINE L1 -5899 950 471 2151 57 0 47 chr13 5476938 5477238 -96395931 + AluY SINE Alu 1 286 -25 1418 117 5 0 chr13 5477240 5477482 -96395687 + AluSg/x SINE Alu 85 327 0 191 168 42 0 chr13 5479026 5479080 -96394089 - MIR SINE MIR -62 146 88 1222 143 38 5 chr13 5479097 5479307 -96393862 - MSTB1 LTR MaLR -24 408 192 224 257 0 57 chr13 5479531 5479636 -96393533 + CT-rich Low_complexity Low_complexity 6 104 0 2213 104 0 7 chr13 5480133 5480432 -96392737 - AluSx SINE Alu -15 297 1 1538 239 43 5 chr13 5480434 5480831 -96392338 - L1M4 LINE L1 -1780 4366 3955 207 0 0 0 chr13 5480831 5480854 -96392315 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1903 82 0 0 chr13 5480866 5481099 -96392070 - AluSc SINE Alu -76 233 1 999 225 10 0 chr13 5481099 5481299 -96391870 - L1MCa LINE L1 -6206 220 19 7115 91 27 21 chr13 5481385 5482337 -96390832 - L1MA2 LINE L1 -8 6296 5332 2049 141 0 16 chr13 5482337 5482642 -96390527 - AluSx SINE Alu -12 300 1 7115 91 27 21 chr13 5482642 5482828 -96390341 - L1MA2 LINE L1 -972 5332 5148 365 309 73 61 chr13 5482831 5483077 -96390092 + L2 LINE L2 3037 3285 -28 546 179 83 36 chr13 5483434 5483602 -96389567 + MER104 DNA MER2_type 2 177 -3 36 0 0 0 chr13 5483642 5483678 -96389491 + AT_rich Low_complexity Low_complexity 1 36 0 2223 77 4 0 chr13 5484005 5484278 -96388891 + AluSc SINE Alu 1 274 -35 219 36 0 0 chr13 5484279 5484307 -96388862 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 408 40 0 0 chr13 5484306 5484356 -96388813 + (CA)n Simple_repeat Simple_repeat 1 50 0 462 269 101 71 chr13 5484392 5484795 -96388374 - MLT1K LTR MaLR 0 588 146 206 353 104 6 chr13 5485860 5486033 -96387136 - MIR SINE MIR -53 209 20 2286 159 3 9 chr13 5486179 5486518 -96386651 - MER1B DNA MER1_type 0 337 1 24 103 0 0 chr13 5486969 5487056 -96386113 + AT_rich Low_complexity Low_complexity 1 87 0 655 298 41 17 chr13 5488516 5488808 -96384361 + HAL1 LINE L1 1486 1784 -723 1700 193 18 2 chr13 5490995 5491465 -96381704 - L1 LINE L1 -3650 3198 2719 3783 146 26 38 chr13 5491465 5492128 -96381041 + L1MA6 LINE L1 5632 6286 -14 2289 103 0 23 chr13 5492174 5492484 -96380685 - AluSx SINE Alu -9 303 1 205 235 20 0 chr13 5493725 5493776 -96379393 + MIR3 SINE MIR 149 200 -8 1339 171 0 9 chr13 5494475 5494697 -96378472 - L1PA15 LINE L1 -2 6163 5944 22 0 0 0 chr13 5494804 5494826 -96378343 + AT_rich Low_complexity Low_complexity 1 22 0 182 79 0 53 chr13 5495357 5495395 -96377774 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr13 5495781 5495803 -96377366 + AT_rich Low_complexity Low_complexity 1 22 0 343 280 87 40 chr13 5497699 5497849 -96375320 + MIR SINE MIR 80 236 -26 2340 94 3 0 chr13 5498273 5498571 -96374598 - AluSg SINE Alu -11 299 1 21 0 0 0 chr13 5498891 5498912 -96374257 + AT_rich Low_complexity Low_complexity 1 21 0 549 247 52 0 chr13 5499321 5499475 -96373694 + LTR16A1 LTR ERVL 296 457 0 1248 137 197 9 chr13 5499476 5499790 -96373379 - MER65A LTR ERV1 0 445 1 1919 121 0 0 chr13 5499839 5500095 -96373074 - AluSc SINE Alu -53 256 1 293 293 30 86 chr13 5500607 5500805 -96372364 - ERVL LTR ERVL -364 5400 5214 1182 328 96 17 chr13 5501290 5502114 -96371055 - ERVL LTR ERVL -1112 4652 3764 960 275 95 34 chr13 5502309 5502918 -96370251 - ERVL LTR ERVL -2190 3464 2782 1852 134 39 20 chr13 5502918 5503224 -96369945 - AluSx SINE Alu 0 312 1 960 275 95 34 chr13 5503224 5503343 -96369826 - ERVL LTR ERVL -2872 2782 2672 534 276 138 16 chr13 5503424 5503670 -96369499 - ERVL LTR ERVL -3102 2552 2277 269 263 20 50 chr13 5503698 5503797 -96369372 - ERVL LTR ERVL -3526 2238 2143 1956 116 4 0 chr13 5503814 5504081 -96369088 - AluSx SINE Alu -44 268 1 23 33 0 0 chr13 5504643 5504673 -96368496 + AT_rich Low_complexity Low_complexity 1 30 0 2346 49 35 0 chr13 5506509 5506797 -96366372 + AluY SINE Alu 1 298 -13 341 43 21 0 chr13 5506960 5507007 -96366162 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 2214 85 0 7 chr13 5507020 5507301 -96365868 - AluSq SINE Alu -34 279 1 1095 298 155 40 chr13 5507451 5508718 -96364451 - L2 LINE L2 -5 3308 1892 539 349 94 14 chr13 5508936 5509351 -96363818 - MLT1K LTR MaLR 0 588 141 316 312 98 39 chr13 5510681 5511271 -96361898 - L1ME4a LINE L1 -239 5882 5258 225 233 0 0 chr13 5511803 5511846 -96361323 - L2 LINE L2 0 3272 3230 463 259 79 44 chr13 5512208 5512436 -96360733 + L1MEd LINE L1 973 1208 -4911 2289 104 0 3 chr13 5513171 5513470 -96359699 + AluSg SINE Alu 1 298 -12 2126 70 0 0 chr13 5513470 5513729 -96359440 + AluY SINE Alu 38 296 -15 2156 98 3 3 chr13 5514747 5515056 -96358113 + AluSx SINE Alu 1 309 0 855 305 88 19 chr13 5515088 5515761 -96357408 - L2 LINE L2 -5 3308 2590 979 195 92 21 chr13 5515897 5516324 -96356845 + MLT1D LTR MaLR 3 500 -5 878 318 151 14 chr13 5516585 5517159 -96356010 - L2 LINE L2 -223 3049 2386 2375 97 0 0 chr13 5517557 5517865 -96355304 - AluY SINE Alu -3 308 1 26 50 0 0 chr13 5518136 5518176 -96354993 + AT_rich Low_complexity Low_complexity 1 40 0 729 97 0 0 chr13 5519187 5519403 -96353766 - AluSg/x SINE Alu 0 423 208 21 89 0 0 chr13 5519680 5519736 -96353433 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr13 5520751 5520775 -96352394 + AT_rich Low_complexity Low_complexity 1 24 0 2578 157 34 16 chr13 5520776 5521278 -96351891 - L1MB1 LINE L1 -13 6155 5645 5192 170 20 3 chr13 5521278 5522580 -96350589 + L1MB1 LINE L1 4344 5667 -501 822 139 44 0 chr13 5524273 5524410 -96348759 + Tigger5 DNA MER2_type 2115 2257 -66 231 169 0 99 chr13 5524449 5524520 -96348649 + MLT1E1 LTR MaLR 591 654 0 2397 81 0 0 chr13 5525016 5525314 -96347855 + AluY SINE Alu 1 298 -13 296 309 68 60 chr13 5526330 5526465 -96346704 + L2 LINE L2 2878 3010 -303 2423 130 47 5 chr13 5526465 5526873 -96346296 + MSTA LTR MaLR 4 428 0 296 309 68 60 chr13 5526873 5527002 -96346167 + L2 LINE L2 3010 3144 -169 1895 142 3 26 chr13 5527803 5528105 -96345064 + AluSx SINE Alu 5 299 -13 2428 155 67 0 chr13 5528588 5529020 -96344149 + LOR1b LTR ERV1 1 461 0 186 171 0 0 chr13 5531587 5531628 -96341541 + (ATG)n Simple_repeat Simple_repeat 2 42 0 337 257 50 0 chr13 5532039 5532140 -96341029 - U6 snRNA snRNA 0 107 2 207 383 43 11 chr13 5532348 5532442 -96340727 - MIR SINE MIR -137 125 29 301 344 38 6 chr13 5532511 5532671 -96340498 + L1M4 LINE L1 3983 4147 -1999 23 54 0 0 chr13 5533144 5533181 -96339988 + AT_rich Low_complexity Low_complexity 1 37 0 1609 110 17 8 chr13 5533532 5533802 -96339367 + AluSp SINE Alu 46 317 0 191 191 119 0 chr13 5534761 5534803 -96338366 - L2 LINE L2 -9 3263 3217 246 296 14 0 chr13 5534834 5534905 -96338264 - L2 LINE L2 0 3272 3201 193 344 56 16 chr13 5535158 5535283 -96337886 - L2 LINE L2 -483 2831 2702 319 169 108 0 chr13 5535366 5535431 -96337738 + MER57A LTR ERV1 1 72 -331 572 270 150 10 chr13 5535480 5535837 -96337332 - L1M4 LINE L1 -841 5305 4886 2005 145 0 7 chr13 5535863 5536166 -96337003 + AluSx SINE Alu 1 301 -11 2435 76 3 0 chr13 5536316 5536618 -96336551 + AluY SINE Alu 1 303 -8 2329 82 0 14 chr13 5537001 5537294 -96335875 + AluSg SINE Alu 1 289 -21 188 204 204 0 chr13 5537745 5537799 -96335370 - L2 LINE L2 -8 3264 3200 186 43 0 0 chr13 5537978 5538001 -96335168 + (CA)n Simple_repeat Simple_repeat 1 23 0 743 257 18 0 chr13 5538092 5538263 -96334906 + MER5B DNA MER1_type 5 178 0 337 261 34 0 chr13 5538280 5538368 -96334801 + MER5A DNA MER1_type 14 104 -85 636 227 0 65 chr13 5538467 5538621 -96334548 + MLT1D LTR MaLR 3 146 -359 1378 232 171 5 chr13 5538624 5539097 -96334072 - L1MC4 LINE L1 -666 7376 6983 258 32 0 0 chr13 5539097 5539128 -96334041 + (CA)n Simple_repeat Simple_repeat 1 31 0 1378 232 171 5 chr13 5539128 5539245 -96333924 - L1MC4 LINE L1 -1059 6983 6540 957 218 198 43 chr13 5539348 5539796 -96333373 + L1ME1 LINE L1 5523 6041 -125 1440 183 63 0 chr13 5539796 5540064 -96333105 - AluJb SINE Alu -27 285 1 957 218 198 43 chr13 5540064 5540158 -96333011 + L1ME1 LINE L1 6041 6119 -47 21 0 0 0 chr13 5540333 5540354 -96332815 + AT_rich Low_complexity Low_complexity 1 21 0 9192 172 12 7 chr13 5540424 5540840 -96332329 - L1PA15 LINE L1 -9 6156 5744 2107 108 3 45 chr13 5540840 5541154 -96332015 - AluSx SINE Alu -11 301 1 9192 172 12 7 chr13 5541154 5543301 -96329868 - L1PA15 LINE L1 -421 5744 3606 2119 124 10 0 chr13 5543807 5544105 -96329064 + AluSx SINE Alu 1 301 -11 204 274 88 62 chr13 5544459 5544510 -96328659 - L2 LINE L2 -939 2375 2327 2077 80 0 0 chr13 5544510 5544760 -96328409 + AluY SINE Alu 40 289 -22 204 274 88 62 chr13 5544760 5544821 -96328348 - L2 LINE L2 -987 2327 2260 2681 171 24 4 chr13 5544857 5545355 -96327814 + L1MB3 LINE L1 5456 5963 -208 249 189 122 0 chr13 5545363 5545437 -96327732 + L1MA5 LINE L1 6209 6291 -9 1035 167 14 14 chr13 5545444 5545675 -96327494 + L1MB3 LINE L1 5945 6176 -7 462 315 64 8 chr13 5545748 5545999 -96327170 - L2 LINE L2 -1159 2155 1891 224 297 171 9 chr13 5546030 5546141 -96327028 + L2 LINE L2 3184 3312 -1 499 234 2 28 chr13 5546164 5546305 -96326864 + L1ME1 LINE L1 6029 6164 0 2295 86 33 0 chr13 5547056 5547359 -96325810 + AluSp SINE Alu 1 313 0 2395 56 0 3 chr13 5548365 5548677 -96324492 + AluY SINE Alu 1 311 0 2216 255 19 36 chr13 5549952 5550649 -96322520 + L1MEc LINE L1 58 742 -5654 3054 245 56 49 chr13 5550660 5552841 -96320328 + L1MEc LINE L1 953 3123 -3092 2464 72 13 0 chr13 5552841 5553147 -96320022 + AluY SINE Alu 1 310 -1 3054 245 56 49 chr13 5553147 5553216 -96319953 + L1MEc LINE L1 3123 3190 -3025 3103 184 56 6 chr13 5553324 5553971 -96319198 + L1MEc LINE L1 3344 4022 -2193 783 243 41 4 chr13 5553967 5554235 -96318934 + L1M4 LINE L1 3099 3376 -2770 * 569 172 26 9 chr13 5554775 5554891 -96318278 + L1MB4 LINE L1 6051 6168 -12 25 51 0 0 chr13 5554899 5554938 -96318231 + AT_rich Low_complexity Low_complexity 1 39 0 273 214 121 14 chr13 5555227 5555367 -96317802 - MLT1L LTR MaLR -32 583 429 266 230 0 87 chr13 5555444 5555571 -96317598 - MLT1J LTR MaLR -326 289 110 273 280 76 49 chr13 5555733 5555902 -96317267 + MIR SINE MIR 17 191 -71 214 147 0 0 chr13 5558175 5558209 -96314960 + (CAG)n Simple_repeat Simple_repeat 2 35 0 1800 167 3 32 chr13 5559765 5560076 -96313093 + AluJo SINE Alu 1 302 -10 917 122 0 0 chr13 5560094 5560217 -96312952 + FLAM_C SINE Alu 1 123 -10 25 51 0 0 chr13 5560290 5560329 -96312840 + AT_rich Low_complexity Low_complexity 1 39 0 1914 103 24 0 chr13 5560521 5560812 -96312357 + AluY SINE Alu 1 298 -13 2363 81 3 3 chr13 5560812 5561120 -96312049 + AluY SINE Alu 1 308 -3 377 246 70 21 chr13 5561148 5561290 -96311879 + MLT1J2 LTR MaLR 73 221 -229 1218 114 18 44 chr13 5561476 5561703 -96311466 - THE1C LTR MaLR 0 375 155 1190 165 64 23 chr13 5563546 5563764 -96309405 + AluJo SINE Alu 1 227 -85 205 122 73 24 chr13 5564312 5564353 -96308816 - L2 LINE L2 -2 3311 3269 2488 74 0 0 chr13 5564455 5564766 -96308403 + AluY SINE Alu 1 311 0 408 351 29 23 chr13 5564834 5565008 -96308161 - MIR3 SINE MIR -28 180 6 793 225 19 0 chr13 5565147 5565307 -96307862 + FRAM SINE Alu 1 163 -3 2384 169 29 2 chr13 5565702 5566117 -96307052 + MSTB LTR MaLR 1 426 0 6670 183 137 1 chr13 5566117 5567566 -96305603 + MSTB-int LTR MaLR 1 1645 -6 1099 180 0 0 chr13 5567571 5567760 -96305409 + MSTB LTR MaLR 1 189 -237 385 283 35 12 chr13 5567784 5567957 -96305212 + L1PB3 LINE L1 3 179 -6684 1670 149 11 13 chr13 5567972 5568431 -96304738 + L1PB3 LINE L1 1403 1860 -5003 * 27703 62 9 5 chr13 5568429 5569316 -96303853 - L1PA6 LINE L1 -5 6149 5267 1019 119 6 6 chr13 5569316 5569476 -96303693 - L1PA6 LINE L1 -10 6144 5985 27703 62 9 5 chr13 5569476 5573179 -96299990 - L1PA6 LINE L1 -887 5267 1552 15589 66 7 4 chr13 5573279 5575464 -96297705 - L1P LINE L1 -2530 3616 1425 11626 211 39 25 chr13 5575478 5579497 -96293672 + L1PB3 LINE L1 1888 6050 -820 2189 123 0 3 chr13 5579497 5579798 -96293371 + AluSc SINE Alu 1 300 -9 11626 211 39 25 chr13 5579798 5580256 -96292913 + L1PB3 LINE L1 6050 6500 -370 1855 74 18 0 chr13 5580256 5580485 -96292684 + AluSx SINE Alu 63 295 -17 2342 111 24 26 chr13 5580528 5580907 -96292262 + L1PB3 LINE L1 6493 6870 0 1235 164 36 5 chr13 5580937 5581157 -96292012 + MSTB LTR MaLR 200 426 0 2015 284 73 40 chr13 5583599 5584066 -96289103 - L1MC4a LINE L1 -748 5398 4948 2518 52 3 0 chr13 5584066 5584373 -96288796 - AluY SINE Alu -3 308 1 2015 284 73 40 chr13 5584373 5585140 -96288029 - L1MC4a LINE L1 -1198 4948 4208 2122 118 35 0 chr13 5585140 5585428 -96287741 + AluSx SINE Alu 1 298 -14 2015 284 73 40 chr13 5585428 5585516 -96287653 - L1MC4a LINE L1 -1938 4208 4124 1406 124 55 0 chr13 5585516 5585734 -96287435 + MER30 DNA MER1_type 1 230 0 2015 284 73 40 chr13 5585734 5587384 -96285785 - L1MC4a LINE L1 -2022 4124 3026 2140 139 0 3 chr13 5587384 5587685 -96285484 - AluSx SINE Alu -12 300 1 2015 284 73 40 chr13 5587685 5588048 -96285121 - L1MC4a LINE L1 -3120 3026 2676 385 332 55 6 chr13 5588148 5588418 -96284751 - L1MC4a LINE L1 -3581 2565 2278 2297 82 0 60 chr13 5588591 5588922 -96284247 - AluY SINE Alu 0 311 1 207 0 0 0 chr13 5589321 5589344 -96283825 + (TA)n Simple_repeat Simple_repeat 2 24 0 2114 112 42 0 chr13 5589433 5589719 -96283450 + AluSx SINE Alu 1 298 -14 213 39 0 0 chr13 5589858 5589884 -96283285 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2280 98 3 16 chr13 5590619 5590934 -96282235 - AluSx SINE Alu 0 312 2 226 322 0 0 chr13 5591156 5591215 -96281954 + L2 LINE L2 3250 3308 -5 22 0 0 0 chr13 5591675 5591697 -96281472 + AT_rich Low_complexity Low_complexity 1 22 0 2501 63 0 0 chr13 5591898 5592198 -96280971 - AluY SINE Alu -11 300 1 1273 105 0 0 chr13 5592313 5592484 -96280685 + AluSp SINE Alu 133 303 -10 2276 113 0 0 chr13 5593748 5594048 -96279121 - AluSx SINE Alu -12 300 1 354 332 124 0 chr13 5594623 5594825 -96278344 + MIR SINE MIR 2 228 -34 898 183 0 56 chr13 5595026 5595074 -96278095 - MER5A DNA MER1_type -19 170 121 1888 142 0 17 chr13 5595074 5595404 -96277765 + AluJb SINE Alu 1 325 0 898 183 0 56 chr13 5595404 5595533 -96277636 - MER5A DNA MER1_type -68 121 1 2045 170 18 0 chr13 5595600 5595930 -96277239 - MER1B DNA MER1_type -1 336 1 2810 100 47 7 chr13 5596346 5596776 -96276393 - L1PA13 LINE L1 0 6163 5717 471 170 0 80 chr13 5596776 5596876 -96276293 - MER20 DNA MER1_type -11 208 117 6730 101 16 0 chr13 5596891 5597917 -96275252 - L1P LINE L1 -3251 2895 1854 12541 106 12 12 chr13 5598018 5601069 -96272100 - L1P3 LINE L1 -3390 3071 1 273 353 59 0 chr13 5601093 5601178 -96271991 + MIR SINE MIR 34 123 -85 1845 136 14 32 chr13 5601504 5601850 -96271319 - Tigger7 DNA MER2_type 0 2587 2248 537 167 17 50 chr13 5601858 5601978 -96271191 - Tigger7 DNA MER2_type -589 116 1 1142 233 185 75 chr13 5602038 5602621 -96270548 + MLT1E2 LTR MaLR 4 622 -4 207 0 0 0 chr13 5602737 5602760 -96270409 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2135 112 3 0 chr13 5602762 5603049 -96270120 - AluSc SINE Alu -21 288 1 369 271 31 16 chr13 5604234 5604363 -96268806 - MLT1L LTR MaLR -17 598 468 951 302 211 34 chr13 5604741 5605665 -96267504 - L2 LINE L2 -480 2834 1747 1785 163 101 31 chr13 5606815 5607108 -96266061 + MER65C LTR ERV1 1 335 -126 2243 119 0 0 chr13 5607108 5607402 -96265767 - AluSx SINE Alu -14 298 5 1785 163 101 31 chr13 5607402 5607532 -96265637 + MER65C LTR ERV1 335 454 -7 2182 106 3 7 chr13 5608544 5608845 -96264324 + AluSx SINE Alu 1 300 -12 585 255 130 11 chr13 5609658 5609842 -96263327 + MIR SINE MIR 5 210 -52 1515 168 22 16 chr13 5611402 5611724 -96261445 - L1MB3 LINE L1 -1 6182 5859 25 31 0 0 chr13 5611991 5612023 -96261146 + AT_rich Low_complexity Low_complexity 1 32 0 278 336 54 0 chr13 5612043 5612192 -96260977 + MIR SINE MIR 56 212 -50 3585 107 2 4 chr13 5612263 5612775 -96260394 - MER9 LTR ERVK 0 511 1 2047 88 4 0 chr13 5612776 5613037 -96260132 - AluSc SINE Alu -47 262 1 36 0 0 0 chr13 5613364 5613400 -96259769 + AT_rich Low_complexity Low_complexity 1 36 0 469 179 83 36 chr13 5613440 5613608 -96259561 - MER104 DNA MER2_type -3 177 2 339 309 77 65 chr13 5613965 5614211 -96258958 - L2 LINE L2 -28 3285 3037 6565 91 27 21 chr13 5614214 5614400 -96258769 + L1MA2 LINE L1 5148 5332 -972 2071 141 0 16 chr13 5614400 5614705 -96258464 + AluSx SINE Alu 1 300 -12 6565 91 27 21 chr13 5614705 5615657 -96257512 + L1MA2 LINE L1 5332 6296 -8 913 225 10 0 chr13 5615743 5615943 -96257226 + L1MCa LINE L1 19 220 -6206 1894 82 0 0 chr13 5615943 5616176 -96256993 + AluSc SINE Alu 1 233 -76 207 0 0 0 chr13 5616188 5616211 -96256958 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1357 249 38 0 chr13 5616211 5616608 -96256561 + L1M4 LINE L1 3955 4366 -1780 2218 103 0 7 chr13 5616610 5616910 -96256259 + AluSx SINE Alu 1 298 -14 226 257 0 57 chr13 5617407 5617512 -96255657 + GA-rich Low_complexity Low_complexity 6 104 0 1129 143 38 5 chr13 5617736 5617946 -96255223 + MSTB1 LTR MaLR 192 408 -24 196 222 74 0 chr13 5617963 5618017 -96255152 + MIR SINE MIR 88 145 -117 1415 117 5 0 chr13 5619561 5619803 -96253366 - AluSg/x SINE Alu 0 327 85 2116 57 0 47 chr13 5619805 5620105 -96253064 - AluY SINE Alu -25 286 1 1091 123 0 0 chr13 5620463 5620609 -96252560 + AluSg/x SINE Alu 134 279 -31 24 0 0 0 chr13 5620935 5620959 -96252210 + AT_rich Low_complexity Low_complexity 1 24 0 410 311 129 13 chr13 5621238 5621463 -96251706 - MIR SINE MIR -6 256 6 189 0 0 0 chr13 5621662 5621683 -96251486 + (TA)n Simple_repeat Simple_repeat 1 21 0 2450 73 3 0 chr13 5621683 5621986 -96251183 - AluY SINE Alu -7 304 1 203 356 17 0 chr13 5622141 5622200 -96250969 - L2 LINE L2 -86 3186 3127 450 0 0 0 chr13 5623060 5623110 -96250059 + (TA)n Simple_repeat Simple_repeat 2 51 0 2333 78 3 0 chr13 5623110 5623404 -96249765 - AluY SINE Alu -16 295 1 203 356 17 0 chr13 5623559 5623618 -96249551 - L2 LINE L2 -86 3186 3127 207 0 0 0 chr13 5624462 5624485 -96248684 + (A)n Simple_repeat Simple_repeat 1 23 0 2440 52 0 3 chr13 5624486 5624776 -96248393 + AluY SINE Alu 1 289 -22 309 279 62 50 chr13 5624858 5625037 -96248132 + L1MDa LINE L1 1170 1350 -5190 495 201 117 13 chr13 5625040 5625194 -96247975 + L1MD3 LINE L1 6731 6900 -1095 2348 96 0 16 chr13 5625257 5625569 -96247600 + AluSx SINE Alu 1 307 -5 1078 194 91 142 chr13 5625657 5626126 -96247043 - Charlie2 DNA MER1_type -155 2707 2304 1102 144 0 0 chr13 5626126 5626314 -96246855 + L1MA5 LINE L1 6111 6298 -2 1078 194 91 142 chr13 5626314 5626744 -96246425 - Charlie2 DNA MER1_type -558 2304 1854 446 247 55 7 chr13 5626748 5626894 -96246275 - Charlie2 DNA MER1_type -2541 321 169 529 287 72 21 chr13 5626938 5627273 -96245896 + L1MEc LINE L1 44 395 -6001 1026 227 74 60 chr13 5627356 5627831 -96245338 - L1MC/D LINE L1 -743 5797 5608 311 221 0 117 chr13 5627955 5628118 -96245051 - L1MC/D LINE L1 -1116 5424 5281 1769 124 4 0 chr13 5628276 5628432 -96244737 - AluSx SINE Alu -32 280 121 243 0 0 0 chr13 5628432 5628459 -96244710 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1769 124 4 0 chr13 5628459 5628559 -96244610 - AluSx SINE Alu -191 121 23 594 311 125 22 chr13 5628668 5629501 -96243668 - L1MC/D LINE L1 -1437 5103 4184 1081 197 112 16 chr13 5629545 5629676 -96243493 - AluJo SINE Alu -39 273 156 189 0 0 0 chr13 5629676 5629697 -96243472 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1081 197 112 16 chr13 5629697 5629814 -96243355 - AluJo SINE Alu -156 156 1 266 306 32 35 chr13 5629987 5630301 -96242868 - L1MC/D LINE L1 -2515 4025 3713 21 0 0 0 chr13 5630788 5630809 -96242360 + AT_rich Low_complexity Low_complexity 1 21 0 729 316 128 46 chr13 5632012 5632348 -96240821 - L1M4 LINE L1 -1120 5026 4719 1996 159 3 0 chr13 5632348 5632638 -96240531 - AluSx SINE Alu -19 293 3 729 316 128 46 chr13 5632638 5632934 -96240235 - L1M4 LINE L1 -1427 4719 4342 186 43 0 0 chr13 5633025 5633048 -96240121 + (GA)n Simple_repeat Simple_repeat 1 23 0 639 144 0 136 chr13 5633050 5633182 -96239987 - FLAM_A SINE Alu -19 114 1 282 280 81 57 chr13 5633254 5633465 -96239704 - L1M4 LINE L1 -1956 4190 3975 2580 61 0 0 chr13 5633848 5634159 -96239010 - AluY SINE Alu 0 311 1 325 276 24 16 chr13 5634348 5634471 -96238698 - L1MC/D LINE L1 -3965 2575 2452 432 287 108 25 chr13 5634810 5635196 -96237973 - L1MEc LINE L1 -809 1767 1270 742 271 70 11 chr13 5635236 5635509 -96237660 - LTR68 LTR ERV1 -451 289 1 1238 180 54 0 chr13 5636283 5636522 -96236647 + L1PB4 LINE L1 5893 6144 -12 2272 126 0 0 chr13 5636929 5637238 -96235931 - AluSx SINE Alu -3 309 1 2890 68 20 5 chr13 5637500 5637898 -96235271 + MLT2A1 LTR ERVL 1 404 -40 243 200 0 15 chr13 5637899 5637964 -96235205 + (TA)n Simple_repeat Simple_repeat 1 64 0 341 47 0 0 chr13 5638014 5638057 -96235112 - MLT2A2 LTR ERVL 0 453 411 234 0 0 0 chr13 5638156 5638182 -96234987 + (TA)n Simple_repeat Simple_repeat 1 26 0 355 69 0 52 chr13 5638234 5638292 -96234877 + MLT2A1 LTR ERVL 399 453 0 353 74 19 0 chr13 5638292 5638346 -96234823 + HERVL-A1 LTR ERVL 1 55 -5599 * 22504 57 11 7 chr13 5638338 5640697 -96232472 + HERVL-A1 LTR ERVL 2677 5052 -602 2115 93 39 0 chr13 5640697 5640977 -96232192 + AluY SINE Alu 1 291 -20 22504 57 11 7 chr13 5640977 5641583 -96231586 + HERVL-A1 LTR ERVL 5052 5654 0 2831 65 48 83 chr13 5641583 5642043 -96231126 + MLT2A1 LTR ERVL 1 444 0 220 222 49 0 chr13 5642201 5642282 -96230887 + (TA)n Simple_repeat Simple_repeat 2 86 0 2193 112 0 7 chr13 5642789 5643093 -96230076 + AluSg SINE Alu 1 302 -8 572 222 8 0 chr13 5643943 5644060 -96229109 + FAM SINE Alu 31 148 -37 180 0 0 0 chr13 5644369 5644389 -96228780 + (T)n Simple_repeat Simple_repeat 1 20 0 2366 195 28 28 chr13 5645045 5645589 -96227580 - MER44D DNA MER2_type 0 605 7 2019 164 82 9 chr13 5645985 5646412 -96226757 - LTR32 LTR ERVL -5 466 9 237 274 62 60 chr13 5646585 5646747 -96226422 + MIR3 SINE MIR 15 180 -82 276 219 167 0 chr13 5648939 5649035 -96224134 - MIR SINE MIR -70 192 81 279 277 71 36 chr13 5649111 5649223 -96223946 - MIR SINE MIR -63 145 68 2375 95 0 0 chr13 5650445 5650751 -96222418 + AluY SINE Alu 3 308 -3 726 283 40 4 chr13 5651671 5651947 -96221222 + MER46C DNA MER2_type 1 286 -52 21 0 0 0 chr13 5653258 5653279 -96219890 + AT_rich Low_complexity Low_complexity 1 21 0 2554 62 7 3 chr13 5665265 5665574 -96207595 - AluY SINE Alu -1 310 1 21 0 0 0 chr13 5665632 5665653 -96207516 + AT_rich Low_complexity Low_complexity 1 21 0 1520 148 26 4 chr13 5665923 5666153 -96207016 - MER46A DNA MER2_type -1 235 1 213 278 33 56 chr13 5666320 5666410 -96206759 + MIR3 SINE MIR 73 160 -48 2270 100 0 0 chr13 5666892 5667192 -96205977 + AluSg1 SINE Alu 1 300 -9 245 167 0 45 chr13 5668763 5668829 -96204340 + GA-rich Low_complexity Low_complexity 2 64 0 27 0 0 0 chr13 5669378 5669405 -96203764 + AT_rich Low_complexity Low_complexity 1 27 0 2183 116 0 3 chr13 5669621 5669931 -96203238 - AluSg1 SINE Alu 0 309 1 27 0 0 0 chr13 5670696 5670723 -96202446 + AT_rich Low_complexity Low_complexity 1 27 0 268 341 81 32 chr13 5671048 5671171 -96201998 - L2 LINE L2 -28 3244 3116 24 53 0 0 chr13 5671478 5671516 -96201653 + AT_rich Low_complexity Low_complexity 1 38 0 192 311 100 33 chr13 5671720 5671810 -96201359 + MIR SINE MIR 97 192 -70 406 267 153 28 chr13 5672115 5672291 -96200878 - L2 LINE L2 -157 3115 2918 228 247 169 26 chr13 5672312 5672389 -96200780 - L2 LINE L2 -22 3250 3163 237 262 36 12 chr13 5672851 5672935 -96200234 - L2 LINE L2 -926 2388 2303 431 258 113 25 chr13 5673217 5673376 -96199793 - MIR SINE MIR -87 175 3 245 339 184 30 chr13 5673429 5673933 -96199236 - L2 LINE L2 -1112 2202 1621 2243 119 40 57 chr13 5674801 5675171 -96197998 + THE1B LTR MaLR 1 364 0 383 264 50 36 chr13 5675580 5675720 -96197449 + MARNA DNA Mariner 248 389 -197 1122 232 50 53 chr13 5675727 5676106 -96197063 + L1ME3A LINE L1 5788 6165 -5 31 82 0 0 chr13 5680814 5680887 -96192282 + AT_rich Low_complexity Low_complexity 1 73 0 369 296 64 0 chr13 5680931 5681056 -96192113 - MER94 DNA DNA 0 134 2 21 36 0 0 chr13 5682328 5682356 -96190813 + AT_rich Low_complexity Low_complexity 1 28 0 2179 110 0 31 chr13 5682377 5682695 -96190474 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr13 5682817 5682838 -96190331 + AT_rich Low_complexity Low_complexity 1 21 0 408 274 32 25 chr13 5683201 5683358 -96189811 - L1ME3 LINE L1 -7 6155 5998 2168 113 3 0 chr13 5684198 5684490 -96188679 - AluSq SINE Alu -12 301 9 2228 121 0 0 chr13 5684938 5685244 -96187925 + AluSq SINE Alu 1 306 -7 184 116 163 23 chr13 5685939 5685982 -96187187 + L2 LINE L2 3219 3267 -5 2419 105 0 0 chr13 5686025 5686329 -96186840 - AluSx SINE Alu -8 304 1 2257 100 3 0 chr13 5686332 5686652 -96186517 - AluSq SINE Alu 0 321 1 2259 90 7 0 chr13 5686679 5686969 -96186200 - AluSq SINE Alu -21 292 1 232 236 163 65 chr13 5687381 5687504 -96185665 - MIR3 SINE MIR -34 174 40 1960 97 0 0 chr13 5687776 5688024 -96185145 - AluSq SINE Alu -65 248 1 222 242 39 102 chr13 5689922 5690050 -96183119 + MIR3 SINE MIR 83 202 -6 2327 99 3 0 chr13 5690688 5691000 -96182169 - AluSq SINE Alu 0 313 1 369 109 0 0 chr13 5691158 5691213 -96181956 + (TTGG)n Simple_repeat Simple_repeat 1 55 0 2247 88 0 3 chr13 5691794 5692105 -96181064 - AluY SINE Alu 0 310 1 2243 104 0 3 chr13 5692652 5692951 -96180218 - AluY SINE Alu -13 298 1 2154 127 0 0 chr13 5692965 5693264 -96179905 - AluY SINE Alu -12 299 1 1430 208 20 60 chr13 5693372 5693772 -96179397 - L1MA10 LINE L1 -1 6333 5950 1902 129 0 85 chr13 5693787 5694128 -96179041 + AluSx SINE Alu 1 312 0 313 276 0 11 chr13 5694795 5694882 -96178287 + (CATA)n Simple_repeat Simple_repeat 3 88 0 233 111 22 89 chr13 5695066 5695111 -96178058 + Alu SINE Alu 85 126 -176 180 271 62 0 chr13 5695406 5695454 -96177715 + L2 LINE L2 3204 3254 -18 253 270 14 27 chr13 5695518 5695592 -96177577 + L2 LINE L2 2243 2315 -999 2173 73 12 76 chr13 5696602 5696931 -96176238 + AluSc SINE Alu 1 308 -1 324 303 119 88 chr13 5698087 5698800 -96174369 + L1M2 LINE L1 695 1429 -5420 184 257 57 43 chr13 5699289 5699359 -96173810 + L2 LINE L2 3116 3186 -86 1242 119 0 0 chr13 5699875 5700035 -96173134 + AluSx SINE Alu 1 160 -152 1814 154 48 3 chr13 5700076 5700408 -96172761 + L1MB7 LINE L1 5822 6168 -16 1743 113 132 4 chr13 5701582 5701847 -96171322 - AluSx SINE Alu -13 299 1 202 211 19 0 chr13 5702524 5702576 -96170593 + CT-rich Low_complexity Low_complexity 4 56 0 243 0 0 0 chr13 5703227 5703254 -96169915 + (TG)n Simple_repeat Simple_repeat 1 27 0 264 59 0 0 chr13 5703254 5703288 -96169881 + (GA)n Simple_repeat Simple_repeat 2 35 0 228 67 0 0 chr13 5703627 5703657 -96169512 + (TAA)n Simple_repeat Simple_repeat 1 30 0 480 272 63 32 chr13 5703669 5703827 -96169342 - MIR SINE MIR -18 244 82 276 264 136 16 chr13 5703889 5704014 -96169155 + L3 LINE CR1 1174 1313 -264 236 264 186 8 chr13 5704156 5704285 -96168884 - MIR SINE MIR -109 153 2 360 0 0 0 chr13 5704459 5704499 -96168670 + (CA)n Simple_repeat Simple_repeat 1 40 0 1304 114 5 0 chr13 5705245 5705429 -96167740 - AluSq SINE Alu 0 313 129 22 88 0 0 chr13 5705591 5705648 -96167521 + AT_rich Low_complexity Low_complexity 1 57 0 1278 134 4 78 chr13 5705887 5706119 -96167050 - AluJo SINE Alu -13 299 85 1021 150 17 11 chr13 5707903 5708083 -96165086 - Tigger1 DNA MER2_type 0 2418 2238 1068 70 0 0 chr13 5708083 5708212 -96164957 + AluY SINE Alu 1 129 -182 347 44 0 0 chr13 5708214 5708259 -96164910 + AluY SINE Alu 252 296 -6 * 11861 110 18 10 chr13 5708257 5708461 -96164708 - Tigger1 DNA MER2_type -631 1787 1586 2175 123 7 0 chr13 5708461 5708761 -96164408 - AluSq SINE Alu -11 302 1 11861 110 18 10 chr13 5708761 5710281 -96162888 - Tigger1 DNA MER2_type -832 1586 46 2515 55 0 10 chr13 5710281 5710590 -96162579 + AluY SINE Alu 1 306 -5 11861 110 18 10 chr13 5710590 5710609 -96162560 - Tigger1 DNA MER2_type -2372 46 29 647 76 0 0 chr13 5710963 5711055 -96162114 + L1P5 LINE L1 5405 5496 -658 22 56 0 0 chr13 5711333 5711369 -96161800 + AT_rich Low_complexity Low_complexity 1 36 0 312 145 0 0 chr13 5711716 5711786 -96161383 + Alu SINE Alu 248 299 -2 2421 70 6 13 chr13 5711847 5712160 -96161009 - AluY SINE Alu 0 311 1 1885 94 106 0 chr13 5712161 5712436 -96160733 - AluSp SINE Alu -9 304 1 2468 57 0 10 chr13 5714734 5715031 -96158138 + AluY SINE Alu 1 294 -17 2046 149 0 7 chr13 5715164 5715472 -96157697 - AluSx SINE Alu -6 306 1 2154 120 3 3 chr13 5715735 5716034 -96157135 - AluSp SINE Alu -14 299 1 2394 75 0 0 chr13 5716779 5717074 -96156095 + AluY SINE Alu 1 295 -16 2355 112 0 3 chr13 5717776 5718089 -96155080 - AluSx SINE Alu 0 312 1 827 227 92 14 chr13 5718384 5718666 -96154503 + MER113 DNA MER1_type? 28 331 -190 490 202 52 88 chr13 5718666 5718754 -96154415 + L1M4 LINE L1 3001 3091 -3055 2151 97 3 7 chr13 5718754 5719043 -96154126 + AluSx SINE Alu 1 288 -24 490 202 52 88 chr13 5719043 5719226 -96153943 + L1M4 LINE L1 3091 3262 -2884 2115 113 17 0 chr13 5719234 5719525 -96153644 + AluSq SINE Alu 3 298 -15 708 292 144 42 chr13 5719788 5720543 -96152626 + L1M4 LINE L1 4323 5186 -960 1905 150 27 0 chr13 5720543 5720836 -96152333 + AluJo SINE Alu 1 301 -11 708 292 144 42 chr13 5720836 5720980 -96152189 + L1M4 LINE L1 5186 5314 -832 1760 166 7 0 chr13 5721265 5721561 -96151608 - AluSx SINE Alu -14 298 1 280 280 50 38 chr13 5724956 5725210 -96147959 + ALR/Alpha Satellite centromeric 1 257 -1 234 314 13 32 chr13 5725225 5725381 -96147788 + ALR/Alpha Satellite centromeric 15 167 -5 2506 54 10 0 chr13 5725415 5725711 -96147458 - AluY SINE Alu -12 299 1 1615 227 55 23 chr13 5726270 5726706 -96146463 - MER31B LTR ERV1 -10 456 7 877 135 122 80 chr13 5726709 5726896 -96146273 - MER31B-int LTR ERV1 -17 4919 4718 2566 65 0 3 chr13 5726896 5727206 -96145963 + AluY SINE Alu 1 309 -2 877 135 122 80 chr13 5727206 5727255 -96145914 - MER31B-int LTR ERV1 -218 4718 4673 353 152 0 38 chr13 5727428 5727507 -96145662 - LTR37A LTR ERV1 -310 116 41 631 208 44 25 chr13 5727508 5727667 -96145502 - MER31B-int LTR ERV1 -657 4279 4118 10842 93 22 1 chr13 5727858 5730148 -96143021 - L1PA7 LINE L1 -5 6149 3815 6991 95 24 1 chr13 5730149 5731160 -96142009 + L1P LINE L1 2645 3678 -2468 794 195 95 0 chr13 5731165 5731204 -96141965 - MER31B-int LTR ERV1 -813 4123 4089 2263 98 3 10 chr13 5731204 5731500 -96141669 - AluSg SINE Alu -16 294 1 794 195 95 0 chr13 5731500 5731629 -96141540 - MER31B-int LTR ERV1 -847 4089 3939 230 203 63 51 chr13 5731629 5731708 -96141461 - MLT1A2 LTR MaLR -58 316 237 2369 144 103 135 chr13 5731708 5732201 -96140968 - MER31B-int LTR ERV1 -1078 3858 3396 2227 101 7 0 chr13 5732201 5732497 -96140672 - AluY SINE Alu -13 298 1 2369 144 103 135 chr13 5732497 5732766 -96140403 - MER31B-int LTR ERV1 -1540 3396 3120 1669 148 162 73 chr13 5732767 5733138 -96140031 - MER4A LTR ERV1 0 664 261 473 156 89 0 chr13 5733138 5733228 -96139941 - MER4A LTR ERV1 -566 98 1 1496 247 27 25 chr13 5733233 5733675 -96139494 - MER31B-int LTR ERV1 -1819 3117 2675 2562 61 0 0 chr13 5733676 5733987 -96139182 + AluY SINE Alu 1 311 0 1976 92 86 3 chr13 5734001 5734275 -96138894 + MER4E LTR ERV1 1 304 -462 180 0 0 0 chr13 5734275 5734295 -96138874 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 1976 92 86 3 chr13 5734295 5734312 -96138857 + MER4E LTR ERV1 304 317 -449 2634 147 40 4 chr13 5734312 5734618 -96138551 - LTR19A LTR ERV1 0 486 156 3562 111 24 29 chr13 5734618 5735168 -96138001 - LTR10B LTR ERV1 0 547 1 2634 147 40 4 chr13 5735168 5735330 -96137839 - LTR19A LTR ERV1 -330 156 1 2877 65 4 152 chr13 5735330 5735358 -96137811 + MER4E LTR ERV1 311 341 -425 1463 87 82 19 chr13 5735358 5735566 -96137603 - AluSc SINE Alu -12 297 77 2877 65 4 152 chr13 5735566 5735840 -96137329 + MER4E LTR ERV1 341 654 -112 2260 118 0 3 chr13 5735840 5736145 -96137024 - AluSq SINE Alu -9 304 1 2877 65 4 152 chr13 5736145 5736188 -96136981 + MER4E LTR ERV1 654 702 -64 2357 94 3 0 chr13 5736188 5736486 -96136683 - AluSp SINE Alu -14 299 1 2877 65 4 152 chr13 5736486 5736665 -96136504 + MER4E LTR ERV1 702 759 -7 5153 178 106 85 chr13 5736672 5738053 -96135116 - MER31B-int LTR ERV1 -2258 2678 1251 2239 123 0 0 chr13 5738053 5738354 -96134815 - AluSx SINE Alu -11 301 1 5153 178 106 85 chr13 5738354 5738731 -96134438 - MER31B-int LTR ERV1 -3685 1251 883 1613 221 75 107 chr13 5738738 5739459 -96133710 - MER31B-int LTR ERV1 -4197 739 42 2137 128 0 3 chr13 5739528 5739824 -96133345 - AluSx SINE Alu -17 295 1 1006 147 153 1 chr13 5739866 5740193 -96132976 - MER31B LTR ERV1 0 466 47 887 216 10 113 chr13 5740190 5740336 -96132833 - MER21B LTR ERV1 -601 262 159 * 2493 80 0 0 chr13 5740336 5740647 -96132522 + AluY SINE Alu 1 311 0 887 216 10 113 chr13 5740647 5740792 -96132377 - MER21B LTR ERV1 -704 159 1 376 262 24 0 chr13 5741686 5741770 -96131399 + MIR SINE MIR 20 105 -157 193 327 0 0 chr13 5741804 5741856 -96131313 + MIR SINE MIR 197 248 -14 226 253 93 47 chr13 5743185 5743335 -96129834 - L1MC5 LINE L1 -48 7913 7757 1511 173 63 70 chr13 5743717 5744018 -96129151 - AluJb SINE Alu -13 299 1 21 0 0 0 chr13 5744973 5744994 -96128175 + AT_rich Low_complexity Low_complexity 1 21 0 230 215 0 15 chr13 5745172 5745237 -96127932 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 22 35 0 0 chr13 5745318 5745347 -96127822 + AT_rich Low_complexity Low_complexity 1 29 0 2446 110 0 46 chr13 5745503 5745894 -96127275 - L1PB3 LINE L1 0 6154 5782 33 0 0 0 chr13 5745918 5745951 -96127218 + AT_rich Low_complexity Low_complexity 1 33 0 352 123 0 84 chr13 5745951 5746034 -96127135 - L1PB3 LINE L1 -360 5791 5727 1185 126 0 0 chr13 5746034 5746208 -96126961 - AluY SINE Alu -2 309 136 1248 88 57 0 chr13 5746208 5746400 -96126769 - L1PB3 LINE L1 -421 5733 5531 252 300 18 40 chr13 5746541 5746797 -96126372 + ALR/Alpha Satellite centromeric 1 250 -5 1064 41 0 0 chr13 5746831 5746953 -96126216 - AluY SINE Alu -12 299 178 340 260 41 37 chr13 5746960 5747590 -96125579 + ALR/Alpha Satellite centromeric 1 632 -23 234 265 48 42 chr13 5747699 5747865 -96125304 + ALR/Alpha Satellite centromeric 1 167 -5 414 256 20 20 chr13 5748139 5748349 -96124820 + ALR/Alpha Satellite centromeric 1 210 -40 2327 93 3 0 chr13 5748416 5748717 -96124452 + AluSp SINE Alu 1 302 -11 244 261 31 23 chr13 5748776 5748906 -96124263 + ALR/Alpha Satellite centromeric 1 131 -41 294 267 30 22 chr13 5748962 5749097 -96124072 + ALR/Alpha Satellite centromeric 15 150 -22 243 303 25 33 chr13 5750144 5750266 -96122903 - MIR SINE MIR -50 212 92 1550 157 6 52 chr13 5750345 5750531 -96122638 - MER4A LTR ERV1 -1 663 470 2345 103 3 0 chr13 5750531 5750833 -96122336 + AluSx SINE Alu 1 303 -9 1550 157 6 52 chr13 5750833 5751007 -96122162 - MER4A LTR ERV1 -194 470 261 510 124 90 0 chr13 5751007 5751096 -96122073 - MER4A LTR ERV1 -566 98 2 254 70 139 0 chr13 5753139 5753182 -96119987 + L1MB8 LINE L1 6127 6175 -3 2701 42 0 3 chr13 5753407 5753719 -96119450 - AluY SINE Alu 0 311 1 205 254 146 18 chr13 5753738 5753848 -96119321 - MIR SINE MIR -107 155 32 2065 121 0 0 chr13 5753995 5754276 -96118893 + AluSx SINE Alu 14 294 -18 360 127 27 136 chr13 5754431 5754541 -96118628 + MER53 DNA DNA 4 101 -88 183 247 137 14 chr13 5755128 5755201 -96117968 + MIR SINE MIR 124 205 -57 180 286 0 0 chr13 5755810 5755859 -96117310 + MIR SINE MIR 204 252 -10 278 339 65 11 chr13 5756023 5756209 -96116960 - MIR SINE MIR -28 234 39 180 0 0 0 chr13 5756803 5756823 -96116346 + (TTA)n Simple_repeat Simple_repeat 2 21 0 228 276 118 0 chr13 5758054 5758130 -96115039 + MIR SINE MIR 62 146 -62 203 176 137 0 chr13 5758714 5758765 -96114404 + MER91 DNA MER1_type 58 115 -75 191 320 27 0 chr13 5758971 5759046 -96114123 - L2 LINE L2 -5 3267 3191 221 125 21 21 chr13 5759118 5759166 -96114003 + (TA)n Simple_repeat Simple_repeat 1 48 0 1704 160 6 58 chr13 5759257 5759369 -96113800 + AluJo SINE Alu 1 117 -195 2165 138 3 0 chr13 5759369 5759667 -96113502 + AluSx SINE Alu 1 299 -13 1704 160 6 58 chr13 5759667 5759879 -96113290 + AluJo SINE Alu 117 308 -4 2917 185 9 30 chr13 5760249 5760807 -96112362 + MLT2B3 LTR ERVL 1 546 -8 2176 152 67 34 chr13 5761194 5761715 -96111454 + MLT2A2 LTR ERVL 1 552 -2 235 236 36 0 chr13 5761822 5761877 -96111292 + MIR SINE MIR 92 148 -114 2953 129 13 76 chr13 5761878 5762404 -96110765 + Tigger1 DNA MER2_type 2 494 -1924 4682 131 35 3 chr13 5762407 5763139 -96110030 + L1PA16 LINE L1 5387 6142 -24 3286 127 12 2 chr13 5763161 5763665 -96109504 + Tigger1 DNA MER2_type 480 988 -1430 1153 100 29 18 chr13 5763665 5763835 -96109334 + THE1C LTR MaLR 1 172 -203 672 248 7 26 chr13 5763857 5764010 -96109159 - MER45A DNA AcHobo -1 177 28 2434 96 3 0 chr13 5764241 5764553 -96108616 + AluSp SINE Alu 1 313 0 1072 129 17 11 chr13 5764553 5764731 -96108438 + AluSg/x SINE Alu 134 312 0 300 283 138 25 chr13 5765419 5765744 -96107425 - L1M4 LINE L1 -2931 3215 2854 266 247 39 0 chr13 5766031 5766108 -96107061 - L1M4 LINE L1 -3750 2396 2317 209 316 89 30 chr13 5766285 5766453 -96106716 - L2 LINE L2 -117 3196 3019 354 262 136 0 chr13 5766464 5766567 -96106602 - L2 LINE L2 -8 3305 3189 791 294 151 22 chr13 5766594 5767067 -96106102 - L2 LINE L2 -307 3006 2457 358 176 15 0 chr13 5767513 5767581 -96105588 + MLT2B3 LTR ERVL 3 71 -483 2009 160 134 46 chr13 5767680 5768112 -96105057 + MLT2B3 LTR ERVL 77 546 -8 385 281 69 44 chr13 5768203 5768292 -96104877 + ERVL LTR ERVL 5214 5310 -454 2466 126 28 11 chr13 5768292 5768650 -96104519 + THE1B LTR MaLR 1 364 0 385 281 69 44 chr13 5768650 5768720 -96104449 + ERVL LTR ERVL 5310 5377 -387 2352 214 105 2 chr13 5769009 5769523 -96103646 - MLT1F1 LTR MaLR 0 567 1 277 179 18 0 chr13 5769549 5769605 -96103564 + LTR67 LTR ERVL 6 62 -495 257 274 24 12 chr13 5769863 5769947 -96103222 + LTR67 LTR ERVL 433 517 -40 451 51 0 0 chr13 5770027 5770086 -96103083 - L1PA3 LINE L1 -1009 5137 5079 8262 18 1 0 chr13 5770086 5771089 -96102080 + L1PA3 LINE L1 5149 6152 -3 22 0 0 0 chr13 5771089 5771111 -96102058 + AT_rich Low_complexity Low_complexity 1 22 0 614 101 0 0 chr13 5771270 5771349 -96101820 + AluSg/x SINE Alu 218 296 -13 901 226 98 16 chr13 5771723 5772028 -96101141 - MLT2C1 LTR ERVL -6 391 62 2289 98 0 28 chr13 5772204 5772522 -96100647 - AluY SINE Alu -2 309 1 2343 104 13 0 chr13 5772709 5773017 -96100152 + AluSx SINE Alu 1 312 0 1060 167 118 29 chr13 5774295 5774540 -96098629 - AluJo SINE Alu -8 304 38 256 272 193 9 chr13 5774710 5774824 -96098345 + MIR SINE MIR 11 145 -117 367 203 163 65 chr13 5775964 5776087 -96097082 - MIR SINE MIR -82 180 46 406 216 26 37 chr13 5776382 5776514 -96096655 + L1MD3 LINE L1 5509 5627 -539 800 241 111 26 chr13 5776518 5776578 -96096591 + L1MD3 LINE L1 5943 5997 -1998 2213 119 0 0 chr13 5776578 5776872 -96096297 + AluSx SINE Alu 1 294 -18 800 241 111 26 chr13 5776872 5777179 -96095990 + L1MD3 LINE L1 5997 7995 0 4695 146 53 15 chr13 5778292 5779169 -96094000 + L1MC2 LINE L1 5198 6108 -236 2194 97 31 0 chr13 5779173 5779463 -96093706 + AluSx SINE Alu 1 299 -13 1190 250 3 20 chr13 5779606 5779783 -96093386 + L1ME LINE L1 5406 5578 -588 2500 76 0 0 chr13 5779783 5780087 -96093082 - AluY SINE Alu -7 304 1 1190 250 3 20 chr13 5780087 5780205 -96092964 + L1ME LINE L1 5578 5696 -470 1301 235 71 55 chr13 5780208 5780659 -96092510 - MER101 LTR ERV1 -4 470 13 272 150 0 0 chr13 5780662 5780702 -96092467 + L1ME LINE L1 5694 5733 -429 1841 168 42 81 chr13 5780954 5781360 -96091809 - MLT1B LTR MaLR 0 390 1 312 235 67 123 chr13 5781670 5781849 -96091320 - MIR SINE MIR -88 174 6 23 54 0 0 chr13 5782238 5782275 -96090894 + AT_rich Low_complexity Low_complexity 1 37 0 181 227 0 0 chr13 5782884 5782928 -96090241 - L2 LINE L2 0 3313 3270 384 234 76 145 chr13 5783623 5784161 -96089008 - L1M2 LINE L1 -5704 1145 645 23 0 0 0 chr13 5784284 5784307 -96088862 + GC_rich Low_complexity Low_complexity 1 23 0 679 296 98 22 chr13 5785179 5785793 -96087376 + L2 LINE L2 2524 3283 -30 721 263 52 73 chr13 5786018 5786097 -96087072 - L1ME3 LINE L1 -2 6658 6579 1533 171 90 31 chr13 5786097 5786419 -96086750 + MER2 DNA MER2_type 1 341 -3 721 263 52 73 chr13 5786419 5786666 -96086503 - L1ME3 LINE L1 -81 6579 6339 2380 60 0 0 chr13 5786677 5786962 -96086207 - AluY SINE Alu -3 308 24 582 231 172 14 chr13 5786962 5787252 -96085917 - L1ME3 LINE L1 -691 5971 5647 3892 238 53 34 chr13 5787352 5788599 -96084570 - L1ME3 LINE L1 -2679 3965 2743 2336 119 0 0 chr13 5788599 5788909 -96084260 - AluSg SINE Alu 0 310 1 3892 238 53 34 chr13 5788909 5789161 -96084008 - L1ME3 LINE L1 -3901 2743 2465 1997 135 3 10 chr13 5789161 5789458 -96083711 + AluSx SINE Alu 1 295 -17 3892 238 53 34 chr13 5789458 5789482 -96083687 - L1ME3 LINE L1 -4179 2465 2443 518 45 0 0 chr13 5789512 5789579 -96083590 - L1PB1 LINE L1 -1 6150 6084 2148 122 0 3 chr13 5789581 5789875 -96083294 - AluSx SINE Alu -10 302 10 416 170 160 10 chr13 5789882 5789982 -96083187 - LTR47A LTR ERVL -77 375 261 738 228 78 25 chr13 5790237 5790531 -96082638 - L1ME3 LINE L1 -5159 1666 1169 270 331 122 17 chr13 5790528 5790709 -96082460 - L1ME3 LINE L1 -6166 659 460 * 375 188 196 45 chr13 5790771 5790883 -96082286 + L2 LINE L2 3185 3313 0 2133 104 3 7 chr13 5791376 5791664 -96081505 - AluSq SINE Alu -13 300 14 435 294 64 64 chr13 5792429 5792924 -96080245 + L1M2 LINE L1 4915 5415 -780 2298 113 0 0 chr13 5792924 5793235 -96079934 + AluY SINE Alu 1 311 0 435 294 64 64 chr13 5793235 5793273 -96079896 + L1M2 LINE L1 5415 5452 -743 22 70 0 0 chr13 5794881 5794924 -96078245 + AT_rich Low_complexity Low_complexity 1 43 0 193 308 29 29 chr13 5795106 5795210 -96077959 - MIR SINE MIR -93 169 66 192 97 0 0 chr13 5797144 5797175 -96075994 + (CA)n Simple_repeat Simple_repeat 2 32 0 2027 130 33 0 chr13 5797917 5798216 -96074953 + AluSp SINE Alu 1 309 -4 2571 20 7 3 chr13 5798234 5798529 -96074640 + AluY SINE Alu 1 296 -15 2586 256 112 24 chr13 5798530 5799698 -96073471 + HAL1 LINE L1 1232 2502 -5 389 302 12 69 chr13 5801031 5801107 -96072062 - LTR33 LTR ERVL 0 521 442 2563 42 7 13 chr13 5801107 5801414 -96071755 - AluY SINE Alu -6 305 1 389 302 12 69 chr13 5801414 5801572 -96071597 - LTR33 LTR ERVL -79 442 295 2057 93 61 0 chr13 5802082 5802360 -96070809 - AluSc SINE Alu -14 295 1 2635 181 137 108 chr13 5802767 5803187 -96069982 + L1MC3 LINE L1 6662 7069 -716 368 247 11 0 chr13 5803187 5803276 -96069893 + MLT1F1 LTR MaLR 35 124 -443 2635 181 137 108 chr13 5803276 5803719 -96069450 + L1MC3 LINE L1 7069 7640 -145 1503 147 0 16 chr13 5804649 5804894 -96068275 + AluJo SINE Alu 60 300 -12 1984 99 53 11 chr13 5805339 5805623 -96067546 - AluSp SINE Alu -11 302 7 1066 98 0 0 chr13 5805631 5805763 -96067406 - AluSq/x SINE Alu -181 132 1 1743 241 67 30 chr13 5805881 5806541 -96066628 - L1MCc LINE L1 -5086 1337 654 262 176 20 0 chr13 5806645 5806696 -96066473 - MLT1A1 LTR MaLR -4 361 310 1704 187 10 0 chr13 5806698 5806992 -96066177 - AluJo SINE Alu -14 298 2 542 224 26 13 chr13 5806995 5807147 -96066022 - L1MCc LINE L1 -6246 177 24 1165 206 5 0 chr13 5809953 5810152 -96063017 + Tigger3(Golem) DNA MER2_type 1 200 -2829 224 250 0 0 chr13 5811933 5811989 -96061180 - MIR SINE MIR -172 90 35 983 185 16 11 chr13 5812998 5813182 -96059987 + AluJo SINE Alu 115 299 -13 326 281 248 0 chr13 5814130 5814283 -96058886 + MIR SINE MIR 28 218 -44 2109 107 0 14 chr13 5814453 5814742 -96058427 + AluSx SINE Alu 21 305 -7 181 280 65 19 chr13 5814887 5814994 -96058175 - L2 LINE L2 -913 2401 2290 185 304 74 45 chr13 5815290 5815533 -96057636 - L2 LINE L2 -1103 2211 1962 292 242 96 107 chr13 5815664 5815842 -96057327 - Charlie8 DNA MER1_type -2239 178 3 218 283 106 31 chr13 5816393 5816522 -96056647 + MIR SINE MIR 21 157 -66 2129 126 13 3 chr13 5817956 5818258 -96054911 - AluSq SINE Alu -8 305 1 2135 138 0 3 chr13 5818258 5818563 -96054606 - AluSx SINE Alu -6 306 3 2187 74 0 4 chr13 5818581 5818851 -96054318 - AluY SINE Alu -7 304 36 240 297 79 0 chr13 5818925 5819026 -96054143 - L2 LINE L2 -31 3241 3133 2635 215 16 23 chr13 5819956 5820514 -96052655 - MLT2B3 LTR ERVL 0 554 1 360 294 77 16 chr13 5820913 5821107 -96052062 + MIR SINE MIR 24 229 -33 195 263 0 18 chr13 5821618 5821675 -96051494 - L2 LINE L2 0 3313 3258 1921 133 25 3 chr13 5821790 5822076 -96051093 - AluSx SINE Alu -20 292 1 773 234 93 80 chr13 5822107 5822556 -96050613 - LTR26 LTR ERV1 -10 593 139 395 250 53 88 chr13 5822699 5822858 -96050311 - MER87 LTR ERV1 -393 148 1 536 224 255 19 chr13 5823797 5823958 -96049211 - MER63A DNA MER1_type 0 210 12 2348 101 0 3 chr13 5824259 5824555 -96048614 + AluSx SINE Alu 1 295 -17 542 277 36 54 chr13 5824810 5825034 -96048135 + Charlie8 DNA MER1_type 66 285 -2132 1130 134 76 54 chr13 5825562 5825786 -96047383 + MLT2B2 LTR ERVL 2 230 -285 542 167 9 0 chr13 5825786 5825894 -96047275 + CT-rich Low_complexity Low_complexity 1 109 0 1367 213 11 57 chr13 5825894 5826202 -96046967 + MLT2B3 LTR ERVL 217 509 -45 423 0 0 0 chr13 5826202 5826249 -96046920 + (CA)n Simple_repeat Simple_repeat 2 48 0 1367 213 11 57 chr13 5826249 5826293 -96046876 + MLT2B3 LTR ERVL 509 553 -1 452 244 34 0 chr13 5826302 5826421 -96046748 - MIR SINE MIR -70 192 70 452 352 86 12 chr13 5826471 5826798 -96046371 - L3 LINE CR1 -244 1333 983 446 258 39 16 chr13 5826836 5826964 -96046205 - MER94 DNA DNA -3 131 1 236 210 122 117 chr13 5827204 5827409 -96045760 + MLT1H LTR MaLR 130 335 -214 523 267 62 0 chr13 5827708 5827903 -96045266 - MIR SINE MIR 0 262 56 257 281 123 48 chr13 5828067 5828213 -96044956 + MIR SINE MIR 20 176 -86 312 319 211 0 chr13 5828736 5828940 -96044229 + MIR SINE MIR 2 248 -14 1559 268 136 23 chr13 5829218 5829532 -96043637 + L1MC4 LINE L1 6254 6531 -1511 2211 169 5 23 chr13 5829532 5829929 -96043240 + MLT1B LTR MaLR 1 390 0 1559 268 136 23 chr13 5829929 5830340 -96042829 + L1MC4 LINE L1 6531 8025 -17 2479 130 46 30 chr13 5830373 5830812 -96042357 + L1MB2 LINE L1 5521 5966 -217 1766 159 42 89 chr13 5830812 5830915 -96042254 + MER47A DNA MER2_type 1 107 -2216 2001 94 100 60 chr13 5830915 5831265 -96041904 + THE1B LTR MaLR 1 364 0 1766 159 42 89 chr13 5831265 5831544 -96041625 + MER47A DNA MER2_type 107 365 -1 910 167 25 20 chr13 5831544 5831742 -96041427 + L1MB2 LINE L1 5964 6162 -9 227 263 0 62 chr13 5831946 5832026 -96041143 + L2 LINE L2 3186 3260 -12 235 266 21 43 chr13 5833141 5833235 -96039934 - MIR3 SINE MIR -54 154 63 53 49 0 0 chr13 5834092 5834173 -96038996 + AT_rich Low_complexity Low_complexity 1 81 0 350 304 23 84 chr13 5837208 5837422 -96035747 - L2 LINE L2 -430 2884 2684 916 208 23 32 chr13 5839308 5839529 -96033640 + MER20 DNA MER1_type 1 219 0 2242 117 0 3 chr13 5840402 5840710 -96032459 + AluSx SINE Alu 1 307 -5 427 280 35 55 chr13 5840789 5840989 -96032180 + MIR SINE MIR 1 196 -66 479 250 26 0 chr13 5840991 5841107 -96032062 + MER5A DNA MER1_type 1 119 -70 260 226 32 0 chr13 5841126 5841188 -96031981 + MIR SINE MIR 189 252 -10 1850 83 0 0 chr13 5841193 5841421 -96031748 + AluY SINE Alu 83 310 -1 2289 105 3 0 chr13 5841790 5842095 -96031074 + AluSc SINE Alu 1 306 -3 603 146 48 37 chr13 5842446 5842926 -96030243 + L1MC2 LINE L1 6142 6615 -1170 1847 156 78 23 chr13 5842926 5843272 -96029897 - MLT1A1 LTR MaLR 0 365 1 603 146 48 37 chr13 5843272 5843405 -96029764 + L1MC2 LINE L1 6615 7763 -22 390 21 0 0 chr13 5843437 5843484 -96029685 + (GA)n Simple_repeat Simple_repeat 2 48 0 808 262 41 22 chr13 5843968 5844235 -96028934 + MLT1L LTR MaLR 5 276 -339 3985 110 169 44 chr13 5844373 5845103 -96028066 + LTR12 LTR ERV1 5 825 -1 37367 86 8 8 chr13 5845104 5850082 -96023087 + HERV17 LTR ERV1 17 4954 -1960 629 131 214 16 chr13 5850075 5850327 -96022842 + HERV17 LTR ERV1 703 1141 -5755 * 7028 100 72 59 chr13 5850323 5852701 -96020468 + HERV17 LTR ERV1 504 2438 0 369 289 83 0 chr13 5852841 5852962 -96020207 + MLT1L LTR MaLR 483 613 -2 1717 108 0 12 chr13 5853291 5853532 -96019637 + AluSc SINE Alu 1 238 -71 218 225 0 0 chr13 5853543 5853583 -96019586 + polypurine Low_complexity Low_complexity 4 43 0 479 244 41 16 chr13 5853738 5853861 -96019308 - L1ME2 LINE L1 -21 6143 6018 807 259 44 14 chr13 5853940 5854242 -96018927 - L1ME2 LINE L1 -180 6482 6236 487 353 77 0 chr13 5854242 5854514 -96018655 - LTR16A LTR ERVL 0 450 158 2916 228 33 41 chr13 5854624 5855340 -96017829 - L1ME2 LINE L1 -420 6242 5536 1688 180 28 0 chr13 5855340 5855629 -96017540 - AluJo SINE Alu -14 298 2 2916 228 33 41 chr13 5855629 5856318 -96016851 - L1ME2 LINE L1 -1126 5536 4843 242 222 0 32 chr13 5856322 5856385 -96016784 + CT-rich Low_complexity Low_complexity 3 63 0 1670 259 27 13 chr13 5856401 5856927 -96016242 - L1ME2 LINE L1 -2040 4604 4072 225 100 0 0 chr13 5857008 5857038 -96016131 + Alu SINE Alu 1 30 -269 1454 81 0 11 chr13 5857138 5857323 -96015846 - AluY SINE Alu -128 183 1 5528 219 50 65 chr13 5857699 5857757 -96015412 - L1MB7 LINE L1 -16 6562 6505 2164 119 7 0 chr13 5857757 5858052 -96015117 + AluSq SINE Alu 1 297 -16 5528 219 50 65 chr13 5858052 5859200 -96013969 - L1MB7 LINE L1 -73 6505 5341 786 197 0 14 chr13 5859200 5859342 -96013827 - FRAM SINE Alu -14 162 23 5528 219 50 65 chr13 5859342 5859494 -96013675 - L1MB7 LINE L1 -1237 5341 5188 1938 154 7 13 chr13 5859494 5859799 -96013370 + AluSq SINE Alu 1 303 -10 5528 219 50 65 chr13 5859799 5861507 -96011662 - L1MB7 LINE L1 -1390 5188 3456 2442 96 3 0 chr13 5861507 5861819 -96011350 - AluSp SINE Alu 0 313 1 2382 75 3 28 chr13 5861820 5862139 -96011030 - AluY SINE Alu 0 311 1 5528 219 50 65 chr13 5862139 5862972 -96010197 - L1MB7 LINE L1 -3121 3457 2606 23 0 0 0 chr13 5863032 5863055 -96010114 + AT_rich Low_complexity Low_complexity 1 23 0 5912 238 42 26 chr13 5863063 5864389 -96008780 - L1ME2 LINE L1 -4097 2728 1425 1896 145 38 30 chr13 5864389 5864761 -96008408 + THE1C LTR MaLR 1 375 0 5912 238 42 26 chr13 5864761 5865974 -96007195 - L1ME2 LINE L1 -5400 1425 10 518 87 0 0 chr13 5866542 5866611 -96006558 + AluSc SINE Alu 176 244 -65 5725 107 55 31 chr13 5866749 5866881 -96006288 - MER4-int LTR ERV1 -228 6370 6243 2883 9 0 3 chr13 5866881 5867200 -96005969 - AluYb8 SINE Alu 0 318 1 5725 107 55 31 chr13 5867200 5868120 -96005049 - MER4-int LTR ERV1 -355 6243 5290 2160 135 3 3 chr13 5868120 5868432 -96004737 + AluSx SINE Alu 1 312 0 2133 123 7 0 chr13 5868521 5868813 -96004356 - AluSx SINE Alu -18 294 1 21 36 0 0 chr13 5869016 5869044 -96004125 + AT_rich Low_complexity Low_complexity 1 28 0 525 268 81 78 chr13 5869109 5869650 -96003519 + HAL1 LINE L1 1198 1740 -767 2235 110 7 0 chr13 5870403 5870695 -96002474 + AluSx SINE Alu 1 294 -18 291 239 43 43 chr13 5870713 5870830 -96002339 + HAL1b LINE L1 795 911 -437 735 243 55 20 chr13 5870838 5871093 -96002076 + L1MB8 LINE L1 5915 6178 0 2456 71 0 0 chr13 5871108 5871402 -96001767 + AluY SINE Alu 1 294 -17 1978 105 35 0 chr13 5872327 5872510 -96000659 - AluSq SINE Alu 0 313 118 348 24 0 0 chr13 5872510 5872551 -96000618 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1978 105 35 0 chr13 5872551 5872673 -96000496 - AluSq SINE Alu -195 118 2 381 303 41 0 chr13 5873955 5874077 -95999092 - MIR SINE MIR -94 168 42 304 261 22 11 chr13 5874082 5874174 -95998995 + MIR SINE MIR 167 259 -3 2392 78 0 0 chr13 5874249 5874542 -95998627 + AluY SINE Alu 1 293 -18 405 271 42 14 chr13 5875165 5875309 -95997860 + MIR SINE MIR 113 260 -2 637 216 0 0 chr13 5875548 5875664 -95997505 + FLAM_C SINE Alu 1 116 -27 579 285 104 10 chr13 5876565 5876758 -95996411 + MIR SINE MIR 26 236 -26 1587 159 100 3 chr13 5876906 5877215 -95995954 - MER2 DNA MER2_type 0 345 7 2314 94 3 0 chr13 5877332 5877631 -95995538 + AluSx SINE Alu 1 300 -12 319 211 253 11 chr13 5878025 5878120 -95995049 + L2 LINE L2 3192 3309 -4 233 294 48 87 chr13 5878255 5878381 -95994788 - MIR SINE MIR -76 132 15 21 57 0 0 chr13 5879625 5879660 -95993509 + AT_rich Low_complexity Low_complexity 1 35 0 2513 66 0 0 chr13 5879683 5879984 -95993185 - AluY SINE Alu -10 301 1 309 232 0 89 chr13 5880637 5880749 -95992420 + MIR SINE MIR 79 180 -82 267 276 238 9 chr13 5880735 5880840 -95992329 - MIR3 SINE MIR -40 168 40 * 2357 77 3 3 chr13 5882051 5882350 -95990819 + AluY SINE Alu 1 299 -12 804 161 0 0 chr13 5882616 5882740 -95990429 - FRAM SINE Alu -16 160 37 939 183 31 101 chr13 5883228 5883953 -95989216 - MER4A LTR ERV1 0 695 1 272 356 44 0 chr13 5884053 5884143 -95989026 - L2 LINE L2 -31 3241 3148 2330 93 3 0 chr13 5884946 5885237 -95987932 + AluSp SINE Alu 1 292 -21 1590 185 49 0 chr13 5885867 5886154 -95987015 + AluJo SINE Alu 1 301 -11 211 260 0 84 chr13 5886453 5886562 -95986607 - L2 LINE L2 -1 3312 3185 191 173 19 0 chr13 5887153 5887205 -95985964 + A-rich Low_complexity Low_complexity 2 54 0 258 32 0 0 chr13 5887283 5887314 -95985855 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 143 0 0 chr13 5887404 5887446 -95985723 + AluS SINE Alu 23 64 -239 240 160 51 40 chr13 5887561 5887736 -95985433 + (CA)n Simple_repeat Simple_repeat 1 177 0 418 147 55 16 chr13 5887800 5888246 -95984923 + (CA)n Simple_repeat Simple_repeat 1 463 0 197 180 52 23 chr13 5888525 5888697 -95984472 + (CA)n Simple_repeat Simple_repeat 2 178 0 396 183 40 23 chr13 5888724 5889033 -95984136 + (CA)n Simple_repeat Simple_repeat 1 314 0 339 243 49 131 chr13 5889197 5889526 -95983643 - L1MC/D LINE L1 -2151 5657 5356 316 121 17 0 chr13 5889588 5889646 -95983523 - AluSp/q SINE Alu -4 299 241 2393 52 0 58 chr13 5890110 5890440 -95982729 - AluY SINE Alu 0 311 1 2358 35 0 67 chr13 5891093 5891406 -95981763 + AluY SINE Alu 1 292 -19 613 163 24 0 chr13 5891407 5891530 -95981639 + L1MA5 LINE L1 6169 6294 -6 1990 255 46 28 chr13 5891549 5892303 -95980866 - L1ME1 LINE L1 -6 6160 5393 3785 93 8 0 chr13 5893076 5893604 -95979565 - L1PB1 LINE L1 0 6151 5620 26 0 0 0 chr13 5893613 5893639 -95979530 + AT_rich Low_complexity Low_complexity 1 26 0 236 248 124 39 chr13 5894780 5894909 -95978260 - Charlie8 DNA MER1_type -2140 277 138 2340 61 41 0 chr13 5894982 5895275 -95977894 + AluY SINE Alu 1 305 -6 26 0 0 0 chr13 5896270 5896296 -95976873 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr13 5896309 5896333 -95976836 + AT_rich Low_complexity Low_complexity 1 24 0 201 231 31 108 chr13 5896568 5896633 -95976536 + L2 LINE L2 3213 3272 0 237 287 96 17 chr13 5896845 5896960 -95976209 + MIR SINE MIR 118 241 -21 700 179 40 104 chr13 5897159 5897360 -95975809 - MIR SINE MIR -8 254 67 294 256 78 0 chr13 5897401 5897491 -95975678 - MIR SINE MIR -36 226 130 863 171 91 6 chr13 5898662 5898838 -95974331 + MIR SINE MIR 44 234 -28 24 0 0 0 chr13 5899070 5899094 -95974075 + AT_rich Low_complexity Low_complexity 1 24 0 2300 103 3 0 chr13 5899427 5899729 -95973440 - AluSq SINE Alu -10 303 1 2090 147 0 22 chr13 5900265 5900584 -95972585 + AluSx SINE Alu 1 312 0 256 224 41 61 chr13 5900599 5900697 -95972472 + L3b LINE CR1 1352 1447 -136 2307 112 0 3 chr13 5900811 5901116 -95972053 - AluSc SINE Alu -2 307 4 21081 121 15 86 chr13 5902904 5907264 -95965905 + L1P LINE L1 12 4064 -2082 1601 69 0 0 chr13 5907271 5907474 -95965695 + L1PA7 LINE L1 5934 6136 -18 2482 102 65 105 chr13 5908407 5909037 -95964132 - MER4B LTR ERV1 0 779 3 3437 184 144 4 chr13 5909273 5909607 -95963562 + L1MC1 LINE L1 21 307 -6119 185 0 0 39 chr13 5909607 5909633 -95963536 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3437 184 144 4 chr13 5909633 5910123 -95963046 + L1MC1 LINE L1 307 961 -5465 9361 202 68 13 chr13 5910152 5915216 -95957953 + L1MC1 LINE L1 1281 6597 -16 26 0 0 0 chr13 5915437 5915463 -95957706 + AT_rich Low_complexity Low_complexity 1 26 0 1986 122 4 0 chr13 5916246 5916517 -95956652 + AluSx SINE Alu 1 272 -40 183 80 0 0 chr13 5916517 5916542 -95956627 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 468 258 88 25 chr13 5917456 5917615 -95955554 - MIR SINE MIR -35 227 59 441 169 36 26 chr13 5917683 5917853 -95955316 + MER3 DNA MER1_type 6 209 0 227 200 44 0 chr13 5917816 5917861 -95955308 - MER3 DNA MER1_type -123 86 40 * 294 95 0 0 chr13 5920204 5920246 -95952923 + (CA)n Simple_repeat Simple_repeat 2 43 0 1602 208 128 2 chr13 5920295 5920709 -95952460 - MER31B LTR ERV1 0 466 1 184 224 122 0 chr13 5920916 5920965 -95952204 - L2 LINE L2 -49 3223 3169 251 225 12 38 chr13 5920976 5921056 -95952113 + L1MC/D LINE L1 5824 5901 -1907 594 224 122 0 chr13 5922349 5922496 -95950673 - MIR SINE MIR -49 213 49 230 262 0 16 chr13 5922594 5922655 -95950514 + CT-rich Low_complexity Low_complexity 2 61 0 222 37 0 0 chr13 5923837 5923864 -95949305 + (TA)n Simple_repeat Simple_repeat 1 27 0 599 297 82 0 chr13 5923879 5924111 -95949058 + MIR SINE MIR 5 255 -7 323 283 99 13 chr13 5925380 5925532 -95947637 + L1M LINE L1 5264 5428 -734 626 290 63 90 chr13 5925536 5925655 -95947514 - L2 LINE L2 0 3313 3192 207 0 0 0 chr13 5925655 5925678 -95947491 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2207 99 17 3 chr13 5925680 5925973 -95947196 - AluSp SINE Alu -16 297 1 626 290 63 90 chr13 5925973 5926361 -95946808 - L2 LINE L2 -122 3191 2817 338 324 179 14 chr13 5926783 5926990 -95946179 - MIR SINE MIR -10 252 12 4607 152 29 51 chr13 5927191 5927856 -95945313 + L1MB8 LINE L1 5099 5726 -452 1413 152 105 99 chr13 5927856 5928218 -95944951 + MLT1A1 LTR MaLR 2 365 0 4607 152 29 51 chr13 5928218 5928662 -95944507 + L1MB8 LINE L1 5726 6178 0 558 292 22 15 chr13 5929569 5929774 -95943395 + MIR SINE MIR 56 262 0 399 316 7 15 chr13 5929972 5930108 -95943061 - MIR SINE MIR -72 190 56 1559 150 8 26 chr13 5930794 5931061 -95942108 + AluJb SINE Alu 39 300 -12 2043 110 3 23 chr13 5931217 5931517 -95941652 + AluSg SINE Alu 1 294 -16 32 0 0 0 chr13 5931518 5931550 -95941619 + AT_rich Low_complexity Low_complexity 1 32 0 5128 159 69 33 chr13 5932041 5933435 -95939734 - L1MB2 LINE L1 -1 6170 4693 614 286 71 96 chr13 5933741 5933848 -95939321 - L1ME4a LINE L1 -74 6047 5939 2368 87 0 3 chr13 5933848 5934146 -95939023 - AluSq SINE Alu -16 297 1 614 286 71 96 chr13 5934146 5934418 -95938751 - L1ME4a LINE L1 -182 5939 5662 2566 56 0 0 chr13 5934418 5934722 -95938447 - AluY SINE Alu -7 304 1 614 286 71 96 chr13 5934722 5935005 -95938164 - L1ME4a LINE L1 -459 5662 5380 25 0 0 0 chr13 5935006 5935031 -95938138 + AT_rich Low_complexity Low_complexity 1 25 0 324 0 0 0 chr13 5935282 5935318 -95937851 + (TG)n Simple_repeat Simple_repeat 1 36 0 216 158 0 0 chr13 5937862 5937900 -95935269 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 290 304 39 10 chr13 5938689 5938791 -95934378 + MIR SINE MIR 38 142 -120 2021 153 3 13 chr13 5939117 5939430 -95933739 + AluJb SINE Alu 1 310 -2 22 35 0 0 chr13 5940217 5940246 -95932923 + AT_rich Low_complexity Low_complexity 1 29 0 1502 163 98 14 chr13 5942207 5942483 -95930686 - AluJb SINE Alu -13 299 1 1689 224 26 5 chr13 5942713 5943142 -95930027 + L1 LINE L1 4899 5336 -810 219 253 23 23 chr13 5943959 5944046 -95929123 + CT-rich Low_complexity Low_complexity 5 91 0 355 245 67 92 chr13 5944831 5945414 -95927755 + HSREP522 Satellite telomeric 1 568 -87 233 219 256 0 chr13 5946812 5946894 -95926275 - MIR SINE MIR -88 174 72 823 256 81 42 chr13 5947100 5947459 -95925710 + L1ME LINE L1 5420 5792 -329 243 343 56 9 chr13 5948720 5948828 -95924341 - L2 LINE L2 -43 3229 3117 917 177 29 34 chr13 5948843 5949018 -95924151 + FAM SINE Alu 1 174 -11 1186 220 59 54 chr13 5949018 5949409 -95923760 - MLT2C2 LTR ERVL -71 393 1 363 191 143 38 chr13 5949501 5949606 -95923563 + L1MC1 LINE L1 6092 6207 -126 232 211 0 35 chr13 5950041 5950098 -95923071 - THE1C LTR MaLR 0 428 374 1949 78 67 11 chr13 5950098 5950387 -95922782 - AluY SINE Alu 0 304 1 1438 111 136 76 chr13 5950387 5950550 -95922619 - THE1C LTR MaLR -40 335 183 1943 157 0 3 chr13 5950550 5950844 -95922325 - AluSx SINE Alu -19 293 1 1438 111 136 76 chr13 5950844 5950996 -95922173 - THE1C LTR MaLR -192 183 1 869 194 62 44 chr13 5951162 5951389 -95921780 - L1MC1 LINE L1 -25 6308 6078 193 327 84 28 chr13 5951613 5951720 -95921449 + L2 LINE L2 3146 3258 -14 1982 183 127 44 chr13 5953521 5954001 -95919168 - MLT2B1 LTR ERVL 0 520 1 261 343 135 6 chr13 5954326 5954504 -95918665 - L2 LINE L2 -862 2452 2252 476 324 143 5 chr13 5955074 5955284 -95917885 + L3 LINE CR1 401 639 -938 531 152 9 38 chr13 5956897 5957002 -95916167 - L1MB3 LINE L1 -7 6176 6075 1736 83 5 0 chr13 5957489 5957707 -95915462 + AluSq SINE Alu 1 219 -94 740 125 0 0 chr13 5957708 5957831 -95915338 + AluSg/x SINE Alu 189 311 0 2090 141 0 0 chr13 5957891 5958181 -95914988 + AluSx SINE Alu 1 290 -22 278 255 255 13 chr13 5960433 5960586 -95912583 + MIR SINE MIR 59 248 -14 3367 208 72 45 chr13 5960921 5961467 -95911702 + L1ME2 LINE L1 4916 5446 -718 1925 140 3 38 chr13 5961467 5961781 -95911388 - AluJb SINE Alu -3 309 7 3367 208 72 45 chr13 5961781 5962425 -95910744 + L1ME2 LINE L1 5446 6155 -9 1128 124 75 0 chr13 5963708 5963894 -95909275 + LTR9B LTR ERV1 445 644 0 1038 47 16 0 chr13 5963936 5964063 -95909106 + HUERS-P3b LTR ERV1 2958 3086 -2131 457 102 0 0 chr13 5964061 5964120 -95909049 + HUERS-P3b LTR ERV1 6086 6144 -1274 * 1253 142 10 0 chr13 5964118 5964315 -95908854 + HUERS-P3b LTR ERV1 8720 8918 -1 3413 119 35 16 chr13 5964315 5964862 -95908307 + LTR9B LTR ERV1 1 557 -87 386 273 284 10 chr13 5966274 5966468 -95906701 - MIR SINE MIR -14 248 2 1491 111 79 14 chr13 5967702 5967918 -95905251 - MER30 DNA MER1_type 0 230 1 22 0 0 0 chr13 5967918 5967940 -95905229 + AT_rich Low_complexity Low_complexity 1 22 0 1717 175 7 13 chr13 5967945 5968248 -95904921 - AluJb SINE Alu -11 301 1 648 260 68 17 chr13 5968274 5968451 -95904718 + MER5A DNA MER1_type 1 186 -3 217 250 94 122 chr13 5969285 5969465 -95903704 - L2 LINE L2 -2 3270 3096 275 157 131 16 chr13 5969528 5969689 -95903480 + MER20 DNA MER1_type 1 219 0 242 232 29 0 chr13 5969931 5970000 -95903169 + LTR67 LTR ERVL 484 554 -3 5151 111 9 5 chr13 5970590 5971328 -95901841 + L1PA13 LINE L1 5423 6163 0 674 159 0 66 chr13 5972330 5972481 -95900688 + L1MB4 LINE L1 6039 6179 -1 246 289 46 30 chr13 5973966 5974128 -95899041 + MIR SINE MIR 36 252 -10 1914 134 0 7 chr13 5975137 5975441 -95897728 + AluSx SINE Alu 1 302 0 1063 224 8 4 chr13 5975507 5975752 -95897417 - AluSq SINE Alu -14 299 54 3116 230 109 52 chr13 5976415 5977567 -95895602 + L2 LINE L2 1175 2406 -908 1441 153 145 0 chr13 5977567 5977822 -95895347 - AluJo SINE Alu -20 292 1 3116 230 109 52 chr13 5977822 5977930 -95895239 + L2 LINE L2 2406 2506 -808 2000 246 135 20 chr13 5977972 5978704 -95894465 + L1ME3 LINE L1 5345 6160 -2 289 262 83 48 chr13 5978718 5978863 -95894306 - L2 LINE L2 -10 3303 3154 345 308 45 32 chr13 5979043 5979199 -95893970 - L2 LINE L2 -483 2831 2674 23 0 0 0 chr13 5979501 5979524 -95893645 + AT_rich Low_complexity Low_complexity 1 23 0 1256 206 4 24 chr13 5980909 5981157 -95892012 + AluJb SINE Alu 38 280 -32 197 178 22 0 chr13 5981214 5981259 -95891910 + (TA)n Simple_repeat Simple_repeat 2 47 0 2017 138 7 0 chr13 5981301 5981605 -95891564 + AluSx SINE Alu 1 306 -6 184 311 87 55 chr13 5982411 5982700 -95890469 + L2 LINE L2 2196 2493 -821 428 242 30 20 chr13 5983149 5983248 -95889921 + L2 LINE L2 3194 3293 -20 2617 155 29 9 chr13 5983694 5984113 -95889056 + MSTA LTR MaLR 2 428 0 2153 111 9 29 chr13 5984156 5984472 -95888697 - AluSx SINE Alu 0 312 3 2398 72 3 0 chr13 5984486 5984790 -95888379 - AluY SINE Alu -6 305 1 399 284 0 0 chr13 5985988 5986083 -95887086 - MER103 DNA DNA -52 114 20 1057 227 95 122 chr13 5986803 5987429 -95885740 - L1ME3A LINE L1 -205 5965 5334 1972 134 25 0 chr13 5987457 5987734 -95885435 + AluSx SINE Alu 1 284 -28 2421 145 6 6 chr13 5987836 5988201 -95884968 + MER47A DNA MER2_type 2 366 0 2303 110 0 7 chr13 5988246 5988556 -95884613 + AluSx SINE Alu 1 308 -4 2117 127 0 0 chr13 5989633 5989933 -95883236 - AluSg SINE Alu -10 300 1 1041 150 0 24 chr13 5989935 5990102 -95883067 - AluSg/x SINE Alu -16 294 132 631 209 32 73 chr13 5990164 5990384 -95882785 - L2 LINE L2 0 3313 3103 294 337 0 12 chr13 5991362 5991445 -95881724 + L3 LINE CR1 1387 1468 -109 304 271 22 66 chr13 5991666 5991847 -95881322 + L2 LINE L2 2704 2876 -438 4553 183 87 13 chr13 5991971 5992991 -95880178 - L1MC3 LINE L1 0 7785 6690 2145 112 14 0 chr13 5994837 5995132 -95878037 + AluSx SINE Alu 1 299 -13 200 306 14 56 chr13 5995191 5995263 -95877906 - MIR SINE MIR -145 117 49 356 300 121 14 chr13 5996806 5997029 -95876140 + MIR SINE MIR 1 247 -15 457 303 0 16 chr13 5997106 5997228 -95875941 + L2 LINE L2 3194 3313 0 187 176 0 0 chr13 5997234 5997268 -95875901 + L2 LINE L2 3280 3313 0 2272 109 3 6 chr13 5998035 5998347 -95874822 - AluSq SINE Alu -2 311 1 3083 109 78 52 chr13 5998804 5999319 -95873850 - MER1A DNA MER1_type -1 528 1 292 319 83 35 chr13 6000696 6000840 -95872329 + MIR3 SINE MIR 1 151 -57 1538 206 99 0 chr13 6002279 6002634 -95870535 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 6002795 6002817 -95870352 + AT_rich Low_complexity Low_complexity 1 22 0 2161 131 0 6 chr13 6003735 6004048 -95869121 + AluSx SINE Alu 1 311 -1 1397 202 24 14 chr13 6006461 6006748 -95866421 - AluJo SINE Alu -22 290 1 384 187 121 22 chr13 6006854 6006945 -95866224 + Tigger2 DNA MER2_type 1 100 -2618 829 212 0 50 chr13 6006947 6007126 -95866043 - MER8 DNA MER2_type -62 177 8 1500 175 93 10 chr13 6007168 6007459 -95865710 + MER44D DNA MER2_type 20 604 -5 195 69 0 0 chr13 6008461 6008490 -95864679 + (TC)n Simple_repeat Simple_repeat 1 29 0 1789 234 84 44 chr13 6008645 6009214 -95863955 + MLT1E LTR MaLR 1 592 -1 2442 78 0 7 chr13 6009347 6009643 -95863526 - AluSg SINE Alu -16 294 1 28 29 0 0 chr13 6009648 6009683 -95863486 + AT_rich Low_complexity Low_complexity 1 35 0 567 236 102 77 chr13 6009735 6010048 -95863121 + MLT1J LTR MaLR 3 323 -188 1575 158 12 71 chr13 6010325 6010647 -95862522 + AluJb SINE Alu 1 303 -9 1659 156 35 38 chr13 6011654 6012024 -95861145 + MSTC LTR MaLR 18 426 -2 494 271 98 33 chr13 6012091 6012305 -95860864 + L2 LINE L2 2827 3054 -259 351 0 0 0 chr13 6013422 6013461 -95859708 + (CA)n Simple_repeat Simple_repeat 2 40 0 494 138 0 0 chr13 6014772 6014859 -95858310 - L1MB7 LINE L1 -19 6165 6079 4539 185 67 21 chr13 6014869 6016675 -95856494 - L1MB7 LINE L1 -21 6163 4441 2255 121 0 13 chr13 6016675 6016989 -95856180 - AluSq SINE Alu -3 310 1 4539 185 67 21 chr13 6016989 6017000 -95856169 - L1MB7 LINE L1 -1743 4441 4432 423 0 0 0 chr13 6017000 6017047 -95856122 + (TG)n Simple_repeat Simple_repeat 2 48 0 4539 185 67 21 chr13 6017047 6017294 -95855875 - L1MB7 LINE L1 -1752 4432 3999 204 67 0 0 chr13 6017601 6017631 -95855538 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 446 233 36 131 chr13 6018644 6018919 -95854250 - MER112 DNA MER1_type -11 249 1 359 174 47 12 chr13 6019394 6019480 -95853689 + L1MD3 LINE L1 7829 7917 -78 22 0 0 0 chr13 6020214 6020236 -95852933 + AT_rich Low_complexity Low_complexity 1 22 0 324 267 158 17 chr13 6020619 6020739 -95852430 - MIR SINE MIR 0 262 126 380 341 82 27 chr13 6021021 6021352 -95851817 + L1 LINE L1 4081 4429 -1717 40546 55 4 6 chr13 6021363 6027531 -95845638 + L1PA5 LINE L1 1 6154 0 1671 177 0 30 chr13 6027839 6028138 -95845031 + AluJb SINE Alu 10 299 -13 887 180 34 26 chr13 6029077 6029299 -95843870 - MLT1A1 LTR MaLR -2 430 162 287 25 25 0 chr13 6029299 6029339 -95843830 + (GA)n Simple_repeat Simple_repeat 1 41 0 421 160 21 11 chr13 6029366 6029460 -95843709 - MLT1A1 LTR MaLR -213 152 58 306 269 97 21 chr13 6029939 6030084 -95843085 - L1ME4a LINE L1 0 6121 5966 726 300 83 24 chr13 6030193 6030566 -95842603 - MLT1I LTR MaLR -14 395 1 1360 142 15 0 chr13 6030804 6031001 -95842168 - AluJo SINE Alu -112 200 1 5412 247 113 38 chr13 6031790 6032273 -95840896 + L2 LINE L2 201 646 -2668 1630 206 100 30 chr13 6032273 6032744 -95840425 + MLT1D LTR MaLR 1 504 -1 5412 247 113 38 chr13 6032744 6034296 -95838873 + L2 LINE L2 646 2408 -906 1454 153 145 0 chr13 6034296 6034551 -95838618 - AluJo SINE Alu -20 292 1 5412 247 113 38 chr13 6034551 6034659 -95838510 + L2 LINE L2 2408 2506 -808 1683 246 135 20 chr13 6034701 6035433 -95837736 + L1ME3 LINE L1 5345 6160 -2 302 262 83 48 chr13 6035447 6035592 -95837577 - L2 LINE L2 -10 3303 3154 343 308 45 32 chr13 6035772 6035928 -95837241 - L2 LINE L2 -483 2831 2674 23 0 0 0 chr13 6036230 6036253 -95836916 + AT_rich Low_complexity Low_complexity 1 23 0 1287 206 4 24 chr13 6037638 6037886 -95835283 + AluJb SINE Alu 38 280 -32 197 178 22 0 chr13 6037943 6037988 -95835181 + (TA)n Simple_repeat Simple_repeat 2 47 0 2026 138 7 0 chr13 6038030 6038334 -95834835 + AluSx SINE Alu 1 306 -6 180 311 87 55 chr13 6039141 6039430 -95833739 + L2 LINE L2 2196 2493 -821 431 242 30 20 chr13 6039879 6039978 -95833191 + L2 LINE L2 3194 3293 -20 2421 155 29 9 chr13 6040424 6040843 -95832326 + MSTA LTR MaLR 2 428 0 2160 111 9 29 chr13 6040886 6041202 -95831967 - AluSx SINE Alu 0 312 3 2375 72 3 0 chr13 6041216 6041520 -95831649 - AluY SINE Alu -6 305 1 358 284 0 0 chr13 6042718 6042813 -95830356 - MER103 DNA DNA -52 114 20 846 229 86 99 chr13 6043549 6044152 -95829017 - L1ME4a LINE L1 -219 5951 5350 1977 134 25 0 chr13 6044187 6044464 -95828705 + AluSx SINE Alu 1 284 -28 2235 145 6 6 chr13 6044566 6044931 -95828238 + MER47A DNA MER2_type 2 366 0 2052 113 7 23 chr13 6044976 6045307 -95827862 + AluSx SINE Alu 1 312 0 356 278 106 39 chr13 6045307 6045638 -95827531 - L1ME4a LINE L1 -1088 5058 4706 768 318 10 26 chr13 6046776 6047078 -95826091 + MLT1K LTR MaLR 288 584 -4 281 308 101 40 chr13 6047184 6047382 -95825787 + MIR SINE MIR 41 250 -12 224 296 0 14 chr13 6047420 6047491 -95825678 + MIR SINE MIR 187 256 -6 2304 67 27 3 chr13 6048290 6048587 -95824582 + AluY SINE Alu 1 304 -7 441 0 0 0 chr13 6048611 6048660 -95824509 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr13 6049942 6049970 -95823199 + AT_rich Low_complexity Low_complexity 1 28 0 2502 56 0 3 chr13 6049990 6050293 -95822876 - AluY SINE Alu -9 302 1 251 252 26 126 chr13 6051176 6051245 -95821924 + MIR SINE MIR 82 130 -132 2334 96 3 0 chr13 6051245 6051537 -95821632 - AluSg SINE Alu -17 293 1 251 252 26 126 chr13 6051537 6051618 -95821551 + MIR SINE MIR 130 217 -45 21 36 0 0 chr13 6051940 6051968 -95821201 + AT_rich Low_complexity Low_complexity 1 28 0 1017 215 94 97 chr13 6053180 6053928 -95819241 + LTR8A LTR ERV1 1 727 0 299 285 138 79 chr13 6053930 6054299 -95818870 - L2 LINE L2 0 3272 2882 938 187 20 5 chr13 6054370 6054573 -95818596 + MER72 LTR ERV1 1 206 -516 543 189 0 19 chr13 6054599 6054705 -95818464 + L1MD2 LINE L1 6243 6346 -13 709 169 4 9 chr13 6055193 6055444 -95817725 + MER2 DNA MER2_type 1 284 -61 21 0 0 0 chr13 6055475 6055496 -95817673 + AT_rich Low_complexity Low_complexity 1 21 0 806 175 7 28 chr13 6055515 6055658 -95817511 - FRAM SINE Alu -36 140 1 453 169 0 0 chr13 6055658 6055729 -95817440 + MER2 DNA MER2_type 275 345 0 2436 61 0 17 chr13 6056158 6056455 -95816714 - AluY SINE Alu -19 292 1 484 241 71 71 chr13 6056771 6057000 -95816169 + MIR SINE MIR 25 262 0 1123 149 44 6 chr13 6057212 6057393 -95815776 - AluSg/x SINE Alu -14 296 109 956 149 51 17 chr13 6057493 6057668 -95815501 - AluSx SINE Alu -129 183 3 21 36 0 0 chr13 6057671 6057699 -95815470 + AT_rich Low_complexity Low_complexity 1 28 0 963 289 61 42 chr13 6058057 6058646 -95814523 - L1MCa LINE L1 -4865 2076 1477 734 275 143 13 chr13 6058818 6059203 -95813966 - L1MCa LINE L1 -5963 460 26 195 42 0 0 chr13 6059271 6059295 -95813874 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 641 203 165 21 chr13 6059420 6059657 -95813512 + MER31A LTR ERV1 215 485 0 22 0 0 0 chr13 6059956 6059978 -95813191 + AT_rich Low_complexity Low_complexity 1 22 0 2064 136 27 54 chr13 6060154 6060196 -95812973 - MER57A LTR ERV1 -1 402 360 1916 125 0 30 chr13 6060196 6060492 -95812677 + AluSx SINE Alu 1 287 -25 258 32 0 0 chr13 6060499 6060530 -95812639 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2064 136 27 54 chr13 6060530 6060885 -95812284 - MER57A LTR ERV1 -49 354 8 538 230 59 54 chr13 6060937 6061159 -95812010 + MER46C DNA MER2_type 3 225 -113 743 182 97 32 chr13 6061197 6061622 -95811547 + LTR54B LTR ERV1 2 490 -8 266 262 36 12 chr13 6061629 6061713 -95811456 + MER46C DNA MER2_type 252 337 -1 21 0 0 0 chr13 6061760 6061781 -95811388 + AT_rich Low_complexity Low_complexity 1 21 0 2281 117 0 3 chr13 6061788 6062095 -95811074 + AluSx SINE Alu 1 306 -6 269 220 110 9 chr13 6062372 6062481 -95810688 - MER103 DNA DNA -45 121 2 1083 173 15 10 chr13 6063703 6063905 -95809264 + MER2 DNA MER2_type 8 210 -135 660 83 0 0 chr13 6064951 6065035 -95808134 - AluSg/x SINE Alu -16 294 211 262 275 266 9 chr13 6065035 6065144 -95808025 + MER5A DNA MER1_type 49 185 -4 191 324 15 0 chr13 6065088 6065156 -95808013 - MER5A DNA MER1_type -114 75 7 * 243 288 45 0 chr13 6065342 6065408 -95807761 + MIR SINE MIR 124 192 -70 267 216 13 150 chr13 6065509 6065608 -95807561 - MER94 DNA DNA -2 132 60 1603 196 4 0 chr13 6065608 6065889 -95807280 + AluJo SINE Alu 1 282 -30 267 216 13 150 chr13 6065889 6065942 -95807227 - MER94 DNA DNA -74 60 1 208 191 48 0 chr13 6065943 6065985 -95807184 - MIR SINE MIR -2 260 217 337 280 115 37 chr13 6068103 6068670 -95804499 + L1ME2 LINE L1 2322 2932 -3214 1718 139 57 36 chr13 6068903 6069235 -95803934 - MER2 DNA MER2_type 0 345 7 1960 273 76 56 chr13 6069243 6069759 -95803410 + L1ME2 LINE L1 3221 3725 -2421 1753 130 4 0 chr13 6069759 6070012 -95803157 + AluSx SINE Alu 49 302 -10 1960 273 76 56 chr13 6070012 6071288 -95801881 + L1ME2 LINE L1 3725 5049 -1097 283 153 15 4 chr13 6071294 6071497 -95801672 + AluJo SINE Alu 1 295 -6 751 193 0 15 chr13 6071716 6071851 -95801318 + FLAM_A SINE Alu 1 133 0 645 244 141 53 chr13 6071919 6072410 -95800759 + L1ME2 LINE L1 5406 5938 -224 369 302 173 56 chr13 6072597 6072938 -95800231 - L3 LINE CR1 -118 1459 1079 1488 210 89 23 chr13 6073462 6073891 -95799278 - MSTB2 LTR MaLR 0 457 1 2422 123 40 38 chr13 6074057 6074480 -95798689 + MSTC LTR MaLR 1 424 -4 655 287 171 6 chr13 6074682 6075016 -95798153 - L3 LINE CR1 -523 1054 666 30 0 0 0 chr13 6075290 6075320 -95797849 + AT_rich Low_complexity Low_complexity 1 30 0 219 354 23 31 chr13 6076510 6076640 -95796529 + L2 LINE L2 3180 3308 -5 2138 116 14 0 chr13 6077077 6077371 -95795798 - AluSx SINE Alu -9 303 6 317 172 62 0 chr13 6077990 6078054 -95795115 + MIR SINE MIR 123 190 -72 21 0 0 0 chr13 6079988 6080009 -95793160 + AT_rich Low_complexity Low_complexity 1 21 0 215 222 0 79 chr13 6080127 6080190 -95792979 - MIR SINE MIR -7 255 198 1898 155 0 13 chr13 6080200 6080503 -95792666 - AluJb SINE Alu -13 299 1 548 282 74 28 chr13 6080576 6080792 -95792377 - MIR SINE MIR -25 237 12 195 339 89 40 chr13 6080819 6080943 -95792226 + MIR3 SINE MIR 14 143 -65 398 276 125 0 chr13 6081318 6081470 -95791699 + MIR SINE MIR 92 262 0 462 254 8 16 chr13 6082373 6082495 -95790674 - L2 LINE L2 0 3313 3193 320 125 18 0 chr13 6084320 6084376 -95788793 - LTR54 LTR ERV1 -38 472 416 25 0 0 0 chr13 6084389 6084414 -95788755 + AT_rich Low_complexity Low_complexity 1 25 0 180 236 83 42 chr13 6084698 6084770 -95788399 + L2 LINE L2 3198 3272 0 2400 73 7 7 chr13 6084873 6085175 -95787994 + AluSg SINE Alu 1 302 -8 268 302 95 28 chr13 6085709 6085961 -95787208 - L2 LINE L2 -624 2690 2422 1018 219 73 0 chr13 6086376 6086623 -95786546 + L1MCa LINE L1 19 283 -6143 509 247 84 6 chr13 6087415 6087581 -95785588 - MER97a DNA MER1_type? -715 179 1 422 252 53 27 chr13 6087669 6087852 -95785317 - L1ME LINE L1 -464 5657 5473 800 110 31 16 chr13 6087960 6088087 -95785082 - AluSg/x SINE Alu 0 312 184 191 255 0 20 chr13 6088375 6088426 -95784743 - L2 LINE L2 -580 2734 2685 1683 114 82 7 chr13 6088492 6088798 -95784371 - MER46B DNA MER2_type -1 235 32 243 0 0 0 chr13 6088879 6088906 -95784263 + (ATG)n Simple_repeat Simple_repeat 1 27 0 511 286 81 5 chr13 6088907 6089092 -95784077 - MIR SINE MIR -5 257 59 181 249 45 141 chr13 6089940 6090117 -95783052 - MIR SINE MIR -50 212 53 * 308 299 62 10 chr13 6090105 6090202 -95782967 + MIR SINE MIR 47 148 -114 234 325 0 0 chr13 6093520 6093600 -95779569 + L1MC4 LINE L1 7190 7269 -773 933 202 16 21 chr13 6093738 6093926 -95779243 - AluJo SINE Alu -7 305 119 381 255 35 80 chr13 6094004 6094467 -95778702 + L1MC5 LINE L1 7333 7774 -187 6858 133 44 15 chr13 6094469 6095613 -95777556 + Tigger3b DNA MER2_type 2 1184 -1844 2252 102 0 23 chr13 6095613 6095916 -95777253 - AluSg SINE Alu -14 296 1 6858 133 44 15 chr13 6095916 6095966 -95777203 + Tigger3b DNA MER2_type 1184 1231 0 253 323 0 0 chr13 6095980 6096045 -95777124 + polypurine Low_complexity Low_complexity 2 66 0 2254 125 0 0 chr13 6096278 6096589 -95776580 + AluSq SINE Alu 1 311 -2 24 32 0 0 chr13 6097899 6097930 -95775239 + AT_rich Low_complexity Low_complexity 1 31 0 2275 101 0 0 chr13 6098102 6098390 -95774779 - AluSx SINE Alu -24 288 1 21 82 0 0 chr13 6098495 6098544 -95774625 + AT_rich Low_complexity Low_complexity 1 49 0 491 245 19 57 chr13 6098556 6098715 -95774454 - L1ME1 LINE L1 -1 6183 6031 183 343 49 10 chr13 6099289 6099391 -95773778 - L2 LINE L2 -221 3092 2987 189 226 38 0 chr13 6099474 6099527 -95773642 - L2 LINE L2 -620 2694 2640 27 29 0 0 chr13 6099634 6099668 -95773501 + AT_rich Low_complexity Low_complexity 1 34 0 2194 133 0 10 chr13 6101822 6102124 -95771045 + AluSx SINE Alu 1 299 -13 2034 132 10 10 chr13 6104046 6104342 -95768827 - AluSx SINE Alu -16 296 1 1219 208 148 0 chr13 6104491 6104809 -95768360 - MER47A DNA MER2_type 0 366 2 789 264 74 4 chr13 6105074 6105305 -95767864 - MIR SINE MIR -4 258 12 2747 89 14 5 chr13 6106949 6107319 -95765850 + THE1C LTR MaLR 3 375 0 1986 138 10 0 chr13 6107923 6108213 -95764956 - AluSx SINE Alu -19 293 1 1029 296 101 41 chr13 6108329 6108965 -95764204 + L2 LINE L2 2085 2758 -556 9424 205 25 18 chr13 6108973 6110124 -95763045 - L1MB4 LINE L1 0 6180 5038 1660 176 47 4 chr13 6110124 6110402 -95762767 - AluJo SINE Alu -22 290 1 9424 205 25 18 chr13 6110402 6112742 -95760427 - L1MB4 LINE L1 -1142 5038 2669 2308 157 38 8 chr13 6112995 6113472 -95759697 + L1MB5 LINE L1 5684 6174 0 189 0 0 0 chr13 6114552 6114573 -95758596 + (T)n Simple_repeat Simple_repeat 1 21 0 211 378 12 24 chr13 6114624 6114706 -95758463 + MIR SINE MIR 20 100 -162 297 278 156 0 chr13 6115548 6115638 -95757531 - L2 LINE L2 0 3313 3210 279 253 153 63 chr13 6115654 6116009 -95757160 - MLT1J2 LTR MaLR -3 488 125 448 251 60 51 chr13 6116097 6116512 -95756657 - L2 LINE L2 -125 3188 2230 218 350 87 0 chr13 6117428 6117531 -95755638 + MIR SINE MIR 35 146 -62 293 47 23 0 chr13 6118460 6118503 -95754666 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 1333 179 22 65 chr13 6120159 6120407 -95752762 + MER33 DNA MER1_type 2 234 -2351 724 191 125 0 chr13 6120407 6120559 -95752610 - FAM SINE Alu 0 175 5 1333 179 22 65 chr13 6120559 6120634 -95752535 + MER33 DNA MER1_type 234 311 -13 226 260 213 7 chr13 6120966 6121116 -95752053 - MIR SINE MIR -80 182 2 2436 141 47 30 chr13 6122062 6122212 -95750957 - Tigger2a DNA MER2_type -2274 434 288 2298 99 3 0 chr13 6122212 6122515 -95750654 - AluSg SINE Alu -6 304 1 2436 141 47 30 chr13 6122515 6122791 -95750378 - Tigger2a DNA MER2_type -2420 288 1 21 71 0 0 chr13 6123559 6123601 -95749568 + AT_rich Low_complexity Low_complexity 1 42 0 13645 166 23 3 chr13 6123758 6127070 -95746099 - L1PA14 LINE L1 -4 6157 2790 1420 175 72 0 chr13 6127437 6127700 -95745469 - MER7A DNA MER2_type -65 281 2 4408 206 70 38 chr13 6128188 6129387 -95743782 - L1MC4 LINE L1 0 8042 6806 237 83 0 0 chr13 6129762 6129798 -95743371 + (TG)n Simple_repeat Simple_repeat 1 36 0 219 69 0 0 chr13 6129832 6129861 -95743308 + (TA)n Simple_repeat Simple_repeat 2 30 0 1413 161 4 11 chr13 6130263 6130524 -95742645 - L1MB3 LINE L1 -8 6175 5917 23 33 0 0 chr13 6132149 6132179 -95740990 + AT_rich Low_complexity Low_complexity 1 30 0 693 143 0 24 chr13 6132896 6133022 -95740147 - FRAM SINE Alu -5 171 49 774 93 0 70 chr13 6134458 6134587 -95738582 + FRAM SINE Alu 43 162 -14 493 168 8 130 chr13 6138911 6139042 -95734127 + FLAM_A SINE Alu 8 122 -20 4450 117 92 47 chr13 6139705 6140492 -95732677 - LTR12 LTR ERV1 0 826 5 1964 199 95 28 chr13 6140507 6141074 -95732095 - pTR5 LTR ERV1 -1093 1345 741 29 0 0 0 chr13 6141182 6141211 -95731958 + AT_rich Low_complexity Low_complexity 1 29 0 1314 113 128 93 chr13 6141211 6141468 -95731701 - AluSx SINE Alu -23 289 24 1483 185 14 20 chr13 6142369 6142661 -95730508 + AluJo SINE Alu 1 290 -22 428 232 143 76 chr13 6144078 6144483 -95728686 + MER4C LTR ERV1 1 608 -91 4049 96 9 5 chr13 6144483 6145035 -95728134 + MER41A LTR ERV1 1 554 0 3954 141 61 21 chr13 6145035 6145733 -95727436 + MER41A-int LTR ERV1 1 633 -5313 * 10627 107 35 21 chr13 6145705 6148765 -95724404 + MER41A-int LTR ERV1 2606 5944 -2 4053 112 4 0 chr13 6148765 6149317 -95723852 + MER41A LTR ERV1 1 554 0 298 160 85 53 chr13 6149317 6149411 -95723758 + MER4C LTR ERV1 367 463 -2 6373 138 41 65 chr13 6149739 6150081 -95723088 + Tigger3b DNA MER2_type 1 350 -2678 2392 91 0 0 chr13 6150081 6150378 -95722791 + AluSx SINE Alu 2 298 -14 6373 138 41 65 chr13 6150378 6150783 -95722386 + Tigger3b DNA MER2_type 350 763 -2265 2390 92 0 0 chr13 6150783 6151077 -95722092 + AluY SINE Alu 1 294 -17 6373 138 41 65 chr13 6151077 6151584 -95721585 + Tigger3b DNA MER2_type 763 1226 -5 237 300 100 15 chr13 6151648 6151778 -95721391 - MIR SINE MIR -56 206 66 180 319 0 14 chr13 6151812 6151881 -95721288 - MIR3 SINE MIR -129 79 12 2201 159 54 7 chr13 6152148 6152556 -95720613 + L1MB3 LINE L1 5749 6175 -8 229 145 15 0 chr13 6152680 6152722 -95720447 - MIR3 SINE MIR -54 154 111 2142 121 0 0 chr13 6153096 6153376 -95719793 + AluSx SINE Alu 1 280 -32 287 147 15 147 chr13 6153836 6153904 -95719265 + AluS SINE Alu 2 60 -248 421 202 101 8 chr13 6154130 6154249 -95718920 + L1MA10 LINE L1 6205 6334 0 2495 61 0 0 chr13 6154405 6154700 -95718469 + AluY SINE Alu 1 295 -16 387 263 94 58 chr13 6154703 6155227 -95717942 + L1MEc LINE L1 2049 2560 -3655 3315 157 52 7 chr13 6155246 6155846 -95717323 + LTR24C LTR ERV1 1 627 -8 313 290 109 11 chr13 6155925 6156108 -95717061 + L1M4 LINE L1 4577 4777 -1369 3932 91 28 2 chr13 6156110 6156650 -95716519 - MER41A LTR ERV1 0 554 1 761 259 20 51 chr13 6156750 6157105 -95716064 + L1M4 LINE L1 4918 5261 -885 183 80 0 0 chr13 6157328 6157353 -95715816 + (TA)n Simple_repeat Simple_repeat 1 25 0 2650 18 0 0 chr13 6157352 6157660 -95715509 - AluY SINE Alu 0 308 1 354 231 88 27 chr13 6158721 6158868 -95714301 + MER45A DNA AcHobo 3 158 -20 1167 144 0 21 chr13 6159828 6160016 -95713153 + Tigger1 DNA MER2_type 22 205 -2213 1252 169 5 5 chr13 6160026 6160239 -95712930 - AluJo SINE Alu -15 297 85 260 250 0 0 chr13 6160239 6160287 -95712882 - AluJb SINE Alu -52 250 203 * 13460 116 54 30 chr13 6160260 6161159 -95712010 + Tigger1 DNA MER2_type 165 1041 -1377 2381 77 3 7 chr13 6161159 6161459 -95711710 - AluSc SINE Alu -10 299 1 13460 116 54 30 chr13 6161459 6162418 -95710751 + Tigger1 DNA MER2_type 1041 2087 -331 2342 92 0 7 chr13 6162418 6162713 -95710456 - AluSx SINE Alu -19 293 1 13460 116 54 30 chr13 6162713 6163054 -95710115 + Tigger1 DNA MER2_type 2087 2418 0 184 366 108 48 chr13 6163665 6163998 -95709171 - L3b LINE CR1 -85 1498 1146 240 262 48 48 chr13 6165321 6165405 -95707764 - L2 LINE L2 -1 3271 3188 306 247 37 0 chr13 6165669 6165750 -95707419 + MIR SINE MIR 69 152 -110 652 210 120 30 chr13 6165754 6165921 -95707248 + AluJo SINE Alu 2 183 -129 204 320 0 13 chr13 6165925 6166000 -95707169 + MIR SINE MIR 189 262 0 459 295 29 6 chr13 6166706 6166879 -95706290 - L1MB3 LINE L1 0 6183 6007 506 97 138 0 chr13 6166963 6167086 -95706083 - L1PA8 LINE L1 -1 6153 5991 1221 175 185 9 chr13 6167129 6167412 -95705757 - L1MA5A LINE L1 -10 6287 5943 364 289 75 23 chr13 6169240 6169413 -95703756 - MIR SINE MIR -79 183 2 977 221 35 0 chr13 6169598 6169797 -95703372 + MER63A DNA MER1_type 5 210 0 750 259 4 98 chr13 6169824 6169889 -95703280 + MIR SINE MIR 22 92 -170 1882 110 8 4 chr13 6169889 6170153 -95703016 - AluSx SINE Alu -27 285 21 750 259 4 98 chr13 6170153 6170342 -95702827 + MIR SINE MIR 92 252 -10 184 135 19 19 chr13 6170450 6170502 -95702667 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 799 276 103 49 chr13 6170613 6170799 -95702370 + L2 LINE L2 2921 3095 -218 1534 180 48 45 chr13 6170799 6171110 -95702059 + AluJo SINE Alu 1 312 0 799 276 103 49 chr13 6171110 6171292 -95701877 + L2 LINE L2 3095 3309 -4 2271 92 3 0 chr13 6171496 6171778 -95701391 - AluSp SINE Alu -25 288 6 2409 268 79 56 chr13 6171916 6172678 -95700491 - MLT-int LTR MaLR -376 1359 581 192 40 0 0 chr13 6172693 6172718 -95700451 + (CA)n Simple_repeat Simple_repeat 2 26 0 263 253 0 63 chr13 6172726 6172821 -95700348 + L1MC4 LINE L1 6615 6703 -1339 208 218 0 73 chr13 6172821 6172876 -95700293 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 242 140 0 105 chr13 6172880 6172937 -95700232 - L1MC4 LINE L1 -1340 6702 6652 244 276 46 11 chr13 6172959 6173046 -95700123 - L1MC4 LINE L1 -1339 6703 6614 516 225 0 0 chr13 6173047 6173176 -95699993 + (TA)n Simple_repeat Simple_repeat 2 130 0 1549 197 10 10 chr13 6174291 6174601 -95698568 + AluJo SINE Alu 1 310 -2 1647 137 27 57 chr13 6174604 6174904 -95698265 + AluSq SINE Alu 1 291 -22 4728 165 45 49 chr13 6174906 6175962 -95697207 + L1 LINE L1 3889 4940 -1206 198 191 0 0 chr13 6176065 6176107 -95697062 + GA-rich Low_complexity Low_complexity 4 45 0 1231 56 0 0 chr13 6176171 6176313 -95696856 + AluY SINE Alu 1 142 -169 180 0 0 0 chr13 6176316 6176336 -95696833 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr13 6176494 6176515 -95696654 + AT_rich Low_complexity Low_complexity 1 21 0 2292 125 0 0 chr13 6176737 6177049 -95696120 + AluSx SINE Alu 1 312 0 32 26 0 0 chr13 6177273 6177312 -95695857 + AT_rich Low_complexity Low_complexity 1 39 0 527 164 52 124 chr13 6178561 6178838 -95694331 - MER66A LTR ERV1 -174 354 163 44 84 0 0 chr13 6179047 6179154 -95694015 + AT_rich Low_complexity Low_complexity 1 107 0 1204 180 0 42 chr13 6179495 6179734 -95693435 + AluJo SINE Alu 84 312 0 463 70 14 0 chr13 6180555 6180626 -95692543 + AluSc SINE Alu 236 307 -2 250 240 0 0 chr13 6181657 6181707 -95691462 + MIR SINE MIR 13 62 -200 * 524 244 7 30 chr13 6181702 6181837 -95691332 + L2 LINE L2 3181 3312 -1 213 323 0 0 chr13 6181862 6181927 -95691242 + MIR SINE MIR 195 259 -3 231 350 65 24 chr13 6182305 6182428 -95690741 - L2 LINE L2 -185 3087 2960 230 347 45 40 chr13 6182617 6182793 -95690376 - L2 LINE L2 -456 2858 2682 185 0 40 0 chr13 6182794 6182819 -95690350 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 970 133 27 0 chr13 6183087 6183237 -95689932 - MER5A DNA MER1_type -35 154 1 2226 95 113 9 chr13 6185466 6185793 -95687376 + MER46B DNA MER2_type 1 236 0 2023 130 0 14 chr13 6186586 6186879 -95686290 + AluSx SINE Alu 11 299 -13 2235 111 0 3 chr13 6187799 6188097 -95685072 - AluSx SINE Alu -15 297 1 1659 268 180 23 chr13 6188585 6189825 -95683344 + L2 LINE L2 1891 3312 -1 211 281 67 11 chr13 6189948 6190037 -95683132 + MIR SINE MIR 118 211 -51 38 0 0 0 chr13 6190048 6190086 -95683083 + AT_rich Low_complexity Low_complexity 1 38 0 223 322 42 42 chr13 6190309 6190452 -95682717 - L2 LINE L2 -228 3044 2902 33 90 0 0 chr13 6192434 6192523 -95680646 + AT_rich Low_complexity Low_complexity 1 89 0 2335 105 0 0 chr13 6192650 6192955 -95680214 + AluSx SINE Alu 2 306 -6 822 167 43 0 chr13 6193020 6193158 -95680011 + FRAM SINE Alu 4 147 -29 619 83 12 12 chr13 6194307 6194391 -95678778 + AluS SINE Alu 2 85 -228 213 185 46 46 chr13 6195351 6195416 -95677753 + MIR SINE MIR 143 207 -55 321 212 156 56 chr13 6196176 6196302 -95676867 + MIR3 SINE MIR 69 207 -1 315 0 0 0 chr13 6196882 6196917 -95676252 + (CA)n Simple_repeat Simple_repeat 2 36 0 533 209 143 33 chr13 6197482 6197692 -95675477 - L1ME4a LINE L1 -82 6039 5807 304 316 53 0 chr13 6198009 6198123 -95675046 - MIR SINE MIR -34 228 109 304 224 0 126 chr13 6198230 6198404 -95674765 - L1 LINE L1 -773 5373 5222 23 33 0 0 chr13 6198545 6198575 -95674594 + AT_rich Low_complexity Low_complexity 1 30 0 293 285 71 52 chr13 6198588 6198956 -95674213 - L1 LINE L1 -1197 4949 4575 324 226 96 26 chr13 6199205 6199320 -95673849 + MER103 DNA DNA 43 165 -1 23 33 0 0 chr13 6199652 6199682 -95673487 + AT_rich Low_complexity Low_complexity 1 30 0 851 282 152 0 chr13 6200600 6200923 -95672246 - L2 LINE L2 -19 3294 2923 186 43 0 0 chr13 6201211 6201234 -95671935 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 1121 167 0 36 chr13 6201235 6201427 -95671742 - AluJb SINE Alu -5 307 123 247 326 70 0 chr13 6201450 6201536 -95671633 + MIR SINE MIR 21 112 -150 264 223 107 27 chr13 6203115 6203227 -95669942 - MIR SINE MIR -55 207 87 1292 104 6 0 chr13 6203776 6203959 -95669210 - AluY SINE Alu -3 308 125 1719 181 52 6 chr13 6205131 6205457 -95667712 + MER2 DNA MER2_type 2 342 -2 693 174 91 0 chr13 6206611 6206732 -95666437 + AluJ SINE Alu 2 133 -169 209 159 23 0 chr13 6206759 6206803 -95666366 + GA-rich Low_complexity Low_complexity 1 45 0 2087 88 63 0 chr13 6206817 6207102 -95666067 + AluSq SINE Alu 1 303 -10 982 169 7 0 chr13 6207102 6207256 -95665913 + AluJ SINE Alu 134 288 -24 200 337 48 12 chr13 6207299 6207382 -95665787 - L2 LINE L2 -5 3308 3223 21 0 0 0 chr13 6207791 6207812 -95665357 + AT_rich Low_complexity Low_complexity 1 21 0 2900 164 71 9 chr13 6207812 6208360 -95664809 - L1MB3 LINE L1 -1 6182 5601 235 239 11 68 chr13 6209026 6209114 -95664055 + (CCCA)n Simple_repeat Simple_repeat 2 84 0 181 244 78 44 chr13 6209116 6209206 -95663963 - L2 LINE L2 -16 3256 3164 345 62 0 0 chr13 6209978 6210026 -95663143 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr13 6210054 6210083 -95663086 + AT_rich Low_complexity Low_complexity 1 29 0 423 231 52 23 chr13 6210302 6210513 -95662656 + Charlie7 DNA MER1_type 2317 2612 0 218 269 0 30 chr13 6210557 6210624 -95662545 + G-rich Low_complexity Low_complexity 4 68 0 783 244 168 43 chr13 6211765 6211995 -95661174 - MER58B DNA MER1_type -2079 341 63 1854 169 10 7 chr13 6211995 6212303 -95660866 + AluJo SINE Alu 1 309 -3 783 244 168 43 chr13 6212303 6212375 -95660794 - MER58B DNA MER1_type -2357 63 1 337 346 82 0 chr13 6212522 6212704 -95660465 - MIR SINE MIR -52 210 14 1865 178 0 0 chr13 6213094 6213392 -95659777 - AluJb SINE Alu -14 298 1 795 180 0 0 chr13 6213428 6213556 -95659613 - FLAM_C SINE Alu -3 130 3 441 115 58 16 chr13 6214922 6215011 -95658158 - L1PA8 LINE L1 0 6154 6067 876 122 0 15 chr13 6215156 6215287 -95657882 + FLAM_C SINE Alu 12 140 -3 204 97 0 0 chr13 6216175 6216206 -95656963 + (TA)n Simple_repeat Simple_repeat 1 31 0 285 316 85 17 chr13 6216251 6216428 -95656741 + MIR SINE MIR 74 262 0 382 344 78 9 chr13 6216658 6216876 -95656293 - MIR SINE MIR -10 252 20 24 0 0 0 chr13 6218598 6218622 -95654547 + GC_rich Low_complexity Low_complexity 1 24 0 1474 203 51 34 chr13 6219187 6219542 -95653627 + MLT1C-int LTR MaLR 1010 1370 -1 743 239 188 35 chr13 6219543 6219941 -95653228 + MLT1C LTR MaLR 6 464 -3 23 54 0 0 chr13 6220349 6220386 -95652783 + AT_rich Low_complexity Low_complexity 1 37 0 712 225 66 44 chr13 6220840 6221067 -95652102 + MLT1J LTR MaLR 13 244 -267 440 169 45 11 chr13 6221204 6221293 -95651876 + MLT1J LTR MaLR 420 511 0 22 0 0 0 chr13 6224902 6224924 -95648245 + AT_rich Low_complexity Low_complexity 1 22 0 816 210 19 12 chr13 6224926 6225088 -95648081 - FAM SINE Alu -12 163 1 2900 181 27 9 chr13 6225434 6225986 -95647183 - MER68 LTR ERV1 0 562 1 1919 170 80 18 chr13 6226480 6226879 -95646290 - MSTB LTR MaLR -2 424 1 25 0 0 0 chr13 6226974 6226999 -95646170 + AT_rich Low_complexity Low_complexity 1 25 0 288 273 182 0 chr13 6227344 6227476 -95645693 - L2 LINE L2 -447 2867 2712 2226 94 0 19 chr13 6227927 6228235 -95644934 + AluSc SINE Alu 1 302 -7 23 0 0 0 chr13 6228839 6228862 -95644307 + AT_rich Low_complexity Low_complexity 1 23 0 923 216 0 0 chr13 6228935 6229111 -95644058 + AluJb SINE Alu 137 312 0 699 184 19 25 chr13 6229150 6229308 -95643861 - L1MB8 LINE L1 -1 6177 6021 1557 169 64 0 chr13 6229309 6229604 -95643565 - L1MB8 LINE L1 -212 5966 5653 21 0 0 0 chr13 6230634 6230655 -95642514 + AT_rich Low_complexity Low_complexity 1 21 0 330 246 36 169 chr13 6230684 6230932 -95642237 - MIR SINE MIR -11 251 37 337 211 10 10 chr13 6231173 6231277 -95641892 + GA-rich Low_complexity Low_complexity 2 105 0 233 278 0 0 chr13 6231317 6231389 -95641780 + GA-rich Low_complexity Low_complexity 3 74 0 889 217 21 5 chr13 6232414 6232603 -95640566 - MER58A DNA MER1_type -3 221 30 2003 147 46 11 chr13 6233190 6233537 -95639632 - MER46B DNA MER2_type 0 236 3 1459 204 71 12 chr13 6233544 6233882 -95639287 - MER47A DNA MER2_type 0 366 9 2456 67 0 0 chr13 6234094 6234394 -95638775 - AluY SINE Alu -11 300 1 368 147 37 110 chr13 6234401 6234510 -95638659 - L1M4 LINE L1 -399 5779 5679 13795 190 36 14 chr13 6235245 6235656 -95637513 + L1PA16 LINE L1 1349 1749 -5120 2285 111 0 10 chr13 6235656 6235962 -95637207 + AluSp SINE Alu 1 303 -10 13795 190 36 14 chr13 6235962 6240948 -95632221 + L1PA16 LINE L1 1749 6860 -9 1023 234 62 34 chr13 6240925 6241313 -95631856 - L1M4 LINE L1 -1561 4585 4187 * 465 223 0 0 chr13 6241852 6241955 -95631214 - L1MA9 LINE L1 -37 6275 6173 204 388 110 0 chr13 6242513 6242776 -95630393 - L2 LINE L2 -542 2772 2481 456 202 126 0 chr13 6242951 6243070 -95630099 - Charlie5 DNA MER1_type -55 2557 2424 405 0 0 0 chr13 6246719 6246764 -95626405 + (TG)n Simple_repeat Simple_repeat 2 46 0 284 118 39 20 chr13 6246764 6246815 -95626354 - MER66B LTR ERV1 -140 346 295 2102 165 69 17 chr13 6247374 6247674 -95625495 - L1MB3 LINE L1 -32 6151 5823 2091 138 0 10 chr13 6247674 6247985 -95625184 - AluSx SINE Alu -4 308 1 2102 165 69 17 chr13 6247985 6248090 -95625079 - L1MB3 LINE L1 -360 5823 5725 743 316 128 9 chr13 6248117 6248572 -95624597 - L1MC/D LINE L1 -2004 5804 5296 2242 102 0 7 chr13 6248880 6249174 -95623995 + AluSc SINE Alu 1 292 -17 2135 180 8 0 chr13 6249440 6249802 -95623367 + MLT1A1 LTR MaLR 1 365 0 236 351 105 39 chr13 6250027 6250539 -95622630 + L2 LINE L2 2728 3270 -2 192 300 40 10 chr13 6251658 6251758 -95621411 - MIR SINE MIR -48 214 112 194 214 200 0 chr13 6251864 6251934 -95621235 + MIR SINE MIR 41 124 -84 551 237 39 77 chr13 6251984 6252191 -95620978 - MLT1J1 LTR MaLR 0 446 248 409 237 69 58 chr13 6252225 6252398 -95620771 - MER69A DNA AcHobo 0 177 3 243 234 47 0 chr13 6252500 6252564 -95620605 + MIR SINE MIR 196 262 0 204 40 0 0 chr13 6253609 6253634 -95619535 + (T)n Simple_repeat Simple_repeat 1 25 0 1023 200 44 5 chr13 6254571 6254776 -95618393 + MER20 DNA MER1_type 7 219 0 666 188 171 0 chr13 6255733 6255903 -95617266 - MLT1D LTR MaLR -3 502 304 1779 181 22 44 chr13 6255997 6256405 -95616764 - MER57A LTR ERV1 -4 399 1 621 199 41 23 chr13 6256405 6256576 -95616593 - MLT1D LTR MaLR -198 307 134 848 226 134 24 chr13 6256843 6257171 -95615998 - L1ME1 LINE L1 -5 6230 5867 2392 161 33 0 chr13 6257171 6257569 -95615600 - MSTB LTR MaLR 0 426 16 2824 211 49 40 chr13 6257587 6258563 -95614606 - L1ME1 LINE L1 -399 5836 4848 2174 127 0 3 chr13 6258563 6258862 -95614307 - AluSx SINE Alu -14 298 1 2824 211 49 40 chr13 6258862 6259148 -95614021 - L1ME1 LINE L1 -1387 4848 4566 864 280 52 0 chr13 6259184 6259470 -95613699 - L1ME1 LINE L1 -6067 329 29 347 216 30 26 chr13 6259640 6259755 -95613414 + L1ME LINE L1 5369 5456 -708 210 299 84 32 chr13 6259857 6260011 -95613158 - L2 LINE L2 -193 3079 2918 180 332 132 0 chr13 6261526 6261791 -95611378 - L2 LINE L2 -2499 815 516 304 319 49 16 chr13 6267108 6267207 -95605962 + MIR SINE MIR 14 108 -154 1749 161 3 42 chr13 6267207 6267518 -95605651 - AluSx SINE Alu -13 299 1 304 319 49 16 chr13 6267518 6267603 -95605566 + MIR SINE MIR 108 204 -58 180 0 0 0 chr13 6268318 6268338 -95604831 + (GA)n Simple_repeat Simple_repeat 1 20 0 467 63 16 0 chr13 6269012 6269075 -95604094 - MER4B LTR ERV1 0 610 547 3557 100 8 60 chr13 6269076 6269718 -95603451 - MER4B LTR ERV1 0 779 1 1037 125 0 36 chr13 6269718 6269884 -95603285 - MER4B LTR ERV1 -89 521 362 1051 172 78 5 chr13 6270025 6270229 -95602940 + L1PA6 LINE L1 5911 6129 -25 23 0 0 0 chr13 6270291 6270314 -95602855 + AT_rich Low_complexity Low_complexity 1 23 0 1868 168 0 3 chr13 6270472 6270776 -95602393 - AluJb SINE Alu -9 303 1 1660 169 20 10 chr13 6271943 6272239 -95600930 - AluJb SINE Alu -12 300 2 919 186 25 0 chr13 6272255 6272416 -95600753 + FAM SINE Alu 2 166 -9 2211 109 17 0 chr13 6272983 6273276 -95599893 + AluSx SINE Alu 1 298 -14 34 84 0 0 chr13 6274269 6274352 -95598817 + AT_rich Low_complexity Low_complexity 1 83 0 230 246 35 0 chr13 6274422 6274479 -95598690 + L2 LINE L2 3211 3269 -3 2448 42 0 51 chr13 6275929 6276241 -95596928 - AluY SINE Alu -15 296 1 237 322 23 0 chr13 6277053 6277140 -95596029 + MIR3 SINE MIR 74 162 -46 319 198 32 19 chr13 6277203 6277360 -95595809 + (TA)n Simple_repeat Simple_repeat 2 160 0 2477 51 10 0 chr13 6277466 6277758 -95595411 - AluY SINE Alu -16 295 1 2283 98 3 0 chr13 6280243 6280539 -95592630 - AluSq SINE Alu -16 297 1 863 208 38 32 chr13 6280577 6280765 -95592404 - L1MC4 LINE L1 -380 7662 7477 524 113 62 0 chr13 6280765 6280845 -95592324 - L1PA16 LINE L1 -10 6156 6072 863 208 38 32 chr13 6280845 6281073 -95592096 - L1MC4 LINE L1 -565 7477 7016 3461 175 50 5 chr13 6281119 6281777 -95591392 - Tigger2 DNA MER2_type -2029 689 2 273 206 68 14 chr13 6281777 6281831 -95591338 - L1MC4 LINE L1 -1506 6536 6476 3331 203 67 85 chr13 6281831 6282711 -95590458 - MER6 DNA MER2_type -1 864 1 273 206 68 14 chr13 6282711 6282729 -95590440 - L1MC4 LINE L1 -1566 6476 6460 617 225 43 0 chr13 6283394 6283532 -95589637 + FRAM SINE Alu 28 171 -5 1447 157 19 83 chr13 6283533 6283845 -95589324 + AluSq SINE Alu 1 292 -21 6119 191 36 27 chr13 6283845 6285280 -95587889 + L1 LINE L1 3889 5336 -810 2608 94 25 0 chr13 6285833 6286195 -95586974 - L1PA6 LINE L1 0 6154 5784 1558 213 82 49 chr13 6286350 6286839 -95586330 + MLT1D LTR MaLR 1 505 0 477 50 0 0 chr13 6287225 6287285 -95585884 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 24 53 0 0 chr13 6287576 6287614 -95585555 + AT_rich Low_complexity Low_complexity 1 38 0 675 159 0 40 chr13 6287670 6287796 -95585373 + FLAM_A SINE Alu 1 121 -12 249 57 0 0 chr13 6287827 6287862 -95585307 + (TA)n Simple_repeat Simple_repeat 2 36 0 979 275 95 32 chr13 6288160 6288691 -95584478 - L1ME3A LINE L1 -312 5919 5326 1940 119 19 0 chr13 6288691 6288959 -95584210 - AluSg SINE Alu 0 310 38 979 275 95 32 chr13 6288959 6289210 -95583959 - L1ME3A LINE L1 -905 5326 5092 2329 72 0 75 chr13 6289462 6289795 -95583374 - AluY SINE Alu -3 308 1 370 231 69 43 chr13 6289974 6290013 -95583156 - L1ME3A LINE L1 -2845 3370 3333 2455 83 0 16 chr13 6290013 6290326 -95582843 - AluSg SINE Alu -2 308 1 370 231 69 43 chr13 6290326 6290563 -95582606 - L1ME3A LINE L1 -2882 3333 3087 451 281 56 6 chr13 6290574 6290734 -95582435 + MIR SINE MIR 74 241 -21 22 94 0 0 chr13 6290890 6290954 -95582215 + AT_rich Low_complexity Low_complexity 1 64 0 297 263 144 54 chr13 6291093 6291552 -95581617 - L1MDa LINE L1 -871 1705 1311 654 305 47 72 chr13 6291640 6291992 -95581177 - L1MDa LINE L1 -5104 1101 767 682 194 8 8 chr13 6291992 6292116 -95581053 - FLAM_A SINE Alu -9 124 1 654 305 47 72 chr13 6292116 6292333 -95580836 - L1MDa LINE L1 -5438 767 546 371 127 28 0 chr13 6292335 6292406 -95580763 - MER53 DNA DNA 0 189 117 1394 195 44 13 chr13 6292445 6292505 -95580664 - L1MC1 LINE L1 0 6344 6287 2674 66 3 21 chr13 6292505 6292882 -95580287 - L1PA13 LINE L1 -2 6161 5792 1394 195 44 13 chr13 6292882 6292941 -95580228 - L1MC1 LINE L1 -57 6287 6231 429 109 0 0 chr13 6292941 6293005 -95580164 + (CA)n Simple_repeat Simple_repeat 2 65 0 1394 195 44 13 chr13 6293005 6293226 -95579943 - L1MC1 LINE L1 -113 6231 6009 455 245 25 80 chr13 6293560 6293723 -95579446 - L1MDa LINE L1 -5960 245 92 336 280 76 0 chr13 6293728 6293846 -95579323 - MIR SINE MIR -55 207 81 2302 150 92 9 chr13 6295024 6295472 -95577697 + MER31A LTR ERV1 1 485 0 21 0 0 0 chr13 6296112 6296133 -95577036 + AT_rich Low_complexity Low_complexity 1 21 0 266 250 53 0 chr13 6297587 6297663 -95575506 - MLT1G LTR MaLR -13 577 498 484 270 101 30 chr13 6297778 6298045 -95575124 - MLT1G LTR MaLR -290 300 15 1842 159 14 3 chr13 6298217 6298513 -95574656 - AluSx SINE Alu -13 299 1 1546 223 58 62 chr13 6298730 6298792 -95574377 - Charlie1 DNA MER1_type 0 2761 2700 1918 161 3 3 chr13 6298792 6299102 -95574067 + AluSx SINE Alu 1 310 -2 1546 223 58 62 chr13 6299102 6299569 -95573600 - Charlie1 DNA MER1_type -61 2700 2234 261 254 0 60 chr13 6300032 6300166 -95573003 + (CCCCAA)n Simple_repeat Simple_repeat 1 126 0 834 120 8 0 chr13 6306180 6306297 -95566872 - LTR12 LTR ERV1 -238 476 359 323 290 0 0 chr13 6306297 6306397 -95566772 - LTR30 LTR ERV1 -98 624 525 1712 117 0 146 chr13 6306397 6306792 -95566377 - pTR5 LTR ERV1 -429 2009 1352 879 199 11 69 chr13 6306879 6307141 -95566028 - pTR5 LTR ERV1 -1410 1028 782 258 273 102 0 chr13 6307747 6307835 -95565334 - MIR SINE MIR -73 189 93 2106 127 3 3 chr13 6308557 6308856 -95564313 - AluSc SINE Alu -10 299 1 3310 170 71 43 chr13 6311419 6312755 -95560414 + LTR19-int LTR ERV1 478 2131 -3086 2010 130 48 0 chr13 6312760 6313053 -95560116 - AluSx SINE Alu -5 307 1 520 121 0 36 chr13 6313576 6313659 -95559510 - FRAM SINE Alu -27 149 70 556 189 0 0 chr13 6314433 6314528 -95558641 + AluJb SINE Alu 206 300 -12 543 245 100 52 chr13 6314528 6314767 -95558402 - L1M4 LINE L1 -2043 4103 3846 2044 142 3 7 chr13 6314767 6315077 -95558092 - AluSx SINE Alu -3 309 1 543 245 100 52 chr13 6315077 6315127 -95558042 - L1M4 LINE L1 -2300 3846 3800 915 234 69 31 chr13 6315834 6316224 -95556945 + MLT1A1 LTR MaLR 10 363 -2 1457 163 16 16 chr13 6316368 6316620 -95556549 + AluJo SINE Alu 37 288 -24 189 0 0 0 chr13 6316637 6316658 -95556511 + (TG)n Simple_repeat Simple_repeat 2 22 0 285 62 0 42 chr13 6316709 6316757 -95556412 - Alu SINE Alu 0 302 257 5057 157 32 60 chr13 6317304 6318403 -95554766 - MER11C LTR ERVK -1 1070 3 551 269 145 44 chr13 6319776 6320013 -95553156 + MIR SINE MIR 4 261 -1 1540 193 0 7 chr13 6320017 6320313 -95552856 - AluJo SINE Alu -18 294 1 434 257 13 40 chr13 6320412 6320564 -95552605 + MER104 DNA Tc2 33 180 0 197 277 0 0 chr13 6321026 6321073 -95552096 + L2 LINE L2 3225 3271 -1 1912 134 0 0 chr13 6322238 6322522 -95550647 + AluSx SINE Alu 1 284 -28 231 326 62 39 chr13 6324099 6324228 -95548941 + MIR SINE MIR 81 212 -50 391 305 49 43 chr13 6325343 6325507 -95547662 + L2 LINE L2 3104 3268 -4 1994 116 10 0 chr13 6325991 6326293 -95546876 + AluSx SINE Alu 1 305 -7 610 67 56 0 chr13 6326675 6326764 -95546405 - AluY SINE Alu -7 304 211 201 39 0 0 chr13 6327574 6327600 -95545569 + (CA)n Simple_repeat Simple_repeat 2 27 0 395 111 0 0 chr13 6327630 6327684 -95545485 - MSTD LTR MaLR -342 54 1 361 223 138 0 chr13 6327757 6327887 -95545282 + L1ME LINE L1 1173 1319 -5087 1202 167 99 35 chr13 6327889 6328171 -95544998 + AluJo SINE Alu 6 305 -7 254 167 133 0 chr13 6328188 6328248 -95544921 + FAM SINE Alu 105 172 -3 707 222 46 42 chr13 6328248 6328509 -95544660 + L1ME LINE L1 2411 2672 -3734 * 5501 231 68 56 chr13 6328506 6328666 -95544503 + L1ME LINE L1 3359 3516 -2890 1914 140 3 10 chr13 6328666 6328980 -95544189 + AluSx SINE Alu 1 312 0 5501 231 68 56 chr13 6328980 6329205 -95543964 + L1ME LINE L1 3516 3737 -2669 1445 188 11 31 chr13 6329205 6329492 -95543677 - AluJo SINE Alu -29 283 3 5501 231 68 56 chr13 6329492 6330387 -95542782 + L1ME LINE L1 3737 4620 -1786 1717 118 0 4 chr13 6330387 6330641 -95542528 + L1PB1 LINE L1 5896 6148 -3 5501 231 68 56 chr13 6330641 6330891 -95542278 + L1ME LINE L1 4620 4866 -1540 2126 109 7 3 chr13 6330891 6331193 -95541976 + AluSq SINE Alu 1 303 -10 5501 231 68 56 chr13 6331193 6331816 -95541353 + L1ME LINE L1 4866 5545 -861 2240 71 7 0 chr13 6331816 6332110 -95541059 + AluY SINE Alu 1 296 -15 5501 231 68 56 chr13 6332110 6332206 -95540963 + L1ME LINE L1 5545 5638 -768 562 123 26 70 chr13 6332207 6332321 -95540848 - FLAM_C SINE Alu -6 137 29 268 262 37 47 chr13 6332322 6332429 -95540740 + L1ME LINE L1 5770 5875 -547 1965 125 17 0 chr13 6332429 6332724 -95540445 - AluSx SINE Alu -12 300 1 1748 165 0 16 chr13 6332772 6333081 -95540088 + AluJb SINE Alu 1 304 -8 888 300 93 39 chr13 6333143 6333636 -95539533 + LTR33 LTR ERVL 2 521 0 7374 49 6 10 chr13 6333772 6334950 -95538219 + SVA Other Other 326 1382 -4 391 320 66 22 chr13 6334954 6335135 -95538034 + L1MC/D LINE L1 4519 4707 -1439 1566 177 78 27 chr13 6335260 6335594 -95537575 - MSTD LTR MaLR -45 351 1 971 178 194 62 chr13 6335617 6335689 -95537480 + MER2 DNA MER2_type 1 62 -282 252 0 0 0 chr13 6335689 6335717 -95537452 + (TA)n Simple_repeat Simple_repeat 2 29 0 1985 77 7 39 chr13 6335719 6336005 -95537164 - AluY SINE Alu -34 277 1 971 178 194 62 chr13 6336005 6336233 -95536936 + MER2 DNA MER2_type 62 344 0 1567 185 0 17 chr13 6336270 6336567 -95536602 + AluJb SINE Alu 1 292 -20 921 307 45 12 chr13 6336633 6337034 -95536135 + L1MC/D LINE L1 5278 5691 -2117 1000 71 21 0 chr13 6337247 6337388 -95535781 - HSMAR1 DNA Mariner 0 1287 1144 2058 106 13 3 chr13 6337391 6337692 -95535477 - AluSp SINE Alu -1 312 9 188 319 116 48 chr13 6340567 6340774 -95532395 - MIR SINE MIR -40 222 2 672 210 76 93 chr13 6340837 6341127 -95532042 - MLT1B LTR MaLR 0 390 106 1497 108 42 12 chr13 6341201 6341441 -95531728 - Tigger2 DNA MER2_type -54 2664 2418 2290 87 0 6 chr13 6341695 6342007 -95531162 - AluY SINE Alu -1 310 1 226 259 141 0 chr13 6343993 6344078 -95529091 - MIR SINE MIR 0 262 166 188 200 20 0 chr13 6344315 6344365 -95528804 + (TA)n Simple_repeat Simple_repeat 2 52 0 2614 14 0 0 chr13 6345883 6346203 -95526966 - AluYa5 SINE Alu 0 320 1 22 0 0 0 chr13 6346498 6346520 -95526649 + AT_rich Low_complexity Low_complexity 1 22 0 1865 138 0 0 chr13 6347577 6347866 -95525303 + AluSg1 SINE Alu 1 289 -20 197 132 26 0 chr13 6348766 6348804 -95524365 + GA-rich Low_complexity Low_complexity 1 39 0 1320 162 46 12 chr13 6349326 6349567 -95523602 + MLT1A1 LTR MaLR 116 364 -1 775 245 125 14 chr13 6349806 6350014 -95523155 - MIR SINE MIR -14 248 18 423 281 136 25 chr13 6350184 6350383 -95522786 - MIR SINE MIR -14 248 28 352 263 73 47 chr13 6350424 6350615 -95522554 + MIR SINE MIR 16 207 -55 1818 189 20 85 chr13 6350654 6351150 -95522019 + MLT2C2 LTR ERVL 1 464 0 378 296 118 10 chr13 6352217 6352420 -95520749 + MER112 DNA MER1_type 3 227 -33 2946 147 68 9 chr13 6353480 6354024 -95519145 + L1MB3 LINE L1 5599 6174 -9 206 240 20 0 chr13 6357180 6357230 -95515939 + L2 LINE L2 3210 3260 -12 223 325 34 17 chr13 6357399 6357516 -95515653 + MIR SINE MIR 42 160 -102 312 247 169 0 chr13 6357687 6357776 -95515393 - MIR SINE MIR -82 180 77 246 244 252 9 chr13 6358392 6358507 -95514662 + LTR16C LTR ERVL 71 213 -278 529 200 25 0 chr13 6358529 6358649 -95514520 + LTR16C LTR ERVL 363 485 -6 375 163 11 22 chr13 6358887 6358979 -95514190 + GA-rich Low_complexity Low_complexity 3 93 0 1500 225 38 40 chr13 6359074 6359496 -95513673 + L1MC4a LINE L1 7346 7766 -42 685 140 0 0 chr13 6360326 6360426 -95512743 - FLAM_C SINE Alu -33 110 11 1990 126 7 0 chr13 6360439 6360741 -95512428 - AluSx SINE Alu -8 304 1 2294 66 0 7 chr13 6361548 6361849 -95511320 - AluY SINE Alu -12 299 1 1326 219 111 28 chr13 6362246 6362670 -95510499 + MLT1C LTR MaLR 1 459 -8 322 322 71 95 chr13 6362715 6362743 -95510426 + L1MC/D LINE L1 5322 5349 -2459 1685 171 0 25 chr13 6362743 6363058 -95510111 + AluJo SINE Alu 1 307 -5 322 322 71 95 chr13 6363058 6363312 -95509857 + L1MC/D LINE L1 5349 5597 -2211 2003 106 7 23 chr13 6363313 6363616 -95509553 - AluSx SINE Alu -14 298 1 1576 148 7 35 chr13 6363860 6364150 -95509019 - AluSx SINE Alu -22 290 9 516 248 36 22 chr13 6364207 6364344 -95508825 + MER74B LTR ERVL 67 205 -417 264 229 0 0 chr13 6364394 6364442 -95508727 - MIR SINE MIR -82 126 79 2634 26 0 3 chr13 6364505 6364817 -95508352 + AluYa5 SINE Alu 1 311 0 244 156 16 94 chr13 6364868 6364932 -95508237 - L2 LINE L2 0 3272 3214 263 175 18 0 chr13 6365073 6365130 -95508039 + CT-rich Low_complexity Low_complexity 1 58 0 2074 103 10 17 chr13 6365132 6365434 -95507735 - AluSp SINE Alu -2 311 12 2410 60 0 3 chr13 6365916 6366217 -95506952 - AluY SINE Alu -9 302 3 1811 188 135 12 chr13 6366427 6366843 -95506326 - MLT1C LTR MaLR 0 467 1 1934 148 0 7 chr13 6368634 6368944 -95504225 - AluSx SINE Alu -4 308 1 198 266 21 128 chr13 6369147 6369241 -95503928 - MIR SINE MIR -102 106 23 561 274 64 95 chr13 6369311 6369669 -95503500 - MLT1J LTR MaLR -54 457 111 279 178 41 27 chr13 6369608 6369681 -95503488 - LTR67 LTR ERVL -380 177 104 * 432 316 73 10 chr13 6370404 6370610 -95502559 - MARNA DNA Mariner -46 540 322 22 0 0 0 chr13 6372884 6372906 -95500263 + AT_rich Low_complexity Low_complexity 1 22 0 627 256 94 30 chr13 6374079 6374484 -95498685 + LTR33 LTR ERVL 1 467 -54 192 315 117 12 chr13 6374546 6374708 -95498461 - MIR SINE MIR -74 188 10 1573 154 39 29 chr13 6374776 6375055 -95498114 + AluJo SINE Alu 1 282 -30 637 277 98 5 chr13 6380926 6381150 -95492019 - MIR SINE MIR 0 262 18 295 284 8 94 chr13 6382327 6382429 -95490740 + MIR SINE MIR 59 150 -112 2255 106 0 6 chr13 6382429 6382740 -95490429 + AluY SINE Alu 1 309 -2 295 284 8 94 chr13 6382740 6382764 -95490405 + MIR SINE MIR 150 174 -88 752 207 18 12 chr13 6382959 6383123 -95490046 + MER5A DNA MER1_type 15 179 -10 1730 182 21 49 chr13 6384533 6384918 -95488251 - MLT1A2 LTR MaLR 0 374 1 341 291 61 10 chr13 6384952 6385148 -95488021 + MIR SINE MIR 47 252 -10 1283 204 106 0 chr13 6385290 6385555 -95487614 + MLT1A1 LTR MaLR 73 365 0 1604 259 21 42 chr13 6385557 6385990 -95487179 + MLT1F LTR MaLR 61 485 -57 1992 133 56 19 chr13 6385990 6386312 -95486857 - MER1B DNA MER1_type 0 337 4 1604 259 21 42 chr13 6386312 6386356 -95486813 + MLT1F LTR MaLR 485 528 -14 2281 117 3 0 chr13 6386674 6386982 -95486187 + AluSp SINE Alu 1 309 -4 238 283 0 0 chr13 6387234 6387287 -95485882 + (CA)n Simple_repeat Simple_repeat 1 53 0 2297 113 0 0 chr13 6387737 6388046 -95485123 - AluSc SINE Alu 0 309 1 1537 104 0 5 chr13 6388114 6388315 -95484854 - AluSx SINE Alu -112 200 1 184 107 0 0 chr13 6389031 6389059 -95484110 - L2 LINE L2 -1 3271 3244 195 42 0 0 chr13 6389061 6389085 -95484084 + (TG)n Simple_repeat Simple_repeat 1 24 0 213 222 287 9 chr13 6389504 6389612 -95483557 - L2 LINE L2 -1254 2060 1923 232 310 99 30 chr13 6389655 6389887 -95483282 + L1M4 LINE L1 3596 3843 -2303 1889 157 7 0 chr13 6389930 6390210 -95482959 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr13 6390396 6390418 -95482751 + AT_rich Low_complexity Low_complexity 1 22 0 1415 200 48 10 chr13 6390427 6390717 -95482452 + AluJo SINE Alu 1 301 -11 294 287 53 0 chr13 6390946 6391040 -95482129 + L2 LINE L2 3172 3270 -2 786 229 60 28 chr13 6391655 6391904 -95481265 + L1ME LINE L1 5539 5795 -326 4012 68 9 4 chr13 6392148 6392674 -95480495 + L1PA6 LINE L1 5625 6153 -1 1250 180 56 88 chr13 6393332 6393709 -95479460 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr13 6394371 6394398 -95478771 + (T)n Simple_repeat Simple_repeat 1 27 0 1312 215 60 3 chr13 6395303 6395587 -95477582 + AluJb SINE Alu 1 300 -2 2247 141 28 5 chr13 6395587 6395962 -95477207 - MLT1B LTR MaLR -8 388 1 1858 137 0 53 chr13 6396196 6396495 -95476674 + AluJb SINE Alu 1 283 -29 216 0 0 0 chr13 6396498 6396522 -95476647 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 186 243 57 14 chr13 6396872 6396942 -95476227 - MIR SINE MIR -7 255 183 257 0 30 0 chr13 6398076 6398109 -95475060 + (TC)n Simple_repeat Simple_repeat 1 34 0 973 172 12 6 chr13 6398132 6398295 -95474874 - FRAM SINE Alu -2 164 1 4599 189 25 16 chr13 6398603 6398861 -95474308 + L1MB2 LINE L1 4899 5153 -1018 2198 126 3 0 chr13 6398861 6399163 -95474006 + AluSx SINE Alu 1 303 -9 4599 189 25 16 chr13 6399163 6400163 -95473006 + L1MB2 LINE L1 5153 6171 0 337 241 54 27 chr13 6400920 6401032 -95472137 + MIR SINE MIR 19 133 -75 237 167 0 0 chr13 6401144 6401198 -95471971 + GA-rich Low_complexity Low_complexity 1 54 0 272 240 52 65 chr13 6401488 6401642 -95471527 - L1ME3A LINE L1 0 6170 6019 350 305 41 25 chr13 6401787 6401984 -95471185 - L1MC5 LINE L1 -440 7521 7322 604 249 116 6 chr13 6402105 6402286 -95470883 + MER3 DNA MER1_type 9 209 0 678 238 43 25 chr13 6402286 6402521 -95470648 - L1MC5 LINE L1 -760 7201 6963 748 192 99 29 chr13 6402526 6402682 -95470487 - AluJo SINE Alu -9 303 133 2370 111 0 0 chr13 6402682 6402988 -95470181 - AluSc SINE Alu -3 306 1 748 192 99 29 chr13 6402988 6403003 -95470166 - AluJo SINE Alu -179 133 120 1533 165 6 115 chr13 6403020 6403359 -95469810 - AluJb SINE Alu 0 302 1 354 321 207 0 chr13 6404245 6404438 -95468731 + MIR SINE MIR 28 260 -2 555 314 77 43 chr13 6404485 6405037 -95468132 + L2 LINE L2 2481 3114 -199 2008 105 28 14 chr13 6405037 6405322 -95467847 - AluSx SINE Alu -23 289 1 555 314 77 43 chr13 6405322 6405520 -95467649 + L2 LINE L2 3114 3304 -9 3904 167 23 20 chr13 6406038 6406775 -95466394 - L1MB3 LINE L1 -2 6181 5443 942 207 0 6 chr13 6406858 6407022 -95466147 - FAM SINE Alu -22 163 1 21 57 0 0 chr13 6407037 6407072 -95466097 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 6407916 6407947 -95465222 + AT_rich Low_complexity Low_complexity 1 31 0 4154 129 7 10 chr13 6409589 6410186 -95462983 - HSMAR1 DNA Mariner -218 1069 475 2196 120 0 0 chr13 6410198 6410489 -95462680 + AluSx SINE Alu 1 291 -21 3310 55 59 7 chr13 6410489 6410927 -95462242 + L1PA7 LINE L1 5686 6146 -8 2258 120 0 7 chr13 6410936 6411244 -95461925 + AluSg SINE Alu 1 306 -4 324 259 62 49 chr13 6411699 6411861 -95461308 + MER65-int LTR ERV1 98 261 -4610 309 229 91 48 chr13 6412607 6412817 -95460352 + L1MC5 LINE L1 7642 7860 -101 843 219 11 38 chr13 6413046 6413229 -95459940 - MER20 DNA MER1_type -4 215 38 5260 163 12 4 chr13 6413626 6414551 -95458618 - L1P LINE L1 -1232 4914 3983 2669 182 2 17 chr13 6414553 6415070 -95458099 + L1MB3 LINE L1 5675 6183 0 193 322 91 58 chr13 6415195 6415316 -95457853 + MIR SINE MIR 118 242 -20 257 342 53 0 chr13 6415515 6415629 -95457540 + L2 LINE L2 3185 3304 -9 1538 79 19 0 chr13 6416304 6416519 -95456650 + L1PA11 LINE L1 5956 6174 0 219 139 0 0 chr13 6416940 6416976 -95456193 + (A)n Simple_repeat Simple_repeat 1 36 0 236 94 0 0 chr13 6417368 6417444 -95455725 - Alu SINE Alu 0 324 249 2238 157 107 25 chr13 6417444 6417744 -95455425 + L1MC2 LINE L1 5820 6177 -167 2217 122 0 0 chr13 6417744 6418031 -95455138 + AluSc SINE Alu 1 287 -22 2238 157 107 25 chr13 6418031 6418215 -95454954 + L1MC2 LINE L1 6177 6344 0 324 0 0 0 chr13 6418415 6418451 -95454718 + (TG)n Simple_repeat Simple_repeat 1 36 0 249 286 71 52 chr13 6419211 6419421 -95453748 + MIR SINE MIR 46 259 -3 255 289 72 0 chr13 6419475 6419558 -95453611 - MIR SINE MIR -167 95 7 366 323 161 53 chr13 6419675 6420295 -95452874 + L3 LINE CR1 888 1574 -3 1131 140 0 0 chr13 6420297 6420454 -95452715 + AluJb SINE Alu 4 160 -152 402 142 0 0 chr13 6420457 6420533 -95452636 + Alu SINE Alu 241 299 -3 2212 90 4 0 chr13 6421190 6421468 -95451701 + AluSg SINE Alu 1 301 0 199 0 0 0 chr13 6421468 6421490 -95451679 + (CAAA)n Simple_repeat Simple_repeat 1 180 0 908 202 167 74 chr13 6421719 6422139 -95451030 + LTR37B LTR ERV1 10 468 0 1527 160 0 16 chr13 6422731 6422981 -95450188 - AluJb SINE Alu -16 296 51 30 45 0 0 chr13 6423507 6423551 -95449618 + AT_rich Low_complexity Low_complexity 1 44 0 3454 160 39 20 chr13 6423875 6424539 -95448630 + L1MB7 LINE L1 5495 6171 -13 1846 129 126 55 chr13 6427211 6427619 -95445550 + MER61C LTR ERV1 7 434 0 2603 58 0 3 chr13 6427674 6427982 -95445187 + AluY SINE Alu 1 307 -4 1238 134 5 5 chr13 6428009 6428203 -95444966 - Tigger1 DNA MER2_type 0 2418 2225 734 183 7 22 chr13 6428205 6428342 -95444827 + AluJo SINE Alu 2 136 -176 2594 142 27 0 chr13 6428358 6428767 -95444402 - Tigger1 DNA MER2_type -182 2236 1817 333 250 11 11 chr13 6428890 6428982 -95444187 - Tigger1 DNA MER2_type -857 1561 1470 335 157 33 13 chr13 6428982 6429135 -95444034 + (TATAA)n Simple_repeat Simple_repeat 4 159 0 353 175 44 17 chr13 6429140 6429425 -95443744 + (TTATA)n Simple_repeat Simple_repeat 1 292 0 31 0 0 0 chr13 6429425 6429456 -95443713 + AT_rich Low_complexity Low_complexity 1 31 0 336 80 68 51 chr13 6429456 6429632 -95443537 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 582 85 73 0 chr13 6429628 6429792 -95443377 + (TA)n Simple_repeat Simple_repeat 1 176 0 298 148 49 16 chr13 6429810 6429932 -95443237 + (TA)n Simple_repeat Simple_repeat 1 126 0 2201 84 0 11 chr13 6429940 6430224 -95442945 - AluY SINE Alu -30 281 1 8998 123 42 20 chr13 6430224 6431056 -95442113 - Tigger1 DNA MER2_type -939 1479 601 2076 115 34 3 chr13 6431056 6431352 -95441817 - AluSx SINE Alu -7 305 1 8998 123 42 20 chr13 6431352 6431956 -95441213 - Tigger1 DNA MER2_type -1817 601 12 21 0 0 0 chr13 6432453 6432474 -95440695 + AT_rich Low_complexity Low_complexity 1 21 0 426 351 137 17 chr13 6432858 6433217 -95439952 + L2 LINE L2 1872 2273 -1041 243 360 134 7 chr13 6434380 6434663 -95438506 + L2 LINE L2 2950 3268 -4 702 167 92 0 chr13 6434716 6434836 -95438333 + FLAM_C SINE Alu 2 132 -11 21 36 0 0 chr13 6434836 6434864 -95438305 + AT_rich Low_complexity Low_complexity 1 28 0 208 128 51 0 chr13 6435022 6435061 -95438108 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1840 152 3 20 chr13 6435974 6436270 -95436899 - AluSx SINE Alu -21 291 1 207 0 0 0 chr13 6436270 6436293 -95436876 + (T)n Simple_repeat Simple_repeat 1 23 0 1728 126 4 24 chr13 6436400 6436655 -95436514 - AluSq SINE Alu -9 304 55 24 32 0 0 chr13 6437032 6437063 -95436106 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 6438077 6438099 -95435070 + AT_rich Low_complexity Low_complexity 1 22 0 1427 123 88 4 chr13 6438174 6438434 -95434735 - L1MA5 LINE L1 -2 6298 6017 540 212 171 23 chr13 6438511 6438775 -95434394 - L1MC5 LINE L1 -50 7911 7609 314 345 12 25 chr13 6439105 6439355 -95433814 + HERVL LTR ERVL 1516 1800 -3964 345 287 71 96 chr13 6439576 6440070 -95433099 + HERVL LTR ERVL 3851 4395 -1090 376 293 132 19 chr13 6440555 6440963 -95432206 + L2 LINE L2 2581 3044 -269 443 219 24 41 chr13 6441840 6441963 -95431206 + LTR67 LTR ERVL 429 549 -8 1772 164 88 8 chr13 6442162 6442515 -95430654 + MLT1C LTR MaLR 2 382 -85 1933 145 35 0 chr13 6445492 6445781 -95427388 + AluSx SINE Alu 1 299 -13 237 230 142 35 chr13 6446005 6446118 -95427051 + MIR3 SINE MIR 3 127 -81 2121 116 7 13 chr13 6446879 6447182 -95425987 + AluSx SINE Alu 3 303 -9 460 208 10 10 chr13 6447214 6447315 -95425854 - MIR3 SINE MIR -39 169 69 2088 119 3 17 chr13 6447788 6448083 -95425086 - AluSg SINE Alu -19 291 1 338 136 40 160 chr13 6448146 6448271 -95424898 + MER34 LTR ERV1 433 542 0 1852 154 16 16 chr13 6448771 6449082 -95424087 + AluJb SINE Alu 1 311 -1 1556 182 37 14 chr13 6449788 6450085 -95423084 - AluJb SINE Alu -8 304 1 1530 228 47 17 chr13 6450344 6450747 -95422422 + MLT1C LTR MaLR 53 467 0 471 313 70 18 chr13 6450944 6451171 -95421998 - MIR SINE MIR 0 262 24 305 226 60 12 chr13 6451314 6451398 -95421771 - Charlie4 DNA MER1_type -33 1928 1841 1916 169 10 3 chr13 6452585 6452893 -95420276 - AluJo SINE Alu -2 310 1 696 148 9 0 chr13 6454389 6454497 -95418672 - AluJb SINE Alu -15 297 189 1014 147 0 0 chr13 6454497 6454640 -95418529 - AluSq/x SINE Alu -169 143 1 2018 157 0 0 chr13 6454943 6455249 -95417920 - AluJb SINE Alu -4 308 3 2185 108 0 62 chr13 6456207 6456532 -95416637 + AluSx SINE Alu 1 305 -7 344 208 35 6 chr13 6456649 6456822 -95416347 + (TA)n Simple_repeat Simple_repeat 2 179 0 648 203 0 17 chr13 6456890 6457008 -95416161 - FLAM_A SINE Alu -14 119 4 4583 153 38 27 chr13 6457012 6457308 -95415861 - L1MB3 LINE L1 -40 6143 5852 1900 130 3 25 chr13 6457308 6457617 -95415552 - AluSg SINE Alu 0 303 1 4583 153 38 27 chr13 6457617 6458079 -95415090 - L1MB3 LINE L1 -331 5852 5371 1952 79 0 20 chr13 6458079 6458331 -95414838 - AluSx SINE Alu -14 298 52 4583 153 38 27 chr13 6458331 6458416 -95414753 - L1MB3 LINE L1 -812 5371 5288 271 322 94 0 chr13 6458592 6458730 -95414439 + MIR SINE MIR 43 190 -67 1761 183 10 0 chr13 6458919 6459208 -95413961 - AluJo SINE Alu -15 297 6 271 284 15 0 chr13 6459416 6459483 -95413686 - MER5A DNA MER1_type -56 133 66 384 293 158 6 chr13 6459641 6459805 -95413364 - MIR SINE MIR -26 236 48 288 0 0 0 chr13 6460761 6460793 -95412376 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr13 6461436 6461459 -95411710 + AT_rich Low_complexity Low_complexity 1 23 0 755 203 152 21 chr13 6461581 6461832 -95411337 + L1MB7 LINE L1 4906 5201 -945 1883 151 0 35 chr13 6461832 6462143 -95411026 + AluJb SINE Alu 1 300 -12 755 203 152 21 chr13 6462143 6462181 -95410988 + L1MB7 LINE L1 5201 5233 -913 2049 197 100 24 chr13 6462187 6462655 -95410514 + MLT2B2 LTR ERVL 9 512 -3 3910 202 31 13 chr13 6462655 6463537 -95409632 + L1MB7 LINE L1 5236 6132 -52 341 285 59 31 chr13 6463574 6463746 -95409423 + L1ME3 LINE L1 5995 6152 -10 354 312 145 0 chr13 6463988 6464174 -95408995 - MIR SINE MIR -30 232 20 23 0 0 0 chr13 6465842 6465865 -95407304 + AT_rich Low_complexity Low_complexity 1 23 0 2441 78 0 7 chr13 6466264 6466570 -95406599 + AluY SINE Alu 1 304 -7 1073 160 48 21 chr13 6466582 6466770 -95406399 + AluSc SINE Alu 99 291 -18 1931 166 10 0 chr13 6466809 6467104 -95406065 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr13 6467372 6467407 -95405762 + AT_rich Low_complexity Low_complexity 1 35 0 2950 192 23 158 chr13 6468362 6469651 -95403518 + MER52A LTR ERV1 641 1755 0 2143 114 0 13 chr13 6472566 6472872 -95400297 + AluSx SINE Alu 1 302 -10 180 138 0 0 chr13 6473270 6473299 -95399870 + L2 LINE L2 3285 3313 0 334 316 53 18 chr13 6473329 6473500 -95399669 - MIR SINE MIR -7 255 79 360 294 28 0 chr13 6474688 6474797 -95398372 + MER81 DNA DNA 3 114 0 243 347 9 110 chr13 6474894 6475113 -95398056 + L2 LINE L2 2990 3186 -86 221 56 0 28 chr13 6475699 6475735 -95397434 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1310 118 68 27 chr13 6475851 6476072 -95397097 + MER30 DNA MER1_type 1 230 0 635 266 234 13 chr13 6476669 6477063 -95396106 + LTR33A LTR ERVL 5 485 -38 381 165 106 0 chr13 6477264 6477349 -95395820 - MER20 DNA MER1_type -31 188 95 552 239 9 0 chr13 6477446 6477555 -95395614 - FLAM_A SINE Alu -21 121 12 1867 163 3 6 chr13 6477597 6477910 -95395259 - AluSx SINE Alu 0 312 1 188 355 45 18 chr13 6480054 6480164 -95393005 + MIR SINE MIR 19 131 -77 2061 133 0 0 chr13 6481110 6481412 -95391757 + AluSg SINE Alu 1 302 -8 908 138 6 94 chr13 6482361 6482542 -95390627 - FRAM SINE Alu -1 165 1 229 309 56 40 chr13 6482588 6482714 -95390455 - L2 LINE L2 0 3272 3145 7233 163 28 27 chr13 6483137 6485174 -95387995 + L1MA8 LINE L1 3868 5923 -368 566 165 18 9 chr13 6485939 6486048 -95387121 + MER119 DNA MER1_type 474 583 0 389 230 216 14 chr13 6486726 6486865 -95386304 - MIR SINE MIR -83 179 13 1317 189 24 8 chr13 6487024 6487278 -95385891 + L1M3 LINE L1 5428 5685 -498 1784 114 67 0 chr13 6487279 6487620 -95385549 - L1PA11 LINE L1 -3 6171 5808 29 0 0 0 chr13 6488045 6488074 -95385095 + AT_rich Low_complexity Low_complexity 1 29 0 647 227 0 7 chr13 6488075 6488216 -95384953 - FLAM_C SINE Alu -2 141 2 2148 108 3 0 chr13 6490304 6490600 -95382569 + AluSg SINE Alu 1 297 -13 1617 225 36 0 chr13 6490939 6491272 -95381897 - MER7A DNA MER2_type -1 345 3 560 316 90 63 chr13 6491451 6492119 -95381050 - L1M4 LINE L1 -2985 3161 2476 1658 208 73 32 chr13 6492176 6492247 -95380922 + L1ME3A LINE L1 5391 5458 -712 2468 190 48 18 chr13 6492247 6492752 -95380417 + MLT2B1 LTR ERVL 1 520 0 1658 208 73 32 chr13 6492752 6492884 -95380285 + L1ME3A LINE L1 5458 5583 -587 1489 206 94 133 chr13 6492884 6493641 -95379528 + LTR8A LTR ERV1 1 727 0 1658 208 73 32 chr13 6493641 6493969 -95379200 + L1ME3A LINE L1 5583 5945 -225 998 180 46 14 chr13 6493969 6494186 -95378983 + AluJo SINE Alu 81 304 -8 613 241 116 15 chr13 6494186 6494385 -95378784 + L1ME3A LINE L1 5952 6170 0 442 291 84 11 chr13 6494485 6494664 -95378505 - MIR SINE MIR -32 230 39 1326 157 17 8 chr13 6495503 6495739 -95377430 - L1MA6 LINE L1 -231 6069 5832 1242 106 55 0 chr13 6495739 6495934 -95377235 + L1MA6 LINE L1 6091 6300 0 2142 117 0 0 chr13 6495943 6496252 -95376917 + AluSc SINE Alu 1 309 0 530 301 11 22 chr13 6497616 6497799 -95375370 + MER5A DNA MER1_type 3 183 -6 239 242 32 0 chr13 6500296 6500358 -95372811 + LTR67 LTR ERVL 4 67 -490 738 249 47 9 chr13 6501709 6501922 -95371247 + MER58A DNA MER1_type 1 221 -3 2327 65 0 7 chr13 6502261 6502555 -95370614 + AluY SINE Alu 1 292 -19 2017 113 0 7 chr13 6502766 6503071 -95370098 + AluSg SINE Alu 1 303 0 469 0 0 71 chr13 6503103 6503173 -95369996 - L1PA6 LINE L1 0 6154 6090 4798 240 44 23 chr13 6503602 6503975 -95369194 + L1M4 LINE L1 11 375 -6167 1726 149 43 4 chr13 6503975 6504256 -95368913 - AluSx SINE Alu -20 292 1 4798 240 44 23 chr13 6504256 6505127 -95368042 + L1M4 LINE L1 375 1281 -5261 189 315 176 23 chr13 6505128 6505474 -95367695 - L2 LINE L2 -694 2620 2222 1417 188 41 80 chr13 6505678 6506040 -95367129 + MLT1A1 LTR MaLR 1 348 -17 437 217 19 9 chr13 6506054 6506160 -95367009 + MER53 DNA DNA 34 140 -49 421 306 56 19 chr13 6507382 6507542 -95365627 + MIR SINE MIR 1 166 -96 767 186 70 12 chr13 6509444 6509616 -95363553 - MER53 DNA DNA 0 189 8 248 247 161 21 chr13 6510253 6510346 -95362823 - L3 LINE CR1 -375 1202 1097 1929 135 0 13 chr13 6510356 6510660 -95362509 + AluSx SINE Alu 1 300 -12 186 395 0 12 chr13 6510799 6510885 -95362284 - L3 LINE CR1 -634 943 859 809 108 0 17 chr13 6510919 6511039 -95362130 - FLAM_C SINE Alu -19 124 7 2865 3 0 0 chr13 6512928 6513244 -95359925 - AluYb8 SINE Alu -2 316 1 185 378 22 0 chr13 6513496 6513586 -95359583 + MIR SINE MIR 57 148 -114 293 316 75 23 chr13 6513739 6513913 -95359256 + L1MC/D LINE L1 5533 5715 -2093 25 0 0 0 chr13 6514054 6514079 -95359090 + AT_rich Low_complexity Low_complexity 1 25 0 851 206 16 22 chr13 6514085 6514269 -95358900 - AluJo SINE Alu -10 302 120 180 0 0 0 chr13 6514445 6514465 -95358704 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 374 254 90 8 chr13 6515955 6516089 -95357080 + L1MA9 LINE L1 5996 6140 -172 384 340 107 40 chr13 6516344 6516948 -95356221 + L2 LINE L2 2639 3269 -3 466 322 84 10 chr13 6517227 6517429 -95355740 + MIR SINE MIR 12 228 -34 250 257 14 57 chr13 6517478 6517548 -95355621 - MIR SINE MIR -180 82 16 724 251 33 5 chr13 6518143 6518358 -95354811 - L1PA16 LINE L1 -1 6165 5945 331 56 0 19 chr13 6518500 6518554 -95354615 - AluSc SINE Alu 0 299 247 521 291 132 24 chr13 6520409 6520660 -95352509 - L2 LINE L2 -5 3308 3031 * 526 269 59 90 chr13 6520630 6520687 -95352482 + MIR SINE MIR 14 71 -191 1911 186 38 28 chr13 6520687 6521084 -95352085 + MER57A LTR ERV1 1 401 -2 526 269 59 90 chr13 6521084 6521282 -95351887 + MIR SINE MIR 71 261 -1 2475 139 67 5 chr13 6521309 6521755 -95351414 + L1MB2 LINE L1 5689 6162 -9 235 297 59 30 chr13 6521850 6521951 -95351218 - MER91C DNA MER1_type -28 112 9 510 264 76 156 chr13 6521988 6522591 -95350578 - LTR67 LTR ERVL -1 556 2 209 273 61 68 chr13 6523147 6523279 -95349890 - L2 LINE L2 -1429 1885 1755 367 323 83 0 chr13 6524261 6524394 -95348775 + MIR SINE MIR 93 236 -26 1242 254 59 67 chr13 6524706 6525230 -95347939 - MLT2B1 LTR ERVL 0 520 1 3306 171 11 19 chr13 6526139 6526770 -95346399 + L1PA13 LINE L1 4127 4754 -1392 5555 98 44 43 chr13 6526770 6527779 -95345390 + L1PA13 LINE L1 5151 6161 -2 3306 171 11 19 chr13 6527779 6527791 -95345378 + L1PA13 LINE L1 4754 4765 -1381 1935 123 3 0 chr13 6527800 6528084 -95345085 + AluSx SINE Alu 23 307 -5 433 320 39 0 chr13 6529357 6529485 -95343684 + MIR SINE MIR 71 203 -59 556 330 56 26 chr13 6529705 6529938 -95343231 - MIR SINE MIR -2 260 21 1376 187 88 38 chr13 6530742 6531045 -95342124 - L1MD3 LINE L1 -232 7763 7440 2008 194 14 6 chr13 6531045 6531405 -95341764 - MLT1A1 LTR MaLR -2 363 1 1376 187 88 38 chr13 6531405 6531443 -95341726 - L1MD3 LINE L1 -555 7440 7405 239 323 135 51 chr13 6531628 6532319 -95340850 - L2 LINE L2 -2358 956 208 639 174 25 0 chr13 6532369 6532490 -95340679 + L1MA8 LINE L1 6164 6287 -4 219 341 81 8 chr13 6532500 6532623 -95340546 - L2 LINE L2 -1 3271 3140 249 83 0 0 chr13 6533039 6533075 -95340094 + (CA)n Simple_repeat Simple_repeat 1 36 0 299 264 72 42 chr13 6533177 6533344 -95339825 - MIR3 SINE MIR -16 192 21 377 287 31 47 chr13 6533755 6533884 -95339285 + MIR SINE MIR 8 134 -128 5140 133 9 56 chr13 6533902 6534747 -95338422 - L1PA14 LINE L1 -1 6160 5375 1536 150 87 0 chr13 6534747 6535001 -95338168 - AluSg SINE Alu -34 276 1 5140 133 9 56 chr13 6535001 6535743 -95337426 - L1PA14 LINE L1 -786 5375 4600 2087 157 16 0 chr13 6535743 6536107 -95337062 + L1P LINE L1 3958 4327 -1819 202 299 102 16 chr13 6536108 6536235 -95336934 + MIR SINE MIR 125 262 0 219 266 0 110 chr13 6536443 6536511 -95336658 - L2 LINE L2 -20 3293 3239 2106 93 0 0 chr13 6536511 6536816 -95336353 + AluY SINE Alu 1 305 0 219 266 0 110 chr13 6536816 6536855 -95336314 - L2 LINE L2 -74 3239 3197 376 294 9 0 chr13 6537352 6537461 -95335708 + MIR SINE MIR 116 225 -37 1521 48 0 5 chr13 6538512 6538698 -95334471 + L1PA3 LINE L1 5968 6152 -3 255 61 0 0 chr13 6538742 6538775 -95334394 + (GA)n Simple_repeat Simple_repeat 1 33 0 595 138 0 0 chr13 6538775 6538862 -95334307 + LTR34 LTR ERV1 582 668 -31 442 243 115 40 chr13 6539121 6539269 -95333900 - L2 LINE L2 -1 3312 3154 368 284 12 77 chr13 6539977 6540146 -95333023 - MIR3 SINE MIR 0 208 51 182 278 33 44 chr13 6540161 6540251 -95332918 + L2 LINE L2 3184 3272 0 689 259 96 23 chr13 6540253 6540473 -95332696 - MIR SINE MIR -26 236 1 247 283 30 50 chr13 6542222 6542321 -95330848 - MIR3 SINE MIR -27 181 85 2077 118 7 0 chr13 6542601 6542906 -95330263 - AluSx SINE Alu -5 307 1 1237 131 10 5 chr13 6544040 6544239 -95328930 - AluJb SINE Alu 0 312 113 214 345 52 17 chr13 6544284 6544400 -95328769 - MIR SINE MIR -23 239 120 722 257 53 18 chr13 6544450 6544668 -95328501 + MIR SINE MIR 5 223 -39 193 271 21 0 chr13 6545373 6545421 -95327748 - L3 LINE CR1 -667 910 862 362 228 11 33 chr13 6545453 6545545 -95327624 + MER5B DNA MER1_type 89 178 0 242 211 18 0 chr13 6546311 6546368 -95326801 + MER94 DNA DNA 2 59 -75 320 307 161 21 chr13 6547433 6547713 -95325456 + L3 LINE CR1 1240 1558 -19 511 206 163 14 chr13 6548453 6548594 -95324575 + MIR SINE MIR 92 253 -9 1453 178 8 4 chr13 6549208 6549472 -95323697 + AluJo SINE Alu 18 282 -30 243 21 0 64 chr13 6549476 6549523 -95323646 + (CAA)n Simple_repeat Simple_repeat 2 45 0 246 372 0 12 chr13 6550266 6550352 -95322817 + MIR3 SINE MIR 113 197 -11 1240 178 26 42 chr13 6550547 6550811 -95322358 + MIR SINE MIR 2 261 -1 282 29 0 0 chr13 6550829 6550864 -95322305 + (GA)n Simple_repeat Simple_repeat 2 36 0 303 251 277 26 chr13 6550864 6550903 -95322266 - MIR SINE MIR -13 249 221 1871 161 0 3 chr13 6550903 6551201 -95321968 - AluJb SINE Alu -15 297 1 303 251 277 26 chr13 6551201 6551356 -95321813 - MIR SINE MIR -41 221 6 2194 104 7 0 chr13 6553507 6553814 -95319355 - AluSx SINE Alu -3 309 1 2794 13 0 0 chr13 6554474 6554789 -95318380 + AluYb8 SINE Alu 1 315 -3 604 251 161 5 chr13 6556841 6557040 -95316129 + MIR SINE MIR 33 262 0 481 240 281 20 chr13 6558223 6558419 -95314750 + MIR SINE MIR 1 247 -15 1622 185 0 7 chr13 6559067 6559359 -95313810 + AluJo SINE Alu 1 290 -22 2218 97 3 0 chr13 6560551 6560849 -95312320 + AluSq SINE Alu 3 301 -12 952 124 7 0 chr13 6560849 6560986 -95312183 + AluSq SINE Alu 137 274 -39 198 128 0 0 chr13 6560997 6561036 -95312133 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 256 316 140 35 chr13 6561529 6561700 -95311469 + MIR SINE MIR 9 197 -65 1731 130 0 11 chr13 6561846 6562116 -95311053 - AluSx SINE Alu -11 301 35 242 139 0 0 chr13 6563133 6563169 -95310000 - U2 snRNA snRNA -152 36 1 224 398 17 0 chr13 6563606 6563724 -95309445 + MIR SINE MIR 20 139 -123 947 174 6 0 chr13 6566356 6566523 -95306646 + FRAM SINE Alu 2 169 -7 517 237 26 84 chr13 6566705 6566895 -95306274 + MIR3 SINE MIR 19 197 -11 451 255 226 41 chr13 6566879 6567507 -95305662 + L2 LINE L2 2479 3263 -50 * 233 95 0 24 chr13 6567510 6567552 -95305617 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 560 68 0 0 chr13 6567652 6567726 -95305443 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 228 198 185 25 chr13 6567828 6567909 -95305260 + MIR SINE MIR 83 176 -86 841 144 8 15 chr13 6568018 6568150 -95305019 + FLAM_C SINE Alu 1 131 -2 513 275 8 8 chr13 6568176 6568307 -95304862 - MIR SINE MIR -14 248 118 315 254 0 0 chr13 6568846 6568913 -95304256 + L2 LINE L2 3201 3267 -5 373 278 26 17 chr13 6568920 6569035 -95304134 - MIR SINE MIR -69 139 24 2550 49 0 0 chr13 6569127 6569433 -95303736 - AluY SINE Alu -5 306 1 23 33 0 0 chr13 6569911 6569941 -95303228 + AT_rich Low_complexity Low_complexity 1 30 0 846 178 79 35 chr13 6569959 6570161 -95303008 - L1MB2 LINE L1 -36 6135 5925 22 0 0 0 chr13 6571302 6571324 -95301845 + AT_rich Low_complexity Low_complexity 1 22 0 1672 163 3 0 chr13 6571324 6571607 -95301562 - AluJo SINE Alu -22 290 7 879 209 0 16 chr13 6571813 6571995 -95301174 - AluJb SINE Alu -4 308 130 603 213 124 6 chr13 6572928 6573083 -95300086 - MER5A DNA MER1_type -6 183 4 282 313 42 7 chr13 6573141 6573285 -95299884 + MER103 DNA DNA 6 154 -12 2283 91 0 0 chr13 6573507 6573803 -95299366 + AluSx SINE Alu 1 296 -16 312 360 85 0 chr13 6574168 6574379 -95298790 - MIR SINE MIR -8 254 26 411 56 0 0 chr13 6574426 6574480 -95298689 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1486 195 14 34 chr13 6574480 6574636 -95298533 - AluJo SINE Alu -26 286 137 1849 144 0 63 chr13 6574636 6574955 -95298214 - AluJo SINE Alu -11 301 3 1486 195 14 34 chr13 6574955 6575090 -95298079 - AluJo SINE Alu -175 137 1 260 228 120 0 chr13 6575234 6575326 -95297843 - L1ME4a LINE L1 -13 6108 6006 557 60 0 12 chr13 6576061 6576144 -95297025 + (TC)n Simple_repeat Simple_repeat 2 83 0 246 264 210 24 chr13 6577789 6577956 -95295213 + MIR SINE MIR 40 237 -25 956 110 0 41 chr13 6578912 6579058 -95294111 - FLAM_C SINE Alu -3 140 1 302 240 88 104 chr13 6579345 6579537 -95293632 - MER5A DNA MER1_type 0 189 1 2110 121 0 0 chr13 6580720 6581002 -95292167 + AluSx SINE Alu 1 282 -30 1295 152 110 132 chr13 6581045 6581507 -95291662 + L1MB2 LINE L1 5481 5932 -239 2137 73 42 35 chr13 6581668 6581955 -95291214 + AluY SINE Alu 1 289 -22 1960 112 4 0 chr13 6581953 6582220 -95290949 + AluSg1 SINE Alu 27 294 -15 * 225 0 0 0 chr13 6582810 6582835 -95290334 + (TA)n Simple_repeat Simple_repeat 2 26 0 799 22 0 0 chr13 6582835 6582926 -95290243 - L1PA5 LINE L1 -16 6138 6048 2436 51 0 29 chr13 6586764 6587077 -95286092 - AluY SINE Alu -7 304 1 22 0 0 0 chr13 6587209 6587231 -95285938 + AT_rich Low_complexity Low_complexity 1 22 0 239 313 69 19 chr13 6587299 6587459 -95285710 - L1M2 LINE L1 -4392 2457 2290 567 223 23 0 chr13 6587462 6587592 -95285577 - L1MA10 LINE L1 -1 6333 6201 2170 107 0 0 chr13 6587592 6587873 -95285296 + AluSg SINE Alu 1 281 -29 7016 226 76 15 chr13 6587926 6590863 -95282306 - L1ME4a LINE L1 -151 6015 2894 991 140 18 12 chr13 6590864 6591028 -95282141 + THE1C LTR MaLR 1 165 -210 383 202 50 20 chr13 6591952 6592051 -95281118 + MLT1C-int LTR MaLR 1269 1370 -1 1203 199 205 13 chr13 6592052 6592438 -95280731 + MLT1C LTR MaLR 1 460 -7 1129 115 0 12 chr13 6592520 6592685 -95280484 + L1PA8 LINE L1 6001 6163 -9 812 168 0 0 chr13 6594068 6594199 -95278970 + FLAM_C SINE Alu 3 133 0 1978 167 0 0 chr13 6594232 6594538 -95278631 + AluJb SINE Alu 1 306 -6 331 346 82 0 chr13 6594923 6595105 -95278064 + MIR SINE MIR 14 210 -52 1855 171 0 7 chr13 6595361 6595660 -95277509 - AluJb SINE Alu -15 297 1 780 253 127 0 chr13 6595660 6595897 -95277272 + MER58B DNA MER1_type 75 341 0 218 56 28 0 chr13 6597036 6597072 -95276097 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 386 239 57 18 chr13 6597152 6597361 -95275808 - Charlie7 DNA MER1_type 0 2612 2317 21 0 0 0 chr13 6597368 6597389 -95275780 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr13 6597632 6597662 -95275507 + (CA)n Simple_repeat Simple_repeat 2 31 0 228 125 0 0 chr13 6597896 6597928 -95275241 - Charlie7 DNA MER1_type -1479 1133 1102 184 244 78 44 chr13 6598476 6598566 -95274603 + L2 LINE L2 3164 3256 -16 218 260 10 62 chr13 6598568 6598664 -95274505 + (TGGG)n Simple_repeat Simple_repeat 2 92 0 2880 162 53 18 chr13 6599331 6599893 -95273276 + L1MB3 LINE L1 5601 6182 -1 21 0 0 0 chr13 6599893 6599914 -95273255 + AT_rich Low_complexity Low_complexity 1 21 0 1483 158 11 67 chr13 6600067 6600217 -95272952 - AluJb SINE Alu -24 288 131 192 40 0 0 chr13 6600217 6600242 -95272927 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1889 114 42 0 chr13 6600243 6600507 -95272662 - AluSq SINE Alu -30 283 9 1483 158 11 67 chr13 6600507 6600638 -95272531 - AluJb SINE Alu -180 132 21 731 135 92 0 chr13 6602759 6602896 -95270273 - LTR12 LTR ERV1 0 714 270 2831 182 118 39 chr13 6602896 6603533 -95269636 - LTR12 LTR ERV1 0 688 2 860 206 34 48 chr13 6603716 6604008 -95269161 - pTR5 LTR ERV1 -1410 1028 741 268 350 61 19 chr13 6604650 6604864 -95268305 - L1ME LINE L1 -523 5598 5376 207 191 0 0 chr13 6605079 6605126 -95268043 + T-rich Low_complexity Low_complexity 1 47 0 589 264 96 42 chr13 6605160 6605624 -95267545 - L1ME LINE L1 -1487 4659 4167 1636 170 3 23 chr13 6605624 6605930 -95267239 - AluJo SINE Alu -12 300 1 589 264 96 42 chr13 6605930 6605942 -95267227 - L1ME LINE L1 -1979 4167 4157 5354 59 6 1 chr13 6606184 6606849 -95266320 - L1PA7 LINE L1 -15 6139 5472 293 271 67 36 chr13 6607122 6607323 -95265846 - L1ME1 LINE L1 -204 5962 5758 185 255 43 0 chr13 6607472 6607519 -95265650 + L2 LINE L2 3249 3297 -16 785 281 166 31 chr13 6607569 6608984 -95264185 - L1ME1 LINE L1 -598 5572 3953 21 36 0 0 chr13 6609057 6609085 -95264084 + AT_rich Low_complexity Low_complexity 1 28 0 1339 176 4 4 chr13 6609274 6609535 -95263634 - L1MA5A LINE L1 -923 5223 4963 * 5757 139 34 13 chr13 6609520 6610101 -95263068 + L1MA5A LINE L1 5209 5827 -470 279 0 0 0 chr13 6610101 6610132 -95263037 + (CA)n Simple_repeat Simple_repeat 2 32 0 5757 139 34 13 chr13 6610132 6610584 -95262585 + L1MA5A LINE L1 5827 6268 -29 28 0 0 0 chr13 6610596 6610624 -95262545 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr13 6612636 6612665 -95260504 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1907 173 42 75 chr13 6613811 6614239 -95258930 + MLT2D LTR ERVL 1 414 0 219 299 120 8 chr13 6615952 6616069 -95257100 + MIR SINE MIR 81 210 -52 1766 79 9 0 chr13 6616260 6616488 -95256681 + MER30 DNA MER1_type 1 230 0 2203 168 23 44 chr13 6617268 6617703 -95255466 + MSTB LTR MaLR 1 426 0 1330 87 0 12 chr13 6617981 6618153 -95255016 - AluSx SINE Alu -142 170 1 5039 126 23 88 chr13 6618153 6619169 -95254000 + Tigger3b DNA MER2_type 282 1231 0 4046 208 45 13 chr13 6619178 6620329 -95252840 + L1MB8 LINE L1 4316 5505 -675 1111 176 24 0 chr13 6620329 6620539 -95252630 + L1MB2 LINE L1 5950 6164 -7 3451 161 24 15 chr13 6620569 6621228 -95251941 + L1MB8 LINE L1 5514 6178 0 265 108 0 0 chr13 6621482 6621519 -95251650 - U2 snRNA snRNA -151 37 1 1726 185 18 0 chr13 6621835 6622121 -95251048 + AluJo SINE Alu 1 291 -21 1002 171 37 180 chr13 6622121 6622250 -95250919 + MLT1A2 LTR MaLR 34 89 -285 1461 133 41 5 chr13 6622250 6622468 -95250701 + AluJo SINE Alu 14 239 -73 1002 171 37 180 chr13 6622468 6622665 -95250504 + MLT1A2 LTR MaLR 89 313 -61 1704 140 92 4 chr13 6622924 6623196 -95249973 + AluSx SINE Alu 1 296 -16 267 301 21 11 chr13 6624197 6624290 -95248879 + L2 LINE L2 3179 3272 0 211 64 21 43 chr13 6624715 6624762 -95248407 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4572 219 135 108 chr13 6624813 6625109 -95248060 + L1MD1 LINE L1 2620 2906 -3240 2278 118 0 6 chr13 6625109 6625422 -95247747 + AluSx SINE Alu 1 311 -1 4572 219 135 108 chr13 6625422 6626582 -95246587 + L1MD1 LINE L1 2906 4033 -2113 342 0 0 0 chr13 6626582 6626620 -95246549 + (CA)n Simple_repeat Simple_repeat 1 38 0 4572 219 135 108 chr13 6626620 6626688 -95246481 + L1MD1 LINE L1 4033 4098 -2048 1379 113 0 10 chr13 6626688 6626892 -95246277 + AluSc SINE Alu 83 284 -25 4572 219 135 108 chr13 6626892 6627731 -95245438 + L1MD1 LINE L1 4098 5261 -885 1061 187 93 45 chr13 6627728 6628017 -95245152 + L1MD1 LINE L1 5855 6157 -85 * 186 143 0 0 chr13 6630996 6631031 -95242138 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 28 71 0 0 chr13 6631094 6631150 -95242019 + AT_rich Low_complexity Low_complexity 1 56 0 200 111 28 0 chr13 6632115 6632151 -95241018 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 195 197 61 76 chr13 6632775 6632841 -95240328 - MIR SINE MIR -21 241 177 537 288 113 0 chr13 6632847 6633007 -95240162 + MER5B DNA MER1_type 1 178 0 820 207 0 0 chr13 6633019 6633169 -95240000 + MLT1A1 LTR MaLR 1 150 -215 675 238 33 0 chr13 6633249 6633400 -95239769 - MER5A DNA MER1_type 0 189 34 303 310 93 81 chr13 6633474 6633797 -95239372 + L2 LINE L2 2896 3222 -50 204 301 118 0 chr13 6635266 6635359 -95237810 + MIR SINE MIR 31 134 -128 467 269 39 19 chr13 6635399 6635555 -95237614 - MER105 DNA DNA -21 183 25 251 280 80 0 chr13 6636225 6636300 -95236869 + MIR SINE MIR 62 142 -66 1709 148 3 27 chr13 6636572 6636869 -95236300 - AluJo SINE Alu -22 290 1 608 229 7 33 chr13 6637205 6637358 -95235811 + MIR SINE MIR 104 252 -10 2082 112 7 0 chr13 6639443 6639746 -95233423 + AluSx SINE Alu 1 305 -7 1212 219 33 17 chr13 6640268 6640570 -95232599 + L1MC2 LINE L1 6029 6335 -9 301 241 68 30 chr13 6640571 6640704 -95232465 + L1ME4a LINE L1 5982 6119 -2 274 308 64 41 chr13 6641133 6641305 -95231864 + MIR SINE MIR 81 256 -6 252 339 54 32 chr13 6641408 6641594 -95231575 + MIR3 SINE MIR 3 192 -16 590 329 57 5 chr13 6641971 6642181 -95230988 - MIR SINE MIR -25 237 17 2416 44 3 19 chr13 6642390 6642705 -95230464 + AluY SINE Alu 1 310 -1 180 207 17 69 chr13 6642928 6642986 -95230183 - MIR3 SINE MIR -24 184 130 350 275 11 11 chr13 6643219 6643310 -95229859 + MIR SINE MIR 172 262 0 3604 134 28 13 chr13 6643708 6644322 -95228847 + L1MB3 LINE L1 5559 6181 -2 352 250 130 29 chr13 6644736 6644838 -95228331 + MIR SINE MIR 45 154 -66 1821 132 35 0 chr13 6644843 6645131 -95228038 + AluSq SINE Alu 3 300 -13 1045 221 38 38 chr13 6645139 6645401 -95227768 + MLT1E LTR MaLR 332 593 0 1807 240 73 22 chr13 6645403 6645949 -95227220 - L1ME3 LINE L1 -104 6058 5485 364 250 23 0 chr13 6645952 6646040 -95227129 + MIR SINE MIR 117 206 -56 223 222 123 37 chr13 6646097 6646178 -95226991 - MIR SINE MIR -166 96 9 6310 178 40 3 chr13 6646523 6647983 -95225186 + ERVL LTR ERVL 4130 5698 -66 7511 37 8 6 chr13 6648070 6649532 -95223637 - L1PA4 LINE L1 -3 6152 4688 1901 173 42 75 chr13 6651143 6651571 -95221598 - MLT2D LTR ERVL 0 414 1 257 214 57 29 chr13 6652520 6652590 -95220579 - LTR33 LTR ERVL -2 519 448 559 262 115 16 chr13 6652700 6652883 -95220286 - LTR33 LTR ERVL -319 202 2 188 280 217 35 chr13 6653125 6653268 -95219901 - L2 LINE L2 -10 3262 3094 684 168 18 0 chr13 6653426 6653539 -95219630 - FLAM_C SINE Alu -18 115 1 774 177 8 0 chr13 6653612 6653736 -95219433 + FLAM_C SINE Alu 2 126 -17 2293 92 0 0 chr13 6653752 6654058 -95219111 + AluSx SINE Alu 1 306 -6 360 229 14 0 chr13 6654125 6654195 -95218974 - L2 LINE L2 -18 3254 3184 2327 97 3 0 chr13 6654244 6654554 -95218615 + AluSp SINE Alu 1 311 -2 557 49 12 0 chr13 6654742 6654823 -95218346 + (CA)n Simple_repeat Simple_repeat 1 82 0 2008 188 261 12 chr13 6654919 6655521 -95217648 + Tigger3(Golem) DNA MER2_type 2278 3029 0 1101 204 92 55 chr13 6655536 6655938 -95217231 - MLT2B1 LTR ERVL -40 475 13 274 239 42 14 chr13 6655946 6656017 -95217152 - HERVL-B1 LTR ERVL 0 5654 5582 775 72 0 0 chr13 6656021 6656118 -95217051 + L1PA4 LINE L1 2 98 -6048 * 39032 38 9 1 chr13 6656116 6661606 -95211563 + L1PA4 LINE L1 623 6152 -3 6310 173 31 9 chr13 6661693 6663858 -95209311 - ERVL LTR ERVL -66 5698 3433 1765 128 15 15 chr13 6663865 6664130 -95209039 - ERVL LTR ERVL -2909 2855 2591 * 3525 173 5 9 chr13 6664115 6664149 -95209020 - ERVL LTR ERVL -3432 2332 2299 1461 159 120 19 chr13 6664149 6664457 -95208712 + MER44D DNA MER2_type 1 609 0 3525 173 5 9 chr13 6664457 6665001 -95208168 - ERVL LTR ERVL -3465 2299 1756 835 211 0 0 chr13 6665032 6665188 -95207981 - FRAM SINE Alu -19 157 2 7769 207 70 10 chr13 6665188 6666838 -95206331 - ERVL LTR ERVL -4013 1751 2 291 143 0 57 chr13 6666839 6666909 -95206260 - MLT2B1 LTR ERVL 0 554 455 181 156 16 16 chr13 6666911 6666975 -95206194 + (TA)n Simple_repeat Simple_repeat 2 65 0 216 0 0 0 chr13 6666982 6667006 -95206163 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 2103 177 144 14 chr13 6667006 6667429 -95205740 - MLT2B1 LTR ERVL -42 478 1 583 82 27 49 chr13 6669299 6669482 -95203687 + (CA)n Simple_repeat Simple_repeat 1 179 0 553 83 29 51 chr13 6669501 6669858 -95203311 + (CA)n Simple_repeat Simple_repeat 1 348 0 389 141 34 40 chr13 6669924 6670101 -95203068 + (CA)n Simple_repeat Simple_repeat 1 176 0 268 142 43 43 chr13 6670123 6670285 -95202884 + (CA)n Simple_repeat Simple_repeat 1 162 0 332 144 11 61 chr13 6670345 6670526 -95202643 + (CA)n Simple_repeat Simple_repeat 1 172 0 273 130 24 49 chr13 6670579 6670702 -95202467 + (CA)n Simple_repeat Simple_repeat 1 120 0 340 190 33 37 chr13 6670728 6671201 -95201968 + (CA)n Simple_repeat Simple_repeat 1 471 0 188 341 57 0 chr13 6672408 6672531 -95200638 + L2 LINE L2 2927 3056 -257 247 295 48 19 chr13 6674147 6674252 -95198917 + MIR SINE MIR 116 223 -39 219 132 0 53 chr13 6677948 6678024 -95195145 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 336 276 45 35 chr13 6678621 6678776 -95194393 + MLT1E3 LTR MaLR 243 406 -218 180 216 0 0 chr13 6679500 6679551 -95193618 + T-rich Low_complexity Low_complexity 1 51 0 186 156 0 0 chr13 6680180 6680212 -95192957 + L2 LINE L2 3241 3272 0 232 272 136 19 chr13 6680399 6680502 -95192667 - L1MC4 LINE L1 -1 8041 7927 396 371 84 16 chr13 6680953 6681322 -95191847 - L1ME LINE L1 -472 5698 5305 388 318 95 56 chr13 6681486 6681714 -95191455 - L1ME LINE L1 -838 5308 5090 2055 110 40 0 chr13 6681714 6682014 -95191155 + AluSx SINE Alu 1 312 0 388 318 95 56 chr13 6682014 6682354 -95190815 - L1ME LINE L1 -1056 5090 4765 3931 179 51 60 chr13 6682354 6683317 -95189852 - LTR13 LTR ERVK 0 954 1 388 318 95 56 chr13 6683317 6684019 -95189150 - L1ME LINE L1 -1381 4765 3987 197 132 26 0 chr13 6685801 6685839 -95187330 + (TA)n Simple_repeat Simple_repeat 1 39 0 1304 96 0 119 chr13 6685858 6686119 -95187050 - AluSc SINE Alu -7 302 73 1464 172 62 0 chr13 6686139 6686395 -95186774 - L1MC3 LINE L1 -830 6955 6684 1330 262 51 0 chr13 6686399 6686811 -95186358 + L1MB8 LINE L1 1046 1478 -4906 677 192 7 34 chr13 6686812 6686958 -95186211 - MER4D LTR ERV1 0 903 762 2931 117 60 7 chr13 6686964 6687418 -95185751 + MER9 LTR ERVK 34 511 0 2320 174 30 111 chr13 6687418 6688119 -95185050 - MER4E LTR ERV1 -135 644 1 1146 261 127 40 chr13 6688126 6688904 -95184265 + L1MB8 LINE L1 1632 2477 -4086 712 182 15 15 chr13 6688918 6689050 -95184119 + FLAM_C SINE Alu 1 132 -1 8034 66 6 5 chr13 6689063 6690069 -95183100 + LTR13 LTR ERVK 1 1007 0 1128 101 6 24 chr13 6690069 6690237 -95182932 + AluSg/x SINE Alu 139 303 -7 10660 218 36 36 chr13 6690238 6690398 -95182771 + L1MB8 LINE L1 2449 2608 -3962 1978 149 0 0 chr13 6690398 6690700 -95182469 + AluSg SINE Alu 1 302 -8 10660 218 36 36 chr13 6690700 6692313 -95180856 + L1MB8 LINE L1 2608 4220 -2350 2185 105 0 0 chr13 6692313 6692607 -95180562 + AluSg SINE Alu 1 294 -16 10660 218 36 36 chr13 6692607 6694805 -95178364 + L1MB8 LINE L1 4220 6570 0 379 253 105 49 chr13 6694946 6695250 -95177919 + L1M4 LINE L1 3673 3993 -2153 489 310 104 51 chr13 6695276 6695727 -95177442 + REP3 LTR ERV 1 475 -87 21 36 0 0 chr13 6696025 6696053 -95177116 + AT_rich Low_complexity Low_complexity 1 28 0 438 244 0 0 chr13 6696565 6696655 -95176514 + LTR33A LTR ERVL 434 523 0 363 255 27 53 chr13 6696992 6697180 -95175989 + L1P4 LINE L1 4886 5068 -1078 1972 129 30 0 chr13 6697334 6697637 -95175532 + AluSx SINE Alu 1 312 0 335 305 48 32 chr13 6697678 6698011 -95175158 + L1P4 LINE L1 5254 5598 -568 1311 214 38 70 chr13 6698047 6698444 -95174725 - MLT1B LTR MaLR 0 390 7 337 106 0 0 chr13 6699335 6699382 -95173787 - MLT1E1 LTR MaLR -423 231 185 1065 242 36 4 chr13 6700343 6700664 -95172505 + MLT1A1 LTR MaLR 13 446 -21 477 200 62 31 chr13 6700808 6700938 -95172231 + MIR SINE MIR 50 183 -79 864 177 29 0 chr13 6701875 6702050 -95171119 + L1MB7 LINE L1 5288 5467 -707 698 155 8 25 chr13 6702067 6702306 -95170863 + GA-rich Low_complexity Low_complexity 1 234 0 447 188 21 31 chr13 6702472 6702568 -95170601 + L1MB7 LINE L1 5484 5578 -602 1046 233 43 30 chr13 6702608 6702909 -95170260 + L1MB7 LINE L1 5819 6123 -61 199 220 169 0 chr13 6702928 6702987 -95170182 - MIR SINE MIR -94 168 100 609 221 16 0 chr13 6707793 6707914 -95165255 - MER58B DNA MER1_type 0 341 219 1564 84 23 28 chr13 6707914 6708128 -95165041 + THE1B LTR MaLR 1 213 -151 1591 199 46 35 chr13 6709398 6709802 -95163367 + L1M2c LINE L1 1563 1974 -4875 1817 164 10 0 chr13 6709802 6710106 -95163063 + AluSx SINE Alu 3 309 -3 1591 199 46 35 chr13 6710106 6710133 -95163036 + L1M2c LINE L1 1974 1999 -4850 3597 176 11 28 chr13 6710148 6710251 -95162918 + L1M2c LINE L1 2230 2333 -4515 1734 163 10 7 chr13 6710251 6710552 -95162617 + AluSx SINE Alu 2 303 -9 3597 176 11 28 chr13 6710552 6711553 -95161616 + L1M2c LINE L1 2333 3319 -3529 1526 107 34 0 chr13 6711560 6711794 -95161375 + L1MA5 LINE L1 6056 6297 -3 1009 252 24 18 chr13 6711862 6712121 -95161048 - MLT1H LTR MaLR -248 301 1 4677 236 38 28 chr13 6712575 6713791 -95159378 + L1PA12 LINE L1 10 2319 -5265 3612 82 21 10 chr13 6713780 6714303 -95158866 + L1PA11 LINE L1 5259 5787 -387 * 21 0 0 0 chr13 6715010 6715031 -95158138 + AT_rich Low_complexity Low_complexity 1 21 0 2648 114 25 0 chr13 6715330 6715726 -95157443 + L1PA11 LINE L1 5769 6174 0 300 246 36 18 chr13 6715799 6715909 -95157260 - L1ME3 LINE L1 -2 6160 6049 * 2879 249 112 24 chr13 6715904 6716547 -95156622 - L1M4 LINE L1 -1130 5016 4431 1320 158 102 39 chr13 6716547 6716832 -95156337 - AluJo SINE Alu -9 303 1 2879 249 112 24 chr13 6716832 6717426 -95155743 - L1M4 LINE L1 -1715 4431 3670 189 222 22 0 chr13 6718197 6718242 -95154927 + MER5B DNA MER1_type 12 57 -121 558 43 0 0 chr13 6719528 6719597 -95153572 + (TA)n Simple_repeat Simple_repeat 2 70 0 2203 79 0 4 chr13 6719784 6720117 -95153052 + AluSq SINE Alu 5 336 0 460 290 192 30 chr13 6720121 6720559 -95152610 - L1ME4a LINE L1 -293 5828 5320 233 255 0 0 chr13 6721216 6721267 -95151902 + (TA)n Simple_repeat Simple_repeat 2 52 0 352 280 20 0 chr13 6723108 6723208 -95149961 + GA-rich Low_complexity Low_complexity 1 102 0 5528 152 52 11 chr13 6723342 6723607 -95149562 - L1MA8 LINE L1 0 6291 6039 2090 119 0 3 chr13 6723607 6723909 -95149260 + AluSq SINE Alu 3 303 -10 5528 152 52 11 chr13 6723909 6725098 -95148071 - L1MA8 LINE L1 -252 6039 4774 321 195 26 13 chr13 6725604 6725681 -95147488 + MER116 DNA Mariner 3 80 0 697 289 98 68 chr13 6725967 6726099 -95147070 - L1ME4a LINE L1 -847 5299 5172 1824 119 0 34 chr13 6726099 6726393 -95146776 - AluJb SINE Alu -15 297 14 465 164 0 0 chr13 6726337 6726404 -95146765 - AluJ/FLAM SINE Alu -243 69 3 * 697 289 98 68 chr13 6726404 6726731 -95146438 - L1ME4a LINE L1 -985 5161 4815 434 240 186 10 chr13 6726732 6726936 -95146233 - L1ME4a LINE L1 -1371 4775 4536 4485 267 110 35 chr13 6727055 6727109 -95146060 - L1ME LINE L1 -399 5763 5714 2053 132 3 0 chr13 6727109 6727405 -95145764 - AluSx SINE Alu -15 297 1 4485 267 110 35 chr13 6727405 6728735 -95144434 - L1ME LINE L1 -448 5714 4485 1821 148 0 30 chr13 6728735 6729039 -95144130 - AluJb SINE Alu -17 295 1 4485 267 110 35 chr13 6729039 6729274 -95143895 - L1ME LINE L1 -1677 4485 4269 333 0 0 0 chr13 6729274 6729311 -95143858 + (TG)n Simple_repeat Simple_repeat 1 37 0 4485 267 110 35 chr13 6729311 6729342 -95143827 - L1ME LINE L1 -1893 4269 4242 1944 143 13 7 chr13 6729342 6729650 -95143519 + AluSx SINE Alu 1 310 -2 4485 267 110 35 chr13 6729650 6730972 -95142197 - L1ME LINE L1 -1920 4242 2565 594 301 42 32 chr13 6731178 6731490 -95141679 - L1ME4a LINE L1 -1995 4151 3837 3252 135 22 15 chr13 6731579 6731891 -95141278 - L1PA16 LINE L1 -21 6145 5826 2383 104 0 0 chr13 6731891 6732198 -95140971 - AluSq SINE Alu -6 307 1 3252 135 22 15 chr13 6732198 6732425 -95140744 - L1PA16 LINE L1 -340 5826 5602 549 108 11 0 chr13 6732418 6732511 -95140658 - L1PA16 LINE L1 -774 5392 5299 * 1836 81 3 88 chr13 6732512 6732808 -95140361 - LTR14B LTR ERVK -321 287 17 385 309 121 18 chr13 6732901 6733066 -95140103 - MER5A DNA MER1_type 0 189 8 242 378 0 12 chr13 6733101 6733183 -95139986 - MER5A DNA MER1_type -31 158 78 2503 180 47 16 chr13 6733326 6733820 -95139349 - LTR22 LTR ERVK 0 509 1 1758 166 0 14 chr13 6733953 6734242 -95138927 + AluJo SINE Alu 1 285 -27 2356 101 0 3 chr13 6734253 6734561 -95138608 + AluSq SINE Alu 1 307 -6 435 287 161 36 chr13 6735757 6735980 -95137189 + MIR SINE MIR 2 252 -10 514 226 211 39 chr13 6736134 6736293 -95136876 - Charlie7 DNA MER1_type -3 2609 2479 2120 128 0 0 chr13 6736293 6736582 -95136587 - AluSc SINE Alu -20 289 1 514 226 211 39 chr13 6736582 6736759 -95136410 - Charlie7 DNA MER1_type -133 2479 2215 21 36 0 0 chr13 6736908 6736936 -95136233 + AT_rich Low_complexity Low_complexity 1 28 0 1843 150 37 0 chr13 6736941 6737235 -95135934 + AluSx SINE Alu 7 311 -1 1755 143 57 4 chr13 6737357 6737637 -95135532 - AluJo SINE Alu -16 296 2 649 173 7 115 chr13 6737660 6737799 -95135370 - FLAM_C SINE Alu -18 125 2 721 218 100 66 chr13 6737845 6738226 -95134943 - L1MC5 LINE L1 -285 7676 7283 2357 68 0 39 chr13 6738349 6738658 -95134511 - AluY SINE Alu -14 297 1 1812 155 4 0 chr13 6738699 6738996 -95134173 + AluJb SINE Alu 5 302 0 399 217 0 0 chr13 6739180 6739286 -95133883 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 632 282 160 29 chr13 6739289 6739601 -95133568 + MER115 DNA AcHobo 54 406 -287 780 202 5 72 chr13 6739618 6739811 -95133358 + MER115 DNA AcHobo 514 693 0 1751 57 17 26 chr13 6740366 6740596 -95132573 + AluY SINE Alu 83 310 -1 882 200 24 29 chr13 6741043 6741213 -95131956 - FRAM SINE Alu -10 166 1 21 0 0 0 chr13 6741606 6741627 -95131542 + AT_rich Low_complexity Low_complexity 1 21 0 546 284 62 8 chr13 6741896 6742153 -95131016 + L2 LINE L2 2010 2280 -1034 1688 147 34 4 chr13 6742183 6742448 -95130721 - AluJb SINE Alu -39 273 1 1238 274 43 29 chr13 6742448 6743156 -95130013 - L1ME LINE L1 -4823 1257 536 786 316 41 64 chr13 6743300 6743831 -95129338 - L1ME LINE L1 -5539 531 13 21 0 0 0 chr13 6744020 6744041 -95129128 + AT_rich Low_complexity Low_complexity 1 21 0 1840 171 0 3 chr13 6744046 6744345 -95128824 + AluJb SINE Alu 1 298 -14 430 219 57 19 chr13 6744475 6744580 -95128589 + MLT1J2 LTR MaLR 3 111 -339 447 292 105 28 chr13 6744642 6744840 -95128329 + MLT1J2 LTR MaLR 238 448 -2 671 209 95 0 chr13 6745219 6745367 -95127802 + L1PA16 LINE L1 5999 6160 -6 1069 61 30 0 chr13 6745571 6745702 -95127467 - AluYb8 SINE Alu -183 135 1 1208 167 23 0 chr13 6745751 6745967 -95127202 - L1MA4 LINE L1 -5 6295 6075 982 211 22 64 chr13 6746030 6746355 -95126814 - L1MB7 LINE L1 0 6321 6032 2179 91 66 90 chr13 6746726 6747132 -95126037 + LTR14B LTR ERVK 1 608 0 446 255 0 0 chr13 6747132 6747230 -95125939 - MIR SINE MIR -106 156 59 535 239 92 0 chr13 6747323 6747453 -95125716 - MIR SINE MIR -65 197 56 1551 191 26 26 chr13 6749311 6749620 -95123549 + AluJo SINE Alu 2 310 -2 204 309 0 15 chr13 6749635 6749703 -95123466 - MIR3 SINE MIR -32 176 110 344 208 78 0 chr13 6749776 6749853 -95123316 - MIR SINE MIR -60 148 66 1803 171 0 17 chr13 6749990 6750283 -95122886 - AluJo SINE Alu -24 288 1 22 0 0 0 chr13 6750702 6750724 -95122445 + AT_rich Low_complexity Low_complexity 1 22 0 384 262 72 42 chr13 6750833 6751373 -95121796 + L1MC/D LINE L1 4934 5483 -750 931 145 14 0 chr13 6751395 6751540 -95121629 + FAM SINE Alu 28 174 -11 1070 89 0 7 chr13 6751598 6751733 -95121436 - AluSq/x SINE Alu -179 134 1 904 136 80 2 chr13 6751844 6752114 -95121055 - MER1B DNA MER1_type -2 337 1 1199 111 0 0 chr13 6752856 6753018 -95120151 + FRAM SINE Alu 1 162 -14 543 186 73 8 chr13 6753220 6753344 -95119825 - L1MB4 LINE L1 -1 6179 6048 2111 113 26 26 chr13 6753801 6754111 -95119058 + AluSg SINE Alu 1 310 0 332 266 165 13 chr13 6754271 6754429 -95118740 - MIR SINE MIR -79 183 2 256 231 37 74 chr13 6754445 6754553 -95118616 - L1MB4 LINE L1 -2330 5478 5375 1632 162 7 4 chr13 6754576 6754847 -95118322 - AluJb SINE Alu -40 272 1 819 118 8 8 chr13 6754855 6754974 -95118195 - FLAM_C SINE Alu -19 124 6 269 274 94 9 chr13 6757135 6757241 -95115928 - L2 LINE L2 -1 3271 3157 885 234 84 5 chr13 6757483 6757697 -95115472 - L1ME1 LINE L1 -8 6158 5928 23 33 0 0 chr13 6758006 6758036 -95115133 + AT_rich Low_complexity Low_complexity 1 30 0 1239 159 22 137 chr13 6758345 6758756 -95114413 + LTR49 LTR ERV1 1 485 -254 335 174 181 87 chr13 6758779 6758917 -95114252 + LTR48 LTR ERV1 607 757 -30 2230 228 74 54 chr13 6758994 6759640 -95113529 + MER21B LTR ERV1 98 756 -107 1508 91 106 0 chr13 6760071 6760279 -95112890 + MER30 DNA MER1_type 1 230 0 2167 110 0 0 chr13 6761025 6761336 -95111833 - AluSx SINE Alu 0 311 1 929 157 7 0 chr13 6761444 6761591 -95111578 + L1MB4 LINE L1 5333 5480 -694 1368 172 38 48 chr13 6761600 6761891 -95111278 + AluJb SINE Alu 1 288 -24 914 207 0 0 chr13 6761944 6762108 -95111061 + FRAM SINE Alu 8 171 -5 3917 167 34 1 chr13 6762132 6762782 -95110387 + L1MB4 LINE L1 5477 6151 -29 2516 69 0 0 chr13 6762782 6763085 -95110084 + AluY SINE Alu 1 303 -8 3917 167 34 1 chr13 6763085 6763112 -95110057 + L1MB4 LINE L1 6151 6176 -4 861 233 0 0 chr13 6764552 6764715 -95108454 - FRAM SINE Alu -3 163 1 730 192 98 39 chr13 6765769 6765972 -95107197 - MIR SINE MIR -43 219 5 2277 115 0 3 chr13 6766605 6766910 -95106259 - AluSx SINE Alu -7 305 2 195 129 0 0 chr13 6766911 6766942 -95106227 + (T)n Simple_repeat Simple_repeat 1 31 0 248 236 115 54 chr13 6766982 6767130 -95106039 + L1ME4a LINE L1 5964 6120 -1 2035 96 67 3 chr13 6767508 6767790 -95105379 + AluSx SINE Alu 1 300 -12 791 281 19 27 chr13 6768323 6768586 -95104583 - MIR SINE MIR 0 262 2 234 0 0 0 chr13 6769156 6769182 -95103987 + (TA)n Simple_repeat Simple_repeat 2 27 0 1954 163 0 16 chr13 6769285 6769598 -95103571 - AluJo SINE Alu -4 308 1 1945 103 59 7 chr13 6770308 6770623 -95102546 + AluSq SINE Alu 1 313 0 504 221 27 40 chr13 6770940 6771089 -95102080 + MLT1H LTR MaLR 22 168 -381 2262 103 3 0 chr13 6771176 6771476 -95101693 + AluSx SINE Alu 12 312 0 262 184 447 0 chr13 6771527 6771630 -95101539 + HAL1 LINE L1 1290 1438 -1069 792 246 111 47 chr13 6771650 6771663 -95101506 + HAL1 LINE L1 2075 2086 -421 1594 184 16 44 chr13 6771663 6771785 -95101384 + AluJb SINE Alu 1 125 -187 2559 63 0 0 chr13 6771785 6772084 -95101085 - AluY SINE Alu -12 299 1 1594 184 16 44 chr13 6772084 6772281 -95100888 + AluJb SINE Alu 125 311 -1 792 246 111 47 chr13 6772281 6772674 -95100495 + HAL1 LINE L1 2086 2507 0 294 29 0 0 chr13 6773208 6773243 -95099926 + (CA)n Simple_repeat Simple_repeat 2 36 0 397 286 37 37 chr13 6773246 6773407 -95099762 + L1ME4a LINE L1 5941 6101 -20 1394 202 80 3 chr13 6774355 6774642 -95098527 - AluJb SINE Alu -3 309 1 341 252 310 7 chr13 6775038 6775193 -95097976 + L1MCc LINE L1 13 214 -6209 2357 255 108 65 chr13 6775206 6776384 -95096785 + L1MCc LINE L1 303 1531 -4892 1759 259 86 25 chr13 6776400 6777189 -95095980 + L1MCc LINE L1 1751 2587 -4535 9935 101 15 0 chr13 6777191 6779457 -95093712 + L1PA10 LINE L1 3859 6158 -10 316 128 88 49 chr13 6779575 6779677 -95093492 + L1MCc LINE L1 2685 2790 -4332 411 206 57 4 chr13 6779677 6779823 -95093346 + MER3 DNA MER1_type 1 203 -6 1963 151 14 0 chr13 6779864 6780156 -95093013 - AluJb SINE Alu -16 296 1 2156 120 10 16 chr13 6780188 6780496 -95092673 + AluSx SINE Alu 1 306 -6 709 229 47 17 chr13 6780497 6780733 -95092436 + L1MCc LINE L1 2825 3067 -4055 894 206 0 0 chr13 6781115 6781275 -95091894 - FRAM SINE Alu -5 161 2 2355 106 3 0 chr13 6782076 6782379 -95090790 - AluSq SINE Alu -9 304 1 601 177 77 23 chr13 6783154 6783284 -95089885 - FLAM_C SINE Alu -5 138 2 459 273 62 24 chr13 6785507 6785716 -95087453 - MIR SINE MIR -38 224 8 266 210 0 32 chr13 6785719 6785781 -95087388 + tRNA-Gln-CAG tRNA tRNA 5 64 -11 249 322 74 0 chr13 6785798 6785919 -95087250 + MIR SINE MIR 110 239 -23 186 231 93 46 chr13 6786312 6786420 -95086749 + L2 LINE L2 1429 1541 -1773 1549 132 30 117 chr13 6786567 6786900 -95086269 - AluJb SINE Alu -8 304 1 196 241 0 0 chr13 6786991 6787045 -95086124 + MIR SINE MIR 204 257 -5 823 278 304 5 chr13 6787198 6788001 -95085168 + L2 LINE L2 1587 2629 -685 746 264 104 13 chr13 6788073 6788391 -95084778 + LTR16A LTR ERVL 104 450 0 1093 271 59 23 chr13 6788415 6789036 -95084133 + L2 LINE L2 2668 3308 -5 1798 176 0 7 chr13 6789467 6789762 -95083407 - AluJb SINE Alu -19 293 1 762 159 0 23 chr13 6789808 6789940 -95083229 - FLAM_A SINE Alu 0 142 14 194 313 150 7 chr13 6790547 6790694 -95082475 - MIR SINE MIR -74 188 21 1500 172 84 4 chr13 6790873 6791146 -95082023 + AluJo SINE Alu 1 295 -17 1933 156 10 3 chr13 6792114 6792409 -95080760 - AluJo SINE Alu -15 297 1 2413 82 117 107 chr13 6793104 6793855 -95079314 + pTR5 LTR ERV1 13 2435 -3 13629 107 17 79 chr13 6793855 6795086 -95078083 + Tigger1 DNA MER2_type 232 1538 -880 2440 94 3 0 chr13 6795086 6795394 -95077775 + AluSq SINE Alu 1 309 -4 13629 107 17 79 chr13 6795394 6795412 -95077757 + Tigger1 DNA MER2_type 1538 1556 -862 543 194 56 76 chr13 6795412 6795556 -95077613 + FRAM SINE Alu 20 160 -16 13629 107 17 79 chr13 6795556 6796494 -95076675 + Tigger1 DNA MER2_type 1556 2418 0 386 315 40 0 chr13 6796534 6796683 -95076486 - L1ME3A LINE L1 -310 5860 5706 1477 198 3 43 chr13 6796684 6796880 -95076289 - AluJo SINE Alu -2 310 131 2842 20 0 0 chr13 6796880 6797185 -95075984 + AluYb8 SINE Alu 1 305 -13 1477 198 3 43 chr13 6797185 6797311 -95075858 - AluJo SINE Alu -181 131 1 2127 125 0 3 chr13 6797313 6797602 -95075567 - AluSx SINE Alu -24 288 1 328 245 8 12 chr13 6797610 6797728 -95075441 - L1ME3A LINE L1 -803 5343 5245 240 284 25 12 chr13 6797728 6797809 -95075360 + MIR SINE MIR 48 129 -133 1708 155 4 25 chr13 6797869 6798147 -95075022 - AluJo SINE Alu -39 273 2 230 257 64 36 chr13 6798706 6798846 -95074323 - L1ME3A LINE L1 -1081 5065 4922 291 258 120 60 chr13 6798951 6799118 -95074051 - L1ME3A LINE L1 -1421 4725 4549 22 56 0 19 chr13 6799509 6799541 -95073628 + AT_rich Low_complexity Low_complexity 1 33 -20 742 186 0 0 chr13 6799541 6799659 -95073510 - FLAM_C SINE Alu -15 118 1 22 56 0 19 chr13 6799659 6799680 -95073489 + AT_rich Low_complexity Low_complexity 33 53 0 278 297 38 38 chr13 6800040 6800279 -95072890 + L1ME4a LINE L1 5714 5952 -169 2055 115 0 33 chr13 6800345 6800649 -95072520 + AluSx SINE Alu 1 294 -18 2310 92 7 0 chr13 6800655 6800950 -95072219 + AluSc SINE Alu 1 297 -12 206 186 0 0 chr13 6800996 6801039 -95072130 - L2 LINE L2 -248 3065 3023 476 279 114 0 chr13 6801352 6801492 -95071677 - MER63 DNA MER1_type -276 786 5 434 148 70 120 chr13 6801535 6801677 -95071492 + L1ME4a LINE L1 5985 6119 -2 2161 122 0 0 chr13 6802042 6802329 -95070840 - AluSx SINE Alu -25 287 1 3183 177 71 38 chr13 6802335 6803003 -95070166 - L1MB5 LINE L1 0 6174 5480 2399 78 3 3 chr13 6803003 6803311 -95069858 + AluY SINE Alu 1 308 -3 3183 177 71 38 chr13 6803311 6803350 -95069819 - L1MB5 LINE L1 -694 5480 5444 451 216 85 65 chr13 6803500 6803653 -95069516 + MER63A DNA MER1_type 53 208 -2 21 0 0 0 chr13 6804086 6804107 -95069062 + AT_rich Low_complexity Low_complexity 1 21 0 688 185 23 0 chr13 6804616 6804746 -95068423 - FRAM SINE Alu -8 168 36 2217 112 10 3 chr13 6804798 6805094 -95068075 - AluSq SINE Alu -15 298 1 444 300 206 26 chr13 6805400 6805827 -95067342 + MLT1L LTR MaLR 106 609 -6 1690 174 14 3 chr13 6807874 6808168 -95065001 - AluJo SINE Alu -15 297 1 2028 135 22 19 chr13 6808535 6808846 -95064323 - AluSx SINE Alu 0 312 1 2372 99 0 0 chr13 6810418 6810720 -95062449 + AluSg SINE Alu 1 302 -8 192 271 115 42 chr13 6811004 6811100 -95062069 + L2 LINE L2 3150 3252 -20 1889 176 32 26 chr13 6811308 6811688 -95061481 + MLT1B LTR MaLR 1 382 -8 432 168 74 60 chr13 6811976 6812125 -95061044 - L1ME4a LINE L1 -9 6112 5962 612 170 10 0 chr13 6812282 6812382 -95060787 - FLAM_A SINE Alu -22 120 20 791 132 47 23 chr13 6812694 6812823 -95060346 + AluJo SINE Alu 3 134 -178 181 278 56 0 chr13 6813406 6813460 -95059709 + MIR3 SINE MIR 100 156 -52 21 36 0 0 chr13 6813714 6813742 -95059427 + AT_rich Low_complexity Low_complexity 1 28 0 334 294 109 0 chr13 6815740 6815859 -95057310 - L1ME LINE L1 -379 5742 5611 628 188 103 0 chr13 6815888 6816005 -95057164 - FLAM_C SINE Alu -11 132 4 29 0 0 0 chr13 6816006 6816035 -95057134 + AT_rich Low_complexity Low_complexity 1 29 0 256 266 0 0 chr13 6816728 6816792 -95056377 + MIR3 SINE MIR 138 201 -7 1996 106 84 3 chr13 6817980 6818264 -95054905 - AluSg SINE Alu -3 307 1 1976 141 7 3 chr13 6818379 6818669 -95054500 - AluSx SINE Alu -20 292 2 596 133 95 0 chr13 6818679 6818784 -95054385 - AluSg/x SINE Alu -12 297 183 2556 115 4 117 chr13 6818789 6819294 -95053875 - LTR46 LTR ERV1 -11 449 2 977 87 0 8 chr13 6819295 6819422 -95053747 - AluSg/x SINE Alu -103 209 84 3961 126 153 93 chr13 6819718 6821016 -95052153 - pTR5 LTR ERV1 0 2438 738 740 235 161 29 chr13 6822042 6822198 -95050971 - L1ME4a LINE L1 -16 6105 5971 2114 120 7 0 chr13 6822198 6822489 -95050680 - AluSq SINE Alu -20 293 1 740 235 161 29 chr13 6822489 6822778 -95050391 - L1ME4a LINE L1 -150 5971 5601 403 190 21 92 chr13 6822828 6822900 -95050269 + L1MB8 LINE L1 6044 6103 -75 1944 166 10 0 chr13 6822900 6823202 -95049967 + AluJb SINE Alu 1 305 -7 403 190 21 92 chr13 6823202 6823271 -95049898 + L1MB8 LINE L1 6103 6175 -3 446 239 89 111 chr13 6823331 6823375 -95049794 - L1ME4a LINE L1 -81 6040 5997 2250 100 10 3 chr13 6823375 6823675 -95049494 - AluSx SINE Alu -10 302 1 446 239 89 111 chr13 6823675 6823948 -95049221 - L1ME4a LINE L1 -124 5997 5734 2752 20 0 0 chr13 6823948 6824247 -95048922 + AluYa5 SINE Alu 1 299 -12 446 239 89 111 chr13 6824247 6824389 -95048780 - L1ME4a LINE L1 -387 5734 5590 340 67 0 100 chr13 6824403 6824463 -95048706 - L1MB3 LINE L1 -52 6131 6078 1582 156 45 24 chr13 6824474 6824763 -95048406 - AluJb SINE Alu -17 295 1 968 211 12 40 chr13 6827125 6827447 -95045722 + L1M4 LINE L1 972 1284 -5258 * 5151 145 8 4 chr13 6827421 6828240 -95044929 + L1PA16 LINE L1 5833 6655 -9 2246 188 39 79 chr13 6828250 6828357 -95044812 + L1M4 LINE L1 1255 1365 -5281 1910 157 26 7 chr13 6828357 6828663 -95044506 + AluJo SINE Alu 1 312 0 2246 188 39 79 chr13 6828663 6829240 -95043929 + L1M4 LINE L1 1365 1912 -4734 1879 164 7 0 chr13 6829242 6829529 -95043640 + AluJb SINE Alu 1 289 -23 893 168 62 19 chr13 6830091 6830252 -95042917 - AluJo/FRAM SINE Alu -11 301 134 432 234 52 0 chr13 6830255 6830332 -95042837 - AluJ/FLAM SINE Alu -230 82 2 1740 132 4 0 chr13 6830398 6830640 -95042529 + AluSx SINE Alu 1 243 -69 1980 121 7 4 chr13 6830949 6831271 -95041898 + AluSx SINE Alu 1 323 0 714 198 8 0 chr13 6831815 6831936 -95041233 - FLAM_A SINE Alu -7 126 5 354 23 0 0 chr13 6831961 6832004 -95041165 + (TG)n Simple_repeat Simple_repeat 2 44 0 1927 152 3 7 chr13 6832014 6832317 -95040852 - AluSx SINE Alu -10 302 1 599 162 0 81 chr13 6832423 6832559 -95040610 - L1PA10 LINE L1 0 6168 6044 1526 163 22 18 chr13 6832562 6832839 -95040330 - LTR14B LTR ERVK -23 585 308 289 262 50 41 chr13 6835980 6836234 -95036935 + ALR/Alpha Satellite centromeric 1 256 0 2546 68 0 0 chr13 6836435 6836745 -95036424 + AluY SINE Alu 1 310 -1 28 0 0 47 chr13 6838725 6838752 -95034417 + AT_rich Low_complexity Low_complexity 1 27 -14 2242 100 0 3 chr13 6838752 6839041 -95034128 - AluY SINE Alu -23 288 1 28 0 0 47 chr13 6839041 6839056 -95034113 + AT_rich Low_complexity Low_complexity 27 41 0 2697 17 0 0 chr13 6841863 6842156 -95031013 - AluYa5 SINE Alu -18 293 1 3105 180 50 41 chr13 6842158 6842864 -95030305 + LTR8A LTR ERV1 16 727 0 486 308 35 0 chr13 6843730 6843902 -95029267 + L1PA16 LINE L1 2467 2644 -3502 * 941 165 88 0 chr13 6843901 6844083 -95029086 - L1PA15-16 LINE L1 -3932 2917 2720 10680 205 24 8 chr13 6844084 6847533 -95025636 + L1PA16 LINE L1 2658 6165 -1 258 32 0 0 chr13 6847570 6847601 -95025568 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 1575 259 25 0 chr13 6847623 6848029 -95025140 - L1M4 LINE L1 -940 5206 4791 257 132 0 38 chr13 6848613 6848666 -95024503 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 360 0 0 0 chr13 6848729 6848769 -95024400 + (TG)n Simple_repeat Simple_repeat 1 40 0 408 248 31 47 chr13 6849214 6849343 -95023826 + MLT1D LTR MaLR 343 469 -36 21 0 0 0 chr13 6849758 6849779 -95023390 + AT_rich Low_complexity Low_complexity 1 21 0 258 227 108 70 chr13 6849893 6850179 -95022990 - L1M4 LINE L1 -2866 3280 2984 1372 209 100 6 chr13 6850235 6850555 -95022614 + MLT1D LTR MaLR 156 505 0 218 207 244 0 chr13 6851246 6851328 -95021841 - MIR SINE MIR -71 137 36 396 0 0 0 chr13 6852272 6852316 -95020853 + (TG)n Simple_repeat Simple_repeat 2 45 0 253 290 139 23 chr13 6852948 6853096 -95020073 + MIR SINE MIR 5 142 -66 188 175 25 0 chr13 6853941 6853981 -95019188 + MIR SINE MIR 105 145 -63 1066 96 12 0 chr13 6856334 6856500 -95016669 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 3481 66 26 18 chr13 6856500 6856956 -95016213 - L1PA7 LINE L1 -13 6141 5682 227 351 115 20 chr13 6857665 6858013 -95015156 + L1ME LINE L1 5504 5884 -237 26 0 0 0 chr13 6858417 6858443 -95014726 + AT_rich Low_complexity Low_complexity 1 26 0 603 234 28 0 chr13 6858821 6858966 -95014203 - L1PA16 LINE L1 0 6166 6018 4133 154 16 25 chr13 6859198 6859390 -95013779 - L1MA3 LINE L1 0 6305 6113 189 0 0 0 chr13 6859390 6859411 -95013758 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2326 59 0 3 chr13 6859411 6859697 -95013472 - AluY SINE Alu -26 285 1 4133 154 16 25 chr13 6859697 6860267 -95012902 - L1MA3 LINE L1 -190 6115 5549 198 0 0 0 chr13 6861203 6861225 -95011944 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 767 188 0 0 chr13 6861989 6862106 -95011063 + FLAM_A SINE Alu 1 117 -16 43801 47 7 2 chr13 6862107 6867702 -95005467 - L1PA4 LINE L1 0 6155 590 180 0 0 0 chr13 6867702 6867722 -95005447 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 43801 47 7 2 chr13 6867722 6868241 -95004928 - L1PA4 LINE L1 -5565 590 8 8956 51 5 0 chr13 6868241 6869243 -95003926 - LTR13 LTR ERVK 0 1007 1 382 348 18 0 chr13 6870877 6870989 -95002180 - L2 LINE L2 -259 3054 2941 195 167 48 24 chr13 6872762 6872804 -95000365 + MER5A DNA MER1_type 43 85 -104 * 361 211 156 0 chr13 6872788 6872878 -95000291 - MER5A DNA MER1_type -77 112 9 5186 109 142 131 chr13 6873409 6874955 -94998214 - pTR5 LTR ERV1 0 2438 741 297 0 0 0 chr13 6876619 6876652 -94996517 + (TG)n Simple_repeat Simple_repeat 1 33 0 479 188 21 0 chr13 6877151 6877247 -94995922 - Charlie1 DNA MER1_type -45 2716 2619 986 201 25 0 chr13 6878713 6878917 -94994252 + AluJb SINE Alu 97 305 -7 1125 94 0 0 chr13 6879254 6879392 -94993777 + AluSq/x SINE Alu 1 138 -175 266 187 0 10 chr13 6879420 6879479 -94993690 - Alu SINE Alu -13 289 248 1620 184 24 3 chr13 6880943 6881237 -94991932 - AluJb SINE Alu -12 300 1 23 0 0 0 chr13 6881674 6881697 -94991472 + AT_rich Low_complexity Low_complexity 1 23 0 2075 65 11 8 chr13 6884801 6885061 -94988108 - AluSg1 SINE Alu -14 295 35 22 0 0 0 chr13 6885071 6885093 -94988076 + AT_rich Low_complexity Low_complexity 1 22 0 1094 88 0 0 chr13 6885093 6885240 -94987929 - AluY SINE Alu -8 303 157 588 306 95 6 chr13 6885277 6885636 -94987533 + L1M4 LINE L1 4549 4939 -1207 453 221 0 23 chr13 6885636 6885722 -94987447 + MER21B LTR ERV1 1 84 -779 207 0 0 0 chr13 6885914 6885937 -94987232 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2054 111 0 10 chr13 6885937 6886226 -94986943 - AluSx SINE Alu -26 286 1 948 185 83 0 chr13 6886454 6886659 -94986510 - MER99 DNA DNA -271 557 336 2159 103 0 30 chr13 6886660 6886961 -94986208 - AluSq SINE Alu -21 292 1 1116 130 36 36 chr13 6887276 6887468 -94985701 - AluJb SINE Alu -120 192 1 401 185 193 8 chr13 6887468 6887587 -94985582 - L1MB8 LINE L1 -269 5909 5769 5353 118 48 62 chr13 6887598 6888085 -94985084 - L1MA4A LINE L1 -1 6302 5810 180 0 0 0 chr13 6888085 6888105 -94985064 + (TA)n Simple_repeat Simple_repeat 2 21 0 5353 118 48 62 chr13 6888105 6888155 -94985014 - L1MA4A LINE L1 -493 5810 5761 2247 100 0 31 chr13 6888155 6888474 -94984695 - AluSg1 SINE Alu 0 309 1 5353 118 48 62 chr13 6888474 6888926 -94984243 - L1MA4A LINE L1 -542 5761 5304 230 56 28 0 chr13 6888926 6888962 -94984207 + (TATG)n Simple_repeat Simple_repeat 4 40 0 2043 119 11 3 chr13 6888962 6889247 -94983922 - AluSq SINE Alu -26 287 1 5387 146 36 4 chr13 6889247 6890338 -94982831 - L1 LINE L1 -3764 3084 1956 2041 151 3 0 chr13 6890338 6890642 -94982527 - AluSx SINE Alu -7 305 1 5387 146 36 4 chr13 6890642 6890667 -94982502 - L1 LINE L1 -4892 1956 1933 5902 107 20 31 chr13 6890911 6891827 -94981342 - L1PA15 LINE L1 -6 6159 5254 1382 115 0 21 chr13 6891839 6892031 -94981138 - AluSg SINE Alu -94 216 29 10271 150 22 17 chr13 6892031 6892506 -94980663 - L1PA15-16 LINE L1 -3489 3360 2889 561 30 0 0 chr13 6892506 6892573 -94980596 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 1867 157 4 0 chr13 6892573 6892847 -94980322 - AluSc SINE Alu -34 275 1 10271 150 22 17 chr13 6892847 6894415 -94978754 - L1PA15-16 LINE L1 -3959 2890 1305 2519 157 15 0 chr13 6894421 6894823 -94978346 - L1PA15-16 LINE L1 -6437 412 5 238 291 118 52 chr13 6894821 6895151 -94978018 - L1M4 LINE L1 -2316 3830 3479 * 654 156 0 0 chr13 6895162 6895258 -94977911 + AluSg/x SINE Alu 201 296 -13 622 194 119 12 chr13 6895605 6895765 -94977404 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 6896290 6896413 -94976756 - MER112 DNA MER1_type 0 260 139 530 245 24 53 chr13 6896497 6896709 -94976460 + MIR3 SINE MIR 13 208 0 1950 125 0 11 chr13 6896768 6897047 -94976122 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr13 6897054 6897077 -94976092 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 369 0 0 0 chr13 6897701 6897742 -94975427 + (TG)n Simple_repeat Simple_repeat 2 42 0 222 282 103 0 chr13 6897817 6897895 -94975274 - MIR SINE MIR -29 233 148 807 206 52 134 chr13 6897925 6898479 -94974690 - L1MC5 LINE L1 -48 7913 7405 424 221 107 25 chr13 6898479 6898601 -94974568 - MIR SINE MIR -42 220 89 216 0 0 0 chr13 6898879 6898903 -94974266 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr13 6899947 6899972 -94973197 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2012 123 0 0 chr13 6899975 6900252 -94972917 - AluSx SINE Alu -25 287 11 204 362 79 0 chr13 6902013 6902140 -94971029 + L3b LINE CR1 1125 1261 -322 2096 134 26 10 chr13 6902341 6902648 -94970521 - AluSx SINE Alu 0 312 1 621 310 16 5 chr13 6903393 6903580 -94969589 - MER5A DNA MER1_type 0 189 1 258 243 153 9 chr13 6904340 6904451 -94968718 + MIR SINE MIR 81 207 -55 707 163 16 16 chr13 6904772 6904895 -94968274 - AluJ SINE Alu 0 312 190 273 140 0 0 chr13 6904899 6904949 -94968220 - AluJ SINE Alu -169 133 84 869 201 106 15 chr13 6904949 6905054 -94968115 - AluSp SINE Alu -95 218 124 1517 114 5 9 chr13 6905054 6905273 -94967896 - AluSc SINE Alu -5 304 87 5666 123 54 21 chr13 6905275 6906213 -94966956 + LTR5 LTR ERVK 1 969 0 869 201 106 15 chr13 6906213 6906303 -94966866 - AluSp SINE Alu -189 124 2 2325 107 0 0 chr13 6907088 6907387 -94965782 + AluSc SINE Alu 1 299 -10 1572 190 17 3 chr13 6907439 6907728 -94965441 + AluSx SINE Alu 1 293 -19 353 45 0 0 chr13 6907745 6907789 -94965380 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 231 39 13 chr13 6908279 6908357 -94964812 + A-rich Low_complexity Low_complexity 4 83 0 946 107 0 0 chr13 6908427 6908548 -94964621 - FRAM SINE Alu -28 148 28 3106 181 51 7 chr13 6908548 6909140 -94964029 + MER54A LTR ERVL 284 901 0 907 58 117 0 chr13 6910597 6910717 -94962452 - MER85 DNA T2_type -2 137 4 208 206 32 0 chr13 6911293 6911356 -94961813 + (TA)n Simple_repeat Simple_repeat 1 65 0 1683 193 3 10 chr13 6912085 6912396 -94960773 - AluJb SINE Alu -3 309 1 14267 230 40 30 chr13 6913546 6914581 -94958588 - L1PA16 LINE L1 -9 7595 6572 2444 68 3 0 chr13 6914581 6914877 -94958292 + AluY SINE Alu 3 299 -12 14267 230 40 30 chr13 6914877 6916358 -94956811 - L1PA16 LINE L1 -1032 6572 5107 2223 105 0 20 chr13 6916358 6916664 -94956505 - AluY SINE Alu -11 300 1 14267 230 40 30 chr13 6916664 6917896 -94955273 - L1PA16 LINE L1 -2497 5107 3889 2233 97 0 3 chr13 6917896 6918184 -94954985 + AluY SINE Alu 3 289 -22 14267 230 40 30 chr13 6918184 6921360 -94951809 - L1PA16 LINE L1 -3715 3889 8 2232 94 0 16 chr13 6921536 6921844 -94951325 + AluY SINE Alu 3 305 -6 718 137 0 10 chr13 6922031 6922133 -94951036 - AluS SINE Alu -211 102 2 2431 94 0 0 chr13 6922293 6922601 -94950568 - AluSg SINE Alu -2 308 1 378 221 0 0 chr13 6925128 6925223 -94947946 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 494 308 43 84 chr13 6925236 6925606 -94947563 + L2 LINE L2 2917 3271 -1 180 0 0 0 chr13 6929383 6929403 -94943766 + (A)n Simple_repeat Simple_repeat 1 20 0 195 180 213 0 chr13 6930179 6930240 -94942929 - MER5A DNA MER1_type -106 83 10 256 289 55 47 chr13 6930359 6930487 -94942682 - L2 LINE L2 -941 2373 2245 2169 110 0 0 chr13 6930656 6930946 -94942223 + AluSx SINE Alu 21 310 -2 295 311 57 0 chr13 6932193 6932318 -94940851 + MIR SINE MIR 20 150 -63 206 116 47 23 chr13 6933074 6933095 -94940074 + (TTCTG)n Simple_repeat Simple_repeat 2 21 -24 1416 172 15 78 chr13 6933095 6933427 -94939742 - AluJo SINE Alu -1 311 1 206 116 47 23 chr13 6933427 6933448 -94939721 + (TTCTG)n Simple_repeat Simple_repeat 21 45 0 1387 96 0 5 chr13 6933735 6933923 -94939246 - AluY SINE Alu -124 187 1 2239 148 5 8 chr13 6933923 6934301 -94938868 - L1MA4 LINE L1 -246 6054 5678 620 184 15 22 chr13 6934354 6934490 -94938679 + Ricksha DNA DNA 1 135 -1119 2207 177 33 5 chr13 6934542 6934909 -94938260 + Ricksha DNA DNA 308 684 -2562 259 258 103 21 chr13 6934836 6934933 -94938236 + MLT2D LTR ERVL 321 425 -128 * 2096 138 41 141 chr13 6934932 6935194 -94937975 + Ricksha DNA DNA 2641 2928 -323 2032 113 10 3 chr13 6935194 6935495 -94937674 - AluSq SINE Alu -10 303 1 2096 138 41 141 chr13 6935495 6935578 -94937591 + Ricksha DNA DNA 2928 3018 -233 2315 66 0 3 chr13 6935578 6935880 -94937289 - AluY SINE Alu -10 301 1 2096 138 41 141 chr13 6935880 6936071 -94937098 + Ricksha DNA DNA 3018 3124 -127 4153 128 105 54 chr13 6936101 6936883 -94936286 - LTR12 LTR ERV1 0 826 5 1609 208 16 43 chr13 6936916 6937354 -94935815 + pTR5 LTR ERV1 802 1227 -1211 4797 111 25 98 chr13 6937382 6938269 -94934900 + LTR12 LTR ERV1 5 826 0 384 220 189 8 chr13 6938937 6939069 -94934100 + L2 LINE L2 3115 3270 -43 1453 148 38 6 chr13 6939074 6939510 -94933659 + LTR54 LTR ERV1 1 510 0 243 173 0 0 chr13 6939541 6939593 -94933576 + GA-rich Low_complexity Low_complexity 2 53 0 407 320 47 6 chr13 6939697 6939868 -94933301 + MIR SINE MIR 16 193 -63 360 353 59 13 chr13 6940508 6940746 -94932423 + MIR SINE MIR 6 254 -8 476 251 134 27 chr13 6941849 6942072 -94931097 + MLT1J1 LTR MaLR 189 435 -11 1338 188 112 65 chr13 6942198 6942628 -94930541 + LTR7 LTR ERV1 1 450 0 2252 99 0 3 chr13 6942753 6943067 -94930102 - AluSq SINE Alu 0 313 1 293 283 41 69 chr13 6943873 6944018 -94929151 - MIR3 SINE MIR -28 180 40 237 266 31 16 chr13 6944123 6944187 -94928982 + MIR SINE MIR 89 153 -109 3937 113 4 11 chr13 6944821 6945148 -94928021 + MER41A LTR ERV1 1 324 -230 2182 107 0 0 chr13 6945148 6945446 -94927723 + AluSg SINE Alu 1 298 -12 3937 113 4 11 chr13 6945446 6945676 -94927493 + MER41A LTR ERV1 324 554 0 548 254 55 55 chr13 6945755 6945956 -94927213 + MIR SINE MIR 48 248 -14 297 252 179 0 chr13 6946119 6946242 -94926927 - MIR SINE MIR -71 191 47 685 272 44 44 chr13 6946420 6946670 -94926499 - MIR SINE MIR -12 250 1 420 227 144 57 chr13 6946908 6947102 -94926067 + L1MEd LINE L1 3 213 -5906 243 265 108 12 chr13 6947273 6947356 -94925813 + L1MEd LINE L1 464 554 -5565 801 183 0 21 chr13 6947358 6947500 -94925669 - FLAM_C SINE Alu -3 140 2 366 266 9 0 chr13 6947589 6947698 -94925471 + L1MEd LINE L1 671 780 -5339 336 265 204 6 chr13 6947732 6947894 -94925275 + L1MEd LINE L1 1064 1257 -4862 2313 71 0 37 chr13 6947913 6948236 -94924933 - AluY SINE Alu 0 311 1 1892 135 30 0 chr13 6948401 6948697 -94924472 + AluSq SINE Alu 9 313 0 780 149 0 0 chr13 6948728 6948849 -94924320 + FLAM_C SINE Alu 10 130 -13 1778 173 0 3 chr13 6949530 6949836 -94923333 - AluJb SINE Alu -7 305 1 805 127 16 0 chr13 6949935 6950061 -94923108 - FLAM_C SINE Alu -4 139 12 2072 34 52 4 chr13 6951004 6951317 -94921852 + AluY SINE Alu 1 326 0 1532 98 9 0 chr13 6952307 6952521 -94920648 - MER4E LTR ERV1 0 766 551 313 44 0 22 chr13 6952516 6952561 -94920608 - MER4E LTR ERV1 -735 44 1 * 1548 191 65 9 chr13 6953145 6953470 -94919699 - MER61A LTR ERV1 0 343 1 2443 61 3 13 chr13 6953560 6953873 -94919296 + AluY SINE Alu 1 310 -1 1900 108 14 21 chr13 6954001 6954287 -94918882 - MER61A-int LTR ERV1 -108 6650 6367 8673 126 55 38 chr13 6954387 6954566 -94918603 - MER61A-int LTR ERV1 -761 5997 5823 2088 122 3 0 chr13 6954566 6954862 -94918307 + AluSx SINE Alu 1 297 -15 8673 126 55 38 chr13 6954862 6956201 -94916968 - MER61A-int LTR ERV1 -935 5823 4452 3639 128 44 9 chr13 6956203 6956766 -94916403 - MER61A-int LTR ERV1 -2673 4085 3503 4133 117 73 22 chr13 6956803 6957608 -94915561 - MER61A-int LTR ERV1 -3666 3092 2247 3920 95 4 2 chr13 6957608 6958126 -94915043 + MER41A LTR ERV1 1 519 -35 1585 146 0 24 chr13 6958126 6958380 -94914789 - AluJb SINE Alu -58 254 7 403 224 0 12 chr13 6958387 6958472 -94914697 - L1ME2 LINE L1 -62 6102 6019 565 158 20 20 chr13 6958580 6958732 -94914437 - L1M4 LINE L1 -3183 2963 2812 309 275 180 35 chr13 6958836 6959203 -94913966 - L1M4 LINE L1 -2002 4144 3725 1764 131 6 70 chr13 6959354 6959667 -94913502 - AluJb SINE Alu -18 294 2 6929 65 33 0 chr13 6959711 6960579 -94912590 + MER11D LTR ERVK 1 897 0 509 309 16 3 chr13 6961154 6961346 -94911823 - L1MC4a LINE L1 -332 5910 5713 243 0 0 0 chr13 6961892 6961919 -94911250 + (ATG)n Simple_repeat Simple_repeat 1 27 0 2119 98 16 10 chr13 6962148 6962453 -94910716 + AluSx SINE Alu 1 307 -5 234 210 12 25 chr13 6963263 6963344 -94909825 + CT-rich Low_complexity Low_complexity 1 80 0 294 208 73 10 chr13 6963609 6963705 -94909464 - L1ME4a LINE L1 0 6121 6020 524 265 57 29 chr13 6963778 6964023 -94909146 + MLT1J1 LTR MaLR 45 296 -150 2070 124 3 13 chr13 6964097 6964411 -94908758 + AluSx SINE Alu 1 311 -1 800 163 0 0 chr13 6966649 6966772 -94906397 - FLAM_C SINE Alu -8 125 3 1324 168 71 4 chr13 6967484 6967752 -94905417 + AluJo SINE Alu 19 304 -8 625 281 46 12 chr13 6967775 6968103 -94905066 + L1M4 LINE L1 2211 2549 -3597 2495 203 22 42 chr13 6968191 6968782 -94904387 + MER119 DNA MER1_type 5 583 0 641 119 8 42 chr13 6968831 6968949 -94904220 + FLAM_C SINE Alu 30 143 0 1045 139 11 37 chr13 6968963 6969150 -94904019 + AluJb SINE Alu 127 308 -4 400 243 64 125 chr13 6969155 6969207 -94903962 + L1M4 LINE L1 2678 2732 -3414 2320 63 37 0 chr13 6969207 6969507 -94903662 + AluY SINE Alu 1 311 0 400 243 64 125 chr13 6969507 6969750 -94903419 + L1M4 LINE L1 2732 2955 -3191 2217 141 60 0 chr13 6969752 6970134 -94903035 - L1PA16 LINE L1 0 6166 5762 314 109 0 0 chr13 6970144 6970190 -94902979 + L1P4 LINE L1 5755 5800 -366 423 245 78 91 chr13 6970201 6970470 -94902699 + L1M4 LINE L1 2945 3205 -2941 1890 155 0 0 chr13 6970470 6970780 -94902389 + AluSx SINE Alu 1 310 -2 423 245 78 91 chr13 6970780 6971024 -94902145 + L1M4 LINE L1 3205 3451 -2695 3508 179 42 23 chr13 6971074 6971810 -94901359 + L1MC3 LINE L1 7015 7764 -21 23 54 0 0 chr13 6971917 6971954 -94901215 + AT_rich Low_complexity Low_complexity 1 37 0 1833 152 0 3 chr13 6971964 6972261 -94900908 + AluJb SINE Alu 1 296 -16 2178 78 0 3 chr13 6972263 6972611 -94900558 + AluY SINE Alu 1 347 0 724 285 81 4 chr13 6972611 6972871 -94900298 + L1M4 LINE L1 3950 4229 -1917 22 35 0 0 chr13 6973745 6973774 -94899395 + AT_rich Low_complexity Low_complexity 1 29 0 2862 152 30 4 chr13 6974090 6974591 -94898578 - L1MA4 LINE L1 -11 6289 5776 308 234 16 0 chr13 6974622 6974686 -94898483 - L1MC4 LINE L1 -1339 6703 6639 2517 30 0 7 chr13 6974689 6974991 -94898178 - AluY SINE Alu -11 300 1 3270 125 29 5 chr13 6974991 6975629 -94897540 - L1M2 LINE L1 -514 5786 5127 342 297 25 34 chr13 6976254 6976372 -94896797 + MIR SINE MIR 24 140 -68 1061 257 86 24 chr13 6976387 6976761 -94896408 - MLT2C1 LTR ERVL 0 397 1 401 327 47 45 chr13 6976911 6977336 -94895833 - L1ME4a LINE L1 -173 5948 5523 875 172 105 62 chr13 6977467 6977594 -94895575 + Tigger3(Golem) DNA MER2_type 1 142 -2887 2424 54 3 0 chr13 6977594 6977890 -94895279 + AluY SINE Alu 2 298 -13 875 172 105 62 chr13 6977890 6977971 -94895198 + Tigger3(Golem) DNA MER2_type 142 218 -2811 * 3747 135 66 2 chr13 6977946 6978086 -94895083 + Tigger3(Golem) DNA MER2_type 2354 2484 -545 575 242 0 8 chr13 6978086 6978210 -94894959 + FLAM_A SINE Alu 1 123 -10 3747 135 66 2 chr13 6978210 6978704 -94894465 + Tigger3(Golem) DNA MER2_type 2484 3029 0 1685 127 4 12 chr13 6978886 6979145 -94894024 - Tigger2 DNA MER2_type 0 2718 2462 4131 142 53 30 chr13 6979182 6979485 -94893684 - Tigger2 DNA MER2_type -1946 772 477 2373 51 3 0 chr13 6979485 6979777 -94893392 - AluY SINE Alu -18 293 1 4131 142 53 30 chr13 6979777 6980228 -94892941 - Tigger2 DNA MER2_type -2241 477 1 1651 180 81 33 chr13 6981423 6981818 -94891351 - MLT2D LTR ERVL 0 414 1 2325 107 0 0 chr13 6983019 6983317 -94889852 + AluSg SINE Alu 1 298 -12 286 324 142 7 chr13 6983898 6984046 -94889123 - MER5A DNA MER1_type -4 185 18 231 304 26 61 chr13 6984287 6984402 -94888767 + L3b LINE CR1 1327 1437 -146 252 228 0 0 chr13 6985359 6985416 -94887753 + MER53 DNA DNA 1 57 -132 662 141 141 0 chr13 6985416 6985537 -94887632 + FRAM SINE Alu 23 160 -16 294 206 0 14 chr13 6985538 6985611 -94887558 - MER53 DNA DNA -37 152 81 2301 94 3 16 chr13 6986966 6987274 -94885895 + AluSq SINE Alu 2 305 -8 2404 78 0 0 chr13 6988498 6988791 -94884378 - AluSc SINE Alu -14 295 3 866 238 17 74 chr13 6988960 6989259 -94883910 + L1MA9 LINE L1 5987 6268 -44 1604 148 72 14 chr13 6990955 6991232 -94881937 + AluJb SINE Alu 5 297 -15 200 193 70 35 chr13 6991642 6991699 -94881470 + L3 LINE CR1 1519 1577 0 2550 54 0 19 chr13 6992174 6992491 -94880678 - AluY SINE Alu 0 311 1 513 188 10 0 chr13 6993110 6993211 -94879958 - MLT1G LTR MaLR 0 590 489 873 57 63 10 chr13 6995296 6995634 -94877535 + (TG)n Simple_repeat Simple_repeat 1 537 0 702 58 64 23 chr13 6995661 6995833 -94877336 + (TG)n Simple_repeat Simple_repeat 2 180 0 183 263 153 58 chr13 6996136 6996273 -94876896 + MIR3 SINE MIR 24 173 -35 2430 81 0 3 chr13 6996376 6996674 -94876495 - AluSq SINE Alu -16 297 1 341 235 160 34 chr13 6996889 6997008 -94876161 - MER63 DNA MER1_type -302 760 1 208 273 64 27 chr13 6997098 6997208 -94875961 + MIR SINE MIR 120 233 -29 288 165 29 5 chr13 6998018 6998127 -94875042 + MER20 DNA MER1_type 55 219 0 2386 96 0 3 chr13 6999573 6999874 -94873295 + AluSp SINE Alu 1 300 -13 2518 65 3 0 chr13 6999875 7000210 -94872959 + AluY SINE Alu 1 336 0 2193 102 3 14 chr13 7000595 7000890 -94872279 + AluSx SINE Alu 1 292 -20 565 262 83 35 chr13 7001324 7001553 -94871616 + MIR SINE MIR 7 246 -16 634 314 31 14 chr13 7002270 7002563 -94870606 + L1MB7 LINE L1 5863 6160 -24 218 103 0 26 chr13 7006732 7006771 -94866398 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 233 373 105 19 chr13 7006936 7007250 -94865919 + L2 LINE L2 2222 2562 -752 246 32 0 0 chr13 7008267 7008298 -94864871 + (CA)n Simple_repeat Simple_repeat 1 31 0 2282 110 3 7 chr13 7009005 7009313 -94863856 - AluSq SINE Alu -6 307 1 189 279 49 0 chr13 7009545 7009606 -94863563 - MIR SINE MIR -43 219 156 2966 3 0 19 chr13 7009829 7010151 -94863018 + AluYb8 SINE Alu 1 316 -2 926 213 30 53 chr13 7010461 7010724 -94862445 + MIR SINE MIR 5 261 -1 2117 137 0 19 chr13 7010756 7011063 -94862106 + AluJo SINE Alu 1 301 -11 180 254 0 34 chr13 7011372 7011431 -94861738 + MIR SINE MIR 206 262 0 246 160 40 0 chr13 7011446 7011496 -94861673 - L1ME LINE L1 -452 5669 5618 280 279 27 82 chr13 7013657 7013804 -94859365 + L2 LINE L2 2925 3063 -209 2449 95 0 9 chr13 7014620 7014936 -94858233 + AluSq SINE Alu 1 313 0 199 208 19 19 chr13 7015615 7015668 -94857501 - L2 LINE L2 0 3313 3261 349 282 70 14 chr13 7016062 7016204 -94856965 - L2 LINE L2 0 3313 3164 2090 112 7 0 chr13 7016639 7016943 -94856226 - AluSx SINE Alu 0 308 3 706 65 56 28 chr13 7016961 7017069 -94856100 - HY1 scRNA scRNA -1 111 1 1088 156 13 69 chr13 7017069 7017292 -94855877 - AluJo SINE Alu -16 296 85 519 126 58 0 chr13 7017296 7017383 -94855786 - FRAM SINE Alu -59 117 26 1922 135 20 24 chr13 7017404 7017700 -94855469 - AluSx SINE Alu -17 295 1 219 36 0 0 chr13 7018397 7018425 -94854744 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 211 318 15 0 chr13 7018782 7018848 -94854321 - L2 LINE L2 -527 2787 2721 2117 134 3 13 chr13 7019068 7019375 -94853794 - AluJb SINE Alu -8 304 1 295 313 0 0 chr13 7020949 7021029 -94852140 - MER5A DNA MER1_type -100 89 10 1716 141 111 4 chr13 7021088 7021350 -94851819 - AluSx SINE Alu -19 293 4 227 35 0 0 chr13 7021968 7021997 -94851172 + MER5A DNA MER1_type 41 69 -120 614 200 21 14 chr13 7022001 7022141 -94851028 + FLAM_A SINE Alu 2 142 0 1057 118 11 6 chr13 7022206 7022384 -94850785 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 409 218 11 0 chr13 7022386 7022473 -94850696 + MER5A DNA MER1_type 64 151 -38 451 269 69 40 chr13 7022494 7022669 -94850500 - MER97b DNA MER1_type? -859 194 15 856 158 0 0 chr13 7023525 7023652 -94849517 + FLAM_C SINE Alu 1 127 -16 309 282 77 46 chr13 7027157 7027352 -94845817 - L1ME4a LINE L1 -2 6119 5919 333 254 91 27 chr13 7027540 7027650 -94845519 - L1ME4a LINE L1 -474 5647 5531 2245 120 0 0 chr13 7027928 7028227 -94844942 - AluSx SINE Alu -13 299 1 918 129 0 0 chr13 7028451 7028575 -94844594 + FLAM_C SINE Alu 1 124 -19 227 337 36 0 chr13 7028584 7028667 -94844502 - L2 LINE L2 -561 2753 2668 2357 89 7 0 chr13 7029038 7029341 -94843828 + AluY SINE Alu 1 305 -6 181 353 173 0 chr13 7029350 7029489 -94843680 - MIR SINE MIR -3 259 97 861 232 150 15 chr13 7029550 7029890 -94843279 + LTR37A LTR ERV1 3 388 -38 180 125 0 0 chr13 7030324 7030356 -94842813 + (T)n Simple_repeat Simple_repeat 1 32 0 1869 136 48 42 chr13 7030429 7030739 -94842430 - AluJb SINE Alu 0 312 1 1518 187 63 20 chr13 7031312 7031659 -94841510 + L1PA16 LINE L1 5803 6164 -2 223 191 152 38 chr13 7032554 7032659 -94840510 + L2 LINE L2 3150 3266 -6 1738 174 3 3 chr13 7032755 7033059 -94840110 + AluJo SINE Alu 3 306 -6 201 74 0 0 chr13 7033061 7033088 -94840081 + (GGA)n Simple_repeat Simple_repeat 3 29 0 583 48 24 0 chr13 7033088 7033171 -94839998 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 216 297 0 0 chr13 7033504 7033568 -94839601 + L2 LINE L2 1912 1975 -1339 181 191 149 0 chr13 7033640 7033687 -94839482 - L3 LINE CR1 -931 646 593 644 250 48 18 chr13 7033735 7033963 -94839206 - MER90 LTR ERV1 0 575 341 1132 153 222 106 chr13 7034350 7034514 -94838655 - LTR52 LTR ERVL -5 416 273 2219 76 0 10 chr13 7034514 7034804 -94838365 + AluY SINE Alu 1 287 -24 1132 153 222 106 chr13 7034804 7034999 -94838170 - LTR52 LTR ERVL -148 273 15 1861 155 0 7 chr13 7034999 7035302 -94837867 + AluSx SINE Alu 1 301 -11 467 211 0 11 chr13 7035451 7035541 -94837628 - MIR SINE MIR -22 240 152 1841 129 31 28 chr13 7035552 7035610 -94837559 - MER2 DNA MER2_type -25 320 264 1964 123 10 0 chr13 7035610 7035903 -94837266 + AluSx SINE Alu 1 296 -16 1841 129 31 28 chr13 7035903 7036162 -94837007 - MER2 DNA MER2_type -81 264 2 550 303 26 33 chr13 7036163 7036315 -94836854 - MIR SINE MIR -111 151 1 261 278 157 28 chr13 7036986 7037094 -94836075 - MIR3 SINE MIR -36 172 66 528 151 21 11 chr13 7037288 7037381 -94835788 - MIR SINE MIR -98 164 71 1260 150 58 23 chr13 7037516 7037776 -94835393 - LTR54 LTR ERV1 0 510 242 1778 144 7 3 chr13 7037792 7038091 -94835078 - AluSq SINE Alu -13 300 1 204 318 64 18 chr13 7038949 7039059 -94834110 - MER5A DNA MER1_type -67 122 8 658 157 0 0 chr13 7039363 7039478 -94833691 - FLAM_A SINE Alu 0 142 28 1718 113 16 12 chr13 7040012 7040269 -94832900 + AluSc SINE Alu 51 308 -1 251 276 61 31 chr13 7040686 7040784 -94832385 + MLT1G1 LTR MaLR 1 101 -494 2308 149 66 76 chr13 7041007 7041247 -94831922 + LTR54 LTR ERV1 1 242 -268 2215 93 3 3 chr13 7041247 7041548 -94831621 + AluSx SINE Alu 1 301 -11 2308 149 66 76 chr13 7041548 7041822 -94831347 + LTR54 LTR ERV1 242 510 0 528 151 21 11 chr13 7041957 7042050 -94831119 + MIR SINE MIR 71 164 -98 40 0 0 0 chr13 7042392 7042432 -94830737 + AT_rich Low_complexity Low_complexity 1 40 0 409 131 48 7 chr13 7042446 7042591 -94830578 + (TA)n Simple_repeat Simple_repeat 1 151 0 2431 51 0 0 chr13 7043339 7043633 -94829536 + AluY SINE Alu 1 294 -17 198 233 0 0 chr13 7043633 7043676 -94829493 - MIR SINE MIR -151 111 69 196 130 43 0 chr13 7049625 7049671 -94823498 + CT-rich Low_complexity Low_complexity 2 49 0 1873 110 3 28 chr13 7052064 7052378 -94820791 - AluSq SINE Alu 0 309 3 2428 62 0 3 chr13 7052515 7052821 -94820348 + AluY SINE Alu 1 305 -6 314 190 36 51 chr13 7053297 7053490 -94819679 + L1ME2 LINE L1 5312 5495 -685 865 240 61 51 chr13 7053557 7053869 -94819300 + L1MEd LINE L1 401 715 -5404 * 891 247 29 14 chr13 7053862 7054137 -94819032 + L1MEd LINE L1 979 1257 -4862 271 294 56 53 chr13 7054182 7054502 -94818667 + L1MEd LINE L1 1336 1656 -4473 264 344 176 0 chr13 7054644 7054769 -94818400 - L2 LINE L2 -299 2973 2827 1548 117 46 4 chr13 7054769 7055008 -94818161 + L1PA13 LINE L1 5321 5569 -596 4969 56 13 20 chr13 7055008 7056040 -94817129 - MER11A LTR ERVK 0 1266 6 3921 84 59 3 chr13 7056040 7056612 -94816557 + L1PA13 LINE L1 5560 6163 0 950 241 87 78 chr13 7056612 7056901 -94816268 + L1ME2 LINE L1 5737 6022 -142 2251 79 0 0 chr13 7056901 7057192 -94815977 - AluY SINE Alu -20 291 1 950 241 87 78 chr13 7057192 7057209 -94815960 + L1ME2 LINE L1 6022 6037 -127 1709 144 0 0 chr13 7057209 7057459 -94815710 - AluSq SINE Alu -63 250 1 950 241 87 78 chr13 7057459 7057575 -94815594 + L1ME2 LINE L1 6037 6164 0 352 181 150 8 chr13 7057588 7057721 -94815448 + L1MC5 LINE L1 7773 7924 -37 347 248 0 29 chr13 7057833 7057938 -94815231 + L1ME3A LINE L1 6068 6169 -1 695 219 6 37 chr13 7058408 7058572 -94814597 - FRAM SINE Alu -3 163 5 695 191 28 14 chr13 7058580 7058721 -94814448 - MER5B DNA MER1_type -35 143 1 1835 115 0 0 chr13 7058986 7059239 -94813930 + AluSg SINE Alu 46 298 -12 2166 79 0 36 chr13 7059301 7059606 -94813563 + AluY SINE Alu 1 294 -17 215 303 9 46 chr13 7059878 7059987 -94813182 + MIR SINE MIR 7 111 -97 1878 242 120 2 chr13 7060029 7060513 -94812656 + MLT1H LTR MaLR 9 549 0 976 231 99 0 chr13 7061102 7061384 -94811785 + MER33 DNA MER1_type 1 310 -14 723 19 88 6 chr13 7061505 7061664 -94811505 + (TA)n Simple_repeat Simple_repeat 1 172 0 662 274 39 10 chr13 7061769 7061977 -94811192 - L2 LINE L2 -1199 2115 1902 414 323 0 23 chr13 7061974 7062107 -94811062 + L2 LINE L2 2265 2394 -920 * 2155 266 110 41 chr13 7062107 7063438 -94809731 + L1MEc LINE L1 546 1968 -4428 1030 127 24 24 chr13 7063438 7063603 -94809566 + HUERS-P3 LTR ERV1 3120 3284 -5635 790 221 36 0 chr13 7063596 7063736 -94809433 + HUERS-P3 LTR ERV1 4539 4683 -4236 * 4241 125 8 8 chr13 7063747 7064365 -94808804 + HUERS-P3 LTR ERV1 4960 5577 -3342 3774 188 51 77 chr13 7064350 7064387 -94808782 + HUERS-P3 LTR ERV1 6162 6198 -2721 * 2530 39 0 3 chr13 7064387 7064696 -94808473 + AluY SINE Alu 1 308 -3 3774 188 51 77 chr13 7064696 7065504 -94807665 + HUERS-P3 LTR ERV1 6198 6985 -1934 702 177 86 11 chr13 7065505 7065691 -94807478 + HUERS-P3 LTR ERV1 4144 4343 -537 1355 161 7 14 chr13 7065982 7066232 -94806937 + HUERS-P3 LTR ERV1 7168 8913 -6 3338 183 35 13 chr13 7066241 7066865 -94806304 + LTR9B LTR ERV1 7 644 0 953 273 117 23 chr13 7066881 7067309 -94805860 + MLT1L LTR MaLR 145 612 -3 251 340 141 19 chr13 7068272 7068478 -94804691 - L2 LINE L2 -957 2357 2127 1680 148 13 23 chr13 7068758 7069061 -94804108 - AluSx SINE Alu -12 300 1 225 310 28 0 chr13 7069187 7069258 -94803911 - L2 LINE L2 -12 3301 3229 2285 76 10 0 chr13 7069265 7069566 -94803603 + AluY SINE Alu 1 304 -7 466 203 32 57 chr13 7070182 7070305 -94802864 - FLAM_A SINE Alu -13 120 1 1950 118 31 3 chr13 7071078 7071365 -94801804 + AluSp SINE Alu 1 295 -18 4088 272 110 38 chr13 7071585 7072867 -94800302 - L1ME LINE L1 -482 5688 4499 1646 162 3 26 chr13 7072867 7073170 -94799999 - AluJb SINE Alu -16 296 1 4088 272 110 38 chr13 7073170 7073410 -94799759 - L1ME LINE L1 -1671 4499 4278 405 0 0 0 chr13 7073410 7073455 -94799714 + (TG)n Simple_repeat Simple_repeat 2 46 0 4088 272 110 38 chr13 7073455 7073488 -94799681 - L1ME LINE L1 -1892 4278 4249 1980 129 10 6 chr13 7073488 7073799 -94799370 + AluSx SINE Alu 1 312 0 4088 272 110 38 chr13 7073799 7075154 -94798015 - L1ME LINE L1 -1921 4249 2565 660 304 36 24 chr13 7075363 7075695 -94797474 - L1M4 LINE L1 -1995 4151 3816 1880 154 22 3 chr13 7075766 7076078 -94797091 - L1PA16 LINE L1 -21 6145 5828 2318 92 0 0 chr13 7076078 7076384 -94796785 - AluSq SINE Alu -7 306 1 2062 116 3 0 chr13 7076387 7076698 -94796471 - AluSx SINE Alu 0 312 1 1683 182 51 22 chr13 7076699 7077112 -94796057 - L1 LINE L1 -2139 4007 3583 728 109 0 36 chr13 7077251 7077361 -94795808 - AluSg SINE Alu -176 134 29 9949 142 23 42 chr13 7077361 7077835 -94795334 - L1PA15-16 LINE L1 -3489 3360 2878 351 0 0 0 chr13 7077835 7077874 -94795295 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1926 131 4 0 chr13 7077874 7078148 -94795021 - AluSc SINE Alu -34 275 1 9949 142 23 42 chr13 7078148 7078424 -94794745 - L1PA15-16 LINE L1 -3970 2879 2599 10169 25 19 118 chr13 7078424 7079961 -94793208 + SVA Other Other 3 1386 0 9949 142 23 42 chr13 7079961 7081289 -94791880 - L1PA15-16 LINE L1 -4250 2599 1305 2526 166 15 0 chr13 7081295 7081699 -94791470 - L1PA15-16 LINE L1 -6437 412 3 455 350 110 19 chr13 7081700 7082017 -94791152 - L1M4 LINE L1 -2322 3824 3479 576 144 33 0 chr13 7082028 7082118 -94791051 + AluSg/x SINE Alu 201 293 -16 671 176 119 6 chr13 7082462 7082621 -94790548 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 7083145 7083268 -94789901 - MER112 DNA MER1_type 0 260 139 432 0 0 0 chr13 7083286 7083334 -94789835 + (TG)n Simple_repeat Simple_repeat 2 49 0 593 257 15 49 chr13 7083384 7083597 -94789572 + MIR3 SINE MIR 13 208 0 1981 118 0 11 chr13 7083656 7083935 -94789234 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr13 7083942 7083965 -94789204 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 360 0 0 0 chr13 7084588 7084628 -94788541 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 269 115 13 chr13 7084703 7084781 -94788388 - MIR SINE MIR -29 233 148 755 204 62 138 chr13 7084813 7085362 -94787807 - L1MC5 LINE L1 -50 7911 7405 478 239 39 23 chr13 7085362 7085492 -94787677 - MIR SINE MIR -42 220 89 216 0 0 0 chr13 7085770 7085794 -94787375 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr13 7086840 7086870 -94786299 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2013 126 0 0 chr13 7086873 7087150 -94786019 - AluSx SINE Alu -25 287 11 232 337 20 0 chr13 7088913 7089011 -94784158 + L3b LINE CR1 1125 1224 -359 2161 121 26 10 chr13 7089231 7089538 -94783631 - AluSx SINE Alu 0 312 1 587 316 16 5 chr13 7090283 7090470 -94782699 - MER5A DNA MER1_type 0 189 1 198 239 209 0 chr13 7090823 7090890 -94782279 - L2 LINE L2 -1 3312 3232 244 261 153 9 chr13 7091255 7091366 -94781803 + MIR SINE MIR 81 207 -55 759 187 0 0 chr13 7091662 7091785 -94781384 - AluJb SINE Alu 0 312 190 888 198 210 24 chr13 7091787 7091944 -94781225 - AluSp SINE Alu -4 299 173 1460 127 5 9 chr13 7091944 7092164 -94781005 - AluSc SINE Alu -4 305 87 5837 129 47 17 chr13 7092166 7093107 -94780062 + LTR5 LTR ERVK 1 969 0 888 198 210 24 chr13 7093107 7093198 -94779971 - AluSp SINE Alu -130 173 1 2449 92 0 0 chr13 7093938 7094241 -94778928 + AluSc SINE Alu 1 303 -6 2138 125 10 0 chr13 7094293 7094589 -94778580 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr13 7094594 7094617 -94778552 + (CA)n Simple_repeat Simple_repeat 2 24 0 922 116 0 0 chr13 7095239 7095360 -94777809 - FRAM SINE Alu -28 148 28 2943 183 42 34 chr13 7095360 7095973 -94777196 + MER54A LTR ERVL 284 901 0 891 67 117 0 chr13 7097695 7097815 -94775354 - MER85 DNA T2_type -2 137 4 1798 174 3 10 chr13 7099168 7099478 -94773691 - AluJb SINE Alu -4 308 1 12053 206 21 10 chr13 7100628 7104361 -94768808 - L1PA16 LINE L1 -9 6157 2348 2145 126 0 0 chr13 7104363 7104656 -94768513 + AluSg SINE Alu 1 293 -17 2220 130 0 0 chr13 7107516 7107823 -94765346 - AluSx SINE Alu -5 307 1 1691 210 36 0 chr13 7109264 7109593 -94763576 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 7110252 7110273 -94762896 + AT_rich Low_complexity Low_complexity 1 21 0 3333 125 32 51 chr13 7110290 7110880 -94762289 - LTR14B LTR ERVK -13 595 17 417 295 114 18 chr13 7110975 7111141 -94762028 - MER5A DNA MER1_type 0 189 8 239 368 0 11 chr13 7111176 7111263 -94761906 - MER5A DNA MER1_type -31 158 73 2471 176 55 16 chr13 7111401 7111891 -94761278 - LTR22 LTR ERVK 0 509 1 1744 170 0 14 chr13 7112024 7112313 -94760856 + AluJo SINE Alu 1 285 -27 2149 116 0 25 chr13 7112324 7112644 -94760525 + AluSq SINE Alu 1 312 -1 459 271 172 36 chr13 7113815 7114036 -94759133 + MIR SINE MIR 2 252 -10 243 225 231 31 chr13 7114202 7114362 -94758807 - Charlie7 DNA MER1_type 0 2612 2421 337 269 135 7 chr13 7114602 7114743 -94758426 - L1ME LINE L1 -379 5742 5584 789 169 8 0 chr13 7114762 7114886 -94758283 - FLAM_C SINE Alu -7 126 2 2168 123 0 3 chr13 7115626 7115927 -94757242 + AluSx SINE Alu 1 300 -12 1297 135 5 10 chr13 7117176 7117376 -94755793 - AluSg/x SINE Alu -30 282 84 185 352 77 40 chr13 7117852 7118099 -94755070 - L2 LINE L2 -912 2402 2147 843 215 15 80 chr13 7118224 7118549 -94754620 + L1M4 LINE L1 972 1275 -5267 5328 100 28 10 chr13 7118550 7119350 -94753819 + L1PA16 LINE L1 5351 6164 -2 2312 192 61 42 chr13 7119343 7119453 -94753716 + L1M4 LINE L1 1255 1361 -5285 * 1765 159 30 14 chr13 7119453 7119749 -94753420 + AluJo SINE Alu 7 307 -5 2312 192 61 42 chr13 7119749 7120289 -94752880 + L1M4 LINE L1 1361 1918 -4728 1738 177 14 0 chr13 7120292 7120574 -94752595 + AluJb SINE Alu 4 289 -23 2219 112 3 0 chr13 7120921 7121215 -94751954 + AluSp SINE Alu 1 295 -18 1834 137 3 27 chr13 7121394 7121686 -94751483 - LTR22A LTR ERVK 0 458 174 6746 103 9 3 chr13 7121686 7122615 -94750554 - HERVK22 LTR ERVK -3760 3077 2144 6071 132 20 2 chr13 7122615 7123532 -94749637 - HERVK22 LTR ERVK -5902 935 3 3105 121 4 11 chr13 7123534 7123989 -94749180 - LTR22A LTR ERVK 0 458 7 787 194 65 19 chr13 7124035 7124190 -94748979 - AluJo/FRAM SINE Alu -17 295 134 479 195 52 0 chr13 7124193 7124270 -94748899 - AluJ/FLAM SINE Alu -230 82 2 847 156 0 8 chr13 7124375 7124503 -94748666 + FLAM_C SINE Alu 2 128 -5 472 278 60 60 chr13 7124655 7124889 -94748280 - MIR SINE MIR -14 248 15 2532 53 0 22 chr13 7125519 7125837 -94747332 + AluY SINE Alu 1 311 0 223 218 23 35 chr13 7126334 7126421 -94746748 + A-rich Low_complexity Low_complexity 2 87 0 542 120 20 30 chr13 7127512 7127612 -94745557 - L1MA10 LINE L1 -1 6333 6235 252 208 0 0 chr13 7128089 7128142 -94745027 - L1ME3A LINE L1 -11 6159 6107 2129 209 43 9 chr13 7128178 7128624 -94744545 - MER65C LTR ERV1 0 461 1 307 255 0 0 chr13 7128638 7128724 -94744445 - L1ME3 LINE L1 -174 5996 5911 2167 124 0 19 chr13 7128725 7129032 -94744137 + AluSx SINE Alu 1 301 -11 3776 185 54 68 chr13 7129135 7129580 -94743589 - Charlie5 DNA MER1_type -846 1778 1328 1829 156 3 29 chr13 7129580 7129887 -94743282 + AluJb SINE Alu 1 299 -13 3776 185 54 68 chr13 7129887 7129934 -94743235 - Charlie5 DNA MER1_type -1296 1328 1282 1666 172 10 10 chr13 7129934 7130237 -94742932 + AluJb SINE Alu 3 305 -7 3776 185 54 68 chr13 7130237 7130738 -94742431 - Charlie5 DNA MER1_type -1342 1282 798 800 205 0 13 chr13 7130738 7130889 -94742280 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 7130885 7130928 -94742241 - Tigger2 DNA MER2_type -253 2465 2423 * 1575 150 71 11 chr13 7130981 7131261 -94741908 + Tigger2 DNA MER2_type 2422 2718 0 3110 201 84 10 chr13 7131270 7131598 -94741571 - Charlie5 DNA MER1_type -1834 790 488 1728 168 118 28 chr13 7131598 7131961 -94741208 + MSTD LTR MaLR 1 396 0 3110 201 84 10 chr13 7131961 7132360 -94740809 - Charlie5 DNA MER1_type -2136 488 9 2237 77 7 13 chr13 7132383 7132683 -94740486 - AluY SINE Alu -13 298 1 481 248 121 27 chr13 7132715 7133010 -94740159 - L1MC4a LINE L1 -1903 5905 5548 248 244 81 24 chr13 7133113 7133236 -94739933 - L1MC4a LINE L1 -2331 5477 5348 1518 240 271 25 chr13 7133401 7133821 -94739348 + L2 LINE L2 1548 1863 -1451 220 36 0 0 chr13 7133821 7133849 -94739320 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2185 85 21 4 chr13 7133849 7134130 -94739039 - AluSq SINE Alu -1 313 1 1518 240 271 25 chr13 7134130 7134438 -94738731 + L2 LINE L2 1862 2457 -857 257 212 106 97 chr13 7134421 7134534 -94738635 - L2 LINE L2 -2674 640 527 * 206 32 32 0 chr13 7134540 7134571 -94738598 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1984 139 3 7 chr13 7134571 7134860 -94738309 - AluSx SINE Alu -18 289 1 813 150 0 8 chr13 7134862 7134989 -94738180 - AluJb SINE Alu -16 296 171 380 261 369 11 chr13 7134997 7135357 -94737812 - L2 LINE L2 -2793 521 33 403 319 292 0 chr13 7135424 7135585 -94737584 + L2 LINE L2 2973 3086 -227 204 40 0 0 chr13 7135585 7135610 -94737559 + (TG)n Simple_repeat Simple_repeat 2 26 0 403 319 292 0 chr13 7135610 7135708 -94737461 + L2 LINE L2 3086 3308 -5 1015 144 6 35 chr13 7137934 7138108 -94735061 + AluJo SINE Alu 120 288 -24 204 242 22 132 chr13 7138598 7138689 -94734480 - L2 LINE L2 -5 3267 3187 193 303 110 19 chr13 7138680 7138835 -94734334 + L3 LINE CR1 1101 1269 -308 * 604 197 25 8 chr13 7139004 7139126 -94734043 - Charlie1 DNA MER1_type 0 2761 2638 2119 109 7 3 chr13 7139127 7139411 -94733758 + AluSx SINE Alu 1 285 -27 683 219 0 0 chr13 7139952 7140071 -94733098 - FLAM_A SINE Alu -10 123 5 2105 130 7 3 chr13 7140114 7140407 -94732762 - AluSx SINE Alu -18 294 1 706 251 51 122 chr13 7140499 7141025 -94732144 - L1MC4 LINE L1 -1 8041 7553 1523 137 76 54 chr13 7141035 7141335 -94731834 - AluSx SINE Alu 0 306 1 35 63 0 0 chr13 7142017 7142080 -94731089 + AT_rich Low_complexity Low_complexity 1 63 0 233 296 157 0 chr13 7144678 7144786 -94728383 - L1MC/D LINE L1 -1904 5904 5780 389 221 136 14 chr13 7144906 7145046 -94728123 - L1ME4a LINE L1 -6 6115 5959 1405 189 148 84 chr13 7146005 7146444 -94726725 - MLT1C LTR MaLR 0 467 1 251 180 0 33 chr13 7146496 7146557 -94726612 + MER46C DNA MER2_type 83 141 -197 692 254 35 22 chr13 7146772 7147000 -94726169 - L1M4c LINE L1 -6124 260 30 392 192 26 0 chr13 7147015 7147093 -94726076 + MER46C DNA MER2_type 256 335 -3 382 269 37 37 chr13 7147479 7147613 -94725556 - MIR SINE MIR -108 154 21 1987 151 3 0 chr13 7147636 7147941 -94725228 - AluJb SINE Alu -6 306 1 364 281 97 42 chr13 7148173 7148411 -94724758 - L1ME4a LINE L1 -2262 5546 5296 931 268 236 20 chr13 7148503 7148999 -94724170 + L2 LINE L2 2149 2536 -777 2130 80 23 47 chr13 7148999 7149298 -94723871 - AluSp SINE Alu -21 292 1 931 268 236 20 chr13 7149298 7149674 -94723495 + L2 LINE L2 2536 3215 -98 887 167 54 12 chr13 7149676 7149844 -94723325 - AluJo SINE Alu -17 295 121 291 307 0 0 chr13 7149844 7149919 -94723250 + L2 LINE L2 3236 3310 -3 409 234 103 0 chr13 7150680 7150825 -94722344 + L1M4 LINE L1 5021 5180 -966 517 218 84 101 chr13 7151226 7151455 -94721714 - L1MC5 LINE L1 -35 7926 7704 1875 132 7 7 chr13 7151455 7151735 -94721434 + AluSx SINE Alu 1 280 -32 517 218 84 101 chr13 7151735 7151872 -94721297 - L1MC5 LINE L1 -257 7704 7566 243 281 18 0 chr13 7152172 7152229 -94720940 - L2 LINE L2 0 3272 3215 359 224 109 90 chr13 7152229 7152385 -94720784 - L1MC/D LINE L1 -2098 5710 5552 1032 145 70 0 chr13 7152398 7152570 -94720599 - AluSg/x SINE Alu -11 299 116 529 250 30 43 chr13 7153103 7153267 -94719902 - MER3 DNA MER1_type 0 209 48 280 272 152 0 chr13 7153726 7153818 -94719351 - L2 LINE L2 -4 3268 3163 365 267 64 45 chr13 7153818 7154020 -94719149 - L1MC4 LINE L1 -965 7077 6872 2102 72 72 10 chr13 7154032 7154357 -94718812 - AluY SINE Alu 0 343 1 1136 185 37 8 chr13 7157055 7157298 -94715871 + L1MB3 LINE L1 5931 6180 -3 589 231 32 32 chr13 7157490 7157646 -94715523 - L2 LINE L2 -38 3275 3120 604 267 287 22 chr13 7157879 7158929 -94714240 - L2 LINE L2 -537 2777 1450 304 275 180 5 chr13 7159332 7159521 -94713648 - L1MC4 LINE L1 0 8042 7821 284 167 39 13 chr13 7159622 7159700 -94713469 - L2 LINE L2 -2464 850 771 946 170 71 11 chr13 7160585 7160767 -94712402 + MER46A DNA MER2_type 44 236 0 325 304 121 4 chr13 7161040 7161432 -94711737 - L1MC/D LINE L1 -592 5570 5127 698 225 0 0 chr13 7161702 7161831 -94711338 + Tigger1 DNA MER2_type 10 138 -2280 3917 96 19 13 chr13 7161843 7162366 -94710803 - MER1A DNA MER1_type -1 526 1 352 198 86 35 chr13 7162389 7162505 -94710664 - L1M4 LINE L1 -905 5241 5120 444 244 74 15 chr13 7162795 7162930 -94710239 + MIR SINE MIR 49 191 -71 241 229 43 29 chr13 7163169 7163239 -94709930 + MER116 DNA Mariner 1 71 -9 219 301 73 32 chr13 7163290 7163413 -94709756 + L2 LINE L2 2618 2745 -569 227 267 0 0 chr13 7163423 7163483 -94709686 + Charlie7 DNA MER1_type 38 97 -2515 21 36 0 0 chr13 7163924 7163952 -94709217 + AT_rich Low_complexity Low_complexity 1 28 0 562 203 13 51 chr13 7164923 7165081 -94708088 + L1MC5 LINE L1 7059 7210 -751 30 59 0 0 chr13 7166228 7166279 -94706890 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr13 7167234 7167257 -94705912 + AT_rich Low_complexity Low_complexity 1 23 0 642 187 0 0 chr13 7167384 7167839 -94705330 + (TA)n Simple_repeat Simple_repeat 1 455 0 22 35 0 0 chr13 7168791 7168820 -94704349 + GC_rich Low_complexity Low_complexity 1 29 0 2293 95 0 25 chr13 7170475 7170791 -94702378 - AluSx SINE Alu -4 308 1 1136 142 6 0 chr13 7171030 7171206 -94701963 - AluSg/x SINE Alu 0 310 134 195 42 0 0 chr13 7171476 7171500 -94701669 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1900 150 0 7 chr13 7171503 7171789 -94701380 - AluSx SINE Alu -28 284 1 1308 214 23 8 chr13 7172037 7172303 -94700866 - L1MB8 LINE L1 -6 6172 5903 26 0 0 0 chr13 7173036 7173062 -94700107 + AT_rich Low_complexity Low_complexity 1 26 0 642 257 30 15 chr13 7174069 7174271 -94698898 + L1MA6 LINE L1 5746 5950 -350 490 213 9 0 chr13 7174272 7174380 -94698789 + L1MA4A LINE L1 5746 5854 -449 538 127 218 0 chr13 7174423 7174533 -94698636 - MER1B DNA MER1_type -163 134 1 364 282 117 70 chr13 7174533 7174746 -94698423 + L2 LINE L2 2673 2895 -419 270 116 47 0 chr13 7175491 7175555 -94697614 - Alu SINE Alu 0 306 241 2210 92 7 10 chr13 7175611 7175949 -94697220 + AluSx SINE Alu 1 312 0 1700 162 7 23 chr13 7176345 7176647 -94696522 + AluJb SINE Alu 2 298 -14 384 335 60 38 chr13 7176657 7177105 -94696064 - L1ME4a LINE L1 -143 5978 5521 2257 121 0 0 chr13 7179054 7179359 -94693810 - AluSx SINE Alu -7 305 1 1221 120 54 7 chr13 7179575 7179939 -94693230 + MSTA LTR MaLR 3 426 -2 2216 97 3 19 chr13 7180529 7180838 -94692331 + AluSc SINE Alu 1 304 -5 203 189 0 57 chr13 7181433 7181486 -94691683 + GA-rich Low_complexity Low_complexity 2 51 0 2089 77 14 7 chr13 7181592 7181878 -94691291 + AluSx SINE Alu 1 288 -24 2702 133 29 16 chr13 7182132 7182795 -94690374 + L1M2 LINE L1 4915 5584 -728 272 310 106 9 chr13 7183372 7183485 -94689684 - L2 LINE L2 -518 2796 2673 2073 122 6 6 chr13 7183817 7184129 -94689040 + AluSx SINE Alu 1 312 0 2397 58 0 48 chr13 7184935 7185247 -94687922 - AluY SINE Alu -14 297 1 324 0 0 0 chr13 7186619 7186655 -94686514 + (TG)n Simple_repeat Simple_repeat 2 37 0 2522 41 0 0 chr13 7186753 7187045 -94686124 - AluY SINE Alu -19 292 1 201 275 0 0 chr13 7187241 7187281 -94685888 - L2 LINE L2 -2918 396 357 1659 128 0 8 chr13 7187676 7187918 -94685251 + AluSx SINE Alu 1 240 -72 225 154 0 0 chr13 7187928 7187967 -94685202 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1065 127 33 0 chr13 7188806 7188956 -94684213 + AluJb SINE Alu 130 284 -28 2246 105 0 0 chr13 7189198 7189493 -94683676 + AluSc SINE Alu 1 295 -14 2223 105 0 0 chr13 7190018 7190314 -94682855 - AluY SINE Alu -15 296 1 243 217 36 84 chr13 7190445 7190528 -94682641 + MIR SINE MIR 117 195 -67 22 0 0 0 chr13 7191855 7191877 -94681292 + AT_rich Low_complexity Low_complexity 1 22 0 316 219 45 69 chr13 7192689 7192875 -94680294 - L1MC/D LINE L1 -2339 5469 5289 1012 221 16 72 chr13 7192890 7193197 -94679972 - AluJo SINE Alu -12 290 1 321 313 136 43 chr13 7193197 7193467 -94679702 - L1MC/D LINE L1 -842 5304 5061 2166 83 7 0 chr13 7193467 7193745 -94679424 + AluSp SINE Alu 15 294 -19 321 313 136 43 chr13 7193745 7194097 -94679072 - L1MC/D LINE L1 -1085 5061 4624 201 94 0 0 chr13 7194156 7194188 -94678981 + (T)n Simple_repeat Simple_repeat 1 32 0 4962 129 38 21 chr13 7194274 7194336 -94678833 + L1PA16 LINE L1 5286 5345 -821 2389 73 0 7 chr13 7194336 7194638 -94678531 - AluY SINE Alu -9 302 3 4962 129 38 21 chr13 7194638 7195438 -94677731 + L1PA16 LINE L1 5345 6163 -3 23 33 0 0 chr13 7195877 7195907 -94677262 + AT_rich Low_complexity Low_complexity 1 30 0 2104 116 0 26 chr13 7195929 7196239 -94676930 - AluSx SINE Alu -10 302 1 21 0 0 0 chr13 7196962 7196983 -94676186 + AT_rich Low_complexity Low_complexity 1 21 0 1720 181 0 7 chr13 7196988 7197280 -94675889 - AluJo SINE Alu -22 290 1 261 348 31 10 chr13 7198161 7198261 -94674908 - MIR SINE MIR -99 109 7 590 280 21 74 chr13 7198367 7198610 -94674559 - MER102b DNA MER1_type -1 340 111 872 125 0 0 chr13 7199116 7199236 -94673933 + FLAM_C SINE Alu 2 121 -12 21 0 0 0 chr13 7199510 7199531 -94673638 + AT_rich Low_complexity Low_complexity 1 21 0 1899 163 0 3 chr13 7199709 7200003 -94673166 + AluJb SINE Alu 1 293 -19 236 289 126 50 chr13 7200241 7200400 -94672769 - L3 LINE CR1 -88 1489 1319 1944 150 6 25 chr13 7200637 7200951 -94672218 + AluSx SINE Alu 1 308 -4 300 143 0 79 chr13 7202144 7202207 -94670962 - MLT1C LTR MaLR -409 58 1 1213 169 22 142 chr13 7202211 7202346 -94670823 - MLT1C-int LTR MaLR -4 1367 1217 1935 148 0 0 chr13 7202346 7202624 -94670545 + AluSx SINE Alu 17 294 -18 1213 169 22 142 chr13 7202624 7202854 -94670315 - MLT1C-int LTR MaLR -154 1217 1046 1620 188 10 23 chr13 7203080 7203383 -94669786 + AluJo SINE Alu 1 299 -13 1525 177 0 71 chr13 7203917 7204228 -94668941 - AluJo SINE Alu -23 289 1 937 177 11 17 chr13 7204317 7204492 -94668677 + AluJo SINE Alu 35 208 -104 8660 218 119 29 chr13 7204493 7206439 -94666730 - L1M4 LINE L1 -846 5536 3767 2125 104 10 7 chr13 7206439 7206737 -94666432 - AluY SINE Alu -12 299 1 8660 218 119 29 chr13 7206737 7209386 -94663783 - L1M4 LINE L1 -2615 3767 526 289 200 0 0 chr13 7212135 7212180 -94660989 + MER3 DNA MER1_type 46 90 -119 * 866 115 7 47 chr13 7212141 7212289 -94660880 - MER3 DNA MER1_type -4 205 64 769 180 90 198 chr13 7212289 7212733 -94660436 - MSTD LTR MaLR 0 396 1 464 370 94 36 chr13 7212799 7213320 -94659849 - L2 LINE L2 -550 2764 2214 250 314 176 17 chr13 7214034 7214273 -94658896 - L2 LINE L2 -1093 2221 1945 253 286 101 25 chr13 7214590 7214709 -94658460 + L3 LINE CR1 476 603 -974 1698 181 7 3 chr13 7216123 7216411 -94656758 + AluJb SINE Alu 1 289 -23 1833 155 18 3 chr13 7216466 7216750 -94656419 - AluSx SINE Alu -24 288 1 26 0 0 0 chr13 7216981 7217007 -94656162 + AT_rich Low_complexity Low_complexity 1 26 0 285 266 75 0 chr13 7217156 7217250 -94655919 - L1MC4a LINE L1 -1869 5939 5839 27 29 0 0 chr13 7218048 7218082 -94655087 + AT_rich Low_complexity Low_complexity 1 34 0 4460 152 67 17 chr13 7219205 7219437 -94653732 + MER6 DNA MER2_type 1 220 -645 360 0 0 0 chr13 7219437 7219477 -94653692 + (TG)n Simple_repeat Simple_repeat 2 41 0 4460 152 67 17 chr13 7219477 7220067 -94653102 + MER6 DNA MER2_type 220 864 -1 500 262 166 0 chr13 7220292 7220479 -94652690 + MIR SINE MIR 26 243 -19 398 265 31 10 chr13 7222730 7222828 -94650341 + L2 LINE L2 3200 3299 -14 314 262 119 0 chr13 7222855 7222981 -94650188 + L1ME4a LINE L1 5978 6118 -3 1473 164 80 0 chr13 7223102 7223364 -94649805 + AluJb SINE Alu 11 293 -19 1870 108 4 4 chr13 7223706 7223975 -94649194 - AluSg1 SINE Alu 0 309 41 1472 161 37 37 chr13 7224500 7224798 -94648371 + AluJo SINE Alu 1 298 -14 1731 149 46 7 chr13 7225028 7225310 -94647859 - AluSg SINE Alu -12 298 6 1655 152 37 4 chr13 7225721 7225990 -94647179 + AluJo SINE Alu 1 278 -34 21 0 0 0 chr13 7226191 7226212 -94646957 + AT_rich Low_complexity Low_complexity 1 21 0 553 265 125 5 chr13 7226647 7226847 -94646322 - MIR SINE MIR -38 224 1 3283 147 46 18 chr13 7226932 7227611 -94645558 - L1MB4 LINE L1 -7 6671 5974 5579 50 81 1 chr13 7227623 7228367 -94644802 - L1PA7 LINE L1 -2 6152 5350 42764 33 23 1 chr13 7228379 7234402 -94638767 - L1PA3 LINE L1 0 6155 2 2349 77 0 3 chr13 7234418 7234715 -94638454 - AluY SINE Alu -15 296 1 778 133 36 182 chr13 7234716 7234886 -94638283 - L1MB4 LINE L1 -709 5969 5845 1638 194 13 3 chr13 7234886 7235185 -94637984 - AluJo SINE Alu -6 306 5 778 133 36 182 chr13 7235185 7235292 -94637877 - L1MB4 LINE L1 -833 5845 5724 1913 171 65 36 chr13 7235293 7235364 -94637805 - Tigger2a DNA MER2_type -2274 434 367 1434 172 12 106 chr13 7235364 7235695 -94637474 - AluJo SINE Alu -2 300 1 1913 171 65 36 chr13 7235695 7236037 -94637132 - Tigger2a DNA MER2_type -2341 367 9 4063 185 43 138 chr13 7236044 7237162 -94636007 - L1MB4 LINE L1 -920 5724 4501 414 0 0 0 chr13 7237162 7237208 -94635961 + (TG)n Simple_repeat Simple_repeat 2 47 0 4063 185 43 138 chr13 7237208 7237616 -94635553 - L1MB4 LINE L1 -2143 4501 4355 1609 201 0 16 chr13 7237616 7237930 -94635239 - AluJb SINE Alu 0 312 4 4063 185 43 138 chr13 7237930 7238005 -94635164 - L1MB4 LINE L1 -2289 4355 4274 2096 169 26 3 chr13 7238005 7238354 -94634815 - MER73 LTR ERVL 0 644 288 * 2195 174 23 8 chr13 7238350 7238734 -94634435 - MER54A LTR ERVL -509 392 3 4758 218 51 21 chr13 7238735 7239170 -94633999 - L1MB4 LINE L1 -2367 4277 3856 2127 126 7 0 chr13 7239170 7239464 -94633705 + AluSx SINE Alu 1 296 -16 4758 218 51 21 chr13 7239464 7240731 -94632438 - L1MB4 LINE L1 -2788 3856 2521 2008 177 93 7 chr13 7240762 7241213 -94631956 - L1MB2 LINE L1 -1 6170 5681 * 3901 189 123 55 chr13 7241212 7241843 -94631326 - L1MB4 LINE L1 -4125 2521 1934 2280 103 3 3 chr13 7241843 7242155 -94631014 - AluSx SINE Alu 0 312 1 216 0 0 0 chr13 7242156 7242180 -94630989 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1974 132 3 3 chr13 7242182 7242469 -94630700 - AluSx SINE Alu -25 287 1 3901 189 123 55 chr13 7242469 7242649 -94630520 - L1MB4 LINE L1 -4712 1934 1768 1920 208 47 13 chr13 7242649 7243101 -94630068 - MLT1C LTR MaLR 0 467 1 3901 189 123 55 chr13 7243101 7243531 -94629638 - L1MB4 LINE L1 -4878 1768 1189 3040 146 64 39 chr13 7243615 7244144 -94629025 - LTR9 LTR ERV1 -37 575 30 1973 143 7 0 chr13 7244144 7244451 -94628718 - AluSx SINE Alu -1 311 3 3040 146 64 39 chr13 7244451 7244482 -94628687 - LTR9 LTR ERV1 -582 30 1 508 207 107 0 chr13 7244651 7244791 -94628378 - L1M2 LINE L1 -4159 2690 2536 2094 118 0 0 chr13 7244826 7245105 -94628064 - AluSg SINE Alu -31 279 1 445 211 68 23 chr13 7245137 7245270 -94627899 - L1MB4 LINE L1 -5587 955 817 405 278 23 8 chr13 7245358 7245491 -94627678 - L1MB4 LINE L1 -5710 936 802 309 249 93 63 chr13 7245796 7246001 -94627168 - L1MB4 LINE L1 -6293 249 39 276 264 64 43 chr13 7246402 7246542 -94626627 + L1MC4 LINE L1 7190 7332 -710 255 256 65 87 chr13 7246648 7246952 -94626217 + L1MC4 LINE L1 7274 7677 -365 1945 128 11 3 chr13 7248230 7248512 -94624657 + AluSx SINE Alu 7 290 -22 2387 90 3 0 chr13 7248512 7248812 -94624357 + AluSp SINE Alu 1 301 -12 1062 118 0 20 chr13 7248812 7248965 -94624204 - AluSq/x SINE Alu -162 151 2 1100 155 98 136 chr13 7249188 7249253 -94623916 - MLT1A1 LTR MaLR 0 365 299 1955 5 0 0 chr13 7249253 7249465 -94623704 + AluYa5 SINE Alu 100 311 0 1100 155 98 136 chr13 7249465 7249767 -94623402 - MLT1A1 LTR MaLR -66 299 12 349 254 98 33 chr13 7250163 7250285 -94622884 - HAL1 LINE L1 -100 2407 2278 1360 182 102 15 chr13 7250555 7250819 -94622350 - AluJb SINE Alu -25 287 1 600 277 80 9 chr13 7250834 7251058 -94622111 - HAL1 LINE L1 -628 1879 1640 454 220 87 144 chr13 7251694 7251958 -94621211 - MIR SINE MIR -10 252 4 2189 107 0 10 chr13 7252891 7253190 -94619979 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr13 7253743 7253765 -94619404 + AT_rich Low_complexity Low_complexity 1 22 0 808 245 76 8 chr13 7254236 7254473 -94618696 + MER46C DNA MER2_type 86 338 0 1849 164 0 10 chr13 7254479 7254778 -94618391 - AluJo SINE Alu -16 296 1 208 198 169 0 chr13 7254972 7255028 -94618141 - MIR SINE MIR -76 132 67 2025 118 3 37 chr13 7255856 7256179 -94616990 + AluSx SINE Alu 1 312 0 13885 190 32 29 chr13 7256182 7262577 -94610592 + L1PB1 LINE L1 136 6864 -3 2337 73 0 23 chr13 7263361 7263662 -94609507 + AluSx SINE Alu 1 294 -18 1805 122 11 8 chr13 7264431 7264694 -94608475 + AluSx SINE Alu 42 305 -7 2179 110 0 3 chr13 7264921 7265213 -94607956 + AluSg SINE Alu 1 291 -19 464 213 46 9 chr13 7265256 7265364 -94607805 - L1ME1 LINE L1 -6 6160 6049 25 0 0 0 chr13 7265657 7265682 -94607487 + AT_rich Low_complexity Low_complexity 1 25 0 1247 294 88 13 chr13 7265837 7266292 -94606877 - L2 LINE L2 0 3313 2825 22 0 0 0 chr13 7266790 7266812 -94606357 + AT_rich Low_complexity Low_complexity 1 22 0 717 191 30 0 chr13 7267631 7267762 -94605407 + FRAM SINE Alu 1 135 -41 364 283 172 0 chr13 7267762 7267907 -94605262 - L3 LINE CR1 -731 846 677 1335 98 113 0 chr13 7268285 7268489 -94604680 + MER30 DNA MER1_type 4 230 0 496 224 97 30 chr13 7268801 7268966 -94604203 - MIR SINE MIR -1 261 86 2249 119 3 0 chr13 7269018 7269329 -94603840 - AluSx SINE Alu 0 312 1 409 329 127 21 chr13 7269711 7269948 -94603221 - MIR SINE MIR 0 262 1 653 172 6 38 chr13 7269986 7270064 -94603105 - L1MB3 LINE L1 -12 6171 6099 2283 106 0 3 chr13 7270064 7270366 -94602803 + AluSx SINE Alu 1 301 -11 653 172 6 38 chr13 7270366 7270444 -94602725 - L1MB3 LINE L1 -84 6099 6020 23 33 0 0 chr13 7270446 7270476 -94602693 + AT_rich Low_complexity Low_complexity 1 30 0 689 218 0 0 chr13 7270728 7270852 -94602317 + FLAM_A SINE Alu 1 124 -9 330 329 7 20 chr13 7270928 7271022 -94602147 - MARNA DNA Mariner -179 407 314 1439 91 68 27 chr13 7271022 7271243 -94601926 - MER30 DNA MER1_type 0 230 1 330 329 7 20 chr13 7271243 7271294 -94601875 - MARNA DNA Mariner -272 314 264 384 301 0 32 chr13 7271575 7271698 -94601471 - L2 LINE L2 -5 3267 3149 2236 93 3 0 chr13 7272689 7272978 -94600191 - AluSp SINE Alu -23 290 1 2537 57 0 0 chr13 7273821 7274122 -94599047 - AluY SINE Alu -10 301 1 225 0 0 0 chr13 7274593 7274618 -94598551 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2069 125 0 0 chr13 7274618 7274898 -94598271 - AluSx SINE Alu -32 280 1 318 238 30 50 chr13 7275918 7276019 -94597150 + MIR SINE MIR 164 262 0 1056 288 95 29 chr13 7276719 7277032 -94596137 - L1ME3 LINE L1 -211 5951 5660 2201 101 7 14 chr13 7277032 7277328 -94595841 + AluSg SINE Alu 1 294 -16 1056 288 95 29 chr13 7277328 7277823 -94595346 - L1ME3 LINE L1 -502 5660 5054 2307 100 0 3 chr13 7277823 7278123 -94595046 + AluSg SINE Alu 1 299 -11 1056 288 95 29 chr13 7278123 7278427 -94594742 - L1ME3 LINE L1 -1108 5054 4771 490 232 21 0 chr13 7279234 7279304 -94593865 - MER69 DNA AcHobo -2 2524 2457 1731 163 22 0 chr13 7279304 7279581 -94593588 + AluJb SINE Alu 1 283 -29 490 232 21 0 chr13 7279581 7279652 -94593517 - MER69 DNA AcHobo -69 2457 2380 288 183 157 166 chr13 7280016 7280251 -94592918 - MIR SINE MIR -24 238 6 24 0 0 0 chr13 7281289 7281313 -94591856 + AT_rich Low_complexity Low_complexity 1 24 0 334 276 163 44 chr13 7281481 7281684 -94591485 - MIR SINE MIR -1 261 35 1748 172 3 7 chr13 7282566 7282863 -94590306 - AluJb SINE Alu -16 296 1 21 36 0 0 chr13 7282906 7282934 -94590235 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr13 7283098 7283146 -94590023 + AT_rich Low_complexity Low_complexity 1 48 0 1120 196 84 39 chr13 7283382 7283521 -94589648 - MLT1F LTR MaLR 0 542 411 1791 159 77 11 chr13 7283521 7283873 -94589296 - THE1C LTR MaLR 0 375 1 1120 196 84 39 chr13 7283873 7284018 -94589151 - MLT1F LTR MaLR -131 411 245 352 327 155 9 chr13 7285596 7285945 -94587224 - L2 LINE L2 -26 3287 2888 3701 172 87 38 chr13 7287964 7288895 -94584274 - L1MB8 LINE L1 0 6178 5200 599 216 36 0 chr13 7288895 7289006 -94584163 - FLAM_A SINE Alu -18 115 1 3701 172 87 38 chr13 7289006 7289109 -94584060 - L1MB8 LINE L1 -978 5200 5104 2864 3 0 0 chr13 7289870 7290175 -94582994 + AluYa5 SINE Alu 1 305 -6 402 236 217 19 chr13 7290724 7290885 -94582284 + L2 LINE L2 3121 3313 0 1008 221 206 48 chr13 7291097 7291443 -94581726 - MLT1F LTR MaLR -8 534 96 1691 177 3 29 chr13 7291443 7291616 -94581553 - AluJo SINE Alu -9 303 140 2421 70 0 19 chr13 7291616 7291928 -94581241 - AluY SINE Alu -5 306 1 1691 177 3 29 chr13 7291928 7292065 -94581104 - AluJo SINE Alu -172 140 1 1008 221 206 48 chr13 7292065 7292179 -94580990 - MLT1F LTR MaLR -446 96 1 264 300 100 0 chr13 7292529 7292629 -94580540 - MIR SINE MIR -53 209 100 2079 131 14 0 chr13 7293018 7293315 -94579854 - AluSx SINE Alu -11 301 1 2237 104 3 0 chr13 7293315 7293612 -94579557 - AluSg SINE Alu -12 298 1 2258 93 30 3 chr13 7293640 7293941 -94579228 - AluSp SINE Alu -4 309 1 190 237 26 0 chr13 7294224 7294262 -94578907 - L2 LINE L2 -20 3252 3214 238 135 0 0 chr13 7294449 7294486 -94578683 + L1MA4A LINE L1 6173 6209 -94 226 187 93 27 chr13 7295037 7295112 -94578057 + HAL1b LINE L1 1228 1307 -41 3809 105 58 27 chr13 7295117 7295737 -94577432 - L1MA4A LINE L1 -8 6295 5657 3948 181 45 36 chr13 7296054 7296096 -94577073 - L1MB3 LINE L1 -1 6182 6142 2260 84 7 10 chr13 7296096 7296393 -94576776 - AluSx SINE Alu -16 296 1 3948 181 45 36 chr13 7296393 7296737 -94576432 - L1MB3 LINE L1 -41 6142 5803 8386 117 56 5 chr13 7296737 7297974 -94575195 + HSMAR2 DNA Mariner 2 1301 -1 3948 181 45 36 chr13 7297974 7298638 -94574531 - L1MB3 LINE L1 -380 5803 5021 425 251 160 76 chr13 7299555 7299830 -94573339 + MER102b DNA MER1_type 17 314 -27 2094 198 97 20 chr13 7300063 7300558 -94572611 - MLT2B3 LTR ERVL -21 533 1 2078 138 81 3 chr13 7301753 7302101 -94571068 - THE1C LTR MaLR 0 375 1 394 264 165 39 chr13 7302395 7302835 -94570334 - L1ME LINE L1 -519 5645 5127 2099 112 49 0 chr13 7302835 7303121 -94570048 - AluSx SINE Alu -12 300 1 394 264 165 39 chr13 7303121 7303177 -94569992 - L1ME LINE L1 -1037 5127 5079 384 218 34 0 chr13 7303266 7303413 -94569756 + (TA)n Simple_repeat Simple_repeat 2 153 0 230 149 0 21 chr13 7303419 7303466 -94569703 + Alu SINE Alu 59 104 -198 2091 137 3 0 chr13 7303683 7303983 -94569186 - AluSx SINE Alu -11 301 1 225 151 57 38 chr13 7304221 7304274 -94568895 - L2 LINE L2 -12 3260 3207 2499 56 0 34 chr13 7304456 7304778 -94568391 + AluY SINE Alu 1 311 0 23 33 0 0 chr13 7305343 7305373 -94567796 + AT_rich Low_complexity Low_complexity 1 30 0 230 232 18 0 chr13 7306090 7306146 -94567023 + MLT1B LTR MaLR 334 390 0 204 97 0 0 chr13 7306566 7306597 -94566572 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 68 7 58 chr13 7306965 7307275 -94565894 + AluY SINE Alu 5 298 -13 317 324 14 0 chr13 7307704 7307825 -94565344 + L1ME LINE L1 321 445 -5625 435 248 101 0 chr13 7307872 7307981 -94565188 + L1ME LINE L1 2667 2786 -3294 717 248 85 30 chr13 7307983 7308314 -94564855 + L1MC4 LINE L1 7689 8037 -5 232 168 65 194 chr13 7308990 7309145 -94564024 + LTR67 LTR ERVL 46 180 -377 2755 176 53 4 chr13 7309338 7309865 -94563304 - L1MB5 LINE L1 -50 6124 5572 413 165 12 12 chr13 7309866 7309951 -94563218 + LTR67 LTR ERVL 471 555 -2 239 328 0 0 chr13 7309953 7310014 -94563155 - MIR SINE MIR -113 149 89 2623 52 3 3 chr13 7310433 7310743 -94562426 - AluY SINE Alu -1 310 1 3327 179 104 20 chr13 7312060 7312771 -94560398 - MER21A LTR ERV1 -160 771 1 287 257 29 0 chr13 7313628 7313698 -94559471 + GA-rich Low_complexity Low_complexity 2 73 0 21 0 0 0 chr13 7314497 7314518 -94558651 + AT_rich Low_complexity Low_complexity 1 21 0 4127 160 48 9 chr13 7314524 7315770 -94557399 - L1MA8 LINE L1 -274 6017 4723 312 221 26 13 chr13 7316258 7316335 -94556834 + MER116 DNA Mariner 3 80 0 321 249 86 96 chr13 7316629 7316761 -94556408 - L1MB5 LINE L1 -847 5299 5167 1966 142 3 7 chr13 7316761 7317057 -94556112 - AluJb SINE Alu -15 297 3 321 249 86 96 chr13 7317057 7317237 -94555932 - L1MB5 LINE L1 -979 5167 4990 2532 53 0 22 chr13 7317664 7317982 -94555187 - AluY SINE Alu 0 311 1 471 270 64 60 chr13 7318612 7318845 -94554324 + MIR SINE MIR 15 248 -14 847 156 0 8 chr13 7318997 7319125 -94554044 - FLAM_C SINE Alu -5 128 2 1791 163 3 29 chr13 7319230 7319536 -94553633 + AluJb SINE Alu 2 299 -13 1517 191 73 102 chr13 7319537 7319583 -94553586 - Charlie5 DNA MER1_type -1295 1329 1283 1666 172 10 10 chr13 7319583 7319886 -94553283 + AluJb SINE Alu 3 305 -7 1517 191 73 102 chr13 7319886 7320387 -94552782 - Charlie5 DNA MER1_type -1341 1283 798 800 205 0 13 chr13 7320387 7320538 -94552631 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 7320534 7320577 -94552592 - Tigger2 DNA MER2_type -253 2465 2423 * 1575 150 71 11 chr13 7320630 7320910 -94552259 + Tigger2 DNA MER2_type 2422 2718 0 2979 198 85 9 chr13 7320919 7321247 -94551922 - Charlie5 DNA MER1_type -1834 790 488 1728 168 118 28 chr13 7321247 7321610 -94551559 + MSTD LTR MaLR 1 396 0 2979 198 85 9 chr13 7321610 7321974 -94551195 - Charlie5 DNA MER1_type -2136 488 45 2149 101 7 20 chr13 7322089 7322387 -94550782 + AluSg SINE Alu 1 294 -16 789 278 74 20 chr13 7322402 7322859 -94550310 - L1ME LINE L1 -578 5592 5119 2089 117 10 3 chr13 7322882 7323181 -94549988 + AluSg SINE Alu 1 301 -9 282 264 41 66 chr13 7375104 7375225 -94497944 - L2 LINE L2 -5 3267 3150 2179 56 4 4 chr13 7376460 7376727 -94496442 - AluY SINE Alu -6 305 39 1847 172 52 8 chr13 7376896 7377262 -94495907 - MLT1B LTR MaLR -8 382 1 1920 149 3 3 chr13 7378219 7378501 -94494668 - AluSx SINE Alu -30 282 1 824 136 8 0 chr13 7379800 7379932 -94493237 - FLAM_C SINE Alu 0 133 1 426 253 69 90 chr13 7380002 7380235 -94492934 + MLT1K LTR MaLR 357 584 -4 1761 174 0 19 chr13 7381200 7381517 -94491652 - AluJo SINE Alu -1 311 1 192 277 50 34 chr13 7381718 7381837 -94491332 - L2 LINE L2 -1834 1480 1360 521 244 60 30 chr13 7381899 7382067 -94491102 - MLT1K LTR MaLR -4 584 412 32 0 0 23 chr13 7383653 7383667 -94489502 + AT_rich Low_complexity Low_complexity 1 14 -28 2796 25 0 10 chr13 7383667 7383981 -94489188 - AluY SINE Alu 0 311 1 32 0 0 23 chr13 7383981 7384009 -94489160 + AT_rich Low_complexity Low_complexity 14 42 0 4091 171 21 39 chr13 7384203 7384957 -94488212 - MER21B LTR ERV1 -22 841 101 1504 116 5 5 chr13 7384974 7385189 -94487980 - AluSp SINE Alu -6 307 93 8830 156 18 39 chr13 7385300 7386060 -94487109 - L1 LINE L1 -769 5377 4603 2179 110 21 0 chr13 7386060 7386350 -94486819 - AluSx SINE Alu -16 296 1 8830 156 18 39 chr13 7386350 7387301 -94485868 - L1 LINE L1 -1543 4603 3701 787 170 0 99 chr13 7387402 7387614 -94485555 + L1MA4 LINE L1 6110 6300 0 2252 92 7 26 chr13 7388003 7388308 -94484861 + AluSc SINE Alu 1 299 -10 10655 190 12 12 chr13 7388309 7389768 -94483401 + L1PB1 LINE L1 2927 4385 -1766 216 0 0 0 chr13 7389768 7389792 -94483377 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10655 190 12 12 chr13 7389792 7391549 -94481620 + L1PB1 LINE L1 4385 6151 0 295 170 0 4 chr13 7391658 7391716 -94481453 - FLAM_A SINE Alu -81 51 9 284 280 100 13 chr13 7392056 7392206 -94480963 - L2 LINE L2 -40 3273 3111 183 261 109 11 chr13 7392526 7392618 -94480551 + MIR SINE MIR 92 192 -70 2142 104 0 4 chr13 7392756 7393077 -94480092 - AluSc SINE Alu 0 320 1 1374 146 5 5 chr13 7393107 7393319 -94479850 - AluSx SINE Alu -100 212 1 1154 189 129 63 chr13 7393550 7393836 -94479333 - AluJo SINE Alu 0 312 8 726 227 164 54 chr13 7395330 7395665 -94477504 - MER93b LTR ERV1 0 373 2 3468 179 48 8 chr13 7395701 7396354 -94476815 + LTR58 LTR ERV1 1 679 0 2317 78 0 0 chr13 7397345 7397621 -94475548 + AluY SINE Alu 16 292 -15 297 0 0 0 chr13 7397621 7397654 -94475515 + (CA)n Simple_repeat Simple_repeat 2 34 0 258 212 45 15 chr13 7398033 7398099 -94475070 - L2 LINE L2 0 3313 3246 2324 98 3 0 chr13 7398121 7398416 -94474753 + AluSq SINE Alu 3 298 -15 21 0 0 0 chr13 7398566 7398587 -94474582 + AT_rich Low_complexity Low_complexity 1 21 0 1321 226 129 12 chr13 7399643 7400045 -94473124 - LTR2 LTR ERV1 0 449 1 228 389 87 0 chr13 7400096 7400222 -94472947 - L2 LINE L2 0 3272 3136 2108 166 5 27 chr13 7401307 7401498 -94471671 - MLT1A1 LTR MaLR 0 365 184 2660 108 14 0 chr13 7401498 7401868 -94471301 + THE1C LTR MaLR 1 375 0 2108 166 5 27 chr13 7401868 7402049 -94471120 - MLT1A1 LTR MaLR -181 184 1 830 283 94 11 chr13 7402112 7402270 -94470899 + L2 LINE L2 2920 3063 -250 288 0 0 0 chr13 7402270 7402302 -94470867 + (CA)n Simple_repeat Simple_repeat 2 33 0 830 283 94 11 chr13 7402302 7402503 -94470666 + L2 LINE L2 3063 3309 -4 258 274 266 0 chr13 7403794 7403907 -94469262 + L2 LINE L2 3126 3268 -4 477 304 47 16 chr13 7404117 7404308 -94468861 + MIR SINE MIR 65 261 -1 488 230 0 7 chr13 7404636 7404788 -94468381 + (CA)n Simple_repeat Simple_repeat 2 152 0 568 135 0 10 chr13 7404790 7404886 -94468283 + FRAM SINE Alu 71 165 -11 363 309 47 7 chr13 7405442 7405591 -94467578 + MIR SINE MIR 65 219 -43 920 264 60 23 chr13 7405900 7406263 -94466906 - L1ME2 LINE L1 -6 6158 5785 322 143 16 16 chr13 7407078 7407141 -94466028 + AluS SINE Alu 1 63 -238 1870 153 13 3 chr13 7407447 7407754 -94465415 - AluJb SINE Alu -2 310 1 2007 102 56 30 chr13 7407791 7408094 -94465075 - AluY SINE Alu 0 311 1 210 351 18 9 chr13 7408467 7408578 -94464591 - L2 LINE L2 -213 3059 2948 228 67 0 0 chr13 7408860 7408890 -94464279 + (TG)n Simple_repeat Simple_repeat 2 31 0 195 184 0 0 chr13 7408890 7408928 -94464241 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 189 0 0 0 chr13 7408928 7408949 -94464220 + (GA)n Simple_repeat Simple_repeat 2 22 0 1549 190 0 32 chr13 7408952 7409236 -94463933 - AluJo SINE Alu -37 275 1 1145 264 105 87 chr13 7409714 7410408 -94462761 + MER21B LTR ERV1 8 714 -149 2484 100 73 36 chr13 7411982 7412393 -94460776 - MSTC LTR MaLR 0 428 3 282 242 74 21 chr13 7412429 7412524 -94460645 - LTR16A1 LTR ERVL -179 278 179 1205 144 24 5 chr13 7412872 7413080 -94460089 + LTR49 LTR ERV1 1 212 -383 2181 152 8 0 chr13 7413080 7413436 -94459733 + L1MA5A LINE L1 5899 6257 -40 183 139 0 0 chr13 7415434 7415470 -94457699 + (CTG)n Simple_repeat Simple_repeat 1 36 0 205 271 0 0 chr13 7416638 7416686 -94456483 - L2 LINE L2 -4 3268 3221 221 211 88 0 chr13 7416885 7416942 -94456227 - MIR SINE MIR -109 153 92 2762 242 49 73 chr13 7417404 7418823 -94454346 + L1M1 LINE L1 18 2332 -5233 870 184 0 0 chr13 7419157 7419298 -94453871 + FRAM SINE Alu 10 150 -26 387 0 0 0 chr13 7419325 7419368 -94453801 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr13 7419367 7419390 -94453779 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 305 264 107 8 chr13 7420407 7420528 -94452641 - MIR3 SINE MIR -18 190 58 813 145 34 101 chr13 7420645 7420852 -94452317 - MER34C LTR ERV1 -33 552 360 619 164 10 0 chr13 7422036 7422140 -94451029 + FLAM_C SINE Alu 1 105 -38 3354 137 29 18 chr13 7422140 7422688 -94450481 - MER41C LTR ERV1 0 554 1 275 189 0 19 chr13 7422695 7422748 -94450421 + MER34B LTR ERV1 514 565 0 2557 212 18 21 chr13 7423161 7423765 -94449404 + L1MB7 LINE L1 4448 5049 -1097 246 157 118 0 chr13 7423764 7423815 -94449354 - L1M4 LINE L1 -1021 5125 5069 * 2696 194 50 6 chr13 7423827 7424595 -94448574 + L1MB7 LINE L1 5069 5904 -280 * 5649 113 14 3 chr13 7424592 7425484 -94447685 + L1MA3 LINE L1 5186 6087 -218 2331 95 10 0 chr13 7426957 7427261 -94445908 - AluSg SINE Alu -3 307 1 200 216 21 31 chr13 7427483 7427580 -94445589 + (TA)n Simple_repeat Simple_repeat 2 97 0 3188 127 6 27 chr13 7428030 7428543 -94444626 - L1MC1 LINE L1 -457 5876 5375 1103 165 0 6 chr13 7428544 7428720 -94444449 - AluJo SINE Alu -137 175 1 348 318 85 31 chr13 7428884 7429013 -94444156 - L2 LINE L2 0 3272 3137 419 176 0 0 chr13 7430529 7430597 -94442572 - AluJ/FLAM SINE Alu -243 69 2 562 248 9 0 chr13 7430655 7430764 -94442405 - MER81 DNA DNA 0 114 5 1932 113 28 10 chr13 7431087 7431378 -94441791 + AluSx SINE Alu 1 296 -16 264 100 0 0 chr13 7431987 7432027 -94441142 + (A)n Simple_repeat Simple_repeat 1 40 0 554 197 171 0 chr13 7432437 7432589 -94440580 - MER45A DNA AcHobo 0 178 1 360 257 208 20 chr13 7434321 7434523 -94438646 + L2 LINE L2 2549 2788 -526 2202 118 7 0 chr13 7435164 7435469 -94437700 + AluSx SINE Alu 1 307 -5 2364 83 3 26 chr13 7435493 7435806 -94437363 + AluY SINE Alu 1 306 -5 501 62 0 0 chr13 7435808 7435873 -94437296 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 1812 172 0 17 chr13 7437358 7437654 -94435515 + AluJo SINE Alu 1 291 -21 290 297 88 88 chr13 7437768 7438064 -94435105 + L3 LINE CR1 514 809 -768 296 263 70 19 chr13 7438184 7438378 -94434791 + L3 LINE CR1 1022 1274 -303 905 265 70 42 chr13 7438437 7438959 -94434210 + MLT1H1 LTR MaLR 10 555 0 2046 158 0 0 chr13 7438982 7439292 -94433877 + AluSx SINE Alu 1 310 -2 606 235 82 6 chr13 7439320 7439490 -94433679 + MIR SINE MIR 64 246 -16 211 340 98 13 chr13 7439503 7439656 -94433513 + L3 LINE CR1 1317 1482 -95 613 268 137 38 chr13 7441737 7442084 -94431085 + MLT1J1 LTR MaLR 1 369 -77 1978 199 3 8 chr13 7442084 7442451 -94430718 + MLT1A1 LTR MaLR 1 365 0 613 268 137 38 chr13 7442451 7442533 -94430636 + MLT1J1 LTR MaLR 369 441 -5 1572 202 21 12 chr13 7443358 7443685 -94429484 + MER70A LTR ERVL 1 330 -142 1234 192 41 50 chr13 7445218 7445535 -94427634 + MLT1C LTR MaLR 1 314 -153 1755 167 17 7 chr13 7446651 7447042 -94426127 + AluSx SINE Alu 2 395 0 505 161 39 8 chr13 7447164 7447294 -94425875 + GA-rich Low_complexity Low_complexity 1 134 0 382 36 36 0 chr13 7447359 7447415 -94425754 + (ATG)n Simple_repeat Simple_repeat 3 60 0 297 89 0 0 chr13 7448450 7448495 -94424674 + (TG)n Simple_repeat Simple_repeat 2 46 0 225 224 37 19 chr13 7448989 7449096 -94424073 + (TA)n Simple_repeat Simple_repeat 2 110 0 204 128 0 26 chr13 7450777 7450816 -94422353 + (CGG)n Simple_repeat Simple_repeat 3 40 0 24 32 0 0 chr13 7451045 7451076 -94422093 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 7451422 7451444 -94421725 + GC_rich Low_complexity Low_complexity 1 22 0 200 188 0 0 chr13 7452873 7452905 -94420264 + polypyrimidine Low_complexity Low_complexity 1 32 0 201 39 0 0 chr13 7452910 7452936 -94420233 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 28 48 0 0 chr13 7455022 7455064 -94418105 + AT_rich Low_complexity Low_complexity 1 42 0 435 226 61 0 chr13 7457282 7457397 -94415772 - MIR SINE MIR 0 262 141 224 276 0 0 chr13 7457418 7457476 -94415693 + CT-rich Low_complexity Low_complexity 2 59 0 2650 166 6 32 chr13 7457876 7457922 -94415247 - L1MB1 LINE L1 0 6168 6122 2301 100 7 3 chr13 7457922 7458221 -94414948 - AluSx SINE Alu -10 302 3 2650 166 6 32 chr13 7458221 7458680 -94414489 - L1MB1 LINE L1 -46 6122 5676 2150 105 7 0 chr13 7459485 7459770 -94413399 - AluSx SINE Alu -25 287 1 2085 124 0 10 chr13 7460269 7460567 -94412602 - AluSx SINE Alu -17 295 1 2400 145 17 2 chr13 7460570 7460978 -94412191 - L1MB3 LINE L1 -45 6138 5725 911 302 114 16 chr13 7460975 7461459 -94411710 - L1MC4a LINE L1 -1982 5826 5296 * 1191 242 11 0 chr13 7461990 7462254 -94410915 + MLT1A1 LTR MaLR 2 268 -97 1712 139 14 75 chr13 7462254 7462622 -94410547 - MER4A LTR ERV1 0 664 261 597 89 89 0 chr13 7462622 7462712 -94410457 - MER4A LTR ERV1 -566 98 1 709 121 0 0 chr13 7462712 7462811 -94410358 + MLT1A1 LTR MaLR 265 363 -2 1067 197 19 57 chr13 7462912 7463201 -94409968 - L1P5 LINE L1 -430 5724 5441 21 36 0 0 chr13 7463842 7463870 -94409299 + AT_rich Low_complexity Low_complexity 1 28 0 2176 71 46 4 chr13 7463874 7464155 -94409014 - AluY SINE Alu -18 293 1 304 285 122 14 chr13 7464255 7464356 -94408813 + L1MC/D LINE L1 4076 4165 -1981 2035 214 13 5 chr13 7464356 7464749 -94408420 - MSTD LTR MaLR 0 396 1 304 285 122 14 chr13 7464749 7464868 -94408301 + L1MC/D LINE L1 4165 4320 -1826 2142 125 10 0 chr13 7464872 7465168 -94408001 + AluSx SINE Alu 1 299 -13 1860 287 95 34 chr13 7465275 7465809 -94407360 + L1M3c LINE L1 1046 1546 -4850 1939 170 0 0 chr13 7465809 7466098 -94407071 + AluJb SINE Alu 1 289 -23 1860 287 95 34 chr13 7466098 7466193 -94406976 + L1M3c LINE L1 1546 1634 -4762 2547 159 11 23 chr13 7466193 7466632 -94406537 - Tigger2a DNA MER2_type 0 434 1 1860 287 95 34 chr13 7466632 7467087 -94406082 + L1M3c LINE L1 1634 2060 -4336 2331 108 0 0 chr13 7467087 7467384 -94405785 - AluSx SINE Alu -15 297 1 1860 287 95 34 chr13 7467384 7467724 -94405445 + L1M3c LINE L1 2060 2519 -3877 5763 244 81 30 chr13 7467725 7468152 -94405017 + L1ME1 LINE L1 3100 3504 -2662 2262 90 0 50 chr13 7468152 7468473 -94404696 - AluSg SINE Alu -5 305 1 5763 244 81 30 chr13 7468473 7469545 -94403624 + L1ME1 LINE L1 3504 4519 -1647 2231 119 0 6 chr13 7469545 7469878 -94403291 + AluSg SINE Alu 1 310 0 5763 244 81 30 chr13 7469878 7471222 -94401947 + L1ME1 LINE L1 4519 6103 -63 2637 55 0 0 chr13 7471222 7471532 -94401637 - AluY SINE Alu -1 310 1 5763 244 81 30 chr13 7471532 7471600 -94401569 + L1ME1 LINE L1 6103 6166 0 750 292 97 39 chr13 7471688 7472174 -94400995 + LTR33 LTR ERVL 8 521 0 228 312 18 9 chr13 7472264 7472373 -94400796 + L1P LINE L1 4482 4591 -1555 247 286 98 31 chr13 7472547 7472771 -94400398 + L1MC/D LINE L1 4812 5050 -1096 1855 167 74 24 chr13 7472800 7473177 -94399992 - MSTD LTR MaLR 0 396 1 1136 195 80 58 chr13 7473200 7473513 -94399656 + MER2 DNA MER2_type 1 320 -25 1323 264 47 10 chr13 7473619 7474028 -94399141 + L1MC/D LINE L1 5270 5691 -747 362 245 64 107 chr13 7474645 7474878 -94398291 + MER65-int LTR ERV1 81 303 -4568 238 243 49 60 chr13 7475059 7475244 -94397925 - MER54A LTR ERVL -618 283 101 272 198 0 88 chr13 7475244 7475335 -94397834 + MER65-int LTR ERV1 656 738 -4133 1785 179 3 7 chr13 7476347 7476643 -94396526 + AluJo SINE Alu 1 295 -17 5134 112 11 3 chr13 7476756 7477509 -94395660 - L1PA13 LINE L1 0 6163 5405 1707 178 7 13 chr13 7478887 7479185 -94393984 + AluJo SINE Alu 1 296 -16 2153 102 0 7 chr13 7480329 7480638 -94392531 + AluSx SINE Alu 1 307 0 1125 168 0 5 chr13 7480649 7480839 -94392330 + L1PB4 LINE L1 5966 6154 -2 2143 100 42 0 chr13 7481230 7481519 -94391650 + AluSx SINE Alu 1 301 -11 6223 85 11 6 chr13 7482058 7482905 -94390264 - L1PA11 LINE L1 -1 6173 5323 1886 122 16 56 chr13 7483411 7483715 -94389454 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr13 7483715 7483736 -94389433 + AT_rich Low_complexity Low_complexity 1 21 0 2051 131 0 10 chr13 7484330 7484636 -94388533 + AluSx SINE Alu 1 303 -9 2443 85 7 3 chr13 7484892 7485199 -94387970 + AluSq SINE Alu 1 308 -5 189 107 0 0 chr13 7486511 7486539 -94386630 + (GGAGAA)n Simple_repeat Simple_repeat 3 30 0 45 0 0 0 chr13 7486918 7486963 -94386206 + AT_rich Low_complexity Low_complexity 1 45 0 1920 116 49 0 chr13 7486972 7487239 -94385930 + AluSx SINE Alu 1 280 -32 204 97 0 0 chr13 7487239 7487270 -94385899 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 243 222 0 0 chr13 7487319 7487373 -94385796 + L2 LINE L2 3213 3266 -6 2533 132 89 22 chr13 7487980 7488428 -94384741 + LTR64 LTR ERVK 1 478 -80 927 118 0 29 chr13 7488451 7488587 -94384582 - FLAM_C SINE Alu -1 132 1 1841 171 0 0 chr13 7488628 7488914 -94384255 - AluJb SINE Alu -26 286 1 9122 161 72 14 chr13 7489099 7491561 -94381608 + L1PBa LINE L1 647 3345 -3517 442 241 61 30 chr13 7491749 7492002 -94381167 + MLT1L LTR MaLR 312 611 -4 801 261 31 52 chr13 7492765 7493152 -94380017 - L1MC5 LINE L1 -36 7925 7547 1325 219 28 100 chr13 7493204 7493390 -94379779 - L1MC5 LINE L1 -729 7232 7034 1974 110 7 0 chr13 7493390 7493703 -94379466 + AluSx SINE Alu 1 315 0 1325 219 28 100 chr13 7493703 7494095 -94379074 - L1MC5 LINE L1 -927 7034 6695 410 275 53 8 chr13 7494235 7494366 -94378803 + MIR SINE MIR 67 203 -59 23 0 0 0 chr13 7495213 7495236 -94377933 + AT_rich Low_complexity Low_complexity 1 23 0 233 100 0 0 chr13 7495574 7495604 -94377565 - MLT2D LTR ERVL -5 510 481 1565 158 0 19 chr13 7495674 7495934 -94377235 + AluJb SINE Alu 1 255 -57 341 170 0 0 chr13 7495937 7495990 -94377179 + AluJb SINE Alu 234 286 -16 1711 148 98 0 chr13 7496012 7496330 -94376839 - MLT2D LTR ERVL -65 349 1 1748 149 10 7 chr13 7496764 7497066 -94376103 + L1MC1 LINE L1 6030 6332 -1 22 0 0 0 chr13 7497106 7497128 -94376041 + AT_rich Low_complexity Low_complexity 1 22 0 2052 111 13 10 chr13 7497758 7498065 -94375104 - AluSx SINE Alu -4 308 1 517 253 141 72 chr13 7498620 7499131 -94374038 - MLT1H LTR MaLR 0 595 1 1339 153 48 34 chr13 7499410 7499704 -94373465 + L1MB7 LINE L1 5887 6184 0 520 243 181 35 chr13 7500263 7500489 -94372680 + MLT1L LTR MaLR 8 266 -349 2349 253 40 43 chr13 7500974 7501657 -94371512 - L1ME3 LINE L1 -41 6121 5441 2136 122 3 0 chr13 7501657 7501968 -94371201 - AluSx SINE Alu 0 312 1 2349 253 40 43 chr13 7501968 7502462 -94370707 - L1ME3 LINE L1 -721 5441 4947 1355 239 46 46 chr13 7502488 7502687 -94370482 - L1ME3 LINE L1 -1279 4867 4669 2218 110 0 0 chr13 7502687 7502997 -94370172 - AluSx SINE Alu -2 310 1 1355 239 46 46 chr13 7502997 7503295 -94369874 - L1ME3 LINE L1 -1476 4670 4370 1696 225 75 58 chr13 7503336 7503445 -94369724 - L1ME1 LINE L1 -5 6161 6055 1759 111 12 0 chr13 7503445 7503713 -94369456 + AluSx SINE Alu 38 308 0 1696 225 75 58 chr13 7503713 7504188 -94368981 - L1ME1 LINE L1 -111 6055 5566 237 303 17 17 chr13 7504193 7504312 -94368857 - L1ME3 LINE L1 -1755 4391 4273 700 240 98 62 chr13 7504554 7504891 -94368278 - MLT1L LTR MaLR -266 349 1 1256 162 81 0 chr13 7506957 7507191 -94365978 + AluSg SINE Alu 1 253 -57 363 132 0 0 chr13 7507746 7507814 -94365355 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 1562 168 81 0 chr13 7507831 7508116 -94365053 - AluJo SINE Alu -4 308 1 2158 100 0 0 chr13 7508575 7508864 -94364305 - AluSg SINE Alu -16 294 6 2079 74 14 18 chr13 7509754 7510039 -94363130 + AluY SINE Alu 1 284 -27 391 165 70 52 chr13 7510141 7510256 -94362913 + L1PA16 LINE L1 6050 6166 0 2513 43 0 0 chr13 7510550 7510851 -94362318 - AluY SINE Alu -10 301 1 2312 92 0 0 chr13 7511042 7511346 -94361823 - AluSq SINE Alu -9 304 1 235 397 7 0 chr13 7511395 7511531 -94361638 - L2 LINE L2 -946 2368 2232 844 257 141 27 chr13 7511547 7511959 -94361210 - MLT1C LTR MaLR -8 459 1 270 56 0 0 chr13 7512702 7512738 -94360431 + (TA)n Simple_repeat Simple_repeat 2 37 0 270 360 0 0 chr13 7514952 7515041 -94358128 + MER5A DNA MER1_type 18 106 -83 852 220 47 19 chr13 7515336 7515550 -94357619 - MIR SINE MIR 0 262 43 1206 164 136 82 chr13 7515633 7515933 -94357236 + MSTD LTR MaLR 1 320 -76 1886 190 64 11 chr13 7515933 7516307 -94356862 - MSTD LTR MaLR 0 396 3 1206 164 136 82 chr13 7516307 7516323 -94356846 + MSTD LTR MaLR 320 334 -62 290 57 0 0 chr13 7516323 7516388 -94356781 + Alu SINE Alu 247 304 0 25 31 0 0 chr13 7516388 7516420 -94356749 + AT_rich Low_complexity Low_complexity 1 32 0 283 267 91 3 chr13 7516587 7516691 -94356478 + Charlie8 DNA MER1_type 2 79 -2338 186 322 17 43 chr13 7516793 7516853 -94356316 + L2 LINE L2 3123 3180 -92 2240 104 3 0 chr13 7516853 7517162 -94356007 + AluSp SINE Alu 1 310 -3 186 322 17 43 chr13 7517162 7517216 -94355953 + L2 LINE L2 3180 3234 -38 700 282 25 0 chr13 7518116 7518279 -94354890 + MIR SINE MIR 47 213 -49 1960 149 0 0 chr13 7519692 7520000 -94353169 + AluSx SINE Alu 1 308 -4 1455 167 0 4 chr13 7520202 7520453 -94352716 - AluSx SINE Alu -13 299 50 211 196 0 39 chr13 7520824 7520875 -94352294 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 220 347 0 13 chr13 7520902 7520977 -94352192 + L2 LINE L2 3163 3236 -36 2189 106 0 3 chr13 7521001 7521304 -94351865 - AluSx SINE Alu -10 302 1 261 0 0 0 chr13 7521353 7521382 -94351787 + (CA)n Simple_repeat Simple_repeat 2 30 0 2305 58 3 0 chr13 7522108 7522399 -94350770 + AluY SINE Alu 20 311 0 565 231 37 15 chr13 7522666 7522800 -94350369 + MIR SINE MIR 49 185 -77 389 273 116 8 chr13 7523824 7523945 -94349224 + MIR SINE MIR 50 183 -79 382 216 27 99 chr13 7524191 7524302 -94348867 + MER20 DNA MER1_type 1 103 -116 218 274 68 27 chr13 7525208 7525281 -94347888 + MIR SINE MIR 127 202 -60 1972 103 0 62 chr13 7525309 7525630 -94347539 + AluSx SINE Alu 1 301 -11 298 350 13 38 chr13 7526068 7526225 -94346944 + MIR SINE MIR 50 202 -60 197 307 71 24 chr13 7526327 7526454 -94346715 + MIR SINE MIR 60 192 -70 972 165 6 6 chr13 7526644 7526820 -94346349 - FRAM SINE Alu 0 176 1 689 137 24 8 chr13 7528453 7528577 -94344592 + MER31B LTR ERV1 1 126 -340 * 718 133 147 7 chr13 7528554 7528704 -94344465 + MER31B LTR ERV1 243 413 -53 1970 153 80 28 chr13 7528714 7529098 -94344071 + MSTB1 LTR MaLR 7 410 -22 1680 95 4 9 chr13 7529098 7529329 -94343840 - MER30 DNA MER1_type 0 230 1 320 155 28 14 chr13 7529361 7529432 -94343737 + MER31B LTR ERV1 395 466 0 466 235 120 54 chr13 7529440 7529933 -94343236 - MLT1H1 LTR MaLR -29 566 4 1844 117 32 14 chr13 7529987 7530290 -94342879 + AluSx SINE Alu 5 312 0 510 198 18 0 chr13 7530392 7530503 -94342666 + L1MD3 LINE L1 6919 7031 -964 944 162 65 142 chr13 7530615 7530967 -94342202 + MER51C LTR ERV1 326 640 0 299 235 0 0 chr13 7530980 7531048 -94342121 + L1MC3 LINE L1 7029 7096 -689 325 265 31 10 chr13 7531049 7531147 -94342022 + MLT1F1 LTR MaLR 35 134 -433 2463 147 46 31 chr13 7531150 7531559 -94341610 + L1MC3 LINE L1 7205 7623 -162 2463 63 0 0 chr13 7531559 7531861 -94341308 + AluY SINE Alu 1 302 -9 2463 147 46 31 chr13 7531861 7531906 -94341263 + L1MC3 LINE L1 7623 7666 -119 1359 189 71 53 chr13 7531930 7532135 -94341034 - MER2 DNA MER2_type 0 344 129 1965 125 0 10 chr13 7532135 7532440 -94340729 + AluSx SINE Alu 11 312 0 1359 189 71 53 chr13 7532440 7532572 -94340597 - MER2 DNA MER2_type -215 129 1 219 146 0 0 chr13 7582829 7582870 -94290299 + (TA)n Simple_repeat Simple_repeat 1 41 0 1843 139 17 24 chr13 7582873 7583168 -94290001 - AluSc SINE Alu -16 293 1 379 287 72 34 chr13 7583181 7583418 -94289751 - L1M4 LINE L1 -2130 4016 3771 638 279 54 38 chr13 7583447 7583874 -94289295 - L1M4 LINE L1 -2899 3247 2814 304 258 112 0 chr13 7584317 7584406 -94288763 - L1M4 LINE L1 -3319 2827 2729 2244 124 0 0 chr13 7584407 7584714 -94288455 - AluSx SINE Alu -5 307 1 1208 194 41 32 chr13 7584714 7585059 -94288110 - L1M4 LINE L1 -1100 5046 4699 1040 241 119 17 chr13 7585190 7585534 -94287635 + MLT1G1 LTR MaLR 3 381 -214 2480 85 0 3 chr13 7585766 7586072 -94287097 + AluSc SINE Alu 1 305 -4 1872 176 0 0 chr13 7586372 7586661 -94286508 + AluJb SINE Alu 4 292 -20 499 314 54 46 chr13 7586737 7586998 -94286171 + L3b LINE CR1 1190 1452 -131 188 167 0 24 chr13 7587149 7587191 -94285978 + L2 LINE L2 1698 1738 -1576 195 42 0 0 chr13 7588449 7588473 -94284696 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 714 116 0 0 chr13 7588477 7588572 -94284597 - AluSg/x SINE Alu -35 277 183 2460 87 6 0 chr13 7589012 7589323 -94283846 + AluSq SINE Alu 1 313 0 185 262 0 0 chr13 7589645 7589687 -94283482 + MIR SINE MIR 85 126 -136 513 136 0 0 chr13 7589698 7589801 -94283368 + (TG)n Simple_repeat Simple_repeat 1 103 0 25 75 0 0 chr13 7590290 7590343 -94282826 + GC_rich Low_complexity Low_complexity 1 53 0 219 175 0 35 chr13 7590631 7590688 -94282481 + (CGGGG)n Simple_repeat Simple_repeat 4 58 0 339 203 0 0 chr13 7591199 7591273 -94281896 + (CA)n Simple_repeat Simple_repeat 2 75 0 989 284 95 14 chr13 7591762 7592205 -94280964 - L2 LINE L2 -612 2702 2224 636 190 41 24 chr13 7592205 7592376 -94280793 + MER45A DNA AcHobo 1 174 -4 1110 242 85 20 chr13 7592400 7592835 -94280334 - L2 LINE L2 -1154 2160 1700 309 262 83 14 chr13 7592848 7593057 -94280112 - L2 LINE L2 -2761 553 240 355 230 110 10 chr13 7593541 7593641 -94279528 - L2 LINE L2 -13 3300 3191 222 273 0 0 chr13 7593877 7593954 -94279215 + (TTTA)n Simple_repeat Simple_repeat 3 79 0 1329 91 6 6 chr13 7594184 7594360 -94278809 - AluSc SINE Alu -124 185 10 253 295 103 0 chr13 7594555 7594633 -94278536 - MIR3 SINE MIR -15 193 108 1754 161 33 4 chr13 7596016 7596325 -94276844 + AluSx SINE Alu 1 317 0 1921 143 20 7 chr13 7596335 7596629 -94276540 + AluJo SINE Alu 1 298 -14 217 235 39 0 chr13 7598576 7598627 -94274542 - L2 LINE L2 -680 2634 2582 1240 197 55 3 chr13 7598883 7599173 -94273996 + MER33 DNA MER1_type 11 315 -9 211 272 80 74 chr13 7599218 7599380 -94273789 - MIR3 SINE MIR -11 197 35 4769 132 13 9 chr13 7600497 7601250 -94271919 - L1MC1 LINE L1 -246 6087 5332 2534 73 0 0 chr13 7601250 7601553 -94271616 - AluY SINE Alu -8 303 1 1770 88 0 0 chr13 7601553 7601770 -94271399 - AluSc SINE Alu -20 289 73 978 69 0 0 chr13 7601772 7601888 -94271281 - AluSc SINE Alu -180 129 14 983 204 13 34 chr13 7601889 7602124 -94271045 - L1MC1 LINE L1 -816 5330 5101 248 269 78 91 chr13 7602494 7603306 -94269863 - L1MDa LINE L1 -856 2045 1285 541 304 57 0 chr13 7603802 7603996 -94269173 + MIR SINE MIR 37 241 -21 24 77 0 0 chr13 7604004 7604056 -94269113 + AT_rich Low_complexity Low_complexity 1 52 0 1290 178 5 5 chr13 7604192 7604405 -94268764 - AluJb SINE Alu -13 299 87 2136 104 10 13 chr13 7604415 7604714 -94268455 - AluSx SINE Alu -14 298 1 2307 57 0 4 chr13 7605213 7605523 -94267646 + AluY SINE Alu 1 309 0 2229 115 3 0 chr13 7606280 7606575 -94266594 + AluSx SINE Alu 1 296 -16 313 134 15 15 chr13 7606662 7606729 -94266440 + GA-rich Low_complexity Low_complexity 3 69 0 1947 191 70 27 chr13 7606817 7607257 -94265912 - LTR2B LTR ERV1 0 490 32 186 333 14 92 chr13 7608164 7608305 -94264864 - L2 LINE L2 -10 3262 3133 2112 117 3 10 chr13 7608473 7608792 -94264377 - AluSx SINE Alu 0 312 1 1516 189 42 95 chr13 7608820 7609146 -94264023 - L1ME1 LINE L1 -6 6160 5861 2280 102 17 0 chr13 7609146 7609439 -94263730 + AluSx SINE Alu 1 298 -14 1516 189 42 95 chr13 7609439 7609545 -94263624 - L1ME1 LINE L1 -305 5861 5751 200 200 18 0 chr13 7609826 7609881 -94263288 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 197 305 86 47 chr13 7609895 7610023 -94263146 - L2 LINE L2 -2 3270 3138 3428 121 74 3 chr13 7610723 7611293 -94261876 + LTR24C LTR ERV1 1 610 -25 830 184 0 0 chr13 7611293 7611434 -94261735 + FLAM_A SINE Alu 1 141 -1 311 53 0 0 chr13 7611436 7611474 -94261695 + LTR24C LTR ERV1 598 635 0 1545 167 108 7 chr13 7611632 7611901 -94261268 - AluJo SINE Alu -16 296 1 2378 106 0 0 chr13 7611912 7612214 -94260955 - AluSx SINE Alu -10 302 1 207 185 19 37 chr13 7612899 7612953 -94260216 + A-rich Low_complexity Low_complexity 4 56 0 1091 196 47 120 chr13 7613113 7613688 -94259481 + MER34B LTR ERV1 1 521 -21 3980 124 38 11 chr13 7613872 7614092 -94259077 - MER39B LTR ERV1 0 653 440 1468 189 0 4 chr13 7614092 7614335 -94258834 - AluJo SINE Alu -70 242 1 2207 114 7 0 chr13 7614342 7614640 -94258529 - AluSc SINE Alu -9 300 1 3980 124 38 11 chr13 7614640 7615046 -94258123 - MER39B LTR ERV1 -218 435 2 849 192 33 33 chr13 7615329 7615511 -94257658 - MER70A LTR ERVL -16 456 275 976 178 31 21 chr13 7615557 7615748 -94257421 - MER70B LTR ERVL -385 193 1 6007 118 16 3 chr13 7616112 7617004 -94256165 - MER4D LTR ERV1 0 903 1 198 256 178 11 chr13 7617054 7617144 -94256025 + L2 LINE L2 3206 3310 -3 896 199 21 31 chr13 7617669 7617860 -94255309 - MER5A DNA MER1_type 0 189 1 2759 19 0 13 chr13 7617890 7618200 -94254969 - AluYa5 SINE Alu -5 306 1 741 202 0 11 chr13 7618205 7618469 -94254700 + CT-rich Low_complexity Low_complexity 1 261 0 1446 155 4 13 chr13 7618482 7618721 -94254448 - AluJo SINE Alu -73 239 3 1150 132 20 0 chr13 7618870 7619067 -94254102 - L1MA4A LINE L1 0 6303 6103 1413 142 18 0 chr13 7620150 7620369 -94252800 - MER44D DNA MER2_type -14 591 314 808 209 14 0 chr13 7620369 7620517 -94252652 - FRAM SINE Alu -26 150 1 1822 189 12 16 chr13 7620518 7620840 -94252329 - MER44D DNA MER2_type -377 328 8 1355 214 16 43 chr13 7621162 7621281 -94251888 + MLT1A1 LTR MaLR 53 174 -191 1719 207 8 40 chr13 7621281 7621658 -94251511 - MLT1A1 LTR MaLR 0 365 1 1355 214 16 43 chr13 7621658 7621860 -94251309 + MLT1A1 LTR MaLR 174 365 0 530 367 96 0 chr13 7622472 7622712 -94250457 - L2 LINE L2 0 3272 3010 375 313 151 20 chr13 7623040 7623771 -94249398 - L2 LINE L2 -731 2583 1758 261 83 0 0 chr13 7624450 7624486 -94248683 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2215 156 85 16 chr13 7624584 7625007 -94248162 - LTR47A LTR ERVL 0 452 1 213 200 21 116 chr13 7625045 7625140 -94248029 - L2 LINE L2 -181 3091 3006 1303 62 0 0 chr13 7626416 7626577 -94246592 + L1PA8 LINE L1 5998 6158 -14 2228 96 3 3 chr13 7626611 7626902 -94246267 + AluSc SINE Alu 1 291 -18 180 200 0 0 chr13 7628440 7628485 -94244684 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1148 129 0 0 chr13 7628512 7628667 -94244502 - AluSq SINE Alu -158 155 1 700 211 45 35 chr13 7628667 7628866 -94244303 - L1M4 LINE L1 -1100 5046 4846 1713 229 98 25 chr13 7631560 7632080 -94241089 + MER74A LTR ERVL 1 558 0 1622 158 44 11 chr13 7632345 7632618 -94240551 + AluJb SINE Alu 11 292 -20 190 286 66 33 chr13 7633673 7633764 -94239405 - MIR SINE MIR -119 143 50 370 250 318 5 chr13 7634310 7634502 -94238667 + MIR SINE MIR 8 259 -3 2101 79 3 38 chr13 7635226 7635541 -94237628 - AluY SINE Alu 0 305 1 1623 172 0 29 chr13 7637453 7637761 -94235408 + AluJo SINE Alu 9 307 -5 194 354 25 0 chr13 7640486 7640565 -94232604 - MIR3 SINE MIR -9 199 119 363 270 40 62 chr13 7640700 7640856 -94232313 - MER97c DNA MER1_type? -3 1087 936 2184 123 3 0 chr13 7640856 7641156 -94232013 + AluSx SINE Alu 1 301 -11 363 270 40 62 chr13 7641156 7641225 -94231944 - MER97c DNA MER1_type? -154 936 867 1216 209 120 9 chr13 7641335 7641684 -94231485 - MER97b DNA MER1_type? -194 859 472 759 176 7 7 chr13 7641685 7641821 -94231348 + AluJo SINE Alu 2 137 -175 491 279 54 44 chr13 7641835 7642039 -94231130 - MER97b DNA MER1_type? -574 479 274 1081 222 79 29 chr13 7642180 7642492 -94230677 + AluJo SINE Alu 14 312 0 395 216 237 0 chr13 7642561 7642658 -94230511 - MER97b DNA MER1_type? -907 146 27 244 233 55 27 chr13 7642684 7642757 -94230412 + MIR SINE MIR 73 147 -115 1498 152 144 0 chr13 7644494 7644750 -94228419 - AluSx SINE Alu -17 295 3 1292 174 20 4 chr13 7644807 7645054 -94228115 + L1MB2 LINE L1 5921 6171 0 236 353 58 13 chr13 7645134 7645290 -94227879 - MIR SINE MIR -44 218 56 198 103 0 0 chr13 7645352 7645381 -94227788 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 263 299 62 0 chr13 7645664 7645761 -94227408 - MIR SINE MIR -9 253 151 1821 151 3 14 chr13 7646236 7646528 -94226641 - AluJb SINE Alu -23 289 1 2067 122 7 7 chr13 7648395 7648690 -94224479 + AluSx SINE Alu 2 296 -16 198 0 0 0 chr13 7648694 7648716 -94224453 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 877 157 8 0 chr13 7649456 7649590 -94223579 - AluJo SINE Alu -175 137 3 2238 114 16 50 chr13 7650242 7650619 -94222550 - THE1B LTR MaLR 0 364 1 189 262 8 71 chr13 7650650 7650776 -94222393 + L2 LINE L2 2905 3022 -250 295 268 143 0 chr13 7651050 7651162 -94222007 + Charlie7 DNA MER1_type 56 183 -2429 1487 154 41 110 chr13 7651205 7651595 -94221574 + MLT1A2 LTR MaLR 1 363 -11 421 278 42 0 chr13 7651602 7651746 -94221423 + Charlie7 DNA MER1_type 254 403 -2209 291 297 79 7 chr13 7651755 7651933 -94221236 - MLT1J LTR MaLR -241 270 43 7411 58 8 38 chr13 7652009 7653718 -94219451 + SVA Other Other 1 1383 -3 713 266 35 31 chr13 7653719 7654008 -94219161 + Charlie7 DNA MER1_type 400 689 -1923 277 174 64 92 chr13 7654002 7654065 -94219104 + Charlie7 DNA MER1_type 2507 2567 -45 * 2182 93 21 3 chr13 7654065 7654355 -94218814 + AluSc SINE Alu 1 295 -14 277 174 64 92 chr13 7654355 7654400 -94218769 + Charlie7 DNA MER1_type 2567 2612 0 2318 101 0 0 chr13 7655260 7655556 -94217613 - AluSq SINE Alu -17 296 1 1183 210 47 5 chr13 7655559 7655855 -94217314 - L1MD3 LINE L1 -15 7967 7481 2021 130 0 13 chr13 7656622 7656921 -94216248 + AluSx SINE Alu 2 296 -16 5712 116 9 33 chr13 7657181 7658075 -94215094 + L1PA14 LINE L1 5144 6012 -149 1978 97 38 56 chr13 7658075 7658363 -94214806 + AluSx SINE Alu 1 283 -29 5712 116 9 33 chr13 7658363 7658510 -94214659 + L1PA14 LINE L1 6012 6161 0 2528 75 0 3 chr13 7658624 7658931 -94214238 - AluY SINE Alu -5 306 1 21 36 0 0 chr13 7659355 7659383 -94213786 + AT_rich Low_complexity Low_complexity 1 28 0 1088 205 31 5 chr13 7659444 7659668 -94213501 + L1MB8 LINE L1 5910 6139 -39 26 64 0 0 chr13 7660576 7660623 -94212546 + AT_rich Low_complexity Low_complexity 1 47 0 2268 123 0 0 chr13 7660799 7661100 -94212069 - AluSx SINE Alu -11 301 1 2153 107 28 0 chr13 7661569 7661858 -94211311 + AluSx SINE Alu 1 297 -15 3349 151 53 67 chr13 7662137 7662839 -94210330 - L1MB7 LINE L1 -60 6124 5433 365 323 0 0 chr13 7663384 7663483 -94209686 + MIR SINE MIR 37 135 -127 26 30 0 0 chr13 7664302 7664335 -94208834 + GC_rich Low_complexity Low_complexity 1 33 0 201 108 0 0 chr13 7664418 7664455 -94208714 + (CCCCCG)n Simple_repeat Simple_repeat 3 39 0 2352 48 10 3 chr13 7665361 7665655 -94207514 + AluY SINE Alu 1 296 -15 841 125 0 8 chr13 7667287 7667407 -94205762 + FLAM_C SINE Alu 1 119 -24 956 79 0 14 chr13 7667408 7667548 -94205621 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 295 243 54 72 chr13 7668294 7668405 -94204764 + L2 LINE L2 3205 3313 0 189 0 0 0 chr13 7668744 7668765 -94204404 + (T)n Simple_repeat Simple_repeat 1 21 0 23 68 0 0 chr13 7669762 7669806 -94203363 + AT_rich Low_complexity Low_complexity 1 44 0 1218 262 85 101 chr13 7670290 7671011 -94202158 + MER21B LTR ERV1 6 714 -149 224 232 36 0 chr13 7671165 7671221 -94201948 + MIR SINE MIR 85 142 -66 451 213 21 0 chr13 7671240 7671334 -94201835 - MER58C DNA MER1_type 0 215 120 309 151 0 0 chr13 7671334 7671387 -94201782 + CT-rich Low_complexity Low_complexity 4 56 0 2160 114 4 0 chr13 7672980 7673294 -94199875 - AluSx SINE Alu 0 315 1 564 309 127 16 chr13 7673372 7673812 -94199357 + L2 LINE L2 2825 3313 0 637 188 8 16 chr13 7674700 7674828 -94198341 + FLAM_A SINE Alu 1 127 -6 369 299 7 28 chr13 7675615 7675759 -94197410 - MIR SINE MIR -41 221 81 1616 114 9 0 chr13 7676111 7676339 -94196830 - MER30 DNA MER1_type 0 230 1 2442 80 0 0 chr13 7678271 7678572 -94194597 - AluSg SINE Alu -9 301 1 427 337 10 15 chr13 7678648 7678847 -94194322 + LTR16B LTR ERVL 258 455 -9 2119 98 4 4 chr13 7679816 7680090 -94193079 + AluSq SINE Alu 29 302 -11 575 148 20 10 chr13 7680106 7680207 -94192962 - AluSg/x SINE Alu -16 293 192 183 208 42 21 chr13 7681190 7681238 -94191931 + L2 LINE L2 3261 3309 -4 474 18 0 0 chr13 7682021 7682076 -94191093 + (TG)n Simple_repeat Simple_repeat 2 56 0 2092 137 0 3 chr13 7682077 7682369 -94190800 - AluSx SINE Alu -21 291 1 5788 101 7 4 chr13 7683135 7684150 -94189019 - L1PA16 LINE L1 -2 6164 5128 219 288 178 8 chr13 7684211 7684329 -94188840 - MIR SINE MIR -70 192 55 2158 105 17 10 chr13 7685417 7685711 -94187458 - AluSq SINE Alu -17 296 1 23 0 0 0 chr13 7686324 7686347 -94186822 + AT_rich Low_complexity Low_complexity 1 23 0 2214 131 3 0 chr13 7686760 7687065 -94186104 + AluSx SINE Alu 1 306 -6 1701 178 11 3 chr13 7687351 7687637 -94185532 - AluJo SINE Alu -24 288 1 269 278 65 65 chr13 7687735 7687904 -94185265 - HAL1 LINE L1 -23 2484 2316 2337 105 0 3 chr13 7687927 7688233 -94184936 + AluSx SINE Alu 1 305 -7 23 0 0 0 chr13 7688447 7688470 -94184699 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 7690526 7690551 -94182618 + (TC)n Simple_repeat Simple_repeat 2 26 0 2130 108 11 14 chr13 7690551 7690838 -94182331 - AluSx SINE Alu -26 286 1 451 259 40 65 chr13 7691490 7691811 -94181358 - HAL1 LINE L1 -1351 1156 844 785 235 108 110 chr13 7692292 7692738 -94180431 + MLT2B2 LTR ERVL 1 445 -19 252 250 44 0 chr13 7693228 7693296 -94179873 + L1ME3A LINE L1 6072 6142 -28 2292 120 0 0 chr13 7694166 7694475 -94178694 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 7694477 7694503 -94178666 + AT_rich Low_complexity Low_complexity 1 26 0 743 151 0 0 chr13 7694514 7694620 -94178549 + U6 snRNA snRNA 2 107 0 837 317 31 54 chr13 7696310 7696909 -94176260 + L2 LINE L2 2711 3302 -11 1225 218 116 32 chr13 7697302 7697646 -94175523 - L1MA6 LINE L1 -4 6296 5924 434 314 118 14 chr13 7698139 7698415 -94174754 + L1ME LINE L1 5298 5600 -570 383 136 30 0 chr13 7698427 7698493 -94174676 + L1MC3 LINE L1 7552 7619 -166 418 272 49 33 chr13 7698503 7698704 -94174465 + L1ME LINE L1 5605 5824 -297 825 267 88 18 chr13 7699153 7699438 -94173731 + MER69 DNA AcHobo 244 548 -1978 1199 216 101 23 chr13 7699448 7699884 -94173285 + MER69 DNA AcHobo 2022 2491 -35 423 0 0 0 chr13 7700385 7700432 -94172737 + (CA)n Simple_repeat Simple_repeat 2 48 0 426 214 46 64 chr13 7701084 7701257 -94171912 - HAL1 LINE L1 -8 2499 2330 21 0 0 0 chr13 7701504 7701525 -94171644 + AT_rich Low_complexity Low_complexity 1 21 0 228 284 12 49 chr13 7701704 7701785 -94171384 - HAL1 LINE L1 -767 1740 1663 401 290 248 29 chr13 7701794 7702101 -94171068 - HAL1 LINE L1 -898 1609 1236 6288 55 46 45 chr13 7702101 7703219 -94169950 - SVA Other Other -551 1380 433 11929 157 51 108 chr13 7703340 7703507 -94169662 - L1 LINE L1 -1162 5166 4991 482 184 69 0 chr13 7703507 7703594 -94169575 - FLAM SINE Alu -12 131 39 11929 157 51 108 chr13 7703594 7704635 -94168534 - L1 LINE L1 -1337 4991 3892 1934 146 24 3 chr13 7704635 7704930 -94168239 + AluSx SINE Alu 1 301 -11 11929 157 51 108 chr13 7704930 7705066 -94168103 - L1 LINE L1 -2436 3892 3750 875 175 18 24 chr13 7705066 7705232 -94167937 - AluJb SINE Alu -13 299 135 11929 157 51 108 chr13 7705232 7707074 -94166095 - L1 LINE L1 -2578 3750 1940 7621 192 20 6 chr13 7707240 7709188 -94163981 - L1 LINE L1 -4065 1263 1 651 160 194 0 chr13 7709277 7709427 -94163742 + MER5A DNA MER1_type 4 187 -2 646 51 0 0 chr13 7710659 7710737 -94162432 - L1PA5 LINE L1 -1 6153 6076 212 373 36 0 chr13 7710743 7710853 -94162316 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 1769 105 34 4 chr13 7710866 7711137 -94162032 - L1PA5 LINE L1 -34 6120 5841 1983 146 104 3 chr13 7713242 7713570 -94159599 + MER46B DNA MER2_type 1 236 0 1988 156 3 3 chr13 7714300 7714608 -94158561 - AluJb SINE Alu -4 308 1 203 293 120 23 chr13 7716333 7716466 -94156703 - L2 LINE L2 -26 3246 3101 * 708 235 16 22 chr13 7716403 7716586 -94156583 - MER5A DNA MER1_type -7 182 1 2059 133 13 3 chr13 7717156 7717465 -94155704 + AluJb SINE Alu 1 312 0 297 327 84 40 chr13 7717606 7717758 -94155411 - L2 LINE L2 -194 3078 2909 537 216 251 6 chr13 7717758 7717925 -94155244 + MER3 DNA MER1_type 1 208 -1 297 327 84 40 chr13 7717925 7718023 -94155146 - L2 LINE L2 -363 2909 2817 1909 115 4 18 chr13 7718134 7718412 -94154757 - AluSx SINE Alu -38 274 1 323 320 22 43 chr13 7718863 7719064 -94154105 - MIR SINE MIR -60 202 4 342 308 83 8 chr13 7719310 7719430 -94153739 + MIR SINE MIR 21 149 -113 694 279 25 15 chr13 7719450 7719654 -94153515 - MIR SINE MIR -56 206 1 360 0 0 0 chr13 7721057 7721097 -94152072 + (TG)n Simple_repeat Simple_repeat 2 41 0 1718 138 19 70 chr13 7721097 7721409 -94151760 - AluJo SINE Alu -16 296 1 341 296 179 25 chr13 7721489 7721651 -94151518 - MIR SINE MIR -19 243 57 2172 129 0 10 chr13 7722852 7723161 -94150008 - AluSx SINE Alu -6 306 1 1338 159 0 10 chr13 7723322 7723530 -94149639 + AluJo SINE Alu 86 291 -21 21 36 0 0 chr13 7724909 7724937 -94148232 + AT_rich Low_complexity Low_complexity 1 28 0 222 327 159 0 chr13 7726094 7726207 -94146962 - L2 LINE L2 0 3272 3142 250 333 116 21 chr13 7726490 7726914 -94146255 - L2 LINE L2 -2333 981 518 565 167 11 0 chr13 7727424 7727514 -94145655 + FLAM_A SINE Alu 36 126 -16 2101 135 3 0 chr13 7727626 7727930 -94145239 - AluJb SINE Alu -7 305 1 497 241 103 69 chr13 7728686 7728843 -94144326 - MIR SINE MIR -37 225 56 2220 96 0 0 chr13 7728843 7729170 -94143999 + AluSx SINE Alu 1 327 0 497 241 103 69 chr13 7729170 7729213 -94143956 - MIR SINE MIR -206 56 16 3801 109 13 2 chr13 7729213 7729735 -94143434 + MER1A DNA MER1_type 1 528 -1 2008 144 0 6 chr13 7729937 7730250 -94142919 + AluSx SINE Alu 1 311 -1 2298 97 0 7 chr13 7731173 7731472 -94141697 + AluSg SINE Alu 1 297 -13 561 243 40 40 chr13 7731655 7731828 -94141341 - MLT1D LTR MaLR 0 505 333 628 223 0 136 chr13 7731879 7732018 -94141151 - MLT1D LTR MaLR -315 190 90 2177 107 3 3 chr13 7732018 7732316 -94140853 + AluSx SINE Alu 1 298 -14 628 223 0 136 chr13 7732316 7732396 -94140773 - MLT1D LTR MaLR -415 90 1 2225 217 0 21 chr13 7732975 7733455 -94139714 - L1MB4 LINE L1 -315 5865 5396 619 299 58 58 chr13 7733444 7734016 -94139153 - HAL1 LINE L1 -1653 854 283 * 2255 106 3 0 chr13 7734195 7734487 -94138682 + AluSq SINE Alu 1 293 -20 28 29 0 0 chr13 7735737 7735772 -94137397 + AT_rich Low_complexity Low_complexity 1 35 0 5643 115 20 53 chr13 7735791 7736908 -94136261 - L1PB1 LINE L1 -21 6130 5058 315 0 0 0 chr13 7739493 7739528 -94133641 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr13 7739785 7739810 -94133359 + (TA)n Simple_repeat Simple_repeat 1 25 0 870 133 193 6 chr13 7739832 7739993 -94133176 + MER46B DNA MER2_type 1 67 -169 308 136 0 0 chr13 7739993 7740037 -94133132 + AluSq SINE Alu 1 44 -257 2813 13 3 0 chr13 7741973 7742281 -94130888 - AluYb8 SINE Alu -9 309 1 411 337 10 15 chr13 7742357 7742556 -94130613 + LTR16B LTR ERVL 258 455 -9 1922 98 4 0 chr13 7743525 7743770 -94129399 + AluSq SINE Alu 29 274 -39 1139 153 6 0 chr13 7743873 7744049 -94129120 - AluSq SINE Alu -136 177 1 2421 77 3 0 chr13 7744710 7745010 -94128159 + AluY SINE Alu 1 301 -10 612 321 15 19 chr13 7745321 7745583 -94127586 + L1ME3 LINE L1 36 296 -6100 * 799 262 70 23 chr13 7745577 7745921 -94127248 + L1ME3 LINE L1 1022 1381 -5015 630 169 0 0 chr13 7745941 7746030 -94127139 + AluJ/FLAM SINE Alu 2 90 -222 2467 46 0 0 chr13 7746032 7746312 -94126857 + AluY SINE Alu 1 280 -31 198 0 0 0 chr13 7746312 7746334 -94126835 + (CA)n Simple_repeat Simple_repeat 1 22 0 5492 78 10 3 chr13 7746337 7747039 -94126130 + L1PA13 LINE L1 5454 6160 -3 1901 236 142 12 chr13 7747040 7747793 -94125376 + L1ME3 LINE L1 2437 3287 -2928 268 293 57 32 chr13 7747839 7747898 -94125271 + L1ME LINE L1 5704 5760 -361 2118 116 0 47 chr13 7747898 7748217 -94124952 + AluSx SINE Alu 1 304 -8 268 293 57 32 chr13 7748217 7748314 -94124855 + L1ME LINE L1 5760 5864 -257 1526 108 21 21 chr13 7748571 7748673 -94124496 + L1MA4 LINE L1 6060 6161 -139 2706 199 107 60 chr13 7748673 7749462 -94123707 + LTR1B LTR ERV1 1 826 0 1526 108 21 21 chr13 7749462 7749600 -94123569 + L1MA4 LINE L1 6160 6300 0 828 212 0 0 chr13 7749843 7750016 -94123153 + AluJb SINE Alu 137 309 0 198 297 208 0 chr13 7750854 7750955 -94122214 - MIR SINE MIR -82 180 59 2225 217 134 46 chr13 7751635 7751925 -94121244 + L1ME3 LINE L1 5148 5411 -820 1978 127 29 0 chr13 7751925 7752224 -94120945 + AluSx SINE Alu 1 307 0 2225 217 134 46 chr13 7752224 7752904 -94120265 + L1ME3 LINE L1 5411 6201 -30 696 238 15 40 chr13 7752988 7753190 -94119979 - L2 LINE L2 0 3313 3117 4503 144 64 53 chr13 7753737 7754164 -94119005 + L1MB3 LINE L1 5072 5493 -690 1538 174 28 21 chr13 7754164 7754451 -94118718 + AluJo SINE Alu 16 304 -8 4503 144 64 53 chr13 7754451 7755129 -94118040 + L1MB3 LINE L1 5493 6181 -2 1669 164 34 20 chr13 7756942 7757234 -94115935 - AluJo SINE Alu -16 296 1 205 26 53 26 chr13 7758159 7758197 -94114972 + (TTTTC)n Simple_repeat Simple_repeat 5 43 0 1814 154 17 7 chr13 7758202 7758500 -94114669 - AluJo SINE Alu -10 302 2 5774 116 18 13 chr13 7759598 7759786 -94113383 + L1PA16 LINE L1 5303 5489 -677 1999 146 7 3 chr13 7759786 7760081 -94113088 + AluJb SINE Alu 1 296 -16 5774 116 18 13 chr13 7760081 7760743 -94112426 + L1PA16 LINE L1 5489 6157 -9 662 44 0 11 chr13 7760858 7760949 -94112220 + (CA)n Simple_repeat Simple_repeat 2 91 0 2420 71 10 0 chr13 7761443 7761739 -94111430 + AluSq SINE Alu 1 299 -14 2048 139 0 16 chr13 7762213 7762530 -94110639 + AluSx SINE Alu 1 312 0 2411 170 42 2 chr13 7762737 7763166 -94110003 - L1PB4 LINE L1 -1 6155 5710 1930 149 0 3 chr13 7763300 7763601 -94109568 + AluJo SINE Alu 13 312 0 1872 186 20 23 chr13 7764686 7765078 -94108091 + L1MB7 LINE L1 5727 6117 -67 2318 91 7 3 chr13 7765414 7765721 -94107448 + AluSp SINE Alu 1 308 -5 285 98 0 0 chr13 7765826 7765867 -94107302 + (TG)n Simple_repeat Simple_repeat 2 42 0 2150 117 17 0 chr13 7765965 7766264 -94106905 + AluSx SINE Alu 1 304 -8 270 272 126 46 chr13 7766335 7766574 -94106595 + L2 LINE L2 1825 2082 -1232 232 290 14 0 chr13 7766665 7766734 -94106435 + L2 LINE L2 2251 2320 -994 2155 121 0 9 chr13 7767462 7767777 -94105392 - AluSq SINE Alu -1 312 1 187 292 70 128 chr13 7768215 7768472 -94104697 + L2 LINE L2 2985 3226 -46 23 33 0 0 chr13 7768634 7768664 -94104505 + AT_rich Low_complexity Low_complexity 1 30 0 1738 155 50 0 chr13 7768669 7768947 -94104222 - AluJb SINE Alu -20 292 1 2176 125 0 0 chr13 7768954 7769249 -94103920 - AluSc SINE Alu -14 295 1 234 180 20 0 chr13 7769260 7769310 -94103859 - L1MC2 LINE L1 -24 6320 6270 3133 98 71 11 chr13 7769311 7769762 -94103407 - MER1A DNA MER1_type -1 528 51 1671 174 25 41 chr13 7769783 7769888 -94103281 - L1MC2 LINE L1 -71 6273 6168 204 40 0 0 chr13 7769888 7769913 -94103256 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1998 134 0 11 chr13 7769918 7770202 -94102967 - AluSx SINE Alu -31 281 1 1671 174 25 41 chr13 7770202 7770352 -94102817 - L1MC2 LINE L1 -180 6164 6017 2352 156 65 12 chr13 7770352 7770755 -94102414 + MSTB LTR MaLR 3 426 0 1671 174 25 41 chr13 7770755 7770855 -94102314 - L1MC2 LINE L1 -327 6017 5917 1144 141 5 44 chr13 7770836 7770987 -94102182 + L1MC1 LINE L1 5741 5883 -450 * 2432 76 0 7 chr13 7770987 7771291 -94101878 + AluY SINE Alu 1 302 -9 1144 141 5 44 chr13 7771291 7771345 -94101824 + L1MC1 LINE L1 5883 5938 -395 239 27 0 0 chr13 7771364 7771401 -94101768 + Alu SINE Alu 265 301 -1 395 148 0 0 chr13 7771406 7771467 -94101702 + L1MC1 LINE L1 5878 5938 -395 2191 131 0 0 chr13 7771890 7772188 -94100981 - AluSq SINE Alu -15 298 1 408 284 129 40 chr13 7773116 7773657 -94099512 + L1MC4a LINE L1 5348 5575 -599 2750 137 11 18 chr13 7773804 7774250 -94098919 + MER65A LTR ERV1 2 444 -1 1701 186 3 0 chr13 7775230 7775520 -94097649 + AluJo SINE Alu 1 291 -21 955 114 0 0 chr13 7776149 7776280 -94096889 - L1PA10 LINE L1 -10 6158 6028 650 189 57 39 chr13 7777368 7777550 -94095619 + MER39 LTR ERV1 399 565 0 201 175 0 0 chr13 7777774 7777814 -94095355 + (CA)n Simple_repeat Simple_repeat 1 40 0 1248 216 164 19 chr13 7778032 7778403 -94094766 + LTR37A LTR ERV1 2 426 0 185 229 66 33 chr13 7779052 7779113 -94094056 - L2 LINE L2 -10 3262 3200 308 217 283 9 chr13 7779145 7779251 -94093918 + MER5A DNA MER1_type 55 189 0 204 314 81 24 chr13 7779386 7779510 -94093659 - MIR3 SINE MIR -30 178 48 890 286 179 29 chr13 7780624 7780736 -94092433 - L2 LINE L2 -71 3242 3148 1671 196 7 0 chr13 7780736 7781027 -94092142 + AluJo SINE Alu 1 293 -19 890 286 179 29 chr13 7781027 7781626 -94091543 - L2 LINE L2 -165 3148 2420 2317 105 0 3 chr13 7782372 7782677 -94090492 + AluSx SINE Alu 1 304 -8 277 297 188 7 chr13 7782706 7782844 -94090325 + MIR3 SINE MIR 36 198 -10 2043 114 0 0 chr13 7783314 7783595 -94089574 + AluSq SINE Alu 33 313 0 2140 100 14 17 chr13 7783747 7784038 -94089131 + AluSx SINE Alu 1 290 -22 186 167 0 0 chr13 7785134 7785170 -94087999 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 260 370 40 76 chr13 7786345 7786594 -94086575 - L2 LINE L2 -32 3240 3001 203 0 37 0 chr13 7786748 7786775 -94086394 + (TA)n Simple_repeat Simple_repeat 1 28 0 532 280 29 51 chr13 7786780 7786946 -94086223 + L1ME LINE L1 4036 4195 -1951 2273 108 7 0 chr13 7786946 7787242 -94085927 - AluSp SINE Alu -15 298 1 532 280 29 51 chr13 7787242 7787350 -94085819 + L1ME LINE L1 4195 4304 -1842 287 141 16 0 chr13 7787365 7787429 -94085740 + T-rich Low_complexity Low_complexity 1 65 0 15349 48 2 2 chr13 7787429 7789992 -94083177 - L1PA5 LINE L1 -2 6152 3588 610 196 22 14 chr13 7789993 7790131 -94083038 + MER4C LTR ERV1 327 465 0 403 246 95 83 chr13 7790167 7790484 -94082685 + L1ME LINE L1 4628 4952 -1194 2056 119 3 0 chr13 7790484 7790812 -94082357 + AluSq SINE Alu 1 329 0 403 246 95 83 chr13 7790812 7790842 -94082327 + L1ME LINE L1 4952 4980 -1166 530 280 75 19 chr13 7790977 7791304 -94081865 + L1ME LINE L1 5052 5414 -750 2005 188 89 32 chr13 7791304 7791766 -94081403 - LTR2B LTR ERV1 0 490 3 530 280 75 19 chr13 7791766 7791915 -94081254 + L1ME LINE L1 5414 5553 -611 514 262 40 0 chr13 7791965 7792114 -94081055 + MER112 DNA MER1_type 2 156 -104 2140 128 0 0 chr13 7792540 7792838 -94080331 + AluSq SINE Alu 2 299 -14 580 196 0 0 chr13 7792838 7792945 -94080224 + MER3 DNA MER1_type 103 209 0 231 270 16 0 chr13 7792902 7792965 -94080204 - MER3 DNA MER1_type -119 90 27 * 802 271 223 42 chr13 7792965 7793318 -94079851 + L2 LINE L2 822 1110 -2204 2516 56 7 13 chr13 7793318 7793623 -94079546 + AluY SINE Alu 1 303 -8 802 271 223 42 chr13 7793623 7793871 -94079298 + L2 LINE L2 1110 1532 -1782 388 269 81 36 chr13 7793872 7793892 -94079277 - L1ME LINE L1 -4153 1927 1909 2391 90 7 0 chr13 7793892 7794193 -94078976 - AluSx SINE Alu -9 303 1 388 269 81 36 chr13 7794193 7795035 -94078134 - L1ME LINE L1 -4171 1909 988 23 0 0 0 chr13 7795416 7795439 -94077730 + AT_rich Low_complexity Low_complexity 1 23 0 978 268 111 35 chr13 7795580 7795686 -94077483 - L1ME LINE L1 -5056 1014 917 195 0 39 0 chr13 7795686 7795712 -94077457 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2190 92 3 0 chr13 7795712 7795995 -94077174 - AluSq SINE Alu -1 309 1 978 268 111 35 chr13 7795995 7796504 -94076665 - L1ME LINE L1 -5152 918 348 1717 176 3 22 chr13 7796591 7796909 -94076260 - AluJb SINE Alu 0 312 1 248 229 0 0 chr13 7796999 7797069 -94076100 + A-rich Low_complexity Low_complexity 1 70 0 378 284 57 7 chr13 7797070 7797211 -94075958 - L1ME LINE L1 -5879 191 44 1270 259 143 18 chr13 7797357 7797832 -94075337 + L2 LINE L2 2045 2598 -716 3131 161 9 33 chr13 7797832 7797958 -94075211 + MER41D LTR ERV1 1 129 -428 2353 103 0 0 chr13 7797958 7798258 -94074911 + AluSx SINE Alu 1 300 -12 3131 161 9 33 chr13 7798258 7798702 -94074467 + MER41D LTR ERV1 129 557 0 1270 259 143 18 chr13 7798702 7798770 -94074399 + L2 LINE L2 2598 2656 -658 676 293 64 69 chr13 7798838 7799336 -94073833 + L2 LINE L2 2621 3216 -97 2050 149 0 0 chr13 7799336 7799644 -94073525 - AluJb SINE Alu -4 308 1 676 293 64 69 chr13 7799644 7799742 -94073427 + L2 LINE L2 3216 3313 0 2826 164 68 83 chr13 7799781 7800202 -94072967 + L1MB7 LINE L1 5360 5786 -398 2042 136 3 3 chr13 7800202 7800510 -94072659 + AluSx SINE Alu 4 311 -1 2826 164 68 83 chr13 7800510 7800778 -94072391 + L1MB7 LINE L1 5786 6056 -128 1654 161 20 24 chr13 7800778 7801070 -94072099 + AluJo SINE Alu 1 291 -21 1588 132 8 0 chr13 7801070 7801305 -94071864 - AluSx SINE Alu -19 293 57 2826 164 68 83 chr13 7801305 7801445 -94071724 + L1MB7 LINE L1 6054 6179 -5 657 289 92 9 chr13 7801904 7802122 -94071047 - MIR SINE MIR -1 261 26 924 231 89 0 chr13 7802799 7802858 -94070311 - Charlie5 DNA MER1_type 0 2624 2572 676 207 8 8 chr13 7802858 7802979 -94070190 + FLAM_A SINE Alu 1 121 -12 924 231 89 0 chr13 7802979 7803278 -94069891 - Charlie5 DNA MER1_type -52 2572 2234 330 188 257 0 chr13 7803275 7803376 -94069793 - Charlie5 DNA MER1_type -2485 127 1 * 390 219 85 37 chr13 7803708 7803872 -94069297 + L1MEd LINE L1 2 173 -5946 542 226 161 5 chr13 7803987 7804186 -94068983 + MLT1J LTR MaLR 36 265 -246 1596 110 200 0 chr13 7804191 7804491 -94068678 + MER46B DNA MER2_type 1 235 -1 2459 87 3 0 chr13 7804685 7804994 -94068175 - AluSp SINE Alu -3 310 1 606 246 104 38 chr13 7805049 7805260 -94067909 + MIR SINE MIR 17 241 -21 543 322 94 5 chr13 7806166 7806368 -94066801 + MIR SINE MIR 31 250 -12 359 251 204 42 chr13 7807004 7807171 -94065998 - MIR SINE MIR -21 241 48 245 182 18 0 chr13 7807396 7807451 -94065718 + L1ME LINE L1 5527 5582 -539 219 69 0 0 chr13 7807560 7807589 -94065580 + (TG)n Simple_repeat Simple_repeat 1 29 0 342 67 0 0 chr13 7807591 7807636 -94065533 + (TA)n Simple_repeat Simple_repeat 1 45 0 335 87 48 164 chr13 7807637 7807676 -94065493 + L1PB1 LINE L1 5795 5837 -314 1801 117 59 38 chr13 7807676 7807966 -94065203 + AluSq SINE Alu 1 296 -17 335 87 48 164 chr13 7807966 7808030 -94065139 + L1PB1 LINE L1 5837 5886 -265 618 13 0 0 chr13 7808030 7808105 -94065064 + L1PA3 LINE L1 6077 6151 -4 32 0 0 23 chr13 7808105 7808133 -94065036 + AT_rich Low_complexity Low_complexity 1 29 -13 1742 101 22 14 chr13 7808133 7808409 -94064760 + L1PB1 LINE L1 5874 6151 0 32 0 0 23 chr13 7808409 7808423 -94064746 + AT_rich Low_complexity Low_complexity 29 42 0 2362 83 13 0 chr13 7810490 7810792 -94062377 - AluSq SINE Alu -6 307 2 362 279 99 87 chr13 7864122 7864444 -94008725 - L1M4 LINE L1 -1826 4320 3995 1055 268 104 30 chr13 7864470 7864917 -94008252 - L1M4 LINE L1 -2218 3928 3411 2261 103 7 0 chr13 7864917 7865207 -94007962 + AluSc SINE Alu 1 292 -17 1055 268 104 30 chr13 7865207 7865449 -94007720 - L1M4 LINE L1 -2735 3411 3188 303 316 95 57 chr13 7865996 7866259 -94006910 - L1M4 LINE L1 -1186 4960 4688 860 132 26 0 chr13 7866840 7866978 -94006191 - L1P LINE L1 -1118 5028 4884 2850 100 15 8 chr13 7866978 7867379 -94005790 + L1PA13 LINE L1 5760 6163 0 860 132 26 0 chr13 7867379 7867392 -94005777 - L1P LINE L1 -1262 4884 4873 1830 167 7 10 chr13 7867956 7868261 -94004908 - AluJb SINE Alu -8 304 1 2287 111 7 0 chr13 7868906 7869213 -94003956 - AluSx SINE Alu -3 309 1 368 287 144 11 chr13 7869797 7869978 -94003191 + MIR SINE MIR 39 243 -19 2291 105 10 0 chr13 7870032 7870327 -94002842 - AluSx SINE Alu -14 298 1 764 77 0 0 chr13 7870420 7870511 -94002658 + AluSg/x SINE Alu 208 298 -14 2289 129 0 0 chr13 7870525 7870836 -94002333 + AluSx SINE Alu 1 311 -1 687 239 101 0 chr13 7871139 7871327 -94001842 - MER102a DNA MER1_type 0 330 124 1134 227 61 64 chr13 7872025 7872110 -94001059 + MER90 LTR ERV1 238 322 -292 2333 91 0 3 chr13 7872110 7872408 -94000761 + AluSq SINE Alu 1 297 -16 1134 227 61 64 chr13 7872408 7872697 -94000472 + MER90 LTR ERV1 322 611 -3 953 271 8 4 chr13 7875730 7875970 -93997199 + MIR SINE MIR 1 241 -21 348 296 24 48 chr13 7876836 7876961 -93996208 - MIR SINE MIR -117 145 24 1508 127 0 0 chr13 7877681 7877894 -93995275 + AluJb SINE Alu 1 213 -99 821 153 8 15 chr13 7879069 7879200 -93993969 + FLAM_A SINE Alu 4 133 0 767 146 0 41 chr13 7879481 7879604 -93993565 - FLAM_A SINE Alu -13 120 3 221 163 75 0 chr13 7879628 7879708 -93993461 + (TA)n Simple_repeat Simple_repeat 1 86 0 1914 118 3 88 chr13 7879955 7880294 -93992875 - AluSx SINE Alu -2 310 1 4477 239 48 62 chr13 7880711 7880743 -93992426 - L1M4c LINE L1 -4186 2639 2608 1538 142 62 31 chr13 7880743 7880990 -93992179 - L1MB5 LINE L1 -8 6166 5907 2477 186 13 45 chr13 7880990 7881462 -93991707 + MSTB2 LTR MaLR 1 457 0 1538 142 62 31 chr13 7881462 7881503 -93991666 - L1MB5 LINE L1 -267 5907 5869 4477 239 48 62 chr13 7881503 7883982 -93989187 - L1M4c LINE L1 -4217 2608 14 9499 52 1 0 chr13 7884760 7885830 -93987339 + MER11C LTR ERVK 1 1071 0 297 320 20 0 chr13 7886505 7886605 -93986564 - L3 LINE CR1 -249 1328 1227 642 153 46 8 chr13 7889696 7889827 -93983342 + L1MA4A LINE L1 6168 6303 0 27 0 0 0 chr13 7890431 7890458 -93982711 + AT_rich Low_complexity Low_complexity 1 27 0 831 211 139 0 chr13 7890908 7891088 -93982081 - MER3 DNA MER1_type -4 205 1 421 222 159 8 chr13 7892441 7892567 -93980602 + MIR3 SINE MIR 4 148 -60 184 382 80 43 chr13 7892686 7893196 -93979973 - L2 LINE L2 -661 2653 2125 216 220 169 0 chr13 7893518 7893577 -93979592 - L2 LINE L2 -2066 1248 1180 1425 226 108 39 chr13 7893860 7894294 -93978875 + MLT1C LTR MaLR 3 466 -1 668 265 113 95 chr13 7899084 7899974 -93973195 - L2 LINE L2 0 3313 2318 379 252 72 9 chr13 7900290 7900401 -93972768 - MER102a DNA MER1_type -136 194 77 289 286 50 21 chr13 7900588 7900728 -93972441 + L2 LINE L2 3106 3249 -64 2491 258 22 41 chr13 7904313 7905125 -93968044 + L1ME1 LINE L1 5373 6334 0 412 259 27 34 chr13 7906636 7906783 -93966386 + Tigger8 DNA MER2_type 430 575 -91 192 40 0 0 chr13 7907418 7907443 -93965726 + (TC)n Simple_repeat Simple_repeat 2 26 0 843 186 84 0 chr13 7907449 7907616 -93965553 - AluY SINE Alu -3 308 128 1337 144 4 48 chr13 7907619 7907848 -93965321 - AluSg/x SINE Alu -11 301 83 1360 180 62 42 chr13 7908444 7908733 -93964436 - AluJo SINE Alu -17 295 1 12051 118 43 9 chr13 7908804 7910646 -93962523 - Tigger1 DNA MER2_type 0 2418 514 1675 158 0 4 chr13 7910663 7910929 -93962240 - Tigger1 DNA MER2_type -2153 265 1 2099 121 0 3 chr13 7911023 7911335 -93961834 - AluSx SINE Alu 0 311 1 643 326 49 0 chr13 7911386 7911610 -93961559 - MIR SINE MIR -14 248 14 1638 149 19 55 chr13 7911979 7912288 -93960881 - AluJb SINE Alu -14 298 1 3792 180 100 9 chr13 7914008 7914990 -93958179 - L1MB8 LINE L1 -6 6172 5092 396 0 0 0 chr13 7915478 7915522 -93957647 + (CA)n Simple_repeat Simple_repeat 2 45 0 2323 113 0 0 chr13 7916823 7917132 -93956037 - AluSc SINE Alu 0 309 1 2578 173 86 29 chr13 7917154 7917703 -93955466 + L1MB5 LINE L1 5587 6166 -8 287 300 15 62 chr13 7917883 7918013 -93955156 + MER5B DNA MER1_type 49 172 -6 1714 149 27 27 chr13 7918092 7918388 -93954781 - AluJo SINE Alu -14 298 3 204 317 65 65 chr13 7918526 7918649 -93954520 - MIR SINE MIR -122 140 18 460 233 54 0 chr13 7919401 7919530 -93953639 - L1ME4a LINE L1 0 6121 5986 210 91 0 0 chr13 7922858 7922891 -93950278 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr13 7923860 7923889 -93949280 + AT_rich Low_complexity Low_complexity 1 29 0 1885 165 9 6 chr13 7923890 7924217 -93948952 - L1MA4 LINE L1 -10 6290 5963 215 317 39 39 chr13 7924625 7924729 -93948440 - MIR SINE MIR -47 215 112 2068 114 3 3 chr13 7924762 7925059 -93948110 - AluSx SINE Alu -15 297 1 813 185 0 22 chr13 7925182 7925317 -93947852 + FLAM_C SINE Alu 1 132 -1 396 103 0 0 chr13 7927870 7927928 -93945241 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 913 286 145 31 chr13 7927980 7928393 -93944776 + L2 LINE L2 2854 3313 0 333 303 62 28 chr13 7928928 7929073 -93944096 - L2 LINE L2 -458 2856 2707 4185 177 57 37 chr13 7929074 7930356 -93942813 - L1MB7 LINE L1 0 6184 4870 497 276 8 16 chr13 7930440 7930563 -93942606 - L2 LINE L2 -8 3305 3184 270 262 29 141 chr13 7931098 7931304 -93941865 - MIR SINE MIR -17 245 63 509 80 13 0 chr13 7933182 7933257 -93939912 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 2423 77 17 0 chr13 7933916 7934216 -93938953 - AluY SINE Alu -6 305 1 1096 188 99 5 chr13 7934716 7934876 -93938293 - AluJo SINE Alu -8 304 116 189 0 0 0 chr13 7934876 7934897 -93938272 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1096 188 99 5 chr13 7934897 7934959 -93938210 - AluJo SINE Alu -196 116 61 628 221 19 6 chr13 7934967 7935125 -93938044 - L1MB7 LINE L1 0 6184 6025 811 173 71 0 chr13 7935125 7935293 -93937876 - L1 LINE L1 -1006 5140 4961 2829 176 8 51 chr13 7935363 7935949 -93937220 - L1MB7 LINE L1 -192 5992 5432 853 300 88 11 chr13 7936670 7937126 -93936043 - L1ME3A LINE L1 -244 5926 5436 292 312 21 7 chr13 7937157 7937298 -93935871 - L1ME3A LINE L1 -3746 2400 2258 1422 181 63 52 chr13 7937566 7937969 -93935200 + MLT1E3 LTR MaLR 140 624 0 218 320 13 13 chr13 7938714 7938792 -93934377 - L2 LINE L2 -33 3239 3162 200 261 0 0 chr13 7939706 7939752 -93933417 - MIR SINE MIR -119 143 98 1042 190 59 69 chr13 7940103 7940541 -93932628 - MLT1D LTR MaLR -2 503 1 323 286 60 30 chr13 7941967 7942100 -93931069 + MIR SINE MIR 12 148 -114 180 200 0 0 chr13 7942788 7942828 -93930341 + CT-rich Low_complexity Low_complexity 1 40 0 195 302 175 24 chr13 7943141 7943267 -93929902 - MIR SINE MIR -35 227 83 266 230 95 0 chr13 7943657 7943731 -93929438 + MER103 DNA DNA 74 154 -12 1769 169 3 7 chr13 7943763 7944065 -93929104 + AluJb SINE Alu 1 301 -11 1416 192 8 4 chr13 7944547 7944808 -93928361 + AluJb SINE Alu 1 262 -50 609 193 12 28 chr13 7944809 7945062 -93928107 + GA-rich Low_complexity Low_complexity 1 249 0 358 204 20 10 chr13 7945073 7945171 -93927998 + GA-rich Low_complexity Low_complexity 4 102 0 470 285 43 38 chr13 7947620 7947806 -93925363 - L3b LINE CR1 -180 1403 1217 214 296 0 19 chr13 7947866 7947920 -93925249 + L2 LINE L2 3219 3271 -1 344 349 66 0 chr13 7948244 7948396 -93924773 - L2 LINE L2 -10 3262 3101 2282 121 0 0 chr13 7948396 7948693 -93924476 - AluSq SINE Alu -16 297 1 1929 160 0 3 chr13 7949015 7949309 -93923860 - AluJb SINE Alu -13 299 7 3624 139 43 3 chr13 7949418 7949995 -93923174 + MER7C DNA MER2_type 2 601 -1 857 230 72 5 chr13 7950312 7950521 -93922648 - MER58A DNA MER1_type -1 223 1 1046 158 18 0 chr13 7951254 7951425 -93921744 - AluJb SINE Alu -12 300 127 2429 83 0 6 chr13 7951425 7951738 -93921431 - AluY SINE Alu 0 311 1 2538 78 0 0 chr13 7953782 7954090 -93919079 + AluY SINE Alu 1 308 -3 1579 180 37 27 chr13 7955136 7955431 -93917738 - AluJo SINE Alu -14 298 1 2089 142 51 3 chr13 7955741 7956073 -93917096 - MER7A DNA MER2_type 0 346 1 210 37 0 0 chr13 7956410 7956437 -93916732 + (TC)n Simple_repeat Simple_repeat 2 28 0 2148 154 61 50 chr13 7956730 7957192 -93915977 + MLT1C LTR MaLR 1 467 0 2242 72 0 31 chr13 7958680 7959002 -93914167 - AluSx SINE Alu 0 313 1 191 261 130 22 chr13 7961444 7961536 -93911633 - MIR SINE MIR -52 210 109 691 196 8 8 chr13 7963635 7963791 -93909378 + FLAM_A SINE Alu 1 133 0 1573 125 52 66 chr13 7965190 7965478 -93907691 - AluJo SINE Alu -3 309 26 234 244 119 62 chr13 7965554 7965747 -93907422 - L1ME4a LINE L1 -60 6061 5858 341 141 0 94 chr13 7965747 7965811 -93907358 + AluJ/FLAM SINE Alu 1 58 -244 2037 131 24 0 chr13 7965933 7966224 -93906945 + AluSx SINE Alu 1 298 -14 610 117 0 29 chr13 7966364 7966467 -93906702 - FRAM SINE Alu -7 169 70 29 0 0 0 chr13 7968439 7968468 -93904701 + AT_rich Low_complexity Low_complexity 1 29 0 2022 130 0 10 chr13 7969379 7969671 -93903498 + AluSg SINE Alu 1 289 -21 429 145 0 0 chr13 7970079 7970155 -93903014 - AluJ/FRAM SINE Alu -10 302 227 586 301 12 45 chr13 7970282 7970528 -93902641 + MIR SINE MIR 3 240 -22 198 0 0 0 chr13 7971258 7971280 -93901889 + (TG)n Simple_repeat Simple_repeat 1 22 0 359 202 12 0 chr13 7972729 7972813 -93900356 + GA-rich Low_complexity Low_complexity 2 86 0 696 197 0 0 chr13 7975251 7975373 -93897796 + FLAM_A SINE Alu 1 122 -11 278 173 58 19 chr13 7975374 7975478 -93897691 + (TA)n Simple_repeat Simple_repeat 1 108 0 2254 123 0 22 chr13 7975734 7976051 -93897118 + AluSx SINE Alu 1 310 -2 464 230 164 7 chr13 7978276 7978428 -93894741 + MER5A DNA MER1_type 14 189 0 1890 229 65 49 chr13 7979975 7980526 -93892643 - MER119 DNA MER1_type -21 562 3 223 356 85 5 chr13 7980955 7981143 -93892026 + L3 LINE CR1 849 1051 -526 361 282 41 47 chr13 7981180 7981350 -93891819 + L3 LINE CR1 1156 1324 -253 5218 73 30 6 chr13 7983751 7984426 -93888743 + LTR8 LTR ERV1 1 691 0 258 106 0 0 chr13 7986482 7986529 -93886640 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2032 109 0 21 chr13 7986529 7986814 -93886355 - AluSq SINE Alu -34 279 1 228 244 0 0 chr13 7987444 7987534 -93885635 + (TG)n Simple_repeat Simple_repeat 2 91 0 197 247 10 0 chr13 7987569 7987666 -93885503 + (TG)n Simple_repeat Simple_repeat 2 99 0 3274 100 15 0 chr13 7987872 7988333 -93884836 + L1PA10 LINE L1 5701 6168 0 291 377 62 0 chr13 7989782 7989928 -93883241 + MER91A DNA MER1_type 17 171 -25 322 220 14 113 chr13 7992722 7992863 -93880306 + L1MB3 LINE L1 6050 6176 -7 1680 186 46 15 chr13 7994365 7994692 -93878477 - MER1B DNA MER1_type 0 337 1 2329 53 0 28 chr13 7994749 7995033 -93878136 + AluY SINE Alu 16 291 -20 1999 141 3 20 chr13 7995242 7995548 -93877621 - AluSx SINE Alu -11 301 1 1202 187 72 75 chr13 7996268 7996484 -93876685 + MER2 DNA MER2_type 1 218 -127 2139 101 3 3 chr13 7996484 7996795 -93876374 - AluSq SINE Alu 0 311 1 1202 187 72 75 chr13 7996795 7996898 -93876271 + MER2 DNA MER2_type 218 320 -25 189 206 48 16 chr13 7997393 7997456 -93875713 - L2 LINE L2 -251 3021 2957 2298 93 3 0 chr13 7998516 7998806 -93874363 - AluSg SINE Alu -8 302 12 1809 110 0 4 chr13 7998871 7999107 -93874062 + AluSx SINE Alu 1 235 -77 25 0 0 0 chr13 7999122 7999147 -93874022 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 8000432 8000455 -93872714 + AT_rich Low_complexity Low_complexity 1 23 0 1452 223 35 77 chr13 8000455 8000509 -93872660 - L1ME1 LINE L1 -10 6156 6101 2048 101 3 82 chr13 8000509 8000837 -93872332 - AluSq SINE Alu -11 302 1 1452 223 35 77 chr13 8000837 8001325 -93871844 - L1ME1 LINE L1 -65 6101 5637 366 326 62 13 chr13 8001804 8002028 -93871141 + MIR SINE MIR 8 242 -20 347 327 65 6 chr13 8002133 8002301 -93870868 - MIR SINE MIR -51 211 34 5923 132 21 7 chr13 8003125 8004164 -93869005 + L1PA13 LINE L1 4270 5347 -816 1892 148 22 29 chr13 8004164 8004475 -93868694 + AluJb SINE Alu 1 309 -3 5923 132 21 7 chr13 8004475 8005283 -93867886 + L1PA13 LINE L1 5347 6142 -21 411 21 0 0 chr13 8005283 8005331 -93867838 + (CA)n Simple_repeat Simple_repeat 2 49 0 1484 160 65 44 chr13 8006385 8006678 -93866491 + AluJo SINE Alu 3 301 -11 455 172 16 16 chr13 8006691 8006813 -93866356 + GA-rich Low_complexity Low_complexity 3 124 0 284 304 8 32 chr13 8007261 8007386 -93865783 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 1248 227 50 59 chr13 8007989 8008447 -93864722 + L1ME1 LINE L1 5704 6157 -9 360 0 0 0 chr13 8008575 8008615 -93864554 + (CA)n Simple_repeat Simple_repeat 2 41 0 2184 111 3 7 chr13 8009706 8010003 -93863166 - AluSx SINE Alu -16 296 1 1350 105 51 43 chr13 8010643 8010740 -93862429 + L1MA3 LINE L1 6047 6142 -163 2321 101 0 0 chr13 8010740 8011037 -93862132 + AluSq SINE Alu 1 297 -16 1350 105 51 43 chr13 8011037 8011196 -93861973 + L1MA3 LINE L1 6142 6305 0 35 0 0 0 chr13 8011196 8011231 -93861938 + AT_rich Low_complexity Low_complexity 1 35 0 490 94 47 24 chr13 8012561 8012646 -93860523 - MER34 LTR ERV1 0 542 456 810 84 0 9 chr13 8012650 8012757 -93860412 + FLAM_A SINE Alu 24 129 -13 2159 183 27 5 chr13 8012757 8013199 -93859970 - MER34 LTR ERV1 -64 478 27 585 258 91 45 chr13 8013753 8013974 -93859195 - MIR SINE MIR 0 262 32 195 283 43 0 chr13 8015252 8015298 -93857871 + L2 LINE L2 363 410 -2904 2828 82 0 11 chr13 8015471 8015850 -93857319 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr13 8017217 8017253 -93855916 + AT_rich Low_complexity Low_complexity 1 36 0 1860 167 0 26 chr13 8018981 8019286 -93853883 + AluJb SINE Alu 1 297 -15 1852 142 87 3 chr13 8019877 8020344 -93852825 - LTR31 LTR ERV1 -60 559 1 2406 189 17 14 chr13 8020382 8021306 -93851863 - L1M4 LINE L1 -477 5707 4786 1630 164 26 56 chr13 8021888 8022071 -93851098 - AluJo SINE Alu -16 296 124 2279 114 0 0 chr13 8022071 8022368 -93850801 + AluSx SINE Alu 1 297 -15 1630 164 26 56 chr13 8022368 8022489 -93850680 - AluJo SINE Alu -188 124 1 978 164 26 11 chr13 8022904 8023093 -93850076 + L1PA16 LINE L1 5959 6150 -16 291 208 0 52 chr13 8023148 8023225 -93849944 + L2 LINE L2 2330 2402 -912 184 294 56 86 chr13 8023256 8023453 -93849716 + L2 LINE L2 2826 3016 -256 414 263 26 51 chr13 8023461 8023617 -93849552 + L2 LINE L2 3160 3311 -2 26 30 0 0 chr13 8024329 8024362 -93848807 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 8025127 8025164 -93848005 + AT_rich Low_complexity Low_complexity 1 37 0 1702 180 3 37 chr13 8025323 8025623 -93847546 + AluJb SINE Alu 1 290 -22 431 289 75 19 chr13 8025629 8025947 -93847222 - HAL1 LINE L1 -143 2364 2029 271 271 182 6 chr13 8026043 8026224 -93846945 - HAL1 LINE L1 -607 1900 1688 252 250 61 45 chr13 8026239 8026371 -93846798 + Charlie2 DNA MER1_type 2019 2152 -710 * 389 188 134 38 chr13 8026365 8026551 -93846618 + Charlie2 DNA MER1_type 2401 2604 -258 3136 62 60 0 chr13 8026552 8026985 -93846184 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 8026985 8027057 -93846112 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 8027083 8027138 -93846031 - L2 LINE L2 -103 3169 3117 719 92 46 35 chr13 8027138 8027312 -93845857 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 8027443 8027833 -93845336 + MLT2D LTR ERVL 1 362 -52 261 57 0 0 chr13 8027842 8027877 -93845292 + (CA)n Simple_repeat Simple_repeat 1 35 0 673 171 62 21 chr13 8027882 8028075 -93845094 + Charlie2 DNA MER1_type 2594 2794 -68 3766 186 64 30 chr13 8028100 8028488 -93844681 + L1MB3 LINE L1 4598 4971 -1212 1809 147 0 58 chr13 8028488 8028801 -93844368 + AluJb SINE Alu 1 295 -17 3766 186 64 30 chr13 8028801 8029945 -93843224 + L1MB3 LINE L1 4971 6173 -10 337 362 88 27 chr13 8030132 8030461 -93842708 + L2 LINE L2 2920 3268 -4 1613 181 57 10 chr13 8031437 8031735 -93841434 - AluJb SINE Alu 0 312 1 376 308 51 10 chr13 8032192 8032402 -93840767 + MIR SINE MIR 38 254 -8 293 359 0 0 chr13 8032523 8032615 -93840554 - L2 LINE L2 -19 3294 3203 212 175 0 0 chr13 8033405 8033445 -93839724 + T-rich Low_complexity Low_complexity 3 42 0 999 221 38 14 chr13 8035435 8035648 -93837521 - MER20 DNA MER1_type -1 218 1 245 275 190 16 chr13 8036163 8036410 -93836759 - L1MC/D LINE L1 -2265 5543 5254 267 312 135 18 chr13 8036789 8036959 -93836210 - L2 LINE L2 -369 2945 2756 24 0 0 0 chr13 8037173 8037197 -93835972 + AT_rich Low_complexity Low_complexity 1 24 0 399 254 53 77 chr13 8037279 8037617 -93835552 - HAL1b LINE L1 -841 507 178 2087 129 0 3 chr13 8037732 8038026 -93835143 - AluSx SINE Alu -19 293 1 2028 148 3 10 chr13 8038900 8039211 -93833958 - AluJo SINE Alu -1 311 3 1072 184 79 44 chr13 8039680 8039995 -93833174 + L1MA7 LINE L1 5966 6291 0 219 281 146 73 chr13 8040194 8040290 -93832879 - L2 LINE L2 -25 3247 3145 2259 98 0 16 chr13 8040850 8041166 -93832003 - AluSx SINE Alu -1 311 1 477 0 0 0 chr13 8043423 8043476 -93829693 + (TA)n Simple_repeat Simple_repeat 1 53 0 192 260 83 73 chr13 8043569 8043635 -93829534 - L2 LINE L2 0 3272 3206 344 306 87 35 chr13 8043635 8043765 -93829404 + MER5A DNA MER1_type 1 144 -45 1715 158 14 28 chr13 8043765 8044056 -93829113 - AluJb SINE Alu -14 298 12 344 306 87 35 chr13 8044056 8044098 -93829071 + MER5A DNA MER1_type 144 182 -7 523 229 76 111 chr13 8044380 8044777 -93828392 - L1MC4 LINE L1 -9 8033 7651 2350 93 3 0 chr13 8044966 8045267 -93827902 - AluY SINE Alu -9 302 1 2213 128 0 0 chr13 8045315 8045621 -93827548 + AluSx SINE Alu 1 306 -6 211 343 135 27 chr13 8046876 8047290 -93825879 + L2 LINE L2 2075 2533 -781 557 185 11 0 chr13 8047295 8047387 -93825782 - FLAM_A SINE Alu -49 93 1 263 287 37 29 chr13 8047687 8047823 -93825346 + Charlie2 DNA MER1_type 170 306 -2556 435 227 136 23 chr13 8048129 8048305 -93824864 + Charlie2a DNA MER1_type 1467 1662 -1200 1202 268 31 19 chr13 8048377 8048863 -93824306 + Charlie2a DNA MER1_type 1661 2152 -710 389 188 134 38 chr13 8048857 8049043 -93824126 + Charlie2a DNA MER1_type 2401 2604 -258 * 3136 62 60 0 chr13 8049044 8049477 -93823692 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 8049477 8049549 -93823620 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 8049575 8049630 -93823539 - L2 LINE L2 -103 3169 3117 755 84 34 50 chr13 8049630 8049809 -93823360 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 8049940 8050330 -93822839 + MLT2D LTR ERVL 1 362 -52 297 51 0 0 chr13 8050339 8050378 -93822791 + (CA)n Simple_repeat Simple_repeat 1 39 0 705 194 58 19 chr13 8050383 8050589 -93822580 + Charlie2a DNA MER1_type 2594 2807 -55 1561 212 40 52 chr13 8050602 8050993 -93822176 + L1MC4a LINE L1 4598 4985 -1161 1808 144 0 58 chr13 8050993 8051306 -93821863 + AluJb SINE Alu 1 295 -17 1561 212 40 52 chr13 8051306 8051334 -93821835 + L1MC4a LINE L1 4985 5012 -1134 339 293 72 80 chr13 8051686 8052252 -93820917 + L1 LINE L1 4217 4778 -1368 240 238 88 7 chr13 8052349 8052491 -93820678 + L1P LINE L1 4883 5045 -1101 410 284 66 25 chr13 8052571 8052827 -93820342 + L1 LINE L1 5150 5423 -748 687 319 60 45 chr13 8052839 8053434 -93819735 + L1MC4a LINE L1 5317 5920 -1888 1235 173 128 12 chr13 8053444 8053687 -93819482 - AluJo SINE Alu -30 282 12 180 0 0 0 chr13 8053735 8053755 -93819414 + (TG)n Simple_repeat Simple_repeat 2 21 0 1649 179 155 29 chr13 8054642 8054913 -93818256 - LTR54B LTR ERV1 -32 466 124 356 0 23 0 chr13 8054913 8054957 -93818212 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1649 179 155 29 chr13 8054957 8055099 -93818070 - LTR54B LTR ERV1 -374 124 1 261 273 34 23 chr13 8055410 8055498 -93817671 + L2 LINE L2 3184 3272 0 423 0 0 0 chr13 8056175 8056222 -93816947 + (CA)n Simple_repeat Simple_repeat 1 47 0 653 73 0 0 chr13 8057518 8057600 -93815569 + L1P LINE L1 2 83 -6063 1056 205 63 14 chr13 8060496 8060835 -93812334 - MSTD LTR MaLR 0 396 1 2231 104 19 0 chr13 8061144 8061451 -93811718 + AluSq SINE Alu 1 313 0 484 140 0 20 chr13 8061454 8061554 -93811615 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 1700 218 19 14 chr13 8062112 8062475 -93810694 + MLT1A1 LTR MaLR 1 365 0 2265 106 0 0 chr13 8062988 8063280 -93809889 - AluSg SINE Alu -18 292 1 24 0 0 0 chr13 8064335 8064359 -93808810 + AT_rich Low_complexity Low_complexity 1 24 0 2391 90 3 0 chr13 8064645 8064946 -93808223 + AluSq SINE Alu 1 302 -11 417 305 89 39 chr13 8064962 8065244 -93807925 - L2 LINE L2 -35 3237 2942 335 200 0 0 chr13 8066365 8066425 -93806744 - MLT1J2 LTR MaLR -45 405 346 1694 255 30 30 chr13 8066443 8066976 -93806193 + MER74B LTR ERVL 56 588 -34 400 226 69 2 chr13 8067081 8067220 -93805949 - MLT1J2 LTR MaLR -229 180 36 2337 90 0 3 chr13 8070051 8070350 -93802819 + AluSx SINE Alu 1 298 -14 949 156 58 40 chr13 8070586 8070759 -93802410 - FRAM SINE Alu -1 175 1 1224 168 28 5 chr13 8070924 8071138 -93802031 + MER20 DNA MER1_type 1 219 0 837 130 0 3 chr13 8071447 8071670 -93801499 + AluSq SINE Alu 2 297 -16 477 243 56 21 chr13 8071679 8071823 -93801346 + MIR SINE MIR 73 221 -41 1972 127 28 11 chr13 8071865 8072148 -93801021 + AluSx SINE Alu 1 288 -24 222 37 0 0 chr13 8072148 8072175 -93800994 + (TA)n Simple_repeat Simple_repeat 1 27 0 288 266 108 29 chr13 8072975 8073079 -93800090 + L2 LINE L2 2392 2511 -803 1532 163 83 28 chr13 8073079 8073367 -93799802 - AluJo SINE Alu -8 304 1 288 266 108 29 chr13 8073367 8073401 -93799768 + L2 LINE L2 2511 2541 -773 726 150 92 0 chr13 8073431 8073551 -93799618 + MER3 DNA MER1_type 3 133 -76 4168 167 38 60 chr13 8073553 8073720 -93799449 - L1MB7 LINE L1 -8 6176 6007 2489 84 0 0 chr13 8073720 8074019 -93799150 + AluSx SINE Alu 1 299 -13 4168 167 38 60 chr13 8074019 8075028 -93798141 - L1MB7 LINE L1 -177 6007 5024 1538 185 19 0 chr13 8075028 8075298 -93797871 + L1PB4 LINE L1 5881 6155 -1 4168 167 38 60 chr13 8075298 8075331 -93797838 - L1MB7 LINE L1 -1160 5024 4992 816 147 78 11 chr13 8075337 8075528 -93797641 - L1MB4 LINE L1 -1 6179 5976 389 216 11 0 chr13 8075528 8075616 -93797553 + MER3 DNA MER1_type 121 209 0 559 306 76 20 chr13 8075632 8076093 -93797076 + L2 LINE L2 2595 3073 -240 1027 170 0 6 chr13 8076124 8076295 -93796874 - FRAM SINE Alu -10 166 1 2299 114 10 0 chr13 8076313 8076621 -93796548 - AluSx SINE Alu 0 312 2 476 257 131 23 chr13 8076631 8076806 -93796363 + L2 LINE L2 3119 3312 -1 1361 157 25 58 chr13 8077534 8077675 -93795494 + L1PA16 LINE L1 5896 6026 -140 2247 97 0 0 chr13 8077675 8077996 -93795173 + AluSg1 SINE Alu 2 322 0 1361 157 25 58 chr13 8077996 8078127 -93795042 + L1PA16 LINE L1 6026 6160 -6 205 171 0 0 chr13 8078309 8078344 -93794825 + A-rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 8078715 8078735 -93794434 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 507 307 70 18 chr13 8079893 8080235 -93792934 - L1ME4a LINE L1 -52 6069 5710 588 241 69 46 chr13 8080256 8080517 -93792652 - L2 LINE L2 -588 2726 2460 438 281 131 14 chr13 8081908 8082129 -93791040 + MER115 DNA AcHobo 1 247 -446 229 290 121 40 chr13 8084953 8085110 -93788059 + MIR SINE MIR 32 196 -63 257 174 14 0 chr13 8085355 8085424 -93787745 + (CA)n Simple_repeat Simple_repeat 1 70 0 334 224 51 10 chr13 8085426 8085524 -93787645 + MER5A DNA MER1_type 88 189 0 2260 66 0 0 chr13 8087571 8087845 -93785324 + AluY SINE Alu 33 306 -5 4407 128 38 46 chr13 8088423 8089183 -93783986 - LTR1 LTR ERV1 0 785 32 566 271 181 52 chr13 8090773 8091198 -93781971 + MLT1K LTR MaLR 17 496 -92 1405 206 41 16 chr13 8091466 8091782 -93781387 - MER33 DNA MER1_type 0 324 1 2314 70 39 0 chr13 8092392 8092678 -93780491 - AluY SINE Alu -14 297 1 210 302 215 19 chr13 8092746 8093057 -93780112 + L2 LINE L2 2591 2962 -352 3098 179 41 80 chr13 8093251 8094015 -93779154 + L1MB2 LINE L1 5438 6171 0 25 0 0 0 chr13 8095769 8095794 -93777375 + AT_rich Low_complexity Low_complexity 1 25 0 1171 60 7 0 chr13 8097085 8097235 -93775934 - MER41B LTR ERV1 0 635 485 * 1924 89 4 4 chr13 8097233 8097492 -93775677 - MER41A LTR ERV1 -295 259 1 390 42 0 0 chr13 8100330 8100378 -93772791 + (GA)n Simple_repeat Simple_repeat 1 48 0 465 198 10 0 chr13 8100504 8100600 -93772569 + MER5A DNA MER1_type 9 105 -84 627 51 0 0 chr13 8101646 8101725 -93771444 + (ATG)n Simple_repeat Simple_repeat 1 79 0 239 289 48 0 chr13 8101806 8101889 -93771280 - MIR SINE MIR -135 127 41 1275 115 22 0 chr13 8102011 8102194 -93770975 + AluSq SINE Alu 121 307 -6 2374 108 0 0 chr13 8103857 8104164 -93769005 - AluSq SINE Alu -6 307 1 660 216 52 71 chr13 8105771 8106039 -93767130 + L1ME3A LINE L1 5903 6165 -5 2253 89 10 0 chr13 8106096 8106387 -93766782 - AluSq SINE Alu -19 294 1 2113 116 7 3 chr13 8107330 8107623 -93765546 + AluSp SINE Alu 1 294 -19 261 0 0 0 chr13 8107997 8108026 -93765143 + (TA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr13 8108026 8108056 -93765113 + AT_rich Low_complexity Low_complexity 1 30 0 2320 99 0 3 chr13 8108632 8108935 -93764234 + AluSg SINE Alu 1 302 -8 2118 106 0 3 chr13 8110069 8110375 -93762794 - AluSx SINE Alu 0 305 1 2215 79 41 7 chr13 8110736 8111026 -93762143 - AluY SINE Alu -10 301 2 366 42 0 0 chr13 8111208 8111256 -93761913 + (TC)n Simple_repeat Simple_repeat 1 48 0 213 175 0 0 chr13 8111332 8111372 -93761797 + CT-rich Low_complexity Low_complexity 2 41 0 44786 37 5 1 chr13 8111800 8117929 -93755240 - L1PA4 LINE L1 0 6155 2 413 311 28 38 chr13 8118366 8118684 -93754485 - L2 LINE L2 -373 2941 2627 2614 181 71 68 chr13 8118776 8119496 -93753673 - MER72 LTR ERV1 0 722 1 34 55 0 0 chr13 8120218 8120273 -93752896 + AT_rich Low_complexity Low_complexity 1 55 0 186 240 56 104 chr13 8121501 8121626 -93751543 + L2 LINE L2 2203 2321 -993 297 0 0 0 chr13 8121691 8121724 -93751445 + (CA)n Simple_repeat Simple_repeat 1 33 0 675 120 0 0 chr13 8121777 8121902 -93751267 + AluSp/q SINE Alu 193 317 0 503 270 173 17 chr13 8122159 8122448 -93750721 + L2 LINE L2 2627 2960 -354 238 249 142 53 chr13 8122532 8122701 -93750468 + L2 LINE L2 3130 3313 0 357 310 7 45 chr13 8122703 8122749 -93750420 + MER5B DNA MER1_type 30 76 -102 1303 193 9 0 chr13 8122749 8122982 -93750187 - MER46A DNA MER2_type 0 236 2 357 310 7 45 chr13 8122982 8123090 -93750079 + MER5B DNA MER1_type 76 178 0 180 0 0 0 chr13 8124167 8124187 -93748982 + (TC)n Simple_repeat Simple_repeat 2 21 0 1991 69 3 73 chr13 8125709 8125998 -93747171 + AluSx SINE Alu 11 279 -33 353 125 0 0 chr13 8126001 8126049 -93747120 + AluS SINE Alu 230 277 -23 349 118 0 0 chr13 8126052 8126144 -93747025 + AluSc SINE Alu 230 321 0 1033 174 25 45 chr13 8127845 8128176 -93744993 + L1MA6 LINE L1 5997 6298 -2 1904 173 48 41 chr13 8128407 8128870 -93744299 - L1MB4 LINE L1 -39 6141 5676 21 0 0 0 chr13 8129674 8129695 -93743474 + AT_rich Low_complexity Low_complexity 1 21 0 3827 169 36 12 chr13 8130635 8130907 -93742262 + L1MA7 LINE L1 5509 5773 -518 369 0 0 0 chr13 8130907 8130948 -93742221 + (CA)n Simple_repeat Simple_repeat 2 42 0 3827 169 36 12 chr13 8130948 8131430 -93741739 + L1MA7 LINE L1 5773 6281 -10 213 266 121 32 chr13 8131672 8131796 -93741373 + MIR SINE MIR 15 149 -113 267 360 22 14 chr13 8132621 8132760 -93740409 + MIR3 SINE MIR 43 182 -26 279 290 117 61 chr13 8132775 8133203 -93739966 + L2 LINE L2 1931 2382 -932 582 268 199 35 chr13 8134017 8134420 -93738749 - LTR33A LTR ERVL 0 523 55 189 173 19 39 chr13 8134554 8134606 -93738563 + L2 LINE L2 3262 3312 -1 239 304 72 0 chr13 8135369 8135438 -93737731 - MIR3 SINE MIR -26 182 109 180 77 0 0 chr13 8136034 8136060 -93737109 + (TTCCC)n Simple_repeat Simple_repeat 2 27 0 299 308 76 22 chr13 8136176 8136373 -93736796 - MIR SINE MIR -54 208 4 1577 174 0 71 chr13 8138528 8138838 -93734331 - AluJo SINE Alu -23 289 2 1800 135 35 7 chr13 8139567 8139849 -93733320 + AluJb SINE Alu 21 310 -2 2232 103 3 22 chr13 8140087 8140398 -93732771 + AluSg SINE Alu 1 305 -5 2317 181 42 2 chr13 8142970 8143400 -93729769 - MLT1C LTR MaLR 0 467 21 2671 102 6 3 chr13 8143439 8143801 -93729368 + THE1B LTR MaLR 1 363 -1 2368 76 0 10 chr13 8144003 8144306 -93728863 + AluY SINE Alu 1 300 -11 2318 95 10 0 chr13 8144482 8144777 -93728392 - AluSq SINE Alu -15 298 1 341 333 26 19 chr13 8145193 8145349 -93727820 + L2 LINE L2 3116 3272 0 842 161 0 0 chr13 8145469 8145593 -93727576 + FLAM_C SINE Alu 1 124 -19 24 0 0 0 chr13 8145599 8145623 -93727546 + AT_rich Low_complexity Low_complexity 1 24 0 689 221 0 0 chr13 8147572 8147712 -93725457 + Tigger4(Zombi) DNA MER2_type 1 140 -2591 1504 125 141 4 chr13 8148328 8148584 -93724585 + AluJo SINE Alu 1 291 -21 438 305 155 29 chr13 8148901 8149504 -93723665 + L2 LINE L2 2632 3311 -2 1701 175 53 50 chr13 8149810 8150170 -93722999 + MER46B DNA MER2_type 1 236 0 2387 97 0 3 chr13 8150516 8150826 -93722343 + AluSq SINE Alu 1 309 -4 2125 115 0 26 chr13 8151602 8151906 -93721263 - AluSx SINE Alu -16 296 1 310 230 204 102 chr13 8152069 8152295 -93720874 + MIR SINE MIR 2 250 -12 403 325 76 30 chr13 8153173 8153410 -93719759 + MIR SINE MIR 9 256 -6 210 373 31 6 chr13 8153473 8153634 -93719535 - L2 LINE L2 -237 3035 2871 288 300 71 36 chr13 8153769 8153909 -93719260 - MIR SINE MIR -26 236 92 2041 170 84 5 chr13 8154189 8154583 -93718586 - MSTB LTR MaLR -1 425 1 204 200 0 0 chr13 8156076 8156131 -93717038 + T-rich Low_complexity Low_complexity 1 55 0 2416 63 0 0 chr13 8156322 8156623 -93716546 + AluY SINE Alu 4 304 -7 22 35 0 0 chr13 8156668 8156697 -93716472 + AT_rich Low_complexity Low_complexity 1 29 0 2133 117 0 0 chr13 8157594 8157894 -93715275 - AluSx SINE Alu -12 300 1 276 283 198 6 chr13 8159531 8159708 -93713461 + MIR SINE MIR 13 223 -39 344 266 99 17 chr13 8160856 8161077 -93712092 - L1ME2 LINE L1 -298 5866 5629 574 237 84 42 chr13 8161082 8161177 -93711992 - L1ME2 LINE L1 -913 5233 5143 2017 114 0 7 chr13 8161177 8161475 -93711694 - AluSx SINE Alu -16 296 1 574 237 84 42 chr13 8161475 8161641 -93711528 - L1ME2 LINE L1 -1003 5143 4961 1824 179 33 15 chr13 8162063 8162399 -93710770 + MER7A DNA MER2_type 2 341 -5 2019 104 35 0 chr13 8162977 8163266 -93709903 + AluSx SINE Alu 1 299 -13 1316 163 26 0 chr13 8163275 8163502 -93709667 + 7SLRNA srpRNA srpRNA 51 283 -37 26 0 0 0 chr13 8163521 8163547 -93709622 + AT_rich Low_complexity Low_complexity 1 26 0 468 277 54 14 chr13 8163570 8163718 -93709451 + MIR SINE MIR 24 177 -85 442 264 98 31 chr13 8164797 8164960 -93708209 - MIR SINE MIR -87 175 2 2138 115 0 0 chr13 8165494 8165799 -93707370 - AluSx SINE Alu -7 305 1 749 209 173 5 chr13 8167091 8167282 -93705887 - MIR SINE MIR -4 258 36 1158 256 33 39 chr13 8167287 8167650 -93705519 + MLT1A2 LTR MaLR 1 361 -13 1987 134 0 0 chr13 8168559 8168851 -93704318 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 8169431 8169454 -93703715 + AT_rich Low_complexity Low_complexity 1 23 0 550 176 0 0 chr13 8169471 8169573 -93703596 - HY1 scRNA scRNA -10 102 1 2690 223 55 18 chr13 8169711 8170379 -93702790 + L1ME2 LINE L1 5456 6148 -16 1459 179 36 17 chr13 8171122 8171423 -93701746 - AluJo SINE Alu -5 307 1 216 0 0 0 chr13 8172274 8172298 -93700871 + (A)n Simple_repeat Simple_repeat 1 24 0 12386 88 9 2 chr13 8172310 8173898 -93699271 + L1PA7 LINE L1 8 1606 -4855 16670 89 5 41 chr13 8173898 8177063 -93696106 + L1PA7 LINE L1 3338 6469 0 280 75 132 0 chr13 8177655 8177708 -93695461 - L1MA4A LINE L1 -5 6298 6239 401 296 68 14 chr13 8178460 8178680 -93694489 - L1ME4a LINE L1 -296 5825 5594 1002 197 0 5 chr13 8180613 8180806 -93692363 + AluJo SINE Alu 121 312 0 2339 84 0 3 chr13 8181865 8182175 -93690994 + AluSc SINE Alu 1 309 0 2145 99 3 3 chr13 8183629 8183922 -93689247 + AluSx SINE Alu 1 293 -19 184 311 94 28 chr13 8188473 8188579 -93684590 - L2 LINE L2 -2 3311 3199 300 269 180 30 chr13 8189281 8189448 -93683721 + MIR SINE MIR 40 231 -31 352 227 118 36 chr13 8192831 8192941 -93680228 + MIR SINE MIR 16 134 -74 2267 62 0 29 chr13 8194043 8194349 -93678820 + AluY SINE Alu 1 297 -14 382 269 32 118 chr13 8194351 8194819 -93678350 - L1MC5 LINE L1 -32 7929 7502 592 224 8 8 chr13 8194826 8194974 -93678195 - FLAM_A SINE Alu 0 142 6 218 259 24 35 chr13 8195077 8195162 -93678007 - MIR SINE MIR -62 146 63 2068 95 0 11 chr13 8195532 8195778 -93677391 - AluSg1 SINE Alu 0 305 61 180 0 0 0 chr13 8195778 8195798 -93677371 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 2068 95 0 11 chr13 8195798 8195859 -93677310 - AluSg1 SINE Alu -244 61 1 231 36 0 0 chr13 8196382 8196410 -93676759 + (TTG)n Simple_repeat Simple_repeat 2 29 0 24 32 0 0 chr13 8196424 8196455 -93676714 + AT_rich Low_complexity Low_complexity 1 31 0 2326 48 3 0 chr13 8197411 8197701 -93675468 + AluY SINE Alu 1 291 -20 1864 203 60 21 chr13 8198605 8199039 -93674130 - MER39 LTR ERV1 0 707 257 298 136 17 71 chr13 8199012 8199113 -93674056 - MER39 LTR ERV1 -560 93 1 * 250 311 189 5 chr13 8199113 8199303 -93673866 - L2 LINE L2 -285 3028 2804 1018 184 0 6 chr13 8199476 8199650 -93673519 + FAM SINE Alu 1 173 -2 26 50 0 0 chr13 8200393 8200433 -93672736 + AT_rich Low_complexity Low_complexity 1 40 0 24 96 0 0 chr13 8200596 8200669 -93672500 + AT_rich Low_complexity Low_complexity 1 73 0 1816 136 0 14 chr13 8202704 8202999 -93670170 + AluJo SINE Alu 3 293 -19 2087 144 20 0 chr13 8203073 8203379 -93669790 + AluSx SINE Alu 1 312 0 262 306 48 43 chr13 8204187 8204373 -93668796 - MLT1L LTR MaLR 0 615 429 4612 133 22 13 chr13 8204812 8205587 -93667582 - L1MA9 LINE L1 0 6312 5531 21 36 0 0 chr13 8205784 8205812 -93667357 + AT_rich Low_complexity Low_complexity 1 28 0 806 238 161 45 chr13 8208937 8209383 -93663786 - L2 LINE L2 -1 3312 2815 3132 162 34 35 chr13 8210005 8210654 -93662515 - L1MD1 LINE L1 0 6636 5989 338 174 29 14 chr13 8210679 8210748 -93662421 - MLT1H LTR MaLR -54 495 426 505 113 12 0 chr13 8210766 8210846 -93662323 - L1MB7 LINE L1 -21 6163 6083 * 8449 219 46 81 chr13 8210839 8211440 -93661729 - L1MD1 LINE L1 -627 6009 5389 5257 9 0 0 chr13 8211440 8212019 -93661150 - L1PA2 LINE L1 -1 6154 5576 8449 219 46 81 chr13 8212019 8215056 -93658113 - L1MD1 LINE L1 -1247 5389 2504 5091 205 122 40 chr13 8215083 8215268 -93657901 - L1MD1 LINE L1 -4338 2202 2034 2121 127 0 13 chr13 8215268 8215444 -93657725 - AluSx SINE Alu -4 308 136 2283 110 0 0 chr13 8215444 8215735 -93657434 - AluSx SINE Alu -21 291 1 2121 127 0 13 chr13 8215735 8215866 -93657303 - AluSx SINE Alu -176 136 5 5091 205 122 40 chr13 8215866 8217336 -93655833 - L1MD1 LINE L1 -4506 2034 258 221 273 182 0 chr13 8218399 8218498 -93654671 + L2 LINE L2 3153 3269 -3 23 0 0 0 chr13 8219452 8219475 -93653694 + AT_rich Low_complexity Low_complexity 1 23 0 3967 185 51 30 chr13 8219617 8220747 -93652422 - L1MB5 LINE L1 -6 6168 5009 1196 154 24 12 chr13 8220751 8220997 -93652172 - L1MA7 LINE L1 0 6291 6043 2550 70 9 0 chr13 8220997 8221327 -93651842 + L1PA6 LINE L1 5821 6154 0 11831 165 43 9 chr13 8221327 8221600 -93651569 - L1MA7 LINE L1 -233 6058 5796 438 20 0 0 chr13 8221600 8221651 -93651518 + (TG)n Simple_repeat Simple_repeat 2 52 0 11831 165 43 9 chr13 8221651 8224404 -93648765 - L1MA7 LINE L1 -495 5796 2930 4683 224 31 27 chr13 8224405 8225680 -93647489 - L1MB5 LINE L1 -1130 5016 3737 307 289 110 46 chr13 8226330 8226676 -93646493 + L1MEd LINE L1 18 385 -5734 21 57 0 0 chr13 8227857 8227892 -93645277 + AT_rich Low_complexity Low_complexity 1 35 0 1335 280 112 27 chr13 8227909 8228501 -93644668 - MER115 DNA AcHobo -1 692 51 2258 110 3 0 chr13 8228535 8228835 -93644334 + AluSx SINE Alu 1 301 -11 233 351 30 8 chr13 8228911 8229042 -93644127 + MIR3 SINE MIR 64 197 -11 2077 168 37 0 chr13 8229896 8230270 -93642899 - MLT1B LTR MaLR 0 390 3 1928 149 7 14 chr13 8230403 8230699 -93642470 + AluJo SINE Alu 1 294 -18 248 308 17 0 chr13 8231382 8231499 -93641670 + G-rich Low_complexity Low_complexity 1 119 0 2290 117 3 0 chr13 8232144 8232453 -93640716 + AluSq SINE Alu 1 310 -3 438 229 208 0 chr13 8232870 8232982 -93640187 + MIR SINE MIR 31 118 -144 2192 187 17 17 chr13 8232982 8233441 -93639728 - LOR1b LTR ERV1 -2 459 1 438 229 208 0 chr13 8233441 8233520 -93639649 + MIR SINE MIR 118 262 0 191 368 80 6 chr13 8233522 8233685 -93639484 + MIR SINE MIR 66 240 -22 281 294 64 53 chr13 8235603 8235790 -93637379 - MIR3 SINE MIR -12 196 8 210 37 0 0 chr13 8236742 8236769 -93636400 + (TTCTG)n Simple_repeat Simple_repeat 3 29 0 764 196 82 23 chr13 8237472 8237691 -93635478 + MIR SINE MIR 31 262 0 2176 118 0 10 chr13 8237863 8238159 -93635010 + AluSx SINE Alu 1 293 -19 261 139 0 0 chr13 8243893 8243936 -93629233 + (A)n Simple_repeat Simple_repeat 1 43 0 195 289 0 125 chr13 8245897 8245951 -93627218 + L3 LINE CR1 1480 1539 -38 1071 197 51 91 chr13 8245951 8246124 -93627045 + MER58B DNA MER1_type 2 180 -2240 2458 53 3 41 chr13 8246124 8246443 -93626726 + AluY SINE Alu 1 307 -4 1071 197 51 91 chr13 8246443 8246579 -93626590 + MER58B DNA MER1_type 180 298 -2122 1689 157 3 39 chr13 8246579 8246891 -93626278 - AluJo SINE Alu -11 301 1 1071 197 51 91 chr13 8246891 8246930 -93626239 + MER58B DNA MER1_type 298 337 -4 195 289 0 125 chr13 8246930 8246979 -93626190 + L3 LINE CR1 1539 1570 -7 1962 134 13 10 chr13 8248497 8248804 -93624365 + AluSx SINE Alu 1 308 -4 2198 121 0 0 chr13 8250561 8250858 -93622311 + AluSx SINE Alu 1 297 -15 342 0 0 0 chr13 8252404 8252442 -93620727 + (CA)n Simple_repeat Simple_repeat 2 39 0 1321 163 65 0 chr13 8254045 8254142 -93619027 - AluJo SINE Alu -83 229 140 423 0 0 0 chr13 8254142 8254189 -93618980 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1321 163 65 0 chr13 8254189 8254306 -93618863 - AluJo SINE Alu -172 140 1 648 191 63 74 chr13 8254555 8254695 -93618474 + MER5A DNA MER1_type 1 140 -49 2065 146 0 0 chr13 8254695 8254997 -93618172 - AluJb SINE Alu -10 302 1 648 191 63 74 chr13 8254997 8255045 -93618124 + MER5A DNA MER1_type 140 187 -2 4059 128 44 23 chr13 8256098 8256216 -93616953 - L1MA4 LINE L1 -5 6295 6181 2216 115 3 0 chr13 8256216 8256520 -93616649 - AluSg SINE Alu -5 305 1 4059 128 44 23 chr13 8256520 8257086 -93616083 - L1MA4 LINE L1 -119 6181 5597 198 188 0 0 chr13 8257094 8257126 -93616043 - MIR SINE MIR -10 252 221 2280 95 0 7 chr13 8257587 8257881 -93615288 + AluSg SINE Alu 1 292 -18 394 271 54 8 chr13 8258880 8259009 -93614160 - L2 LINE L2 -52 3261 3127 354 366 21 7 chr13 8259557 8259699 -93613470 + MIR SINE MIR 22 165 -97 2342 162 80 2 chr13 8259891 8260329 -93612840 - LOR1a LTR ERV1 -25 472 1 2039 120 28 0 chr13 8260391 8260674 -93612495 - AluSq SINE Alu -22 291 1 584 128 43 11 chr13 8260706 8260800 -93612369 - LTR12 LTR ERV1 -229 485 389 329 147 59 88 chr13 8260800 8260902 -93612267 - LTR30 LTR ERV1 -79 643 379 528 206 39 25 chr13 8260903 8261104 -93612065 - LTR12 LTR ERV1 -429 1475 96 247 250 0 0 chr13 8261104 8261156 -93612013 - LTR30 LTR ERV1 -670 52 1 227 301 204 0 chr13 8261202 8261295 -93611874 - L2 LINE L2 -38 3234 3123 394 146 0 0 chr13 8261309 8261377 -93611792 - MLT1G1 LTR MaLR -6 589 476 794 194 0 8 chr13 8261388 8261522 -93611647 + FLAM_A SINE Alu 1 133 0 2667 161 60 39 chr13 8261531 8262101 -93611068 + L1MB3 LINE L1 5595 6176 -7 758 245 155 49 chr13 8262104 8262222 -93610947 - MLT1H1 LTR MaLR -55 540 436 1227 213 135 27 chr13 8262222 8262556 -93610613 + MLT1A2 LTR MaLR 1 370 -4 758 245 155 49 chr13 8262556 8262884 -93610285 - MLT1H1 LTR MaLR -159 436 3 2172 114 0 63 chr13 8263512 8263844 -93609325 - AluSq SINE Alu -2 311 1 1880 185 73 0 chr13 8264457 8264797 -93608372 - MER47A DNA MER2_type 0 366 2 225 280 75 65 chr13 8264869 8264962 -93608207 - L2 LINE L2 -33 3239 3146 2047 138 7 0 chr13 8265181 8265478 -93607691 + AluSq SINE Alu 1 299 -14 205 278 139 78 chr13 8265610 8265790 -93607379 - MIR SINE MIR -49 213 23 1647 170 0 55 chr13 8265813 8266125 -93607044 + AluJo SINE Alu 1 295 -17 432 228 304 35 chr13 8266391 8266887 -93606282 + LTR50 LTR ERVL 1 758 -37 233 176 77 66 chr13 8266892 8266983 -93606186 + L1ME LINE L1 5582 5673 -497 1442 103 0 10 chr13 8266989 8267216 -93605953 - AluSq SINE Alu 0 317 93 268 250 0 0 chr13 8267380 8267432 -93605737 + L1ME2 LINE L1 6097 6148 -16 1071 167 162 9 chr13 8267456 8267666 -93605503 + AluY SINE Alu 44 285 -26 1570 162 42 7 chr13 8267697 8267981 -93605188 + AluJb SINE Alu 1 294 -18 2515 80 0 0 chr13 8269406 8269717 -93603452 - AluSx SINE Alu -1 311 1 243 0 0 0 chr13 8269906 8269933 -93603236 + (GA)n Simple_repeat Simple_repeat 2 28 0 759 156 0 0 chr13 8271071 8271203 -93601966 + FRAM SINE Alu 38 169 0 433 235 154 15 chr13 8271999 8272135 -93601034 + MIR3 SINE MIR 34 188 -20 285 355 13 26 chr13 8272477 8272632 -93600537 - L2 LINE L2 -2 3311 3159 641 243 0 0 chr13 8272835 8272971 -93600198 - MIR SINE MIR -5 257 122 24 32 0 0 chr13 8274216 8274247 -93598922 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 8274618 8274649 -93598520 + AT_rich Low_complexity Low_complexity 1 31 0 3603 166 35 12 chr13 8275012 8275748 -93597421 + L1MB5 LINE L1 5223 5972 -212 764 171 8 16 chr13 8275748 8275871 -93597298 + FLAM_C SINE Alu 1 122 -21 984 157 120 0 chr13 8275882 8276073 -93597096 + L1MB5 LINE L1 5961 6174 0 637 159 146 13 chr13 8276290 8276441 -93596728 + MLT1B LTR MaLR 1 171 -219 191 268 0 163 chr13 8276756 8276830 -93596339 + L2 LINE L2 3179 3217 -96 1654 158 49 3 chr13 8276830 8277115 -93596054 - AluJo SINE Alu -14 298 1 191 268 0 163 chr13 8277115 8277193 -93595976 + L2 LINE L2 3217 3306 -7 * 306 163 0 0 chr13 8277163 8277212 -93595957 - L2 LINE L2 -1 3312 3264 1956 125 24 7 chr13 8277366 8277653 -93595516 + AluSx SINE Alu 10 301 -11 25 31 0 0 chr13 8278208 8278240 -93594929 + AT_rich Low_complexity Low_complexity 1 32 0 272 242 0 16 chr13 8279036 8279098 -93594071 - MIR SINE MIR -2 260 200 216 0 0 0 chr13 8279981 8280005 -93593164 + (ATG)n Simple_repeat Simple_repeat 2 25 0 2064 117 11 3 chr13 8280005 8280287 -93592882 - AluSx SINE Alu -28 284 1 1978 125 35 0 chr13 8283236 8283524 -93589645 + AluSg SINE Alu 1 298 -12 1973 127 0 3 chr13 8284009 8284334 -93588835 - AluSx SINE Alu 0 326 3 713 198 0 0 chr13 8284561 8284677 -93588492 - FLAM_A SINE Alu -19 123 8 214 313 214 10 chr13 8286750 8286942 -93586227 - L2 LINE L2 -1 3312 3082 1341 280 123 23 chr13 8289820 8290485 -93582684 + HAL1 LINE L1 1619 2350 -157 1219 169 9 144 chr13 8290791 8291139 -93582030 + AluJo SINE Alu 2 302 0 494 193 17 8 chr13 8292418 8292605 -93580564 - MER8 DNA MER2_type 0 239 8 1419 181 11 22 chr13 8293156 8293433 -93579736 + AluJb SINE Alu 33 306 -6 1559 170 30 22 chr13 8293657 8293927 -93579242 + AluSx SINE Alu 1 272 -40 22 35 0 0 chr13 8295065 8295094 -93578075 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 8295524 8295552 -93577617 + AT_rich Low_complexity Low_complexity 1 28 0 2426 72 0 28 chr13 8295864 8296184 -93576985 - AluY SINE Alu 0 311 1 514 238 159 9 chr13 8296185 8296399 -93576770 - L1M4 LINE L1 -3744 2402 2157 243 192 0 39 chr13 8296573 8296625 -93576544 - MER3 DNA MER1_type 0 209 160 2752 238 31 14 chr13 8297080 8297789 -93575380 + MER54A LTR ERVL 179 899 -2 435 216 22 3 chr13 8297790 8297895 -93575274 - L1ME1 LINE L1 -332 5834 5737 440 272 6 31 chr13 8297953 8298115 -93575054 - L1ME1 LINE L1 -413 5753 5596 201 39 0 0 chr13 8298121 8298147 -93575022 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1330 235 129 56 chr13 8298255 8298547 -93574622 - L1ME3A LINE L1 -135 6035 5766 1647 186 0 20 chr13 8298547 8298848 -93574321 - AluJo SINE Alu -16 296 2 1330 235 129 56 chr13 8298848 8299199 -93573970 - L1ME3A LINE L1 -404 5766 5319 736 245 108 58 chr13 8299240 8299446 -93573723 - L1ME3A LINE L1 -2828 3318 3124 1647 189 3 3 chr13 8299446 8299747 -93573422 - AluJb SINE Alu -11 301 1 736 245 108 58 chr13 8299747 8300079 -93573090 - L1ME3A LINE L1 -3022 3124 2753 736 197 0 8 chr13 8300538 8300665 -93572504 - FLAM_C SINE Alu -16 127 2 200 308 0 33 chr13 8300914 8301005 -93572164 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 2185 103 31 0 chr13 8301020 8301311 -93571858 - AluSc SINE Alu -9 300 1 357 168 107 92 chr13 8301315 8301446 -93571723 - L1MC4a LINE L1 -1869 5939 5807 1163 254 84 25 chr13 8301649 8302108 -93571061 + MLT1H1 LTR MaLR 2 452 -103 486 221 64 7 chr13 8302258 8302398 -93570771 - MIR SINE MIR -98 164 17 2132 113 0 0 chr13 8302540 8302833 -93570336 + AluJb SINE Alu 1 293 -19 1931 127 74 0 chr13 8302901 8303185 -93569984 + AluSx SINE Alu 3 307 -5 34 0 0 0 chr13 8303873 8303907 -93569262 + AT_rich Low_complexity Low_complexity 1 34 0 1630 190 80 131 chr13 8305144 8305579 -93567590 - L1MC4 LINE L1 -89 7953 7560 1875 136 26 19 chr13 8305579 8305887 -93567282 - AluJb SINE Alu -2 310 1 1630 190 80 131 chr13 8305887 8306092 -93567077 - L1MC4 LINE L1 -482 7560 7346 1594 180 0 33 chr13 8306716 8307016 -93566153 - AluJo SINE Alu -22 290 1 35 41 0 0 chr13 8309584 8309633 -93563536 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 8309691 8309712 -93563457 + AT_rich Low_complexity Low_complexity 1 21 0 829 315 15 11 chr13 8310677 8310937 -93562232 + MIR SINE MIR 1 261 -1 2194 138 0 0 chr13 8311131 8311435 -93561734 - AluSx SINE Alu -8 304 1 3186 182 35 12 chr13 8311706 8312542 -93560627 + L1MB4 LINE L1 5259 6179 -1 613 264 80 45 chr13 8312977 8313300 -93559869 - L1MEd LINE L1 -4873 1246 1003 2248 115 0 7 chr13 8313300 8313605 -93559564 - AluSx SINE Alu -9 303 1 613 264 80 45 chr13 8313605 8313684 -93559485 - L1MEd LINE L1 -5116 1003 928 195 129 0 0 chr13 8313684 8313715 -93559454 + (TA)n Simple_repeat Simple_repeat 1 31 0 333 224 24 0 chr13 8313717 8313802 -93559367 - L1MC4 LINE L1 -1342 6700 6614 1923 113 30 0 chr13 8313809 8314075 -93559094 - AluSx SINE Alu -38 274 1 280 394 83 19 chr13 8314311 8314674 -93558495 - L2 LINE L2 -4 3268 2883 25 51 0 0 chr13 8314759 8314798 -93558371 + AT_rich Low_complexity Low_complexity 1 39 0 237 132 0 0 chr13 8315314 8315352 -93557817 + (A)n Simple_repeat Simple_repeat 1 38 0 2307 105 0 0 chr13 8315387 8315683 -93557486 + AluSx SINE Alu 1 296 -16 201 147 0 0 chr13 8316865 8316899 -93556270 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 1508 190 28 24 chr13 8317177 8317243 -93555926 + MER45B DNA AcHobo 38 102 -938 2154 104 20 7 chr13 8317243 8317541 -93555628 - AluSq SINE Alu -11 302 1 1508 190 28 24 chr13 8317541 8317763 -93555406 + MER45B DNA AcHobo 102 327 -713 573 128 12 0 chr13 8317763 8317849 -93555320 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 8317849 8318037 -93555132 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 8318039 8318139 -93555030 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 8319454 8319498 -93553671 + A-rich Low_complexity Low_complexity 1 47 0 498 332 94 0 chr13 8319762 8319985 -93553184 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 8320098 8320136 -93553033 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 8320283 8320517 -93552652 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 8320517 8320813 -93552356 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 8320813 8321021 -93552148 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 8321051 8321364 -93551805 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 8322137 8322187 -93550982 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 8322569 8322865 -93550304 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 8323570 8323690 -93549479 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 8323690 8323942 -93549227 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 8323942 8324089 -93549080 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 8324755 8324934 -93548235 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 8324936 8325480 -93547689 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 8327504 8327583 -93545586 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 8328314 8328621 -93544548 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 8328920 8329092 -93544077 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 8329474 8329572 -93543597 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 8330467 8330513 -93542656 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 8333003 8333182 -93539987 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 8333196 8333316 -93539853 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 8333318 8333388 -93539781 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 8333510 8333818 -93539351 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 8334284 8334363 -93538806 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 8334444 8334649 -93538520 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 8334699 8334786 -93538383 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 8335630 8335675 -93537494 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 8337405 8337493 -93535676 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 8339508 8339746 -93533423 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 8340474 8340561 -93532608 - L2 LINE L2 0 3313 3204 194 361 74 9 chr13 8340617 8340725 -93532444 + L2 LINE L2 3118 3232 -40 25 51 0 0 chr13 8341557 8341596 -93531573 + AT_rich Low_complexity Low_complexity 1 39 0 2370 100 0 0 chr13 8341761 8342060 -93531109 + AluSc SINE Alu 1 299 -10 2157 146 17 14 chr13 8342220 8342577 -93530592 - L1MB7 LINE L1 -9 6175 5818 813 273 174 28 chr13 8342668 8343064 -93530105 - LTR16A1 LTR ERVL -1 456 3 2699 306 77 43 chr13 8343148 8345494 -93527675 - ERVL LTR ERVL -90 4906 2808 371 236 47 8 chr13 8345526 8345653 -93527516 - Charlie5 DNA MER1_type -85 2527 2396 23 33 0 0 chr13 8347376 8347406 -93525763 + AT_rich Low_complexity Low_complexity 1 30 0 2487 59 0 34 chr13 8347972 8348294 -93524875 - AluY SINE Alu 0 311 1 205 170 57 38 chr13 8348474 8348527 -93524642 + L2 LINE L2 3207 3260 -12 2139 142 3 0 chr13 8348763 8349073 -93524096 + AluSx SINE Alu 1 311 -1 467 209 35 61 chr13 8350027 8350142 -93523027 + FLAM_A SINE Alu 3 114 -19 21 0 0 0 chr13 8350145 8350166 -93523003 + AT_rich Low_complexity Low_complexity 1 21 0 284 312 72 0 chr13 8350714 8350839 -93522330 + L2 LINE L2 3168 3301 -12 1642 120 84 22 chr13 8350965 8351239 -93521930 + AluSq SINE Alu 1 291 -22 216 343 135 19 chr13 8351525 8351732 -93521437 + L2 LINE L2 2127 2357 -957 1128 276 138 29 chr13 8352698 8353248 -93519921 - MLT1L LTR MaLR -3 612 3 265 217 42 25 chr13 8353257 8353377 -93519792 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 26 0 0 0 chr13 8353415 8353441 -93519728 + AT_rich Low_complexity Low_complexity 1 26 0 1747 136 0 0 chr13 8353514 8353757 -93519412 + AluSx SINE Alu 1 243 -69 638 135 0 0 chr13 8353757 8353846 -93519323 - AluS SINE Alu -222 90 2 363 265 44 37 chr13 8353885 8354021 -93519148 + L1ME LINE L1 5672 5808 -313 1912 264 39 34 chr13 8354459 8355047 -93518122 - MLT1E LTR MaLR -2 591 1 410 308 65 55 chr13 8355924 8356232 -93516937 + MLT1J2 LTR MaLR 21 331 -119 1844 142 7 4 chr13 8356818 8357092 -93516077 + AluSq SINE Alu 31 305 -8 1893 164 0 3 chr13 8357417 8357731 -93515438 - AluJb SINE Alu 0 312 1 586 266 0 0 chr13 8358325 8358438 -93514731 - MER81 DNA DNA -1 113 1 1890 138 20 20 chr13 8358565 8358862 -93514307 + AluJo SINE Alu 1 297 -15 2409 53 0 0 chr13 8359805 8360130 -93513039 - AluY SINE Alu 0 325 1 691 312 118 30 chr13 8360621 8361265 -93511904 - L1ME4a LINE L1 -96 6025 5314 1726 228 64 67 chr13 8362152 8362842 -93510327 - L1ME4a LINE L1 -1099 5047 4360 * 7061 241 73 43 chr13 8362833 8363164 -93510005 - L1MEc LINE L1 -1542 4673 4353 1899 185 10 31 chr13 8363164 8363554 -93509615 - L1MB7 LINE L1 0 6184 5803 7061 241 73 43 chr13 8363554 8363798 -93509371 - L1MEc LINE L1 -1862 4353 4118 2036 100 57 0 chr13 8363798 8364077 -93509092 - AluY SINE Alu -16 295 1 7061 241 73 43 chr13 8364077 8365784 -93507385 - L1MEc LINE L1 -2097 4118 2463 599 169 16 0 chr13 8365784 8365908 -93507261 - L1MB2 LINE L1 -2 6169 6044 7061 241 73 43 chr13 8365908 8366070 -93507099 - L1MEc LINE L1 -3752 2463 2307 1808 161 0 7 chr13 8366070 8366356 -93506813 - AluSx SINE Alu -26 286 3 7061 241 73 43 chr13 8366356 8367849 -93505320 - L1MEc LINE L1 -3908 2307 656 740 132 8 0 chr13 8367881 8367898 -93505271 - L1MB7 LINE L1 -309 5875 5860 1626 119 5 0 chr13 8367898 8368117 -93505052 + AluSg/x SINE Alu 73 292 -20 740 132 8 0 chr13 8368117 8368233 -93504936 - L1MB7 LINE L1 -324 5860 5759 244 281 173 43 chr13 8369624 8369763 -93503406 - MER5B DNA MER1_type -1 177 21 300 207 12 73 chr13 8370553 8370635 -93502534 + MER5B DNA MER1_type 2 78 -100 440 199 53 53 chr13 8370666 8370757 -93502412 - MER5A DNA MER1_type -58 131 38 4269 119 39 2 chr13 8370757 8371369 -93501800 + MER41B LTR ERV1 1 635 0 440 199 53 53 chr13 8371369 8371408 -93501761 - MER5A DNA MER1_type -150 39 1 210 179 26 0 chr13 8371475 8371514 -93501655 + CT-rich Low_complexity Low_complexity 1 40 0 2263 97 3 0 chr13 8371839 8372129 -93501040 - AluSx SINE Alu -21 291 1 806 185 23 0 chr13 8372452 8372625 -93500544 + MER69 DNA AcHobo 2344 2520 -6 283 262 78 48 chr13 8373533 8373636 -93499533 - MIR SINE MIR -80 128 23 432 284 12 8 chr13 8373640 8373772 -93499397 + MIR SINE MIR 13 147 -62 4530 259 103 27 chr13 8374010 8375835 -93497334 - L2 LINE L2 -1 3312 1357 1447 176 68 3 chr13 8376681 8376988 -93496181 - L1MB3 LINE L1 0 6183 5857 2131 138 0 0 chr13 8377294 8377591 -93495578 + AluSx SINE Alu 1 297 -15 13984 132 23 121 chr13 8377601 8378493 -93494676 + L1P LINE L1 12 990 -5156 2463 28 42 0 chr13 8378493 8378782 -93494387 + AluY SINE Alu 2 302 -9 13984 132 23 121 chr13 8378782 8381027 -93492142 + L1P LINE L1 990 2842 -3304 812 87 0 0 chr13 8381027 8381130 -93492039 - AluSq/x SINE Alu -210 103 1 197 159 43 14 chr13 8381365 8381434 -93491735 + (TA)n Simple_repeat Simple_repeat 2 72 0 212 332 75 83 chr13 8381946 8382344 -93490825 + L2 LINE L2 2872 3266 -6 529 169 12 0 chr13 8382820 8382903 -93490266 + AluJ/FLAM SINE Alu 1 84 -228 794 249 98 87 chr13 8382908 8383358 -93489811 + L2 LINE L2 2691 3134 -179 207 0 0 0 chr13 8383358 8383381 -93489788 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2287 102 0 3 chr13 8383383 8383677 -93489492 - AluSq SINE Alu -20 293 1 794 249 98 87 chr13 8383677 8383818 -93489351 + L2 LINE L2 3134 3300 -13 280 293 9 66 chr13 8383896 8384002 -93489167 + MIR SINE MIR 8 107 -155 7853 41 2 2 chr13 8384201 8385167 -93488002 + L1PA5 LINE L1 5191 6153 -1 408 231 192 51 chr13 8385339 8385418 -93487751 - MIR SINE MIR -22 240 173 1857 143 32 0 chr13 8385418 8385698 -93487471 - AluJo SINE Alu -9 303 15 408 231 192 51 chr13 8385698 8385774 -93487395 - MIR SINE MIR -89 173 63 188 319 201 59 chr13 8386827 8387081 -93486088 - L2 LINE L2 0 3272 2983 1972 132 0 23 chr13 8387223 8387526 -93485643 + AluSx SINE Alu 1 296 -16 2109 110 48 0 chr13 8388418 8388709 -93484460 - AluSq SINE Alu -8 305 1 635 280 108 26 chr13 8388756 8388988 -93484181 - MIR SINE MIR -3 259 9 257 271 66 66 chr13 8389932 8390083 -93483086 - L2 LINE L2 -2 3311 3161 558 0 0 0 chr13 8390109 8390171 -93482998 + (TATTG)n Simple_repeat Simple_repeat 5 66 0 1974 154 3 0 chr13 8390171 8390456 -93482713 - AluSx SINE Alu -26 286 1 324 232 111 0 chr13 8390972 8391071 -93482098 - MIR3 SINE MIR -41 167 58 183 80 0 0 chr13 8391474 8391499 -93481670 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2346 81 0 3 chr13 8391722 8392018 -93481151 - AluY SINE Alu -16 295 1 1921 66 49 0 chr13 8393251 8393494 -93479675 + AluY SINE Alu 45 299 -12 513 315 81 20 chr13 8393651 8394024 -93479145 - L2 LINE L2 -184 3088 2680 2027 101 0 7 chr13 8395155 8395431 -93477738 + AluSc SINE Alu 1 274 -35 1329 158 0 0 chr13 8395673 8395876 -93477293 - AluSg/x SINE Alu -39 273 71 890 127 35 0 chr13 8395910 8396052 -93477117 - FRAM SINE Alu -4 172 26 1165 170 106 13 chr13 8396060 8396295 -93476874 + AluJo SINE Alu 46 302 -10 372 240 173 61 chr13 8396923 8397235 -93475934 + L1MEd LINE L1 598 944 -5175 1883 109 30 8 chr13 8397247 8397514 -93475655 + AluSx SINE Alu 2 274 -38 269 218 23 23 chr13 8397515 8397602 -93475567 + L1MC4 LINE L1 6616 6702 -1340 619 265 81 42 chr13 8397617 8397696 -93475473 + L1MEd LINE L1 928 1003 -5263 2298 115 0 6 chr13 8397696 8398009 -93475160 + AluSx SINE Alu 1 311 -1 619 265 81 42 chr13 8398009 8398331 -93474838 + L1MEd LINE L1 1003 1393 -4873 3287 179 31 5 chr13 8398766 8399379 -93473790 - L1MB4 LINE L1 -1 6179 5551 1049 172 45 32 chr13 8399381 8399602 -93473567 - L1MB4 LINE L1 -698 5482 5259 2194 138 0 0 chr13 8399873 8400177 -93472992 + AluSx SINE Alu 1 304 -8 829 315 15 11 chr13 8400371 8400631 -93472538 - MIR SINE MIR -1 261 1 475 257 29 15 chr13 8401786 8401922 -93471247 + MIR SINE MIR 32 169 -93 31 18 0 53 chr13 8402051 8402076 -93471093 + AT_rich Low_complexity Low_complexity 1 26 -28 1941 149 0 0 chr13 8402076 8402365 -93470804 - AluSx SINE Alu -23 289 1 31 18 0 53 chr13 8402365 8402396 -93470773 + AT_rich Low_complexity Low_complexity 26 54 0 2262 106 0 0 chr13 8402929 8403221 -93469948 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr13 8403394 8403423 -93469746 + AT_rich Low_complexity Low_complexity 1 29 0 2304 92 0 3 chr13 8403799 8404093 -93469076 - AluSx SINE Alu -19 293 1 288 320 86 68 chr13 8404245 8404642 -93468527 + L2 LINE L2 2829 3232 -40 219 109 22 22 chr13 8404798 8404844 -93468325 + A-rich Low_complexity Low_complexity 2 47 0 2359 45 3 58 chr13 8404918 8405231 -93467938 - AluY SINE Alu -15 296 1 198 0 0 0 chr13 8405264 8405286 -93467883 + (A)n Simple_repeat Simple_repeat 1 22 0 2269 100 0 7 chr13 8406286 8406595 -93466574 + AluSx SINE Alu 1 307 -5 827 211 11 16 chr13 8407463 8407653 -93465516 - MER5A DNA MER1_type 0 189 1 4405 228 69 20 chr13 8407827 8409412 -93463757 - L1MDa LINE L1 -4723 1817 17 24 0 0 0 chr13 8409527 8409551 -93463618 + AT_rich Low_complexity Low_complexity 1 24 0 2192 171 22 7 chr13 8410326 8410740 -93462429 + MSTB LTR MaLR 7 426 0 1813 255 35 31 chr13 8411431 8411952 -93461217 + L1M4 LINE L1 27 549 -5993 3481 238 94 29 chr13 8411981 8413462 -93459707 + L1M4 LINE L1 973 2550 -4096 312 346 19 25 chr13 8413462 8413624 -93459545 - L1M4 LINE L1 -1313 4833 4673 1890 223 71 30 chr13 8413624 8414185 -93458984 + MER74B LTR ERVL 29 612 -10 597 268 14 27 chr13 8414198 8414493 -93458676 - L1M4 LINE L1 -1500 4646 4356 599 176 0 0 chr13 8414529 8414620 -93458549 - FRAM SINE Alu -73 103 13 881 158 28 0 chr13 8414868 8415045 -93458124 - MER57B LTR ERV1 0 434 253 6335 162 20 8 chr13 8415045 8415837 -93457332 + L1PA16 LINE L1 3893 4674 -1492 1862 116 16 0 chr13 8415837 8416088 -93457081 + AluSg SINE Alu 44 298 -12 6335 162 20 8 chr13 8416088 8417530 -93455639 + L1PA16 LINE L1 4674 6157 -9 291 132 0 0 chr13 8417534 8417587 -93455582 - ERVL-B1 LTR ERVL -255 5509 5457 189 74 0 0 chr13 8417588 8417615 -93455554 + (CA)n Simple_repeat Simple_repeat 2 28 0 11263 152 19 15 chr13 8417615 8419581 -93453588 - ERVL-B1 LTR ERVL -346 5418 3444 5054 159 48 12 chr13 8419569 8419995 -93453174 - ERVL-B1 LTR ERVL -2965 2799 2390 * 2004 151 110 15 chr13 8419995 8420385 -93452784 + MSTA LTR MaLR 1 427 -1 5054 159 48 12 chr13 8420385 8420887 -93452282 - ERVL-B1 LTR ERVL -3374 2390 1837 6831 212 28 35 chr13 8420917 8421426 -93451743 - ERVL-B1 LTR ERVL -4139 1625 1114 984 171 411 10 chr13 8421426 8421730 -93451439 + MSTB LTR MaLR 1 426 0 6831 212 28 35 chr13 8421730 8422609 -93450560 - ERVL-B1 LTR ERVL -4650 1114 247 2037 129 46 35 chr13 8422609 8422980 -93450189 - THE1C LTR MaLR 0 375 1 6831 212 28 35 chr13 8422980 8423225 -93449944 - ERVL-B1 LTR ERVL -5517 247 2 259 92 0 123 chr13 8423226 8423291 -93449878 - MLT2B1 LTR ERVL 0 515 464 225 0 0 0 chr13 8423291 8423316 -93449853 + (TA)n Simple_repeat Simple_repeat 1 25 0 1235 219 99 56 chr13 8423341 8423806 -93449363 - MLT2B1 LTR ERVL -35 485 1 2488 85 0 0 chr13 8423950 8424257 -93448912 + AluY SINE Alu 1 307 -4 285 264 170 0 chr13 8424362 8424468 -93448701 + MIR SINE MIR 3 126 -136 632 147 0 53 chr13 8424515 8424705 -93448464 + (TA)n Simple_repeat Simple_repeat 1 180 0 2306 105 0 0 chr13 8425911 8426207 -93446962 - AluSx SINE Alu -16 296 1 228 135 0 0 chr13 8426242 8426279 -93446890 + (T)n Simple_repeat Simple_repeat 1 37 0 25 51 0 0 chr13 8426795 8426834 -93446335 + AT_rich Low_complexity Low_complexity 1 39 0 294 382 81 35 chr13 8426909 8427281 -93445888 + L2 LINE L2 2880 3268 -4 2231 116 0 0 chr13 8427517 8427820 -93445349 + AluSg SINE Alu 1 303 -7 252 0 0 0 chr13 8427836 8427864 -93445305 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 2139 125 3 0 chr13 8427867 8428155 -93445014 - AluSg SINE Alu -21 289 1 21 57 0 0 chr13 8428374 8428409 -93444760 + AT_rich Low_complexity Low_complexity 1 35 0 372 234 123 58 chr13 8429168 8429339 -93443830 - L2 LINE L2 0 3313 3132 2180 136 0 0 chr13 8429392 8429700 -93443469 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr13 8429776 8429804 -93443365 + AT_rich Low_complexity Low_complexity 1 28 0 726 181 0 0 chr13 8429806 8429933 -93443236 + FRAM SINE Alu 40 166 -10 359 321 82 60 chr13 8430722 8431086 -93442083 + L1ME4a LINE L1 2193 2564 -3582 234 236 121 18 chr13 8431181 8431346 -93441823 + L1ME4a LINE L1 2649 2830 -3316 989 116 9 116 chr13 8431675 8431900 -93441269 + L1MB8 LINE L1 5977 6177 -1 303 309 130 26 chr13 8431906 8432213 -93440956 + L1ME4a LINE L1 4994 5332 -814 330 327 153 14 chr13 8432260 8432483 -93440686 + L1ME4a LINE L1 5392 5645 -2163 702 179 11 11 chr13 8432526 8432705 -93440464 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 505 336 81 45 chr13 8433038 8433482 -93439687 + L1ME4a LINE L1 5624 6083 -38 2304 79 0 3 chr13 8433985 8434277 -93438892 + AluY SINE Alu 2 292 -19 819 178 0 0 chr13 8435035 8435164 -93438005 - FLAM_A SINE Alu -4 129 1 207 162 0 0 chr13 8435169 8435206 -93437963 + T-rich Low_complexity Low_complexity 1 37 0 1810 181 2 48 chr13 8435303 8435702 -93437467 - MLT1B LTR MaLR 0 390 10 394 333 57 18 chr13 8435784 8436348 -93436821 - L1M4 LINE L1 -1309 4837 4252 1487 244 56 19 chr13 8436649 8437076 -93436093 + MER74B LTR ERVL 58 500 -122 598 164 30 94 chr13 8437583 8437669 -93435500 - L1MC5 LINE L1 -48 7913 7823 2522 44 0 7 chr13 8437669 8437965 -93435204 + AluY SINE Alu 1 294 -17 598 164 30 94 chr13 8437965 8438079 -93435090 - L1MC5 LINE L1 -138 7823 7726 214 274 147 20 chr13 8438207 8438309 -93434860 + MIR SINE MIR 19 133 -75 344 353 16 8 chr13 8438458 8438580 -93434589 + MIR SINE MIR 22 144 -118 313 211 64 9 chr13 8438668 8438777 -93434392 + Charlie7 DNA MER1_type 65 179 -2433 333 313 53 27 chr13 8438794 8439166 -93434003 - L1MEd LINE L1 -4869 1250 895 8569 95 0 1 chr13 8439452 8440636 -93432533 + THE1B-int LTR MaLR 398 1580 0 2263 113 73 14 chr13 8440636 8440980 -93432189 + THE1B LTR MaLR 1 364 0 1699 181 0 0 chr13 8440980 8441312 -93431857 + L1PA13 LINE L1 4126 4457 -1689 1765 124 0 16 chr13 8441312 8441569 -93431600 + AluSx SINE Alu 35 287 -25 750 99 9 0 chr13 8441587 8441698 -93431471 + THE1B LTR MaLR 253 364 0 5914 114 9 3 chr13 8441698 8442860 -93430309 + L1PA13 LINE L1 4995 6163 0 1580 202 34 3 chr13 8443370 8443667 -93429502 + AluJo SINE Alu 1 306 -6 226 290 0 0 chr13 8443932 8443994 -93429175 + GA-rich Low_complexity Low_complexity 3 64 0 1520 184 52 66 chr13 8444064 8444609 -93428560 + MER67C LTR ERV1 1 504 -10 22 0 0 0 chr13 8445375 8445397 -93427772 + AT_rich Low_complexity Low_complexity 1 22 0 4350 165 37 26 chr13 8445472 8446731 -93426438 + L1MB4 LINE L1 4909 6176 -4 430 275 53 76 chr13 8446845 8447187 -93425982 + L1ME4a LINE L1 4869 5196 -950 2382 74 0 0 chr13 8447187 8447483 -93425686 - AluY SINE Alu -15 296 1 430 275 53 76 chr13 8447483 8447682 -93425487 + L1ME4a LINE L1 5196 5398 -748 292 327 13 13 chr13 8447872 8448028 -93425141 + L1ME4a LINE L1 5663 5818 -303 2048 106 4 0 chr13 8448344 8448618 -93424551 + AluSc SINE Alu 33 307 -2 304 238 0 38 chr13 8448618 8448687 -93424482 + L1ME4a LINE L1 5973 6040 -81 1689 74 0 52 chr13 8449009 8449239 -93423930 + AluSq SINE Alu 1 218 -95 555 172 125 8 chr13 8449524 8449652 -93423517 - MLT1B LTR MaLR -234 156 14 2245 105 0 0 chr13 8449726 8450021 -93423148 - AluSx SINE Alu -17 295 1 897 168 6 48 chr13 8450928 8451095 -93422074 - FRAM SINE Alu -17 159 1 1038 200 69 87 chr13 8451124 8451291 -93421878 + MLT1C LTR MaLR 7 176 -291 2055 122 0 3 chr13 8451291 8451585 -93421584 + AluSx SINE Alu 1 293 -19 1038 200 69 87 chr13 8451585 8451852 -93421317 + MLT1C LTR MaLR 176 433 -34 363 286 81 11 chr13 8451877 8452062 -93421107 + L2 LINE L2 1771 1968 -1346 204 272 201 41 chr13 8452216 8452484 -93420685 + L2 LINE L2 2341 2651 -663 2222 105 0 16 chr13 8452546 8452850 -93420319 + AluSx SINE Alu 3 301 -11 1656 151 15 48 chr13 8452857 8453189 -93419980 - MLT1A1 LTR MaLR -40 325 5 459 0 0 0 chr13 8453232 8453283 -93419886 + (TG)n Simple_repeat Simple_repeat 1 51 0 2138 132 14 3 chr13 8453283 8453646 -93419523 - L1MA9 LINE L1 -161 6151 5785 1579 265 32 2 chr13 8453892 8454303 -93418866 - MER70B LTR ERVL -152 426 4 1991 161 13 20 chr13 8454316 8454707 -93418462 - MER70B-int LTR ERVL 0 5023 4636 1106 207 33 15 chr13 8455579 8456015 -93417154 - MER70B-int LTR ERVL -1443 3580 3084 * 1364 163 112 14 chr13 8456012 8456307 -93416862 - MER70B-int LTR ERVL -2375 2648 2325 258 383 128 0 chr13 8456317 8456544 -93416625 - L1M3c LINE L1 -5884 257 2 612 278 98 7 chr13 8456885 8457162 -93416007 - L1MC4 LINE L1 -443 7599 7298 1759 179 28 0 chr13 8457171 8457461 -93415708 + AluJb SINE Alu 1 298 -14 319 219 29 0 chr13 8458492 8458597 -93414572 + (TA)n Simple_repeat Simple_repeat 1 108 0 252 0 0 0 chr13 8458632 8458660 -93414509 + (TA)n Simple_repeat Simple_repeat 2 29 0 2485 58 0 16 chr13 8458660 8458971 -93414198 - AluY SINE Alu -5 306 1 189 0 0 0 chr13 8459628 8459649 -93413520 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1578 183 0 21 chr13 8459652 8459942 -93413227 - AluJb SINE Alu -28 284 1 327 207 17 52 chr13 8459948 8460064 -93413105 + Charlie7 DNA MER1_type 2435 2546 -66 2336 62 7 3 chr13 8460105 8460395 -93412774 + AluSq SINE Alu 1 291 -22 327 276 26 79 chr13 8460533 8460685 -93412484 - L2 LINE L2 -7 3306 3163 216 293 17 0 chr13 8461162 8461220 -93411949 + (CG)n Simple_repeat Simple_repeat 2 60 0 2673 48 0 0 chr13 8461406 8461716 -93411453 - AluY SINE Alu 0 311 2 365 274 0 12 chr13 8462250 8462334 -93410835 - MIR SINE MIR -153 109 27 1020 139 13 0 chr13 8462378 8462529 -93410640 - FRAM SINE Alu -24 152 1 358 259 35 26 chr13 8462614 8462730 -93410439 + MIR3 SINE MIR 86 202 -6 2329 102 16 0 chr13 8463264 8463568 -93409601 - AluSc SINE Alu 0 309 1 2231 90 3 0 chr13 8463687 8463976 -93409193 + AluSx SINE Alu 1 290 -22 208 279 47 58 chr13 8464325 8464411 -93408758 - L3b LINE CR1 -98 1485 1401 1841 224 56 18 chr13 8464576 8465023 -93408146 - MLT1D LTR MaLR -21 484 21 323 344 51 6 chr13 8465056 8465213 -93407956 - L3 LINE CR1 -41 1536 1373 215 349 48 0 chr13 8465336 8465419 -93407750 - L2 LINE L2 -4 3268 3182 5286 266 104 20 chr13 8465925 8466075 -93407094 - L2 LINE L2 0 3313 3177 1893 140 90 39 chr13 8466075 8466432 -93406737 + THE1C LTR MaLR 1 375 0 5286 266 104 20 chr13 8466432 8467051 -93406118 - L2 LINE L2 -136 3177 2611 2708 196 70 33 chr13 8467051 8467621 -93405548 + MLT1E LTR MaLR 1 591 -2 5286 266 104 20 chr13 8467621 8468955 -93404214 - L2 LINE L2 -702 2611 1032 4520 141 63 41 chr13 8468961 8469242 -93403927 + L1MCa LINE L1 579 852 -5574 3440 77 18 14 chr13 8469242 8469684 -93403485 - MLT2A1 LTR ERVL 0 444 1 4520 141 63 41 chr13 8469684 8470313 -93402856 + L1MCa LINE L1 852 1509 -4917 274 298 36 12 chr13 8470313 8470397 -93402772 - MIR SINE MIR -171 91 6 201 129 0 0 chr13 8470430 8470461 -93402708 + (CA)n Simple_repeat Simple_repeat 2 32 0 1318 283 97 36 chr13 8470593 8471009 -93402160 + L1MEc LINE L1 1213 1602 -4794 1854 112 71 4 chr13 8471009 8471304 -93401865 + AluSx SINE Alu 1 313 0 1318 283 97 36 chr13 8471304 8471632 -93401537 + L1MEc LINE L1 1602 2003 -4393 3551 166 22 37 chr13 8471705 8472374 -93400795 + MER67B LTR ERV1 1 659 -2 911 97 0 0 chr13 8472384 8472497 -93400672 + AluY SINE Alu 1 113 -198 657 234 27 11 chr13 8472497 8472681 -93400488 + L1MEc LINE L1 2856 3042 -3173 195 184 0 0 chr13 8472681 8472719 -93400450 + (TA)n Simple_repeat Simple_repeat 2 39 0 237 174 0 0 chr13 8472756 8472802 -93400367 + LTR66 LTR ERVL 394 439 -171 * 1899 201 37 5 chr13 8472788 8473159 -93400010 - MLT2D LTR ERVL -40 480 1 3630 212 117 41 chr13 8473159 8474447 -93398722 + L1M3 LINE L1 4004 5406 -760 2210 137 5 67 chr13 8474447 8474833 -93398336 + MLT1A1 LTR MaLR 4 365 0 3630 212 117 41 chr13 8474833 8474966 -93398203 + L1M3 LINE L1 5406 5528 -638 1565 189 31 18 chr13 8474980 8475043 -93398126 + MER45B DNA AcHobo 38 99 -941 2246 99 20 3 chr13 8475043 8475345 -93397824 - AluSq SINE Alu -6 307 1 1565 189 31 18 chr13 8475345 8475567 -93397602 + MER45B DNA AcHobo 99 327 -713 573 128 12 0 chr13 8475567 8475653 -93397516 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 8475653 8475841 -93397328 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 8475843 8475943 -93397226 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 8477257 8477301 -93395868 + A-rich Low_complexity Low_complexity 1 47 0 474 336 94 0 chr13 8477565 8477788 -93395381 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 8477901 8477939 -93395230 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 8478086 8478320 -93394849 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 8478320 8478616 -93394553 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 8478616 8478824 -93394345 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 8478854 8479167 -93394002 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 8479940 8479990 -93393179 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 8480372 8480668 -93392501 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 8481373 8481493 -93391676 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 8481493 8481745 -93391424 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 8481745 8481892 -93391277 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 8482558 8482737 -93390432 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 8482739 8483283 -93389886 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 8485307 8485386 -93387783 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 8486117 8486424 -93386745 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 8486723 8486895 -93386274 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 8487277 8487375 -93385794 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 8488270 8488316 -93384853 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 8490806 8490985 -93382184 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 8490999 8491119 -93382050 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 8491121 8491191 -93381978 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 8491313 8491621 -93381548 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 8492087 8492166 -93381003 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 8492247 8492452 -93380717 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 8492502 8492589 -93380580 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 8493433 8493478 -93379691 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 8495208 8495296 -93377873 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 8497311 8497549 -93375620 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 8498279 8498366 -93374803 - L2 LINE L2 0 3313 3204 25 51 0 0 chr13 8499336 8499375 -93373794 + AT_rich Low_complexity Low_complexity 1 39 0 2383 97 0 0 chr13 8499539 8499838 -93373331 + AluSc SINE Alu 1 299 -10 2137 148 17 14 chr13 8499998 8500355 -93372814 - L1MB7 LINE L1 -9 6175 5818 800 275 174 28 chr13 8500446 8500842 -93372327 - LTR16A1 LTR ERVL -1 456 3 1989 319 59 18 chr13 8500926 8502249 -93370920 - HERV16 LTR ERVL -90 5344 3938 2591 317 37 9 chr13 8502314 8503298 -93369871 - HERV16 LTR ERVL -1926 3838 2828 371 236 47 8 chr13 8503304 8503431 -93369738 - Charlie5 DNA MER1_type -85 2527 2396 1698 309 61 19 chr13 8504264 8504536 -93368633 - HERV16 LTR ERVL -2923 2841 2582 420 139 0 70 chr13 8504536 8504622 -93368547 - MADE1 DNA Mariner 0 80 1 1698 309 61 19 chr13 8504622 8505106 -93368063 - HERV16 LTR ERVL -3182 2582 2053 * 2398 298 115 55 chr13 8505096 8505834 -93367335 - HERV16 LTR ERVL -3184 1812 1119 222 37 0 0 chr13 8505834 8505861 -93367308 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2398 298 115 55 chr13 8505861 8506832 -93366337 - HERV16 LTR ERVL -3877 1119 1 388 243 162 7 chr13 8506832 8506980 -93366189 - LTR16A1 LTR ERVL 0 457 287 769 188 5 124 chr13 8507386 8507520 -93365649 - MER5B DNA MER1_type 0 178 74 2300 107 3 0 chr13 8507520 8507818 -93365351 - AluSq SINE Alu -14 299 1 769 188 5 124 chr13 8507818 8507885 -93365284 - MER5B DNA MER1_type -104 74 1 216 270 135 18 chr13 8507886 8507997 -93365172 + L2 LINE L2 3190 3313 0 2304 94 0 23 chr13 8508283 8508591 -93364578 + AluSq SINE Alu 1 301 -12 823 123 0 72 chr13 8508604 8508742 -93364427 + FLAM_C SINE Alu 1 128 -15 2021 109 51 0 chr13 8509089 8509363 -93363806 - AluSg SINE Alu -22 288 1 2405 62 0 13 chr13 8509759 8510064 -93363105 - AluY SINE Alu -10 301 1 1749 196 0 7 chr13 8512529 8512835 -93360334 - AluJo SINE Alu -8 304 1 2318 116 0 0 chr13 8513358 8513669 -93359500 + AluSx SINE Alu 1 311 -1 2110 135 0 0 chr13 8513674 8513963 -93359206 + AluSx SINE Alu 3 291 -21 516 318 50 0 chr13 8514267 8514446 -93358723 - MIR SINE MIR -13 249 62 2343 95 0 0 chr13 8514778 8515074 -93358095 - AluSx SINE Alu -16 296 1 578 227 198 12 chr13 8515423 8515595 -93357574 + MIR SINE MIR 59 262 0 366 250 159 9 chr13 8515653 8515873 -93357296 - LTR16C LTR ERVL -16 475 223 2133 127 0 0 chr13 8515943 8516234 -93356935 + AluSx SINE Alu 1 291 -21 2035 136 27 0 chr13 8516288 8516589 -93356580 + AluSc SINE Alu 1 309 0 228 135 0 0 chr13 8516639 8516676 -93356493 + (CAT)n Simple_repeat Simple_repeat 2 38 0 319 292 42 0 chr13 8517102 8517198 -93355971 + MER5B DNA MER1_type 2 101 -77 3362 190 20 8 chr13 8517199 8517909 -93355260 - L1 LINE L1 -1120 5026 4309 273 160 0 0 chr13 8517909 8517959 -93355210 + Alu SINE Alu 259 308 0 430 240 33 8 chr13 8517990 8518111 -93355058 + L1MA9 LINE L1 6167 6290 -22 263 163 0 0 chr13 8518159 8518202 -93354967 + MER5B DNA MER1_type 136 178 0 4353 141 15 51 chr13 8518324 8519150 -93354019 + L1MA9 LINE L1 5021 5875 -437 2473 99 0 0 chr13 8519150 8519462 -93353707 + AluSq SINE Alu 1 312 -1 4353 141 15 51 chr13 8519462 8519709 -93353460 + L1MA9 LINE L1 5875 6141 -171 2327 92 0 3 chr13 8519709 8520012 -93353157 + AluSx SINE Alu 1 302 -10 4353 141 15 51 chr13 8520012 8520157 -93353012 + L1MA9 LINE L1 6141 6290 -22 2398 43 0 4 chr13 8520173 8520483 -93352686 + AluY SINE Alu 2 310 0 967 331 30 48 chr13 8521703 8522198 -93350971 + L2 LINE L2 994 1479 -1835 1121 256 59 22 chr13 8522212 8522690 -93350479 + MLT1H LTR MaLR 14 547 -2 222 333 21 10 chr13 8522710 8522806 -93350363 + L2 LINE L2 1493 1589 -1725 662 219 121 47 chr13 8523036 8523251 -93349918 - MIR SINE MIR -27 235 5 1196 283 95 96 chr13 8523265 8523384 -93349785 + L2 LINE L2 1802 1920 -1393 708 217 66 40 chr13 8523384 8523610 -93349559 + MER106A DNA MER1_type 1 232 -4 1196 283 95 96 chr13 8523610 8524378 -93348791 + L2 LINE L2 1920 2687 -626 1024 128 6 6 chr13 8524378 8524558 -93348611 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 189 0 0 0 chr13 8524563 8524584 -93348585 + (TCCA)n Simple_repeat Simple_repeat 3 23 0 1196 283 95 96 chr13 8524584 8525032 -93348137 + L2 LINE L2 2691 3135 -178 1991 139 9 22 chr13 8526631 8526947 -93346222 + AluJo SINE Alu 1 312 0 185 291 73 0 chr13 8527563 8527618 -93345551 - L2 LINE L2 0 3272 3214 198 118 0 0 chr13 8528788 8528822 -93344347 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 318 26 0 0 chr13 8532506 8532545 -93340624 + (TG)n Simple_repeat Simple_repeat 1 39 0 804 260 35 31 chr13 8532625 8532879 -93340290 - MIR SINE MIR 0 262 8 198 0 0 0 chr13 8533113 8533135 -93340034 + (TG)n Simple_repeat Simple_repeat 2 23 0 317 349 128 13 chr13 8533177 8533326 -93339843 + MIR3 SINE MIR 16 181 -27 1842 160 29 29 chr13 8533849 8534193 -93338976 - MER2 DNA MER2_type 0 344 1 423 320 79 57 chr13 8534399 8534627 -93338542 - L2 LINE L2 0 3272 3040 2863 142 43 13 chr13 8535923 8536457 -93336712 - L1MB7 LINE L1 -19 6165 5616 2502 55 3 0 chr13 8537746 8538053 -93335116 - AluY SINE Alu -3 308 1 2064 107 10 0 chr13 8538069 8538358 -93334811 - AluSq SINE Alu -21 292 1 2385 61 0 3 chr13 8538369 8538666 -93334503 - AluY SINE Alu -15 296 1 24 0 0 0 chr13 8538826 8538850 -93334319 + AT_rich Low_complexity Low_complexity 1 24 0 848 173 31 19 chr13 8538882 8538898 -93334271 - FRAM SINE Alu -137 165 151 180 0 0 0 chr13 8538898 8538918 -93334251 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 848 173 31 19 chr13 8538918 8539063 -93334106 - FRAM SINE Alu -151 151 2 363 216 11 0 chr13 8539145 8539233 -93333936 - L1MA4A LINE L1 -26 6277 6189 2960 160 14 10 chr13 8539239 8539821 -93333348 - L1MA4A LINE L1 -183 6120 5537 238 356 113 52 chr13 8539821 8540051 -93333118 - L2 LINE L2 -38 3234 2991 976 294 172 19 chr13 8540280 8540977 -93332192 - L2 LINE L2 -362 2952 2149 412 253 207 5 chr13 8542204 8542402 -93330767 - L1MC4a LINE L1 -1903 5905 5668 513 0 0 0 chr13 8542876 8542933 -93330236 + (CA)n Simple_repeat Simple_repeat 2 58 0 1726 181 0 0 chr13 8542948 8543219 -93329950 - AluJo SINE Alu -21 291 21 200 35 35 0 chr13 8544478 8544507 -93328662 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3486 169 100 43 chr13 8544661 8544731 -93328438 - L1MB8 LINE L1 0 6178 6113 2340 108 3 0 chr13 8544731 8545028 -93328141 + AluSq SINE Alu 1 298 -15 3486 169 100 43 chr13 8545028 8545861 -93327308 - L1MB8 LINE L1 -65 6113 5225 3728 109 51 149 chr13 8545861 8546147 -93327022 - Tigger3(Golem) DNA MER2_type 0 3029 2717 1425 194 14 25 chr13 8546147 8546431 -93326738 + AluJo SINE Alu 1 281 -31 3728 109 51 149 chr13 8546431 8546836 -93326333 - Tigger3(Golem) DNA MER2_type -312 2717 2274 505 149 11 11 chr13 8546836 8546923 -93326246 + AluJ/FLAM SINE Alu 1 87 -225 3728 109 51 149 chr13 8546923 8547537 -93325632 - Tigger3(Golem) DNA MER2_type -755 2274 1 1205 196 237 7 chr13 8547541 8547979 -93325190 - L1MB8 LINE L1 -937 5209 4671 21 0 0 0 chr13 8548161 8548182 -93324987 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 8548282 8548305 -93324864 + AT_rich Low_complexity Low_complexity 1 23 0 402 291 102 20 chr13 8548711 8548965 -93324204 - L1MC4a LINE L1 -439 5682 5408 2398 92 0 0 chr13 8549050 8549356 -93323813 - AluY SINE Alu -5 306 1 461 322 115 29 chr13 8549527 8550005 -93323164 - L1MC4a LINE L1 -1087 5059 4541 422 189 75 0 chr13 8550137 8550243 -93322926 - MER53 DNA DNA -75 114 1 2259 79 7 0 chr13 8550499 8550777 -93322392 - AluSc SINE Alu -20 289 10 214 278 12 33 chr13 8550994 8551089 -93322080 + MIR SINE MIR 49 144 -64 23 0 0 0 chr13 8551179 8551202 -93321967 + AT_rich Low_complexity Low_complexity 1 23 0 552 316 130 3 chr13 8552531 8552816 -93320353 + L3 LINE CR1 1251 1571 -6 256 297 0 62 chr13 8553081 8553209 -93319960 - L2 LINE L2 -829 2485 2366 239 308 15 0 chr13 8553311 8553376 -93319793 + L1MC4 LINE L1 6934 6999 -1043 1574 187 59 9 chr13 8553387 8553708 -93319461 - MER2 DNA MER2_type 0 345 9 1250 293 74 31 chr13 8553785 8554526 -93318643 + L1MC4 LINE L1 7109 7881 -161 258 32 0 0 chr13 8554594 8554625 -93318544 + (TG)n Simple_repeat Simple_repeat 2 32 0 526 224 28 47 chr13 8555101 8555326 -93317843 - L1M4 LINE L1 -681 5497 5275 1039 168 5 10 chr13 8555424 8555627 -93317542 + L1PB1 LINE L1 3 204 -6659 * 10058 154 40 44 chr13 8555618 8557953 -93315216 + L1PB1 LINE L1 1113 3455 -3412 2181 104 0 3 chr13 8557953 8558240 -93314929 + AluSc SINE Alu 1 286 -23 2257 99 7 3 chr13 8558243 8558547 -93314622 + AluSg SINE Alu 1 305 -5 10058 154 40 44 chr13 8558547 8559585 -93313584 + L1PB1 LINE L1 3457 4497 -2370 2087 112 25 0 chr13 8559585 8559862 -93313307 + AluSq SINE Alu 3 286 -27 262 0 0 0 chr13 8559862 8559891 -93313278 + (CAAAA)n Simple_repeat Simple_repeat 2 120 0 10058 154 40 44 chr13 8559891 8560521 -93312648 + L1PB1 LINE L1 4497 5128 -1739 243 88 0 0 chr13 8560521 8560555 -93312614 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 10058 154 40 44 chr13 8560555 8561913 -93311256 + L1PB1 LINE L1 5128 6505 -362 459 18 0 0 chr13 8561925 8561980 -93311189 - AluSg/x SINE Alu -43 266 212 2511 104 6 6 chr13 8561987 8562352 -93310817 + L1PB1 LINE L1 6501 6865 -2 401 251 134 40 chr13 8562487 8562590 -93310579 - L1M4 LINE L1 -901 5245 5153 2206 104 0 3 chr13 8562590 8562887 -93310282 - AluSg SINE Alu -14 296 1 401 251 134 40 chr13 8562887 8563058 -93310111 - L1M4 LINE L1 -993 5153 4945 780 197 45 155 chr13 8563064 8563400 -93309769 - L1M4 LINE L1 -1379 4767 4396 1630 145 80 0 chr13 8563400 8563662 -93309507 - AluSx SINE Alu -27 285 3 780 197 45 155 chr13 8563662 8563677 -93309492 - L1M4 LINE L1 -1750 4396 4381 2361 90 7 0 chr13 8563677 8563977 -93309192 - AluSc SINE Alu -7 302 1 780 197 45 155 chr13 8563977 8564178 -93308991 - L1M4 LINE L1 -1765 4381 4275 2299 81 0 0 chr13 8564179 8564474 -93308695 - AluY SINE Alu -16 295 1 210 37 0 0 chr13 8565427 8565454 -93307715 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2123 112 7 14 chr13 8565459 8565754 -93307415 + AluSg SINE Alu 1 293 -17 1473 138 53 0 chr13 8565760 8565985 -93307184 + Tigger3(Golem) DNA MER2_type 2791 3027 -2 279 272 103 70 chr13 8566110 8566411 -93306758 - HAL1 LINE L1 -4 2503 2193 797 256 30 0 chr13 8566419 8566618 -93306551 - HAL1 LINE L1 -677 1830 1626 477 176 33 0 chr13 8566898 8566989 -93306180 + MER5A DNA MER1_type 9 102 -87 612 308 26 51 chr13 8567059 8567332 -93305837 - MLT1J LTR MaLR -235 276 11 696 223 30 72 chr13 8567332 8567637 -93305532 - HAL1 LINE L1 -899 1608 1317 312 93 0 0 chr13 8567641 8567684 -93305485 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 299 241 90 24 chr13 8567732 8567898 -93305271 - HAL1 LINE L1 -1341 1166 990 279 27 41 178 chr13 8567909 8567940 -93305229 - L1MA8 LINE L1 -6 6285 6268 2025 117 13 10 chr13 8567940 8568240 -93304929 + AluSx SINE Alu 1 301 -11 279 27 41 178 chr13 8568240 8568281 -93304888 - L1MA8 LINE L1 -23 6268 6223 4048 154 70 14 chr13 8568305 8568748 -93304421 - L1MA8 LINE L1 -6 6294 5877 915 193 6 0 chr13 8568748 8568909 -93304260 - AluJo SINE Alu -4 298 137 4048 154 70 14 chr13 8568909 8569352 -93303817 - L1MA8 LINE L1 -423 5877 5322 2150 112 10 0 chr13 8569357 8569660 -93303509 - AluSc SINE Alu -3 306 1 353 296 112 34 chr13 8569713 8569919 -93303250 - HAL1 LINE L1 -1608 899 678 686 254 107 43 chr13 8569943 8570383 -93302786 - MER110A LTR ERV1 0 468 1 6620 257 102 69 chr13 8570525 8572389 -93300780 - MER110A-int LTR ERV1 -74 4573 2580 1239 171 42 114 chr13 8572389 8572792 -93300377 - MLT1A2 LTR MaLR 0 374 1 6620 257 102 69 chr13 8572792 8573767 -93299402 - MER110A-int LTR ERV1 -2067 2580 1639 1151 170 22 31 chr13 8573896 8574125 -93299044 - Tigger3(Golem) DNA MER2_type 0 3038 2812 280 277 15 0 chr13 8574100 8574165 -93299004 - Tigger3(Golem) DNA MER2_type -2963 66 1 * 255 272 0 87 chr13 8574166 8574269 -93298900 - MER110A-int LTR ERV1 -3170 1477 1384 307 301 43 21 chr13 8574328 8574421 -93298748 - MER110A-int LTR ERV1 -3295 1352 1258 768 217 133 6 chr13 8574449 8574615 -93298554 - MER58C DNA MER1_type 0 215 29 358 191 0 29 chr13 8574796 8574864 -93298305 - Tigger7 DNA MER2_type 0 2487 2422 1458 167 15 15 chr13 8574894 8575158 -93298011 - Tigger7 DNA MER2_type -2223 264 1 305 296 111 0 chr13 8575169 8575304 -93297865 - MER110A-int LTR ERV1 -3969 678 529 * 381 286 8 25 chr13 8575284 8575403 -93297766 - MER89-int LTR ERV1 -4124 2677 2561 261 333 35 0 chr13 8575624 8575711 -93297458 - MER89-int LTR ERV1 -4432 215 126 189 0 0 0 chr13 8575831 8575852 -93297317 + (T)n Simple_repeat Simple_repeat 1 21 0 392 339 32 32 chr13 8575952 8576321 -93296848 - MER89-int LTR ERV1 -4441 2360 1992 254 327 71 0 chr13 8577219 8577332 -93295837 - L2 LINE L2 -604 2710 2590 542 153 119 42 chr13 8577489 8577607 -93295562 - AluJo SINE Alu -172 130 4 575 230 52 110 chr13 8577783 8577923 -93295246 - L1MEc LINE L1 -3143 3072 2926 1635 116 8 27 chr13 8577923 8578181 -93294988 - AluSx SINE Alu -16 296 44 575 230 52 110 chr13 8578181 8578422 -93294747 - L1MEc LINE L1 -3289 2926 2713 295 236 9 27 chr13 8578467 8578577 -93294592 - L1MEc LINE L1 -3767 2448 2341 2176 112 0 7 chr13 8578600 8578905 -93294264 + AluSg1 SINE Alu 1 303 -6 324 222 204 57 chr13 8578997 8579173 -93293996 - L1MEc LINE L1 -4164 2232 2031 1483 167 3 97 chr13 8579255 8579585 -93293584 - AluJo SINE Alu -3 299 1 806 286 80 36 chr13 8579683 8580407 -93292762 - L1MEc LINE L1 -4616 1780 1025 2345 102 3 0 chr13 8581240 8581545 -93291624 - AluSx SINE Alu -6 306 1 1593 200 58 90 chr13 8581777 8582277 -93290892 + MLT1D LTR MaLR 22 505 0 806 227 62 0 chr13 8582737 8582931 -93290238 - MER3 DNA MER1_type -1 208 3 458 279 192 0 chr13 8583021 8583193 -93289976 + MIR SINE MIR 51 255 -7 414 329 37 0 chr13 8583300 8583464 -93289705 + L2 LINE L2 1728 1897 -1417 677 273 129 5 chr13 8583490 8583699 -93289470 + MIR SINE MIR 1 235 -27 2474 71 0 0 chr13 8583759 8584055 -93289114 - AluY SINE Alu -15 296 1 540 362 21 11 chr13 8584080 8584362 -93288807 + L2 LINE L2 1994 2278 -1036 1147 192 19 41 chr13 8584362 8584391 -93288778 - L1MB3 LINE L1 -24 6159 6131 1788 100 117 18 chr13 8584391 8584672 -93288497 - AluSg SINE Alu -1 309 1 1147 192 19 41 chr13 8584672 8584908 -93288261 - L1MB3 LINE L1 -52 6131 5900 2220 124 20 13 chr13 8584944 8585394 -93287775 - MER1A DNA MER1_type -2 527 1 225 274 16 0 chr13 8585902 8585964 -93287205 + CT-rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr13 8585964 8585988 -93287181 + AT_rich Low_complexity Low_complexity 1 24 0 501 300 125 82 chr13 8585997 8586580 -93286589 - MLT1L LTR MaLR -2 613 6 5298 72 0 27 chr13 8586626 8587333 -93285836 + LTR12 LTR ERV1 1 688 0 196 297 50 40 chr13 8587741 8587842 -93285327 + L2 LINE L2 3175 3276 -37 235 270 165 9 chr13 8588196 8588311 -93284858 - MIR SINE MIR -30 232 100 185 65 32 0 chr13 8590030 8590061 -93283108 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 226 158 8 chr13 8590236 8590369 -93282800 + MIR SINE MIR 2 154 -108 4318 156 228 42 chr13 8590419 8590682 -93282487 + L1MB3 LINE L1 21 234 -6150 1853 161 0 3 chr13 8590682 8590967 -93282202 + AluJb SINE Alu 1 284 -28 4318 156 228 42 chr13 8590967 8591828 -93281341 + L1MB3 LINE L1 234 1355 -5029 * 9340 213 55 34 chr13 8591820 8593791 -93279378 + L1MB3 LINE L1 2615 4543 -1876 2277 108 3 3 chr13 8593791 8594096 -93279073 + AluSq SINE Alu 1 305 -8 9340 213 55 34 chr13 8594096 8594723 -93278446 + L1MB3 LINE L1 4543 5155 -1264 1739 164 0 46 chr13 8594723 8595046 -93278123 + AluJo SINE Alu 1 308 -4 9340 213 55 34 chr13 8595046 8596171 -93276998 + L1MB3 LINE L1 5155 6418 -1 208 254 8 8 chr13 8596353 8596483 -93276686 + (TA)n Simple_repeat Simple_repeat 1 130 0 1169 140 68 162 chr13 8597735 8598148 -93275021 - MLT1A2 LTR MaLR 0 374 1 278 317 26 37 chr13 8598458 8598641 -93274528 - L1ME LINE L1 -482 5682 5499 224 240 20 0 chr13 8599711 8599761 -93273408 + L2 LINE L2 3225 3275 -38 430 324 77 12 chr13 8600049 8600296 -93272873 - MER90 LTR ERV1 -18 557 295 1090 284 66 58 chr13 8600807 8601380 -93271789 - MER110-int LTR ERV1 -1337 3310 2733 28 61 0 0 chr13 8601830 8601879 -93271290 + AT_rich Low_complexity Low_complexity 1 49 0 2170 125 0 0 chr13 8602141 8602445 -93270724 + AluSx SINE Alu 3 306 -6 27 62 0 0 chr13 8602473 8602521 -93270648 + AT_rich Low_complexity Low_complexity 1 48 0 609 259 52 42 chr13 8603157 8603443 -93269726 - HAL1 LINE L1 -974 1533 1245 598 310 51 16 chr13 8603562 8603817 -93269352 - HAL1 LINE L1 -2240 267 4 24 0 0 0 chr13 8603955 8603979 -93269190 + AT_rich Low_complexity Low_complexity 1 24 0 2284 102 0 3 chr13 8604085 8604399 -93268770 - AluSq SINE Alu 0 313 1 242 346 0 12 chr13 8604492 8604573 -93268596 + L2 LINE L2 2888 2967 -305 5779 168 90 33 chr13 8604635 8604805 -93268364 - L1MA3 LINE L1 -7 6298 6139 1964 136 17 0 chr13 8604805 8605100 -93268069 - AluSx SINE Alu -12 300 1 5779 168 90 33 chr13 8605100 8606836 -93266333 - L1MA3 LINE L1 -166 6139 4228 1888 107 0 0 chr13 8606836 8607078 -93266091 + AluSx SINE Alu 38 279 -33 5779 168 90 33 chr13 8607078 8607378 -93265791 - L1MA3 LINE L1 -2077 4228 3947 1005 154 35 0 chr13 8607497 8607666 -93265503 + Tigger4(Zombi) DNA MER2_type 5 179 -2552 * 2769 109 32 32 chr13 8607664 8607738 -93265431 + Tigger4(Zombi) DNA MER2_type 2265 2338 -393 2062 141 0 0 chr13 8607738 8608036 -93265133 - AluSq SINE Alu -15 298 1 2769 109 32 32 chr13 8608036 8608428 -93264741 + Tigger4(Zombi) DNA MER2_type 2337 2731 0 27 73 0 0 chr13 8609292 8609347 -93263822 + AT_rich Low_complexity Low_complexity 1 55 0 419 359 138 26 chr13 8609385 8609995 -93263174 + L2 LINE L2 1341 2018 -1296 370 310 139 66 chr13 8609997 8610500 -93262669 + L2 LINE L2 2171 2710 -604 306 0 0 0 chr13 8610517 8610551 -93262618 + (CAA)n Simple_repeat Simple_repeat 2 35 0 363 78 0 0 chr13 8610709 8610760 -93262409 + (CA)n Simple_repeat Simple_repeat 2 52 0 824 229 19 33 chr13 8610769 8610983 -93262186 + Charlie1 DNA MER1_type 10 220 -2541 553 189 53 8 chr13 8610979 8611111 -93262058 + Charlie1 DNA MER1_type 2622 2759 -2 * 2627 36 0 3 chr13 8611147 8611450 -93261719 - AluY SINE Alu -9 302 1 365 255 229 38 chr13 8611520 8611677 -93261492 + L2 LINE L2 3124 3310 -3 511 339 38 6 chr13 8611867 8612050 -93261119 + MIR3 SINE MIR 15 203 -5 28 86 0 0 chr13 8612079 8612149 -93261020 + AT_rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr13 8612549 8612573 -93260596 + AT_rich Low_complexity Low_complexity 1 24 0 558 217 159 16 chr13 8613376 8613565 -93259604 + L1ME3A LINE L1 5945 6160 -10 1188 243 122 21 chr13 8613670 8614196 -93258973 - L1M4 LINE L1 -945 5201 4623 341 57 0 19 chr13 8614292 8614345 -93258824 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr13 8614345 8614370 -93258799 + AT_rich Low_complexity Low_complexity 1 25 0 1096 256 83 2 chr13 8614378 8614789 -93258380 - L1M4 LINE L1 -1843 4303 3860 518 196 26 26 chr13 8614782 8614935 -93258234 - L1M4 LINE L1 -3206 2940 2788 * 493 237 7 40 chr13 8614933 8615085 -93258084 + L1MC5 LINE L1 7696 7842 -119 * 2301 105 0 0 chr13 8615727 8616021 -93257148 - AluSg SINE Alu -16 294 1 24 0 0 0 chr13 8616300 8616324 -93256845 + AT_rich Low_complexity Low_complexity 1 24 0 2239 81 21 0 chr13 8616525 8616809 -93256360 - AluSc SINE Alu -19 290 1 526 229 0 18 chr13 8617008 8617117 -93256052 + MIR SINE MIR 38 144 -118 233 189 0 0 chr13 8617117 8617154 -93256015 + L2 LINE L2 3220 3256 -16 1685 175 0 36 chr13 8617388 8617719 -93255450 - MLT1B LTR MaLR -2 388 70 * 4010 108 107 153 chr13 8617713 8618488 -93254681 - Tigger3b DNA MER2_type -1797 1232 423 2910 131 31 6 chr13 8618488 8618969 -93254200 - L1PA16 LINE L1 0 6166 5674 4010 108 107 153 chr13 8618969 8619074 -93254095 - Tigger3b DNA MER2_type -2606 423 315 1676 138 71 25 chr13 8619074 8619357 -93253812 + AluSx SINE Alu 1 296 -16 4010 108 107 153 chr13 8619357 8619779 -93253390 - Tigger3b DNA MER2_type -2714 315 1 502 132 13 0 chr13 8619779 8619855 -93253314 - MLT1B LTR MaLR -313 77 1 2137 113 3 7 chr13 8619978 8620279 -93252890 - AluSx SINE Alu -12 300 1 288 328 17 17 chr13 8620432 8620548 -93252621 - L2 LINE L2 0 3272 3157 655 303 29 29 chr13 8620657 8620901 -93252268 + MIR SINE MIR 10 253 -9 21 0 0 0 chr13 8621767 8621788 -93251381 + AT_rich Low_complexity Low_complexity 1 21 0 4008 174 38 38 chr13 8622088 8622896 -93250273 + L1MB4 LINE L1 5200 6012 -168 1713 120 59 115 chr13 8622896 8623253 -93249916 + MER1B DNA MER1_type 1 337 0 4008 174 38 38 chr13 8623253 8623423 -93249746 + L1MB4 LINE L1 6012 6180 0 21 57 0 0 chr13 8624053 8624088 -93249081 + AT_rich Low_complexity Low_complexity 1 35 0 259 285 57 55 chr13 8624196 8624327 -93248842 + MIR SINE MIR 51 183 -65 2063 141 20 3 chr13 8624453 8624794 -93248375 + MER7A DNA MER2_type 2 346 0 30 27 0 0 chr13 8625243 8625280 -93247889 + AT_rich Low_complexity Low_complexity 1 37 0 38 51 0 0 chr13 8626424 8626483 -93246686 + AT_rich Low_complexity Low_complexity 1 59 0 2399 77 0 3 chr13 8626522 8626832 -93246337 - AluY SINE Alu -2 309 1 24 53 0 0 chr13 8628509 8628547 -93244622 + AT_rich Low_complexity Low_complexity 1 38 0 2180 105 33 18 chr13 8628794 8629126 -93244043 + MER1B DNA MER1_type 1 337 0 2272 102 0 3 chr13 8629650 8629954 -93243215 + AluSg1 SINE Alu 1 303 -6 812 210 17 17 chr13 8630432 8630608 -93242561 + MER97c DNA MER1_type? 2 177 -913 2092 168 22 30 chr13 8631927 8632333 -93240836 - MLT2D LTR ERVL -8 406 4 2326 76 20 13 chr13 8632336 8632638 -93240531 + AluY SINE Alu 1 304 -7 1945 126 3 13 chr13 8632846 8633148 -93240021 + L1MB3 LINE L1 5533 5831 -352 1362 156 15 0 chr13 8633148 8633353 -93239816 + AluJo SINE Alu 86 293 -19 1683 96 123 15 chr13 8633373 8633697 -93239472 + L1MB3 LINE L1 5821 6179 -4 2186 134 0 3 chr13 8634024 8634331 -93238838 - AluSx SINE Alu -6 306 1 830 161 0 0 chr13 8634495 8634613 -93238556 + FLAM_C SINE Alu 7 124 -19 290 279 74 49 chr13 8634907 8635029 -93238140 + L2 LINE L2 3147 3271 -1 2099 168 6 6 chr13 8635654 8636017 -93237152 - MER47A DNA MER2_type -2 364 2 895 135 0 0 chr13 8636071 8636245 -93236924 - FLAM_C SINE Alu 0 174 1 2848 178 23 48 chr13 8636465 8636527 -93236642 - MLT2B3 LTR ERVL 0 554 492 494 70 14 0 chr13 8636527 8636598 -93236571 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 2848 178 23 48 chr13 8636598 8637103 -93236066 - MLT2B3 LTR ERVL -62 492 1 21 0 0 0 chr13 8637309 8637330 -93235839 + AT_rich Low_complexity Low_complexity 1 21 0 2198 82 0 24 chr13 8637370 8637661 -93235508 + AluY SINE Alu 16 299 -12 763 167 0 53 chr13 8637835 8637985 -93235184 - FLAM_C SINE Alu -1 142 1 235 309 21 53 chr13 8638386 8638480 -93234689 - MIR SINE MIR -76 132 42 522 230 86 89 chr13 8638480 8638737 -93234432 - MER112 DNA MER1_type 0 260 5 26 0 0 0 chr13 8640875 8640901 -93232268 + AT_rich Low_complexity Low_complexity 1 26 0 331 191 119 0 chr13 8641770 8641854 -93231315 + MIR SINE MIR 52 145 -117 385 331 8 16 chr13 8641952 8642073 -93231096 + L2 LINE L2 3194 3313 0 423 358 111 16 chr13 8642517 8642707 -93230462 + L2 LINE L2 2553 2760 -554 550 207 21 14 chr13 8642772 8642917 -93230252 - MER104 DNA Tc2 -32 148 3 594 251 72 32 chr13 8643119 8643398 -93229771 - L1M4 LINE L1 -2225 3921 3632 1211 143 4 78 chr13 8643464 8643694 -93229475 + AluJb SINE Alu 1 213 -99 2032 136 0 3 chr13 8644145 8644439 -93228730 - AluSx SINE Alu -19 293 1 1512 170 50 40 chr13 8644439 8644739 -93228430 - AluJb SINE Alu -9 303 1 290 348 0 0 chr13 8644944 8645033 -93228136 - L2 LINE L2 -568 2746 2658 228 213 11 96 chr13 8645578 8645672 -93227497 + MIR SINE MIR 66 151 -57 215 211 28 28 chr13 8646004 8646075 -93227094 + CT-rich Low_complexity Low_complexity 4 74 0 192 357 85 39 chr13 8648343 8648472 -93224697 - L2 LINE L2 -6 3266 3132 328 313 48 54 chr13 8648524 8648671 -93224498 + MIR3 SINE MIR 55 200 -8 1807 166 7 7 chr13 8649413 8649721 -93223448 + AluJb SINE Alu 3 310 -2 1166 237 177 28 chr13 8649737 8650319 -93222850 - HAL1b LINE L1 -76 1272 604 947 278 130 33 chr13 8650445 8651548 -93221621 - HAL1 LINE L1 -632 1875 586 434 311 90 0 chr13 8651676 8651843 -93221326 + L2 LINE L2 2946 3127 -186 336 164 44 0 chr13 8652174 8652264 -93220905 + L1MD3 LINE L1 7725 7992 -3 181 325 0 0 chr13 8652889 8652929 -93220240 - L2 LINE L2 -95 3177 3138 2194 108 10 0 chr13 8653122 8653418 -93219751 - AluSx SINE Alu -13 299 1 2209 124 0 0 chr13 8653674 8653981 -93219188 + AluSx SINE Alu 1 307 -5 777 184 0 0 chr13 8655239 8655364 -93217805 - FLAM_A SINE Alu -8 125 1 188 300 0 0 chr13 8656017 8656067 -93217102 - L2 LINE L2 -6 3266 3217 2239 109 0 3 chr13 8656283 8656585 -93216584 - AluSg SINE Alu -9 301 1 24 0 0 0 chr13 8656834 8656858 -93216311 + AT_rich Low_complexity Low_complexity 1 24 0 225 211 0 0 chr13 8657265 8657322 -93215847 + T-rich Low_complexity Low_complexity 1 57 0 442 308 33 0 chr13 8658377 8658497 -93214672 - L2 LINE L2 -1 3312 3189 1171 128 30 134 chr13 8659165 8659463 -93213706 + AluYb8 SINE Alu 38 304 -14 22 35 0 0 chr13 8660822 8660851 -93212318 + AT_rich Low_complexity Low_complexity 1 29 0 247 257 14 0 chr13 8662011 8662081 -93211088 + CT-rich Low_complexity Low_complexity 2 72 0 2193 101 28 0 chr13 8662653 8662939 -93210230 + AluSc SINE Alu 1 294 -15 323 336 39 0 chr13 8663167 8663295 -93209874 + MER5A DNA MER1_type 57 189 0 809 258 47 13 chr13 8663411 8663644 -93209525 - MIR SINE MIR 0 262 22 536 231 142 35 chr13 8663700 8663869 -93209300 + MER3 DNA MER1_type 1 187 -22 497 273 145 18 chr13 8665547 8665774 -93207395 + MIR SINE MIR 1 256 -6 343 268 255 6 chr13 8665778 8665935 -93207234 + MIR SINE MIR 1 196 -66 243 333 83 0 chr13 8665965 8666061 -93207108 - MIR SINE MIR -133 129 26 431 205 4 19 chr13 8666999 8667239 -93205930 + AluJo SINE Alu 1 297 -15 2194 117 10 0 chr13 8669610 8669919 -93203250 - AluSx SINE Alu 0 312 1 252 331 91 34 chr13 8670141 8670316 -93202853 + L2 LINE L2 2110 2294 -1020 306 260 82 34 chr13 8670335 8670481 -93202688 + L2 LINE L2 3073 3225 -88 631 279 205 52 chr13 8670497 8671269 -93201900 + L2 LINE L2 2156 3126 -187 2333 101 0 0 chr13 8671269 8671565 -93201604 + AluSx SINE Alu 1 296 -16 631 279 205 52 chr13 8671565 8671788 -93201381 + L2 LINE L2 3126 3313 0 269 239 42 0 chr13 8671788 8671859 -93201310 + L2 LINE L2 2301 2374 -940 502 223 7 0 chr13 8671873 8672012 -93201157 - AluJb SINE Alu 0 312 173 331 321 3 20 chr13 8672030 8672252 -93200917 + C-rich Low_complexity Low_complexity 1 218 0 1753 118 8 0 chr13 8672536 8672782 -93200387 - AluSx SINE Alu -64 248 1 858 129 0 0 chr13 8673017 8673133 -93200036 + FLAM_C SINE Alu 1 116 -17 306 0 0 0 chr13 8673135 8673169 -93200000 + (CA)n Simple_repeat Simple_repeat 2 35 0 1787 161 0 24 chr13 8673617 8673909 -93199260 - AluJo SINE Alu -26 286 2 436 308 86 69 chr13 8674340 8674608 -93198561 - L2 LINE L2 0 3313 3032 636 65 13 0 chr13 8674608 8674685 -93198484 - MADE1 DNA Mariner 0 80 3 436 308 86 69 chr13 8674685 8674894 -93198275 - L2 LINE L2 -281 3032 2828 666 263 82 73 chr13 8675133 8675707 -93197462 + L2 LINE L2 2621 3184 -129 187 279 221 19 chr13 8675755 8675859 -93197310 + MIR SINE MIR 28 152 -110 497 222 152 41 chr13 8675971 8676142 -93197027 - MIR SINE MIR -42 220 31 530 353 27 20 chr13 8676835 8677130 -93196039 + LTR16C LTR ERVL 193 489 -2 985 230 59 0 chr13 8677450 8677689 -93195480 + MERVL LTR ERVL 2427 2679 -2806 2835 206 180 9 chr13 8677697 8678474 -93194695 + L1M4c LINE L1 27 936 -5448 1250 115 6 0 chr13 8678474 8678648 -93194521 + AluSc SINE Alu 132 306 -3 776 211 66 9 chr13 8678655 8678868 -93194301 + L1M4c LINE L1 923 1147 -5237 * 1864 190 37 19 chr13 8678867 8679455 -93193714 + L1M4c LINE L1 2121 2716 -3666 2272 219 30 52 chr13 8679491 8680087 -93193082 + L1M4c LINE L1 4057 4636 -1746 2153 139 0 0 chr13 8680087 8680388 -93192781 + AluSx SINE Alu 1 301 -11 2272 219 30 52 chr13 8680388 8680500 -93192669 + L1M4c LINE L1 4636 4749 -1633 1160 203 61 12 chr13 8680593 8680839 -93192330 - AluJo SINE Alu -10 302 45 279 54 0 0 chr13 8680839 8680876 -93192293 + (TTA)n Simple_repeat Simple_repeat 1 37 0 366 194 0 0 chr13 8680876 8680948 -93192221 - AluSp/q SINE Alu 0 303 232 315 83 0 0 chr13 8680953 8681001 -93192168 - AluY SINE Alu 0 302 255 1702 67 0 5 chr13 8681001 8681210 -93191959 - AluY SINE Alu -103 208 1 1810 125 0 0 chr13 8681210 8681449 -93191720 - AluSx SINE Alu -72 240 1 361 239 110 31 chr13 8681451 8681614 -93191555 - L1MEc LINE L1 -5105 1291 1116 2228 293 74 22 chr13 8681630 8681691 -93191478 - L1MEc LINE L1 -5380 1016 960 14954 130 42 26 chr13 8681691 8683624 -93189545 + Tigger1 DNA MER2_type 1 1902 -516 2424 77 3 7 chr13 8683624 8683923 -93189246 - AluSx SINE Alu -12 300 3 14954 130 42 26 chr13 8683923 8684248 -93188921 + Tigger1 DNA MER2_type 1902 2301 -117 1536 165 16 0 chr13 8684248 8684496 -93188673 - AluJo SINE Alu -17 295 44 14954 130 42 26 chr13 8684496 8684616 -93188553 + Tigger1 DNA MER2_type 2301 2418 0 2228 293 74 22 chr13 8684616 8685486 -93187683 - L1MEc LINE L1 -5436 960 37 2474 68 0 13 chr13 8686166 8686473 -93186696 - AluSg1 SINE Alu -6 303 1 886 173 32 16 chr13 8686667 8686852 -93186317 - MER53 DNA DNA 0 189 2 390 129 0 0 chr13 8687965 8688027 -93185142 + (T)n Simple_repeat Simple_repeat 1 62 0 234 225 0 56 chr13 8688730 8688801 -93184368 + MIR3 SINE MIR 95 161 -47 187 314 14 14 chr13 8689136 8689206 -93183963 + L2 LINE L2 3184 3253 -19 379 303 73 6 chr13 8689277 8689442 -93183727 - MIR SINE MIR -71 191 16 259 257 46 46 chr13 8689545 8689654 -93183515 + MLT1L LTR MaLR 495 603 -12 247 286 18 0 chr13 8690881 8690937 -93182232 - L2 LINE L2 -18 3254 3198 308 224 153 10 chr13 8691502 8691600 -93181569 - MER5A DNA MER1_type -59 130 19 335 289 91 25 chr13 8691724 8691845 -93181324 + MIR3 SINE MIR 41 169 -39 576 256 58 0 chr13 8691923 8692082 -93181087 + FLAM_A SINE Alu 4 169 0 7642 205 28 23 chr13 8692084 8694213 -93178956 + L1M1 LINE L1 3071 5211 -2354 958 179 0 0 chr13 8694217 8694385 -93178784 + L1M1 LINE L1 5533 5700 -1865 * 4305 190 3 23 chr13 8694358 8695214 -93177955 + L1P LINE L1 4707 5545 -2020 266 286 59 59 chr13 8695528 8695647 -93177522 - MER5A DNA MER1_type -50 139 21 339 316 76 13 chr13 8695751 8695909 -93177260 + MIR3 SINE MIR 34 201 -7 402 224 147 39 chr13 8696161 8696317 -93176852 + MER5B DNA MER1_type 6 178 0 281 296 96 30 chr13 8696540 8696675 -93176494 + MIR SINE MIR 63 206 -56 3080 224 73 24 chr13 8696744 8698206 -93174963 + L1ME1 LINE L1 5967 7582 -3 695 342 121 35 chr13 8698208 8699225 -93173944 - L2 LINE L2 -13 3259 2148 6279 233 21 17 chr13 8699288 8701738 -93171431 + L1MA5A LINE L1 4 2615 -4174 * 8600 129 21 21 chr13 8701737 8703369 -93169800 + L1MA5A LINE L1 4505 6139 -800 1898 129 30 0 chr13 8703369 8703640 -93169529 + AluSx SINE Alu 1 279 -33 8600 129 21 21 chr13 8703640 8704436 -93168733 + L1MA5A LINE L1 6139 6934 -5 414 337 143 19 chr13 8704457 8705071 -93168098 - L2 LINE L2 -1239 2075 1386 229 73 49 0 chr13 8705221 8705262 -93167907 + AluSx SINE Alu 260 302 0 236 387 93 17 chr13 8705267 8705569 -93167600 - L2 LINE L2 -2671 643 319 617 288 80 74 chr13 8706232 8706597 -93166572 + L2 LINE L2 2897 3263 -9 320 93 0 19 chr13 8706599 8706653 -93166516 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 209 303 45 34 chr13 8706685 8706774 -93166395 + MIR SINE MIR 13 102 -160 2078 139 7 0 chr13 8707211 8707512 -93165657 - AluSx SINE Alu -9 303 1 1535 236 111 39 chr13 8708067 8708534 -93164635 + MLT1D LTR MaLR 1 501 -4 465 305 15 8 chr13 8708754 8708885 -93164284 - MIR SINE MIR -50 212 81 640 252 138 24 chr13 8708998 8709123 -93164046 + MIR SINE MIR 13 122 -140 201 39 0 0 chr13 8709123 8709149 -93164020 + (TGG)n Simple_repeat Simple_repeat 1 26 0 640 252 138 24 chr13 8709149 8709233 -93163936 + MIR SINE MIR 122 246 -16 237 303 0 0 chr13 8710120 8710186 -93162983 + T-rich Low_complexity Low_complexity 4 69 0 1550 221 65 3 chr13 8710740 8711296 -93161873 + L1MA10 LINE L1 5035 5609 -703 19670 164 22 54 chr13 8711302 8715624 -93157545 + L1MA3 LINE L1 11 3945 -3779 183 80 0 0 chr13 8715624 8715649 -93157520 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 19670 164 22 54 chr13 8715649 8719311 -93153858 + L1MA3 LINE L1 3945 7724 0 3404 166 16 55 chr13 8719311 8720075 -93153094 + L1MA10 LINE L1 5594 6332 -2 417 239 66 80 chr13 8720385 8720598 -93152571 + MER63A DNA MER1_type 1 210 0 247 298 97 0 chr13 8721820 8721944 -93151225 - MIR SINE MIR -19 243 108 189 107 0 0 chr13 8722008 8722036 -93151133 + (TG)n Simple_repeat Simple_repeat 1 28 0 304 355 43 7 chr13 8722044 8722182 -93150987 + L2 LINE L2 3129 3271 -1 393 224 66 0 chr13 8724060 8724212 -93148957 + (TA)n Simple_repeat Simple_repeat 2 163 0 2078 96 0 84 chr13 8724761 8725094 -93148075 - AluSg SINE Alu -5 305 1 663 347 89 44 chr13 8725167 8725740 -93147429 + L1M4 LINE L1 3390 3988 -2158 313 240 156 19 chr13 8726024 8726178 -93146991 + L1ME4a LINE L1 5933 6107 -14 2252 95 0 7 chr13 8726862 8727156 -93146013 - AluSx SINE Alu -20 292 1 467 247 7 91 chr13 8727864 8728018 -93145151 + MIR SINE MIR 1 141 -121 469 301 146 69 chr13 8728066 8728625 -93144544 + L2 LINE L2 2711 3312 -1 290 162 103 15 chr13 8728991 8729059 -93144110 + L1ME4a LINE L1 5574 5647 -474 373 315 103 14 chr13 8729067 8729280 -93143889 + L1ME4a LINE L1 5684 5915 -206 274 282 74 13 chr13 8729300 8729449 -93143720 + L1ME4a LINE L1 5964 6121 0 940 289 44 22 chr13 8729573 8729937 -93143232 + L1MC4a LINE L1 5512 5883 -1925 246 205 48 84 chr13 8731457 8731540 -93141629 + L2 LINE L2 3137 3216 -56 232 200 0 0 chr13 8732387 8732432 -93140737 - MER117 DNA MER1_type -152 45 1 265 360 0 0 chr13 8734025 8734114 -93139055 + L2 LINE L2 2658 2746 -568 1070 104 0 0 chr13 8784120 8784255 -93088914 + AluSg/x SINE Alu 156 290 -22 1896 134 0 24 chr13 8784280 8784570 -93088599 + AluSx SINE Alu 26 308 -4 463 278 203 41 chr13 8786311 8786549 -93086620 + L1ME4a LINE L1 5577 5775 -346 1940 119 59 7 chr13 8786549 8786835 -93086334 + AluSg SINE Alu 1 301 -9 463 278 203 41 chr13 8786835 8787068 -93086101 + L1ME4a LINE L1 5775 6117 -4 475 307 121 59 chr13 8787121 8787492 -93085677 + L3 LINE CR1 877 1270 -307 490 286 14 21 chr13 8787813 8787953 -93085216 - L2 LINE L2 0 3313 3175 502 222 24 16 chr13 8787956 8788082 -93085087 - MIR SINE MIR -46 216 90 695 269 82 26 chr13 8788953 8789221 -93083948 - L2 LINE L2 -4 3309 3027 373 230 87 24 chr13 8789259 8789385 -93083784 + MIR SINE MIR 61 194 -68 1646 108 0 5 chr13 8789450 8789664 -93083505 + AluSq SINE Alu 1 213 -100 382 94 166 1 chr13 8789668 8789755 -93083414 + L1MC2 LINE L1 6241 6343 -1 2110 148 0 0 chr13 8789792 8790102 -93083067 - AluSx SINE Alu -2 310 1 1402 92 0 0 chr13 8790924 8791097 -93082072 - AluSq SINE Alu -118 195 23 397 286 101 51 chr13 8791211 8791389 -93081780 - HAL1 LINE L1 -2286 221 35 313 250 0 34 chr13 8791389 8791477 -93081692 - LTR39 LTR ERV1 0 783 699 1160 203 18 31 chr13 8791540 8791826 -93081343 - LTR39 LTR ERV1 -501 282 1 637 76 0 0 chr13 8791842 8791921 -93081248 + AluS SINE Alu 2 80 -233 2471 84 3 0 chr13 8792338 8792648 -93080521 + AluY SINE Alu 1 311 0 21 0 0 0 chr13 8794438 8794459 -93078710 + AT_rich Low_complexity Low_complexity 1 21 0 262 260 135 31 chr13 8796458 8796554 -93076615 + L2 LINE L2 3137 3242 -30 192 121 0 190 chr13 8796850 8796908 -93076261 + L2 LINE L2 3267 3313 0 521 273 11 23 chr13 8797345 8797521 -93075648 - MER5B DNA MER1_type -3 175 2 664 274 148 56 chr13 8797671 8797826 -93075343 + L2 LINE L2 1556 1695 -1619 2232 110 3 13 chr13 8797826 8798127 -93075042 + AluSx SINE Alu 2 299 -13 664 274 148 56 chr13 8798127 8798580 -93074589 + L2 LINE L2 1695 2220 -1094 972 219 79 4 chr13 8798582 8798847 -93074322 + MER33 DNA MER1_type 1 285 -39 1909 160 7 114 chr13 8798917 8799373 -93073796 - MLT2D LTR ERVL 0 414 8 441 287 99 22 chr13 8799373 8799554 -93073615 + L2 LINE L2 2302 2496 -818 2039 165 39 31 chr13 8799558 8800103 -93073066 - MLT2A2 LTR ERVL 0 554 1 1036 291 121 14 chr13 8800105 8800534 -93072635 + L2 LINE L2 2498 2972 -342 1051 166 8 81 chr13 8800543 8800725 -93072444 - L1MA3 LINE L1 0 6305 6146 1849 191 3 0 chr13 8800725 8801029 -93072140 - AluJb SINE Alu -7 305 1 1051 166 8 81 chr13 8801029 8801105 -93072064 - L1MA3 LINE L1 -159 6146 6066 367 290 129 8 chr13 8801492 8801616 -93071553 + MIR SINE MIR 119 257 -5 248 347 60 40 chr13 8802110 8802309 -93070860 + L3 LINE CR1 64 266 -1311 202 350 52 0 chr13 8802442 8802539 -93070630 - MIR SINE MIR 0 262 161 428 271 0 8 chr13 8803106 8803224 -93069945 - LTR33 LTR ERVL -11 510 394 290 243 0 14 chr13 8803451 8803525 -93069644 - LTR33 LTR ERVL -448 73 1 2067 123 45 0 chr13 8803691 8803983 -93069186 + AluSx SINE Alu 1 305 -7 180 111 0 0 chr13 8803992 8804019 -93069150 + (A)n Simple_repeat Simple_repeat 1 27 0 443 244 36 48 chr13 8804019 8804187 -93068982 + Charlie8 DNA MER1_type 2 167 -2250 403 295 122 58 chr13 8804630 8804669 -93068500 + L2 LINE L2 2730 2765 -507 973 207 31 45 chr13 8804669 8804891 -93068278 + MER20 DNA MER1_type 1 219 0 403 295 122 58 chr13 8804891 8805303 -93067866 + L2 LINE L2 2765 3223 -49 235 362 80 55 chr13 8806610 8806809 -93066360 - MIR3 SINE MIR -3 205 2 520 278 112 18 chr13 8806847 8807083 -93066086 + MIR SINE MIR 9 255 -7 1895 180 103 5 chr13 8807333 8807711 -93065458 - Tigger7 DNA MER2_type -2065 422 8 543 168 0 0 chr13 8807808 8807903 -93065266 - AluSg/x SINE Alu -2 308 214 294 192 0 0 chr13 8807930 8807982 -93065187 + HERVK LTR ERVK 439 490 -6753 854 170 18 47 chr13 8807985 8808156 -93065013 + LTR5 LTR ERVK 804 969 0 1218 195 46 8 chr13 8808156 8808418 -93064751 + HERVK LTR ERVK 1 272 -6971 1187 157 0 0 chr13 8808400 8808598 -93064571 + HERVK LTR ERVK 423 620 -6623 * 2192 141 0 25 chr13 8808929 8809249 -93063920 + AluSx SINE Alu 1 312 0 1057 241 124 37 chr13 8809338 8809540 -93063629 + MLT1C LTR MaLR 1 184 -283 1901 161 0 0 chr13 8809540 8809825 -93063344 + AluJb SINE Alu 1 285 -27 1057 241 124 37 chr13 8809825 8810050 -93063119 + MLT1C LTR MaLR 184 465 -2 1740 126 0 4 chr13 8811007 8811253 -93061916 - AluSx SINE Alu -8 304 60 1706 94 76 10 chr13 8811253 8811579 -93061590 + LTR7 LTR ERV1 1 408 -42 465 94 0 0 chr13 8811591 8811655 -93061514 - AluJ/FLAM SINE Alu -247 65 2 447 355 6 6 chr13 8812623 8812789 -93060380 + MIR3 SINE MIR 37 202 -6 2129 113 3 7 chr13 8812968 8813261 -93059908 + AluSx SINE Alu 1 292 -20 2031 137 0 0 chr13 8817785 8818069 -93055100 + AluSx SINE Alu 11 294 -18 238 185 0 92 chr13 8818583 8818648 -93054521 + MST-int LTR MaLR 673 731 -920 346 155 31 210 chr13 8818735 8819026 -93054143 - L1MC4 LINE L1 0 8042 7804 639 240 91 68 chr13 8819419 8819758 -93053411 - MLT1G LTR MaLR -242 348 1 192 319 37 111 chr13 8819789 8819924 -93053245 + L2 LINE L2 3123 3247 -25 2331 107 10 0 chr13 8819944 8820253 -93052916 + AluSx SINE Alu 1 312 0 1321 227 40 73 chr13 8820442 8820922 -93052247 + MER101 LTR ERV1 11 474 0 2042 128 0 20 chr13 8821977 8822283 -93050886 + AluSx SINE Alu 1 300 -12 2642 37 0 0 chr13 8822548 8822843 -93050326 + AluY SINE Alu 1 295 -16 1601 197 0 3 chr13 8822857 8823152 -93050017 + AluJo SINE Alu 4 297 -15 1464 189 94 31 chr13 8823212 8823407 -93049762 - MER2 DNA MER2_type 0 345 121 2022 122 6 45 chr13 8823407 8823719 -93049450 - AluSx SINE Alu -12 300 1 1464 189 94 31 chr13 8823719 8823841 -93049328 - MER2 DNA MER2_type -224 121 8 2012 158 28 50 chr13 8823965 8824364 -93048805 - MLT1B LTR MaLR 0 390 1 311 0 26 0 chr13 8824541 8824580 -93048589 + (CA)n Simple_repeat Simple_repeat 2 41 0 1815 146 43 67 chr13 8824875 8825266 -93047903 + MLT1B LTR MaLR 9 390 0 387 348 42 70 chr13 8825767 8826126 -93047043 + L2 LINE L2 2906 3254 -18 209 237 0 0 chr13 8827213 8827251 -93045918 + L2 LINE L2 3215 3252 -20 296 260 207 12 chr13 8827703 8827872 -93045297 - MIR SINE MIR -12 250 49 220 238 53 19 chr13 8827940 8828047 -93045122 + MIR SINE MIR 83 202 -6 2067 218 98 33 chr13 8829085 8829687 -93043482 - LTR48B LTR ERV1 0 644 4 2546 53 7 3 chr13 8829710 8830010 -93043159 - AluY SINE Alu -10 301 1 1499 213 145 43 chr13 8830631 8831059 -93042110 + MLT2B1 LTR ERVL 3 386 -134 1951 160 71 0 chr13 8831059 8831384 -93041785 + MER7A DNA MER2_type 1 346 0 384 22 0 0 chr13 8831384 8831429 -93041740 + (TA)n Simple_repeat Simple_repeat 1 45 0 1499 213 145 43 chr13 8831429 8831469 -93041700 + MLT2B1 LTR ERVL 385 520 0 25 0 0 0 chr13 8831515 8831540 -93041629 + AT_rich Low_complexity Low_complexity 1 25 0 204 40 0 0 chr13 8831746 8831771 -93041398 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 8832380 8832401 -93040768 + AT_rich Low_complexity Low_complexity 1 21 0 975 169 0 0 chr13 8832984 8833138 -93040031 + FRAM SINE Alu 5 158 -8 2090 117 10 10 chr13 8833612 8833746 -93039423 + AluJb SINE Alu 1 134 -178 2204 110 7 3 chr13 8833746 8834037 -93039132 + AluSq SINE Alu 1 292 -21 2090 117 10 10 chr13 8834037 8834201 -93038968 + AluJb SINE Alu 133 299 -13 186 118 0 0 chr13 8834276 8834310 -93038859 + (TG)n Simple_repeat Simple_repeat 1 34 0 479 312 32 0 chr13 8834415 8834569 -93038600 + MIR SINE MIR 14 172 -90 322 272 126 0 chr13 8835285 8835388 -93037781 + MIR SINE MIR 66 181 -81 2132 125 32 35 chr13 8835680 8835724 -93037445 - L1MB2 LINE L1 -7 6164 6121 219 36 0 0 chr13 8835724 8835752 -93037417 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2415 61 0 0 chr13 8835752 8836032 -93037137 - AluY SINE Alu -31 280 1 2132 125 32 35 chr13 8836032 8836362 -93036807 - L1MB2 LINE L1 -48 6123 5790 666 133 71 0 chr13 8836550 8836663 -93036506 - L1MB2 LINE L1 -384 5799 5679 353 276 18 29 chr13 8839414 8839584 -93033585 + L1ME4a LINE L1 5954 6121 0 879 216 22 35 chr13 8839780 8840012 -93033157 + MIR SINE MIR 33 261 -1 890 132 0 22 chr13 8840116 8840252 -93032917 - FLAM_C SINE Alu 0 133 1 1552 205 10 3 chr13 8844085 8844373 -93028796 - AluJo SINE Alu -22 290 1 216 209 0 0 chr13 8844846 8844889 -93028280 + A-rich Low_complexity Low_complexity 2 44 0 2136 103 0 31 chr13 8844889 8845208 -93027961 + AluSx SINE Alu 1 309 -3 237 229 43 29 chr13 8845219 8845289 -93027880 - Charlie8 DNA MER1_type -2343 74 4 306 0 0 0 chr13 8845863 8845897 -93027272 + (CA)n Simple_repeat Simple_repeat 2 35 0 191 336 80 24 chr13 8845971 8846096 -93027073 + L2 LINE L2 2926 3057 -256 2251 123 0 0 chr13 8847440 8847749 -93025420 - AluSc SINE Alu 0 309 1 232 250 17 0 chr13 8848081 8848141 -93025028 + MIR SINE MIR 81 141 -121 184 268 18 0 chr13 8848965 8849021 -93024148 - MIR SINE MIR -61 147 91 2113 128 131 11 chr13 8849406 8849788 -93023381 + MSTA LTR MaLR 1 428 0 339 266 187 48 chr13 8849924 8850213 -93022956 - L2 LINE L2 -4 3268 2940 226 247 221 19 chr13 8850639 8850793 -93022376 + MIR SINE MIR 78 262 0 477 205 98 71 chr13 8851910 8852005 -93021164 + L1MC4 LINE L1 7813 7904 -138 2357 64 3 10 chr13 8852005 8852302 -93020867 + AluY SINE Alu 1 295 -16 477 205 98 71 chr13 8852302 8852430 -93020739 + L1MC4 LINE L1 7904 8042 0 211 74 0 0 chr13 8852453 8852480 -93020689 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 397 62 31 15 chr13 8852480 8852545 -93020624 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1622 116 0 4 chr13 8852645 8852877 -93020292 + AluY SINE Alu 66 296 -15 341 228 132 0 chr13 8852891 8853005 -93020164 + L1MC4 LINE L1 7914 8042 0 211 74 0 0 chr13 8853028 8853055 -93020114 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 703 66 19 9 chr13 8853055 8853161 -93020008 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1759 185 6 13 chr13 8853162 8853476 -93019693 - AluJo SINE Alu 0 312 1 3327 153 35 56 chr13 8853622 8854303 -93018866 - L1MC2 LINE L1 -377 5967 5301 521 281 63 74 chr13 8854416 8854878 -93018291 + MLT1J LTR MaLR 25 481 -30 197 369 29 39 chr13 8855065 8855168 -93018001 - L2 LINE L2 -33 3280 3179 242 175 79 0 chr13 8855975 8856038 -93017131 + CT-rich Low_complexity Low_complexity 4 71 0 21 71 0 0 chr13 8856688 8856730 -93016439 + GC_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr13 8856789 8856815 -93016354 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr13 8856984 8857015 -93016154 + GC_rich Low_complexity Low_complexity 1 31 0 2554 70 0 3 chr13 8858851 8859165 -93014004 - AluSq SINE Alu 0 313 1 235 343 111 0 chr13 8859556 8859655 -93013514 - L2 LINE L2 -12 3260 3151 239 327 136 32 chr13 8860093 8860344 -93012825 - L2 LINE L2 -414 2900 2624 1809 196 159 25 chr13 8860660 8861169 -93012000 + MER119 DNA MER1_type 7 583 0 223 338 31 12 chr13 8861197 8861357 -93011812 - L2 LINE L2 -1108 2206 2044 312 139 14 14 chr13 8862060 8862132 -93011037 + C-rich Low_complexity Low_complexity 1 72 0 254 0 83 0 chr13 8862146 8862182 -93010987 + T-rich Low_complexity Low_complexity 3 41 0 717 120 0 0 chr13 8862480 8862580 -93010589 - FLAM_C SINE Alu -12 131 32 1949 118 37 0 chr13 8862635 8862906 -93010263 + AluSx SINE Alu 2 282 -30 26 30 0 0 chr13 8863042 8863075 -93010094 + AT_rich Low_complexity Low_complexity 1 33 0 267 317 49 8 chr13 8863336 8863459 -93009710 - L2 LINE L2 -6 3307 3180 186 196 0 87 chr13 8863959 8864005 -93009164 + L2 LINE L2 3267 3308 -5 249 161 0 71 chr13 8864267 8864323 -93008846 - AluJo SINE Alu -165 137 86 * 259 167 21 0 chr13 8864292 8864340 -93008829 - Alu SINE Alu -20 282 234 614 167 0 0 chr13 8864343 8864451 -93008718 + AluSg/x SINE Alu 195 302 -7 272 268 180 10 chr13 8865911 8866105 -93007064 - MLT1J2 LTR MaLR -223 227 1 193 250 87 65 chr13 8866286 8866378 -93006791 + MER5C DNA MER1_type 1 94 -230 750 248 40 49 chr13 8866646 8866872 -93006297 + MER58A DNA MER1_type 1 224 0 29 0 0 0 chr13 8866944 8866973 -93006196 + AT_rich Low_complexity Low_complexity 1 29 0 210 258 0 0 chr13 8867024 8867086 -93006083 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 782 249 130 38 chr13 8867086 8867521 -93005648 - L2 LINE L2 -208 3105 2639 863 273 131 28 chr13 8868455 8869210 -93003959 + L1M4 LINE L1 2576 3408 -2738 * 1848 249 125 28 chr13 8869209 8869252 -93003917 - L1MC4a LINE L1 -1541 6267 6230 2268 90 0 7 chr13 8869252 8869551 -93003618 + AluSq SINE Alu 1 297 -16 1848 249 125 28 chr13 8869551 8870428 -93002741 - L1MC4a LINE L1 -1578 6230 5258 878 315 74 47 chr13 8870584 8871826 -93001343 - L1MC4a LINE L1 -1088 5058 3757 2044 106 47 0 chr13 8871826 8872101 -93001068 - AluSx SINE Alu -24 288 1 878 315 74 47 chr13 8872101 8872535 -93000634 - L1MC4a LINE L1 -2389 3757 3336 329 132 29 0 chr13 8872611 8872679 -93000490 - L1MB3 LINE L1 -1 6182 6113 435 76 0 0 chr13 8872684 8872750 -93000419 - L1 LINE L1 -966 5180 5115 617 62 0 0 chr13 8873123 8873203 -92999966 - AluS SINE Alu -233 80 1 233 298 53 7 chr13 8873203 8873354 -92999815 - L1P LINE L1 -2355 3791 3634 241 242 0 0 chr13 8873567 8873629 -92999540 - L1P LINE L1 -2741 3405 3344 372 103 29 0 chr13 8873712 8873780 -92999389 - L1MB3 LINE L1 -1 6182 6113 439 75 0 0 chr13 8873785 8873852 -92999317 - L1 LINE L1 -966 5180 5114 797 210 205 11 chr13 8874059 8874412 -92998757 - L1ME3A LINE L1 -24 6140 5724 490 332 34 12 chr13 8874821 8875099 -92998070 - L1MEc LINE L1 -3824 2398 2148 2350 84 0 0 chr13 8875188 8875486 -92997683 - AluY SINE Alu -13 298 1 312 263 111 47 chr13 8875600 8875790 -92997379 - HAL1b LINE L1 -501 847 646 482 213 142 0 chr13 8875809 8875936 -92997233 + MER105 DNA DNA 56 200 -4 621 293 47 89 chr13 8875947 8876656 -92996513 - HAL1b LINE L1 -744 1531 53 203 196 22 0 chr13 8876667 8876713 -92996456 + T-rich Low_complexity Low_complexity 3 49 0 317 308 58 0 chr13 8876779 8876899 -92996270 - MER5B DNA MER1_type -32 146 20 489 250 16 0 chr13 8877085 8877209 -92995960 - L1MD2 LINE L1 -18 6341 6216 858 176 72 21 chr13 8878082 8878275 -92994894 - L1MD2 LINE L1 -135 6224 6022 1002 204 43 88 chr13 8878275 8878673 -92994496 - L1M4 LINE L1 -1817 4329 3950 2094 184 76 4 chr13 8878686 8879158 -92994011 - MER73 LTR ERVL -12 632 127 434 151 143 8 chr13 8879210 8879336 -92993833 - L1M4 LINE L1 -2197 3949 3807 1448 174 8 11 chr13 8879338 8879602 -92993567 - AluJo SINE Alu 0 312 50 24 53 0 0 chr13 8879675 8879713 -92993456 + AT_rich Low_complexity Low_complexity 1 38 0 1496 99 12 62 chr13 8880244 8880486 -92992683 - MER30 DNA MER1_type 0 230 1 2456 83 3 3 chr13 8880962 8881274 -92991895 - AluSp SINE Alu 0 313 2 1818 185 3 7 chr13 8881279 8881582 -92991587 - AluJb SINE Alu -10 302 1 594 265 38 52 chr13 8882611 8882744 -92990425 + MIR SINE MIR 16 146 -116 2185 124 3 7 chr13 8882744 8883051 -92990118 + AluSx SINE Alu 1 306 -6 594 265 38 52 chr13 8883051 8883128 -92990041 + MIR SINE MIR 146 223 -39 250 255 202 11 chr13 8885910 8886004 -92987165 + L2 LINE L2 3151 3262 -10 387 309 75 15 chr13 8886609 8886998 -92986171 - L1M4 LINE L1 -1113 5033 4622 217 255 20 0 chr13 8887070 8887121 -92986048 + MIR SINE MIR 38 89 -119 1447 163 0 4 chr13 8887256 8887483 -92985686 + AluJb SINE Alu 86 311 -1 376 258 26 26 chr13 8889001 8889152 -92984017 - L1MD2 LINE L1 -2251 5557 5407 1893 158 21 0 chr13 8889154 8889445 -92983724 - AluJb SINE Alu -15 297 1 1978 254 106 40 chr13 8891060 8892198 -92980971 - L2 LINE L2 -1 3312 2102 1128 201 51 56 chr13 8892706 8893079 -92980090 - MLT1A2 LTR MaLR 0 374 4 427 275 77 34 chr13 8893902 8894109 -92979060 + L2 LINE L2 3098 3313 0 324 289 62 31 chr13 8894132 8894357 -92978812 - L1ME4a LINE L1 -238 5883 5652 21 36 0 0 chr13 8894449 8894477 -92978692 + AT_rich Low_complexity Low_complexity 1 28 0 246 312 65 39 chr13 8894661 8894815 -92978354 + L2 LINE L2 2326 2483 -831 204 357 31 10 chr13 8895417 8895515 -92977654 + L2 LINE L2 3173 3272 0 247 281 184 0 chr13 8895567 8895681 -92977488 - L1MCc LINE L1 -4638 2484 2350 * 3636 214 59 24 chr13 8895673 8896720 -92976449 - L1MD2 LINE L1 -2 6357 5274 728 264 107 63 chr13 8896731 8897479 -92975690 - L1MCc LINE L1 -4778 2344 1630 2051 130 10 7 chr13 8897479 8897786 -92975383 - AluSx SINE Alu -4 308 1 234 0 0 0 chr13 8897796 8897822 -92975347 + (TTG)n Simple_repeat Simple_repeat 2 27 0 728 264 107 63 chr13 8897822 8897836 -92975333 - L1MCc LINE L1 -5500 1622 1610 7256 26 25 0 chr13 8897836 8898808 -92974361 - L1PA4 LINE L1 -3 6152 5158 728 264 107 63 chr13 8898808 8898982 -92974187 - L1MCc LINE L1 -5512 1610 1129 1952 125 32 0 chr13 8899234 8899513 -92973656 - AluSx SINE Alu -24 288 1 1356 118 5 5 chr13 8899523 8899726 -92973443 - AluSg/x SINE Alu 0 312 110 505 284 16 37 chr13 8899820 8900063 -92973106 - L1MCc LINE L1 -5972 451 214 898 236 26 15 chr13 8900607 8900802 -92972367 + MIR SINE MIR 12 208 -54 285 342 51 8 chr13 8902426 8902575 -92970594 - MIR3 SINE MIR -67 141 3 703 163 16 31 chr13 8903897 8904026 -92969143 + FLAM_C SINE Alu 1 127 -16 278 231 82 82 chr13 8904469 8904616 -92968553 + MIR SINE MIR 66 212 -50 233 273 18 0 chr13 8905884 8905939 -92967230 - L2 LINE L2 -9 3304 3249 1717 181 6 22 chr13 8906644 8906673 -92966496 - AluJb SINE Alu -2 310 282 408 20 0 0 chr13 8906673 8906722 -92966447 + (TG)n Simple_repeat Simple_repeat 1 49 0 1717 181 6 22 chr13 8906722 8907007 -92966162 - AluJb SINE Alu -30 282 1 1481 129 63 94 chr13 8907178 8907528 -92965641 + MER44D DNA MER2_type 1 609 0 1403 189 120 53 chr13 8907634 8907979 -92965190 - LTR54B LTR ERV1 -1 497 114 1820 175 0 13 chr13 8907979 8908287 -92964882 - AluJb SINE Alu -8 304 1 1403 189 120 53 chr13 8908287 8908391 -92964778 - LTR54B LTR ERV1 -384 114 18 180 261 99 27 chr13 8908812 8908923 -92964246 + L2 LINE L2 3113 3231 -82 693 209 61 10 chr13 8910260 8910456 -92962713 - MER3 DNA MER1_type -2 207 2 745 149 15 30 chr13 8911388 8911522 -92961647 - FLAM_C SINE Alu 0 133 2 265 282 208 7 chr13 8911549 8911698 -92961471 + MIR SINE MIR 58 236 -26 253 367 66 53 chr13 8912389 8912615 -92960554 + L2 LINE L2 3044 3272 0 47 44 0 0 chr13 8913491 8913559 -92959610 + AT_rich Low_complexity Low_complexity 1 68 0 2130 104 3 17 chr13 8913839 8914137 -92959032 + AluY SINE Alu 1 294 -17 208 204 114 0 chr13 8914304 8914348 -92958821 + MIR SINE MIR 94 142 -66 701 229 64 4 chr13 8914667 8914903 -92958266 + L1M4 LINE L1 2786 3035 -3111 2241 109 0 13 chr13 8915645 8915958 -92957211 - AluSc SINE Alu 0 309 1 458 184 0 18 chr13 8915968 8915980 -92957189 - L1MA10 LINE L1 -2 6332 6321 3464 206 54 12 chr13 8915980 8916877 -92956292 - L1ME1 LINE L1 -5 6161 5229 759 216 83 10 chr13 8917868 8918072 -92955097 + MIR SINE MIR 13 231 -31 1826 136 38 35 chr13 8918080 8918447 -92954722 + THE1C LTR MaLR 6 373 -2 387 245 81 14 chr13 8918994 8919156 -92954013 - L1ME LINE L1 -396 5766 5587 23 0 0 0 chr13 8920752 8920775 -92952394 + AT_rich Low_complexity Low_complexity 1 23 0 207 384 81 0 chr13 8921535 8921621 -92951548 + L2 LINE L2 3102 3194 -78 508 249 40 90 chr13 8921747 8921948 -92951221 - MIR3 SINE MIR -15 193 3 1187 123 0 0 chr13 8922977 8923139 -92950030 + AluSg/x SINE Alu 132 293 -17 2617 250 91 53 chr13 8923242 8925574 -92947595 + L1MCc LINE L1 17 2258 -4683 2735 141 16 87 chr13 8925574 8926128 -92947041 - MLT2B2 LTR ERVL 0 515 1 2617 250 91 53 chr13 8926128 8926376 -92946793 + L1MCc LINE L1 2258 2495 -4446 2772 121 19 23 chr13 8926376 8926863 -92946306 - MER31A LTR ERV1 0 485 1 2617 250 91 53 chr13 8926863 8927292 -92945877 + L1MCc LINE L1 2495 3355 -3586 28 0 0 0 chr13 8927571 8927599 -92945570 + AT_rich Low_complexity Low_complexity 1 28 0 202 211 0 0 chr13 8928076 8928114 -92945055 + (TATG)n Simple_repeat Simple_repeat 4 41 0 1067 31 0 0 chr13 8928121 8928251 -92944918 + L1PA2 LINE L1 6026 6155 0 189 0 0 0 chr13 8928259 8928280 -92944889 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 445 316 72 35 chr13 8929642 8930184 -92942985 - HERV16 LTR ERVL -1494 3502 3158 36 23 0 0 chr13 8930327 8930370 -92942799 + AT_rich Low_complexity Low_complexity 1 43 0 36619 81 6 11 chr13 8930512 8933548 -92939621 - L1PA6 LINE L1 -1 6153 3103 2392 91 0 3 chr13 8933548 8933855 -92939314 - AluSp SINE Alu -7 306 1 36619 81 6 11 chr13 8933855 8936999 -92936170 - L1PA6 LINE L1 -3051 3103 11 705 342 47 2 chr13 8937024 8937433 -92935736 - HERV16 LTR ERVL -2564 3200 2774 282 314 58 35 chr13 8938252 8938478 -92934691 - LTR16B LTR ERVL -17 447 217 1468 151 177 57 chr13 8939096 8939481 -92933688 + MSTB1 LTR MaLR 2 432 0 206 280 96 56 chr13 8939768 8939893 -92933276 - L2 LINE L2 -7 3265 3136 1764 184 33 29 chr13 8940048 8940500 -92932669 - MER74A LTR ERVL -30 528 75 677 150 92 0 chr13 8940490 8940610 -92932559 - MSTB LTR MaLR -294 132 2 * 2161 114 7 16 chr13 8940750 8941057 -92932112 - AluSx SINE Alu -7 305 2 910 257 139 43 chr13 8941101 8941661 -92931508 - HAL1 LINE L1 -1628 879 266 3075 143 10 0 chr13 8941751 8942240 -92930929 - LOR1a LTR ERV1 -3 494 1 285 233 17 0 chr13 8943144 8943204 -92929965 + L2 LINE L2 3251 3311 -2 1903 208 36 32 chr13 8944226 8944722 -92928447 + MLT1D LTR MaLR 1 498 -7 270 209 70 12 chr13 8944830 8944916 -92928253 - MER5B DNA MER1_type 0 178 88 1645 218 11 6 chr13 8945432 8945795 -92927374 + MLT1A1 LTR MaLR 1 365 0 284 265 5 83 chr13 8945987 8946191 -92926978 + L1MCc LINE L1 1283 1470 -4953 491 243 58 12 chr13 8946192 8946365 -92926804 + L1MCa LINE L1 539 719 -6222 22 0 0 0 chr13 8946397 8946419 -92926750 + AT_rich Low_complexity Low_complexity 1 22 0 244 227 72 0 chr13 8948314 8948411 -92924758 - L1ME LINE L1 -284 5837 5734 272 315 30 39 chr13 8949533 8949765 -92923404 + L1MCa LINE L1 1238 1467 -4956 * 3373 221 88 80 chr13 8949749 8950152 -92923017 + L1MCa LINE L1 6 404 -5920 1903 109 44 4 chr13 8950152 8950427 -92922742 + AluSg1 SINE Alu 3 288 -21 3373 221 88 80 chr13 8950427 8951432 -92921737 + L1MCa LINE L1 404 1489 -4835 1339 201 23 0 chr13 8951432 8951696 -92921473 + AluSx SINE Alu 42 311 -1 1518 252 139 22 chr13 8951708 8953243 -92919926 + L1MCa LINE L1 1595 3330 -3096 2006 302 158 25 chr13 8953243 8954466 -92918703 + L2 LINE L2 1223 2608 -706 965 276 177 24 chr13 8954526 8954950 -92918219 + L2 LINE L2 2825 3313 0 267 216 11 0 chr13 8955025 8955113 -92918056 + L1ME4a LINE L1 6025 6113 -8 241 203 17 0 chr13 8955168 8955227 -92917942 + L1ME4a LINE L1 6060 6119 -2 373 191 45 0 chr13 8955337 8955426 -92917743 - L1MC4 LINE L1 0 8042 7950 2570 195 57 78 chr13 8955507 8956400 -92916769 - L1MC4 LINE L1 -410 7632 6759 549 225 28 0 chr13 8956561 8956703 -92916466 + PABL_A-int LTR ERV1 4801 4946 -1385 251 152 0 0 chr13 8956729 8956775 -92916394 + PABL_A-int LTR ERV1 3918 3963 -1052 29 0 0 0 chr13 8957112 8957141 -92916028 + AT_rich Low_complexity Low_complexity 1 29 0 726 203 213 102 chr13 8957444 8957946 -92915223 + LTR64 LTR ERVK 1 558 0 21 0 0 0 chr13 8958594 8958615 -92914554 + AT_rich Low_complexity Low_complexity 1 21 0 270 308 17 0 chr13 8958840 8958957 -92914212 - MER103 DNA DNA -45 121 3 2067 287 24 40 chr13 8959243 8960444 -92912725 - L2 LINE L2 -1 3312 2132 243 290 129 46 chr13 8960599 8961034 -92912135 - L2 LINE L2 -1147 2167 1697 339 136 45 0 chr13 8961062 8961128 -92912041 - L1MB3 LINE L1 -7 6176 6108 2041 166 60 5 chr13 8961132 8961530 -92911639 - MSTB1 LTR MaLR -12 420 1 3071 151 45 26 chr13 8961530 8962171 -92910998 - L1MB2 LINE L1 -70 6101 5449 4567 122 14 7 chr13 8962462 8963160 -92910009 + L1PA16 LINE L1 5455 6157 -9 418 294 238 14 chr13 8963258 8963686 -92909483 - L2 LINE L2 -535 2779 2256 266 326 59 38 chr13 8964191 8964335 -92908834 + MIR SINE MIR 23 165 -64 194 208 0 75 chr13 8964633 8964686 -92908483 + L2 LINE L2 3264 3312 -1 201 321 81 42 chr13 8966797 8966970 -92906199 + MIR SINE MIR 16 194 -68 1960 62 117 7 chr13 8966970 8967243 -92905926 + AluSc SINE Alu 1 303 -6 1036 76 0 0 chr13 8969559 8969691 -92903478 - AluSg/x SINE Alu -7 305 174 2265 104 0 17 chr13 8969867 8970166 -92903003 - AluSq SINE Alu -19 294 1 5225 53 20 3 chr13 8970200 8970859 -92902310 + L1PA7 LINE L1 5484 6153 -1 21 0 0 0 chr13 8973010 8973031 -92900138 + AT_rich Low_complexity Low_complexity 1 21 0 190 329 49 12 chr13 8973758 8973840 -92899329 - L2 LINE L2 -54 3218 3134 196 310 0 0 chr13 8974217 8974275 -92898894 - L2 LINE L2 -253 3060 3003 239 272 12 25 chr13 8974546 8974627 -92898542 - L1MC4 LINE L1 -149 7893 7814 326 0 0 0 chr13 8974648 8974683 -92898486 - U2 snRNA snRNA -153 35 1 252 308 104 50 chr13 8975050 8975232 -92897937 - L1MC/D LINE L1 -2082 5726 5535 234 172 62 16 chr13 8975285 8975349 -92897820 - L1MC/D LINE L1 -753 5393 5327 429 20 0 0 chr13 8975826 8975876 -92897293 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 75 0 0 chr13 8975877 8975930 -92897239 + AT_rich Low_complexity Low_complexity 1 53 0 210 37 0 0 chr13 8975999 8976026 -92897143 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr13 8978597 8978625 -92894544 + AT_rich Low_complexity Low_complexity 1 28 0 382 219 133 16 chr13 8978650 8978778 -92894391 - L1ME4a LINE L1 -17 6104 5962 23 0 0 0 chr13 8981355 8981378 -92891791 + AT_rich Low_complexity Low_complexity 1 23 0 314 306 0 0 chr13 8982425 8982510 -92890659 + MER103 DNA DNA 5 89 -77 2062 119 3 17 chr13 8983540 8983842 -92889327 + AluJb SINE Alu 1 298 -14 1586 222 76 58 chr13 8984657 8985225 -92887944 + L1MC4 LINE L1 7465 8042 0 1380 141 0 23 chr13 8985236 8985456 -92887713 + AluJo SINE Alu 85 299 -13 294 260 26 0 chr13 8985630 8985707 -92887462 + MER3 DNA MER1_type 5 83 -126 232 214 14 71 chr13 8985693 8985763 -92887406 - Charlie5 DNA MER1_type -2546 66 1 * 250 230 126 0 chr13 8990190 8990277 -92882892 + L2 LINE L2 3136 3233 -39 204 339 0 0 chr13 8990369 8990431 -92882738 + MIR SINE MIR 184 245 -17 202 275 112 34 chr13 8990625 8990803 -92882366 - L2 LINE L2 -252 3020 2829 192 250 67 0 chr13 8991013 8991073 -92882096 - MIR3 SINE MIR -28 180 117 1567 249 102 85 chr13 8991370 8992299 -92880870 - L1ME LINE L1 -5116 954 10 22 56 0 0 chr13 8992325 8992361 -92880808 + AT_rich Low_complexity Low_complexity 1 36 0 2361 100 7 0 chr13 8992554 8992863 -92880306 + AluSx SINE Alu 1 311 -1 1851 164 0 13 chr13 8993847 8994151 -92879018 + AluJo SINE Alu 1 300 -12 279 0 0 0 chr13 8994152 8994183 -92878986 + (CA)n Simple_repeat Simple_repeat 1 31 0 351 250 17 58 chr13 8994977 8995097 -92878072 + MER5A DNA MER1_type 63 177 -12 1281 97 97 5 chr13 8996937 8997123 -92876046 - AluJo SINE Alu -15 297 95 3633 130 57 0 chr13 8998319 8998894 -92874275 + MER39B LTR ERV1 1 608 -45 532 211 49 8 chr13 8999329 8999452 -92873717 + L1MC4a LINE L1 5523 5650 -471 624 244 185 33 chr13 8999452 8999887 -92873282 + MLT1G1 LTR MaLR 1 595 0 689 231 124 20 chr13 8999888 9000186 -92872983 + L1MC4a LINE L1 5641 5969 -1839 296 208 0 0 chr13 9000488 9000560 -92872609 - MLT2C2 LTR ERVL 0 464 393 1668 201 129 12 chr13 9000604 9001023 -92872146 - MLT2B1 LTR ERVL -50 470 3 485 253 100 3 chr13 9001025 9001172 -92871997 + MIR SINE MIR 15 176 -58 2240 83 14 7 chr13 9001240 9001530 -92871639 - AluSq SINE Alu -21 292 1 209 57 29 0 chr13 9001573 9001608 -92871561 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 542 288 84 14 chr13 9001609 9002039 -92871130 - L1M4 LINE L1 -2868 3278 2819 862 114 16 0 chr13 9002039 9002162 -92871007 - AluSg/x SINE Alu -12 298 174 33 25 0 0 chr13 9002413 9002453 -92870716 + AT_rich Low_complexity Low_complexity 1 40 0 899 281 69 59 chr13 9002702 9003867 -92869302 - L1MEc LINE L1 -2161 4054 2778 2103 125 3 0 chr13 9004007 9004296 -92868873 + AluSx SINE Alu 1 290 -22 636 211 19 115 chr13 9004388 9004501 -92868668 - MIR SINE MIR -13 249 172 2488 39 0 0 chr13 9004501 9004826 -92868343 + AluY SINE Alu 1 325 0 636 211 19 115 chr13 9004826 9004971 -92868198 - MIR SINE MIR -90 172 15 432 271 118 23 chr13 9005023 9005366 -92867803 - L1MEc LINE L1 -3764 2481 2117 23 0 0 0 chr13 9005373 9005396 -92867773 + AT_rich Low_complexity Low_complexity 1 23 0 2089 145 3 0 chr13 9005487 9005783 -92867386 + AluSx SINE Alu 1 297 -15 1229 190 50 75 chr13 9005934 9006318 -92866851 - MLT1A2 LTR MaLR 0 374 1 2184 122 7 0 chr13 9006559 9006855 -92866314 - AluSx SINE Alu -14 298 1 400 246 116 25 chr13 9007012 9007201 -92865968 - LTR50 LTR ERVL -5 790 584 1946 159 31 0 chr13 9007201 9007542 -92865627 + MER6 DNA MER2_type -10 795 -70 294 233 0 0 chr13 9007741 9007827 -92865342 + (TG)n Simple_repeat Simple_repeat 1 86 0 215 270 203 7 chr13 9007936 9008084 -92865085 + MIR SINE MIR 17 193 -69 1550 82 32 9 chr13 9009017 9009236 -92863933 + L1PB1 LINE L1 5927 6150 -1 327 317 10 0 chr13 9010277 9010378 -92862791 + MER5B DNA MER1_type 70 171 -7 718 201 12 6 chr13 9010459 9010623 -92862546 - MER5A DNA MER1_type -2 187 23 1339 181 47 56 chr13 9011024 9011384 -92861785 - L1MB3 LINE L1 -1 6182 5826 447 283 91 24 chr13 9011391 9011588 -92861581 + MIR SINE MIR 5 212 -50 2159 126 3 7 chr13 9012082 9012391 -92860778 + AluSx SINE Alu 1 308 -4 639 227 29 29 chr13 9012487 9012659 -92860510 + MER5B DNA MER1_type 3 174 -4 1861 251 8 23 chr13 9012706 9013229 -92859940 - L1M4 LINE L1 -1678 4468 3954 355 212 75 137 chr13 9014149 9014390 -92858779 - MLT1K LTR MaLR -2 586 361 1363 205 47 26 chr13 9014770 9015111 -92858058 + MER7A DNA MER2_type 1 346 0 324 0 0 0 chr13 9015876 9015912 -92857257 + (CA)n Simple_repeat Simple_repeat 2 37 0 2427 80 0 16 chr13 9016084 9016395 -92856774 - AluSp SINE Alu -7 306 1 239 318 0 0 chr13 9017837 9017900 -92855269 + MIR SINE MIR 95 157 -105 300 116 23 0 chr13 9018351 9018394 -92854775 + MER41C LTR ERV1 23 66 -488 243 111 28 0 chr13 9018390 9018426 -92854743 + MER41C LTR ERV1 25 61 -493 * 3138 131 82 0 chr13 9018426 9018916 -92854253 + MER41C LTR ERV1 25 554 0 221 258 31 82 chr13 9018942 9019039 -92854130 + MIR SINE MIR 92 183 -79 248 278 67 0 chr13 9019139 9019229 -92853940 - MER117 DNA MER1_type -37 160 65 2294 92 3 0 chr13 9019945 9020250 -92852919 - AluSp SINE Alu -4 309 4 7032 93 17 14 chr13 9020712 9021731 -92851438 + HERVH LTR ERV1 1966 2987 -4726 752 167 20 13 chr13 9021725 9021875 -92851294 + HERVH LTR ERV1 3140 3290 -4423 * 3334 122 6 2 chr13 9021865 9022365 -92850804 + HERVH LTR ERV1 3492 3993 -3720 4452 141 1 1 chr13 9022367 9023029 -92850140 + HERVH LTR ERV1 4488 5149 -2564 969 121 0 0 chr13 9023030 9023179 -92849990 + HERVH LTR ERV1 5600 5748 -1965 1850 74 8 0 chr13 9023210 9023468 -92849701 + HERVH LTR ERV1 7429 7688 -25 1603 143 32 11 chr13 9023477 9023498 -92849671 + L1PA15 LINE L1 5880 5899 -266 3474 62 2 9 chr13 9023498 9023949 -92849220 + LTR7 LTR ERV1 1 448 -2 1603 143 32 11 chr13 9023949 9024207 -92848962 + L1PA15 LINE L1 5899 6165 0 1069 138 13 154 chr13 9024736 9025034 -92848135 - LTR8 LTR ERV1 0 691 436 8414 95 20 18 chr13 9025134 9026385 -92846784 - HERVH LTR ERV1 -6459 1254 1 3491 62 5 7 chr13 9026387 9026836 -92846333 - LTR7 LTR ERV1 -2 448 1 2495 141 10 5 chr13 9026836 9027225 -92845944 - L1PA15 LINE L1 -260 5905 5515 321 96 19 0 chr13 9027222 9027274 -92845895 + L1PA15 LINE L1 5474 5526 -642 * 720 287 116 10 chr13 9027527 9027977 -92845192 + MLT1G LTR MaLR 13 549 -41 622 349 7 0 chr13 9028218 9028487 -92844682 - L1ME LINE L1 -356 5765 5495 1877 114 36 23 chr13 9028892 9029198 -92843971 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr13 9029319 9029340 -92843829 + AT_rich Low_complexity Low_complexity 1 21 0 342 343 30 18 chr13 9030983 9031152 -92842017 - MIR SINE MIR -6 256 86 266 174 0 0 chr13 9033512 9033558 -92839611 - MLT2C2 LTR ERVL 0 554 509 249 65 0 0 chr13 9033578 9033609 -92839560 + MLT2C2 LTR ERVL 434 464 0 183 184 0 0 chr13 9033617 9033655 -92839514 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 2044 196 43 5 chr13 9033660 9034058 -92839111 - MLT2C2 LTR ERVL -48 416 4 414 349 9 5 chr13 9034427 9034642 -92838527 - L1ME2 LINE L1 -107 6126 5911 1387 256 45 8 chr13 9034714 9035233 -92837936 - L1ME2 LINE L1 -457 5776 5239 904 188 4 2 chr13 9035236 9035482 -92837687 - AluJb SINE Alu -17 295 2 603 238 72 18 chr13 9035488 9035711 -92837458 - L1ME2 LINE L1 -983 5232 4998 1934 170 89 25 chr13 9035763 9036168 -92837001 - Tigger2a DNA MER2_type -3 431 1 358 284 5 59 chr13 9036559 9036672 -92836497 - L1ME2 LINE L1 -4576 1820 1721 1918 154 0 6 chr13 9036672 9036984 -92836185 - AluSx SINE Alu -2 310 1 358 284 5 59 chr13 9036984 9037074 -92836095 - L1ME2 LINE L1 -4675 1721 1628 * 1583 192 60 6 chr13 9037070 9037419 -92835750 - L1MD1 LINE L1 0 6242 5875 539 242 80 105 chr13 9037408 9037846 -92835323 - L1ME2 LINE L1 -4756 1640 1214 * 1711 231 62 9 chr13 9039828 9040265 -92832904 + MLT1C LTR MaLR 8 467 0 1344 235 87 20 chr13 9040814 9041252 -92831917 - MLT1C LTR MaLR 0 467 1 698 208 127 34 chr13 9043003 9043390 -92829779 - MER31B LTR ERV1 0 543 1 276 264 104 32 chr13 9043494 9043619 -92829550 - MIR SINE MIR -71 191 58 293 230 127 56 chr13 9044156 9044282 -92828887 + MIR3 SINE MIR 23 157 -51 3345 288 171 29 chr13 9044915 9046871 -92826298 - L2 LINE L2 -1 3312 1060 316 266 36 27 chr13 9046896 9047007 -92826162 - MIR SINE MIR -93 115 16 1638 163 3 26 chr13 9047030 9047336 -92825833 + AluJo SINE Alu 1 299 -13 22 0 0 0 chr13 9047470 9047492 -92825677 + AT_rich Low_complexity Low_complexity 1 22 0 5573 116 19 26 chr13 9047635 9048344 -92824825 + L1PA13 LINE L1 4757 5467 -711 2249 87 3 6 chr13 9048344 9048656 -92824513 + AluY SINE Alu 1 311 0 5573 116 19 26 chr13 9048656 9049363 -92823806 + L1PA13 LINE L1 5467 6178 0 319 248 34 43 chr13 9049365 9049482 -92823687 - L1MEd LINE L1 -4919 1210 1095 243 231 81 46 chr13 9049607 9049780 -92823389 - L1MDa LINE L1 -4954 1469 1291 2536 119 14 5 chr13 9050181 9050552 -92822617 - THE1C LTR MaLR -1 374 1 10499 114 30 15 chr13 9050552 9052110 -92821059 - THE1C-int LTR MaLR 0 1580 1 2505 116 16 8 chr13 9052110 9052482 -92820687 - THE1C LTR MaLR 0 375 1 575 103 0 0 chr13 9052885 9052963 -92820206 + AluS SINE Alu 2 79 -233 274 268 78 13 chr13 9053064 9053217 -92819952 - L1MCa LINE L1 -5410 1016 854 393 121 0 30 chr13 9054215 9054281 -92818888 - MLT2A2 LTR ERVL 0 453 390 217 113 0 48 chr13 9054281 9054343 -92818826 + (TTTG)n Simple_repeat Simple_repeat 3 61 0 2035 190 55 65 chr13 9054343 9054848 -92818321 - MLT2B3 LTR ERVL -54 500 1 661 276 63 82 chr13 9055434 9056089 -92817080 - L1MEd LINE L1 -5021 1098 457 2018 102 0 4 chr13 9056489 9056764 -92816405 + AluSg SINE Alu 18 291 -19 184 329 73 12 chr13 9058082 9058164 -92815005 + MIR SINE MIR 97 183 -79 2105 106 13 3 chr13 9058531 9058833 -92814336 - AluSx SINE Alu -7 305 1 287 189 0 124 chr13 9062470 9062655 -92810514 + G-rich Low_complexity Low_complexity 3 164 0 302 229 57 0 chr13 9063460 9063530 -92809639 - MER5A DNA MER1_type -71 118 45 901 174 25 0 chr13 9064320 9064556 -92808613 + CT-rich Low_complexity Low_complexity 1 241 0 243 334 175 25 chr13 9065844 9066290 -92806879 + L2 LINE L2 2174 2686 -628 260 293 81 32 chr13 9066535 9066658 -92806511 + L2 LINE L2 2961 3089 -224 21 0 0 0 chr13 9067208 9067229 -92805940 + AT_rich Low_complexity Low_complexity 1 21 0 1146 176 40 22 chr13 9068906 9069133 -92804036 + MER46A DNA MER2_type 2 232 -4 23 0 0 0 chr13 9069356 9069379 -92803790 + AT_rich Low_complexity Low_complexity 1 23 0 238 312 78 7 chr13 9069398 9069552 -92803617 + MIR SINE MIR 20 184 -78 1277 123 33 5 chr13 9071120 9071331 -92801838 + MSTB1 LTR MaLR 179 395 -37 1336 130 10 91 chr13 9071477 9071521 -92801648 - L1MB4 LINE L1 -1 6179 6133 2304 95 3 7 chr13 9071521 9071815 -92801354 - AluSg SINE Alu -17 293 1 1336 130 10 91 chr13 9071815 9071964 -92801205 - L1MB4 LINE L1 -47 6133 6018 1661 126 0 0 chr13 9071964 9072195 -92800974 + AluSq SINE Alu 73 303 -10 1336 130 10 91 chr13 9072195 9072307 -92800862 - L1MB4 LINE L1 -162 6018 5898 307 275 20 10 chr13 9072488 9072636 -92800533 - L1MB4 LINE L1 -423 5698 5621 31 0 0 0 chr13 9072738 9072769 -92800400 + AT_rich Low_complexity Low_complexity 1 31 0 1731 171 37 3 chr13 9074044 9074342 -92798827 - AluJo SINE Alu -4 308 1 2364 116 0 0 chr13 9074343 9074653 -92798516 - AluSx SINE Alu -2 310 1 1198 192 108 16 chr13 9074881 9074952 -92798217 - LTR52 LTR ERVL -2 419 356 347 60 20 0 chr13 9074952 9075002 -92798167 + (CA)n Simple_repeat Simple_repeat 1 51 0 1198 192 108 16 chr13 9075002 9075311 -92797858 - LTR52 LTR ERVL -65 356 4 2191 283 46 35 chr13 9076732 9077917 -92795252 + L1M4 LINE L1 2218 3416 -2730 5305 167 73 41 chr13 9079495 9079829 -92793340 - L1MC2 LINE L1 0 6344 6022 9992 23 7 199 chr13 9079829 9081537 -92791632 + SVA Other Other 1 1380 -6 5305 167 73 41 chr13 9081537 9082336 -92790833 - L1MC2 LINE L1 -322 6022 5141 1932 154 0 7 chr13 9082336 9082648 -92790521 - AluSx SINE Alu 0 312 1 5305 167 73 41 chr13 9082648 9082982 -92790187 - L1MC2 LINE L1 -1203 5141 4819 962 264 75 20 chr13 9083184 9083479 -92789690 - L1ME3A LINE L1 0 6170 5860 1396 87 101 5 chr13 9083504 9083711 -92789458 + MER30 DNA MER1_type 4 230 0 613 199 20 139 chr13 9083725 9083926 -92789243 - MER58C DNA MER1_type -1 214 38 1161 239 139 21 chr13 9083946 9084422 -92788747 - L1ME3A LINE L1 -367 5803 5272 230 167 24 0 chr13 9084484 9084526 -92788643 - LTR67 LTR ERVL -9 548 506 1285 246 91 48 chr13 9084551 9084991 -92788178 - MLT2B1 LTR ERVL -61 459 1 246 225 45 22 chr13 9085034 9085123 -92788046 - LTR67 LTR ERVL -107 450 360 704 264 146 21 chr13 9085768 9086048 -92787121 - MLT1J LTR MaLR -175 336 22 25 23 0 23 chr13 9086075 9086099 -92787070 + AT_rich Low_complexity Low_complexity 1 25 -17 2296 101 3 0 chr13 9086099 9086397 -92786772 - AluSp SINE Alu -14 299 1 25 23 0 23 chr13 9086397 9086415 -92786754 + AT_rich Low_complexity Low_complexity 25 42 0 3453 163 3 24 chr13 9087169 9087783 -92785386 - L1PB4 LINE L1 -2 6154 5554 2344 148 50 36 chr13 9087788 9088371 -92784798 - L1PB4 LINE L1 -678 5478 4882 1632 173 21 7 chr13 9088716 9089000 -92784169 - AluJo SINE Alu -24 288 1 1890 142 0 4 chr13 9089454 9089721 -92783448 - AluSx SINE Alu -46 266 1 268 320 61 44 chr13 9089928 9089958 -92783211 - L1MC/D LINE L1 -304 5817 5789 3200 162 18 11 chr13 9089958 9090513 -92782656 + MER89 LTR ERV1 1 559 0 268 320 61 44 chr13 9090513 9090768 -92782401 - L1MC/D LINE L1 -332 5789 5618 319 245 21 64 chr13 9090933 9091027 -92782142 - LTR16A LTR ERVL -201 249 160 256 290 40 40 chr13 9091157 9091257 -92781912 - L2 LINE L2 -94 3178 3079 195 266 62 16 chr13 9091458 9091522 -92781647 + L2 LINE L2 3241 3307 -6 * 200 178 0 22 chr13 9091517 9091562 -92781607 - MIR SINE MIR -86 176 133 200 280 0 0 chr13 9091785 9091835 -92781334 - L2 LINE L2 -1384 1930 1881 2222 116 51 23 chr13 9094158 9094512 -92778657 + THE1B LTR MaLR 1 364 0 11793 97 5 1 chr13 9094512 9096086 -92777083 + THE1B-int LTR MaLR 1 1580 0 2041 118 91 21 chr13 9096086 9096426 -92776743 + THE1B LTR MaLR 1 364 0 256 322 0 11 chr13 9096431 9096521 -92776648 - L2 LINE L2 -3 3269 3181 * 270 264 118 0 chr13 9096520 9096630 -92776539 + MIR SINE MIR 90 212 -50 187 344 16 38 chr13 9096710 9096843 -92776326 - L3b LINE CR1 -300 1283 1154 2152 124 0 20 chr13 9096843 9097142 -92776027 - AluSq SINE Alu -20 293 1 187 344 16 38 chr13 9097142 9097194 -92775975 - L3b LINE CR1 -429 1154 1102 246 293 38 19 chr13 9097581 9097687 -92775482 + L1MC/D LINE L1 5681 5788 -2020 282 306 28 9 chr13 9098349 9098457 -92774712 - MIR SINE MIR -66 142 33 1816 146 48 0 chr13 9101039 9101339 -92771830 + AluSg SINE Alu 1 313 0 606 226 0 0 chr13 9102471 9102595 -92770574 - MER3 DNA MER1_type -5 204 81 21 0 0 0 chr13 9102601 9102622 -92770547 + AT_rich Low_complexity Low_complexity 1 21 0 2549 51 0 0 chr13 9103433 9103728 -92769441 - AluY SINE Alu -16 295 1 600 266 43 18 chr13 9103959 9104177 -92768992 + MIR SINE MIR 33 249 -13 1145 164 65 11 chr13 9104235 9104497 -92768672 - L1MA4 LINE L1 0 6300 6025 208 308 0 0 chr13 9104978 9105043 -92768126 + MIR SINE MIR 176 240 -22 1192 132 11 0 chr13 9105133 9105307 -92767862 + AluSg/x SINE Alu 137 312 0 27 0 0 0 chr13 9105635 9105662 -92767507 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr13 9106076 9106113 -92767056 + GC_rich Low_complexity Low_complexity 1 37 0 453 264 39 0 chr13 9106263 9106392 -92766777 + MIR SINE MIR 80 213 -49 539 316 56 5 chr13 9106526 9106741 -92766428 - MIR SINE MIR -30 232 7 1705 174 36 0 chr13 9106756 9107031 -92766138 + AluJo SINE Alu 4 288 -24 1088 172 0 0 chr13 9107816 9107985 -92765184 - AluJo SINE Alu -133 179 11 2299 113 0 28 chr13 9108218 9108537 -92764632 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr13 9110269 9110292 -92762877 + AT_rich Low_complexity Low_complexity 1 23 0 410 279 70 6 chr13 9110320 9110478 -92762691 + MIR SINE MIR 81 248 -14 316 279 66 0 chr13 9110554 9110676 -92762493 + L2 LINE L2 2418 2547 -767 3746 126 11 42 chr13 9110677 9111313 -92761856 + L1MC1 LINE L1 5718 6333 0 23 33 0 0 chr13 9111377 9111407 -92761762 + AT_rich Low_complexity Low_complexity 1 30 0 629 299 65 31 chr13 9111611 9112029 -92761140 + L2 LINE L2 2874 3305 -8 2014 161 13 40 chr13 9112336 9112714 -92760455 + MLT1B LTR MaLR 1 368 -22 522 197 197 0 chr13 9112923 9113050 -92760119 + LTR16C LTR ERVL 98 249 -242 802 189 25 51 chr13 9113284 9113321 -92759848 + LTR16C LTR ERVL 299 335 -156 1400 214 57 52 chr13 9113321 9113709 -92759460 - MLT1B LTR MaLR 0 390 1 802 189 25 51 chr13 9113709 9113867 -92759302 + LTR16C LTR ERVL 335 489 -2 241 220 99 22 chr13 9113867 9113948 -92759221 - MER103 DNA DNA -21 145 58 1602 83 0 0 chr13 9113948 9114141 -92759028 - AluSg/x SINE Alu -9 303 111 234 333 9 29 chr13 9114966 9115071 -92758098 + MIR SINE MIR 141 243 -19 219 252 135 54 chr13 9115151 9115262 -92757907 + MIR SINE MIR 21 140 -68 277 172 183 97 chr13 9115601 9115787 -92757382 - MER112 DNA MER1_type -4 256 55 903 109 28 186 chr13 9115816 9115873 -92757296 + MER7A DNA MER2_type 1 65 -2973 2278 105 3 0 chr13 9115873 9116168 -92757001 + AluSq SINE Alu 1 296 -17 903 109 28 186 chr13 9116168 9116358 -92756811 + MER7A DNA MER2_type 65 207 -139 * 1138 193 16 0 chr13 9116357 9116549 -92756620 + MSTD LTR MaLR 202 396 0 1988 151 40 81 chr13 9116741 9116794 -92756375 - MSTA LTR MaLR 0 428 374 3068 65 0 0 chr13 9116794 9117178 -92755991 - L1PA7 LINE L1 -5 6149 5766 1988 151 40 81 chr13 9117178 9117568 -92755601 - MSTA LTR MaLR -54 374 3 269 303 15 53 chr13 9117655 9117787 -92755382 + MER5B DNA MER1_type 51 177 -1 1966 139 35 30 chr13 9118388 9118756 -92754413 - L1MB3 LINE L1 0 6183 5814 292 190 35 0 chr13 9118798 9118856 -92754313 - L1MB2 LINE L1 -2 6169 6110 2649 137 17 2 chr13 9118945 9119369 -92753800 - L1MB3 LINE L1 -77 6106 5677 1827 143 18 0 chr13 9119921 9120201 -92752968 + AluSx SINE Alu 11 295 -17 994 248 98 10 chr13 9120346 9120652 -92752517 + MER46C DNA MER2_type 6 338 0 219 125 0 0 chr13 9121166 9121206 -92751963 + (TG)n Simple_repeat Simple_repeat 2 41 0 1333 264 71 68 chr13 9122405 9123126 -92750043 - L1MEd LINE L1 -4864 1255 533 238 285 102 36 chr13 9124693 9124830 -92748339 - L2 LINE L2 -46 3267 3122 3703 127 114 28 chr13 9125605 9126327 -92746842 - LTR1 LTR ERV1 0 785 2 480 238 79 37 chr13 9126428 9126592 -92746577 - MER91A DNA MER1_type -25 171 1 228 347 42 11 chr13 9128647 9128742 -92744427 + L2 LINE L2 3214 3311 -2 527 300 82 67 chr13 9129416 9129746 -92743423 + L2 LINE L2 2926 3260 -12 1955 123 0 20 chr13 9129936 9130236 -92742933 - AluSx SINE Alu 0 312 19 1921 102 0 0 chr13 9130456 9130712 -92742457 + AluSg SINE Alu 1 256 -54 745 208 118 65 chr13 9130816 9131095 -92742074 + MLT1D LTR MaLR 133 426 -79 3090 145 45 0 chr13 9131111 9131642 -92741527 - L1MC2 LINE L1 -169 6175 5621 343 136 0 0 chr13 9131642 9131701 -92741468 + MLT1D LTR MaLR 439 497 -8 602 250 48 27 chr13 9131816 9132004 -92741165 - MIR SINE MIR -4 258 67 238 110 24 37 chr13 9132993 9133075 -92740094 + (CCCG)n Simple_repeat Simple_repeat 4 84 0 355 190 52 69 chr13 9134330 9134446 -92738723 - MER5A DNA MER1_type -72 117 4 478 287 117 74 chr13 9135218 9135636 -92737533 - MLT1K LTR MaLR -2 586 151 1716 257 18 14 chr13 9136399 9136773 -92736396 - L1ME3 LINE L1 0 6162 5784 1754 178 83 3 chr13 9136773 9137111 -92736058 - MLT1A1 LTR MaLR 0 365 1 1716 257 18 14 chr13 9137111 9137226 -92735943 - L1ME3 LINE L1 -378 5784 5671 301 259 147 9 chr13 9137543 9137659 -92735510 - L1ME4a LINE L1 0 6121 5990 24 0 0 0 chr13 9137659 9137683 -92735486 + AT_rich Low_complexity Low_complexity 1 24 0 325 122 0 0 chr13 9138092 9138141 -92735028 + AluSg SINE Alu 248 296 -6 2345 118 49 3 chr13 9139253 9139601 -92733568 + THE1B LTR MaLR 1 364 0 192 313 47 0 chr13 9139843 9139907 -92733262 + MIR SINE MIR 156 222 -40 187 261 144 65 chr13 9139982 9140135 -92733034 + L2 LINE L2 2918 3082 -190 2311 61 3 3 chr13 9140247 9140540 -92732629 - AluY SINE Alu -5 306 14 1395 216 77 70 chr13 9140578 9141100 -92732069 + MER39 LTR ERV1 1 707 0 304 339 24 24 chr13 9141102 9141147 -92732022 - MIR3 SINE MIR -45 163 119 1431 172 62 44 chr13 9141147 9141385 -92731784 + MER2 DNA MER2_type 1 248 -96 2037 114 10 3 chr13 9141385 9141684 -92731485 - AluSq SINE Alu -12 301 1 1431 172 62 44 chr13 9141684 9141783 -92731386 + MER2 DNA MER2_type 248 344 0 304 339 24 24 chr13 9141783 9141861 -92731308 - MIR3 SINE MIR -88 120 40 2199 115 0 0 chr13 9142091 9142396 -92730773 + AluSc SINE Alu 1 305 -4 210 256 23 0 chr13 9142476 9142519 -92730650 - L2 LINE L2 -17 3255 3212 683 244 105 60 chr13 9142826 9143342 -92729827 + MER34C LTR ERV1 47 585 0 405 0 0 0 chr13 9143514 9143559 -92729610 + (TG)n Simple_repeat Simple_repeat 1 45 0 1702 177 0 19 chr13 9144175 9144492 -92728677 + AluJo SINE Alu 2 312 0 786 260 100 74 chr13 9145172 9145672 -92727497 - LTR33 LTR ERVL -8 513 1 216 0 0 0 chr13 9145952 9145976 -92727193 + (CA)n Simple_repeat Simple_repeat 1 24 0 2019 123 7 0 chr13 9146701 9146994 -92726175 + AluSx SINE Alu 1 295 -17 426 212 142 9 chr13 9147088 9147201 -92725968 + MIR SINE MIR 95 222 -40 428 240 48 24 chr13 9147249 9147374 -92725795 - MLT1J2 LTR MaLR -56 394 267 315 233 283 0 chr13 9148064 9148184 -92724985 - MIR SINE MIR -16 246 93 420 188 228 7 chr13 9149737 9149886 -92723283 - MER20B DNA MER1_type -596 187 6 4040 274 75 35 chr13 9151107 9151869 -92721300 + L1MEc LINE L1 46 776 -5620 2136 106 3 0 chr13 9151869 9152161 -92721008 - AluSp SINE Alu -20 293 1 4040 274 75 35 chr13 9152161 9153132 -92720037 + L1MEc LINE L1 776 1849 -4547 203 177 32 16 chr13 9153132 9153194 -92719975 + T-rich Low_complexity Low_complexity 1 63 0 5907 45 11 8 chr13 9153231 9153966 -92719203 - SVA Other Other 0 1386 650 1181 197 18 18 chr13 9153984 9154258 -92718911 + L1MEc LINE L1 1836 2109 -4287 3113 135 32 50 chr13 9154519 9155154 -92718015 + MER4B LTR ERV1 2 779 0 325 309 80 37 chr13 9155343 9155376 -92717793 + L2 LINE L2 2896 2926 -346 1902 140 14 0 chr13 9155376 9155669 -92717500 - AluSx SINE Alu -13 299 3 325 309 80 37 chr13 9155669 9155823 -92717346 + L2 LINE L2 2926 3091 -181 999 168 37 47 chr13 9155899 9156089 -92717080 - MER5A DNA MER1_type 0 189 2 3640 201 99 8 chr13 9156139 9156260 -92716909 - MER21B LTR ERV1 -1 862 753 222 91 0 0 chr13 9156260 9156293 -92716876 + (CAATT)n Simple_repeat Simple_repeat 4 36 0 3640 201 99 8 chr13 9156293 9156948 -92716221 - MER21B LTR ERV1 -110 753 15 282 29 0 0 chr13 9156950 9156985 -92716184 + (CA)n Simple_repeat Simple_repeat 2 36 0 213 190 17 17 chr13 9156985 9157043 -92716126 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 336 253 12 24 chr13 9157062 9157145 -92716024 + L2 LINE L2 3232 3313 0 2735 135 108 62 chr13 9157687 9158271 -92714898 + LTR36 LTR ERV1 1 611 0 253 241 47 39 chr13 9159908 9160020 -92713149 + LTR50 LTR ERVL 436 791 -4 1480 194 3 25 chr13 9160471 9160785 -92712384 - AluJo SINE Alu -2 310 4 1363 114 0 0 chr13 9161874 9162067 -92711102 - AluSp SINE Alu -4 309 117 862 127 0 0 chr13 9162068 9162194 -92710975 + AluSq/x SINE Alu 2 127 -185 388 280 104 33 chr13 9162194 9162376 -92710793 - MIR SINE MIR -3 259 65 1611 210 113 12 chr13 9163960 9164384 -92708785 - MLT1C LTR MaLR 0 467 1 252 267 40 13 chr13 9164676 9164751 -92708418 - L2 LINE L2 -42 3230 3154 403 285 135 25 chr13 9165206 9165406 -92707763 + MIR SINE MIR 20 241 -21 256 320 122 15 chr13 9165638 9165835 -92707334 + L2 LINE L2 2521 2738 -576 1709 146 19 0 chr13 9165968 9166235 -92706934 + AluJb SINE Alu 1 272 -40 464 32 16 0 chr13 9166241 9166303 -92706866 + (TC)n Simple_repeat Simple_repeat 2 64 0 346 231 0 0 chr13 9166313 9166378 -92706791 - L1MC4 LINE L1 -1339 6703 6639 1822 188 29 6 chr13 9167229 9167568 -92705601 + MLT1A1 LTR MaLR 3 349 -16 1734 181 24 86 chr13 9167568 9167977 -92705192 - MSTD LTR MaLR 0 396 13 561 262 71 6 chr13 9168797 9168980 -92704189 + MIR SINE MIR 13 207 -55 2684 233 125 24 chr13 9169771 9170415 -92702754 + Zaphod DNA AcHobo 9 586 -3445 2215 106 3 7 chr13 9170415 9170716 -92702453 + AluSx SINE Alu 1 300 -12 2684 233 125 24 chr13 9170716 9171297 -92701872 + Zaphod DNA AcHobo 586 1352 -2679 1573 167 7 25 chr13 9171668 9171944 -92701225 - AluJb SINE Alu -14 298 28 2480 108 5 42 chr13 9172907 9172984 -92700185 - THE1B LTR MaLR 0 364 286 1926 123 3 69 chr13 9172984 9173323 -92699846 + AluSx SINE Alu 1 312 0 2480 108 5 42 chr13 9173323 9173623 -92699546 - THE1B LTR MaLR -78 286 1 266 115 19 0 chr13 9174185 9174237 -92698932 + L1MB2 LINE L1 5864 5916 -255 2330 187 6 39 chr13 9174435 9175017 -92698152 + L1M3 LINE L1 4930 5486 -694 2246 100 0 0 chr13 9175017 9175321 -92697848 + AluSc SINE Alu 1 304 0 2330 187 6 39 chr13 9175321 9175444 -92697725 + L1M3 LINE L1 5486 5612 -568 2426 90 3 0 chr13 9175444 9175755 -92697414 + AluSx SINE Alu 1 312 0 242 161 34 186 chr13 9176277 9176341 -92696828 + MER94 DNA DNA 1 41 -93 2964 13 0 0 chr13 9176341 9176659 -92696510 - AluYb8 SINE Alu 0 318 1 242 161 34 186 chr13 9176659 9176712 -92696457 + MER94 DNA DNA 41 100 -34 221 192 164 14 chr13 9176842 9176915 -92696254 - MIR3 SINE MIR -7 201 118 24 32 0 0 chr13 9176968 9176999 -92696170 + AT_rich Low_complexity Low_complexity 1 31 0 2168 112 3 0 chr13 9177000 9177286 -92695883 - AluSp SINE Alu -26 287 1 2079 158 0 0 chr13 9177887 9178197 -92694972 + AluJb SINE Alu 1 310 -2 426 304 121 18 chr13 9178224 9178448 -92694721 + MIR SINE MIR 16 262 0 933 272 50 53 chr13 9179579 9180059 -92693110 - MLT1H LTR MaLR 0 549 1 213 321 220 0 chr13 9180693 9180802 -92692367 + MIR SINE MIR 17 149 -113 1991 146 125 31 chr13 9181577 9181968 -92691201 - MSTA LTR MaLR 0 428 1 46 83 0 0 chr13 9183061 9183170 -92689999 + AT_rich Low_complexity Low_complexity 1 109 0 1819 154 6 35 chr13 9183549 9183860 -92689309 + AluJo SINE Alu 2 303 -9 205 329 0 13 chr13 9184008 9184084 -92689085 + L2 LINE L2 3197 3271 -1 2561 180 75 58 chr13 9186512 9187096 -92686073 - MER7C DNA MER2_type -1 601 8 583 245 65 113 chr13 9187125 9187558 -92685611 + L1ME LINE L1 6 417 -5653 1725 253 99 32 chr13 9187576 9188524 -92684645 + L1ME LINE L1 498 1481 -4599 308 133 0 0 chr13 9188524 9188569 -92684600 + Alu SINE Alu 1 45 -255 431 246 7 51 chr13 9191136 9191274 -92681895 + MIR SINE MIR 81 212 -50 2191 125 6 10 chr13 9191389 9191702 -92681467 + AluSx SINE Alu 1 312 0 504 309 46 60 chr13 9191704 9191903 -92681266 + L1ME LINE L1 1509 1709 -4552 2276 92 0 0 chr13 9191903 9192234 -92680935 + AluY SINE Alu 1 331 0 504 309 46 60 chr13 9192234 9192447 -92680722 + L1ME LINE L1 1709 1916 -4345 * 1332 129 45 140 chr13 9192445 9192532 -92680637 - L1MB3 LINE L1 0 6183 6089 207 0 0 0 chr13 9192532 9192555 -92680614 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1643 181 15 8 chr13 9192555 9192821 -92680348 - AluJo SINE Alu -30 282 15 1332 129 45 140 chr13 9192821 9193055 -92680114 - L1MB3 LINE L1 -93 6090 5896 2385 95 0 0 chr13 9193055 9193351 -92679818 - AluY SINE Alu -15 296 1 1332 129 45 140 chr13 9193351 9193384 -92679785 - L1MB3 LINE L1 -287 5896 5861 * 5489 169 29 38 chr13 9193376 9194813 -92678356 - L1M4 LINE L1 -3748 2634 23 2034 253 70 27 chr13 9194835 9195378 -92677791 + L1ME LINE L1 1949 2554 -3526 2405 72 0 3 chr13 9195378 9195684 -92677485 - AluY SINE Alu -6 305 1 2034 253 70 27 chr13 9195684 9195976 -92677193 + L1ME LINE L1 2554 2832 -3248 209 194 0 0 chr13 9196542 9196578 -92676591 + T-rich Low_complexity Low_complexity 4 39 0 202 231 0 0 chr13 9197666 9197705 -92675464 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 2203 103 7 0 chr13 9197920 9198210 -92674959 - AluSx SINE Alu -20 292 1 269 253 32 53 chr13 9198348 9198443 -92674726 + MIR SINE MIR 48 140 -122 22 0 0 0 chr13 9199620 9199642 -92673527 + AT_rich Low_complexity Low_complexity 1 22 0 231 296 0 0 chr13 9202009 9202080 -92671089 + T-rich Low_complexity Low_complexity 1 71 0 2263 246 97 132 chr13 9202537 9203642 -92669527 + L2 LINE L2 1290 2432 -881 1887 206 52 48 chr13 9203642 9204143 -92669026 - MLT1D LTR MaLR -2 503 1 2263 246 97 132 chr13 9204143 9204466 -92668703 + L2 LINE L2 2432 2765 -548 1534 182 69 54 chr13 9204466 9204856 -92668313 + MSTD LTR MaLR 1 396 0 2263 246 97 132 chr13 9204856 9205505 -92667664 + L2 LINE L2 2765 3313 0 731 263 34 17 chr13 9205761 9205997 -92667172 - MIR SINE MIR -3 259 20 220 304 27 18 chr13 9206621 9206733 -92666436 + MIR SINE MIR 20 132 -130 403 242 28 95 chr13 9208861 9209323 -92663846 + L1ME4a LINE L1 5689 6118 -3 811 131 33 26 chr13 9209337 9209490 -92663679 - L1MA9 LINE L1 -2 6310 6157 225 0 0 0 chr13 9209490 9209515 -92663654 + (A)n Simple_repeat Simple_repeat 1 25 0 2465 80 7 0 chr13 9209580 9209880 -92663289 + AluY SINE Alu 1 302 -9 310 328 79 18 chr13 9210363 9210592 -92662577 + L1ME LINE L1 5544 5786 -335 3655 150 54 42 chr13 9210604 9211322 -92661847 - LTR8A LTR ERV1 0 727 1 23 33 0 0 chr13 9211382 9211412 -92661757 + AT_rich Low_complexity Low_complexity 1 30 0 611 214 0 15 chr13 9211562 9211693 -92661476 + MIR SINE MIR 32 160 -102 3630 120 62 9 chr13 9211698 9212275 -92660894 - MER4B LTR ERV1 -2 608 1 4855 99 22 12 chr13 9212585 9213269 -92659900 - LTR8 LTR ERV1 0 691 1 320 131 0 16 chr13 9213279 9213340 -92659829 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 180 0 0 0 chr13 9213350 9213370 -92659799 + (TCTA)n Simple_repeat Simple_repeat 1 20 0 5975 55 16 4 chr13 9213811 9214568 -92658601 + MER4E LTR ERV1 1 766 0 282 276 28 55 chr13 9214568 9214702 -92658467 - MER5A DNA MER1_type -37 152 21 3935 38 0 19 chr13 9214844 9215324 -92657845 - L1PA5 LINE L1 0 6154 5684 203 318 0 23 chr13 9218390 9218478 -92654691 + MIR SINE MIR 85 170 -92 228 242 45 0 chr13 9219151 9219217 -92653952 + MIR3 SINE MIR 115 183 -25 258 246 43 0 chr13 9220433 9220502 -92652667 + MLT1J LTR MaLR 114 185 -326 1110 132 0 30 chr13 9220708 9220905 -92652264 - L1PB1 LINE L1 0 6151 5961 228 278 100 11 chr13 9221022 9221112 -92652057 + L2 LINE L2 3150 3247 -66 456 248 156 0 chr13 9222471 9222612 -92650557 + MIR SINE MIR 100 262 0 2320 124 33 28 chr13 9222766 9223128 -92650041 - THE1B LTR MaLR 0 364 1 559 299 32 16 chr13 9223912 9224099 -92649070 + MIR3 SINE MIR 16 205 -3 2545 99 14 8 chr13 9224413 9224766 -92648403 - THE1A LTR MaLR 0 355 1 1578 203 7 14 chr13 9224862 9225158 -92648011 - AluJb SINE Alu -18 294 1 237 337 71 0 chr13 9226982 9227080 -92646089 + L2 LINE L2 3168 3272 0 1297 293 82 7 chr13 9228559 9229024 -92644145 + MLT1J LTR MaLR 7 506 -5 438 276 53 58 chr13 9229037 9229280 -92643889 + LTR33 LTR ERVL 83 324 -197 238 321 43 41 chr13 9230047 9230227 -92642942 + L2 LINE L2 2782 2965 -307 948 163 0 109 chr13 9230229 9230450 -92642719 + MER3 DNA MER1_type 10 206 -3 602 311 91 76 chr13 9230708 9231091 -92642078 + L2 LINE L2 2854 3242 -30 287 49 24 0 chr13 9231284 9231325 -92641844 + (GA)n Simple_repeat Simple_repeat 1 42 0 533 294 169 47 chr13 9232229 9232908 -92640261 + HAL1 LINE L1 2 796 -1711 1104 142 73 10 chr13 9232908 9233112 -92640057 - MER20 DNA MER1_type 0 219 3 533 294 169 47 chr13 9233112 9233239 -92639930 + HAL1 LINE L1 796 906 -1601 256 223 0 0 chr13 9233686 9233764 -92639405 + L1MC5 LINE L1 7837 8014 -28 1559 203 45 0 chr13 9233773 9234063 -92639106 - AluJo SINE Alu -9 303 1 191 223 96 128 chr13 9234255 9234349 -92638820 + L2 LINE L2 2955 3045 -227 395 220 30 20 chr13 9234419 9234519 -92638650 + MER5A DNA MER1_type 86 186 -3 321 243 118 15 chr13 9234593 9234729 -92638440 + L1ME4a LINE L1 5940 6089 -32 1852 154 0 18 chr13 9236714 9237033 -92636136 - AluJo SINE Alu 0 314 1 1112 132 0 2 chr13 9237522 9237760 -92635409 + AluSx SINE Alu 2 273 -39 189 74 0 0 chr13 9237769 9237796 -92635373 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2348 53 0 7 chr13 9238033 9238315 -92634854 - AluY SINE Alu -4 307 28 857 10 10 0 chr13 9238682 9238784 -92634385 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 23 33 0 0 chr13 9239413 9239443 -92633726 + AT_rich Low_complexity Low_complexity 1 30 0 712 251 55 64 chr13 9239659 9239989 -92633180 - L1ME3 LINE L1 0 6162 5836 812 164 8 8 chr13 9240550 9240684 -92632485 - AluJo SINE Alu -178 134 1 1655 157 61 14 chr13 9240691 9240971 -92632198 - AluJb SINE Alu -19 293 1 2414 100 0 0 chr13 9241582 9241881 -92631288 - AluSx SINE Alu -13 299 1 184 236 112 45 chr13 9241945 9242034 -92631135 - L2 LINE L2 -10 3303 3209 191 262 0 0 chr13 9242135 9242177 -92630992 + L2 LINE L2 3261 3302 -11 523 276 72 0 chr13 9242385 9242537 -92630632 - MIR SINE MIR -16 246 84 658 280 70 5 chr13 9243441 9243655 -92629514 + MIR SINE MIR 3 230 -32 364 179 0 0 chr13 9244374 9244430 -92628739 - L2 LINE L2 0 3272 3217 * 416 214 232 36 chr13 9244423 9244591 -92628578 + MIR SINE MIR 48 248 -14 952 183 24 28 chr13 9245364 9245577 -92627592 + MER20 DNA MER1_type 1 212 -7 194 221 150 26 chr13 9246083 9246196 -92626973 + L2 LINE L2 2148 2274 -1040 2564 62 0 7 chr13 9246547 9246856 -92626313 - AluY SINE Alu -4 307 1 233 250 67 50 chr13 9247024 9247144 -92626025 - MIR SINE MIR -65 143 22 376 179 0 0 chr13 9248013 9248080 -92625089 - L1P5 LINE L1 -522 5634 5568 1926 106 0 19 chr13 9248435 9248700 -92624469 + AluSx SINE Alu 1 260 -52 394 333 59 15 chr13 9249591 9249726 -92623443 + MIR SINE MIR 9 149 -113 1833 177 0 23 chr13 9249768 9250078 -92623091 + AluJb SINE Alu 1 303 -9 200 274 48 0 chr13 9250238 9250300 -92622869 + MIR SINE MIR 197 261 -1 4480 187 26 19 chr13 9250984 9251685 -92621484 - L1MB3 LINE L1 -3 6180 5486 210 37 0 0 chr13 9251685 9251712 -92621457 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4480 187 26 19 chr13 9251712 9252506 -92620663 - L1MB3 LINE L1 -697 5486 4675 457 261 52 0 chr13 9252516 9252575 -92620594 + MIR SINE MIR 117 171 -91 234 0 0 0 chr13 9252575 9252601 -92620568 + (TG)n Simple_repeat Simple_repeat 2 27 0 457 261 52 0 chr13 9252601 9252656 -92620513 + MIR SINE MIR 171 237 -25 27 49 0 0 chr13 9252656 9252697 -92620472 + AT_rich Low_complexity Low_complexity 1 41 0 296 282 55 74 chr13 9252898 9253100 -92620069 + MIR SINE MIR 52 249 -13 1968 134 41 0 chr13 9253648 9253938 -92619231 - AluSx SINE Alu -10 302 1 21 57 0 0 chr13 9254560 9254595 -92618574 + AT_rich Low_complexity Low_complexity 1 35 0 203 156 0 0 chr13 9255080 9255112 -92618057 + (CA)n Simple_repeat Simple_repeat 1 32 0 397 257 112 33 chr13 9255735 9255887 -92617282 + L1ME4a LINE L1 5942 6105 -16 341 290 131 16 chr13 9256272 9256455 -92616714 - L1ME4a LINE L1 -209 5912 5709 256 254 0 56 chr13 9256472 9256543 -92616626 - L2 LINE L2 0 3272 3206 1357 199 38 72 chr13 9256673 9257064 -92616105 + MLT1B LTR MaLR 1 378 -12 216 196 89 0 chr13 9257068 9257124 -92616045 - L2 LINE L2 -266 3047 2987 364 347 57 17 chr13 9257941 9258117 -92615052 - L2 LINE L2 -609 2705 2523 * 803 304 149 9 chr13 9258108 9258565 -92614604 + L2 LINE L2 2763 3297 -16 373 270 56 51 chr13 9258555 9258751 -92614418 - L2 LINE L2 -793 2521 2325 * 1267 154 139 4 chr13 9258752 9259019 -92614150 + MLT1D LTR MaLR 1 303 -202 480 117 0 0 chr13 9259994 9260071 -92613098 + (CA)n Simple_repeat Simple_repeat 2 78 0 480 81 0 0 chr13 9260958 9261032 -92612137 + (TC)n Simple_repeat Simple_repeat 1 74 0 1594 182 45 18 chr13 9261240 9261730 -92611439 - MER74A LTR ERVL 0 558 1 215 171 98 0 chr13 9261880 9261921 -92611248 + L2 LINE L2 3210 3254 -18 317 300 99 41 chr13 9261943 9262186 -92610983 + L2 LINE L2 3002 3258 -14 333 287 100 34 chr13 9263231 9263486 -92609683 - L2 LINE L2 0 3313 2967 284 255 245 0 chr13 9263664 9263762 -92609407 - MER5A DNA MER1_type -2 187 66 2039 125 7 0 chr13 9263889 9264198 -92608971 + AluSx SINE Alu 1 311 0 302 28 0 0 chr13 9264202 9264238 -92608931 + AluSg/x SINE Alu 75 110 -190 569 148 0 0 chr13 9264239 9264320 -92608849 - AluS SINE Alu -229 83 3 1005 204 49 172 chr13 9264343 9264588 -92608581 - L1MC4 LINE L1 -555 7487 7213 1433 228 30 15 chr13 9264588 9264921 -92608248 - MER58B DNA MER1_type -3 338 1 1005 204 49 172 chr13 9264921 9265309 -92607860 - L1MC4 LINE L1 -829 7213 6779 216 0 0 0 chr13 9265309 9265333 -92607836 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1796 115 53 0 chr13 9265339 9265582 -92607587 - AluSg SINE Alu -48 262 7 1005 204 49 172 chr13 9265582 9265736 -92607433 - L1MC4 LINE L1 -1081 6961 6790 278 197 0 66 chr13 9265742 9265818 -92607351 + MER116 DNA Mariner 10 80 0 379 330 67 32 chr13 9265822 9265913 -92607256 - L1MC4a LINE L1 -1105 6703 6617 1898 158 24 0 chr13 9265913 9266210 -92606959 - AluSx SINE Alu -8 304 1 379 330 67 32 chr13 9266210 9266403 -92606766 - L1MC4a LINE L1 -1191 6617 6409 2465 71 0 19 chr13 9266433 9266741 -92606428 + AluY SINE Alu 1 302 -9 180 0 0 0 chr13 9266806 9266826 -92606343 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 361 231 99 0 chr13 9267218 9267309 -92605860 - MIR SINE MIR -71 191 92 963 246 32 7 chr13 9267999 9268276 -92604893 + L1PB4 LINE L1 5651 5934 -222 * 2427 174 72 18 chr13 9268035 9268594 -92604575 + L1MA9 LINE L1 5686 6274 -38 2501 84 10 0 chr13 9269240 9269549 -92603620 + AluSq SINE Alu 1 312 -1 2126 102 3 0 chr13 9271206 9271525 -92601644 - AluSx SINE Alu 0 320 1 492 273 78 7 chr13 9271688 9271842 -92601327 + L1ME4a LINE L1 5926 6090 -31 195 325 12 0 chr13 9271863 9271962 -92601207 - MIR SINE MIR -2 260 161 1637 111 4 4 chr13 9271991 9272216 -92600953 + AluSx SINE Alu 1 225 -87 272 269 28 0 chr13 9272233 9272341 -92600828 + L1M4 LINE L1 4301 4411 -1735 1742 122 0 0 chr13 9272344 9272574 -92600595 + AluSx SINE Alu 1 230 -82 3192 130 16 34 chr13 9272574 9273127 -92600042 - MER49 LTR ERV1 -380 543 1 381 224 12 12 chr13 9273144 9273229 -92599940 - MIR SINE MIR -115 147 63 2479 78 0 10 chr13 9273773 9274080 -92599089 + AluY SINE Alu 1 304 -7 497 248 118 6 chr13 9274175 9274336 -92598833 + MIR SINE MIR 79 257 -5 1102 173 51 19 chr13 9274441 9274655 -92598514 + MER58A DNA MER1_type 1 221 -3 2229 118 6 13 chr13 9274824 9275230 -92597939 - AluSp SINE Alu 0 404 1 276 197 0 70 chr13 9275593 9275627 -92597542 + GA-rich Low_complexity Low_complexity 2 30 -37 1883 92 0 34 chr13 9275627 9275889 -92597280 + AluSq SINE Alu 1 253 -60 276 197 0 70 chr13 9275889 9275925 -92597244 + GA-rich Low_complexity Low_complexity 30 67 0 1573 110 3 76 chr13 9276274 9276678 -92596491 + Charlie3 DNA MER1_type 1 2712 0 1186 136 0 0 chr13 9276693 9276869 -92596300 + AluSg/x SINE Alu 134 309 -1 248 304 71 9 chr13 9277152 9277264 -92595905 - MIR SINE MIR -131 131 13 257 299 62 21 chr13 9277473 9277570 -92595599 + MIR SINE MIR 111 211 -51 2276 95 0 0 chr13 9277583 9277904 -92595265 + AluSx SINE Alu 1 321 0 360 302 216 0 chr13 9278006 9278145 -92595024 - L2 LINE L2 0 3272 3104 335 299 76 45 chr13 9278838 9278953 -92594216 - MIR SINE MIR -87 175 52 1340 142 173 11 chr13 9278953 9279213 -92593956 - AluJo SINE Alu 0 302 1 335 299 76 45 chr13 9279213 9279254 -92593915 - MIR SINE MIR -210 52 14 749 268 52 28 chr13 9279377 9279627 -92593542 + L2 LINE L2 3058 3313 0 2323 78 3 7 chr13 9281408 9281701 -92591468 + AluSx SINE Alu 1 292 -20 739 205 82 69 chr13 9281911 9282103 -92591066 + MLT1D LTR MaLR 2 190 -200 823 148 0 52 chr13 9282103 9282238 -92590931 + FLAM_A SINE Alu 2 129 -4 739 205 82 69 chr13 9282238 9282419 -92590750 + MLT1D LTR MaLR 190 390 0 190 333 72 0 chr13 9282822 9282891 -92590278 + L2 LINE L2 3159 3232 -40 300 228 13 51 chr13 9283661 9283740 -92589429 - L1MC5 LINE L1 -243 7718 7643 852 186 0 0 chr13 9283795 9283919 -92589250 + FLAM_C SINE Alu 1 124 -19 24 53 0 0 chr13 9283919 9283957 -92589212 + AT_rich Low_complexity Low_complexity 1 38 0 218 32 32 0 chr13 9283969 9284000 -92589169 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1004 98 8 0 chr13 9284015 9284147 -92589022 + AluJb SINE Alu 156 288 -24 325 330 105 50 chr13 9287124 9287962 -92585207 + L2 LINE L2 859 1742 -1572 431 258 64 85 chr13 9288465 9288600 -92584569 - MIR SINE MIR -11 251 125 2709 155 31 0 chr13 9288600 9289019 -92584150 + MSTB1 LTR MaLR 1 432 0 431 258 64 85 chr13 9289019 9289112 -92584057 - MIR SINE MIR -137 125 32 260 277 160 25 chr13 9289157 9289276 -92583893 + L2 LINE L2 3138 3272 0 2232 119 48 23 chr13 9290233 9290586 -92582583 - THE1B LTR MaLR 0 364 3 852 189 7 0 chr13 9290997 9291145 -92582024 + FRAM SINE Alu 1 149 -17 436 292 32 39 chr13 9291825 9291979 -92581190 - L2 LINE L2 0 3313 3161 1799 158 17 69 chr13 9292425 9292844 -92580325 + MER57A LTR ERV1 7 403 0 1720 112 120 12 chr13 9293311 9293570 -92579599 + AluSg SINE Alu 3 289 -21 1641 120 8 37 chr13 9293583 9293825 -92579344 + AluSg SINE Alu 56 290 -20 189 246 35 35 chr13 9294783 9294840 -92578329 - L2 LINE L2 -28 3285 3229 278 294 48 63 chr13 9295253 9295379 -92577790 + MIR3 SINE MIR 55 178 -30 2121 112 4 0 chr13 9295536 9295812 -92577357 + AluSx SINE Alu 1 277 -35 216 0 0 0 chr13 9295816 9295840 -92577329 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 413 293 70 70 chr13 9296029 9296329 -92576840 + HAL1 LINE L1 1313 1612 -895 1236 209 116 16 chr13 9296330 9296950 -92576219 + L1ME2 LINE L1 5357 6087 -77 189 74 0 0 chr13 9296952 9296979 -92576190 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2385 109 3 0 chr13 9297009 9297360 -92575809 - AluSq SINE Alu 0 352 1 22 0 0 0 chr13 9297707 9297729 -92575440 + AT_rich Low_complexity Low_complexity 1 22 0 2142 128 0 0 chr13 9297847 9298137 -92575032 - AluSx SINE Alu -22 290 1 231 243 40 14 chr13 9298335 9298409 -92574760 + HAL1b LINE L1 828 903 -445 219 211 0 39 chr13 9298622 9298674 -92574495 + GA-rich Low_complexity Low_complexity 4 53 0 1190 124 5 57 chr13 9298919 9299136 -92574033 + AluJb SINE Alu 101 307 0 195 139 70 0 chr13 9299266 9299309 -92573860 - L2 LINE L2 -2 3311 3266 2245 83 7 0 chr13 9300964 9301269 -92571900 + AluSc SINE Alu 1 307 0 1518 224 62 3 chr13 9301370 9301722 -92571447 - MLT1A2 LTR MaLR -1 373 1 211 27 27 27 chr13 9302282 9302319 -92570850 + (CTGGGG)n Simple_repeat Simple_repeat 1 37 0 519 303 20 13 chr13 9305052 9305204 -92567965 + L2 LINE L2 3161 3313 0 512 107 0 0 chr13 9305833 9305908 -92567261 - MADE1 DNA Mariner 0 80 6 391 141 31 0 chr13 9305949 9306013 -92567156 - MER5B DNA MER1_type 0 178 113 2415 74 0 7 chr13 9306013 9306309 -92566860 + AluY SINE Alu 1 294 -17 590 95 0 0 chr13 9306607 9306688 -92566481 + THE1B LTR MaLR 56 136 -228 774 225 83 94 chr13 9306688 9307123 -92566046 - LTR7 LTR ERV1 0 450 21 1363 116 35 30 chr13 9307153 9307385 -92565784 + THE1B LTR MaLR 132 364 0 233 127 109 0 chr13 9307837 9307892 -92565277 - L1M4 LINE L1 -569 5615 5555 228 114 0 0 chr13 9307892 9307927 -92565242 - AluJo SINE Alu -8 294 260 1131 191 17 17 chr13 9307962 9308192 -92564977 + LTR32 LTR ERVL 232 461 -10 1590 175 15 4 chr13 9308199 9308462 -92564707 - AluJo SINE Alu -46 266 1 450 175 0 0 chr13 9308462 9308542 -92564627 - L1M4 LINE L1 -609 5565 5486 284 192 5 0 chr13 9309184 9309254 -92563915 - L1P LINE L1 -798 5370 5298 751 219 0 0 chr13 9309390 9309554 -92563615 - L1M4 LINE L1 -844 5302 5139 2084 105 3 20 chr13 9309965 9310259 -92562910 - AluSx SINE Alu -23 289 1 1784 152 43 23 chr13 9312948 9313251 -92559918 + AluJo SINE Alu 1 309 -3 2375 88 0 3 chr13 9314538 9314835 -92558334 + AluSx SINE Alu 1 296 -16 209 182 288 0 chr13 9315306 9315372 -92557797 - MIR SINE MIR 0 262 178 244 200 0 0 chr13 9315378 9315428 -92557741 - FLAM_C SINE Alu 0 164 115 961 143 0 0 chr13 9315452 9315585 -92557584 - FLAM_C SINE Alu 0 133 1 458 312 22 0 chr13 9315610 9315748 -92557421 - MIR SINE MIR -109 153 13 383 242 152 0 chr13 9315965 9316064 -92557105 + L2 LINE L2 3200 3313 0 1033 217 4 25 chr13 9316431 9316666 -92556503 + MLT1A1 LTR MaLR 1 230 -135 872 142 26 13 chr13 9316751 9316906 -92556263 + MLT1A1 LTR MaLR 208 364 -1 258 240 110 20 chr13 9318053 9318199 -92554970 + MER117 DNA MER1_type 3 161 -36 416 272 225 0 chr13 9318451 9318620 -92554549 + MIR SINE MIR 1 207 -55 180 339 119 53 chr13 9318741 9318968 -92554201 + MIR SINE MIR 10 251 -11 3001 144 38 6 chr13 9319003 9319529 -92553640 - L1MC3 LINE L1 -6 7779 7237 1256 174 161 156 chr13 9319529 9319570 -92553599 - MLT1A1 LTR MaLR 0 396 357 2521 76 3 6 chr13 9319570 9319884 -92553285 + AluSp SINE Alu 1 313 0 1256 174 161 156 chr13 9319884 9320234 -92552935 - MLT1A1 LTR MaLR -39 357 3 2007 168 26 19 chr13 9320234 9320651 -92552518 - L1MC3 LINE L1 -542 7243 6824 4075 179 68 28 chr13 9320657 9321595 -92551574 - L1MD2 LINE L1 -11 6348 5373 317 234 133 32 chr13 9322400 9322558 -92550611 + MLT1J LTR MaLR 331 504 -7 187 331 35 84 chr13 9323273 9323415 -92549754 + MIR SINE MIR 20 154 -108 2773 69 11 6 chr13 9324253 9324617 -92548552 - L1PA8 LINE L1 -2 6170 5805 258 257 148 29 chr13 9324901 9325016 -92548153 + MIR SINE MIR 26 153 -55 1370 203 59 59 chr13 9326291 9326749 -92546420 - LTR40b LTR ERVL -2 460 3 401 257 298 6 chr13 9327668 9327731 -92545438 - L2 LINE L2 -135 3178 3135 2240 135 0 0 chr13 9327731 9328043 -92545126 + AluSx SINE Alu 1 312 0 401 257 298 6 chr13 9328043 9328406 -92544763 - L2 LINE L2 -178 3135 2618 233 29 29 0 chr13 9328657 9328691 -92544478 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2341 102 0 31 chr13 9328698 9329020 -92544149 + AluSq SINE Alu 1 312 -1 350 277 0 11 chr13 9329936 9330030 -92543139 - LTR67 LTR ERVL 0 557 465 781 260 111 50 chr13 9330864 9331592 -92541577 + L1MDa LINE L1 1316 2127 -4452 560 261 79 10 chr13 9331645 9332160 -92541009 + L1MDa LINE L1 2202 2724 -3816 198 172 230 23 chr13 9332161 9332248 -92540921 + L3b LINE CR1 1364 1468 -115 548 128 0 0 chr13 9332930 9333024 -92540145 + AluJ/FRAM SINE Alu 218 311 -1 678 158 8 17 chr13 9333161 9333281 -92539888 + FLAM_A SINE Alu 1 119 -14 186 133 0 0 chr13 9333281 9333311 -92539858 + (CATA)n Simple_repeat Simple_repeat 3 32 0 864 261 9 9 chr13 9334005 9334220 -92538949 - MIR SINE MIR 0 262 48 444 266 93 0 chr13 9334433 9334572 -92538597 + MIR SINE MIR 85 236 -26 2129 117 13 3 chr13 9334641 9334939 -92538230 + AluSx SINE Alu 1 301 -11 566 313 22 28 chr13 9335299 9335478 -92537691 + MER91A DNA MER1_type 1 178 -18 1833 186 67 6 chr13 9336614 9336958 -92536211 + MLT1A1 LTR MaLR 1 365 0 2361 142 32 5 chr13 9337583 9337991 -92535178 + MSTB1 LTR MaLR 1 419 -13 8003 198 41 25 chr13 9337997 9338202 -92534967 + MSTB1-int LTR MaLR 1 201 -1450 1527 194 0 22 chr13 9338202 9338480 -92534689 + AluJb SINE Alu 30 301 -11 8003 198 41 25 chr13 9338480 9339898 -92533271 + MSTB1-int LTR MaLR 201 1651 0 2700 137 16 32 chr13 9339898 9340337 -92532832 + MSTB1 LTR MaLR 1 432 0 191 184 66 92 chr13 9340428 9340504 -92532665 + L2 LINE L2 2741 2814 -500 445 161 75 46 chr13 9340914 9341022 -92532147 + MLT1J1 LTR MaLR 19 129 -321 326 295 109 13 chr13 9341003 9341159 -92532010 + MLT1J2 LTR MaLR 156 326 -124 * 816 173 13 26 chr13 9341181 9341337 -92531832 - MER70A LTR ERVL 0 472 319 1095 185 129 29 chr13 9341338 9341500 -92531669 - THE1C LTR MaLR 0 375 231 3882 97 7 9 chr13 9341500 9342048 -92531121 - L1PA8 LINE L1 -5 6167 5621 1095 185 129 29 chr13 9342048 9342226 -92530943 - THE1C LTR MaLR -144 231 1 1362 167 3 167 chr13 9342228 9342611 -92530558 - MER70B LTR ERVL -258 320 1 1689 161 3 56 chr13 9342655 9342803 -92530366 + AluJo SINE Alu 1 124 -188 1960 169 3 0 chr13 9342803 9343099 -92530070 + AluSx SINE Alu 1 297 -15 1689 161 3 56 chr13 9343099 9343273 -92529896 + AluJo SINE Alu 124 306 -6 1912 204 19 69 chr13 9343868 9344389 -92528780 + MLT1E2 LTR MaLR 2 496 -130 1440 337 54 17 chr13 9344398 9345172 -92527997 + HERV16 LTR ERVL 2356 3091 -1905 2308 125 0 0 chr13 9345798 9346110 -92527059 - AluSx SINE Alu 0 312 1 378 322 25 0 chr13 9347127 9347248 -92525921 - L2 LINE L2 -1 3312 3189 426 39 0 0 chr13 9347408 9347460 -92525709 + (TG)n Simple_repeat Simple_repeat 2 53 0 503 306 48 68 chr13 9347464 9347774 -92525395 + L3 LINE CR1 369 672 -905 3653 213 49 21 chr13 9347825 9348606 -92524563 + L1MB8 LINE L1 4079 5001 -1173 236 77 26 0 chr13 9348606 9348645 -92524524 + (CA)n Simple_repeat Simple_repeat 1 40 0 3653 213 49 21 chr13 9348645 9349178 -92523991 + L1MB8 LINE L1 5001 5518 -656 2923 175 15 17 chr13 9349184 9349768 -92523401 + L1MB8 LINE L1 5591 6173 -5 283 162 0 29 chr13 9349769 9349837 -92523332 + GA-rich Low_complexity Low_complexity 2 67 0 2168 122 3 3 chr13 9350155 9350451 -92522718 - AluSx SINE Alu -16 296 1 2300 114 74 10 chr13 9350606 9351010 -92522159 + L1MB3 LINE L1 5752 6181 -2 922 165 18 18 chr13 9351789 9351953 -92521216 + FRAM SINE Alu 2 165 -1 2354 109 0 0 chr13 9352171 9352473 -92520696 + AluSg SINE Alu 1 302 -8 194 318 47 56 chr13 9353698 9353805 -92519364 + L2 LINE L2 3202 3307 -6 2109 108 4 0 chr13 9353994 9354292 -92518877 - AluSc SINE Alu 0 299 1 213 350 80 22 chr13 9357366 9357503 -92515666 - MER91A DNA MER1_type 0 196 52 21 36 0 0 chr13 9359002 9359030 -92514139 + AT_rich Low_complexity Low_complexity 1 28 0 309 261 169 8 chr13 9362228 9362358 -92510811 + MIR SINE MIR 8 158 -104 192 340 136 19 chr13 9362610 9362772 -92510397 - MIR SINE MIR -72 190 10 2542 194 18 6 chr13 9363190 9363685 -92509484 + L1MB3 LINE L1 5683 6183 0 366 286 11 0 chr13 9363809 9363900 -92509269 + MER91A DNA MER1_type 91 182 -14 261 352 47 16 chr13 9363969 9364097 -92509072 + L2 LINE L2 3132 3263 -9 250 244 0 39 chr13 9364097 9364175 -92508994 + GA-rich Low_complexity Low_complexity 1 75 0 183 80 0 0 chr13 9364531 9364556 -92508613 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 824 172 0 15 chr13 9364559 9364693 -92508476 - AluJo SINE Alu -178 134 3 199 200 22 0 chr13 9366060 9366105 -92507064 + MIR SINE MIR 90 135 -73 1208 247 71 40 chr13 9366500 9366878 -92506291 - L1ME3A LINE L1 -5 6165 5769 1664 159 22 57 chr13 9366878 9367193 -92505976 - AluJo SINE Alu -6 306 3 1208 247 71 40 chr13 9367193 9367235 -92505934 - L1ME3A LINE L1 -401 5769 5730 919 196 0 0 chr13 9368275 9368433 -92504736 + FAM SINE Alu 1 158 -17 372 59 0 0 chr13 9368435 9368486 -92504683 + (CA)n Simple_repeat Simple_repeat 1 51 0 255 102 82 10 chr13 9370561 9370659 -92502510 + (CA)n Simple_repeat Simple_repeat 2 106 0 407 175 305 19 chr13 9370916 9371070 -92502099 + MER69 DNA AcHobo 2189 2386 -140 366 181 42 0 chr13 9371079 9371151 -92502018 + FLAM_A SINE Alu 52 126 -7 470 98 85 12 chr13 9371167 9371331 -92501838 + (CA)n Simple_repeat Simple_repeat 1 176 0 908 163 60 0 chr13 9371331 9371497 -92501672 + AluJo SINE Alu 127 302 -10 272 178 30 24 chr13 9371608 9371691 -92501478 + MER69 DNA AcHobo 2420 2504 -22 24 0 0 0 chr13 9372478 9372502 -92500667 + AT_rich Low_complexity Low_complexity 1 24 0 1941 109 13 35 chr13 9372502 9372690 -92500479 - L1PB1 LINE L1 0 6151 5971 2391 101 3 0 chr13 9372690 9372998 -92500171 - AluSx SINE Alu -3 309 1 1941 109 13 35 chr13 9372998 9373121 -92500048 - L1PB1 LINE L1 -180 5971 5847 1054 96 0 0 chr13 9373122 9373258 -92499911 - AluJb SINE Alu -176 136 1 226 279 15 15 chr13 9573826 9573894 -92299275 - LTR16A LTR ERVL -5 445 378 3830 128 93 47 chr13 9573993 9574738 -92298431 + LTR1 LTR ERV1 7 785 0 2136 117 0 29 chr13 9575393 9575709 -92297460 - AluSx SINE Alu -5 307 1 21 0 0 0 chr13 9576007 9576028 -92297141 + AT_rich Low_complexity Low_complexity 1 21 0 1419 170 30 48 chr13 9576030 9576301 -92296868 - AluJo SINE Alu -22 290 25 252 157 39 0 chr13 9576869 9576920 -92296249 + MIR SINE MIR 200 252 -10 22 0 0 0 chr13 9577284 9577306 -92295863 + AT_rich Low_complexity Low_complexity 1 22 0 381 206 28 0 chr13 9577324 9577431 -92295738 + (TA)n Simple_repeat Simple_repeat 1 110 0 647 87 11 22 chr13 9577432 9577524 -92295645 - FLAM_A SINE Alu -19 123 33 2006 151 10 74 chr13 9577594 9577633 -92295536 - MLT1B LTR MaLR 0 390 350 2386 104 3 0 chr13 9577633 9577942 -92295227 + AluSp SINE Alu 1 310 -3 2006 151 10 74 chr13 9577942 9578319 -92294850 - MLT1B LTR MaLR -40 350 1 230 129 0 0 chr13 9579025 9579056 -92294113 + MER46A DNA MER2_type 2 32 -204 761 108 0 0 chr13 9579058 9579160 -92294009 - AluSp/q SINE Alu -18 295 194 689 115 10 10 chr13 9579160 9579264 -92293905 + MER46A DNA MER2_type 129 232 -4 1290 157 94 118 chr13 9579353 9579812 -92293357 + LTR7 LTR ERV1 1 448 -2 2924 3 0 3 chr13 9579910 9580222 -92292947 + AluYa5 SINE Alu 1 311 0 437 285 20 20 chr13 9580317 9580468 -92292701 + MLT1H LTR MaLR 155 305 -244 428 228 165 29 chr13 9580696 9580902 -92292267 + MLT1H LTR MaLR 315 548 -7 256 284 65 41 chr13 9581216 9581385 -92291784 + HAL1 LINE L1 473 645 -1862 1981 163 96 0 chr13 9581650 9582036 -92291133 - MSTB LTR MaLR 0 426 4 227 205 0 48 chr13 9582155 9582238 -92290931 + HAL1 LINE L1 999 1077 -1430 415 348 39 19 chr13 9582728 9582984 -92290185 - MIR SINE MIR 0 262 2 2242 118 0 13 chr13 9583080 9583393 -92289776 + AluSg SINE Alu 2 310 0 2548 190 58 17 chr13 9584172 9584689 -92288480 + MLT1F LTR MaLR 5 542 0 339 286 57 0 chr13 9585144 9585249 -92287920 - L1MC4 LINE L1 0 8042 7932 3966 155 33 19 chr13 9585250 9585979 -92287190 + L1PA16 LINE L1 5419 6157 -9 21 0 0 0 chr13 9585984 9586005 -92287164 + AT_rich Low_complexity Low_complexity 1 21 0 533 218 210 44 chr13 9586185 9586456 -92286713 - L1MC4 LINE L1 -249 7793 7478 440 192 3 33 chr13 9587131 9587241 -92285928 + L1PA16 LINE L1 5904 6009 -165 189 195 0 24 chr13 9587296 9587337 -92285832 - L3 LINE CR1 -1361 216 177 28 48 0 0 chr13 9588071 9588113 -92285056 + AT_rich Low_complexity Low_complexity 1 42 0 1680 133 39 0 chr13 9588433 9588688 -92284481 + AluJb SINE Alu 40 304 -8 2366 105 7 3 chr13 9588864 9589168 -92284001 + AluSx SINE Alu 1 305 -7 1736 195 55 3 chr13 9589214 9589557 -92283612 - MLT1A1 LTR MaLR 0 365 5 325 143 0 0 chr13 9589642 9589691 -92283478 - MER3 DNA MER1_type -6 203 155 1027 111 0 21 chr13 9589693 9589837 -92283332 + AluJb SINE Alu 1 141 -171 763 205 38 17 chr13 9589859 9590070 -92283099 - MER3 DNA MER1_type -43 166 2 2031 149 0 3 chr13 9590313 9590609 -92282560 - AluSx SINE Alu -17 295 1 370 340 28 7 chr13 9590750 9590891 -92282278 + MIR SINE MIR 8 151 -111 2431 84 3 0 chr13 9590891 9591188 -92281981 + AluSp SINE Alu 1 298 -15 2255 107 0 0 chr13 9591271 9591561 -92281608 - AluSx SINE Alu -22 290 1 365 360 49 0 chr13 9591710 9591874 -92281295 + L2 LINE L2 2884 3055 -217 186 250 0 0 chr13 9592072 9592112 -92281057 + MIR SINE MIR 217 256 -6 949 195 35 0 chr13 9592710 9592879 -92280290 + FAM SINE Alu 1 175 0 25 51 0 0 chr13 9593159 9593198 -92279971 + AT_rich Low_complexity Low_complexity 1 39 0 479 214 0 10 chr13 9593304 9593407 -92279762 - L2 LINE L2 -924 2390 2289 2039 104 14 0 chr13 9593440 9593720 -92279449 + AluSx SINE Alu 29 312 0 379 192 30 40 chr13 9593902 9593921 -92279248 - MER104 DNA Tc2 -1776 122 104 1956 156 7 7 chr13 9593921 9594228 -92278941 + AluSx SINE Alu 1 307 -5 379 192 30 40 chr13 9594228 9594307 -92278862 - MER104 DNA Tc2 -1794 104 25 2235 111 19 7 chr13 9594341 9594648 -92278521 + AluSx SINE Alu 1 311 -1 1996 132 24 7 chr13 9595307 9595603 -92277566 + AluSx SINE Alu 1 301 -11 474 207 180 0 chr13 9595661 9595811 -92277358 + MER104 DNA MER2_type 1 177 -3 866 165 0 0 chr13 9596527 9596660 -92276509 - FLAM_A SINE Alu 0 133 1 964 164 12 12 chr13 9596799 9596970 -92276199 - FAM SINE Alu 0 175 5 1453 243 121 27 chr13 9597025 9597632 -92275537 + MLT1E2 LTR MaLR 1 624 -2 1867 165 3 0 chr13 9598808 9599093 -92274076 + AluJo SINE Alu 1 286 -26 1022 176 16 5 chr13 9599291 9599478 -92273691 - MER5A DNA MER1_type 0 189 1 2158 89 57 0 chr13 9599579 9599861 -92273308 - AluSx SINE Alu -14 298 1 1723 176 13 20 chr13 9600221 9600522 -92272647 + AluJo SINE Alu 1 299 -13 665 292 26 13 chr13 9600628 9600854 -92272315 + MIR SINE MIR 21 249 -13 1376 138 61 122 chr13 9600884 9601196 -92271973 - AluJb SINE Alu -19 293 1 1467 208 0 14 chr13 9601283 9601577 -92271592 + AluSx SINE Alu 1 290 -22 521 165 0 0 chr13 9601720 9601799 -92271370 - AluJ/FLAM SINE Alu -232 80 2 2284 122 0 0 chr13 9601887 9602190 -92270979 + AluSx SINE Alu 1 303 -9 2491 53 0 23 chr13 9602190 9602491 -92270678 + AluY SINE Alu 1 294 -17 2001 193 78 76 chr13 9602558 9602816 -92270353 - HsTC2 DNA Tc2 -5 1893 1637 2233 112 0 0 chr13 9602816 9603112 -92270057 + AluSx SINE Alu 1 296 -16 2218 110 0 0 chr13 9603114 9603431 -92269738 + AluSx SINE Alu 1 317 0 2001 193 78 76 chr13 9603431 9603795 -92269374 - HsTC2 DNA Tc2 -261 1637 1265 227 236 97 14 chr13 9603800 9603872 -92269297 - HsTC2 DNA Tc2 -1778 120 43 3819 181 23 6 chr13 9603990 9604723 -92268446 - L1MB8 LINE L1 -6 6172 5427 1798 171 31 14 chr13 9604886 9605178 -92267991 - AluJo SINE Alu -13 299 3 1667 159 65 0 chr13 9605513 9605790 -92267379 - AluJb SINE Alu -17 295 1 1045 179 10 25 chr13 9606518 9606714 -92266455 - AluJ SINE Alu -13 299 107 809 143 80 116 chr13 9606714 9606738 -92266431 - THE1C LTR MaLR -1 374 351 3004 51 5 8 chr13 9606738 9607127 -92266042 + L1PA7 LINE L1 5767 6154 0 809 143 80 116 chr13 9607127 9607326 -92265843 - THE1C LTR MaLR -24 351 159 1120 122 0 0 chr13 9607327 9607504 -92265665 + AluSq SINE Alu 151 327 0 332 330 67 6 chr13 9607779 9607958 -92265211 + MIR SINE MIR 2 191 -71 859 154 70 6 chr13 9608502 9608658 -92264511 - THE1C LTR MaLR -207 168 3 705 173 0 0 chr13 9608662 9608772 -92264397 - AluJ SINE Alu -201 111 2 2073 147 0 0 chr13 9608834 9609133 -92264036 - AluSx SINE Alu -13 299 1 205 219 110 0 chr13 9609167 9609249 -92263920 - MIR SINE MIR -69 193 103 209 240 146 10 chr13 9609361 9609457 -92263712 + MIR SINE MIR 138 246 -16 189 385 120 8 chr13 9610522 9610639 -92262530 - MIR SINE MIR -113 149 20 2669 42 0 3 chr13 9611523 9611834 -92261335 + AluY SINE Alu 1 310 -1 277 175 0 35 chr13 9612895 9612952 -92260217 + Tigger4(Zombi) DNA MER2_type 4 58 -2673 1337 142 0 0 chr13 9612977 9613181 -92259988 + Tigger4(Zombi) DNA MER2_type 2528 2731 0 480 262 213 19 chr13 9613195 9613458 -92259711 + L1MC/D LINE L1 5506 5819 -1989 1942 162 7 0 chr13 9613541 9613838 -92259331 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr13 9614009 9614030 -92259139 + AT_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr13 9614286 9614334 -92258835 + (TG)n Simple_repeat Simple_repeat 2 49 0 575 258 150 45 chr13 9614345 9614399 -92258770 - L1ME4a LINE L1 0 6121 6074 2141 92 18 0 chr13 9614399 9614714 -92258455 + AluSx SINE Alu 6 325 0 575 258 150 45 chr13 9614714 9614833 -92258336 - L1ME4a LINE L1 -47 6074 5969 2393 78 7 0 chr13 9614833 9615129 -92258040 + AluSg SINE Alu 1 298 -12 575 258 150 45 chr13 9615129 9615280 -92257889 - L1ME4a LINE L1 -152 5969 5835 2047 130 41 0 chr13 9615280 9615573 -92257596 - AluSx SINE Alu -7 305 1 575 258 150 45 chr13 9615573 9615691 -92257478 - L1ME4a LINE L1 -286 5835 5629 339 235 117 34 chr13 9615709 9615888 -92257281 - MIR SINE MIR -59 203 10 371 200 60 67 chr13 9616125 9616140 -92257029 + MER112 DNA MER1_type 1 15 -245 2148 139 0 0 chr13 9616140 9616441 -92256728 - AluSx SINE Alu -11 301 1 371 200 60 67 chr13 9616441 9616575 -92256594 + MER112 DNA MER1_type 15 149 -111 2350 79 24 0 chr13 9616643 9616934 -92256235 - AluSp SINE Alu -15 298 1 1665 141 8 0 chr13 9617412 9617653 -92255516 - AluSx SINE Alu -69 243 1 2132 121 3 10 chr13 9618384 9618691 -92254478 + AluSq SINE Alu 2 306 -7 684 222 166 74 chr13 9619035 9619171 -92253998 - HAL1 LINE L1 -226 2281 2159 2044 94 0 0 chr13 9619171 9619425 -92253744 - AluSx SINE Alu -58 254 1 684 222 166 74 chr13 9619425 9619788 -92253381 - HAL1 LINE L1 -348 2159 1736 841 216 144 41 chr13 9619802 9620094 -92253075 - HAL1 LINE L1 -803 1704 1383 879 230 221 63 chr13 9620111 9620428 -92252741 - L1ME3A LINE L1 -8 6162 5754 405 0 0 0 chr13 9620428 9620473 -92252696 + (TA)n Simple_repeat Simple_repeat 2 46 0 879 230 221 63 chr13 9620473 9620598 -92252571 - L1ME3A LINE L1 -416 5754 5650 22 0 0 0 chr13 9620694 9620716 -92252453 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 9621033 9621062 -92252107 + AT_rich Low_complexity Low_complexity 1 29 0 1117 34 34 31 chr13 9621227 9621583 -92251586 + (TTTC)n Simple_repeat Simple_repeat 1 357 0 2285 88 0 0 chr13 9621667 9621972 -92251197 - AluSx SINE Alu 0 305 1 2540 60 3 3 chr13 9623358 9623659 -92249510 - AluSp SINE Alu -12 301 1 819 148 0 16 chr13 9623993 9624115 -92249054 + FLAM_A SINE Alu 6 125 -17 2446 93 0 3 chr13 9625893 9626203 -92246966 - AluSx SINE Alu -3 309 1 480 243 66 29 chr13 9626317 9626453 -92246716 - MLT1E3 LTR MaLR -430 194 54 3157 195 33 3 chr13 9627027 9627602 -92245567 + MER21B LTR ERV1 24 615 -248 546 223 142 9 chr13 9627755 9627966 -92245203 - HAL1 LINE L1 -1468 1039 801 518 158 12 0 chr13 9627972 9628054 -92245115 + FLAM_A SINE Alu 42 124 -18 221 128 43 0 chr13 9628141 9628188 -92244981 + (TTA)n Simple_repeat Simple_repeat 2 50 0 397 321 153 51 chr13 9628266 9628362 -92244807 - HAL1 LINE L1 -1932 575 490 925 173 74 40 chr13 9628362 9628463 -92244706 - MER3 DNA MER1_type 0 209 113 1931 150 0 29 chr13 9628463 9628777 -92244392 - AluJb SINE Alu -7 305 1 925 173 74 40 chr13 9628777 9628877 -92244292 - MER3 DNA MER1_type -96 113 1 397 321 153 51 chr13 9628877 9628893 -92244276 - HAL1 LINE L1 -2017 490 477 2172 105 3 3 chr13 9628893 9629189 -92243980 - AluSc SINE Alu -13 296 1 397 321 153 51 chr13 9629189 9629261 -92243908 - HAL1 LINE L1 -2030 477 414 1699 197 0 3 chr13 9629261 9629560 -92243609 - AluJo SINE Alu -14 298 1 397 321 153 51 chr13 9629560 9629803 -92243366 - HAL1 LINE L1 -2093 414 102 189 316 0 0 chr13 9629999 9630056 -92243113 - L2 LINE L2 -1 3312 3256 240 246 9 105 chr13 9630234 9630348 -92242821 + MLT1H LTR MaLR 434 536 -13 1825 119 0 19 chr13 9630444 9630704 -92242465 + AluSx SINE Alu 35 289 -23 3075 86 3 0 chr13 9630864 9631238 -92241931 + THE1C LTR MaLR 1 375 0 1501 189 54 0 chr13 9631792 9632072 -92241097 + AluJb SINE Alu 2 296 -16 1537 159 32 42 chr13 9632186 9632469 -92240700 - AluJb SINE Alu -31 281 2 2218 100 0 32 chr13 9632483 9632792 -92240377 - AluSx SINE Alu -13 299 1 199 338 13 13 chr13 9633027 9633104 -92240065 - L2 LINE L2 -1 3271 3195 194 300 56 33 chr13 9634256 9634346 -92238823 + L2 LINE L2 2630 2721 -593 1825 125 56 14 chr13 9634482 9634769 -92238400 - AluJo SINE Alu -13 299 1 955 218 70 35 chr13 9634893 9635209 -92237960 - L1MC4 LINE L1 0 8042 7716 207 114 0 0 chr13 9635468 9635503 -92237666 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 491 291 55 58 chr13 9635768 9636112 -92237057 + LTR16C LTR ERVL 149 491 0 462 235 25 86 chr13 9636135 9636297 -92236872 + MIR SINE MIR 29 180 -82 2612 33 0 3 chr13 9637809 9638108 -92235061 - AluY SINE Alu -5 306 9 2191 124 3 0 chr13 9638898 9639196 -92233973 + AluSq SINE Alu 1 299 -14 4041 118 31 2 chr13 9639208 9639818 -92233351 + L1MA5A LINE L1 5667 6294 -3 264 278 83 38 chr13 9640188 9640321 -92232848 + L2 LINE L2 3159 3297 -16 188 360 140 32 chr13 9640339 9640589 -92232580 - L3 LINE CR1 -7 1570 1294 873 164 24 18 chr13 9641532 9641697 -92231472 + MER5A DNA MER1_type 22 187 -2 220 253 232 0 chr13 9641706 9641805 -92231364 + L2 LINE L2 3151 3272 0 187 133 0 0 chr13 9642909 9642939 -92230230 + L2 LINE L2 3284 3313 0 596 326 62 27 chr13 9642944 9643315 -92229854 - L2 LINE L2 -1217 2097 1714 215 291 27 27 chr13 9643909 9644019 -92229150 - L2 LINE L2 -1232 2082 1973 238 291 184 50 chr13 9644061 9644556 -92228613 - L2 LINE L2 -1097 2217 1657 1964 92 92 0 chr13 9644815 9645088 -92228081 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr13 9645146 9645170 -92227999 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 9645192 9645213 -92227956 + AT_rich Low_complexity Low_complexity 1 21 0 1805 160 0 17 chr13 9646102 9646396 -92226773 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr13 9646757 9646779 -92226390 + AT_rich Low_complexity Low_complexity 1 22 0 1494 143 0 115 chr13 9646926 9647272 -92225897 + AluSx SINE Alu 1 309 0 365 279 39 10 chr13 9647825 9647929 -92225240 - MIR SINE MIR -109 153 47 487 204 265 20 chr13 9648342 9648489 -92224680 - MER5A DNA MER1_type -3 186 4 1661 170 47 7 chr13 9649081 9649381 -92223788 - MER58B DNA MER1_type 0 341 30 2234 95 3 26 chr13 9650119 9650425 -92222744 - AluSg SINE Alu -11 299 1 1308 214 126 53 chr13 9650912 9651000 -92222169 + MLT1C LTR MaLR 1 81 -386 1671 185 3 13 chr13 9651000 9651302 -92221867 + AluJo SINE Alu 1 299 -13 1308 214 126 53 chr13 9651302 9651648 -92221521 + MLT1C LTR MaLR 81 467 0 1893 123 41 0 chr13 9651670 9651939 -92221230 + AluSx SINE Alu 1 280 -32 741 254 51 42 chr13 9652250 9652467 -92220702 - MIR SINE MIR -30 232 14 786 155 0 23 chr13 9652957 9653086 -92220083 + FLAM_C SINE Alu 13 138 -5 2397 83 0 3 chr13 9654068 9654369 -92218800 - AluSg SINE Alu -10 300 1 25 31 0 0 chr13 9654593 9654625 -92218544 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 9654651 9654674 -92218495 + AT_rich Low_complexity Low_complexity 1 23 0 2025 143 0 10 chr13 9656421 9656729 -92216440 - AluJb SINE Alu -7 305 1 278 269 39 0 chr13 9657148 9657226 -92215943 + L2 LINE L2 3188 3268 -4 190 333 65 43 chr13 9658200 9658293 -92214876 + L2 LINE L2 3215 3309 -4 828 131 95 0 chr13 9658550 9658687 -92214482 + FRAM SINE Alu 6 155 -21 225 326 103 63 chr13 9659005 9659180 -92213989 + MIR3 SINE MIR 21 202 -6 354 210 20 20 chr13 9659570 9659670 -92213499 + L2 LINE L2 2446 2545 -769 721 210 57 19 chr13 9659676 9659833 -92213336 + MLT1A2 LTR MaLR 1 163 -211 1786 170 10 7 chr13 9659836 9660136 -92213033 + AluJo SINE Alu 1 301 -11 654 195 67 7 chr13 9660136 9660285 -92212884 + MLT1A2 LTR MaLR 230 387 -3 674 272 117 5 chr13 9660387 9660593 -92212576 + MIR SINE MIR 34 262 0 363 307 40 125 chr13 9660884 9661236 -92211933 + L2 LINE L2 2950 3271 -1 541 345 96 47 chr13 9661243 9661918 -92211251 + L2 LINE L2 2538 3259 -13 332 286 0 48 chr13 9662102 9662207 -92210962 - MER112 DNA MER1_type -160 100 1 343 280 113 54 chr13 9662350 9662518 -92210651 + MIR SINE MIR 77 254 -8 235 232 18 0 chr13 9663334 9663390 -92209779 - L2 LINE L2 0 3313 3257 262 288 0 0 chr13 9663463 9663522 -92209647 + L2 LINE L2 3209 3267 -5 708 174 137 31 chr13 9663724 9663885 -92209284 - AluJo SINE Alu -20 292 115 2290 72 3 7 chr13 9664821 9665113 -92208056 + AluY SINE Alu 1 291 -20 195 233 0 0 chr13 9665255 9665298 -92207871 + L2 LINE L2 2464 2506 -808 525 329 6 6 chr13 9665298 9665468 -92207701 + L2 LINE L2 2483 2652 -662 870 165 0 0 chr13 9665496 9665629 -92207540 - AluJo SINE Alu -179 133 1 201 294 29 0 chr13 9665631 9665699 -92207470 + L2 LINE L2 2689 2758 -556 1958 161 16 0 chr13 9665713 9666017 -92207152 + AluJb SINE Alu 1 309 -3 2105 86 53 30 chr13 9666017 9666317 -92206852 + AluSc SINE Alu 1 308 -1 726 230 22 0 chr13 9666347 9666486 -92206683 + FRAM SINE Alu 27 168 -8 260 183 0 17 chr13 9666501 9666561 -92206608 + GA-rich Low_complexity Low_complexity 2 60 0 29 0 0 0 chr13 9666563 9666592 -92206577 + AT_rich Low_complexity Low_complexity 1 29 0 691 276 171 27 chr13 9666595 9667064 -92206105 + L2 LINE L2 2772 3307 -6 23 0 0 0 chr13 9667157 9667180 -92205989 + AT_rich Low_complexity Low_complexity 1 23 0 1858 174 0 7 chr13 9667328 9667626 -92205543 + AluJb SINE Alu 1 296 -16 941 156 22 34 chr13 9667626 9667805 -92205364 + AluJb SINE Alu 134 310 -2 1701 124 84 4 chr13 9667872 9668146 -92205023 + AluSx SINE Alu 5 300 -12 527 247 109 64 chr13 9668234 9668501 -92204668 + L2 LINE L2 1645 1923 -1391 4955 201 25 8 chr13 9668666 9669713 -92203456 - L1 LINE L1 -1250 4896 3832 385 111 48 0 chr13 9672003 9672066 -92201103 - MIR3 SINE MIR -53 155 90 1751 122 45 17 chr13 9674045 9674380 -92198789 - MER4A LTR ERV1 0 664 262 467 101 0 14 chr13 9674395 9674464 -92198705 - MER4A LTR ERV1 -595 69 2 2254 94 7 0 chr13 9675247 9675535 -92197634 - AluSp SINE Alu -23 290 1 26 0 0 0 chr13 9675837 9675863 -92197306 + AT_rich Low_complexity Low_complexity 1 26 0 2189 117 0 0 chr13 9676165 9676465 -92196704 + AluSx SINE Alu 1 300 -12 197 266 0 16 chr13 9676480 9676544 -92196625 + MIR SINE MIR 186 248 -14 33 43 0 0 chr13 9676544 9676591 -92196578 + AT_rich Low_complexity Low_complexity 1 47 0 213 39 0 0 chr13 9676748 9676774 -92196395 + (T)n Simple_repeat Simple_repeat 1 26 0 888 150 13 39 chr13 9676892 9677045 -92196124 + FAM SINE Alu 18 166 -19 210 37 0 0 chr13 9677046 9677073 -92196096 + (CATA)n Simple_repeat Simple_repeat 4 30 0 2071 102 6 87 chr13 9678065 9678263 -92194906 - AluSx SINE Alu -6 306 94 273 57 0 0 chr13 9678263 9678298 -92194871 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2159 99 0 3 chr13 9678298 9678581 -92194588 - AluY SINE Alu -29 282 1 2071 102 6 87 chr13 9678581 9678714 -92194455 - AluSx SINE Alu -216 96 1 285 250 167 8 chr13 9678738 9678858 -92194311 - L1MC5 LINE L1 -58 7903 7765 915 126 0 15 chr13 9678995 9679130 -92194039 - AluSq/x SINE Alu -180 133 1 247 306 207 0 chr13 9680465 9680576 -92192593 + L2 LINE L2 3139 3272 0 1570 185 0 11 chr13 9680838 9681114 -92192055 + AluJo SINE Alu 24 296 -16 1952 161 3 0 chr13 9681334 9681644 -92191525 + AluSx SINE Alu 2 312 0 1658 167 10 20 chr13 9682041 9682340 -92190829 - AluJb SINE Alu -15 297 2 2043 150 3 0 chr13 9682347 9682641 -92190528 - AluSx SINE Alu -17 295 1 215 321 64 0 chr13 9682880 9682989 -92190180 - MIR SINE MIR -60 202 87 224 313 53 13 chr13 9682995 9683145 -92190024 + L2 LINE L2 2181 2336 -978 193 228 105 0 chr13 9683281 9683338 -92189831 + L2 LINE L2 3249 3311 -2 231 339 0 0 chr13 9683869 9683931 -92189238 + L2 LINE L2 3205 3266 -6 2299 138 109 0 chr13 9684328 9684712 -92188457 + MSTB LTR MaLR 1 426 0 891 152 0 0 chr13 9685135 9685267 -92187902 + FLAM_C SINE Alu 1 132 -1 2250 116 0 10 chr13 9685984 9686287 -92186882 + AluSx SINE Alu 1 300 -12 355 151 47 70 chr13 9687103 9687189 -92185980 - AluJ/FLAM SINE Alu -218 84 1 2512 53 7 3 chr13 9687626 9687925 -92185244 + AluY SINE Alu 1 300 -11 217 350 8 16 chr13 9688459 9688582 -92184587 - MIR3 SINE MIR -6 202 81 201 119 48 0 chr13 9689123 9689165 -92184004 + (TA)n Simple_repeat Simple_repeat 1 44 0 268 119 0 0 chr13 9689167 9689209 -92183960 - L1MB5 LINE L1 0 6174 6133 2357 62 42 0 chr13 9689209 9689498 -92183671 - AluY SINE Alu -10 301 1 3005 157 26 8 chr13 9689500 9690030 -92183139 - L1MB4 LINE L1 -355 5825 5286 458 247 75 107 chr13 9690024 9690144 -92183025 - L1ME4a LINE L1 -154 5967 5845 * 1921 166 0 0 chr13 9690144 9690434 -92182735 + AluSx SINE Alu 1 290 -22 458 247 75 107 chr13 9690434 9690445 -92182724 - L1ME4a LINE L1 -276 5845 5835 2260 95 3 0 chr13 9690445 9690749 -92182420 + AluSq SINE Alu 1 305 0 458 247 75 107 chr13 9690749 9691044 -92182125 - L1ME4a LINE L1 -286 5835 5553 1797 103 8 4 chr13 9691711 9691963 -92181206 - AluSx SINE Alu -3 309 57 2195 92 0 7 chr13 9692197 9692511 -92180658 + AluSc SINE Alu 1 312 0 2123 130 0 3 chr13 9692625 9692932 -92180237 + AluSx SINE Alu 1 306 -6 1666 141 15 27 chr13 9693118 9693380 -92179789 - AluJo SINE Alu -17 295 37 2330 93 0 22 chr13 9693557 9693870 -92179299 - AluSq SINE Alu -7 306 1 1904 156 7 0 chr13 9694070 9694385 -92178784 - AluJb SINE Alu 0 317 1 811 224 0 24 chr13 9694420 9694590 -92178579 + FRAM SINE Alu 1 166 0 207 209 0 0 chr13 9695187 9695230 -92177939 + T-rich Low_complexity Low_complexity 1 43 0 2259 99 0 3 chr13 9695357 9695641 -92177528 + AluSq SINE Alu 1 283 -30 193 28 0 56 chr13 9695660 9695696 -92177473 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1102 178 0 0 chr13 9696166 9696340 -92176829 + FAM SINE Alu 1 174 -1 2632 61 3 0 chr13 9696662 9696974 -92176195 - AluSq SINE Alu 0 313 1 333 256 120 73 chr13 9697259 9697493 -92175676 - L2 LINE L2 -37 3276 3032 2278 90 7 7 chr13 9698364 9698664 -92174505 + AluSx SINE Alu 1 300 -12 1579 63 5 0 chr13 9698665 9698854 -92174315 + AluSq SINE Alu 1 190 -123 1818 157 13 13 chr13 9699859 9700159 -92173010 + AluJo SINE Alu 1 300 -12 26 0 0 0 chr13 9700205 9700231 -92172938 + AT_rich Low_complexity Low_complexity 1 26 0 636 259 21 51 chr13 9700718 9700954 -92172215 + MIR SINE MIR 31 259 -3 505 113 0 0 chr13 9700967 9701047 -92172122 - FLAM_C SINE Alu 0 143 64 362 211 58 0 chr13 9701211 9701315 -92171854 + L1ME LINE L1 5685 5794 -327 801 159 0 8 chr13 9701492 9701618 -92171551 - FLAM_C SINE Alu -7 126 2 559 208 30 0 chr13 9701767 9701868 -92171301 + FLAM_A SINE Alu 1 104 -38 2515 67 0 0 chr13 9702666 9702964 -92170205 - AluY SINE Alu -13 298 1 365 169 0 11 chr13 9705708 9705797 -92167372 + CT-rich Low_complexity Low_complexity 2 89 0 23 33 0 0 chr13 9708022 9708052 -92165117 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 9708911 9708933 -92164236 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 9708985 9709013 -92164156 + GC_rich Low_complexity Low_complexity 1 28 0 243 114 0 0 chr13 9709097 9709141 -92164028 + (TG)n Simple_repeat Simple_repeat 1 44 0 324 285 0 39 chr13 9709432 9709562 -92163607 + L2 LINE L2 2218 2342 -972 387 172 17 0 chr13 9709767 9709825 -92163344 + MER2 DNA MER2_type 2 60 -285 1537 138 65 11 chr13 9709912 9710172 -92162997 + MER2 DNA MER2_type 72 345 0 185 170 21 0 chr13 9710226 9710273 -92162896 - L2 LINE L2 -164 3149 3102 * 204 300 20 0 chr13 9710271 9710321 -92162848 + MER91A DNA MER1_type 119 169 -27 501 251 46 11 chr13 9710386 9710561 -92162608 - L2 LINE L2 -524 2790 2610 1112 163 62 14 chr13 9710561 9710770 -92162399 + MER20 DNA MER1_type 1 219 0 1691 258 84 66 chr13 9710789 9710846 -92162323 - L2 LINE L2 -721 2593 2539 2407 76 0 3 chr13 9710846 9711149 -92162020 - AluY SINE Alu -9 302 1 1691 258 84 66 chr13 9711149 9711920 -92161249 - L2 LINE L2 -775 2539 1750 308 237 96 29 chr13 9712075 9712301 -92160868 - L1MC4 LINE L1 -211 7750 7504 1683 131 105 43 chr13 9713455 9713806 -92159363 + THE1C LTR MaLR 3 375 0 27 29 0 0 chr13 9713994 9714028 -92159141 + AT_rich Low_complexity Low_complexity 1 34 0 1056 184 112 18 chr13 9714123 9714346 -92158823 + MLT1F LTR MaLR 1 244 -298 683 183 37 92 chr13 9714350 9714514 -92158655 + MLT1F LTR MaLR 413 567 0 2420 62 10 7 chr13 9715171 9715477 -92157692 + AluY SINE Alu 1 307 -4 198 281 110 12 chr13 9715527 9715609 -92157560 + MER5B DNA MER1_type 50 139 -39 402 122 0 81 chr13 9715616 9715690 -92157479 + Tigger2 DNA MER2_type 2 69 -2649 * 2230 155 67 23 chr13 9715674 9715791 -92157378 + Tigger2 DNA MER2_type 2267 2377 -341 2614 94 24 13 chr13 9715791 9716174 -92156995 - L1PB2 LINE L1 -4 6147 5761 2230 155 67 23 chr13 9716174 9716489 -92156680 + Tigger2 DNA MER2_type 2377 2718 0 368 223 293 19 chr13 9716641 9716798 -92156371 - MIR SINE MIR -6 256 57 1602 108 117 4 chr13 9717391 9717631 -92155538 - AluSg SINE Alu -21 289 23 459 161 0 12 chr13 9717969 9718050 -92155119 + MER21B LTR ERV1 420 499 -364 291 302 0 47 chr13 9718235 9718321 -92154848 - L2 LINE L2 -46 3226 3145 425 179 0 21 chr13 9718349 9718444 -92154725 + (CATATA)n Simple_repeat Simple_repeat 3 95 0 213 333 50 30 chr13 9719169 9719268 -92153901 + MIR SINE MIR 20 120 -88 778 201 12 6 chr13 9719268 9719432 -92153737 - AluSx SINE Alu -8 302 138 593 134 0 0 chr13 9719431 9719513 -92153656 - AluSx SINE Alu -229 83 2 * 464 277 104 49 chr13 9719983 9720369 -92152800 + L1MC4a LINE L1 5617 6023 -1785 460 264 58 34 chr13 9720558 9720732 -92152437 - MIR3 SINE MIR -12 196 18 186 236 146 0 chr13 9720738 9720793 -92152376 - MIR SINE MIR -103 105 43 2029 105 0 51 chr13 9720887 9721202 -92151967 - AluSg SINE Alu -11 299 1 914 220 121 23 chr13 9721499 9721804 -92151365 - MER46C DNA MER2_type 0 338 4 229 276 105 59 chr13 9725140 9725379 -92147790 - L2 LINE L2 -739 2575 2326 730 187 187 11 chr13 9726038 9726220 -92146949 + MER20 DNA MER1_type 1 214 -5 195 339 122 26 chr13 9726456 9726645 -92146524 - L3 LINE CR1 -79 1498 1292 201 281 123 44 chr13 9728927 9729041 -92144128 - MIR SINE MIR -114 148 26 343 242 129 24 chr13 9729057 9729181 -92143988 - MER5A DNA MER1_type -16 173 37 992 249 143 27 chr13 9729308 9729920 -92143249 - L2 LINE L2 -8 3305 2629 2059 232 143 61 chr13 9729924 9730681 -92142488 + MER21B LTR ERV1 5 829 -34 2336 114 29 109 chr13 9730681 9730743 -92142426 + MER65A LTR ERV1 1 66 -379 1492 181 0 35 chr13 9730743 9731057 -92142112 + AluJo SINE Alu 1 303 -9 2336 114 29 109 chr13 9731057 9731478 -92141691 + MER65A LTR ERV1 66 445 0 2059 232 143 61 chr13 9731478 9731503 -92141666 + MER21B LTR ERV1 829 851 -12 911 186 133 8 chr13 9731510 9731758 -92141411 - L2 LINE L2 -677 2637 2359 401 87 0 29 chr13 9731843 9731912 -92141257 - AluSc SINE Alu 0 309 243 214 333 20 0 chr13 9732034 9732133 -92141036 + CT-rich Low_complexity Low_complexity 2 102 0 2084 104 14 0 chr13 9732354 9732641 -92140528 - AluSx SINE Alu -21 291 1 25 0 0 0 chr13 9732745 9732770 -92140399 + AT_rich Low_complexity Low_complexity 1 25 0 1287 174 19 84 chr13 9732837 9732931 -92140238 + MER58B DNA MER1_type 51 149 -2271 1998 109 14 14 chr13 9732931 9733259 -92139910 + AluSx SINE Alu 1 312 0 1287 174 19 84 chr13 9733259 9733475 -92139694 + MER58B DNA MER1_type 149 341 0 24 0 0 0 chr13 9733768 9733792 -92139377 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 9734566 9734595 -92138574 + AT_rich Low_complexity Low_complexity 1 29 0 1687 125 35 17 chr13 9734600 9734769 -92138400 - L1MB2 LINE L1 -32 6139 5961 2062 95 15 58 chr13 9734769 9735094 -92138075 - AluSx SINE Alu -1 311 1 1687 125 35 17 chr13 9735094 9735211 -92137958 - L1MB2 LINE L1 -210 5961 5848 2012 42 0 0 chr13 9735372 9735613 -92137556 - L1PA7 LINE L1 -200 5954 5714 2354 115 0 0 chr13 9735613 9735918 -92137251 - AluSg SINE Alu -5 305 1 1727 129 80 10 chr13 9736297 9736608 -92136561 + MER44D DNA MER2_type 1 603 -6 458 113 0 38 chr13 9736609 9736689 -92136480 - Tigger7 DNA MER2_type -63 2524 2448 2056 116 0 44 chr13 9736695 9737015 -92136154 + AluSx SINE Alu 1 306 -6 3778 167 42 3 chr13 9737027 9737667 -92135502 - Tigger7 DNA MER2_type -1821 666 2 752 298 97 25 chr13 9737718 9738753 -92134416 - L1ME3A LINE L1 -307 5863 4743 419 266 44 44 chr13 9739790 9739948 -92133221 + L1ME LINE L1 5618 5775 -346 719 165 0 0 chr13 9739969 9740078 -92133091 + FLAM_A SINE Alu 11 119 -23 1094 149 63 54 chr13 9740150 9740371 -92132798 - AluJb SINE Alu -7 305 83 425 293 83 13 chr13 9741367 9741524 -92131645 + MER5B DNA MER1_type 7 174 -4 539 233 25 0 chr13 9741527 9741647 -92131522 + MLT1L LTR MaLR 149 271 -344 31 26 0 0 chr13 9741971 9742009 -92131160 + AT_rich Low_complexity Low_complexity 1 38 0 42 65 0 0 chr13 9742064 9742141 -92131028 + AT_rich Low_complexity Low_complexity 1 77 0 2350 88 0 0 chr13 9742141 9742426 -92130743 + AluSc SINE Alu 1 285 -24 294 206 0 0 chr13 9742428 9742491 -92130678 + (TA)n Simple_repeat Simple_repeat 1 63 0 25 0 0 0 chr13 9742585 9742610 -92130559 + AT_rich Low_complexity Low_complexity 1 25 0 355 183 343 14 chr13 9742777 9742920 -92130249 - L1ME1 LINE L1 0 6166 5969 2309 90 3 3 chr13 9743616 9743916 -92129253 + AluSq SINE Alu 1 300 -13 291 273 106 30 chr13 9744319 9744451 -92128718 + MER5B DNA MER1_type 7 148 -30 1404 157 0 26 chr13 9745115 9745345 -92127824 - AluJo SINE Alu -12 300 77 385 158 12 18 chr13 9745402 9745486 -92127683 - AluJ/FLAM SINE Alu -235 67 6 692 116 290 0 chr13 9746489 9746627 -92126542 + Tigger4(Zombi) DNA MER2_type 2554 2731 0 2139 118 0 3 chr13 9746822 9747118 -92126051 - AluSx SINE Alu -17 295 1 2260 94 7 7 chr13 9747211 9747510 -92125659 + AluSq SINE Alu 1 299 -14 441 301 48 24 chr13 9748150 9748359 -92124810 - MIR SINE MIR -46 216 3 411 216 0 39 chr13 9748968 9749070 -92124099 + MIR SINE MIR 87 184 -78 846 192 150 16 chr13 9749787 9749980 -92123189 + MER20 DNA MER1_type 1 219 0 180 117 33 33 chr13 9751611 9751671 -92121498 + (CCG)n Simple_repeat Simple_repeat 3 62 0 36 0 0 0 chr13 9751725 9751761 -92121408 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr13 9751944 9751986 -92121183 + GC_rich Low_complexity Low_complexity 1 42 0 591 206 152 12 chr13 9754188 9754353 -92118816 + MIR SINE MIR 1 188 -74 2224 91 7 0 chr13 9754483 9754795 -92118374 - AluSq SINE Alu 0 313 1 2107 130 10 0 chr13 9755125 9755432 -92117737 - AluSx SINE Alu -2 310 1 1798 133 0 71 chr13 9755701 9755876 -92117293 - AluJb SINE Alu -10 302 159 2227 102 0 0 chr13 9755876 9756170 -92116999 - AluSc SINE Alu -15 294 1 1798 133 0 71 chr13 9756170 9756317 -92116852 - AluJb SINE Alu -153 159 3 620 142 239 0 chr13 9756319 9756432 -92116737 - AluJo SINE Alu -171 141 2 334 239 14 0 chr13 9756441 9756512 -92116657 + L2 LINE L2 3201 3272 0 2393 104 0 0 chr13 9756879 9757188 -92115981 - AluSx SINE Alu -1 311 3 216 0 0 0 chr13 9757190 9757214 -92115955 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 26 23 0 23 chr13 9757214 9757232 -92115937 + AT_rich Low_complexity Low_complexity 1 18 -25 2017 125 25 0 chr13 9757232 9757511 -92115658 - AluSg SINE Alu -24 286 1 26 23 0 23 chr13 9757511 9757536 -92115633 + AT_rich Low_complexity Low_complexity 18 43 0 2360 92 0 22 chr13 9757579 9757896 -92115273 - AluSq SINE Alu -3 310 1 2436 67 10 6 chr13 9757897 9758209 -92114960 - AluSq SINE Alu 0 313 1 1564 138 5 0 chr13 9758340 9758558 -92114611 - AluSq SINE Alu -94 219 1 2484 53 10 7 chr13 9759348 9759652 -92113517 + AluSq SINE Alu 9 313 0 2360 92 0 22 chr13 9759653 9759970 -92113199 + AluSq SINE Alu 1 310 -3 26 23 0 23 chr13 9760013 9760038 -92113131 + AT_rich Low_complexity Low_complexity 1 26 -17 2017 125 25 0 chr13 9760038 9760317 -92112852 + AluSg SINE Alu 1 286 -24 26 23 0 23 chr13 9760317 9760335 -92112834 + AT_rich Low_complexity Low_complexity 26 43 0 216 0 0 0 chr13 9760335 9760359 -92112810 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1624 161 45 3 chr13 9760361 9760652 -92112517 + AluSx SINE Alu 3 305 -7 2141 130 0 0 chr13 9760681 9760989 -92112180 + AluSx SINE Alu 1 308 -4 1559 161 21 25 chr13 9761922 9762280 -92110889 + L1MB7 LINE L1 5451 5809 -375 1559 171 45 10 chr13 9762280 9762590 -92110579 + L1MB7 LINE L1 5864 6184 0 685 217 92 26 chr13 9762969 9763121 -92110048 + AluJo SINE Alu 121 282 -30 467 137 27 0 chr13 9763122 9763195 -92109974 - AluS SINE Alu -9 300 226 539 125 0 0 chr13 9763209 9763289 -92109880 - AluJ/FRAM SINE Alu -9 303 224 420 120 93 0 chr13 9763314 9763389 -92109780 - AluSc SINE Alu 0 309 228 180 0 0 0 chr13 9763389 9763409 -92109760 + (TC)n Simple_repeat Simple_repeat 2 21 0 556 69 28 0 chr13 9763409 9763481 -92109688 - Alu SINE Alu -16 294 221 189 0 0 0 chr13 9763481 9763502 -92109667 + (TC)n Simple_repeat Simple_repeat 2 22 0 477 97 111 0 chr13 9763502 9763574 -92109595 - AluJ/FRAM SINE Alu -10 302 223 1560 140 63 28 chr13 9763588 9763873 -92109296 - AluJb SINE Alu -15 297 3 998 153 0 64 chr13 9763880 9764083 -92109086 + AluJo SINE Alu 110 299 -13 817 207 17 86 chr13 9764097 9764329 -92108840 + MER102b DNA MER1_type 115 330 -11 189 0 0 0 chr13 9764481 9764502 -92108667 + (T)n Simple_repeat Simple_repeat 1 21 0 1799 108 97 4 chr13 9764532 9764801 -92108368 - AluSx SINE Alu -18 294 1 470 253 79 75 chr13 9764880 9764949 -92108220 - MIR SINE MIR -9 253 186 1982 146 0 7 chr13 9764949 9765244 -92107925 + AluSx SINE Alu 6 298 -14 470 253 79 75 chr13 9765244 9765415 -92107754 - MIR SINE MIR -76 186 12 285 155 84 42 chr13 9765582 9765653 -92107516 + MER112 DNA MER1_type 78 151 -109 852 147 12 53 chr13 9766545 9766715 -92106454 + AluJb SINE Alu 129 291 -21 299 229 153 10 chr13 9766730 9766834 -92106335 + L1ME LINE L1 5689 5805 -316 1110 155 0 12 chr13 9767027 9767195 -92105974 - FRAM SINE Alu 0 166 1 1162 81 0 0 chr13 9767219 9767367 -92105802 - AluSg/x SINE Alu 0 312 165 193 329 118 18 chr13 9767516 9767744 -92105425 + L2 LINE L2 2048 2298 -1016 756 250 52 48 chr13 9767950 9768198 -92104971 + MIR SINE MIR 14 262 0 183 129 0 0 chr13 9768644 9768675 -92104494 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 607 147 190 17 chr13 9768768 9768884 -92104285 - FLAM_A SINE Alu -6 136 1 203 295 0 16 chr13 9769085 9769146 -92104023 + CT-rich Low_complexity Low_complexity 3 62 0 1792 106 37 0 chr13 9770200 9770445 -92102724 - AluSx SINE Alu -11 301 48 206 250 0 0 chr13 9770605 9770645 -92102524 + polypyrimidine Low_complexity Low_complexity 5 44 0 490 217 191 82 chr13 9770793 9771025 -92102144 - MIR SINE MIR -6 256 2 23 0 0 0 chr13 9771103 9771126 -92102043 + AT_rich Low_complexity Low_complexity 1 23 0 1711 157 6 38 chr13 9771142 9771455 -92101714 - AluJo SINE Alu -9 303 1 286 324 7 20 chr13 9771677 9771825 -92101344 + L2 LINE L2 2431 2576 -738 1949 157 3 0 chr13 9771976 9772276 -92100893 - AluJb SINE Alu -11 301 1 942 134 0 0 chr13 9772950 9773077 -92100092 + FLAM_C SINE Alu 1 127 -6 548 136 17 17 chr13 9773086 9773204 -92099965 + GA-rich Low_complexity Low_complexity 5 122 0 2258 129 3 0 chr13 9773383 9773692 -92099477 - AluSx SINE Alu -1 311 2 363 338 72 7 chr13 9774240 9774379 -92098790 - MIR3 SINE MIR -45 163 16 22 35 0 0 chr13 9776614 9776643 -92096526 + AT_rich Low_complexity Low_complexity 1 29 0 1710 155 53 0 chr13 9776843 9777008 -92096161 - AluJb SINE Alu -9 303 115 459 0 0 0 chr13 9777008 9777059 -92096110 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1710 155 53 0 chr13 9777059 9777177 -92095992 - AluJb SINE Alu -197 115 5 239 106 43 0 chr13 9777236 9777283 -92095886 + (CATA)n Simple_repeat Simple_repeat 4 52 0 796 166 0 50 chr13 9777577 9777716 -92095453 + FLAM_A SINE Alu 1 132 -1 2169 107 31 0 chr13 9778092 9778382 -92094787 - AluSx SINE Alu -7 305 7 198 0 0 0 chr13 9778389 9778411 -92094758 + (A)n Simple_repeat Simple_repeat 1 22 0 2033 146 10 0 chr13 9778700 9779001 -92094168 + AluSx SINE Alu 1 304 -8 843 146 0 16 chr13 9779034 9779157 -92094012 + FRAM SINE Alu 36 156 -20 2413 209 103 70 chr13 9779313 9779395 -92093774 + L1ME1 LINE L1 4811 4889 -1277 2385 91 0 3 chr13 9779395 9779692 -92093477 - AluSq SINE Alu -17 296 1 2413 209 103 70 chr13 9779692 9779764 -92093405 + L1ME1 LINE L1 4889 4957 -1209 1610 178 80 0 chr13 9779764 9780050 -92093119 + AluJb SINE Alu 1 309 -3 2413 209 103 70 chr13 9780050 9780249 -92092920 + L1ME1 LINE L1 4957 5148 -1018 2267 100 3 0 chr13 9780249 9780549 -92092620 + AluY SINE Alu 1 301 -10 2413 209 103 70 chr13 9780549 9780570 -92092599 + L1ME1 LINE L1 5148 5167 -999 784 161 8 0 chr13 9780570 9780694 -92092475 + FLAM_C SINE Alu 1 125 -8 2413 209 103 70 chr13 9780694 9781071 -92092098 + L1ME1 LINE L1 5167 5530 -636 2326 97 0 13 chr13 9781071 9781381 -92091788 + AluSx SINE Alu 1 306 -6 2413 209 103 70 chr13 9781381 9781870 -92091299 + L1ME1 LINE L1 5530 6091 -75 1765 136 11 18 chr13 9781875 9782154 -92091015 + AluJo SINE Alu 1 277 -35 651 184 32 16 chr13 9782194 9782319 -92090850 + FLAM_A SINE Alu 1 127 -6 266 184 92 13 chr13 9782372 9782448 -92090721 + L1MB7 LINE L1 6103 6184 0 402 338 91 29 chr13 9782448 9782679 -92090490 + L2 LINE L2 2305 2520 -794 2511 120 2 85 chr13 9782679 9782730 -92090439 - L1MB3 LINE L1 -2 6181 6127 2431 72 3 0 chr13 9782730 9783023 -92090146 - AluSp SINE Alu -19 294 1 2511 120 2 85 chr13 9783023 9783454 -92089715 - L1MB3 LINE L1 -56 6127 5739 402 338 91 29 chr13 9783454 9783630 -92089539 + L2 LINE L2 2520 2737 -577 995 281 131 30 chr13 9783700 9783829 -92089340 - L3 LINE CR1 -163 1414 1299 2531 77 0 0 chr13 9783829 9784140 -92089029 - AluY SINE Alu 0 311 1 995 281 131 30 chr13 9784140 9784477 -92088692 - L3 LINE CR1 -278 1299 901 1482 75 0 21 chr13 9785621 9785808 -92087361 - AluSg/x SINE Alu -44 268 86 5427 105 0 4 chr13 9785808 9786563 -92086606 - L1PA15 LINE L1 -1 6164 5413 877 144 0 0 chr13 9786565 9786690 -92086479 + AluSg/x SINE Alu 164 288 -22 2080 132 0 0 chr13 9787103 9787424 -92085745 - AluSx SINE Alu 0 321 1 2176 118 0 35 chr13 9787426 9787740 -92085429 - AluSx SINE Alu -9 303 1 1597 213 2 82 chr13 9788401 9788818 -92084351 + MSTD LTR MaLR 13 396 0 875 197 0 0 chr13 9788858 9789010 -92084159 - AluJo/FRAM SINE Alu -14 288 137 1340 123 5 0 chr13 9789013 9789200 -92083969 - AluSg/x SINE Alu -7 303 116 998 101 0 0 chr13 9789200 9789338 -92083831 - AluSg/x SINE Alu -12 298 161 982 187 17 74 chr13 9789364 9789594 -92083575 - AluJo SINE Alu -92 220 4 207 0 0 0 chr13 9789823 9789846 -92083323 + (TTTAG)n Simple_repeat Simple_repeat 1 23 0 331 167 83 0 chr13 9789846 9789906 -92083263 - AluSg/x SINE Alu -21 279 215 29 28 0 0 chr13 9790005 9790041 -92083128 + AT_rich Low_complexity Low_complexity 1 36 0 500 185 11 0 chr13 9790700 9790792 -92082377 - L2 LINE L2 0 3313 3221 582 212 0 103 chr13 9791104 9791318 -92081851 - AluSg/x SINE Alu 0 329 133 277 324 171 0 chr13 9792773 9792878 -92080291 + MER5B DNA MER1_type 4 126 -52 323 167 0 14 chr13 9792933 9793005 -92080164 + CT-rich Low_complexity Low_complexity 1 71 0 804 149 0 0 chr13 9793005 9793119 -92080050 - FLAM_A SINE Alu -17 125 12 258 130 19 37 chr13 9793142 9793196 -92079973 + MER5B DNA MER1_type 126 178 0 1471 147 34 8 chr13 9793541 9793807 -92079362 - AluSp SINE Alu -19 294 22 3638 137 97 9 chr13 9794734 9795404 -92077765 - L1MB4 LINE L1 0 6180 5452 21 0 0 0 chr13 9797909 9797930 -92075239 + AT_rich Low_complexity Low_complexity 1 21 0 1798 175 243 109 chr13 9798218 9798990 -92074179 - MER52C LTR ERV1 0 1278 211 226 302 101 0 chr13 9799418 9799547 -92073622 - MIR SINE MIR 0 262 121 259 176 39 0 chr13 9800093 9800144 -92073025 - L1ME LINE L1 -477 5644 5592 234 328 47 8 chr13 9800359 9800487 -92072682 - L2 LINE L2 -9 3304 3172 2681 209 59 13 chr13 9800513 9800894 -92072275 + MER82 DNA MER2_type 1 422 -231 2531 65 0 0 chr13 9800894 9801204 -92071965 + AluY SINE Alu 1 310 -1 2681 209 59 13 chr13 9801204 9801433 -92071736 + MER82 DNA MER2_type 422 639 -14 1854 146 4 4 chr13 9801571 9801845 -92071324 - AluSx SINE Alu -36 276 3 397 200 0 0 chr13 9801847 9801917 -92071252 + MLT1A1 LTR MaLR 296 365 0 1983 281 177 29 chr13 9802009 9803574 -92069595 - L2 LINE L2 -1278 2036 240 2201 143 0 0 chr13 9803644 9803952 -92069217 + AluSx SINE Alu 1 308 -4 347 152 105 0 chr13 9803985 9804051 -92069118 - AluJ/FLAM SINE Alu -240 62 1 24 32 0 0 chr13 9804626 9804657 -92068512 + AT_rich Low_complexity Low_complexity 1 31 0 881 177 0 0 chr13 9804693 9804834 -92068335 - AluJo SINE Alu -171 141 1 1646 171 161 18 chr13 9805468 9805902 -92067267 + LTR54B LTR ERV1 1 496 -2 2116 121 3 3 chr13 9806550 9806848 -92066321 - AluSx SINE Alu -14 298 1 209 321 127 19 chr13 9808670 9808882 -92064287 - L2 LINE L2 -23 3249 3015 2294 81 0 16 chr13 9809078 9809387 -92063782 + AluY SINE Alu 1 304 -7 2280 126 3 0 chr13 9809715 9810017 -92063152 - AluSg SINE Alu -7 303 1 286 315 82 7 chr13 9810723 9810869 -92062300 - L1ME LINE L1 -398 5772 5616 666 0 0 0 chr13 9811045 9811119 -92062050 - tRNA-Asn-AAC tRNA tRNA -3 74 1 21 57 0 0 chr13 9811305 9811340 -92061829 + GC_rich Low_complexity Low_complexity 1 35 0 370 213 104 91 chr13 9811643 9811864 -92061305 - MER106A DNA MER1_type -11 225 2 2371 55 26 16 chr13 9811968 9812275 -92060894 - AluSg SINE Alu 0 310 1 3382 148 142 5 chr13 9812279 9812936 -92060233 - L1MB3 LINE L1 -52 6131 5385 1268 72 55 6 chr13 9813468 9813649 -92059520 + AluY SINE Alu 1 190 -121 542 143 59 8 chr13 9813749 9813868 -92059301 + AluY SINE Alu 187 311 0 398 278 24 16 chr13 9814601 9814727 -92058442 + L2 LINE L2 3185 3311 -2 3640 119 88 54 chr13 9814844 9815572 -92057597 + L1MA9 LINE L1 5474 6234 -66 306 0 0 0 chr13 9815572 9815606 -92057563 + (TG)n Simple_repeat Simple_repeat 2 35 0 3640 119 88 54 chr13 9815606 9815671 -92057498 + L1MA9 LINE L1 6234 6295 -5 625 255 75 19 chr13 9815842 9816054 -92057115 + L1ME LINE L1 5566 5789 -332 1767 138 0 44 chr13 9816058 9816190 -92056979 + AluJo SINE Alu 11 147 -165 2018 128 34 0 chr13 9816190 9816487 -92056682 + AluSx SINE Alu 5 311 -1 1767 138 0 44 chr13 9816487 9816651 -92056518 + AluJo SINE Alu 147 294 -18 1611 139 75 78 chr13 9816807 9817181 -92055988 + THE1C LTR MaLR 3 375 0 22 56 0 0 chr13 9817185 9817221 -92055948 + AT_rich Low_complexity Low_complexity 1 36 0 5651 127 14 33 chr13 9817221 9818241 -92054928 - L1PA16 LINE L1 -9 6157 5155 2442 161 47 5 chr13 9818267 9818715 -92054454 - Charlie1b DNA MER1_type -22 501 35 2382 85 0 26 chr13 9819195 9819502 -92053667 + AluSx SINE Alu 1 299 -13 2140 99 28 0 chr13 9819513 9819797 -92053372 + AluSq SINE Alu 3 294 -19 433 307 0 7 chr13 9820979 9821119 -92052050 + MIR3 SINE MIR 63 201 -7 368 300 122 6 chr13 9823008 9823188 -92049981 + MIR SINE MIR 23 223 -39 205 220 0 51 chr13 9823914 9823973 -92049196 + G-rich Low_complexity Low_complexity 3 58 0 285 239 109 0 chr13 9824943 9825035 -92048134 - L2 LINE L2 -5 3267 3166 366 333 35 28 chr13 9825236 9825380 -92047789 - L2 LINE L2 -20 3252 3108 21 0 0 0 chr13 9826234 9826255 -92046914 + AT_rich Low_complexity Low_complexity 1 21 0 1961 125 11 3 chr13 9826256 9826543 -92046626 + AluSx SINE Alu 1 289 -23 446 48 0 16 chr13 9826548 9826610 -92046559 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 312 298 232 33 chr13 9827115 9827417 -92045752 - L3 LINE CR1 -7 1570 1209 2276 116 3 0 chr13 9827468 9827771 -92045398 + AluSx SINE Alu 1 304 -8 1901 143 0 31 chr13 9827782 9828075 -92045094 + AluJb SINE Alu 1 310 0 195 0 39 0 chr13 9828075 9828101 -92045068 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 562 266 129 63 chr13 9828145 9828525 -92044644 - L2 LINE L2 -86 3227 2823 668 282 20 15 chr13 9828552 9828747 -92044422 - L3 LINE CR1 -399 1178 983 2262 77 3 33 chr13 9828816 9829116 -92044053 - AluSx SINE Alu -13 299 9 561 184 123 18 chr13 9829280 9829394 -92043775 - FLAM_A SINE Alu -7 126 1 591 320 110 10 chr13 9829453 9829744 -92043425 - L3 LINE CR1 -708 869 550 344 49 0 0 chr13 9829844 9829885 -92043284 + AluSq/x SINE Alu 111 151 -152 210 118 0 0 chr13 9829886 9829920 -92043249 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2231 116 0 3 chr13 9829927 9830230 -92042939 - AluSx SINE Alu -9 303 2 251 237 26 0 chr13 9830311 9830387 -92042782 + MIR SINE MIR 44 121 -87 3253 257 125 28 chr13 9830464 9831835 -92041334 + HAL1 LINE L1 1 1504 -1003 1808 159 3 41 chr13 9831852 9832216 -92040953 + AluJo SINE Alu 1 352 0 626 153 10 0 chr13 9832306 9832404 -92040765 + FLAM_C SINE Alu 24 122 -21 25 31 0 0 chr13 9832405 9832437 -92040732 + AT_rich Low_complexity Low_complexity 1 32 0 2724 35 0 9 chr13 9832440 9832758 -92040411 + AluYb8 SINE Alu 1 315 -3 207 0 0 0 chr13 9832774 9832797 -92040372 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2221 107 3 0 chr13 9832953 9833262 -92039907 + AluSp SINE Alu 1 310 0 2108 142 3 0 chr13 9833358 9833667 -92039502 + AluSq SINE Alu 1 310 -3 266 73 24 0 chr13 9833667 9833708 -92039461 + (GGA)n Simple_repeat Simple_repeat 1 42 0 1425 232 62 22 chr13 9833716 9834087 -92039082 + L1MD3 LINE L1 7601 7986 -9 2185 108 24 0 chr13 9835534 9835821 -92037348 + AluSx SINE Alu 3 296 -16 1909 166 0 3 chr13 9835946 9836253 -92036916 + AluJb SINE Alu 1 306 -6 2038 157 0 6 chr13 9836402 9836715 -92036454 - AluSx SINE Alu -1 311 1 553 214 132 6 chr13 9836716 9836875 -92036294 - MIR SINE MIR -76 186 8 398 455 56 108 chr13 9837134 9837365 -92035804 + MER20 DNA MER1_type 1 219 0 336 309 50 40 chr13 9838055 9838256 -92034913 + MIR SINE MIR 35 237 -25 1619 267 127 24 chr13 9838523 9838835 -92034334 + MER69 DNA AcHobo 2 280 -2246 1835 172 3 7 chr13 9838835 9839132 -92034037 - AluJb SINE Alu -14 298 3 1619 267 127 24 chr13 9839132 9839411 -92033758 + MER69 DNA AcHobo 280 654 -1872 419 191 134 9 chr13 9839410 9839600 -92033569 + MER69 DNA AcHobo 2238 2525 -1 * 1948 98 68 11 chr13 9839625 9839891 -92033278 - AluSx SINE Alu -13 299 19 22 0 0 0 chr13 9841663 9841685 -92031484 + AT_rich Low_complexity Low_complexity 1 22 0 940 181 62 5 chr13 9842147 9842268 -92030901 - L1PA13 LINE L1 0 6163 6043 2261 133 60 85 chr13 9842268 9842751 -92030418 - L1MB3 LINE L1 -158 6025 5555 1183 184 34 41 chr13 9842751 9843018 -92030151 - AluJo SINE Alu -17 295 31 2362 96 0 10 chr13 9843676 9843979 -92029190 - AluSx SINE Alu -12 300 1 388 283 57 25 chr13 9843981 9844140 -92029029 - L1MD3 LINE L1 -24 7971 7808 2358 89 0 0 chr13 9844208 9844499 -92028670 + AluSx SINE Alu 1 291 -21 401 323 58 35 chr13 9844631 9844857 -92028312 + MIR SINE MIR 20 250 -12 225 0 0 0 chr13 9845715 9845740 -92027429 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 563 267 41 26 chr13 9846252 9846518 -92026651 - L1ME4a LINE L1 -236 5885 5616 1911 133 3 11 chr13 9846527 9846847 -92026322 - AluSx SINE Alu 0 318 1 242 246 35 0 chr13 9847668 9847725 -92025444 + MIR SINE MIR 194 252 -10 200 246 18 0 chr13 9847780 9847837 -92025332 + (TA)n Simple_repeat Simple_repeat 1 58 0 2061 124 0 13 chr13 9848582 9848881 -92024288 - AluSx SINE Alu -17 295 1 344 234 65 57 chr13 9849892 9850016 -92023153 + L2 LINE L2 3170 3294 -19 2336 109 0 0 chr13 9850066 9850370 -92022799 - AluSq SINE Alu -9 304 1 2165 94 35 3 chr13 9850370 9850658 -92022511 - AluSq SINE Alu -16 297 1 205 270 40 40 chr13 9851234 9851308 -92021861 + MER5A DNA MER1_type 47 120 -69 1420 156 37 12 chr13 9851343 9851586 -92021583 + AluJo SINE Alu 3 251 -61 221 219 27 41 chr13 9851612 9851685 -92021484 - MIR SINE MIR -6 256 185 444 271 132 40 chr13 9852148 9852451 -92020718 - MER102b DNA MER1_type -10 331 1 1770 138 57 3 chr13 9852787 9853069 -92020100 - AluJb SINE Alu -15 297 1 216 163 0 0 chr13 9853980 9854023 -92019146 + (CCG)n Simple_repeat Simple_repeat 2 44 0 429 104 0 0 chr13 9854028 9854105 -92019064 + (GGCTG)n Simple_repeat Simple_repeat 3 79 0 1077 156 8 107 chr13 9854441 9854684 -92018485 + MER20 DNA MER1_type 1 219 0 2251 113 0 0 chr13 9855429 9855755 -92017414 - AluSg SINE Alu 0 326 1 22 0 0 0 chr13 9855873 9855895 -92017274 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 9855960 9855982 -92017187 + AT_rich Low_complexity Low_complexity 1 22 0 346 297 163 29 chr13 9856433 9856642 -92016527 - MIR SINE MIR -10 252 16 207 114 45 0 chr13 9858068 9858112 -92015057 + L2 LINE L2 3268 3313 0 705 183 15 22 chr13 9858520 9858657 -92014512 - FLAM_A SINE Alu -6 136 1 2066 89 71 0 chr13 9859737 9860006 -92013163 - AluSc SINE Alu -17 292 5 187 30 30 30 chr13 9860534 9860567 -92012602 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2272 97 0 10 chr13 9860652 9860951 -92012218 + AluSq SINE Alu 1 296 -17 859 120 0 0 chr13 9861170 9861287 -92011882 + FLAM_C SINE Alu 1 117 -16 383 290 32 0 chr13 9861370 9861494 -92011675 - L2 LINE L2 0 3313 3186 520 76 0 0 chr13 9862608 9862674 -92010495 - Alu SINE Alu -15 297 232 2043 115 27 7 chr13 9863253 9863549 -92009620 - AluSx SINE Alu -10 302 1 791 91 16 0 chr13 9863694 9863815 -92009354 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 740 154 0 41 chr13 9863815 9863938 -92009231 - FLAM_C SINE Alu -24 119 2 438 296 89 12 chr13 9863945 9864114 -92009055 - MIR SINE MIR -70 192 11 547 209 27 0 chr13 9864119 9864229 -92008940 + MER81 DNA DNA 2 114 0 647 251 31 44 chr13 9864436 9864663 -92008506 - MER58A DNA MER1_type 0 224 1 2032 152 0 0 chr13 9864813 9865115 -92008054 - AluJb SINE Alu -10 302 1 1033 154 59 0 chr13 9865884 9866053 -92007116 + FRAM SINE Alu 1 173 -3 1703 166 13 23 chr13 9866053 9866355 -92006814 + AluJb SINE Alu 1 299 -13 7127 50 5 8 chr13 9867453 9868901 -92004268 + L1PA6 LINE L1 4674 6144 -10 716 160 0 73 chr13 9869193 9869343 -92003826 + FLAM_C SINE Alu 5 143 0 1805 164 30 52 chr13 9869719 9870050 -92003119 + MLT1B LTR MaLR 2 326 -64 2063 112 25 0 chr13 9870050 9870328 -92002841 + AluSx SINE Alu 1 285 -27 1805 164 30 52 chr13 9870328 9870362 -92002807 + MLT1B LTR MaLR 326 359 -31 1251 214 80 29 chr13 9870362 9870711 -92002458 - L1ME1 LINE L1 -56 6110 5744 1107 185 186 42 chr13 9870745 9871162 -92002007 + MER66B LTR ERV1 97 486 0 3100 210 49 34 chr13 9871162 9871338 -92001831 - L1ME1 LINE L1 -449 5717 5545 2123 120 0 26 chr13 9871338 9871646 -92001523 - AluSx SINE Alu -12 300 1 3100 210 49 34 chr13 9871646 9872536 -92000633 - L1ME1 LINE L1 -621 5545 4697 535 272 36 44 chr13 9872862 9873112 -92000057 - MIR SINE MIR 0 262 15 273 133 0 0 chr13 9873276 9873321 -91999848 - Alu SINE Alu -5 297 253 630 211 9 0 chr13 9873394 9873508 -91999661 - FRAM SINE Alu -61 115 1 333 355 52 0 chr13 9873610 9873782 -91999387 + L2 LINE L2 2271 2451 -863 365 222 214 0 chr13 9873796 9873922 -91999247 + MIR SINE MIR 39 191 -71 216 200 0 0 chr13 9873948 9873993 -91999176 + (TTA)n Simple_repeat Simple_repeat 2 46 0 230 194 75 15 chr13 9874121 9874188 -91998981 + Charlie7 DNA MER1_type 41 111 -2501 231 164 231 0 chr13 9874188 9874292 -91998877 + Charlie7 DNA MER1_type 2443 2570 -42 269 216 99 99 chr13 9874439 9874520 -91998649 - LTR67 LTR ERVL -4 553 473 1028 178 50 0 chr13 9874520 9874700 -91998469 - MER5A DNA MER1_type 0 189 1 269 216 99 99 chr13 9874700 9874799 -91998370 - LTR67 LTR ERVL -83 474 373 560 228 16 79 chr13 9875716 9875767 -91997402 + Tigger5 DNA MER2_type 44 97 -2226 2378 87 0 3 chr13 9875767 9876065 -91997104 + AluSc SINE Alu 1 297 -12 560 228 16 79 chr13 9876065 9876202 -91996967 + Tigger5 DNA MER2_type 97 220 -2103 * 2826 137 22 26 chr13 9876200 9876691 -91996478 + Tigger5 DNA MER2_type 1835 2323 0 1910 121 3 35 chr13 9876815 9877105 -91996064 + AluJo SINE Alu 1 281 -31 486 79 0 0 chr13 9877110 9877186 -91995983 + (GA)n Simple_repeat Simple_repeat 1 76 0 181 279 233 16 chr13 9877394 9877523 -91995646 + MIR SINE MIR 34 190 -72 21 0 0 0 chr13 9877729 9877750 -91995419 + AT_rich Low_complexity Low_complexity 1 21 0 207 222 197 34 chr13 9877752 9877869 -91995300 - L2 LINE L2 -17 3296 3161 2529 50 0 7 chr13 9878734 9879032 -91994137 - AluY SINE Alu -15 296 1 212 167 24 0 chr13 9880558 9880600 -91992569 + MIR SINE MIR 103 145 -117 1003 200 74 13 chr13 9880635 9880865 -91992304 - MIR SINE MIR 0 262 19 2084 130 3 3 chr13 9881949 9882257 -91990912 - AluSx SINE Alu -4 308 1 912 191 6 0 chr13 9882348 9882505 -91990664 - FRAM SINE Alu -19 157 1 232 370 96 18 chr13 9882515 9882902 -91990267 - L2 LINE L2 -609 2705 2289 2417 100 0 0 chr13 9883325 9883635 -91989534 - AluSx SINE Alu -2 310 1 2068 124 7 10 chr13 9884141 9884440 -91988729 - AluSx SINE Alu -14 298 1 234 0 0 0 chr13 9884913 9884939 -91988230 + (TA)n Simple_repeat Simple_repeat 2 27 0 2147 137 0 3 chr13 9885076 9885383 -91987786 + AluSx SINE Alu 1 306 -6 280 226 32 0 chr13 9885482 9885544 -91987625 - L3 LINE CR1 -91 1486 1423 540 270 100 50 chr13 9885676 9885917 -91987252 + MIR SINE MIR 10 262 0 201 255 20 0 chr13 9885915 9885966 -91987203 + L2 LINE L2 3176 3227 -86 * 1233 156 24 0 chr13 9886399 9886604 -91986565 + L1MA6 LINE L1 6087 6296 -4 24 0 0 0 chr13 9886604 9886628 -91986541 + AT_rich Low_complexity Low_complexity 1 24 0 299 271 35 12 chr13 9887351 9887436 -91985733 - MER63 DNA MER1_type -123 713 1 656 254 98 5 chr13 9888244 9888449 -91984720 + L1ME2 LINE L1 5940 6163 -1 256 304 62 9 chr13 9888454 9888566 -91984603 + MIR SINE MIR 51 168 -94 1412 157 124 15 chr13 9889221 9889495 -91983674 - AluJo SINE Alu -8 304 1 25 0 0 0 chr13 9890093 9890118 -91983051 + AT_rich Low_complexity Low_complexity 1 25 0 2273 117 3 0 chr13 9890176 9890484 -91982685 - AluSc SINE Alu 0 309 1 264 202 183 39 chr13 9891394 9891498 -91981671 - LTR67 LTR ERVL -7 550 432 420 327 75 53 chr13 9891854 9892215 -91980954 + L3 LINE CR1 1081 1449 -128 335 103 73 0 chr13 9892678 9892746 -91980423 + L1MA8 LINE L1 6219 6291 0 299 340 110 11 chr13 9892771 9892962 -91980207 - L3 LINE CR1 -17 1560 1351 813 280 76 20 chr13 9892966 9893323 -91979846 + L1MC4a LINE L1 5574 5950 -1858 297 209 0 0 chr13 9893421 9893488 -91979681 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1940 158 0 3 chr13 9893489 9893786 -91979383 - AluJb SINE Alu -16 296 1 308 328 55 0 chr13 9893886 9894014 -91979155 - L3 LINE CR1 -252 1325 1191 219 36 0 0 chr13 9894240 9894268 -91978901 + (GGCTG)n Simple_repeat Simple_repeat 5 32 0 1269 180 14 9 chr13 9894522 9894739 -91978430 + AluJo SINE Alu 1 218 -94 251 175 0 0 chr13 9894740 9894780 -91978389 + AluJo/FLAM SINE Alu 85 124 -178 1839 154 3 26 chr13 9894781 9895092 -91978077 - AluJb SINE Alu -8 304 1 866 153 73 0 chr13 9895105 9895242 -91977927 - AluJo/FRAM SINE Alu -30 282 136 319 230 40 0 chr13 9895245 9895319 -91977850 + AluJ/FRAM SINE Alu 226 302 0 1798 141 19 56 chr13 9897356 9897676 -91975493 - AluSx SINE Alu -4 308 1 357 248 137 72 chr13 9897688 9897950 -91975219 - HAL1 LINE L1 -2 2505 2227 446 215 8 99 chr13 9897986 9898173 -91974996 - MER104 DNA Tc2 0 182 14 1340 245 153 30 chr13 9898198 9899010 -91974159 - HAL1 LINE L1 -335 2172 579 1117 189 159 0 chr13 9899034 9899267 -91973902 + AluJo SINE Alu 5 274 -38 491 249 98 108 chr13 9899342 9899751 -91973418 - HAL1 LINE L1 -2002 505 101 1712 204 31 64 chr13 9899753 9899930 -91973239 + MER63B DNA MER1_type 1 182 -880 1741 167 101 12 chr13 9899930 9900210 -91972959 + MER47A DNA MER2_type 1 317 -2006 2209 141 0 3 chr13 9900210 9900523 -91972646 - AluSx SINE Alu 0 312 1 1741 167 101 12 chr13 9900523 9900578 -91972591 + MER47A DNA MER2_type 317 366 0 1712 204 31 64 chr13 9900578 9900693 -91972476 + MER63B DNA MER1_type 182 299 -763 2129 117 3 0 chr13 9900693 9900996 -91972173 - AluSx SINE Alu 0 304 1 1712 204 31 64 chr13 9900996 9901151 -91972018 + MER63B DNA MER1_type 299 436 0 1976 133 30 13 chr13 9901566 9901866 -91971303 - AluSx SINE Alu -7 305 1 2336 93 0 0 chr13 9902437 9902727 -91970442 + AluSx SINE Alu 1 290 -22 250 136 0 0 chr13 9902747 9902791 -91970378 - MADE1 DNA Mariner -36 44 1 504 280 86 35 chr13 9902935 9903167 -91970002 - MIR SINE MIR 0 262 19 2086 131 24 0 chr13 9903448 9903739 -91969430 + AluSx SINE Alu 1 298 -14 1093 136 0 6 chr13 9904001 9904163 -91969006 - FRAM SINE Alu -2 164 4 2374 143 27 48 chr13 9904670 9905111 -91968058 - MSTB1 LTR MaLR 0 432 1 1515 209 111 55 chr13 9905967 9906480 -91966689 + MLT1F LTR MaLR 1 542 0 849 256 92 50 chr13 9906993 9907410 -91965759 - L1ME4a LINE L1 -65 6056 5608 1979 122 3 11 chr13 9907410 9907730 -91965439 - AluSx SINE Alu 0 318 1 849 256 92 50 chr13 9907730 9907866 -91965303 - L1ME4a LINE L1 -513 5608 5479 1841 194 0 0 chr13 9907953 9908263 -91964906 + AluJb SINE Alu 1 310 -2 249 83 0 0 chr13 9908268 9908304 -91964865 + (GGAGA)n Simple_repeat Simple_repeat 4 39 0 339 277 106 83 chr13 9908638 9908977 -91964192 + L1ME4a LINE L1 5709 6055 -66 325 274 72 13 chr13 9909489 9909642 -91963527 + MIR SINE MIR 21 182 -80 1836 176 6 35 chr13 9911423 9911770 -91961399 + MER58B DNA MER1_type 2 338 -3 272 281 203 40 chr13 9912108 9912457 -91960712 - L2 LINE L2 -818 2496 2091 397 247 10 10 chr13 9912460 9912557 -91960612 + L2 LINE L2 3206 3302 -11 209 271 29 0 chr13 9912644 9912714 -91960455 + CT-rich Low_complexity Low_complexity 2 73 0 478 294 28 5 chr13 9913474 9913670 -91959499 - MIR SINE MIR -33 229 30 212 275 132 47 chr13 9913732 9913990 -91959179 + L2 LINE L2 2196 2475 -839 240 222 19 0 chr13 9914159 9914213 -91958956 - MER5B DNA MER1_type -3 175 121 421 166 237 43 chr13 9914722 9914861 -91958308 - MER103 DNA DNA 0 166 1 356 193 2 0 chr13 9914955 9915026 -91958143 - HsTC2 DNA Tc2 -1810 88 17 240 196 65 43 chr13 9915482 9915574 -91957595 - L1MC4 LINE L1 -1334 6708 6615 2265 104 13 3 chr13 9915574 9915881 -91957288 - AluSx SINE Alu -2 310 1 340 203 133 91 chr13 9916017 9916275 -91956894 - MLT1J LTR MaLR -71 538 234 1401 197 65 49 chr13 9917119 9917550 -91955619 + L1MC5 LINE L1 7189 7626 -335 807 224 23 66 chr13 9917659 9917962 -91955207 + L1MC5 LINE L1 7642 7931 -30 356 259 56 1 chr13 9918015 9918173 -91954996 + MER69A DNA AcHobo 1 177 0 735 179 8 22 chr13 9918231 9918365 -91954804 - FLAM_A SINE Alu -1 132 1 260 278 0 0 chr13 9918483 9918537 -91954632 + polypyrimidine Low_complexity Low_complexity 1 54 0 266 247 0 22 chr13 9918568 9918657 -91954512 - L1MC5 LINE L1 -271 7690 7604 1649 164 35 60 chr13 9919188 9919585 -91953584 - MLT1B LTR MaLR 0 390 4 1740 213 35 72 chr13 9920817 9920999 -91952170 - LTR40a LTR ERVL 0 519 332 2875 10 0 0 chr13 9920999 9921307 -91951862 + AluYa5 SINE Alu 1 308 -3 1740 213 35 72 chr13 9921307 9921618 -91951551 - LTR40a LTR ERVL -187 332 45 1908 142 0 44 chr13 9921618 9921936 -91951233 + AluSx SINE Alu 1 304 -8 1740 213 35 72 chr13 9921936 9921980 -91951189 - LTR40a LTR ERVL -474 45 1 289 241 0 0 chr13 9922455 9922509 -91950660 - MIR3 SINE MIR -23 185 132 1395 167 13 0 chr13 9922560 9922794 -91950375 + L1ME2 LINE L1 5550 5786 -378 399 78 39 0 chr13 9922797 9922874 -91950295 + (TA)n Simple_repeat Simple_repeat 1 80 0 499 258 88 32 chr13 9922895 9923112 -91950057 + L1ME2 LINE L1 5789 6017 -147 243 91 0 0 chr13 9923116 9923149 -91950020 + MER3 DNA MER1_type 17 49 -160 376 267 43 0 chr13 9923244 9923360 -91949809 + MER103 DNA DNA 36 156 -10 2183 92 17 10 chr13 9923874 9924169 -91949000 - AluY SINE Alu -14 297 1 642 239 32 21 chr13 9924948 9925136 -91948033 - L1ME1 LINE L1 -104 6062 5873 1489 223 67 61 chr13 9925145 9926064 -91947105 - L1MDb LINE L1 -4524 1882 789 279 296 0 23 chr13 9926671 9926759 -91946410 - L1MDb LINE L1 -5935 461 376 217 284 52 52 chr13 9927962 9928078 -91945091 - L2 LINE L2 -4 3268 3153 265 343 33 33 chr13 9928127 9928337 -91944832 + L2 LINE L2 2431 2640 -674 223 362 110 8 chr13 9928708 9928835 -91944334 - L2 LINE L2 0 3272 3133 222 305 78 21 chr13 9928910 9929051 -91944118 - L2 LINE L2 -180 3092 2944 197 215 25 51 chr13 9929165 9929244 -91943925 + L3 LINE CR1 1458 1534 -43 2328 99 0 3 chr13 9929310 9929613 -91943556 + AluSx SINE Alu 1 302 -10 388 197 114 68 chr13 9930035 9930167 -91943002 - MER5A DNA MER1_type -49 140 3 182 211 0 26 chr13 9930246 9930284 -91942885 - L3 LINE CR1 -20 1557 1521 183 300 38 50 chr13 9931526 9931606 -91941563 + L2 LINE L2 3110 3188 -84 596 304 60 0 chr13 9931803 9932020 -91941149 - MIR SINE MIR 0 262 33 32 26 0 0 chr13 9933039 9933078 -91940091 + AT_rich Low_complexity Low_complexity 1 39 0 690 217 29 11 chr13 9933650 9933825 -91939344 - MER5B DNA MER1_type 0 178 1 196 213 26 174 chr13 9934039 9934143 -91939026 - MIR SINE MIR -29 233 158 2355 85 0 7 chr13 9934143 9934438 -91938731 - AluSc SINE Alu -16 293 1 196 213 26 174 chr13 9934438 9934488 -91938681 - MIR SINE MIR -104 158 102 1758 126 52 15 chr13 9934490 9934761 -91938408 + AluJo SINE Alu 1 281 -31 283 337 12 12 chr13 9934779 9934865 -91938304 - MIR SINE MIR -93 115 30 519 253 39 19 chr13 9934892 9935046 -91938123 + MIR SINE MIR 53 209 -53 2575 58 0 3 chr13 9935658 9935968 -91937201 + AluY SINE Alu 1 309 -2 550 293 67 54 chr13 9936232 9936618 -91936551 - L2 LINE L2 0 3272 2882 1449 146 34 15 chr13 9936738 9937005 -91936164 + MLT1E LTR MaLR 318 589 -4 357 313 141 15 chr13 9937121 9937575 -91935594 + L1MC4a LINE L1 5446 5574 -592 584 218 51 20 chr13 9939623 9939820 -91933349 - LTR33A LTR ERVL -2 521 319 660 246 221 28 chr13 9939830 9940220 -91932949 - LTR50 LTR ERVL -330 465 1 2265 125 34 0 chr13 9942178 9942530 -91930639 - THE1B LTR MaLR 0 364 1 292 244 81 12 chr13 9943310 9943396 -91929773 + MIR3 SINE MIR 111 202 -6 588 243 113 0 chr13 9943428 9943613 -91929556 - L1ME3 LINE L1 -8 6154 5949 373 317 118 14 chr13 9943613 9943834 -91929335 - MIR SINE MIR -3 259 16 225 0 0 0 chr13 9944477 9944502 -91928667 + (CGG)n Simple_repeat Simple_repeat 1 25 0 23 54 0 0 chr13 9945607 9945644 -91927525 + AT_rich Low_complexity Low_complexity 1 37 0 293 255 122 10 chr13 9946023 9946121 -91927048 - L2 LINE L2 0 3313 3205 459 270 163 19 chr13 9946193 9946408 -91926761 - MIR SINE MIR -4 258 13 271 363 38 47 chr13 9946422 9946634 -91926535 - L2 LINE L2 -191 3081 2872 747 326 103 44 chr13 9946660 9947313 -91925856 - L2 LINE L2 -493 2821 2131 2267 110 0 0 chr13 9947332 9947631 -91925538 + AluSc SINE Alu 1 299 -10 982 172 12 0 chr13 9948317 9948480 -91924689 - FRAM SINE Alu -12 164 1 181 231 96 19 chr13 9948728 9948780 -91924389 + L3 LINE CR1 1513 1568 -9 1740 172 0 10 chr13 9949728 9950024 -91923145 + AluJb SINE Alu 3 295 -17 520 282 120 37 chr13 9950225 9950466 -91922703 + MIR SINE MIR 2 262 0 2188 99 7 7 chr13 9950512 9950815 -91922354 - AluSq SINE Alu -10 303 1 337 288 80 0 chr13 9952542 9952667 -91920502 - MIR SINE MIR -72 190 56 374 287 76 36 chr13 9952668 9952891 -91920278 - L1MEc LINE L1 -906 1584 1359 692 240 128 34 chr13 9952930 9953314 -91919855 - L1MEc LINE L1 -4883 1236 817 780 202 71 0 chr13 9953489 9953672 -91919497 + L1ME1 LINE L1 5751 5946 -220 1949 118 29 52 chr13 9953673 9953872 -91919297 - Tigger1 DNA MER2_type 0 2418 2229 4290 115 45 0 chr13 9953872 9954515 -91918654 - L1PA16 LINE L1 -7 6159 5488 1949 118 29 52 chr13 9954515 9954664 -91918505 - Tigger1 DNA MER2_type -189 2229 2078 223 177 32 0 chr13 9954666 9954728 -91918441 + CT-rich Low_complexity Low_complexity 3 66 0 970 144 0 50 chr13 9954730 9954890 -91918279 - FRAM SINE Alu -2 174 23 823 165 0 0 chr13 9955846 9955979 -91917190 - FLAM_C SINE Alu 0 133 1 1767 102 30 16 chr13 9955982 9956286 -91916883 - Tigger1 DNA MER2_type -330 2088 1781 841 163 0 0 chr13 9956286 9956415 -91916754 - FLAM_C SINE Alu -10 133 5 10833 126 25 1 chr13 9956419 9958170 -91914999 - Tigger1 DNA MER2_type -625 1793 1 703 196 11 34 chr13 9958199 9958378 -91914791 + L1ME1 LINE L1 5987 6161 -5 584 186 138 38 chr13 9958386 9958596 -91914573 + L1ME3 LINE L1 5931 6161 -1 1619 242 117 31 chr13 9958600 9959277 -91913892 + HAL1 LINE L1 1095 1829 -678 900 237 57 16 chr13 9959279 9959524 -91913645 + LTR40a LTR ERVL 108 362 -157 3720 209 48 84 chr13 9959543 9959852 -91913317 - L1M4 LINE L1 -1094 5052 4733 2160 115 3 0 chr13 9959852 9960147 -91913022 - AluSp SINE Alu -17 296 1 3720 209 48 84 chr13 9960147 9961318 -91911851 - L1M4 LINE L1 -1413 4733 3626 643 234 30 24 chr13 9961480 9961775 -91911394 - L1M4 LINE L1 -2789 3357 3061 11249 171 64 7 chr13 9961780 9964069 -91909100 + Cheshire DNA MER1_type 1 2420 0 1896 113 85 25 chr13 9964339 9964693 -91908476 - THE1C LTR MaLR 0 375 1 9848 112 35 36 chr13 9964695 9966275 -91906894 - THE1C-int LTR MaLR -2 1578 1 1765 135 76 22 chr13 9966275 9966631 -91906538 - THE1C LTR MaLR 0 375 1 1921 142 57 0 chr13 9967741 9968023 -91905146 + AluSx SINE Alu 1 298 -14 2382 104 3 0 chr13 9968605 9968913 -91904256 - AluSg SINE Alu -1 309 1 2586 58 0 3 chr13 9968916 9969228 -91903941 - AluY SINE Alu 0 311 1 1901 178 0 9 chr13 9969230 9969545 -91903624 - AluJo SINE Alu 0 312 1 23 54 0 0 chr13 9969839 9969876 -91903293 + AT_rich Low_complexity Low_complexity 1 37 0 528 209 19 0 chr13 9970031 9970136 -91903033 - U6 snRNA snRNA 0 107 1 968 148 65 0 chr13 9970748 9970903 -91902266 - FRAM SINE Alu 0 40 1 218 310 69 103 chr13 9972572 9972688 -91900481 + L2 LINE L2 3160 3271 -1 2816 13 0 0 chr13 9973889 9974199 -91898970 - AluYa5 SINE Alu -1 310 1 487 270 72 2 chr13 9974424 9974576 -91898593 + MIR SINE MIR 10 174 -62 459 254 48 38 chr13 9974864 9975124 -91898045 - MIR SINE MIR -34 228 3 189 74 0 0 chr13 9975357 9975384 -91897785 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr13 9975680 9975701 -91897468 + AT_rich Low_complexity Low_complexity 1 21 0 2027 137 37 8 chr13 9976032 9976413 -91896756 - L1MA9 LINE L1 -5 6307 5916 2267 162 32 5 chr13 9976413 9976815 -91896354 + MSTB LTR MaLR 1 413 -13 385 171 267 0 chr13 9976849 9976954 -91896215 - L1MA9 LINE L1 -391 5921 5789 414 134 0 0 chr13 9976954 9977021 -91896148 + (TG)n Simple_repeat Simple_repeat 1 67 0 1241 120 42 25 chr13 9977040 9977281 -91895888 - L1MA9 LINE L1 -524 5788 5544 242 314 118 0 chr13 9977705 9977807 -91895362 + MIR SINE MIR 30 143 -65 205 306 102 20 chr13 9977845 9977943 -91895226 - L2 LINE L2 -25 3288 3183 500 245 57 25 chr13 9978320 9978479 -91894690 - MIR SINE MIR -2 260 97 * 1529 262 112 9 chr13 9978475 9979037 -91894132 - L2 LINE L2 -1336 1978 1359 2466 88 0 0 chr13 9979478 9979785 -91893384 - AluSg SINE Alu -3 307 1 210 143 0 0 chr13 9980002 9980037 -91893132 + (T)n Simple_repeat Simple_repeat 1 35 0 2238 111 91 38 chr13 9980199 9980597 -91892572 + MSTA LTR MaLR 1 419 -9 623 265 71 10 chr13 9980597 9980793 -91892376 + MIR SINE MIR 52 259 -3 * 998 238 44 102 chr13 9980773 9980976 -91892193 + L2 LINE L2 2927 3095 -218 8453 21 14 276 chr13 9980976 9982849 -91890320 - SVA Other Other -2 1384 3 998 238 44 102 chr13 9982849 9983056 -91890113 + L2 LINE L2 3095 3313 0 320 282 184 29 chr13 9983205 9983411 -91889758 - L1MDa LINE L1 -4591 1949 1712 1138 276 127 34 chr13 9983511 9984250 -91888919 - L1MDa LINE L1 -5281 1249 442 26 88 0 0 chr13 9985389 9985457 -91887712 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr13 9985487 9985509 -91887660 + AT_rich Low_complexity Low_complexity 1 22 0 1787 120 50 0 chr13 9985591 9985850 -91887319 + AluSx SINE Alu 1 272 -40 2293 110 0 3 chr13 9985856 9986164 -91887005 - AluSp SINE Alu -6 307 1 207 125 0 0 chr13 9986466 9986506 -91886663 + (T)n Simple_repeat Simple_repeat 1 40 0 40552 34 23 2 chr13 9986509 9992533 -91880636 - L1PA3 LINE L1 -4 6151 1 2042 151 0 0 chr13 9992536 9992834 -91880335 - AluSx SINE Alu -14 298 1 846 222 40 79 chr13 9993042 9993376 -91879793 + L1M4 LINE L1 4865 5180 -966 381 121 45 0 chr13 9993376 9993442 -91879727 + L1PA11 LINE L1 6103 6171 -3 846 222 40 79 chr13 9993442 9993535 -91879634 + L1M4 LINE L1 5180 5275 -871 189 107 0 0 chr13 9995173 9995201 -91877968 + (T)n Simple_repeat Simple_repeat 1 28 0 201 154 0 0 chr13 9996230 9996269 -91876900 + T-rich Low_complexity Low_complexity 2 40 0 432 263 132 0 chr13 9997835 9997987 -91875182 - MIR SINE MIR -14 248 77 1669 86 9 9 chr13 9998207 9998427 -91874742 - AluY SINE Alu -11 300 81 2224 113 0 13 chr13 9998842 9999152 -91874017 + AluSx SINE Alu 1 306 -6 226 279 73 30 chr13 9999249 9999414 -91873755 - MER112 DNA MER1_type -88 172 1 186 266 0 78 chr13 9999432 9999496 -91873673 - MIR SINE MIR -62 146 88 366 330 144 9 chr13 9999601 9999816 -91873353 - MIR SINE MIR -15 247 4 238 351 53 0 chr13 10000057 10000151 -91873018 - L2 LINE L2 -5 3308 3210 1727 198 34 3 chr13 10000197 10000551 -91872618 - MLT1A1 LTR MaLR 0 365 1 2468 59 0 7 chr13 10000730 10001034 -91872135 - AluY SINE Alu -9 302 1 2313 208 94 3 chr13 10001479 10002062 -91871107 + MER63 DNA MER1_type 425 1060 0 1850 225 92 26 chr13 10002083 10002645 -91870524 - L1ME3A LINE L1 -95 6075 5485 2124 101 0 39 chr13 10002645 10002817 -91870352 - AluSq SINE Alu -17 296 140 2399 71 0 0 chr13 10002817 10003114 -91870055 - AluY SINE Alu -14 297 1 2124 101 0 39 chr13 10003114 10003248 -91869921 - AluSq SINE Alu -173 140 2 1850 225 92 26 chr13 10003248 10003417 -91869752 - L1ME3A LINE L1 -685 5485 5329 867 262 86 11 chr13 10004058 10004325 -91868844 + L2 LINE L2 2675 2961 -353 599 206 90 13 chr13 10004318 10004473 -91868696 + L2 LINE L2 3142 3308 -5 * 941 236 94 9 chr13 10004719 10004952 -91868217 + MIR SINE MIR 10 262 0 14778 79 15 6 chr13 10005018 10007309 -91865860 - L1PA7 LINE L1 -697 5475 3170 5296 46 8 3 chr13 10007309 10007963 -91865206 + L1PA7 LINE L1 5497 6154 0 543 333 179 6 chr13 10008137 10008455 -91864714 - L3 LINE CR1 -124 1453 1081 218 322 92 11 chr13 10008510 10008597 -91864572 + MIR SINE MIR 39 132 -76 184 377 9 9 chr13 10009085 10009191 -91863978 + MIR SINE MIR 46 151 -57 376 324 69 6 chr13 10009318 10009491 -91863678 + L2 LINE L2 3119 3302 -11 22 0 0 0 chr13 10010678 10010700 -91862469 + AT_rich Low_complexity Low_complexity 1 22 0 2273 108 0 0 chr13 10011896 10012193 -91860976 + AluSc SINE Alu 1 297 -12 2003 155 0 0 chr13 10012453 10012750 -91860419 - AluSx SINE Alu -15 297 1 335 260 52 10 chr13 10012832 10012928 -91860241 - MIR3 SINE MIR -9 199 100 807 233 73 5 chr13 10013430 10013636 -91859533 + MIR SINE MIR 2 221 -41 225 327 140 37 chr13 10014645 10014752 -91858417 - L2 LINE L2 -12 3260 3143 554 343 70 44 chr13 10014858 10015480 -91857689 - L2 LINE L2 -190 3082 2438 858 242 51 142 chr13 10015490 10015699 -91857470 - MER21B LTR ERV1 -157 706 480 1639 212 66 7 chr13 10015699 10016109 -91857060 + Tigger2a DNA MER2_type 1 434 0 858 242 51 142 chr13 10016109 10016320 -91856849 - MER21B LTR ERV1 -383 480 412 2041 154 68 39 chr13 10016320 10016735 -91856434 + MSTB1 LTR MaLR 4 430 -2 858 242 51 142 chr13 10016735 10017092 -91856077 - MER21B LTR ERV1 -451 412 24 4219 158 36 20 chr13 10017676 10019031 -91854138 - L1MA4 LINE L1 -7 6298 4888 270 252 171 0 chr13 10019031 10019154 -91854015 - L2 LINE L2 -1594 1720 1577 25 0 0 0 chr13 10020344 10020369 -91852800 + AT_rich Low_complexity Low_complexity 1 25 0 317 234 13 0 chr13 10021010 10021087 -91852082 - L1MC5 LINE L1 -44 7917 7840 205 349 94 9 chr13 10021542 10021648 -91851521 - L2 LINE L2 -1 3312 3198 1833 150 65 106 chr13 10021663 10022144 -91851025 + Charlie1b DNA MER1_type 7 465 -2296 1805 177 7 7 chr13 10022144 10022438 -91850731 - AluJb SINE Alu -18 294 1 1833 150 65 106 chr13 10022438 10022495 -91850674 + Charlie1b DNA MER1_type 465 523 0 1715 205 0 0 chr13 10022823 10023126 -91850043 + AluJo SINE Alu 1 303 -9 323 219 0 41 chr13 10023474 10023547 -91849622 + AluSg/x SINE Alu 217 286 -14 189 107 0 0 chr13 10024098 10024126 -91849043 + (A)n Simple_repeat Simple_repeat 1 28 0 1892 175 3 0 chr13 10024786 10025083 -91848086 - AluSx SINE Alu -14 298 1 2796 206 133 9 chr13 10025150 10026191 -91846978 - L1ME2 LINE L1 -10 6223 5002 297 0 0 0 chr13 10026191 10026224 -91846945 + (TG)n Simple_repeat Simple_repeat 2 34 0 2796 206 133 9 chr13 10026224 10026376 -91846793 - L1ME2 LINE L1 -1231 5002 4870 1094 257 149 55 chr13 10026487 10027036 -91846133 - MLT2F LTR ERVL -58 605 5 2486 237 63 49 chr13 10027040 10027322 -91845847 - L1ME2 LINE L1 -2802 3413 3136 1590 173 52 28 chr13 10027322 10027611 -91845558 - AluJo SINE Alu -16 296 1 2486 237 63 49 chr13 10027611 10028404 -91844765 - L1ME2 LINE L1 -3079 3136 2356 2382 58 0 10 chr13 10028404 10028696 -91844473 - AluY SINE Alu -5 306 18 2486 237 63 49 chr13 10028696 10028758 -91844411 - L1ME2 LINE L1 -3859 2356 2296 2089 129 0 7 chr13 10028758 10029060 -91844109 - AluSx SINE Alu -12 300 1 2486 237 63 49 chr13 10029060 10029297 -91843872 - L1ME2 LINE L1 -3919 2296 2042 544 273 16 38 chr13 10029318 10029374 -91843795 + MLT1F LTR MaLR 356 412 -130 1575 187 38 106 chr13 10029374 10029795 -91843374 - MLT2C2 LTR ERVL 0 464 81 2076 146 3 0 chr13 10029795 10030096 -91843073 - AluSp SINE Alu -6 307 6 1575 187 38 106 chr13 10030096 10030172 -91842997 - MLT2C2 LTR ERVL -383 81 1 544 273 16 38 chr13 10030172 10030298 -91842871 + MLT1F LTR MaLR 412 534 -8 337 310 78 31 chr13 10030312 10030441 -91842728 - L1ME2 LINE L1 -5472 924 790 289 276 31 16 chr13 10030527 10030654 -91842515 - L1ME2 LINE L1 -6233 163 35 2087 139 3 3 chr13 10030873 10031182 -91841987 + AluSx SINE Alu 2 310 -2 2156 135 0 0 chr13 10031389 10031692 -91841477 - AluSx SINE Alu -9 303 1 198 260 27 41 chr13 10032231 10032304 -91840865 - L2 LINE L2 0 3272 3201 212 333 0 32 chr13 10032425 10032518 -91840651 - L2 LINE L2 -188 3084 2995 22 56 0 0 chr13 10032679 10032715 -91840454 + AT_rich Low_complexity Low_complexity 1 36 0 668 252 100 21 chr13 10032910 10033398 -91839771 - MLT1G1 LTR MaLR -5 590 5 225 0 0 0 chr13 10033642 10033667 -91839502 + (TA)n Simple_repeat Simple_repeat 2 26 0 473 215 185 8 chr13 10034033 10034163 -91839006 - MIR SINE MIR -10 252 100 2279 75 0 7 chr13 10034410 10034702 -91838467 - AluY SINE Alu -21 290 1 451 203 42 2 chr13 10035683 10035796 -91837373 - L1ME3A LINE L1 -221 5949 5832 2115 148 33 41 chr13 10035855 10035937 -91837232 - MLT1B LTR MaLR -2 388 307 18408 27 1 1 chr13 10035937 10038763 -91834406 - L1PA3 LINE L1 -3 6152 3326 2115 148 33 41 chr13 10038763 10039071 -91834098 - MLT1B LTR MaLR -83 307 1 570 230 102 40 chr13 10039071 10039297 -91833872 - L1ME3A LINE L1 -372 5798 5559 1008 158 32 5 chr13 10039311 10039501 -91833668 - MER52A LTR ERV1 -51 1704 1510 1739 293 42 15 chr13 10039501 10040244 -91832925 - L1ME3A LINE L1 -831 5315 4553 601 214 173 88 chr13 10040234 10040678 -91832491 + L1MC4 LINE L1 7560 8041 -1 * 180 0 0 0 chr13 10041202 10041222 -91831947 + (T)n Simple_repeat Simple_repeat 1 20 0 2489 55 0 3 chr13 10041800 10042093 -91831076 + AluY SINE Alu 10 301 -10 914 127 35 14 chr13 10044111 10044253 -91828916 - AluSg/x SINE Alu -32 280 136 755 141 39 0 chr13 10045769 10045897 -91827272 + L1P3 LINE L1 5343 5475 -679 926 236 94 9 chr13 10045963 10046196 -91826973 - MIR SINE MIR 0 262 10 594 206 90 13 chr13 10046442 10046597 -91826572 - L2 LINE L2 -5 3308 3142 * 849 255 90 15 chr13 10046590 10046857 -91826312 - L2 LINE L2 -353 2961 2675 352 172 111 153 chr13 10047496 10047667 -91825502 + L1MC/D LINE L1 5327 5490 -849 2419 92 0 0 chr13 10047667 10047973 -91825196 + AluSg SINE Alu 2 307 -3 959 87 13 40 chr13 10048434 10048583 -91824586 + MSTB1 LTR MaLR 286 430 -2 523 240 37 157 chr13 10048618 10048940 -91824229 - MER21B LTR ERV1 -409 196 24 3108 173 55 11 chr13 10049535 10050282 -91822887 - L1MA4 LINE L1 -15 6290 5488 213 243 54 27 chr13 10050617 10050630 -91822539 - MIR SINE MIR -66 196 185 2238 100 0 3 chr13 10050630 10050920 -91822249 - AluSx SINE Alu -19 293 5 213 243 54 27 chr13 10050920 10050980 -91822189 - MIR SINE MIR -77 185 121 2168 96 14 7 chr13 10051410 10051726 -91821443 - AluSx SINE Alu 0 318 1 198 0 0 0 chr13 10051743 10051765 -91821404 + (CA)n Simple_repeat Simple_repeat 2 23 0 222 91 0 0 chr13 10051824 10051857 -91821312 + (CA)n Simple_repeat Simple_repeat 2 34 0 351 0 0 0 chr13 10051901 10051940 -91821229 + (CA)n Simple_repeat Simple_repeat 2 40 0 278 105 0 0 chr13 10051980 10052018 -91821151 - Alu SINE Alu -264 38 1 282 73 0 0 chr13 10052036 10052077 -91821092 + (CA)n Simple_repeat Simple_repeat 1 41 0 183 80 0 0 chr13 10052133 10052158 -91821011 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 5130 150 36 6 chr13 10055399 10056251 -91816918 - L1MC2 LINE L1 -11 6333 5456 367 156 143 0 chr13 10056295 10056372 -91816797 - L1MC2 LINE L1 -871 5462 5375 442 314 58 5 chr13 10057907 10058095 -91815074 - MIR SINE MIR -58 204 7 29 60 0 0 chr13 10060195 10060245 -91812924 + AT_rich Low_complexity Low_complexity 1 50 0 1494 230 156 8 chr13 10060601 10061122 -91812047 - Charlie7 DNA MER1_type -257 2355 1758 421 281 62 14 chr13 10061201 10061347 -91811822 + MER112 DNA MER1_type 91 243 -17 716 270 21 5 chr13 10062329 10062518 -91810651 + MIR SINE MIR 32 223 -39 417 199 92 75 chr13 10062541 10062745 -91810424 - MER63 DNA MER1_type 0 1688 3 199 340 0 0 chr13 10063836 10063889 -91809280 - L2 LINE L2 -86 3227 3175 216 0 0 0 chr13 10064212 10064236 -91808933 + (A)n Simple_repeat Simple_repeat 1 24 0 1930 118 33 0 chr13 10064463 10064775 -91808394 - AluSx SINE Alu 0 321 1 653 267 76 57 chr13 10066044 10066359 -91806810 - MLT1I LTR MaLR -18 391 71 2307 119 0 0 chr13 10066653 10066965 -91806204 - AluSx SINE Alu 0 312 1 206 204 114 0 chr13 10066985 10067029 -91806140 - MIR SINE MIR -79 129 81 263 206 32 16 chr13 10067380 10067443 -91805726 - MER5B DNA MER1_type -1 177 114 2139 102 0 20 chr13 10067443 10067737 -91805432 + AluY SINE Alu 1 288 -23 2563 44 0 3 chr13 10067738 10068035 -91805134 + AluY SINE Alu 1 296 -15 188 306 35 35 chr13 10068100 10068185 -91804984 - MER5B DNA MER1_type -93 85 1 831 317 149 10 chr13 10068951 10069361 -91803808 + L3 LINE CR1 443 909 -668 401 252 19 19 chr13 10069704 10069807 -91803362 + L2 LINE L2 3211 3313 0 180 0 0 0 chr13 10070602 10070622 -91802547 + (CA)n Simple_repeat Simple_repeat 1 20 0 957 306 43 31 chr13 10071788 10072170 -91800999 + L1MDa LINE L1 17 406 -6134 2558 111 11 32 chr13 10072170 10072541 -91800628 + THE1B LTR MaLR 2 364 0 957 306 43 31 chr13 10072541 10072579 -91800590 + L1MDa LINE L1 406 442 -6098 2977 213 68 11 chr13 10073002 10073752 -91799417 + L1MDa LINE L1 1607 2399 -4141 1177 201 5 0 chr13 10073754 10073953 -91799216 + Tigger3(Golem) DNA MER2_type 2 201 -2828 * 3504 126 37 66 chr13 10073946 10074642 -91798527 + Tigger3(Golem) DNA MER2_type 2354 3029 0 1050 200 72 7 chr13 10074642 10075039 -91798130 + L1MDa LINE L1 2398 2828 -3712 2191 104 3 0 chr13 10076123 10076421 -91796748 - AluY SINE Alu -12 299 1 895 264 17 17 chr13 10076920 10077159 -91796010 + MIR SINE MIR 1 239 -23 296 356 39 86 chr13 10078838 10079245 -91793924 - L2 LINE L2 -4 3268 2881 22 0 0 0 chr13 10080903 10080925 -91792244 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr13 10082073 10082101 -91791068 + (CA)n Simple_repeat Simple_repeat 2 29 0 341 304 69 19 chr13 10082278 10082451 -91790718 - MIR SINE MIR -16 246 70 2308 107 3 19 chr13 10082549 10082866 -91790303 - AluSp SINE Alu -1 312 1 2758 133 95 52 chr13 10082866 10083283 -91789886 + LTR36 LTR ERV1 9 459 -152 2072 114 0 0 chr13 10083283 10083556 -91789613 - AluSx SINE Alu -39 273 1 2758 133 95 52 chr13 10083556 10083716 -91789453 + LTR36 LTR ERV1 459 611 0 263 245 31 41 chr13 10085562 10085660 -91787509 + MIR SINE MIR 9 105 -157 225 325 81 30 chr13 10086728 10086925 -91786244 - L2 LINE L2 -180 3092 2886 1969 228 64 10 chr13 10087054 10087725 -91785444 - L1M4 LINE L1 -2518 4126 3420 349 239 0 0 chr13 10087729 10087800 -91785369 - MLT2B2 LTR ERVL -65 450 380 3807 223 16 59 chr13 10087800 10088817 -91784352 - L1M4 LINE L1 -5536 1006 34 271 253 80 53 chr13 10088869 10089019 -91784150 - L2 LINE L2 -597 2717 2564 297 287 119 28 chr13 10089097 10089240 -91783929 - MIR SINE MIR -104 158 3 1674 235 152 30 chr13 10089274 10089368 -91783801 - L2 LINE L2 -2 3311 3230 2284 125 3 0 chr13 10089368 10089679 -91783490 + AluSx SINE Alu 1 312 0 1674 235 152 30 chr13 10089679 10089832 -91783337 - L2 LINE L2 -83 3230 3097 2151 118 48 22 chr13 10089832 10090187 -91782982 - THE1B LTR MaLR 0 364 1 1674 235 152 30 chr13 10090187 10090952 -91782217 - L2 LINE L2 -216 3097 2187 448 271 77 7 chr13 10092228 10092383 -91780786 - MIR SINE MIR -15 247 82 275 264 57 28 chr13 10093034 10093140 -91780029 - Charlie7 DNA MER1_type -2503 109 1 254 289 88 35 chr13 10093476 10093590 -91779579 + L2 LINE L2 3143 3262 -10 246 171 0 0 chr13 10094085 10094126 -91779043 - L2 LINE L2 -17 3296 3256 219 257 0 68 chr13 10094152 10094226 -91778943 - MIR SINE MIR -158 104 36 2597 127 17 2 chr13 10094521 10094938 -91778231 + MSTB LTR MaLR 1 423 -3 2086 133 7 10 chr13 10095415 10095717 -91777452 - AluSx SINE Alu -9 303 3 2313 107 0 3 chr13 10096021 10096320 -91776849 - AluSx SINE Alu -14 298 1 187 171 98 0 chr13 10096334 10096375 -91776794 - MIR SINE MIR -97 165 121 1222 122 145 37 chr13 10096518 10096732 -91776437 + AluSx SINE Alu 64 300 -12 283 247 63 2 chr13 10096753 10096828 -91776341 - MIR SINE MIR -118 90 11 384 22 0 0 chr13 10097406 10097451 -91775718 + (TG)n Simple_repeat Simple_repeat 1 45 0 2394 90 0 0 chr13 10097590 10097880 -91775289 - AluSx SINE Alu -21 291 2 333 340 104 0 chr13 10098421 10098565 -91774604 + MIR3 SINE MIR 3 161 -47 1804 170 38 9 chr13 10099133 10099474 -91773695 + MLT1A1 LTR MaLR 3 353 -12 23 68 0 0 chr13 10101073 10101117 -91772052 + AT_rich Low_complexity Low_complexity 1 44 0 549 232 44 33 chr13 10102717 10102898 -91770271 + MIR SINE MIR 1 183 -79 318 287 67 22 chr13 10103017 10103285 -91769884 - L2 LINE L2 -631 2683 2404 252 174 0 0 chr13 10103293 10103339 -91769830 - MIR SINE MIR -105 103 58 2001 236 38 22 chr13 10105398 10105931 -91767238 + MLT1F LTR MaLR 2 542 0 769 278 0 54 chr13 10105961 10106202 -91766967 - MIR SINE MIR -21 241 14 279 327 64 30 chr13 10106625 10106827 -91766342 - L2 LINE L2 -6 3307 3099 374 225 113 0 chr13 10106901 10106981 -91766188 + MER81 DNA DNA 1 89 -25 900 189 11 42 chr13 10107052 10107242 -91765927 + MER20B DNA MER1_type 10 193 -26 362 259 0 0 chr13 10108400 10108485 -91764684 + L2 LINE L2 3228 3312 -1 549 309 27 18 chr13 10109313 10109533 -91763636 - MIR SINE MIR -29 233 12 1851 188 36 35 chr13 10109580 10110034 -91763135 - MLT1C LTR MaLR -7 619 1 756 199 12 12 chr13 10110640 10110801 -91762368 + MER5B DNA MER1_type 18 178 0 1585 158 3 99 chr13 10111079 10111401 -91761768 - AluJo SINE Alu -21 291 1 1116 249 89 3 chr13 10112114 10112588 -91760581 - MER20B DNA MER1_type -116 667 118 202 139 28 0 chr13 10112730 10112766 -91760403 + CT-rich Low_complexity Low_complexity 3 39 0 312 325 98 8 chr13 10113111 10113234 -91759935 - MER5A DNA MER1_type -1 188 55 1279 229 82 56 chr13 10113444 10113906 -91759263 + MLT1J LTR MaLR 30 503 -8 2017 156 0 10 chr13 10115332 10115634 -91757535 + AluJo SINE Alu 1 299 -13 419 282 8 8 chr13 10116205 10116322 -91756847 + MIR3 SINE MIR 91 207 -1 190 281 148 23 chr13 10116365 10116493 -91756676 - L2 LINE L2 -43 3229 3086 400 340 59 57 chr13 10116702 10116760 -91756409 - L2 LINE L2 -589 2725 2669 2722 51 0 0 chr13 10116760 10117071 -91756098 - AluY SINE Alu 0 311 1 400 340 59 57 chr13 10117071 10117619 -91755550 - L2 LINE L2 -645 2669 2115 613 184 0 0 chr13 10117619 10117744 -91755425 + L1MA4A LINE L1 6176 6300 -3 400 340 59 57 chr13 10117744 10117785 -91755384 - L2 LINE L2 -1199 2115 2076 3871 56 15 0 chr13 10118037 10118556 -91754613 - L1PA8 LINE L1 0 6172 5646 2704 64 0 0 chr13 10118557 10118978 -91754191 + L1P3 LINE L1 5186 5606 -566 396 221 88 0 chr13 10119328 10119441 -91753728 - L1MC4 LINE L1 -2 8040 7918 1085 287 89 11 chr13 10119484 10119762 -91753407 - L1MC4 LINE L1 -468 7340 7085 1778 81 0 0 chr13 10119762 10119973 -91753196 - AluSg/x SINE Alu -14 296 86 1085 287 89 11 chr13 10119973 10120314 -91752855 - L1MC4 LINE L1 -723 7085 6634 429 269 0 0 chr13 10120357 10120465 -91752704 - MIR SINE MIR -36 226 119 266 276 157 10 chr13 10120591 10120735 -91752434 - MIR SINE MIR -61 147 16 512 306 6 28 chr13 10121108 10121288 -91751881 + MIR SINE MIR 16 191 -71 23 33 0 0 chr13 10121479 10121509 -91751660 + AT_rich Low_complexity Low_complexity 1 30 0 201 345 12 0 chr13 10121567 10121651 -91751518 + G-rich Low_complexity Low_complexity 6 90 0 405 278 114 18 chr13 10121700 10121927 -91751242 + L2 LINE L2 2286 2534 -780 276 261 94 43 chr13 10122306 10122444 -91750725 + L2 LINE L2 2586 2730 -584 180 278 250 11 chr13 10122653 10122829 -91750340 + L2 LINE L2 3084 3301 -12 480 292 101 14 chr13 10123062 10123281 -91749888 + MIR SINE MIR 15 252 -10 1272 139 46 0 chr13 10125140 10125377 -91747792 + L1MA8 LINE L1 6043 6290 -1 2379 70 0 42 chr13 10125788 10126100 -91747069 - AluSx SINE Alu -13 299 1 417 318 68 6 chr13 10126427 10126603 -91746566 + MIR SINE MIR 4 190 -72 2118 95 3 7 chr13 10126607 10126926 -91746243 - AluSx SINE Alu 0 318 1 261 245 31 31 chr13 10127252 10127350 -91745819 - Charlie7 DNA MER1_type -2 2610 2513 2068 114 28 14 chr13 10127351 10127640 -91745529 + AluSx SINE Alu 1 293 -19 2368 92 0 0 chr13 10128486 10128779 -91744390 + AluSx SINE Alu 1 293 -19 210 71 0 0 chr13 10129231 10129259 -91743910 + (A)n Simple_repeat Simple_repeat 1 28 0 400 287 53 45 chr13 10129325 10129569 -91743600 - L2 LINE L2 -202 3070 2825 567 274 52 38 chr13 10130223 10130435 -91742734 + MIR SINE MIR 48 262 0 344 301 41 8 chr13 10131381 10131504 -91741665 + MIR3 SINE MIR 78 204 -4 341 22 22 0 chr13 10132016 10132062 -91741107 + (CA)n Simple_repeat Simple_repeat 2 48 0 200 152 0 0 chr13 10132189 10132222 -91740947 - L2 LINE L2 -19 3294 3262 613 278 46 0 chr13 10132307 10132480 -91740689 + MIR SINE MIR 74 254 -8 219 301 94 0 chr13 10132490 10132643 -91740526 - MIR SINE MIR -62 200 33 244 258 152 26 chr13 10132871 10133022 -91740147 - MIR3 SINE MIR -22 186 17 245 310 187 23 chr13 10134057 10134405 -91738764 - L2 LINE L2 -652 2662 2258 395 235 191 0 chr13 10134833 10134969 -91738200 + L1MC4 LINE L1 6459 6620 -1422 349 222 0 0 chr13 10134970 10135051 -91738118 - MLT1B LTR MaLR 0 390 310 1251 251 25 0 chr13 10135107 10135462 -91737707 + L1MC4 LINE L1 7268 7631 -411 398 238 20 46 chr13 10135544 10135695 -91737474 + L1MC4 LINE L1 7756 7902 -140 480 273 0 15 chr13 10135774 10135906 -91737263 - MIR3 SINE MIR -38 170 41 183 302 0 0 chr13 10136008 10136051 -91737118 - MIR SINE MIR -123 139 97 197 377 121 14 chr13 10136096 10136319 -91736850 - L3 LINE CR1 -1076 501 255 646 298 73 21 chr13 10136791 10137223 -91735946 - L1MC/D LINE L1 -519 5645 5257 723 265 69 52 chr13 10138144 10138435 -91734734 - L3 LINE CR1 -3 1574 1279 231 250 0 0 chr13 10138435 10138483 -91734686 - L3 LINE CR1 -459 1118 1071 799 164 53 107 chr13 10138524 10138594 -91734575 - MLT1D LTR MaLR 0 505 433 1997 115 0 0 chr13 10138594 10138918 -91734251 + AluY SINE Alu 3 326 0 799 164 53 107 chr13 10138918 10139070 -91734099 - MLT1D LTR MaLR -72 433 293 1004 304 193 8 chr13 10139177 10139224 -91733945 - L2 LINE L2 -727 2587 2550 845 189 77 97 chr13 10139224 10139574 -91733595 + MER2 DNA MER2_type 2 344 0 1004 304 193 8 chr13 10139574 10140111 -91733058 - L2 LINE L2 -764 2550 1895 417 304 18 28 chr13 10140634 10140851 -91732318 + MLT1J LTR MaLR 297 511 0 227 293 37 0 chr13 10140938 10141020 -91732149 + MLT1J LTR MaLR 119 203 -308 454 186 42 145 chr13 10141210 10141403 -91731766 + MLT1L LTR MaLR 443 615 0 258 310 134 14 chr13 10141904 10142046 -91731123 + MER5B DNA MER1_type 8 166 -12 333 239 0 0 chr13 10142065 10142077 -91731092 + MER3 DNA MER1_type 37 48 -161 252 196 22 87 chr13 10142077 10142169 -91731000 - MER3 DNA MER1_type -1 208 123 * 1492 145 110 3 chr13 10142160 10142505 -91730664 + MER3 DNA MER1_type 2242 2623 0 242 208 42 0 chr13 10143008 10143056 -91730113 - MER2 DNA MER2_type -25 320 271 827 169 22 34 chr13 10143116 10143294 -91729875 - MER2 DNA MER2_type -169 176 1 33 73 0 0 chr13 10143925 10143993 -91729176 + AT_rich Low_complexity Low_complexity 1 68 0 183 290 69 99 chr13 10144055 10144186 -91728983 - L2 LINE L2 -6 3266 3140 25 31 0 0 chr13 10145704 10145736 -91727433 + AT_rich Low_complexity Low_complexity 1 32 0 1945 170 13 0 chr13 10145985 10146291 -91726878 + AluJo SINE Alu 1 310 -2 821 177 74 37 chr13 10148427 10148698 -91724471 + L1MC5 LINE L1 7633 7913 -48 2331 95 3 7 chr13 10149677 10149983 -91723186 - AluSx SINE Alu -7 305 1 812 231 113 5 chr13 10150439 10150642 -91722527 + MIR SINE MIR 26 250 -12 753 197 0 0 chr13 10152081 10152208 -91720961 - FRAM SINE Alu -49 127 1 187 51 0 51 chr13 10152422 10152461 -91720708 + (CA)n Simple_repeat Simple_repeat 2 38 0 2287 73 10 3 chr13 10152646 10152949 -91720220 - AluSp SINE Alu -8 305 1 39332 60 8 3 chr13 10153223 10159345 -91713824 - L1PA5 LINE L1 -4 6150 1 25 31 0 0 chr13 10159350 10159382 -91713787 + AT_rich Low_complexity Low_complexity 1 32 0 450 243 169 52 chr13 10159550 10160615 -91712554 - L1ME LINE L1 -3617 2463 1249 270 0 0 0 chr13 10160698 10160728 -91712441 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1698 138 0 0 chr13 10160741 10160980 -91712189 - AluSx SINE Alu -57 255 17 501 241 161 54 chr13 10161053 10161480 -91711689 - L1ME LINE L1 -4946 1134 488 339 303 90 90 chr13 10161783 10162205 -91710964 - L1ME LINE L1 -5612 458 37 330 26 0 0 chr13 10162261 10162300 -91710869 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 686 321 194 28 chr13 10162379 10162852 -91710317 + L2 LINE L2 2401 2952 -362 2241 92 0 64 chr13 10162862 10163190 -91709979 - AluSc SINE Alu -2 307 1 370 305 188 13 chr13 10163302 10163458 -91709711 + L2 LINE L2 3033 3160 -153 858 36 0 0 chr13 10163458 10163568 -91709601 + (TA)n Simple_repeat Simple_repeat 2 111 0 370 305 188 13 chr13 10163568 10163650 -91709519 + L2 LINE L2 3160 3313 0 394 266 68 79 chr13 10163654 10163831 -91709338 - MIR SINE MIR -19 243 69 21 100 0 0 chr13 10163978 10164048 -91709121 + AT_rich Low_complexity Low_complexity 1 70 0 24 32 0 0 chr13 10164245 10164276 -91708893 + AT_rich Low_complexity Low_complexity 1 31 0 2157 80 21 10 chr13 10164443 10164731 -91708438 - AluSg SINE Alu -12 298 8 355 322 34 20 chr13 10164736 10164885 -91708284 - L2 LINE L2 0 3313 3163 1653 108 24 12 chr13 10165026 10165276 -91707893 - AluSg SINE Alu -50 260 8 1239 287 19 16 chr13 10165282 10165648 -91707521 - L2 LINE L2 0 3313 2947 1591 61 0 0 chr13 10166662 10166859 -91706310 + AluY SINE Alu 106 302 -9 275 323 134 65 chr13 10166906 10167092 -91706077 + L2 LINE L2 3058 3256 -16 578 231 67 31 chr13 10167108 10167303 -91705866 + MER3 DNA MER1_type 7 208 -1 2523 60 7 0 chr13 10167578 10167880 -91705289 - AluSp SINE Alu -8 305 2 229 282 0 26 chr13 10169668 10169746 -91703423 + CT-rich Low_complexity Low_complexity 3 78 0 2463 75 10 0 chr13 10170071 10170378 -91702791 - AluSp SINE Alu -2 311 2 26 30 0 0 chr13 10171808 10171841 -91701328 + AT_rich Low_complexity Low_complexity 1 33 0 40653 48 5 3 chr13 10171846 10177988 -91695181 + L1PA3 LINE L1 1 6155 0 6724 56 24 0 chr13 10178004 10179660 -91693509 + L1PA7 LINE L1 4480 6154 0 228 170 198 28 chr13 10180027 10180133 -91693036 + MARNA DNA Mariner 21 144 -442 332 289 134 36 chr13 10180245 10180498 -91692671 + MARNA DNA Mariner 210 487 -99 245 303 18 9 chr13 10180879 10180988 -91692181 + L1ME LINE L1 5560 5669 -452 5692 249 58 42 chr13 10181244 10183547 -91689622 + L1PA12 LINE L1 856 3196 -4388 900 174 47 0 chr13 10183691 10183863 -91689306 + MER20 DNA MER1_type 40 219 0 23 0 0 0 chr13 10185043 10185066 -91688103 + AT_rich Low_complexity Low_complexity 1 23 0 280 313 113 5 chr13 10185092 10185287 -91687882 - MIR SINE MIR -44 218 3 387 281 10 25 chr13 10186248 10186366 -91686803 - MIR SINE MIR -78 130 32 288 291 46 40 chr13 10187069 10187220 -91685949 - MER117 DNA MER1_type -39 158 7 1988 156 3 3 chr13 10187421 10187728 -91685441 - AluSx SINE Alu -5 307 1 231 245 0 82 chr13 10188142 10188240 -91684929 + MER5B DNA MER1_type 59 148 -30 259 290 43 0 chr13 10188764 10188857 -91684312 - L1ME4a LINE L1 -26 6095 5999 * 2606 218 42 55 chr13 10188851 10189712 -91683457 - L1P LINE L1 -2684 3462 2613 209 250 13 26 chr13 10189856 10189932 -91683237 - L2 LINE L2 -30 3283 3209 1855 148 3 10 chr13 10191063 10191373 -91681796 - L1MB7 LINE L1 -1 6183 5876 574 176 20 0 chr13 10191413 10191515 -91681654 + MER94 DNA DNA 2 105 -29 5322 137 33 16 chr13 10193277 10194165 -91679004 - MER4D LTR ERV1 0 903 1 2230 97 7 3 chr13 10194554 10194844 -91678325 + AluSx SINE Alu 1 291 -21 199 319 153 0 chr13 10194867 10194939 -91678230 - MER5A DNA MER1_type -70 119 37 316 241 277 0 chr13 10195718 10195855 -91677314 + MER5A DNA MER1_type 15 189 0 455 238 85 14 chr13 10197551 10197692 -91675477 + MIR SINE MIR 43 192 -62 28 50 0 17 chr13 10199609 10199630 -91673539 + AT_rich Low_complexity Low_complexity 1 21 -38 2083 113 0 10 chr13 10199630 10199922 -91673247 + AluSp SINE Alu 1 289 -24 28 50 0 17 chr13 10199922 10199960 -91673209 + AT_rich Low_complexity Low_complexity 21 59 0 797 171 0 0 chr13 10200676 10200816 -91672353 - L1MB7 LINE L1 -19 6165 6026 1967 192 109 6 chr13 10201170 10201638 -91671531 - L1MD1 LINE L1 -9 6233 5718 401 323 15 0 chr13 10203130 10203263 -91669906 + MIR SINE MIR 13 147 -115 1336 225 208 47 chr13 10205252 10205711 -91667458 + MLT1L LTR MaLR 1 557 -58 1014 167 84 47 chr13 10205711 10205926 -91667243 + MER58A DNA MER1_type 1 223 -1 1336 225 208 47 chr13 10205926 10205994 -91667175 + MLT1L LTR MaLR 557 613 -2 991 246 156 31 chr13 10206114 10206617 -91666552 - MLT1G1 LTR MaLR -23 544 5 2155 105 3 45 chr13 10206620 10206934 -91666235 + AluSx SINE Alu 3 303 -9 229 282 26 26 chr13 10207194 10207272 -91665897 - MLT1G1-int LTR MaLR -262 1109 1032 2813 101 30 9 chr13 10207722 10208159 -91665010 - L1PB2 LINE L1 -1 6150 5705 272 218 46 46 chr13 10208571 10208658 -91664511 - MLT1G1-int LTR MaLR -1648 87 1 273 167 73 177 chr13 10208658 10208695 -91664474 - MLT1G1 LTR MaLR 0 542 503 2090 141 0 10 chr13 10208695 10208994 -91664175 + AluSx SINE Alu 1 296 -16 273 167 73 177 chr13 10208994 10209148 -91664021 - MLT1G1 LTR MaLR -39 503 371 274 332 25 39 chr13 10209685 10209968 -91663201 + L2 LINE L2 1955 2233 -1081 1512 264 126 7 chr13 10209975 10210426 -91662743 - MLT1J LTR MaLR -6 505 1 416 270 220 5 chr13 10210426 10210626 -91662543 + L2 LINE L2 2230 2472 -842 305 154 152 74 chr13 10210909 10211032 -91662137 + MLT1I LTR MaLR 275 549 0 336 335 32 27 chr13 10211033 10211254 -91661915 + L2 LINE L2 2477 2698 -616 374 227 34 0 chr13 10213268 10213356 -91659813 - L2 LINE L2 0 3313 3223 340 286 88 78 chr13 10214572 10215005 -91658164 + L2 LINE L2 1754 2190 -1124 982 312 116 24 chr13 10215009 10215931 -91657238 + L2 LINE L2 2299 3307 -6 2283 119 3 0 chr13 10216108 10216419 -91656750 - AluSx SINE Alu 0 312 1 33 43 0 0 chr13 10216950 10216997 -91656172 + AT_rich Low_complexity Low_complexity 1 47 0 1778 176 0 10 chr13 10217166 10217467 -91655702 - AluJb SINE Alu -14 298 1 388 325 25 6 chr13 10217861 10218018 -91655151 - MIR SINE MIR -74 188 29 311 267 23 0 chr13 10218436 10218522 -91654647 + (CTA)n Simple_repeat Simple_repeat 2 89 0 2586 46 0 0 chr13 10218733 10219035 -91654134 - AluY SINE Alu -9 302 1 2126 103 0 30 chr13 10219768 10220102 -91653067 + AluSx SINE Alu 1 325 0 1602 156 65 91 chr13 10220770 10221017 -91652152 - MLT1B LTR MaLR -16 374 139 2362 102 0 3 chr13 10221017 10221322 -91651847 + AluSc SINE Alu 1 304 -5 1602 156 65 91 chr13 10221322 10221458 -91651711 - MLT1B LTR MaLR -251 139 1 2469 153 32 26 chr13 10221765 10221950 -91651219 + MLT1C LTR MaLR 1 183 -284 2510 39 0 86 chr13 10221950 10222288 -91650881 + AluY SINE Alu 2 310 -1 2469 153 32 26 chr13 10222288 10222566 -91650603 + MLT1C LTR MaLR 183 467 0 2058 129 0 0 chr13 10222593 10222871 -91650298 + AluSx SINE Alu 7 284 -28 387 0 0 0 chr13 10223964 10224007 -91649162 + (TG)n Simple_repeat Simple_repeat 2 44 0 1469 181 67 0 chr13 10224215 10224469 -91648700 + AluJo SINE Alu 25 295 -17 2296 81 0 40 chr13 10224491 10224814 -91648355 + AluY SINE Alu 1 310 -1 2203 112 13 3 chr13 10224827 10225130 -91648039 + AluSq SINE Alu 1 306 -7 219 357 105 12 chr13 10225922 10226093 -91647076 - MIR3 SINE MIR -7 201 15 2413 97 3 0 chr13 10226476 10226784 -91646385 - AluSq SINE Alu -4 309 1 228 366 71 0 chr13 10227487 10227599 -91645570 + L2 LINE L2 3151 3270 -2 1960 244 130 64 chr13 10228189 10228673 -91644496 + HAL1b LINE L1 78 529 -819 1699 129 4 0 chr13 10228673 10228914 -91644255 + AluSg/x SINE Alu 70 311 -1 1960 244 130 64 chr13 10228914 10229099 -91644070 + HAL1b LINE L1 529 700 -648 2393 94 0 0 chr13 10229099 10229396 -91643773 - AluSq SINE Alu -15 298 2 1960 244 130 64 chr13 10229396 10229819 -91643350 + HAL1b LINE L1 700 1257 -91 882 118 0 22 chr13 10229819 10229955 -91643214 + FLAM_C SINE Alu 1 133 0 1960 244 130 64 chr13 10229955 10230042 -91643127 + HAL1b LINE L1 1257 1337 -11 2141 161 32 128 chr13 10230435 10230485 -91642684 - L1MB3 LINE L1 0 6183 6130 2042 133 3 7 chr13 10230485 10230778 -91642391 - AluJo SINE Alu -20 292 1 2141 161 32 128 chr13 10230778 10231318 -91641851 - L1MB3 LINE L1 -53 6130 5646 241 340 106 28 chr13 10231418 10231559 -91641610 + L2 LINE L2 3099 3250 -22 1428 155 98 43 chr13 10231648 10231925 -91641244 + AluJb SINE Alu 1 292 -20 1253 241 132 24 chr13 10232078 10232547 -91640622 - MLT2B1 LTR ERVL 0 520 1 1670 96 187 109 chr13 10232622 10232997 -91640172 - MER4A LTR ERV1 0 664 261 566 165 21 10 chr13 10232997 10233094 -91640075 - MER4A LTR ERV1 -566 98 1 2328 112 0 6 chr13 10233251 10233564 -91639605 + AluSx SINE Alu 1 311 -1 690 306 161 34 chr13 10234055 10234621 -91638548 - L3 LINE CR1 -17 1560 923 495 242 72 95 chr13 10234785 10235310 -91637859 + L1MEc LINE L1 1732 2268 -3947 234 191 21 0 chr13 10235310 10235323 -91637846 + Alu SINE Alu 121 134 -166 2030 128 24 0 chr13 10235323 10235613 -91637556 + AluSx SINE Alu 2 298 -14 495 242 72 95 chr13 10235357 10235794 -91637375 + L1MEc LINE L1 2268 2406 -3809 2643 177 75 44 chr13 10235794 10236499 -91636670 - LTR8A LTR ERV1 0 727 1 495 242 72 95 chr13 10236499 10236549 -91636620 + L1MEc LINE L1 2406 2456 -3759 2385 190 6 46 chr13 10236549 10237027 -91636142 + MER66B LTR ERV1 28 486 0 1357 236 62 40 chr13 10237048 10237070 -91636099 + L1MEc LINE L1 2470 2490 -3725 2439 79 3 0 chr13 10237070 10237373 -91635796 + AluSp SINE Alu 1 304 -9 1357 236 62 40 chr13 10237373 10237799 -91635370 + L1MEc LINE L1 2490 2928 -3287 2255 48 0 48 chr13 10237801 10238094 -91635075 + AluY SINE Alu 3 281 -30 563 252 103 70 chr13 10238135 10238580 -91634589 + L1MC4 LINE L1 7576 8035 -7 279 237 0 0 chr13 10238751 10238810 -91634359 + L2 LINE L2 3197 3255 -17 1836 262 50 45 chr13 10238860 10238900 -91634269 - L1ME3 LINE L1 -20 6142 6104 1948 139 139 13 chr13 10238900 10239239 -91633930 + MSTA LTR MaLR 1 394 -34 2371 99 0 0 chr13 10239239 10239541 -91633628 - AluSx SINE Alu -10 302 1 1948 139 139 13 chr13 10239541 10239581 -91633588 + MSTA LTR MaLR 394 428 0 1836 262 50 45 chr13 10239581 10240253 -91632916 - L1ME3 LINE L1 -58 6104 5426 470 244 144 35 chr13 10240255 10240574 -91632595 + L1ME4a LINE L1 5767 6120 -1 216 139 28 7 chr13 10240643 10240733 -91632436 + MIR SINE MIR 108 250 -12 673 239 56 36 chr13 10240765 10241016 -91632153 - L2 LINE L2 -2920 394 139 343 186 34 127 chr13 10241282 10241400 -91631769 - MER5B DNA MER1_type -68 110 4 664 272 90 34 chr13 10241834 10241886 -91631283 - MLT1L LTR MaLR -90 525 477 5707 96 24 32 chr13 10241886 10242803 -91630366 + L1PA13 LINE L1 4572 5471 -692 1582 164 44 0 chr13 10242803 10243078 -91630091 + AluJb SINE Alu 1 287 -25 5707 96 24 32 chr13 10243078 10243764 -91629405 + L1PA13 LINE L1 5471 6161 -2 664 272 90 34 chr13 10243764 10244034 -91629135 - MLT1L LTR MaLR -138 477 185 22 0 0 0 chr13 10244961 10244983 -91628186 + AT_rich Low_complexity Low_complexity 1 22 0 276 275 133 8 chr13 10244987 10245107 -91628062 - MIR SINE MIR -87 175 41 327 127 0 0 chr13 10248803 10248866 -91624303 + (GA)n Simple_repeat Simple_repeat 2 64 0 237 306 47 0 chr13 10249362 10249447 -91623722 - MIR3 SINE MIR -3 205 117 183 100 0 0 chr13 10249965 10249995 -91623174 + (CA)n Simple_repeat Simple_repeat 2 31 0 369 217 12 6 chr13 10250037 10250203 -91622966 + (CA)n Simple_repeat Simple_repeat 2 168 0 252 111 0 0 chr13 10250229 10250274 -91622895 + (CA)n Simple_repeat Simple_repeat 1 45 0 396 0 0 0 chr13 10251454 10251498 -91621671 + (TA)n Simple_repeat Simple_repeat 2 45 0 1961 123 0 17 chr13 10251498 10251800 -91621369 - MER46B DNA MER2_type -63 173 2 2232 108 3 19 chr13 10252422 10252738 -91620431 + AluSq SINE Alu 1 311 -2 234 0 71 24 chr13 10252775 10252817 -91620352 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 246 271 62 33 chr13 10253033 10253195 -91619974 - LTR16A1 LTR ERVL 0 457 327 1839 232 39 43 chr13 10253711 10254198 -91618971 + MLT1J LTR MaLR 9 493 -18 1691 177 17 10 chr13 10254198 10254497 -91618672 - AluJb SINE Alu -11 301 1 66 73 0 0 chr13 10255953 10256089 -91617080 + AT_rich Low_complexity Low_complexity 1 136 0 376 139 60 18 chr13 10256117 10256345 -91616824 + (TA)n Simple_repeat Simple_repeat 1 237 0 615 258 51 32 chr13 10260369 10260586 -91612583 + MIR SINE MIR 29 249 -13 234 267 182 79 chr13 10260901 10261066 -91612103 - MER5A DNA MER1_type -1 188 7 586 296 61 53 chr13 10261358 10261622 -91611547 - L3 LINE CR1 -99 1478 1213 410 254 104 8 chr13 10262463 10262597 -91610572 + L2 LINE L2 3167 3313 0 1033 246 31 31 chr13 10262837 10263093 -91610076 - MIR SINE MIR 0 262 7 25 51 0 0 chr13 10265438 10265477 -91607692 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 10266751 10266772 -91606397 + AT_rich Low_complexity Low_complexity 1 21 0 2089 126 0 3 chr13 10267054 10267347 -91605822 - AluSx SINE Alu -20 292 1 1976 168 0 0 chr13 10267683 10267993 -91605176 - AluJo SINE Alu -2 310 1 2434 92 0 0 chr13 10268021 10268327 -91604842 + AluSc SINE Alu 1 306 -3 21 36 0 0 chr13 10269108 10269136 -91604033 + AT_rich Low_complexity Low_complexity 1 28 0 2147 117 0 3 chr13 10269203 10269493 -91603676 - AluSx SINE Alu -23 289 1 28 0 0 0 chr13 10269837 10269865 -91603304 + AT_rich Low_complexity Low_complexity 1 28 0 445 253 19 37 chr13 10271091 10271253 -91601916 + L1MC4 LINE L1 5743 5901 -1907 424 230 158 25 chr13 10271281 10271456 -91601713 + MLT1B LTR MaLR 1 177 -188 319 237 0 13 chr13 10271549 10271572 -91601597 + L1MC4 LINE L1 6624 6646 -1396 2587 50 0 0 chr13 10271572 10271870 -91601299 + AluY SINE Alu 3 300 -11 319 237 0 13 chr13 10271870 10271922 -91601247 + L1MC4 LINE L1 6646 6698 -1344 1087 126 6 6 chr13 10272102 10272282 -91600887 + AluSq SINE Alu 126 305 0 300 212 235 15 chr13 10272360 10272492 -91600677 + L1ME4a LINE L1 5950 6110 -11 797 134 42 14 chr13 10272642 10272784 -91600385 + L1MC1 LINE L1 6177 6322 -11 1672 159 3 59 chr13 10272785 10273106 -91600063 + AluJo SINE Alu 1 303 -9 183 139 0 0 chr13 10273340 10273376 -91599793 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr13 10273576 10273600 -91599569 + AT_rich Low_complexity Low_complexity 1 24 0 243 242 0 48 chr13 10274006 10274068 -91599101 + L2 LINE L2 3249 3307 -6 22 0 0 0 chr13 10275050 10275072 -91598097 + AT_rich Low_complexity Low_complexity 1 22 0 1723 168 152 39 chr13 10275675 10275907 -91597262 + L1MD2 LINE L1 5855 6059 -300 216 97 0 0 chr13 10275907 10275938 -91597231 + (CA)n Simple_repeat Simple_repeat 2 32 0 1723 168 152 39 chr13 10275938 10275998 -91597171 + L1MD2 LINE L1 6059 6111 -248 2204 107 0 3 chr13 10275998 10276289 -91596880 - AluSx SINE Alu -22 290 1 1723 168 152 39 chr13 10276289 10276429 -91596740 + L1MD2 LINE L1 6111 6337 -22 22 35 0 0 chr13 10276582 10276611 -91596558 + AT_rich Low_complexity Low_complexity 1 29 0 357 287 116 31 chr13 10277254 10277480 -91595689 + L2 LINE L2 2755 3002 -270 965 162 9 46 chr13 10279885 10279920 -91593249 + L1MB3 LINE L1 5975 6010 -173 411 21 0 0 chr13 10279920 10279968 -91593201 + (TG)n Simple_repeat Simple_repeat 2 49 0 2118 114 4 0 chr13 10279970 10280250 -91592919 - AluSp SINE Alu -31 282 2 965 162 9 46 chr13 10280250 10280427 -91592742 + L1MB3 LINE L1 6011 6182 -1 265 335 93 14 chr13 10281365 10281580 -91591589 + L2 LINE L2 1792 2023 -1291 338 270 36 9 chr13 10281650 10281761 -91591408 - MER103 DNA DNA -9 157 44 452 267 124 0 chr13 10282363 10282524 -91590645 - MIR SINE MIR -4 258 78 505 218 57 8 chr13 10282753 10282877 -91590292 - MER94 DNA DNA -4 130 1 180 0 0 0 chr13 10283463 10283483 -91589686 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 26 30 0 0 chr13 10283776 10283809 -91589360 + AT_rich Low_complexity Low_complexity 1 33 0 2034 146 3 7 chr13 10284896 10285197 -91587972 - AluSx SINE Alu -12 300 1 195 42 0 0 chr13 10285403 10285427 -91587742 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr13 10286410 10286439 -91586730 + AT_rich Low_complexity Low_complexity 1 29 0 243 243 0 39 chr13 10286508 10286611 -91586558 + (TAA)n Simple_repeat Simple_repeat 1 99 0 261 237 51 0 chr13 10286631 10286690 -91586479 - MIR SINE MIR -34 228 167 1265 202 0 45 chr13 10286697 10286984 -91586185 + AluJo SINE Alu 9 282 -30 32 57 0 0 chr13 10287284 10287337 -91585832 + AT_rich Low_complexity Low_complexity 1 53 0 1499 211 0 7 chr13 10288588 10288873 -91584296 + AluJo SINE Alu 3 285 -27 21 36 0 0 chr13 10288873 10288901 -91584268 + AT_rich Low_complexity Low_complexity 1 28 0 351 132 0 0 chr13 10288905 10288958 -91584211 + MSTC LTR MaLR 372 424 -4 358 204 4 101 chr13 10288963 10289089 -91584080 - L1MC4 LINE L1 -1339 6983 1995 306 0 0 0 chr13 10289090 10289124 -91584045 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 79 0 0 chr13 10289125 10289163 -91584006 - Alu SINE Alu -13 289 252 843 179 0 0 chr13 10289286 10289431 -91583738 + FRAM SINE Alu 1 142 -34 405 0 0 0 chr13 10289431 10289476 -91583693 + (TAA)n Simple_repeat Simple_repeat 3 47 0 211 268 138 89 chr13 10289486 10289579 -91583590 - MIR SINE MIR -15 247 145 2378 138 35 40 chr13 10289579 10290005 -91583164 - MSTC LTR MaLR -4 424 1 211 268 138 89 chr13 10290005 10290034 -91583135 - MIR SINE MIR -117 145 119 1654 151 39 10 chr13 10290554 10290865 -91582304 + L1MB3 LINE L1 5847 6166 -17 2135 109 7 0 chr13 10290876 10291179 -91581990 - AluSg SINE Alu -5 305 1 25 51 0 0 chr13 10291269 10291308 -91581861 + AT_rich Low_complexity Low_complexity 1 39 0 429 295 101 26 chr13 10291331 10291677 -91581492 - L1ME4a LINE L1 -135 5986 5615 531 231 0 0 chr13 10291715 10291849 -91581320 + (TG)n Simple_repeat Simple_repeat 1 134 0 492 301 98 6 chr13 10292682 10292865 -91580304 - L2 LINE L2 -5 3308 3109 319 269 60 118 chr13 10293179 10293543 -91579626 - L2 LINE L2 -1460 1854 1512 1457 235 86 45 chr13 10293546 10294141 -91579028 - L1MC5 LINE L1 -36 7925 7307 195 42 0 0 chr13 10294156 10294180 -91578989 + (GTTTG)n Simple_repeat Simple_repeat 5 28 0 1736 182 132 35 chr13 10294412 10294836 -91578333 + MLT1C LTR MaLR 1 465 -2 1390 266 89 67 chr13 10294839 10295744 -91577425 - L1MC5 LINE L1 -808 7153 6193 1927 120 0 52 chr13 10295744 10296068 -91577101 + AluSx SINE Alu 1 307 -5 1390 266 89 67 chr13 10296068 10296874 -91576295 - L1MC5 LINE L1 -1768 6193 5406 338 250 17 83 chr13 10296956 10297076 -91576093 + L2 LINE L2 3139 3250 -22 240 111 0 0 chr13 10297090 10297126 -91576043 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 743 310 78 23 chr13 10297865 10298505 -91574664 + L1ME3 LINE L1 5143 5826 -336 3195 215 14 9 chr13 10298514 10299164 -91574005 + MER82 DNA MER2_type 1 653 0 753 301 156 42 chr13 10299815 10300410 -91572759 - L3 LINE CR1 -517 1060 398 627 293 149 14 chr13 10301394 10301606 -91571563 - MLT1K LTR MaLR -114 474 292 744 124 62 98 chr13 10301606 10301800 -91571369 + MER53 DNA DNA 3 189 0 627 293 149 14 chr13 10301800 10302004 -91571165 - MLT1K LTR MaLR -296 292 2 208 361 14 0 chr13 10302131 10302203 -91570966 + L2 LINE L2 3151 3223 -49 246 376 15 15 chr13 10302446 10302579 -91570590 - MIR SINE MIR -80 182 50 245 326 133 0 chr13 10302971 10303069 -91570100 + MER91B DNA MER1_type 44 154 -36 279 230 46 35 chr13 10303121 10303208 -91569961 - MIR SINE MIR -111 97 10 2169 241 54 2 chr13 10303983 10304465 -91568704 + MLT2B3 LTR ERVL 2 508 -46 292 143 0 179 chr13 10304479 10304563 -91568606 + Tigger2 DNA MER2_type 1 69 -2649 * 2873 135 23 5 chr13 10304553 10304989 -91568180 + Tigger2 DNA MER2_type 2273 2716 -2 1926 163 60 3 chr13 10305033 10305402 -91567767 - MLT1B LTR MaLR 0 390 1 405 312 35 35 chr13 10306359 10306529 -91566640 + MIR3 SINE MIR 3 172 -36 1890 129 0 0 chr13 10306956 10307302 -91565867 - AluSx SINE Alu 0 347 2 216 0 0 0 chr13 10308178 10308202 -91564967 + (TC)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr13 10308202 10308231 -91564938 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr13 10308534 10308569 -91564600 + AT_rich Low_complexity Low_complexity 1 35 0 1719 211 98 7 chr13 10310568 10310985 -91562184 + MER31A LTR ERV1 1 455 -30 2057 91 14 3 chr13 10311653 10311939 -91561230 + AluSx SINE Alu 1 289 -23 931 149 0 11 chr13 10311939 10312114 -91561055 + (GGAA)n Simple_repeat Simple_repeat 1 173 0 194 213 0 53 chr13 10312114 10312208 -91560961 + GA-rich Low_complexity Low_complexity 4 92 0 401 304 44 38 chr13 10312691 10312849 -91560320 - MIR SINE MIR -15 247 89 198 200 44 0 chr13 10312847 10312892 -91560277 + MIR SINE MIR 50 96 -166 * 941 94 0 0 chr13 10313489 10313616 -91559553 - L1PA8 LINE L1 0 6172 6046 224 306 51 31 chr13 10314005 10314103 -91559066 + MIR SINE MIR 2 101 -161 728 259 58 8 chr13 10314305 10314564 -91558605 - LTR33 LTR ERVL -235 286 15 3093 162 11 22 chr13 10314610 10314965 -91558204 + MER34B LTR ERV1 1 349 -216 2010 92 50 3 chr13 10314965 10315247 -91557922 + AluSg SINE Alu 1 295 -15 3093 162 11 22 chr13 10315247 10315433 -91557736 + MER34B LTR ERV1 349 536 -29 267 348 208 13 chr13 10315737 10316050 -91557119 - L2 LINE L2 -373 2941 2568 523 251 6 55 chr13 10316051 10316214 -91556955 - L2 LINE L2 0 3313 3159 245 258 65 0 chr13 10316774 10316836 -91556333 - L2 LINE L2 -5 3308 3243 2004 117 0 0 chr13 10317259 10317571 -91555598 + AluSx SINE Alu 1 312 0 2682 96 30 6 chr13 10318461 10318827 -91554342 - THE1C LTR MaLR 0 375 1 2527 17 3 0 chr13 10318833 10319123 -91554046 + L1PA2 LINE L1 5861 6151 -4 191 59 0 29 chr13 10319134 10319168 -91554001 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 748 246 36 15 chr13 10319697 10319892 -91553277 + MLT1A1 LTR MaLR 167 365 0 427 341 17 0 chr13 10320210 10320426 -91552743 + (TG)n Simple_repeat Simple_repeat 1 219 0 747 262 113 51 chr13 10321046 10321455 -91551714 + LTR33 LTR ERVL 35 468 -53 284 267 178 20 chr13 10321507 10321608 -91551561 + L2 LINE L2 3192 3308 -5 222 289 62 55 chr13 10322337 10322465 -91550704 + MIR3 SINE MIR 78 206 -2 1900 122 0 34 chr13 10323834 10324287 -91548882 + AluSq SINE Alu 1 443 0 206 346 47 19 chr13 10324289 10324396 -91548773 + L2 LINE L2 3159 3268 -4 601 134 126 0 chr13 10324984 10325111 -91548058 + MER53 DNA DNA 27 169 -20 195 42 0 0 chr13 10325627 10325651 -91547518 + (TG)n Simple_repeat Simple_repeat 1 24 0 573 289 45 20 chr13 10327711 10327912 -91545257 + MIR SINE MIR 9 214 -48 493 264 131 35 chr13 10328433 10328806 -91544363 + L2 LINE L2 2737 3154 -159 2159 102 10 0 chr13 10329308 10329603 -91543566 + AluSx SINE Alu 1 298 -14 3254 162 108 22 chr13 10329893 10330559 -91542610 + LTR8A LTR ERV1 1 723 -4 275 263 11 32 chr13 10330591 10330686 -91542483 + L2 LINE L2 3160 3252 -61 584 241 67 97 chr13 10331040 10331339 -91541830 + MLT1F1 LTR MaLR 1 290 -252 1057 205 68 0 chr13 10331497 10331746 -91541423 + MLT1F1 LTR MaLR 302 567 0 224 273 273 9 chr13 10331772 10331882 -91541287 - MIR SINE MIR -118 144 6 572 253 54 18 chr13 10333943 10334109 -91539060 + MIR SINE MIR 77 248 -14 427 260 140 25 chr13 10334971 10335206 -91537963 - MIR SINE MIR 0 262 1 238 377 85 5 chr13 10336049 10336248 -91536921 - L2 LINE L2 -530 2784 2570 374 358 26 66 chr13 10336328 10336433 -91536736 - L2 LINE L2 0 3272 3164 2049 129 13 10 chr13 10336433 10336742 -91536427 + AluSx SINE Alu 1 310 -2 374 358 26 66 chr13 10336742 10337092 -91536077 - L2 LINE L2 -108 3164 2835 208 377 50 0 chr13 10337171 10337391 -91535778 - L2 LINE L2 -910 2404 2174 356 311 46 13 chr13 10337731 10337882 -91535287 - L2 LINE L2 -17 3255 3100 1885 194 42 33 chr13 10337973 10338431 -91534738 - MLT1C LTR MaLR 0 467 6 254 267 0 0 chr13 10338447 10338507 -91534662 + L2 LINE L2 3246 3305 -8 340 274 141 94 chr13 10338838 10338906 -91534263 + L1MC4a LINE L1 5549 5612 -2196 1638 141 4 16 chr13 10338906 10339155 -91534014 + AluSx SINE Alu 58 303 -9 340 274 141 94 chr13 10339155 10339320 -91533849 + L1MC4a LINE L1 5612 5793 -2015 490 270 104 64 chr13 10339322 10339667 -91533502 - MLT1J LTR MaLR -49 462 104 271 293 8 49 chr13 10339697 10339820 -91533349 + L1MC4a LINE L1 5799 5916 -1892 2206 161 57 92 chr13 10339827 10340460 -91532709 + LTR36 LTR ERV1 1 611 0 396 359 5 26 chr13 10340526 10340718 -91532451 + LTR36-int LTR ERV1 115 302 -1484 1455 137 36 44 chr13 10341267 10341574 -91531595 + LTR36-int LTR ERV1 883 1191 -5407 4087 128 16 12 chr13 10341574 10342216 -91530953 - LTR9B LTR ERV1 0 644 1 1455 137 36 44 chr13 10342216 10342279 -91530890 + LTR36-int LTR ERV1 1191 2479 -4119 265 216 0 0 chr13 10342279 10342330 -91530839 + LTR30 LTR ERV1 1 51 -671 1768 107 44 38 chr13 10342331 10342666 -91530503 + LTR12 LTR ERV1 57 2032 -406 307 286 9 0 chr13 10342667 10342772 -91530397 + LTR30 LTR ERV1 553 658 -64 543 108 0 0 chr13 10342772 10342846 -91530323 + LTR12 LTR ERV1 641 714 0 1844 151 32 26 chr13 10342854 10343136 -91530033 + LTR36-int LTR ERV1 1260 1539 -5137 2411 64 0 7 chr13 10343136 10343431 -91529738 + AluY SINE Alu 17 309 -2 1844 151 32 26 chr13 10343431 10343641 -91529528 + LTR36-int LTR ERV1 1539 3752 -2924 662 117 0 0 chr13 10343632 10343726 -91529443 + LTR36-int LTR ERV1 3975 4068 -2530 * 3350 177 33 20 chr13 10343714 10344354 -91528815 + LTR36-int LTR ERV1 1631 2278 -2602 12677 155 44 65 chr13 10344401 10347205 -91525964 + LTR36-int LTR ERV1 2758 5796 -514 881 179 81 58 chr13 10347251 10347474 -91525695 + LTR36-int LTR ERV1 5923 6150 -181 437 171 1 0 chr13 10347489 10347563 -91525606 + MER49 LTR ERV1 488 557 -165 356 301 75 86 chr13 10347637 10347986 -91525183 + LTR36-int LTR ERV1 6705 7049 -73 2068 151 121 97 chr13 10348026 10348623 -91524546 + LTR36 LTR ERV1 1 611 0 260 122 0 49 chr13 10348930 10348971 -91524198 + MER34C LTR ERV1 1 39 -546 245 260 0 39 chr13 10349489 10349566 -91523603 + MER34 LTR ERV1 67 140 -402 * 1102 208 156 57 chr13 10349539 10349962 -91523207 + MER39 LTR ERV1 220 684 -23 2290 108 0 0 chr13 10350031 10350326 -91522843 - AluSg SINE Alu -15 295 1 2002 148 7 19 chr13 10350938 10351248 -91521921 + AluSx SINE Alu 1 306 -6 794 206 104 128 chr13 10351569 10352060 -91521109 - MER39 LTR ERV1 -80 627 1 22 35 0 0 chr13 10352096 10352125 -91521044 + AT_rich Low_complexity Low_complexity 1 29 0 2113 120 0 13 chr13 10352290 10352590 -91520579 + AluSx SINE Alu 1 296 -16 234 261 0 54 chr13 10352637 10352729 -91520440 + L2 LINE L2 3083 3169 -144 630 143 0 0 chr13 10352749 10352854 -91520315 - L1MB4 LINE L1 -2 6178 6074 446 231 74 84 chr13 10353263 10353445 -91519724 + MER31-int LTR ERV1 1348 1530 -3341 2559 43 0 7 chr13 10353445 10353744 -91519425 - AluY SINE Alu -13 298 2 446 231 74 84 chr13 10353744 10353764 -91519405 + MER31-int LTR ERV1 1530 2493 -2378 512 198 32 0 chr13 10354092 10354218 -91518951 + MER31-int LTR ERV1 1724 1853 -6267 264 123 25 99 chr13 10354221 10354302 -91518867 + MER31-int LTR ERV1 3888 3962 -2636 4623 206 99 72 chr13 10354340 10356988 -91516181 + MER31-int LTR ERV1 2876 7144 -393 2595 158 23 44 chr13 10356988 10357508 -91515661 + LTR54 LTR ERV1 1 509 -1 2211 111 3 7 chr13 10357761 10358059 -91515110 + AluSx SINE Alu 1 297 -15 244 336 35 49 chr13 10358091 10358317 -91514852 + L1MC/D LINE L1 5564 5786 -2022 605 222 122 11 chr13 10358320 10358500 -91514669 - MER63A DNA MER1_type 0 210 11 3973 99 106 2 chr13 10358941 10359524 -91513645 - LTR9B LTR ERV1 0 644 1 306 237 132 91 chr13 10360794 10361013 -91512156 + MIR SINE MIR 14 241 -21 2620 56 0 0 chr13 10361463 10361766 -91511403 + AluY SINE Alu 1 303 -8 21 0 0 0 chr13 10361806 10361827 -91511342 + AT_rich Low_complexity Low_complexity 1 21 0 459 243 34 20 chr13 10361855 10362003 -91511166 - MIR SINE MIR -1 261 112 262 259 28 54 chr13 10362296 10362508 -91510661 + L1MC/D LINE L1 5334 5544 -698 297 302 66 0 chr13 10362863 10362969 -91510200 - MIR3 SINE MIR -44 164 52 806 217 16 5 chr13 10363168 10363352 -91509817 + MER5A DNA MER1_type 1 186 -3 504 215 158 13 chr13 10363362 10363520 -91509649 - MER5A DNA MER1_type 0 189 9 344 193 244 8 chr13 10363606 10363725 -91509444 + MER5A DNA MER1_type 9 155 -34 2002 191 59 65 chr13 10364255 10364357 -91508812 - MLT1D LTR MaLR 0 505 404 2044 82 104 0 chr13 10364357 10364626 -91508543 + AluSx SINE Alu 1 297 -15 2002 191 59 65 chr13 10364626 10365031 -91508138 - MLT1D LTR MaLR -101 404 1 346 318 129 9 chr13 10366077 10366294 -91506875 - MIR SINE MIR -1 261 19 298 300 181 6 chr13 10367487 10367647 -91505522 + MIR SINE MIR 54 241 -21 325 157 0 0 chr13 10367978 10368029 -91505140 - LTR67 LTR ERVL 0 557 507 747 202 202 22 chr13 10368104 10368332 -91504837 - MLT1J1 LTR MaLR -175 271 3 262 295 13 0 chr13 10368395 10368473 -91504696 - LTR67 LTR ERVL -476 81 3 337 183 28 28 chr13 10368519 10368590 -91504579 - MLT1F LTR MaLR -131 411 341 440 214 51 17 chr13 10368767 10368884 -91504285 - L2 LINE L2 0 3313 3193 2161 111 7 33 chr13 10368931 10369237 -91503932 - AluSx SINE Alu -14 298 1 835 124 23 0 chr13 10370555 10370684 -91502485 + L1MB3 LINE L1 5982 6113 -70 2195 115 0 3 chr13 10371028 10371323 -91501846 + AluSx SINE Alu 1 294 -18 1759 169 48 67 chr13 10371476 10371818 -91501351 + MER31-int LTR ERV1 2654 2988 -3343 2269 137 6 3 chr13 10371818 10372154 -91501015 + MER1B DNA MER1_type 1 337 0 1759 169 48 67 chr13 10372154 10372230 -91500939 + MER31-int LTR ERV1 2988 3064 -3267 282 188 101 0 chr13 10372231 10372300 -91500869 + MER31-int LTR ERV1 1339 1414 -3522 * 482 260 84 36 chr13 10372241 10372491 -91500678 + LTR57-int LTR ERVL 1249 1510 -3833 1006 228 45 66 chr13 10372555 10373327 -91499842 + MER31-int LTR ERV1 1736 4352 -528 676 168 41 46 chr13 10373463 10373659 -91499510 + MER31-int LTR ERV1 3536 3730 -2868 2037 138 0 14 chr13 10373675 10373972 -91499197 - AluSx SINE Alu -19 293 1 1333 209 95 75 chr13 10374200 10374808 -91498361 + MER31-int LTR ERV1 2481 3075 -3523 1660 190 3 3 chr13 10374808 10375097 -91498072 + AluJo SINE Alu 1 289 -23 1333 209 95 75 chr13 10375097 10375245 -91497924 + MER31-int LTR ERV1 3075 3219 -3379 2276 75 4 0 chr13 10375245 10375554 -91497615 - AluY SINE Alu 0 310 1 1333 209 95 75 chr13 10375554 10376102 -91497067 + MER31-int LTR ERV1 3219 3755 -2843 2813 109 28 14 chr13 10376102 10376524 -91496645 - MSTA LTR MaLR 0 428 1 1333 209 95 75 chr13 10376524 10376551 -91496618 + MER31-int LTR ERV1 3755 3780 -2818 2181 89 17 0 chr13 10376551 10376843 -91496326 + AluY SINE Alu 1 297 -14 1333 209 95 75 chr13 10376843 10376879 -91496290 + MER31-int LTR ERV1 3780 5592 -1006 574 207 27 27 chr13 10376993 10377063 -91496106 + MER31-int LTR ERV1 4256 4325 -611 1572 123 9 13 chr13 10377063 10377291 -91495878 - AluSg/x SINE Alu -10 302 76 574 207 27 27 chr13 10377291 10377370 -91495799 + MER31-int LTR ERV1 4324 4405 -531 2188 116 17 0 chr13 10377468 10377793 -91495376 + AluSx SINE Alu 1 312 0 2881 118 18 51 chr13 10379128 10379618 -91493551 + MER101 LTR ERV1 1 474 0 1467 183 166 46 chr13 10380249 10380660 -91492509 + MLT1C LTR MaLR 8 467 0 276 293 28 19 chr13 10381053 10381120 -91492049 + MIR SINE MIR 86 156 -106 1300 218 29 55 chr13 10381120 10381500 -91491669 + MLT1A2 LTR MaLR 1 370 -4 276 293 28 19 chr13 10381500 10381538 -91491631 + MIR SINE MIR 156 192 -70 259 297 54 0 chr13 10382277 10382388 -91490781 + MLT1L LTR MaLR 468 584 -31 1872 153 49 52 chr13 10382663 10382808 -91490361 - MLT1A1 LTR MaLR 0 365 221 2964 80 3 0 chr13 10382808 10383182 -91489987 + THE1C LTR MaLR 1 375 0 1872 153 49 52 chr13 10383182 10383402 -91489767 - MLT1A1 LTR MaLR -144 221 1 2352 102 0 13 chr13 10383457 10383772 -91489397 - AluSx SINE Alu -1 311 1 4192 188 55 18 chr13 10383845 10384676 -91488493 - MER21B LTR ERV1 -1 862 1 189 361 34 17 chr13 10384892 10385011 -91488158 + MIR SINE MIR 24 144 -64 203 310 54 93 chr13 10385147 10385197 -91487972 + MIR SINE MIR 50 100 -162 2071 120 20 7 chr13 10385197 10385497 -91487672 - AluSq SINE Alu -9 304 1 203 310 54 93 chr13 10385497 10385575 -91487594 + MIR SINE MIR 100 173 -89 307 266 43 29 chr13 10386385 10386524 -91486645 + MLT1I LTR MaLR 80 220 -189 2724 35 0 3 chr13 10387077 10387389 -91485780 - AluY SINE Alu 0 311 1 2229 177 44 18 chr13 10387645 10388098 -91485071 - MLT1C LTR MaLR -2 465 1 348 314 9 9 chr13 10388575 10388680 -91484489 - L2 LINE L2 -7 3265 3161 456 215 0 0 chr13 10388855 10388934 -91484235 + L2 LINE L2 3221 3299 -14 1560 98 0 0 chr13 10388938 10389152 -91484017 + AluSg/x SINE Alu 89 302 -8 2224 64 0 4 chr13 10389797 10390121 -91483048 + AluY SINE Alu 1 323 0 876 294 39 56 chr13 10390151 10390637 -91482532 + L2 LINE L2 2429 2906 -408 602 298 0 42 chr13 10390750 10390918 -91482251 + L2 LINE L2 3110 3270 -2 492 307 34 65 chr13 10391249 10391601 -91481568 - MLT1K LTR MaLR -2 586 246 688 286 105 21 chr13 10391975 10392300 -91480869 - L1MC4a LINE L1 -1888 5920 5569 263 288 0 12 chr13 10392388 10392468 -91480701 + MER5A DNA MER1_type 111 189 0 447 327 32 8 chr13 10392527 10392778 -91480391 - L1MC4a LINE L1 -2298 5510 5254 268 146 182 0 chr13 10392939 10392994 -91480175 + MER5B DNA MER1_type 114 178 0 207 326 126 0 chr13 10392994 10393081 -91480088 - L2 LINE L2 -52 3220 3122 189 242 162 40 chr13 10393634 10393733 -91479436 + L2 LINE L2 3162 3272 0 202 213 21 43 chr13 10393809 10393856 -91479313 + MIR SINE MIR 215 260 -2 1622 184 0 0 chr13 10395637 10395914 -91477255 + AluJo SINE Alu 1 277 -35 272 281 163 13 chr13 10398730 10398883 -91474286 - MIR SINE MIR -78 184 9 256 140 43 183 chr13 10399086 10399132 -91474037 - MIR SINE MIR -74 188 159 1530 197 0 3 chr13 10399132 10399312 -91473857 - AluJb SINE Alu 0 310 130 207 0 0 0 chr13 10399312 10399335 -91473834 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1530 197 0 3 chr13 10399335 10399465 -91473704 - AluJb SINE Alu -180 130 1 256 140 43 183 chr13 10399465 10399510 -91473659 - MIR SINE MIR -103 159 109 731 236 194 37 chr13 10399592 10399995 -91473174 - LTR33 LTR ERVL -54 467 2 180 0 0 0 chr13 10400746 10400766 -91472403 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1585 163 99 23 chr13 10401337 10401681 -91471488 + MLT1B LTR MaLR 21 390 0 302 302 138 2 chr13 10401923 10402114 -91471055 + MIR SINE MIR 21 242 -20 182 103 0 26 chr13 10402576 10402615 -91470554 + (CGG)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr13 10403417 10403446 -91469723 + AT_rich Low_complexity Low_complexity 1 29 0 2067 163 41 0 chr13 10403533 10403871 -91469298 - MLT1A1 LTR MaLR -13 352 1 1091 171 28 0 chr13 10404910 10405091 -91468078 + MER5A DNA MER1_type 2 187 -2 393 282 72 147 chr13 10405314 10405490 -91467679 + L3 LINE CR1 570 757 -820 1859 147 43 40 chr13 10405490 10405864 -91467305 - THE1C LTR MaLR 0 375 1 393 282 72 147 chr13 10405864 10406190 -91466979 + L3 LINE CR1 757 1024 -553 1332 186 87 115 chr13 10406190 10406637 -91466532 + MLT1D LTR MaLR 1 435 -70 1915 115 0 0 chr13 10406637 10406960 -91466209 - AluY SINE Alu 0 325 3 1332 186 87 115 chr13 10406960 10407030 -91466139 + MLT1D LTR MaLR 435 505 0 393 282 72 147 chr13 10407030 10407119 -91466050 + L3 LINE CR1 1024 1118 -459 758 265 69 52 chr13 10407119 10407410 -91465759 + L3 LINE CR1 1279 1574 -3 791 311 66 16 chr13 10408331 10408763 -91464406 + L1MC/D LINE L1 5257 5705 -503 217 372 121 14 chr13 10409235 10409458 -91463711 + L3 LINE CR1 255 501 -1076 188 302 0 0 chr13 10409503 10409546 -91463623 + MIR SINE MIR 97 139 -123 491 238 82 14 chr13 10409648 10409795 -91463374 + MIR3 SINE MIR 41 197 -11 1378 256 41 5 chr13 10409859 10410447 -91462722 - L1MC4 LINE L1 -93 7715 7188 379 222 0 0 chr13 10410503 10410584 -91462585 + MLT1B LTR MaLR 310 390 0 447 235 191 0 chr13 10410585 10410721 -91462448 - L1MC4 LINE L1 -1422 6620 6459 304 310 187 23 chr13 10411149 10411497 -91461672 + L2 LINE L2 2258 2662 -652 182 320 97 26 chr13 10411805 10412033 -91461136 + L2 LINE L2 2658 2901 -413 234 271 152 26 chr13 10412532 10412683 -91460486 + MIR3 SINE MIR 17 186 -22 273 307 119 0 chr13 10412911 10413097 -91460072 + MIR SINE MIR 33 245 -17 * 675 272 46 0 chr13 10413074 10413247 -91459922 - MIR SINE MIR -8 254 74 194 236 73 36 chr13 10413310 10413332 -91459837 + MIR SINE MIR 193 249 -13 200 182 0 0 chr13 10413332 10413365 -91459804 + L2 LINE L2 3262 3294 -19 323 23 23 0 chr13 10413492 10413536 -91459633 + (TG)n Simple_repeat Simple_repeat 2 46 0 370 301 41 8 chr13 10414049 10414172 -91458997 - MIR3 SINE MIR -4 204 78 609 274 53 36 chr13 10415118 10415343 -91457826 - MIR SINE MIR 0 262 32 448 287 53 45 chr13 10415984 10416228 -91456941 + L2 LINE L2 2825 3070 -202 210 71 0 0 chr13 10416294 10416322 -91456847 + (T)n Simple_repeat Simple_repeat 1 28 0 2211 92 0 0 chr13 10416774 10417067 -91456102 - AluSx SINE Alu -19 293 1 1916 114 28 14 chr13 10417913 10418202 -91454967 - AluSx SINE Alu -19 293 1 271 245 31 31 chr13 10418203 10418301 -91454868 + Charlie7 DNA MER1_type 2513 2610 -2 1969 95 3 7 chr13 10418627 10418946 -91454223 + AluSx SINE Alu 1 318 0 437 318 68 6 chr13 10418950 10419126 -91454043 - MIR SINE MIR -72 190 4 2252 67 0 41 chr13 10419453 10419767 -91453402 + AluSx SINE Alu 1 301 -11 1317 143 46 0 chr13 10420179 10420416 -91452753 - L1MA8 LINE L1 -1 6290 6043 520 292 101 14 chr13 10422275 10422494 -91450675 - MIR SINE MIR -10 252 15 208 278 250 11 chr13 10422727 10422903 -91450266 - L2 LINE L2 -12 3301 3084 265 275 124 34 chr13 10423087 10423265 -91449904 - L2 LINE L2 -554 2760 2567 428 278 114 18 chr13 10423629 10423856 -91449313 - L2 LINE L2 -780 2534 2286 201 345 12 0 chr13 10423905 10423989 -91449180 + C-rich Low_complexity Low_complexity 6 90 0 23 33 0 0 chr13 10424047 10424077 -91449092 + AT_rich Low_complexity Low_complexity 1 30 0 537 306 6 28 chr13 10424268 10424448 -91448721 - MIR SINE MIR -71 191 16 396 259 118 55 chr13 10424961 10425436 -91447733 + L1ME LINE L1 1930 2434 -3962 319 266 90 27 chr13 10425459 10425681 -91447488 + L1ME LINE L1 2494 2729 -3486 937 235 195 71 chr13 10425698 10425971 -91447198 + L1ME LINE L1 2803 3041 -3174 606 188 0 58 chr13 10425971 10426109 -91447060 + FLAM_A SINE Alu 1 130 -3 2369 69 0 0 chr13 10426111 10426415 -91446754 + AluY SINE Alu 1 304 -7 937 235 195 71 chr13 10426415 10427126 -91446043 + L1ME LINE L1 3041 3913 -2302 369 278 112 12 chr13 10427164 10427333 -91445836 + L1ME LINE L1 5679 5864 -326 426 73 0 0 chr13 10427390 10427445 -91445724 - MER57A LTR ERV1 -348 55 1 225 0 0 0 chr13 10427726 10427751 -91445418 + (TC)n Simple_repeat Simple_repeat 2 26 0 303 266 89 24 chr13 10428031 10428155 -91445014 + MER117 DNA MER1_type 11 142 -55 231 315 0 0 chr13 10428204 10428281 -91444888 + MIR SINE MIR 45 121 -87 532 267 132 39 chr13 10428287 10428596 -91444573 + MER90 LTR ERV1 1 280 -334 2199 88 0 52 chr13 10428596 10428924 -91444245 - AluSx SINE Alu -1 311 1 532 267 132 39 chr13 10428924 10429048 -91444121 + MER90 LTR ERV1 280 612 -2 306 303 115 8 chr13 10429049 10429171 -91443998 + MIR SINE MIR 122 256 -6 888 225 118 51 chr13 10429700 10430474 -91442695 - Charlie7 DNA MER1_type -119 2493 1570 393 250 97 34 chr13 10430600 10430776 -91442393 - Charlie7 DNA MER1_type -2360 252 66 21 71 0 0 chr13 10432632 10432674 -91440495 + AT_rich Low_complexity Low_complexity 1 42 0 2202 78 0 42 chr13 10434627 10434935 -91438234 + AluSq SINE Alu 1 295 -18 208 83 42 42 chr13 10434935 10434983 -91438186 + (TTAAA)n Simple_repeat Simple_repeat 1 48 0 250 250 25 12 chr13 10436789 10436869 -91436300 + C-rich Low_complexity Low_complexity 3 83 0 195 42 0 0 chr13 10437044 10437068 -91436101 + (CGG)n Simple_repeat Simple_repeat 2 25 0 180 125 159 182 chr13 10438094 10438182 -91434987 + MIR SINE MIR 127 212 -50 227 151 302 0 chr13 10438224 10438277 -91434892 - L2 LINE L2 0 3272 3204 216 262 0 0 chr13 10438245 10438287 -91434882 - L2 LINE L2 -37 3276 3235 * 192 231 0 39 chr13 10438375 10438427 -91434742 - L2 LINE L2 -73 3199 3150 467 189 315 0 chr13 10439338 10439449 -91433720 + MIR3 SINE MIR 35 180 -28 541 155 36 170 chr13 10439520 10439667 -91433502 + L1MB7 LINE L1 6008 6124 -60 2235 183 58 5 chr13 10439667 10440114 -91433055 - L1MB3 LINE L1 0 6183 5713 541 155 36 170 chr13 10440114 10440160 -91433009 + L1MB7 LINE L1 6124 6175 -9 2236 108 0 10 chr13 10440713 10441020 -91432149 + AluSq SINE Alu 2 305 -8 1573 77 5 0 chr13 10441342 10441550 -91431619 - L1MA7 LINE L1 -367 5933 5725 1421 173 24 60 chr13 10441551 10441886 -91431283 + L1MA7 LINE L1 5966 6288 -3 425 293 71 0 chr13 10441898 10442038 -91431131 + MER5B DNA MER1_type 29 178 0 292 276 47 47 chr13 10442566 10442736 -91430433 - L2 LINE L2 -451 2863 2694 291 289 0 12 chr13 10442811 10442894 -91430275 - MIR3 SINE MIR -3 205 124 189 0 0 0 chr13 10443138 10443159 -91430010 + (TG)n Simple_repeat Simple_repeat 2 22 0 2274 75 4 0 chr13 10444027 10444307 -91428862 - AluSp SINE Alu -12 301 21 245 323 52 10 chr13 10444829 10444925 -91428244 + L2 LINE L2 3134 3233 -39 240 248 29 105 chr13 10445351 10445456 -91427713 - MIR3 SINE MIR -3 205 109 2311 104 0 3 chr13 10445708 10446006 -91427163 - AluSx SINE Alu -15 297 1 472 202 0 11 chr13 10446048 10446142 -91427027 - FLAM_A SINE Alu -14 128 36 22 35 0 0 chr13 10446415 10446444 -91426725 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 10446854 10446882 -91426287 + AT_rich Low_complexity Low_complexity 1 28 0 281 267 0 0 chr13 10446924 10446984 -91426185 + MIR SINE MIR 47 106 -156 1705 147 12 0 chr13 10447020 10447272 -91425897 + AluJo SINE Alu 9 263 -49 252 0 0 0 chr13 10447294 10447322 -91425847 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 337 268 62 9 chr13 10447921 10448033 -91425136 + MER94 DNA DNA 1 118 -16 378 313 69 8 chr13 10448207 10448338 -91424831 + MER91C DNA MER1_type 1 139 -1 586 273 64 32 chr13 10448503 10448723 -91424446 + MIR SINE MIR 26 252 -10 239 246 33 0 chr13 10448881 10448942 -91424227 + CT-rich Low_complexity Low_complexity 2 64 0 1798 183 0 7 chr13 10449681 10449981 -91423188 + AluJo SINE Alu 1 298 -14 617 277 113 26 chr13 10450134 10450365 -91422804 - MIR SINE MIR -6 256 6 1262 115 9 71 chr13 10450577 10450662 -91422507 - 7SLRNA srpRNA srpRNA -107 213 124 2092 103 68 0 chr13 10450662 10450954 -91422215 - AluSx SINE Alu 0 312 1 1262 115 9 71 chr13 10450954 10451094 -91422075 - 7SLRNA srpRNA srpRNA -196 124 2 290 297 108 9 chr13 10451095 10451206 -91421963 + L2 LINE L2 2938 3059 -213 569 297 48 52 chr13 10451340 10451650 -91421519 - L2 LINE L2 -49 3264 2956 188 0 74 0 chr13 10453544 10453571 -91419598 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 215 274 189 11 chr13 10453708 10453803 -91419366 - MIR SINE MIR -66 196 85 1745 186 0 0 chr13 10454400 10454701 -91418468 + AluJb SINE Alu 1 301 -11 1237 175 0 27 chr13 10455747 10455993 -91417176 + AluJb SINE Alu 82 312 0 506 284 68 86 chr13 10456266 10456558 -91416611 - L2 LINE L2 -44 3269 2983 990 345 24 3 chr13 10456851 10457228 -91415941 - L2 LINE L2 -343 2971 2587 688 192 69 9 chr13 10457231 10457460 -91415709 + L1MA9 LINE L1 5946 6284 -28 9050 98 54 4 chr13 10457463 10458687 -91414482 + HSMAR1 DNA Mariner 3 1287 0 191 258 43 43 chr13 10458703 10458796 -91414373 - L2 LINE L2 -711 2603 2511 278 282 69 8 chr13 10460081 10460212 -91412957 - L1ME4a LINE L1 -207 5914 5776 2108 108 0 14 chr13 10460389 10460703 -91412466 + AluSx SINE Alu 1 310 0 1876 107 0 4 chr13 10463234 10463478 -91409691 + AluSp SINE Alu 1 243 -70 1098 270 101 64 chr13 10466028 10466386 -91406783 - MLT1J LTR MaLR -6 505 123 2320 110 0 0 chr13 10466386 10466685 -91406484 + AluSg SINE Alu 1 299 -11 1098 270 101 64 chr13 10466685 10466811 -91406358 - MLT1J LTR MaLR -388 123 3 507 274 126 9 chr13 10468074 10468419 -91404750 + MLT1J LTR MaLR 100 509 -2 1545 255 38 14 chr13 10468522 10468946 -91404223 + MER57B LTR ERV1 1 434 0 24 67 0 0 chr13 10469208 10469253 -91403916 + AT_rich Low_complexity Low_complexity 1 45 0 957 166 114 31 chr13 10469980 10470096 -91403073 + MER3 DNA MER1_type 1 106 -103 207 0 0 0 chr13 10470096 10470119 -91403050 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 957 166 114 31 chr13 10470119 10470130 -91403039 + MER3 DNA MER1_type 106 115 -94 2084 107 0 10 chr13 10470130 10470419 -91402750 - AluSx SINE Alu -26 286 1 957 166 114 31 chr13 10470419 10470483 -91402686 + MER3 DNA MER1_type 115 209 0 1578 159 39 26 chr13 10472209 10472517 -91400652 + AluJb SINE Alu 1 312 0 2618 172 32 10 chr13 10472531 10473046 -91400123 + MER41B LTR ERV1 90 474 -12 342 269 138 66 chr13 10473073 10473240 -91399929 + MER5A DNA MER1_type 9 187 -2 379 248 124 0 chr13 10473407 10473528 -91399641 + MIR SINE MIR 119 254 -8 232 356 40 0 chr13 10473553 10473654 -91399515 + MIR SINE MIR 83 187 -75 2069 148 7 0 chr13 10475977 10476310 -91396859 + AluJo SINE Alu 1 335 0 206 357 81 22 chr13 10476537 10476809 -91396360 + L2 LINE L2 2192 2479 -835 1749 189 0 3 chr13 10476920 10477241 -91395928 - AluJb SINE Alu 0 320 1 272 282 145 84 chr13 10477316 10477543 -91395626 + LTR67 LTR ERVL 2 242 -315 324 315 8 24 chr13 10477619 10477746 -91395423 + LTR67 LTR ERVL 419 543 -14 376 139 60 18 chr13 10479496 10479724 -91393445 + (TA)n Simple_repeat Simple_repeat 1 237 0 66 73 0 0 chr13 10479752 10479888 -91393281 + AT_rich Low_complexity Low_complexity 1 136 0 1633 148 3 99 chr13 10481344 10481688 -91391481 + AluJb SINE Alu 1 311 -1 639 220 25 0 chr13 10481721 10481839 -91391330 - FLAM_A SINE Alu -12 121 1 3736 186 72 48 chr13 10481882 10482417 -91390752 + MER21B LTR ERV1 5 569 -294 2049 118 7 17 chr13 10482417 10482706 -91390463 - AluSx SINE Alu -26 286 1 3736 186 72 48 chr13 10482706 10482998 -91390171 + MER21B LTR ERV1 569 852 -11 380 111 22 89 chr13 10483004 10483094 -91390075 - L1ME3 LINE L1 -24 6138 6055 245 91 0 0 chr13 10483095 10483128 -91390041 - MER3 DNA MER1_type -161 48 16 683 209 218 42 chr13 10483142 10483449 -91389720 - L1ME3 LINE L1 -156 6006 5646 2065 188 23 5 chr13 10483449 10483838 -91389331 - MER65C LTR ERV1 0 461 66 355 239 0 0 chr13 10483838 10483909 -91389260 - L1ME3 LINE L1 -528 5636 5566 748 179 28 31 chr13 10483915 10484139 -91389030 - MER3 DNA MER1_type -6 203 1 564 266 57 13 chr13 10484154 10484312 -91388857 - MER112 DNA MER1_type -73 187 23 652 85 11 43 chr13 10485490 10485584 -91387585 + AluY SINE Alu 205 295 -16 803 224 0 0 chr13 10485600 10485747 -91387422 - FAM SINE Alu -10 175 29 6652 168 10 37 chr13 10485849 10487668 -91385501 - L1MA8 LINE L1 0 6291 4534 526 264 39 11 chr13 10488058 10488240 -91384929 - MER117 DNA MER1_type -10 187 1 629 278 45 29 chr13 10488426 10488651 -91384518 + MIR SINE MIR 18 254 -8 1451 198 10 26 chr13 10489617 10489920 -91383249 - AluJo SINE Alu -10 302 5 29 0 0 0 chr13 10489939 10489968 -91383201 + AT_rich Low_complexity Low_complexity 1 29 0 747 165 8 8 chr13 10489969 10490090 -91383079 - FLAM_C SINE Alu -11 122 2 833 225 16 16 chr13 10490150 10490337 -91382832 - MER5A DNA MER1_type -2 187 1 254 153 0 111 chr13 10490355 10490427 -91382742 + HERVL66 LTR ERVL 2277 2340 -1989 234 246 136 9 chr13 10491061 10491171 -91381998 - L1ME4a LINE L1 -4 6117 5994 306 0 0 0 chr13 10491180 10491214 -91381955 + (TA)n Simple_repeat Simple_repeat 2 35 0 2241 83 7 3 chr13 10491214 10491516 -91381653 - AluSc SINE Alu -6 303 1 33 43 0 0 chr13 10491878 10491925 -91381244 + AT_rich Low_complexity Low_complexity 1 47 0 2340 105 0 0 chr13 10492639 10492952 -91380217 - AluSq SINE Alu 0 313 1 24 0 0 0 chr13 10492954 10492978 -91380191 + AT_rich Low_complexity Low_complexity 1 24 0 2066 143 46 108 chr13 10493212 10493710 -91379459 - MLT1C LTR MaLR 0 467 1 2235 129 6 0 chr13 10493731 10494063 -91379106 + MER47A DNA MER2_type 33 366 0 267 360 110 10 chr13 10496690 10496890 -91376279 - MIR SINE MIR -23 239 20 213 339 115 0 chr13 10498789 10498919 -91374250 - L2 LINE L2 0 3272 3128 694 204 138 108 chr13 10498919 10499188 -91373981 + L1ME1 LINE L1 5880 6144 -22 318 338 26 19 chr13 10499308 10499462 -91373707 - L2 LINE L2 -214 3058 2904 454 184 87 0 chr13 10499579 10499682 -91373487 - L1MB3 LINE L1 -7 6176 6065 1612 146 0 15 chr13 10499682 10499943 -91373226 - AluSc SINE Alu -11 298 42 498 118 0 0 chr13 10499943 10500011 -91373158 - AluS SINE Alu -240 73 6 1183 153 23 23 chr13 10500017 10500233 -91372936 - L1MB4 LINE L1 -106 6074 5859 656 219 219 5 chr13 10500942 10501090 -91372079 - MIR SINE MIR 0 262 147 1326 198 183 23 chr13 10501090 10501484 -91371685 - MSTB2 LTR MaLR 0 457 1 656 219 219 5 chr13 10501484 10501545 -91371624 - MIR SINE MIR -115 147 8 368 293 115 21 chr13 10501752 10501943 -91371226 - L2 LINE L2 -1 3312 3104 203 167 0 0 chr13 10502027 10502063 -91371106 + (TG)n Simple_repeat Simple_repeat 1 36 0 2096 172 46 0 chr13 10502167 10502534 -91370635 + MLT1B LTR MaLR 1 384 -6 334 157 0 0 chr13 10502706 10502757 -91370412 - L2 LINE L2 -1 3271 3221 1949 198 77 25 chr13 10503364 10503844 -91369325 + MLT1D LTR MaLR 1 505 0 472 243 81 7 chr13 10503958 10504094 -91369075 + L2 LINE L2 3168 3313 0 1920 151 0 0 chr13 10506039 10506331 -91366838 + AluJo SINE Alu 1 292 -20 425 300 53 24 chr13 10508106 10508276 -91364893 + MIR SINE MIR 67 241 -21 2120 102 0 0 chr13 10508316 10508610 -91364559 + AluY SINE Alu 1 294 -17 349 304 114 19 chr13 10508713 10508871 -91364298 - MER5B DNA MER1_type -5 173 1 293 319 177 0 chr13 10510105 10510246 -91362923 - MIR3 SINE MIR -25 183 18 327 127 0 0 chr13 10511480 10511543 -91361626 + (GA)n Simple_repeat Simple_repeat 2 64 0 255 282 51 0 chr13 10512039 10512117 -91361052 - MIR3 SINE MIR -3 205 124 183 100 0 0 chr13 10512642 10512672 -91360497 + (CA)n Simple_repeat Simple_repeat 2 31 0 369 217 12 6 chr13 10512714 10512880 -91360289 + (CA)n Simple_repeat Simple_repeat 2 168 0 252 111 0 0 chr13 10512906 10512951 -91360218 + (CA)n Simple_repeat Simple_repeat 1 45 0 396 0 0 0 chr13 10514131 10514175 -91358994 + (TA)n Simple_repeat Simple_repeat 2 45 0 1998 123 0 17 chr13 10514175 10514477 -91358692 - MER46B DNA MER2_type -63 173 2 2144 108 3 19 chr13 10515099 10515415 -91357754 + AluSq SINE Alu 1 311 -2 234 0 71 24 chr13 10515452 10515494 -91357675 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 266 271 62 33 chr13 10515710 10515872 -91357297 - LTR16A1 LTR ERVL 0 457 327 1926 222 35 65 chr13 10516388 10516875 -91356294 + MLT1J LTR MaLR 9 481 -30 1666 171 17 10 chr13 10516875 10517174 -91355995 - AluJb SINE Alu -11 301 1 1926 222 35 65 chr13 10517174 10517205 -91355964 + MLT1J LTR MaLR 481 511 0 2296 80 0 3 chr13 10517269 10517569 -91355600 + AluY SINE Alu 1 299 -12 246 342 33 17 chr13 10517629 10517642 -91355527 - MIR SINE MIR -1 261 250 14234 134 49 9 chr13 10517642 10519966 -91353203 - Tigger1 DNA MER2_type 0 2418 3 246 342 33 17 chr13 10519966 10520072 -91353097 - MIR SINE MIR -12 250 140 * 283 343 21 35 chr13 10520061 10520204 -91352965 + L2 LINE L2 2611 2751 -563 1106 277 65 30 chr13 10520210 10520756 -91352413 - MLT1F LTR MaLR -17 525 10 248 194 75 43 chr13 10523181 10523274 -91349895 - L1MC5 LINE L1 -92 7869 7774 1975 158 12 26 chr13 10523865 10524207 -91348962 + MER1B DNA MER1_type 1 337 0 1168 173 59 30 chr13 10525126 10525363 -91347806 - MIR SINE MIR -1 261 18 1954 125 0 0 chr13 10526809 10527088 -91346081 + AluSq SINE Alu 1 279 -34 396 0 0 0 chr13 10527088 10527132 -91346037 + (CA)n Simple_repeat Simple_repeat 2 45 0 257 321 37 68 chr13 10528373 10528563 -91344606 + L3 LINE CR1 1084 1267 -310 330 317 0 10 chr13 10530097 10530198 -91342971 + L1ME4a LINE L1 6022 6121 0 1884 146 3 0 chr13 10530845 10531139 -91342030 - AluJb SINE Alu -17 295 1 2448 74 0 0 chr13 10531315 10531627 -91341542 + AluSx SINE Alu 1 312 0 332 276 61 10 chr13 10532670 10532768 -91340401 + MIR3 SINE MIR 85 187 -21 216 272 25 37 chr13 10532882 10532963 -91340206 + L2 LINE L2 2970 3049 -223 253 275 55 11 chr13 10533128 10533219 -91339950 + LTR48B LTR ERV1 6 100 -544 * 1216 227 82 64 chr13 10533193 10533387 -91339782 + MER39 LTR ERV1 260 449 -258 1997 138 0 0 chr13 10533387 10533678 -91339491 + AluSx SINE Alu 11 301 -11 1216 227 82 64 chr13 10533678 10533923 -91339246 + MER39 LTR ERV1 449 707 0 307 262 136 78 chr13 10536084 10536275 -91336894 - L1M4c LINE L1 -5078 1306 1105 185 0 40 0 chr13 10537038 10537063 -91336106 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1568 161 10 24 chr13 10537070 10537361 -91335808 - AluJb SINE Alu -25 287 1 667 269 58 45 chr13 10537380 10537545 -91335624 - MIR SINE MIR -26 236 66 2262 116 106 30 chr13 10537545 10537587 -91335582 - MSTA LTR MaLR 0 428 391 2129 125 0 0 chr13 10537587 10537892 -91335277 + AluSg SINE Alu 1 305 -5 2262 116 106 30 chr13 10537892 10538247 -91334922 - MSTA LTR MaLR -37 391 1 667 269 58 45 chr13 10538247 10538304 -91334865 - MIR SINE MIR -196 66 11 183 339 15 0 chr13 10539664 10539729 -91333440 - L2 LINE L2 0 3313 3248 1843 123 3 53 chr13 10539750 10540051 -91333118 + AluSq SINE Alu 21 306 -7 746 305 72 84 chr13 10540223 10540958 -91332211 + L3 LINE CR1 831 1556 -21 205 389 44 9 chr13 10541553 10541666 -91331503 + L2 LINE L2 3141 3257 -15 294 318 36 0 chr13 10541870 10541980 -91331189 - L2 LINE L2 0 3272 3159 2230 96 0 10 chr13 10542103 10542395 -91330774 - AluSq SINE Alu -24 289 1 2356 116 0 3 chr13 10542581 10542892 -91330277 + AluSx SINE Alu 1 310 -2 229 282 0 26 chr13 10543217 10543295 -91329874 + GA-rich Low_complexity Low_complexity 3 78 0 5320 80 18 0 chr13 10546248 10546927 -91326242 - LTR8 LTR ERV1 0 691 1 2007 111 42 0 chr13 10548105 10548393 -91324776 + AluY SINE Alu 1 300 -11 286 221 232 0 chr13 10548514 10548609 -91324560 + MER5B DNA MER1_type 5 121 -57 756 180 61 142 chr13 10548636 10548947 -91324222 - L1MC4 LINE L1 -6 8036 7751 220 159 68 0 chr13 10548963 10549007 -91324162 - MER5B DNA MER1_type -125 53 7 2132 95 51 3 chr13 10549314 10549608 -91323561 + AluY SINE Alu 1 308 -3 1293 181 41 24 chr13 10549753 10550046 -91323123 + MER33 DNA MER1_type 27 324 0 2873 168 86 58 chr13 10550640 10551347 -91321822 + LTR8A LTR ERV1 1 727 0 1988 152 62 3 chr13 10553353 10553689 -91319480 + MLT2C1 LTR ERVL 1 356 -41 21 0 0 0 chr13 10553764 10553785 -91319384 + AT_rich Low_complexity Low_complexity 1 21 0 4371 253 44 18 chr13 10553798 10555259 -91317910 + L1M2 LINE L1 2794 4291 -2557 734 184 14 7 chr13 10555259 10555400 -91317769 - L1M4 LINE L1 -1893 4253 4112 4446 156 20 52 chr13 10556180 10556349 -91316820 - L1MC2 LINE L1 -1 6623 6450 1958 132 49 0 chr13 10556349 10556637 -91316532 + AluSc SINE Alu 1 302 -7 4446 156 20 52 chr13 10556637 10557363 -91315806 - L1MC2 LINE L1 -174 6450 5757 1515 156 16 0 chr13 10557374 10557630 -91315539 - L1MA7 LINE L1 0 6291 6032 1460 168 58 0 chr13 10557630 10557995 -91315174 - L1MC2 LINE L1 -747 5679 5379 907 215 62 8 chr13 10558018 10558260 -91314909 - L1MC2 LINE L1 -4109 2317 2063 2036 141 295 4 chr13 10558281 10558755 -91314414 - L1MC2 LINE L1 -4507 1919 1308 810 238 140 98 chr13 10558755 10559108 -91314061 + MER34B LTR ERV1 1 386 -179 3943 128 48 64 chr13 10559108 10559724 -91313445 + LTR8 LTR ERV1 1 606 -85 2654 37 0 0 chr13 10559724 10560022 -91313147 - AluY SINE Alu -13 298 1 3943 128 48 64 chr13 10560022 10560107 -91313062 + LTR8 LTR ERV1 606 691 0 810 238 140 98 chr13 10560107 10560295 -91312874 + MER34B LTR ERV1 386 565 0 336 251 132 12 chr13 10560303 10560470 -91312699 + MIR SINE MIR 48 234 -28 2161 120 0 3 chr13 10561234 10561525 -91311644 + AluY SINE Alu 1 290 -21 1409 209 34 33 chr13 10561578 10562145 -91311024 + L1ME1 LINE L1 5617 6178 0 452 286 45 82 chr13 10562238 10562347 -91310822 + L1ME LINE L1 5384 5496 -625 2441 101 0 0 chr13 10562347 10562654 -91310515 + AluSx SINE Alu 2 308 -4 452 286 45 82 chr13 10562654 10562971 -91310198 + L1ME LINE L1 5496 5794 -327 248 282 0 14 chr13 10563730 10563801 -91309368 + (TG)n Simple_repeat Simple_repeat 2 71 0 22 0 0 0 chr13 10564090 10564112 -91309057 + AT_rich Low_complexity Low_complexity 1 22 0 2006 212 61 50 chr13 10564186 10564827 -91308342 + L1MB8 LINE L1 5531 6178 0 403 295 0 87 chr13 10564820 10565061 -91308108 + L1ME3 LINE L1 5732 5951 -211 * 288 0 0 0 chr13 10565081 10565113 -91308056 + (TA)n Simple_repeat Simple_repeat 2 33 0 31 0 0 0 chr13 10565283 10565314 -91307855 + AT_rich Low_complexity Low_complexity 1 31 0 503 261 137 0 chr13 10565317 10565478 -91307691 - MIR SINE MIR -26 236 54 2035 126 0 38 chr13 10565936 10566253 -91306916 - AluSx SINE Alu -7 305 1 315 237 97 0 chr13 10568293 10568386 -91304783 - MER5B DNA MER1_type -31 147 46 6523 133 25 10 chr13 10568391 10569626 -91303543 - L1MA5A LINE L1 0 6939 5690 1231 189 70 0 chr13 10569614 10569927 -91303242 - L1MA5A LINE L1 -2885 3903 3569 * 21 71 0 0 chr13 10569929 10569971 -91303198 + AT_rich Low_complexity Low_complexity 1 42 0 305 218 0 2 chr13 10569980 10570064 -91303105 - L1ME1 LINE L1 -1 6177 6092 8140 166 38 18 chr13 10570274 10570912 -91302257 - L1PA16 LINE L1 0 6166 5542 279 0 0 0 chr13 10570912 10570943 -91302226 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 8140 166 38 18 chr13 10570943 10572819 -91300350 - L1PA16 LINE L1 -624 5542 3611 1255 240 13 0 chr13 10572828 10573136 -91300033 - L1MA5A LINE L1 -3227 3561 3250 2194 108 16 3 chr13 10573146 10573451 -91299718 - AluSx SINE Alu -3 309 1 7686 203 15 34 chr13 10573451 10575516 -91297653 - L1MA5A LINE L1 -3958 2831 807 5759 219 34 28 chr13 10575515 10576860 -91296309 - L1M2c LINE L1 -5424 1365 14 * 2448 92 3 0 chr13 10576926 10577231 -91295938 + AluSp SINE Alu 1 306 -7 226 189 38 0 chr13 10577275 10577328 -91295841 - MLT1J LTR MaLR -35 476 422 230 178 100 78 chr13 10577512 10577602 -91295567 - MLT1J LTR MaLR -341 170 79 543 237 23 8 chr13 10577674 10577805 -91295364 + MER5B DNA MER1_type 1 133 -45 196 268 36 0 chr13 10578214 10578270 -91294899 + MIR SINE MIR 104 161 -101 * 239 269 0 0 chr13 10578259 10578326 -91294843 - MIR SINE MIR 0 262 196 203 133 22 22 chr13 10578326 10578371 -91294798 + (TA)n Simple_repeat Simple_repeat 2 46 0 635 275 26 36 chr13 10578371 10578544 -91294625 - MIR SINE MIR -57 205 33 2577 132 34 12 chr13 10578544 10578961 -91294208 + MSTA LTR MaLR 3 428 0 635 275 26 36 chr13 10578961 10578980 -91294189 - MIR SINE MIR -229 33 15 1094 80 0 66 chr13 10579108 10579259 -91293910 + AluSq/x SINE Alu 1 141 -171 1001 149 54 0 chr13 10579315 10579483 -91293686 - MSTA LTR MaLR 0 428 252 1111 105 0 7 chr13 10579493 10579645 -91293524 + AluSg/x SINE Alu 154 304 -8 182 83 56 0 chr13 10579764 10579800 -91293369 + (TCTCTG)n Simple_repeat Simple_repeat 5 42 0 352 238 12 0 chr13 10581861 10581941 -91291228 + MER5B DNA MER1_type 95 175 -3 311 292 75 31 chr13 10582015 10582176 -91290993 + MER5A DNA MER1_type 1 179 -10 471 220 0 0 chr13 10582226 10582326 -91290843 - MER5A DNA MER1_type -79 110 11 321 298 71 30 chr13 10582560 10582728 -91290441 - MER5B DNA MER1_type -3 175 1 809 164 0 8 chr13 10583246 10583403 -91289766 + FLAM_C SINE Alu 1 156 0 1379 161 6 129 chr13 10583797 10584138 -91289031 - AluJo SINE Alu -1 301 3 180 322 133 38 chr13 10584189 10584400 -91288769 - MIR SINE MIR -12 250 20 2665 144 31 5 chr13 10584551 10584968 -91288201 + MSTA LTR MaLR 1 428 0 696 106 106 0 chr13 10585280 10585393 -91287776 - L1MD3 LINE L1 -1 7994 7870 2344 87 0 10 chr13 10585416 10585714 -91287455 - AluSx SINE Alu -17 295 1 269 303 34 0 chr13 10588591 10588680 -91284489 + MIR3 SINE MIR 110 201 -7 2498 185 113 16 chr13 10589054 10589675 -91283494 - L1MC3 LINE L1 -1 7784 7104 26 0 0 0 chr13 10590105 10590131 -91283038 + AT_rich Low_complexity Low_complexity 1 26 0 401 289 79 9 chr13 10591244 10591358 -91281811 - L2 LINE L2 0 3272 3151 344 277 105 45 chr13 10591427 10591694 -91281475 - L1ME4a LINE L1 -248 5873 5591 404 247 34 102 chr13 10593355 10593590 -91279579 - MER112 DNA MER1_type -14 246 28 1908 146 21 4 chr13 10594903 10595211 -91277958 - AluSx SINE Alu 0 313 1 261 272 143 47 chr13 10597094 10597373 -91275796 - MLT1J LTR MaLR -95 416 111 21 0 0 0 chr13 10597822 10597843 -91275326 + AT_rich Low_complexity Low_complexity 1 21 0 285 256 96 24 chr13 10598523 10598648 -91274521 - MLT1J LTR MaLR -24 487 354 622 233 23 79 chr13 10598682 10598948 -91274221 - MLT1J LTR MaLR -250 261 11 368 266 44 35 chr13 10599475 10599678 -91273491 - L1MC4a LINE L1 -1751 6057 5853 1355 155 10 113 chr13 10600240 10600549 -91272620 - AluJo SINE Alu -1 311 35 213 222 0 0 chr13 10605225 10605270 -91267899 - MIR SINE MIR -63 145 101 190 316 86 70 chr13 10606355 10606542 -91266627 + L2 LINE L2 3045 3234 -38 738 111 23 32 chr13 10606555 10606776 -91266393 + (TGGA)n Simple_repeat Simple_repeat 1 219 0 238 350 71 29 chr13 10606795 10606935 -91266234 + MIR SINE MIR 2 147 -115 182 88 0 29 chr13 10619626 10619660 -91253509 + (TG)n Simple_repeat Simple_repeat 2 34 0 412 242 83 25 chr13 10624312 10624432 -91248737 + L2 LINE L2 3136 3262 -10 348 318 7 7 chr13 10624844 10624998 -91248171 + (TG)n Simple_repeat Simple_repeat 1 154 0 359 262 153 15 chr13 10625566 10625735 -91247434 - MER112 DNA MER1_type -2 258 55 387 0 0 0 chr13 10625735 10625778 -91247391 + (TG)n Simple_repeat Simple_repeat 2 44 0 359 262 153 15 chr13 10625778 10625810 -91247359 - MER112 DNA MER1_type -205 55 29 1022 176 11 0 chr13 10627391 10627579 -91245590 + MLT1A1 LTR MaLR 1 190 -175 674 205 94 0 chr13 10628633 10628804 -91244365 + MER53 DNA DNA 3 189 0 203 326 68 30 chr13 10629789 10629921 -91243248 - MIR SINE MIR -50 212 76 211 291 109 18 chr13 10630664 10630817 -91242352 - MIR3 SINE MIR -39 169 1 544 304 52 5 chr13 10630823 10631017 -91242152 + Charlie8 DNA MER1_type 1 203 -2214 1932 93 54 32 chr13 10631946 10632259 -91240910 - THE1B LTR MaLR -44 320 1 2159 108 0 10 chr13 10633539 10633835 -91239334 + AluY SINE Alu 1 293 -18 306 0 0 0 chr13 10633878 10633912 -91239257 + (TG)n Simple_repeat Simple_repeat 2 35 0 957 152 45 15 chr13 10634192 10634219 -91238950 + Tigger3(Golem) DNA MER2_type 2478 2503 -525 2556 46 7 10 chr13 10634219 10634522 -91238647 + AluY SINE Alu 3 304 -7 957 152 45 15 chr13 10634522 10634692 -91238477 + Tigger3(Golem) DNA MER2_type 2503 2681 -347 262 171 51 62 chr13 10634694 10634870 -91238299 + (CACTT)n Simple_repeat Simple_repeat 3 176 0 * 402 167 75 46 chr13 10634775 10634949 -91238220 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1974 130 56 37 chr13 10634976 10635352 -91237817 + Tigger3(Golem) DNA MER2_type 2646 3028 -1 3074 205 94 16 chr13 10635845 10635970 -91237199 - Charlie1 DNA MER1_type 0 2761 2647 1904 171 0 10 chr13 10635970 10636274 -91236895 + AluJb SINE Alu 1 301 -11 3074 205 94 16 chr13 10636274 10636957 -91236212 - Charlie1 DNA MER1_type -114 2647 1890 378 277 91 41 chr13 10637159 10637264 -91235905 + L1MC4 LINE L1 7709 7807 -235 2909 3 0 0 chr13 10637264 10637570 -91235599 - AluYa5 SINE Alu -5 306 1 378 277 91 41 chr13 10637570 10637782 -91235387 + L1MC4 LINE L1 7807 8042 0 181 255 248 60 chr13 10638873 10639022 -91234147 - L3 LINE CR1 -500 1077 901 3257 113 51 2 chr13 10639734 10640221 -91232948 - MER9 LTR ERVK 0 511 1 399 21 0 0 chr13 10640376 10640424 -91232745 + (TG)n Simple_repeat Simple_repeat 2 49 0 234 298 24 12 chr13 10641339 10641423 -91231746 + L2 LINE L2 3184 3268 -4 1047 223 27 29 chr13 10641816 10642129 -91231040 - MLT1E LTR MaLR -46 547 272 256 275 38 0 chr13 10642108 10642188 -91230981 - MLT1E1 LTR MaLR -253 401 319 * 2029 138 14 7 chr13 10642684 10642981 -91230188 + AluSx SINE Alu 1 299 -13 250 182 0 0 chr13 10644602 10644646 -91228523 - MER116 DNA Mariner -36 44 1 337 374 46 10 chr13 10645567 10645762 -91227407 + MIR SINE MIR 2 203 -59 207 0 0 0 chr13 10646598 10646621 -91226548 + (ATAGG)n Simple_repeat Simple_repeat 3 25 0 263 286 41 20 chr13 10647106 10647204 -91225965 - MIR SINE MIR -46 216 117 377 250 11 11 chr13 10648017 10648105 -91225064 - MER5B DNA MER1_type -90 88 1 220 276 11 65 chr13 10648770 10648955 -91224214 + C-rich Low_complexity Low_complexity 3 177 0 * 256 262 0 71 chr13 10648835 10649003 -91224166 + CT-rich Low_complexity Low_complexity 3 158 0 243 297 68 51 chr13 10649525 10649643 -91223526 + L2 LINE L2 3145 3264 -8 1265 168 39 13 chr13 10649951 10650183 -91222986 - AluJb SINE Alu -16 296 59 2417 76 3 0 chr13 10650183 10650474 -91222695 - AluSq SINE Alu -21 292 1 23 54 0 0 chr13 10650589 10650626 -91222543 + AT_rich Low_complexity Low_complexity 1 37 0 434 300 82 39 chr13 10650738 10650995 -91222174 - L1ME4a LINE L1 -216 5905 5638 2630 48 0 10 chr13 10653479 10653789 -91219380 - AluY SINE Alu -2 309 3 2299 119 58 5 chr13 10653795 10654206 -91218963 - Tigger3b DNA MER2_type -528 703 271 306 190 139 13 chr13 10654207 10654286 -91218883 - L1MC4 LINE L1 -1342 6700 6612 1324 205 40 0 chr13 10654311 10654584 -91218585 - Tigger3b DNA MER2_type -947 284 1 23 33 0 0 chr13 10654726 10654756 -91218413 + AT_rich Low_complexity Low_complexity 1 30 0 398 270 108 9 chr13 10654810 10654921 -91218248 - L2 LINE L2 0 3313 3192 547 216 22 36 chr13 10656068 10656134 -91217035 - L1MA8 LINE L1 -5 6286 6221 1400 168 17 9 chr13 10656134 10656366 -91216803 + MER46A DNA MER2_type 1 234 -2 547 216 22 36 chr13 10656366 10656438 -91216731 - L1MA8 LINE L1 -70 6221 6150 890 190 123 0 chr13 10656895 10657090 -91216079 + MER20 DNA MER1_type 1 219 0 280 257 6 109 chr13 10658051 10658226 -91214943 - MIR SINE MIR 0 262 106 279 318 91 11 chr13 10658433 10658608 -91214561 + MIR SINE MIR 20 206 -56 626 146 16 24 chr13 10659841 10659964 -91213205 + L1MB3 LINE L1 6061 6182 -1 2626 187 64 3 chr13 10659989 10660567 -91212602 + L1MB7 LINE L1 5572 6184 0 378 219 6 130 chr13 10662417 10662586 -91210583 + MER58C DNA MER1_type 45 192 -23 305 163 33 43 chr13 10663142 10663234 -91209935 + LTR33 LTR ERVL 423 513 -8 209 191 85 0 chr13 10663488 10663535 -91209634 - L2 LINE L2 -8 3264 3214 210 298 95 0 chr13 10663566 10663650 -91209519 - MIR SINE MIR -116 146 55 301 264 103 0 chr13 10664146 10664233 -91208936 + MIR SINE MIR 64 159 -103 1745 152 7 39 chr13 10664342 10664651 -91208518 + AluJo SINE Alu 1 299 -13 363 228 315 0 chr13 10664653 10664780 -91208389 + MIR SINE MIR 92 258 -4 305 138 69 0 chr13 10664896 10664954 -91208215 - MADE1 DNA Mariner 0 80 19 638 148 4 179 chr13 10667380 10667609 -91205560 - MER53 DNA DNA 0 189 1 2343 77 7 3 chr13 10668421 10668721 -91204448 - AluY SINE Alu -10 301 1 1825 192 0 19 chr13 10669783 10670100 -91203069 + AluJo SINE Alu 1 311 -1 2046 113 0 8 chr13 10673141 10673407 -91199762 - AluSx SINE Alu -15 297 34 231 250 109 77 chr13 10673840 10673996 -91199173 - MIR3 SINE MIR -21 187 27 347 234 13 0 chr13 10675840 10675917 -91197252 - MIR SINE MIR -74 188 111 220 282 111 34 chr13 10676243 10676360 -91196809 - L2 LINE L2 -1 3271 3146 295 233 0 0 chr13 10676428 10676488 -91196681 + MER5A DNA MER1_type 47 106 -83 2018 86 0 107 chr13 10677899 10678236 -91194933 - AluSc SINE Alu -8 301 1 541 224 6 73 chr13 10679185 10679364 -91193805 - MER112 DNA MER1_type -91 169 3 222 217 319 0 chr13 10680129 10680198 -91192971 - L2 LINE L2 -6 3307 3217 307 259 159 45 chr13 10680200 10680401 -91192768 - L1ME4a LINE L1 -139 5982 5759 375 204 41 0 chr13 10681761 10681859 -91191310 + L1ME4a LINE L1 6011 6112 -9 1019 202 19 90 chr13 10681945 10682284 -91190885 + L1MC4 LINE L1 7686 7999 -43 2143 132 3 6 chr13 10682284 10682595 -91190574 - AluSx SINE Alu -2 310 1 1019 202 19 90 chr13 10682595 10682622 -91190547 + L1MC4 LINE L1 7999 8026 -16 416 263 191 26 chr13 10683579 10683773 -91189396 + MIR SINE MIR 37 262 0 330 169 0 0 chr13 10684158 10684223 -91188946 + (CA)n Simple_repeat Simple_repeat 2 66 0 1624 178 3 24 chr13 10684612 10684904 -91188265 + AluJb SINE Alu 1 286 -26 334 236 36 45 chr13 10684959 10685069 -91188100 - MIR SINE MIR -1 261 153 359 247 226 14 chr13 10686963 10687109 -91186060 + L2 LINE L2 2366 2542 -772 25 90 0 0 chr13 10689081 10689148 -91184021 + GC_rich Low_complexity Low_complexity 1 67 0 213 94 0 0 chr13 10689288 10689320 -91183849 + (CGGGG)n Simple_repeat Simple_repeat 1 32 0 205 78 0 78 chr13 10689480 10689531 -91183638 + (CCCCCG)n Simple_repeat Simple_repeat 1 47 0 628 140 7 127 chr13 10689959 10690109 -91183060 - FLAM_C SINE Alu -1 132 1 1355 224 11 14 chr13 10690648 10690934 -91182235 - AluJo SINE Alu -15 297 13 923 198 6 0 chr13 10690997 10691159 -91182010 - FRAM SINE Alu -3 163 1 232 158 18 35 chr13 10691161 10691218 -91181951 + MIR SINE MIR 201 256 -6 2286 104 3 0 chr13 10691234 10691542 -91181627 + AluSc SINE Alu 1 309 0 226 329 35 12 chr13 10691711 10691796 -91181373 + MIR SINE MIR 31 117 -145 183 184 0 0 chr13 10691863 10691901 -91181268 + CT-rich Low_complexity Low_complexity 2 39 0 297 288 132 51 chr13 10692460 10692636 -91180533 + MIR SINE MIR 20 207 -55 2057 164 31 31 chr13 10692665 10693087 -91180082 - MSTB1 LTR MaLR -3 429 8 5279 171 61 30 chr13 10693100 10693571 -91179598 + L1MC2 LINE L1 4829 5284 -1060 2016 129 0 3 chr13 10693571 10693892 -91179277 + AluSq SINE Alu 1 320 0 5279 171 61 30 chr13 10693892 10694695 -91178474 + L1MC2 LINE L1 5284 6165 -179 2216 113 7 0 chr13 10694695 10694995 -91178174 + AluSq SINE Alu 1 302 -11 5279 171 61 30 chr13 10694995 10695170 -91177999 + L1MC2 LINE L1 6165 6333 -11 562 325 106 17 chr13 10695302 10695539 -91177630 + MIR SINE MIR 4 261 -1 183 274 85 66 chr13 10696144 10696250 -91176919 + MIR SINE MIR 18 125 -83 1841 210 77 64 chr13 10696615 10697162 -91176007 - MLT2B3 LTR ERVL 0 554 1 399 283 20 56 chr13 10697170 10697302 -91175867 + L1ME4a LINE L1 5652 5776 -345 2857 185 43 2 chr13 10697302 10697837 -91175332 - MER41D LTR ERV1 0 557 1 399 283 20 56 chr13 10697837 10697902 -91175267 + L1ME4a LINE L1 5776 5842 -279 225 250 10 40 chr13 10697975 10698075 -91175094 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 390 169 0 0 chr13 10698429 10698494 -91174675 + Tigger2 DNA MER2_type 3 67 -2651 2579 138 28 2 chr13 10698496 10698923 -91174246 + Tigger2 DNA MER2_type 2280 2717 -1 1990 186 5 25 chr13 10699319 10699717 -91173452 + MLT1B LTR MaLR 1 390 0 352 335 89 15 chr13 10700150 10700329 -91172840 + MIR SINE MIR 4 192 -70 222 228 18 18 chr13 10700364 10700421 -91172748 + CT-rich Low_complexity Low_complexity 5 61 0 369 267 160 0 chr13 10701053 10701184 -91171985 + MIR SINE MIR 85 236 -26 805 184 173 0 chr13 10701505 10701690 -91171479 - MER20 DNA MER1_type -1 218 2 465 244 0 0 chr13 10702155 10702241 -91170928 - FRAM/FAM SINE Alu -91 85 1 813 261 5 0 chr13 10703020 10703208 -91169961 + MIR SINE MIR 71 259 -3 1032 163 6 17 chr13 10703209 10703387 -91169782 + AluJo SINE Alu 125 300 -12 586 231 75 59 chr13 10703739 10703994 -91169175 + MLT1K LTR MaLR 330 588 0 268 308 135 10 chr13 10704063 10704167 -91169002 + L2 LINE L2 3132 3248 -24 2343 106 0 0 chr13 10704351 10704654 -91168515 - AluSg SINE Alu -7 303 1 2065 122 3 7 chr13 10706083 10706379 -91166790 - AluSx SINE Alu 0 312 18 222 338 62 28 chr13 10707781 10707926 -91165243 - MIR SINE MIR -46 216 67 723 248 100 34 chr13 10708011 10708482 -91164687 + L1MDa LINE L1 1569 2070 -4470 3614 94 31 2 chr13 10708677 10709264 -91163905 + L1PB1 LINE L1 1540 2143 -4720 13807 181 14 3 chr13 10709270 10713466 -91159703 + L1PB1 LINE L1 2567 6866 -1 408 308 165 45 chr13 10713524 10714141 -91159028 - L1M4 LINE L1 -964 5182 4492 579 300 99 32 chr13 10714219 10714815 -91158354 + L1MEd LINE L1 325 960 -5159 4046 145 26 22 chr13 10714815 10715051 -91158118 + L1MB3 LINE L1 5450 5684 -499 3075 171 45 15 chr13 10715051 10715494 -91157675 - MER7C DNA MER2_type -2426 602 136 2188 91 3 3 chr13 10715494 10715781 -91157388 + AluSc SINE Alu 1 287 -22 3075 171 45 15 chr13 10715781 10715921 -91157248 - MER7C DNA MER2_type -2892 136 2 4046 145 26 22 chr13 10715921 10716408 -91156761 + L1MB3 LINE L1 5684 6176 -7 201 108 0 0 chr13 10716414 10716451 -91156718 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 242 242 16 16 chr13 10716905 10716967 -91156202 + L1MCa LINE L1 561 622 -5497 302 272 19 71 chr13 10717122 10717483 -91155686 + L1MCa LINE L1 820 1177 -5125 1400 164 10 103 chr13 10717483 10717794 -91155375 + AluJo SINE Alu 1 282 -30 302 272 19 71 chr13 10717794 10718023 -91155146 + L1MCa LINE L1 1177 1416 -4886 238 61 0 0 chr13 10718154 10718187 -91154982 + L1M1 LINE L1 2882 2914 -4651 715 206 0 0 chr13 10718194 10718325 -91154844 + FLAM_A SINE Alu 3 133 0 22398 177 17 38 chr13 10718362 10722743 -91150426 + L1PA11 LINE L1 1 5601 -2011 332 90 11 0 chr13 10722743 10722803 -91150366 + Alu SINE Alu 251 300 0 22398 177 17 38 chr13 10722803 10724088 -91149081 + L1PA11 LINE L1 5601 6911 -701 28919 112 14 62 chr13 10724136 10726682 -91146487 - L1PA7 LINE L1 -13 6141 3475 2180 96 0 46 chr13 10726682 10727005 -91146164 - AluY SINE Alu -3 308 1 28919 112 14 62 chr13 10727005 10730898 -91142271 - L1PA7 LINE L1 -2679 3475 20 4707 113 31 3 chr13 10730898 10731606 -91141563 + L1PA11 LINE L1 6883 7610 -2 361 249 0 60 chr13 10731619 10731804 -91141365 + L1MCa LINE L1 1473 1698 -4486 604 207 8 0 chr13 10732039 10732160 -91141009 - AluJb SINE Alu -19 293 172 1817 275 40 52 chr13 10732193 10732971 -91140198 + L1MCa LINE L1 2263 3049 -3080 2334 94 0 0 chr13 10732971 10733259 -91139910 - AluSc SINE Alu -21 288 1 1817 275 40 52 chr13 10733259 10733564 -91139605 + L1MCa LINE L1 3049 3333 -2796 1897 120 10 19 chr13 10733564 10733873 -91139296 - L1PA13 LINE L1 -7 6156 5851 1817 275 40 52 chr13 10733873 10734003 -91139166 + L1MCa LINE L1 3333 3463 -2666 313 250 0 0 chr13 10734124 10734204 -91138965 - MER116 DNA Mariner 0 80 1 1854 204 89 27 chr13 10734312 10734876 -91138293 - LTR48B LTR ERV1 -45 599 1 745 267 70 56 chr13 10734909 10735330 -91137839 + L1MCa LINE L1 3829 4257 -1872 41013 31 21 1 chr13 10735498 10741498 -91131671 - L1HS LINE L1 0 6155 32 389 216 10 0 chr13 10741504 10741601 -91131568 - L1M4 LINE L1 -3110 3036 2939 200 128 26 0 chr13 10741616 10741655 -91131514 + (TA)n Simple_repeat Simple_repeat 2 41 0 198 0 0 0 chr13 10741751 10741773 -91131396 + (TG)n Simple_repeat Simple_repeat 2 23 0 4402 220 114 5 chr13 10741774 10743236 -91129933 - L1MEc LINE L1 -1902 4313 2692 554 97 87 5 chr13 10743238 10743255 -91129914 + (TA)n Simple_repeat Simple_repeat 1 15 -803 27 0 0 0 chr13 10743255 10743282 -91129887 + AT_rich Low_complexity Low_complexity 1 27 0 2131 130 3 0 chr13 10743282 10743574 -91129595 + AluSq SINE Alu 1 293 -20 554 97 87 5 chr13 10743574 10743994 -91129175 + (TA)n Simple_repeat Simple_repeat 14 818 0 3181 168 50 137 chr13 10744107 10744954 -91128215 + MER21A LTR ERV1 72 844 -87 582 236 0 30 chr13 10744999 10745164 -91128005 - L1MEc LINE L1 -3522 2693 2534 1349 229 33 54 chr13 10745164 10745539 -91127630 - MLT1A1 LTR MaLR -2 424 1 229 188 21 0 chr13 10745539 10745587 -91127582 - L1MEc LINE L1 -3687 2528 2480 1509 191 7 28 chr13 10745611 10745893 -91127276 - AluJo SINE Alu -36 276 1 1419 301 62 33 chr13 10745902 10746830 -91126339 - L1MEc LINE L1 -3873 2523 1569 1139 121 24 0 chr13 10746855 10747021 -91126148 + AluSx SINE Alu 1 170 -142 324 133 0 0 chr13 10747021 10747066 -91126103 - Alu SINE Alu -257 45 1 708 282 39 39 chr13 10747066 10747346 -91125823 + L1ME4a LINE L1 5481 5760 -2048 288 230 53 86 chr13 10747603 10747755 -91125414 + L1ME4a LINE L1 5879 6025 -96 3811 136 11 0 chr13 10748280 10748801 -91124368 + MER1A DNA MER1_type 1 527 0 684 239 0 8 chr13 10749643 10749777 -91123392 + FLAM_A SINE Alu 1 133 0 1983 152 173 14 chr13 10749910 10750279 -91122890 - MSTA LTR MaLR 0 428 1 1291 198 57 25 chr13 10750339 10750622 -91122547 - AluSx SINE Alu -20 292 1 2050 123 0 11 chr13 10750763 10751125 -91122044 - AluSq SINE Alu 0 359 1 576 96 0 0 chr13 10751163 10751246 -91121923 - L1PB3 LINE L1 -3 6151 6069 237 256 19 42 chr13 10751359 10751463 -91121706 + L1MC4a LINE L1 5519 5621 -549 4985 80 12 11 chr13 10752059 10752708 -91120461 - L1PA11 LINE L1 0 6174 5525 371 279 66 56 chr13 10753295 10753405 -91119764 + L1MC4a LINE L1 5612 5719 -2089 1985 143 7 7 chr13 10753405 10753876 -91119293 + AluSx SINE Alu 1 312 0 371 279 66 56 chr13 10753876 10754052 -91119117 + L1MC4a LINE L1 5719 5901 -1907 5216 44 2 2 chr13 10754052 10754643 -91118526 - LTR10C LTR ERV1 0 591 1 575 260 105 57 chr13 10754934 10755372 -91117797 + L1MC4a LINE L1 3540 3998 -2148 234 269 92 8 chr13 10755615 10755745 -91117424 + LTR33 LTR ERVL 305 445 -76 2998 209 28 16 chr13 10755751 10756044 -91117125 + MER82 DNA MER2_type 7 295 -358 5885 73 27 7 chr13 10756044 10756795 -91116374 + MER4E LTR ERV1 1 766 0 2998 209 28 16 chr13 10756795 10757139 -91116030 + MER82 DNA MER2_type 295 652 -1 953 284 118 34 chr13 10757209 10757585 -91115584 + L1MC4a LINE L1 3998 4341 -1805 2926 10 0 0 chr13 10757585 10757897 -91115272 + AluYb8 SINE Alu 1 312 -6 953 284 118 34 chr13 10757897 10758373 -91114796 + L1MC4a LINE L1 4341 4922 -1224 940 290 102 19 chr13 10758382 10758998 -91114171 + L1MC4a LINE L1 5215 5403 -743 34837 87 8 54 chr13 10759143 10765590 -91107579 + L1PA3 LINE L1 12 6155 0 7208 56 24 0 chr13 10765606 10767262 -91105907 + L1PA7 LINE L1 4480 6154 0 1055 117 32 0 chr13 10767365 10767519 -91105650 - L1MB2 LINE L1 -3 6168 6010 2232 99 0 0 chr13 10767524 10767807 -91105362 + AluSx SINE Alu 1 283 -29 210 128 0 0 chr13 10767809 10767848 -91105321 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1872 138 43 98 chr13 10767857 10768254 -91104915 - L1MB2 LINE L1 -153 6018 5644 1398 179 46 21 chr13 10768254 10768752 -91104417 - MER44D DNA MER2_type -1 604 14 380 145 16 0 chr13 10768753 10768815 -91104354 - L1MB2 LINE L1 -660 5640 5578 360 0 0 0 chr13 10768815 10768855 -91104314 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2256 70 0 7 chr13 10768858 10769143 -91104026 - AluY SINE Alu -28 283 1 636 342 8 4 chr13 10769462 10769719 -91103450 + MLT1I LTR MaLR 97 354 -55 1756 147 27 14 chr13 10769723 10769859 -91103310 + AluJb SINE Alu 1 134 -178 2208 115 7 0 chr13 10769859 10770164 -91103005 + AluSx SINE Alu 1 307 -5 1756 147 27 14 chr13 10770164 10770319 -91102850 + AluJb SINE Alu 134 296 -16 290 197 43 86 chr13 10771642 10771759 -91101410 + MIR SINE MIR 45 156 -106 2305 91 0 3 chr13 10772445 10772741 -91100428 - AluSc SINE Alu -14 295 1 303 131 0 33 chr13 10775149 10775210 -91097959 - L1MB5 LINE L1 -1 6173 6115 2017 94 72 0 chr13 10775211 10775487 -91097682 + AluSq SINE Alu 1 296 -17 2292 163 20 13 chr13 10776029 10776422 -91096747 - MER61B LTR ERV1 -29 396 1 223 333 62 0 chr13 10777164 10777260 -91095909 - MER5A DNA MER1_type -50 139 38 337 255 167 23 chr13 10777317 10777503 -91095666 + MIR SINE MIR 32 248 -14 1966 164 56 26 chr13 10777513 10777891 -91095278 - MLT1B LTR MaLR -1 389 1 228 197 66 49 chr13 10779103 10779164 -91094005 - MIR3 SINE MIR -9 199 138 509 243 134 99 chr13 10779253 10779648 -91093521 + MLT1H LTR MaLR 125 533 -16 1237 224 85 54 chr13 10779701 10780147 -91093022 - L1MC4 LINE L1 -692 7350 6891 1154 229 29 7 chr13 10780162 10780441 -91092728 - L1M4 LINE L1 -2376 3770 3486 244 309 34 20 chr13 10780457 10780606 -91092563 - L1M4 LINE L1 -3793 2353 2203 240 254 16 16 chr13 10780823 10780886 -91092283 + L2 LINE L2 3248 3310 -3 1163 231 107 72 chr13 10780898 10781356 -91091813 - MLT1J LTR MaLR -1 510 37 1062 253 118 31 chr13 10781557 10781832 -91091337 - LTR33 LTR ERVL -2 519 187 981 196 12 6 chr13 10781832 10782005 -91091164 - MER45A DNA AcHobo 0 178 5 1062 253 118 31 chr13 10782005 10782187 -91090982 - LTR33 LTR ERVL -334 187 22 510 268 87 0 chr13 10782207 10782345 -91090824 - L2 LINE L2 -556 2758 2609 312 261 90 77 chr13 10782366 10782600 -91090569 + MER112 DNA MER1_type 23 259 -1 320 182 13 52 chr13 10782610 10782687 -91090482 + MLT1D LTR MaLR 6 79 -426 1905 206 22 31 chr13 10782719 10783170 -91089999 + MLT1D LTR MaLR 58 504 -1 661 271 107 64 chr13 10783847 10783996 -91089173 + L1M2 LINE L1 4346 4487 -1709 1443 208 10 20 chr13 10783996 10784294 -91088875 + AluJo SINE Alu 1 295 -17 661 271 107 64 chr13 10784294 10785175 -91087994 + L1M2 LINE L1 4487 5453 -743 872 287 84 6 chr13 10785264 10785585 -91087584 + L1ME3 LINE L1 5484 5829 -333 255 61 0 0 chr13 10785606 10785639 -91087530 + (T)n Simple_repeat Simple_repeat 1 33 0 1703 126 4 0 chr13 10785649 10785879 -91087290 - AluSx SINE Alu -81 231 1 302 268 197 8 chr13 10786498 10786538 -91086631 - MER5A DNA MER1_type -14 175 144 1697 168 40 16 chr13 10786538 10786841 -91086328 + AluJo SINE Alu 3 312 0 302 268 197 8 chr13 10786841 10786927 -91086242 - MER5A DNA MER1_type -45 144 25 200 35 35 0 chr13 10787472 10787501 -91085668 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 236 307 0 20 chr13 10787664 10787765 -91085404 + MIR SINE MIR 44 142 -120 459 217 0 0 chr13 10787765 10787857 -91085312 + MER53 DNA DNA 95 186 -3 462 273 30 0 chr13 10787858 10787990 -91085179 + MIR SINE MIR 108 243 -19 225 302 98 78 chr13 10788001 10788143 -91085026 + L2 LINE L2 2554 2705 -609 2151 116 10 3 chr13 10788143 10788445 -91084724 + AluSx SINE Alu 1 304 -8 225 302 98 78 chr13 10788445 10788547 -91084622 + L2 LINE L2 2705 2803 -511 947 145 0 0 chr13 10788584 10788722 -91084447 - FRAM SINE Alu -21 155 18 269 296 96 0 chr13 10789761 10789876 -91083293 + L2 LINE L2 3137 3262 -10 326 204 133 0 chr13 10790142 10790240 -91082929 + L1ME LINE L1 5707 5817 -304 210 200 43 14 chr13 10790365 10790435 -91082734 + T-rich Low_complexity Low_complexity 2 73 0 902 170 0 0 chr13 10790440 10790599 -91082570 + L1MD3 LINE L1 7831 7989 -6 47 19 0 0 chr13 10790599 10790653 -91082516 + AT_rich Low_complexity Low_complexity 1 54 0 646 271 107 64 chr13 10791041 10791190 -91081979 + L1M2 LINE L1 4346 4487 -1709 1443 208 10 20 chr13 10791190 10791488 -91081681 + AluJo SINE Alu 1 295 -17 646 271 107 64 chr13 10791488 10792368 -91080801 + L1M2 LINE L1 4487 5453 -743 872 287 84 6 chr13 10792457 10792778 -91080391 + L1ME3 LINE L1 5484 5829 -333 264 59 0 0 chr13 10792799 10792833 -91080336 + (T)n Simple_repeat Simple_repeat 1 34 0 1641 135 4 0 chr13 10792842 10793072 -91080097 - AluSx SINE Alu -81 231 1 302 268 197 8 chr13 10793692 10793732 -91079437 - MER5A DNA MER1_type -14 175 144 1697 168 40 16 chr13 10793732 10794035 -91079134 + AluJo SINE Alu 3 312 0 302 268 197 8 chr13 10794035 10794121 -91079048 - MER5A DNA MER1_type -45 144 25 200 35 35 0 chr13 10794666 10794695 -91078474 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 236 307 0 20 chr13 10794858 10794959 -91078210 + MIR SINE MIR 44 142 -120 459 217 0 0 chr13 10794959 10795051 -91078118 + MER53 DNA DNA 95 186 -3 462 273 30 0 chr13 10795052 10795184 -91077985 + MIR SINE MIR 108 243 -19 2245 97 3 3 chr13 10795337 10795627 -91077542 + AluSx SINE Alu 1 290 -22 1177 171 222 10 chr13 10795627 10795687 -91077482 - L1MD2 LINE L1 -150 6209 6163 216 97 0 0 chr13 10795687 10795718 -91077451 + (TG)n Simple_repeat Simple_repeat 2 32 0 1177 171 222 10 chr13 10795718 10795950 -91077219 - L1MD2 LINE L1 -196 6163 5855 22 0 0 0 chr13 10796553 10796575 -91076594 + AT_rich Low_complexity Low_complexity 1 22 0 251 242 0 48 chr13 10797557 10797619 -91075550 - L2 LINE L2 -6 3307 3249 24 0 0 0 chr13 10798025 10798049 -91075120 + AT_rich Low_complexity Low_complexity 1 24 0 183 139 0 0 chr13 10798249 10798285 -91074884 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 936 161 6 36 chr13 10798519 10798687 -91074482 - FRAM SINE Alu -9 167 5 93 26 0 0 chr13 10798787 10798901 -91074268 + AT_rich Low_complexity Low_complexity 1 114 0 2465 173 32 0 chr13 10798903 10799342 -91073827 - L1MD3 LINE L1 0 7995 7543 1150 224 37 39 chr13 10799399 10799882 -91073287 + MLT1F LTR MaLR 10 542 0 403 277 74 43 chr13 10800018 10800249 -91072920 - L1ME4a LINE L1 -194 5927 5690 347 331 60 7 chr13 10800255 10800406 -91072763 + MIR SINE MIR 1 159 -103 1617 135 104 3 chr13 10800426 10800715 -91072454 - L1MB3 LINE L1 -3 6180 5863 256 111 12 49 chr13 10800822 10800903 -91072266 + (TA)n Simple_repeat Simple_repeat 1 78 0 2079 231 10 0 chr13 10800920 10801332 -91071837 + L1PBa LINE L1 1218 1633 -5230 744 198 8 8 chr13 10801303 10801429 -91071740 + L1PB3 LINE L1 1 126 -6078 * 9192 162 40 14 chr13 10801422 10803677 -91069492 + L1PB3 LINE L1 3527 5724 -487 384 119 0 0 chr13 10803677 10803736 -91069433 + (TA)n Simple_repeat Simple_repeat 2 60 0 9192 162 40 14 chr13 10803736 10803762 -91069407 + L1PB3 LINE L1 5724 5748 -463 2359 98 3 0 chr13 10803762 10804068 -91069101 - AluSq SINE Alu -6 307 1 9192 162 40 14 chr13 10804068 10804394 -91068775 + L1PB3 LINE L1 5748 6207 -4 342 233 21 98 chr13 10804409 10804602 -91068567 + L1M4 LINE L1 5152 5329 -817 489 330 80 30 chr13 10805577 10805938 -91067231 - L2 LINE L2 -87 3226 2848 269 311 226 21 chr13 10806576 10806766 -91066403 - MIR SINE MIR -2 260 32 1651 208 81 40 chr13 10807457 10807904 -91065265 + MLT1C LTR MaLR 1 465 -2 2804 187 64 3 chr13 10809432 10810010 -91063159 - L1MB7 LINE L1 0 6184 5572 665 146 16 24 chr13 10810035 10810158 -91063011 - L1MB3 LINE L1 -1 6182 6061 261 318 91 11 chr13 10811390 10811565 -91061604 - MIR SINE MIR -56 206 20 14722 125 4 29 chr13 10811832 10814259 -91058910 + L1P LINE L1 932 3298 -2848 2134 184 8 23 chr13 10814478 10814874 -91058295 - MLT1B LTR MaLR 0 390 1 2796 138 28 2 chr13 10815270 10815697 -91057472 - Tigger2 DNA MER2_type -1 2717 2280 420 169 0 0 chr13 10815699 10815764 -91057405 - Tigger2 DNA MER2_type -2651 67 3 494 309 64 44 chr13 10816191 10816356 -91056813 - L1ME4a LINE L1 -166 5955 5780 3119 185 43 2 chr13 10816356 10816891 -91056278 + MER41D LTR ERV1 1 557 0 494 309 64 44 chr13 10816891 10817023 -91056146 - L1ME4a LINE L1 -341 5780 5652 2089 208 77 64 chr13 10817031 10817578 -91055591 + MLT2B3 LTR ERVL 1 554 0 250 250 29 0 chr13 10817913 10817981 -91055188 - MLT1K LTR MaLR 0 588 519 555 325 106 17 chr13 10818654 10818891 -91054278 - MIR SINE MIR -1 261 4 5796 164 61 30 chr13 10819023 10819198 -91053971 - L1MC2 LINE L1 -11 6333 6165 2214 113 7 0 chr13 10819198 10819498 -91053671 - AluSq SINE Alu -11 302 1 5796 164 61 30 chr13 10819498 10820301 -91052868 - L1MC2 LINE L1 -179 6165 5284 2009 129 0 3 chr13 10820301 10820622 -91052547 - AluSq SINE Alu 0 320 1 5796 164 61 30 chr13 10820622 10821093 -91052076 - L1MC2 LINE L1 -1060 5284 4829 916 228 29 37 chr13 10821106 10821378 -91051791 + MSTB1 LTR MaLR 8 277 -155 257 157 22 45 chr13 10821384 10821473 -91051696 + CT-rich Low_complexity Low_complexity 2 88 0 260 268 36 6 chr13 10821587 10821755 -91051414 + G-rich Low_complexity Low_complexity 2 174 0 1655 281 70 62 chr13 10872950 10873246 -90999923 - L1ME4a LINE L1 -757 5389 5097 1872 128 0 17 chr13 10873246 10873565 -90999604 - AluSx SINE Alu 0 314 1 1655 281 70 62 chr13 10873565 10874980 -90998189 - L1ME4a LINE L1 -1049 5097 3664 242 294 15 15 chr13 10875041 10875109 -90998060 + AluJ/FLAM SINE Alu 7 74 -228 235 280 30 40 chr13 10875689 10875789 -90997380 - MIR SINE MIR -80 128 30 289 370 69 12 chr13 10875798 10875971 -90997198 + MER5A DNA MER1_type 5 187 -2 971 230 9 22 chr13 10876909 10877135 -90996034 + MER97c DNA MER1_type? 5 227 -863 1381 277 40 11 chr13 10877231 10877678 -90995491 - L1MC4 LINE L1 -151 7891 7432 415 195 145 19 chr13 10877679 10877838 -90995331 + MER97a DNA MER1_type? 688 866 -28 1525 94 24 87 chr13 10878812 10879100 -90994069 - L1MA9 LINE L1 -5 6307 6038 24 32 0 0 chr13 10879344 10879375 -90993794 + AT_rich Low_complexity Low_complexity 1 31 0 1813 92 73 4 chr13 10879444 10879717 -90993452 + AluSq SINE Alu 1 292 -21 764 229 23 23 chr13 10879994 10880169 -90993000 - MER5B DNA MER1_type -3 175 1 320 258 151 54 chr13 10881029 10881308 -90991861 + MLT1J LTR MaLR 111 416 -95 1244 160 13 42 chr13 10883141 10883378 -90989791 + AluJo SINE Alu 35 264 -48 245 172 0 78 chr13 10883378 10883442 -90989727 + Alu SINE Alu 120 165 -10 398 281 39 30 chr13 10884014 10884217 -90988952 + L1MC4a LINE L1 5853 6057 -1751 691 241 22 77 chr13 10884736 10885010 -90988159 + MLT1J LTR MaLR 3 261 -250 315 256 96 24 chr13 10885044 10885169 -90988000 + MLT1J LTR MaLR 354 487 -24 2057 198 39 39 chr13 10935660 10936151 -90937018 - L1MD2 LINE L1 -41 7129 6639 1331 165 15 41 chr13 10936151 10936219 -90936950 - Tigger2a DNA MER2_type -2274 444 376 2428 84 0 0 chr13 10936219 10936517 -90936652 - AluY SINE Alu -13 298 1 1331 165 15 41 chr13 10936517 10936714 -90936455 - Tigger2a DNA MER2_type -2342 376 186 548 165 10 10 chr13 10936722 10936825 -90936344 - Tigger2a DNA MER2_type -331 103 1 2923 200 28 7 chr13 10936825 10937631 -90935538 - L1MD2 LINE L1 -530 6640 5816 274 289 90 12 chr13 10937880 10938046 -90935123 - L1ME4a LINE L1 -222 5899 5721 207 0 0 0 chr13 10938624 10938647 -90934522 + (A)n Simple_repeat Simple_repeat 1 23 0 315 0 0 0 chr13 10938898 10938933 -90934236 + (CA)n Simple_repeat Simple_repeat 2 36 0 27 0 0 0 chr13 10942020 10942047 -90931122 + AT_rich Low_complexity Low_complexity 1 27 0 1084 184 53 5 chr13 10942062 10942268 -90930901 + MER20 DNA MER1_type 4 219 0 5825 239 73 9 chr13 10943251 10945172 -90927997 - L1MD2 LINE L1 -1726 5231 3189 6111 219 51 21 chr13 10945211 10947151 -90926018 - L1MD2 LINE L1 -4846 2009 11 327 293 8 24 chr13 10947402 10947525 -90925644 + L1MD2 LINE L1 6229 6349 -10 29 60 0 0 chr13 10947545 10947595 -90925574 + AT_rich Low_complexity Low_complexity 1 50 0 710 276 245 17 chr13 10947740 10948218 -90924951 + L2 LINE L2 1758 2344 -970 861 187 52 30 chr13 10948222 10948452 -90924717 - MLT1C LTR MaLR -227 240 6 270 319 21 14 chr13 10948469 10948613 -90924556 + L2 LINE L2 3150 3294 -19 182 218 0 18 chr13 10949154 10949209 -90923960 + (TG)n Simple_repeat Simple_repeat 1 54 0 538 223 121 0 chr13 10949228 10949385 -90923784 + MER96B DNA MER1_type? 1 176 -241 24 32 0 0 chr13 10949692 10949723 -90923446 + AT_rich Low_complexity Low_complexity 1 31 0 803 276 46 17 chr13 10949764 10950003 -90923166 + L2 LINE L2 2147 2392 -922 1645 156 125 3 chr13 10950310 10950631 -90922538 + MLT1A1 LTR MaLR 5 364 -1 27 0 0 0 chr13 10951221 10951248 -90921921 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 10953023 10953046 -90920123 + AT_rich Low_complexity Low_complexity 1 23 0 189 229 42 0 chr13 10954074 10954122 -90919047 + L2 LINE L2 3264 3313 0 249 236 18 0 chr13 10954196 10954251 -90918918 - MER45 DNA AcHobo -9 1572 1517 24 0 0 0 chr13 10954491 10954515 -90918654 + AT_rich Low_complexity Low_complexity 1 24 0 444 353 18 0 chr13 10954795 10954962 -90918207 - MIR3 SINE MIR -5 203 34 1870 254 36 14 chr13 10955017 10955510 -90917659 + MLT1J LTR MaLR 5 508 -3 249 33 0 0 chr13 10955931 10955961 -90917208 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr13 10957721 10957743 -90915426 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr13 10958184 10958214 -90914955 + (CA)n Simple_repeat Simple_repeat 1 30 0 1210 161 60 0 chr13 10959227 10959445 -90913724 - MER46A DNA MER2_type -5 231 1 23 0 0 0 chr13 10959656 10959679 -90913490 + AT_rich Low_complexity Low_complexity 1 23 0 2406 71 0 3 chr13 10959712 10960009 -90913160 - AluY SINE Alu -15 296 1 2085 204 12 66 chr13 10960985 10961564 -90911605 - LTR55 LTR ERV 0 548 1 227 219 68 137 chr13 10961769 10961915 -90911254 - MER5A DNA MER1_type -12 177 42 * 295 340 34 25 chr13 10961799 10961935 -90911234 + MER5A DNA MER1_type 44 175 -3 3519 227 52 20 chr13 10962423 10963685 -90909484 - L1M4 LINE L1 -2734 3648 2346 1468 219 0 24 chr13 10963717 10964014 -90909155 - AluJb SINE Alu -22 290 1 2080 234 49 24 chr13 10964152 10964810 -90908359 - L1M4 LINE L1 -4644 1740 1067 1452 141 25 7 chr13 10965005 10965288 -90907881 + MSTB1 LTR MaLR 145 432 0 849 249 186 16 chr13 10965993 10966374 -90906795 - L2 LINE L2 0 3313 2868 2278 59 3 3 chr13 10966494 10966780 -90906389 - AluY SINE Alu -25 286 1 5739 118 15 3 chr13 10966782 10968312 -90904857 - L1PA11 LINE L1 -267 5907 4360 3443 211 29 17 chr13 10968311 10969199 -90903970 - L1P LINE L1 -749 5397 4499 * 1511 230 15 0 chr13 10969397 10969789 -90903380 - L1M4 LINE L1 -1042 5340 4943 * 2425 237 38 4 chr13 10969786 10970576 -90902593 - L1M4c LINE L1 -2904 3478 2662 2039 112 49 0 chr13 10970592 10970879 -90902290 - AluSq SINE Alu -12 301 1 1324 181 23 15 chr13 10970937 10971196 -90901973 + Tigger7 DNA MER2_type 1 261 -472 388 177 0 0 chr13 10971209 10971271 -90901898 + Tigger7 DNA MER2_type 2425 2486 -1 4904 117 30 18 chr13 10971273 10972277 -90900892 - L1M4c LINE L1 -3748 2634 1616 3693 195 65 27 chr13 10972277 10973098 -90900071 + MER21B LTR ERV1 1 852 -11 1951 145 60 32 chr13 10973118 10973600 -90899569 - L1M4c LINE L1 -4652 1730 1182 1313 121 5 53 chr13 10973603 10973810 -90899359 - AluSg/x SINE Alu -5 307 111 2762 177 32 18 chr13 10973833 10974392 -90898777 - L1M4c LINE L1 -5798 586 20 284 167 69 0 chr13 10974412 10974514 -90898655 + (TA)n Simple_repeat Simple_repeat 1 109 0 650 197 48 0 chr13 10974587 10974734 -90898435 + L1MB8 LINE L1 6016 6169 -9 369 179 16 190 chr13 10975050 10975234 -90897935 - MIR SINE MIR -7 255 104 216 242 0 32 chr13 10976983 10977045 -90896124 + GA-rich Low_complexity Low_complexity 3 62 0 279 313 31 0 chr13 10977627 10977723 -90895446 - MIR3 SINE MIR -25 183 85 1420 219 64 75 chr13 10977826 10978374 -90894795 + MLT1F1 LTR MaLR 1 567 0 3870 199 12 8 chr13 10978601 10979491 -90893678 + L1 LINE L1 3543 4436 -1710 313 276 73 83 chr13 10979789 10980198 -90892971 - L1ME LINE L1 -454 5667 5263 1379 206 33 23 chr13 10980198 10980504 -90892665 + MLT2B1 LTR ERVL 1 309 -211 290 282 112 16 chr13 10981176 10981364 -90891805 - MIR3 SINE MIR 0 208 3 274 315 62 51 chr13 10981713 10981891 -90891278 + MIR3 SINE MIR 27 206 -2 2539 185 43 21 chr13 10983140 10983674 -90889495 + MER44D DNA MER2_type 1 601 -4 2432 141 29 14 chr13 10985574 10985992 -90887177 - MSTA LTR MaLR -4 424 1 692 226 100 0 chr13 10986150 10986340 -90886829 - MER3 DNA MER1_type 0 209 1 201 363 79 25 chr13 10986720 10986960 -90886209 + L2 LINE L2 1172 1424 -1890 272 273 56 56 chr13 10987536 10987679 -90885490 - MIR3 SINE MIR -5 203 61 799 215 30 80 chr13 10988893 10989130 -90884039 - MIR SINE MIR -26 236 12 1575 129 64 10 chr13 10989148 10989298 -90883871 + L1MA9 LINE L1 6002 6142 -170 189 107 0 0 chr13 10989298 10989326 -90883843 + (CA)n Simple_repeat Simple_repeat 1 28 0 1575 129 64 10 chr13 10989326 10989470 -90883699 + L1MA9 LINE L1 6142 6312 0 26 30 0 0 chr13 10989508 10989541 -90883628 + AT_rich Low_complexity Low_complexity 1 33 0 266 217 6 93 chr13 10989579 10989740 -90883429 - L1MC5 LINE L1 -51 7910 7764 283 125 62 0 chr13 10990733 10990781 -90882388 - U2 snRNA snRNA -137 51 1 213 336 42 17 chr13 10991245 10991364 -90881805 - L2 LINE L2 -32 3281 3160 1951 126 29 0 chr13 10991935 10992213 -90880956 + AluSg1 SINE Alu 1 286 -23 195 402 52 35 chr13 10992229 10992577 -90880592 - L2 LINE L2 -849 2465 2112 1314 168 17 4 chr13 10993368 10993600 -90879569 - MER46A DNA MER2_type 0 236 2 236 315 121 6 chr13 10993953 10994118 -90879051 + L3 LINE CR1 1298 1481 -96 344 211 158 0 chr13 10994262 10994357 -90878812 + MIR3 SINE MIR 88 197 -11 2835 182 15 26 chr13 10994786 10995389 -90877780 + MER7C DNA MER2_type 6 601 -1 21 0 0 0 chr13 10997829 10997850 -90875319 + AT_rich Low_complexity Low_complexity 1 21 0 320 313 47 16 chr13 10998337 10998465 -90874704 + MIR SINE MIR 23 154 -108 282 250 129 43 chr13 11000092 11000232 -90872937 + MIR SINE MIR 97 248 -14 289 271 56 9 chr13 11000251 11000358 -90872811 + L1ME4a LINE L1 6010 6121 0 216 306 0 14 chr13 11000750 11000822 -90872347 + MIR SINE MIR 2 72 -190 490 258 107 56 chr13 11001044 11001196 -90871973 - L2 LINE L2 -5 3308 3165 2136 121 0 0 chr13 11001196 11001506 -90871663 + AluSc SINE Alu 1 310 0 490 258 107 56 chr13 11001506 11001923 -90871246 - L2 LINE L2 -148 3165 2708 519 39 65 0 chr13 11002479 11002556 -90870613 + L1MA4A LINE L1 6219 6300 -3 244 257 72 26 chr13 11003388 11003505 -90869664 - HAL1b LINE L1 -19 6102 1219 1415 239 19 38 chr13 11004423 11004791 -90868378 - MLT2C1 LTR ERVL -5 392 32 290 209 15 0 chr13 11004787 11004854 -90868315 - MLT2C1 LTR ERVL -324 73 6 * 624 273 32 14 chr13 11005142 11005358 -90867811 - MIR SINE MIR -10 252 33 1516 113 45 9 chr13 11005377 11005599 -90867570 + MER30 DNA MER1_type 1 230 0 315 130 145 0 chr13 11007007 11007076 -90866093 - L1MB3 LINE L1 -1 6182 6104 3914 163 9 17 chr13 11007184 11007876 -90865293 - L1MB3 LINE L1 -42 6141 5456 256 263 0 0 chr13 11007924 11008000 -90865169 + (TTATA)n Simple_repeat Simple_repeat 2 77 0 249 83 0 0 chr13 11008519 11008555 -90864614 + (TG)n Simple_repeat Simple_repeat 2 37 0 1800 140 37 0 chr13 11008555 11008826 -90864343 - AluSx SINE Alu -27 285 5 249 281 16 0 chr13 11009251 11009315 -90863854 - L2 LINE L2 -5 3267 3203 2723 124 11 0 chr13 11009635 11010006 -90863163 + THE1C LTR MaLR 1 375 0 1646 209 14 3 chr13 11010183 11010538 -90862631 + L1 LINE L1 4063 4421 -1725 2301 117 0 0 chr13 11010563 11010863 -90862306 - AluSc SINE Alu -9 300 1 1143 184 33 95 chr13 11010901 11011237 -90861932 + LTR52 LTR ERVL 33 347 -74 2492 196 30 46 chr13 11011243 11011959 -90861210 - LTR27 LTR ERV1 0 1736 1 382 200 27 0 chr13 11011959 11012030 -90861139 + LTR52 LTR ERVL 349 421 0 2130 222 80 61 chr13 11012037 11012690 -90860479 + LTR52-int LTR ERVL 12 676 -2880 342 169 31 0 chr13 11012722 11012787 -90860382 - MSTB LTR MaLR 0 426 360 1839 309 18 16 chr13 11012794 11013405 -90859764 + L1PA13 LINE L1 1 612 -6175 5596 226 28 13 chr13 11013642 11015947 -90857222 + L1PA13 LINE L1 1330 3688 -3109 2285 99 0 3 chr13 11015947 11016241 -90856928 - AluY SINE Alu -18 293 1 5596 226 28 13 chr13 11016241 11016304 -90856865 + L1PA13 LINE L1 3688 3749 -3048 315 145 48 0 chr13 11016299 11016361 -90856808 + L1 LINE L1 4239 4303 -2494 * 270 149 0 0 chr13 11016373 11016420 -90856749 + L1 LINE L1 4604 4650 -1496 6012 180 20 1 chr13 11016423 11017592 -90855577 + L1 LINE L1 4309 5500 -1297 6029 134 11 2 chr13 11017592 11018739 -90854430 + L1PA16 LINE L1 5000 6164 -2 1954 161 42 17 chr13 11018764 11019125 -90854044 - MSTB LTR MaLR -56 370 1 1994 138 6 32 chr13 11019169 11019481 -90853688 + AluSx SINE Alu 1 304 -8 186 133 0 0 chr13 11019481 11019511 -90853658 + (GGGGA)n Simple_repeat Simple_repeat 1 30 0 554 165 21 0 chr13 11019518 11019615 -90853554 + LTR52-int LTR ERVL 842 940 -2616 3975 199 64 78 chr13 11019722 11020766 -90852403 + LTR52-int LTR ERVL 1069 2098 -3587 4007 231 63 56 chr13 11020938 11021679 -90851490 + LTR52-int LTR ERVL 2251 3003 -553 1752 216 65 3 chr13 11021679 11022030 -90851139 - MLT1A2 LTR MaLR 0 374 2 4007 231 63 56 chr13 11022030 11022359 -90850810 + LTR52-int LTR ERVL 3003 3328 -228 910 237 11 0 chr13 11022583 11022760 -90850409 + LTR52-int LTR ERVL 3378 3556 0 1229 180 88 24 chr13 11022760 11023055 -90850114 + LTR52 LTR ERVL 1 314 -107 2132 129 3 0 chr13 11023082 11023377 -90849792 + AluSq SINE Alu 1 296 -17 2658 60 52 0 chr13 11023387 11023734 -90849435 + MLT2A2 LTR ERVL 89 453 0 3731 211 68 14 chr13 11023976 11025622 -90847547 + L1MB5 LINE L1 4416 6165 -9 216 326 86 51 chr13 11026359 11026534 -90846635 - L2 LINE L2 0 3272 3092 360 293 92 23 chr13 11027021 11027195 -90845974 + MIR SINE MIR 74 259 -3 2046 209 46 20 chr13 11027322 11027782 -90845387 + MLT1F LTR MaLR 71 542 0 346 253 79 84 chr13 11027782 11027984 -90845185 + MLT1F-int LTR MaLR 1 201 -1170 * 595 291 14 81 chr13 11027979 11028274 -90844895 + MLT1F-int LTR MaLR 327 601 -770 376 340 37 31 chr13 11028459 11028650 -90844519 + MLT1F-int LTR MaLR 692 883 -488 1713 176 28 20 chr13 11028928 11029286 -90843883 + L1MB7 LINE L1 5818 6178 -6 316 307 157 26 chr13 11029756 11030209 -90842960 - L2 LINE L2 -179 3093 2467 213 146 98 0 chr13 11031833 11031874 -90841295 - MIR SINE MIR 0 262 218 994 265 88 96 chr13 11032301 11032392 -90840777 + HAL1 LINE L1 844 934 -1573 2254 80 0 7 chr13 11032392 11032680 -90840489 + AluSg SINE Alu 23 308 -2 994 265 88 96 chr13 11032680 11032793 -90840376 + HAL1 LINE L1 934 1046 -1461 2187 100 3 35 chr13 11032793 11033112 -90840057 + AluSg SINE Alu 2 310 0 994 265 88 96 chr13 11033112 11033822 -90839347 + HAL1 LINE L1 1046 1752 -755 195 225 50 0 chr13 11033949 11033989 -90839180 + L2 LINE L2 3225 3266 -6 203 255 21 0 chr13 11034156 11034203 -90838966 - L2 LINE L2 -44 3228 3181 2566 181 75 22 chr13 11034478 11034970 -90838199 + MLT2B1 LTR ERVL 1 518 -2 488 290 65 55 chr13 11034998 11035308 -90837861 + L2 LINE L2 2543 2855 -459 277 333 35 11 chr13 11035537 11035624 -90837545 + L2 LINE L2 3216 3304 -9 297 314 114 43 chr13 11036462 11036787 -90836382 + L2 LINE L2 2187 2534 -780 189 283 57 0 chr13 11036976 11037029 -90836140 + L2 LINE L2 3257 3312 -1 796 186 79 0 chr13 11037077 11037217 -90835952 + MER58A DNA MER1_type 7 157 0 415 330 58 29 chr13 11037346 11037768 -90835401 - L2 LINE L2 -91 3222 2791 335 264 90 49 chr13 11037785 11037929 -90835240 - MIR SINE MIR -13 249 100 5709 134 15 9 chr13 11038106 11039063 -90834106 + L1PA14 LINE L1 5194 6159 -2 209 299 152 78 chr13 11039126 11039487 -90833682 + L2 LINE L2 2587 2974 -340 23 0 0 0 chr13 11040127 11040150 -90833019 + AT_rich Low_complexity Low_complexity 1 23 0 341 316 9 18 chr13 11040584 11040698 -90832471 + L3 LINE CR1 975 1087 -490 1835 171 0 3 chr13 11041407 11041700 -90831469 + AluSx SINE Alu 1 292 -20 1318 276 80 52 chr13 11041880 11042605 -90830564 + L1ME1 LINE L1 92 836 -5560 402 222 158 26 chr13 11042589 11042606 -90830563 + L1ME1 LINE L1 2125 2138 -4077 * 2131 107 35 0 chr13 11042606 11042896 -90830273 + AluSx SINE Alu 1 300 -12 402 222 158 26 chr13 11042896 11043145 -90830024 + L1ME1 LINE L1 2138 2391 -3824 273 318 11 80 chr13 11043172 11043436 -90829733 + L1PA15 LINE L1 110 355 -7226 8336 237 38 13 chr13 11044452 11044857 -90828312 + L1PA15 LINE L1 2403 2797 -4787 2009 32 119 4 chr13 11044857 11045108 -90828061 + L1PA4 LINE L1 5876 6155 0 8336 237 38 13 chr13 11045108 11047323 -90825846 + L1PA15 LINE L1 2797 5057 -2527 2712 152 2 30 chr13 11047324 11048018 -90825151 + L1PA15 LINE L1 6300 6969 -634 1706 134 51 0 chr13 11047998 11048324 -90824845 + L1PA15 LINE L1 7207 7596 -7 * 710 250 44 29 chr13 11048338 11048924 -90824245 + L1ME1 LINE L1 2387 3024 -3191 22 0 0 0 chr13 11048951 11048973 -90824196 + AT_rich Low_complexity Low_complexity 1 22 0 1211 182 40 16 chr13 11049008 11049255 -90823914 - L1MB2 LINE L1 0 6171 5919 3562 220 18 22 chr13 11049266 11050185 -90822984 + L1ME1 LINE L1 5206 6122 -113 296 208 97 84 chr13 11050362 11050516 -90822653 + MIR SINE MIR 65 220 -42 2261 117 64 19 chr13 11050568 11050927 -90822242 - THE1C LTR MaLR 0 375 1 1963 127 43 0 chr13 11051198 11051498 -90821671 - AluSq SINE Alu 0 313 1 1973 278 162 21 chr13 11051890 11052879 -90820290 + L2 LINE L2 1844 2971 -343 324 281 0 0 chr13 11054688 11054777 -90818392 + L1MEc LINE L1 658 746 -5650 839 183 6 73 chr13 11054783 11054947 -90818222 + AluJo SINE Alu 2 154 -158 1490 189 15 4 chr13 11054948 11055213 -90817956 + AluJb SINE Alu 21 288 -24 1312 205 39 6 chr13 11055222 11055578 -90817591 + L1MEc LINE L1 753 1120 -5276 317 117 40 97 chr13 11055566 11055885 -90817284 + L1MB7 LINE L1 5679 6132 -46 * 2441 67 10 0 chr13 11055885 11056182 -90816987 + AluY SINE Alu 1 300 -11 317 117 40 97 chr13 11056182 11056227 -90816942 + L1MB7 LINE L1 6132 6178 0 391 271 139 20 chr13 11056397 11056548 -90816621 - MIR SINE MIR -52 210 42 3986 75 34 0 chr13 11056548 11057044 -90816125 - LTR10D LTR ERV1 0 513 1 250 330 75 82 chr13 11057073 11057276 -90815893 - L2 LINE L2 -1203 2111 1908 1754 164 3 23 chr13 11057276 11057580 -90815589 + AluJo SINE Alu 1 298 -14 250 330 75 82 chr13 11057580 11057813 -90815356 - L2 LINE L2 -1406 1908 1678 1477 197 166 15 chr13 11058176 11058501 -90814668 + MLT1A2 LTR MaLR 1 374 0 1852 246 45 9 chr13 11058571 11058997 -90814172 + MLT1E2 LTR MaLR 137 577 -49 1338 268 62 18 chr13 11058998 11059876 -90813293 + L1M4c LINE L1 1123 2197 -4366 13077 184 20 10 chr13 11059959 11063723 -90809446 + L1PB1 LINE L1 2587 6382 -5 10167 169 78 81 chr13 11064813 11067124 -90806045 + L1P LINE L1 433 2738 -3408 2131 126 10 0 chr13 11067374 11067683 -90805486 - AluSx SINE Alu 0 312 1 708 260 137 13 chr13 11068735 11069035 -90804134 + L2 LINE L2 2193 2529 -785 248 281 11 34 chr13 11069067 11069156 -90804013 + MER58B DNA MER1_type 255 341 0 360 325 49 18 chr13 11069726 11069889 -90803280 + MIR3 SINE MIR 41 208 0 300 287 139 0 chr13 11070318 11070426 -90802743 + L2 LINE L2 3187 3309 -4 1954 238 155 45 chr13 11072941 11073916 -90799253 + L1MC4 LINE L1 6961 8042 0 552 275 62 38 chr13 11073951 11074191 -90798978 + L2 LINE L2 2804 3049 -223 1717 187 0 0 chr13 11074478 11074762 -90798407 - AluJo SINE Alu -28 284 1 26 0 0 0 chr13 11074762 11074788 -90798381 + AT_rich Low_complexity Low_complexity 1 26 0 357 183 56 0 chr13 11074908 11074979 -90798190 - MIR SINE MIR -129 133 59 414 331 84 81 chr13 11075716 11076601 -90796568 - L3 LINE CR1 -255 1322 436 1923 105 56 0 chr13 11076987 11077254 -90795915 - AluSx SINE Alu -30 282 1 180 219 0 0 chr13 11077936 11077968 -90795201 + L2 LINE L2 3256 3287 -26 225 213 38 38 chr13 11079092 11079172 -90793997 + (AGTAG)n Simple_repeat Simple_repeat 2 81 0 26142 140 15 23 chr13 11080079 11086418 -90786751 - L1PA8 LINE L1 -3 6484 139 706 275 138 73 chr13 11086571 11087077 -90786092 - MLT1E2 LTR MaLR -8 618 80 514 171 34 17 chr13 11087461 11087578 -90785591 + MER4C LTR ERV1 1 119 -346 656 256 73 136 chr13 11087597 11088229 -90784940 + LTR34 LTR ERV1 104 695 -4 192 316 20 31 chr13 11088310 11088408 -90784761 + L2 LINE L2 2995 3091 -181 312 303 0 0 chr13 11089356 11089455 -90783714 - MLT1E2 LTR MaLR -8 618 520 * 609 240 2 40 chr13 11089440 11089663 -90783506 + AluJ SINE Alu 81 260 -52 923 229 19 64 chr13 11089762 11089944 -90783225 - MLT1E2 LTR MaLR -371 255 87 1804 163 14 88 chr13 11089944 11090362 -90782807 - MLT1B LTR MaLR -1 389 3 923 229 19 64 chr13 11090362 11090446 -90782723 - MLT1E2 LTR MaLR -539 87 1 1738 171 31 3 chr13 11090655 11090947 -90782222 - AluSx SINE Alu -12 300 1 497 203 82 88 chr13 11091089 11091271 -90781898 - MER3 DNA MER1_type -5 204 24 1768 102 0 0 chr13 11091371 11091615 -90781554 - THE1C-int LTR MaLR -1336 244 1 2274 141 21 26 chr13 11091615 11091992 -90781177 - THE1C LTR MaLR 0 375 1 2049 126 6 25 chr13 11093529 11093846 -90779323 + AluSx SINE Alu 1 311 -1 544 199 0 89 chr13 11095553 11095699 -90777470 - FLAM_A SINE Alu 0 133 1 28 29 0 0 chr13 11095934 11095969 -90777200 + AT_rich Low_complexity Low_complexity 1 35 0 2529 51 0 0 chr13 11097146 11097438 -90775731 + AluY SINE Alu 1 292 -19 420 299 0 28 chr13 11098406 11098550 -90774619 - MER20 DNA MER1_type -64 155 16 1832 163 56 31 chr13 11098809 11099164 -90774005 + THE1B LTR MaLR 1 364 0 1778 177 7 0 chr13 11099456 11099761 -90773408 + AluSx SINE Alu 1 307 -5 2069 125 6 6 chr13 11099810 11100121 -90773048 + AluY SINE Alu 1 311 0 35 0 0 0 chr13 11100468 11100503 -90772666 + AT_rich Low_complexity Low_complexity 1 35 0 386 96 32 48 chr13 11100504 11100629 -90772540 + (TTATA)n Simple_repeat Simple_repeat 2 124 0 261 169 42 0 chr13 11100631 11100702 -90772467 + (TA)n Simple_repeat Simple_repeat 2 75 0 305 341 11 0 chr13 11100802 11100890 -90772279 + L1MC4 LINE L1 6615 6703 -1339 * 331 250 33 0 chr13 11100832 11100924 -90772245 - L1MC4 LINE L1 -1337 6705 6611 1273 200 86 21 chr13 11101576 11101856 -90771313 - AluJo SINE Alu -14 298 1 455 201 7 43 chr13 11101892 11102013 -90771156 - Charlie5 DNA MER1_type -8 2616 2499 2094 190 28 16 chr13 11102013 11102440 -90770729 + Tigger2a DNA MER2_type 2 433 -1 455 201 7 43 chr13 11102440 11102457 -90770712 - Charlie5 DNA MER1_type -125 2499 2483 436 275 192 0 chr13 11102847 11103040 -90770129 - Charlie8 DNA MER1_type -2131 286 57 230 380 64 64 chr13 11103321 11103682 -90769487 + L2 LINE L2 2873 3233 -39 198 71 0 0 chr13 11103872 11103900 -90769269 + (TG)n Simple_repeat Simple_repeat 2 29 0 914 277 4 11 chr13 11104434 11104694 -90768475 - MIR SINE MIR -2 260 3 237 298 279 0 chr13 11105012 11105116 -90768053 - MIR SINE MIR -41 221 89 781 328 79 48 chr13 11105409 11106414 -90766755 + L2 LINE L2 2233 3272 0 739 188 32 32 chr13 11106481 11106635 -90766534 + MER5A DNA MER1_type 1 154 -35 498 369 5 5 chr13 11106714 11106901 -90766268 + MIR3 SINE MIR 20 206 -2 2183 135 136 131 chr13 11107211 11107820 -90765349 + LTR18B LTR ERVL 3 614 0 911 228 0 0 chr13 11107909 11108089 -90765080 - HERVL18 LTR ERVL -4803 1244 1065 1958 228 32 0 chr13 11108103 11108511 -90764658 + HERVL18 LTR ERVL 68 488 -5559 356 169 14 0 chr13 11108780 11108851 -90764318 + MADE1 DNA Mariner 9 80 0 8080 159 15 29 chr13 11111102 11113123 -90760046 + L1P3 LINE L1 347 2358 -4103 895 284 74 53 chr13 11113235 11113740 -90759429 + L2 LINE L2 2750 3274 -39 646 290 21 16 chr13 11115397 11115583 -90757586 + MIR SINE MIR 10 196 -66 956 292 100 29 chr13 11115817 11116337 -90756832 - L1MC4a LINE L1 -1945 5863 5307 371 306 139 24 chr13 11116340 11116713 -90756456 - L1MC4a LINE L1 -846 5300 4885 707 158 113 15 chr13 11116735 11116868 -90756301 + FAM SINE Alu 20 165 -20 23 68 0 0 chr13 11116869 11116913 -90756256 + AT_rich Low_complexity Low_complexity 1 44 0 311 173 12 0 chr13 11116932 11117013 -90756156 + (TA)n Simple_repeat Simple_repeat 2 83 0 469 345 50 3 chr13 11117013 11117355 -90755814 - L1MC4a LINE L1 -1301 4845 4488 324 0 0 0 chr13 11117575 11117611 -90755558 + (TG)n Simple_repeat Simple_repeat 1 36 0 313 335 76 38 chr13 11117622 11117912 -90755257 - L1MC4a LINE L1 -2476 3670 3370 1595 214 0 4 chr13 11117918 11118199 -90754970 + AluJo SINE Alu 1 280 -32 1288 244 101 7 chr13 11118286 11118700 -90754469 + MLT1D LTR MaLR 51 503 -2 514 217 45 19 chr13 11118779 11118936 -90754233 - HAL1b LINE L1 -849 499 339 2555 135 31 26 chr13 11119681 11120214 -90752955 + HUERS-P1 LTR ERV1 3541 4277 -1986 * 5638 131 55 19 chr13 11120205 11121782 -90751387 + HUERS-P1 LTR ERV1 5307 7168 -648 26 0 0 0 chr13 11121949 11121975 -90751194 + AT_rich Low_complexity Low_complexity 1 26 0 260 313 120 88 chr13 11122206 11122252 -90750917 - L2 LINE L2 0 3272 3229 1580 191 94 31 chr13 11122252 11122603 -90750566 + MER93b LTR ERV1 1 373 0 260 313 120 88 chr13 11122603 11122748 -90750421 - L2 LINE L2 -43 3229 3075 551 89 13 0 chr13 11123268 11123347 -90749822 + MADE1 DNA Mariner 1 80 0 231 243 57 121 chr13 11123498 11123638 -90749531 - MIR SINE MIR -66 196 66 242 263 158 21 chr13 11123885 11123980 -90749189 + MIR SINE MIR 86 193 -69 220 294 22 66 chr13 11124562 11124698 -90748471 + MIR SINE MIR 91 220 -42 2333 112 0 0 chr13 11124792 11125097 -90748072 + AluSx SINE Alu 1 305 -7 2090 132 0 14 chr13 11126830 11127126 -90746043 + AluSx SINE Alu 1 292 -20 453 281 60 10 chr13 11127286 11127485 -90745684 - MLT1J2 LTR MaLR -205 245 37 3090 105 28 0 chr13 11127485 11127988 -90745181 + L1P LINE L1 4816 5332 -814 3443 211 29 17 chr13 11128094 11128982 -90744187 + L1P LINE L1 4499 5397 -749 * 5739 118 15 3 chr13 11128981 11130511 -90742658 + L1PA11 LINE L1 4360 5907 -267 2534 54 0 0 chr13 11130513 11130811 -90742358 + AluSg SINE Alu 1 298 -12 457 213 53 73 chr13 11131004 11131154 -90742015 - MER89 LTR ERV1 0 559 413 271 284 107 52 chr13 11131162 11131472 -90741697 + MER50 LTR ERV1 10 336 -398 277 208 0 0 chr13 11131714 11131767 -90741402 - MLT1H1 LTR MaLR -161 394 342 2511 78 0 0 chr13 11131767 11132076 -90741093 + AluY SINE Alu 1 309 -2 1766 76 61 11 chr13 11132076 11132338 -90740831 + L1PA11 LINE L1 5900 6174 0 4673 113 9 8 chr13 11132338 11133107 -90740062 + L1PA16 LINE L1 5388 6157 -9 212 331 107 0 chr13 11133634 11133755 -90739414 - MIR SINE MIR -6 256 123 2106 123 0 0 chr13 11135015 11135300 -90737869 - AluSg SINE Alu -21 289 5 2025 231 66 42 chr13 11135627 11136016 -90737153 + MLT1E LTR MaLR 1 410 -183 753 228 0 6 chr13 11136016 11136178 -90736991 + FRAM SINE Alu 1 161 -5 2025 231 66 42 chr13 11136178 11136365 -90736804 + MLT1E LTR MaLR 410 591 -2 259 274 81 65 chr13 11136409 11136533 -90736636 + L2 LINE L2 3139 3264 -8 198 103 0 0 chr13 11136543 11136572 -90736597 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 204 232 18 36 chr13 11137055 11137111 -90736058 - MIR SINE MIR -98 164 110 2223 113 7 7 chr13 11137812 11138121 -90735048 - AluSx SINE Alu -3 309 1 703 267 24 6 chr13 11138157 11138322 -90734847 + MER5A DNA MER1_type 18 185 -4 23 92 0 0 chr13 11138341 11138406 -90734763 + AT_rich Low_complexity Low_complexity 1 65 0 2160 69 0 15 chr13 11138407 11138681 -90734488 + AluY SINE Alu 28 297 -14 183 306 0 32 chr13 11138762 11138824 -90734345 + L2 LINE L2 3247 3306 -7 1048 141 11 16 chr13 11140426 11140617 -90732552 + L1MA5A LINE L1 6105 6294 -3 1249 211 0 0 chr13 11140618 11140836 -90732333 + AluJo SINE Alu 76 293 -19 1549 211 87 6 chr13 11140841 11141382 -90731787 + Zaphod DNA AcHobo 748 1332 -2699 770 210 68 18 chr13 11141414 11141633 -90731536 + Zaphod DNA AcHobo 3783 4012 -19 243 225 28 14 chr13 11141803 11141874 -90731295 + L1ME4a LINE L1 5971 6042 -79 1810 166 3 13 chr13 11143132 11143445 -90729724 - AluJo SINE Alu -2 310 1 2077 152 11 6 chr13 11143885 11144247 -90728922 + MLT2D LTR ERVL 1 364 -50 245 210 16 0 chr13 11144251 11144313 -90728856 + (TA)n Simple_repeat Simple_repeat 1 63 0 199 303 34 67 chr13 11144519 11144638 -90728531 + MIR SINE MIR 31 145 -117 203 232 14 43 chr13 11145320 11145389 -90727780 - L2 LINE L2 -23 3290 3224 1263 294 151 17 chr13 11145599 11146296 -90726873 - L2 LINE L2 -837 2477 1688 261 278 0 14 chr13 11146302 11146374 -90726795 + (CA)n Simple_repeat Simple_repeat 1 71 0 2509 77 0 0 chr13 11146504 11146815 -90726354 - AluY SINE Alu 0 311 1 194 247 0 27 chr13 11146886 11146959 -90726210 - L2 LINE L2 -1629 1685 1615 223 237 25 17 chr13 11147742 11147860 -90725309 + (TA)n Simple_repeat Simple_repeat 1 119 0 653 287 128 13 chr13 11147873 11148270 -90724899 + L1ME4a LINE L1 5603 6045 -76 1033 176 44 24 chr13 11148429 11148679 -90724490 - L1MDa LINE L1 -4713 1827 1573 26 0 0 0 chr13 11148895 11148921 -90724248 + GC_rich Low_complexity Low_complexity 1 26 0 221 214 29 0 chr13 11149596 11149666 -90723503 + (TA)n Simple_repeat Simple_repeat 1 72 0 758 287 127 2 chr13 11149679 11150073 -90723096 + L1ME4a LINE L1 5603 6045 -76 2078 167 78 37 chr13 11150223 11150812 -90722357 - L1MDa LINE L1 -4705 1835 1220 3931 155 60 8 chr13 11150819 11151587 -90721582 - L1MB7 LINE L1 -16 6168 5361 1678 201 76 44 chr13 11151568 11151837 -90721332 - L1MDa LINE L1 -5330 1210 951 * 2112 170 59 7 chr13 11151837 11152242 -90720927 + MSTB LTR MaLR 1 426 0 1678 201 76 44 chr13 11152242 11152697 -90720472 - L1MDa LINE L1 -5589 951 143 33 43 0 0 chr13 11152758 11152805 -90720364 + AT_rich Low_complexity Low_complexity 1 47 0 1898 179 9 9 chr13 11153960 11154301 -90718868 + MER2 DNA MER2_type 1 341 -3 1850 132 3 13 chr13 11155480 11155784 -90717385 + L1PB1 LINE L1 5851 6151 0 223 287 225 29 chr13 11156536 11156745 -90716424 + MIR SINE MIR 1 250 -12 286 204 151 11 chr13 11157664 11157757 -90715412 - L1MB7 LINE L1 -1312 4834 4729 239 293 0 0 chr13 11157804 11157886 -90715283 + L1MC4a LINE L1 4906 4987 -1159 329 280 99 71 chr13 11157923 11158179 -90714990 + L1MC4a LINE L1 5008 5282 -864 2123 118 0 0 chr13 11158179 11158466 -90714703 - AluSq SINE Alu -26 287 1 329 280 99 71 chr13 11158466 11158592 -90714577 + L1MC4a LINE L1 5282 5403 -743 379 285 163 19 chr13 11158593 11159004 -90714165 + L1MC4a LINE L1 5443 5912 -1896 338 328 25 37 chr13 11159226 11159467 -90713702 + L1MC4a LINE L1 5812 6049 -1759 2037 154 0 0 chr13 11159878 11160176 -90712993 - AluSx SINE Alu -14 298 1 357 223 11 0 chr13 11160211 11160305 -90712864 + L1MB2 LINE L1 3958 4052 -2094 * 816 136 14 0 chr13 11160299 11160446 -90712723 + L1MB2 LINE L1 4457 4605 -1541 * 938 188 110 0 chr13 11160443 11160715 -90712454 - L1 LINE L1 -1682 4464 4163 2392 148 12 7 chr13 11160715 11161121 -90712048 + Tigger1 DNA MER2_type 1 408 -2010 4617 165 44 11 chr13 11161121 11162236 -90710933 + L1MB2 LINE L1 5009 6168 -3 546 380 5 9 chr13 11163113 11163334 -90709835 - L3 LINE CR1 -25 1552 1333 240 333 48 0 chr13 11164644 11164749 -90708420 + MIR SINE MIR 103 212 -50 744 174 8 0 chr13 11164844 11164976 -90708193 + FLAM_C SINE Alu 1 133 0 306 50 0 0 chr13 11165387 11165427 -90707742 + (CA)n Simple_repeat Simple_repeat 1 40 0 5079 123 27 25 chr13 11165789 11166848 -90706321 + L1PB4 LINE L1 5068 6137 -19 256 263 51 17 chr13 11166763 11166881 -90706288 + L1MA4A LINE L1 6182 6303 0 * 22 35 0 0 chr13 11167293 11167322 -90705847 + AT_rich Low_complexity Low_complexity 1 29 0 955 195 42 0 chr13 11167366 11167602 -90705567 + L1MA4 LINE L1 6053 6298 -2 597 235 128 11 chr13 11168130 11168317 -90704852 + MER3 DNA MER1_type 1 209 0 325 276 11 11 chr13 11168336 11168423 -90704746 + L2 LINE L2 3184 3270 -2 444 316 48 39 chr13 11168429 11168660 -90704509 - MIR SINE MIR -22 240 8 2114 238 100 27 chr13 11168733 11169694 -90703475 - L1ME3A LINE L1 -4 6149 5122 1773 167 88 24 chr13 11169695 11170151 -90703018 + Charlie1 DNA MER1_type 2012 2496 -265 21 36 0 0 chr13 11170151 11170179 -90702990 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr13 11170200 11170250 -90702919 + AT_rich Low_complexity Low_complexity 1 50 0 548 157 37 0 chr13 11170443 11170551 -90702618 + Charlie1 DNA MER1_type 2650 2761 0 226 271 0 31 chr13 11170551 11170647 -90702522 - L1ME3A LINE L1 -3562 2567 2475 391 262 0 0 chr13 11170673 11170780 -90702389 - L1ME3A LINE L1 -3752 2377 2271 604 297 54 83 chr13 11170780 11171188 -90701981 - L1ME3A LINE L1 -4932 1187 792 1591 189 29 3 chr13 11171192 11171535 -90701634 - L1MB5 LINE L1 -138 6036 5685 2587 101 6 8 chr13 11171564 11171929 -90701240 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr13 11173108 11173130 -90700039 + AT_rich Low_complexity Low_complexity 1 22 0 2310 89 7 0 chr13 11173301 11173592 -90699577 - AluSc SINE Alu -16 293 1 577 174 99 0 chr13 11174086 11174207 -90698962 - LTR12 LTR ERV1 -234 480 348 301 180 0 0 chr13 11174208 11174269 -90698900 - LTR30 LTR ERV1 -110 612 552 1172 111 0 137 chr13 11174269 11174539 -90698630 - LTR12 LTR ERV1 -429 285 53 240 250 0 0 chr13 11174539 11174591 -90698578 - LTR30 LTR ERV1 -670 52 1 1740 160 28 7 chr13 11175648 11175935 -90697234 + AluJo SINE Alu 1 293 -19 1164 216 107 88 chr13 11176235 11176880 -90696289 + L1ME3 LINE L1 5499 6155 -7 2100 114 3 0 chr13 11176890 11177179 -90695990 + AluSp SINE Alu 19 308 -5 263 289 50 25 chr13 11177890 11178011 -90695158 + MIR SINE MIR 65 188 -74 2056 158 45 5 chr13 11178117 11178496 -90694673 + MLT2C2 LTR ERVL 1 394 -70 369 0 0 0 chr13 11178531 11178572 -90694597 + (TG)n Simple_repeat Simple_repeat 2 42 0 7424 156 31 13 chr13 11178686 11180165 -90693004 - L1P LINE L1 -2519 3627 2122 3748 131 4 5 chr13 11180166 11181006 -90692163 - L1MA3 LINE L1 -474 7250 6411 677 173 12 87 chr13 11181725 11181898 -90691271 + MLT1B LTR MaLR 1 160 -214 223 239 0 0 chr13 11181899 11181945 -90691224 + G-rich Low_complexity Low_complexity 3 48 0 754 191 16 57 chr13 11182026 11182220 -90690949 + MLT1B LTR MaLR 205 390 0 1974 95 4 4 chr13 11182996 11183259 -90689910 - AluSc SINE Alu -46 263 1 9510 130 1 30 chr13 11183260 11184661 -90688508 - L1P4 LINE L1 -491 5683 4363 325 44 0 0 chr13 11184661 11184706 -90688463 - L1PA3 LINE L1 -3 6152 6108 9510 130 1 30 chr13 11184706 11185348 -90687821 - L1P4 LINE L1 -1811 4363 3704 18055 175 52 23 chr13 11185448 11191192 -90681977 - L1MA3 LINE L1 -1413 6152 568 2131 116 142 16 chr13 11191192 11191572 -90681597 + MSTA LTR MaLR 1 428 0 18055 175 52 23 chr13 11191572 11192137 -90681032 - L1MA3 LINE L1 -6997 568 21 2345 233 89 10 chr13 11192137 11193017 -90680152 - L1MDb LINE L1 -4954 1452 458 1326 273 123 21 chr13 11193010 11193570 -90679599 - L1MDb LINE L1 -5776 633 17 * 675 299 43 4 chr13 11194837 11195068 -90678101 + MIR SINE MIR 15 254 -8 27 29 0 0 chr13 11196002 11196036 -90677133 + AT_rich Low_complexity Low_complexity 1 34 0 1332 178 12 17 chr13 11196557 11196798 -90676371 + AluJo SINE Alu 49 288 -24 4085 168 33 48 chr13 11196909 11198686 -90674483 + L1MA3 LINE L1 4558 6298 -7 211 324 89 49 chr13 11198702 11198927 -90674242 - L2 LINE L2 -210 3062 2829 253 336 85 47 chr13 11198933 11199251 -90673918 - L2 LINE L2 -1 3271 2942 200 296 136 12 chr13 11200190 11200271 -90672898 + MIR SINE MIR 16 106 -102 420 208 0 0 chr13 11200404 11200476 -90672693 - MER2 DNA MER2_type -10 335 264 1766 170 88 25 chr13 11200524 11200877 -90672292 + THE1C LTR MaLR 1 375 0 2171 29 4 0 chr13 11200910 11201155 -90672014 - L1PA4 LINE L1 -6 6149 5904 405 176 0 0 chr13 11201156 11201230 -90671939 + MER2 DNA MER2_type 108 181 -164 189 270 40 40 chr13 11201449 11201523 -90671646 + MIR SINE MIR 79 152 -110 1118 144 12 0 chr13 11201535 11201702 -90671467 - MER2 DNA MER2_type -175 170 2 267 202 136 42 chr13 11201857 11202005 -90671164 + MLT1H LTR MaLR 249 592 -1 188 262 149 28 chr13 11202005 11202112 -90671057 + MIR SINE MIR 114 233 -29 207 232 179 71 chr13 11202296 11202313 -90670856 - L2 LINE L2 -1 3271 3257 2356 166 60 20 chr13 11202313 11202344 -90670825 - MLT2C2 LTR ERVL 0 464 436 405 0 0 0 chr13 11202344 11202389 -90670780 + (CA)n Simple_repeat Simple_repeat 2 46 0 2356 166 60 20 chr13 11202389 11202803 -90670366 - MLT2C2 LTR ERVL -28 436 1 207 232 179 71 chr13 11202803 11202897 -90670272 - L2 LINE L2 -15 3257 3148 257 289 50 25 chr13 11202909 11203030 -90670139 - MIR SINE MIR -74 188 65 2303 104 3 0 chr13 11203741 11204048 -90669121 - AluSq SINE Alu -5 308 1 416 100 0 0 chr13 11204049 11204109 -90669060 - L1MA5A LINE L1 -171 6126 6067 544 184 184 28 chr13 11204110 11204327 -90668842 - Zaphod DNA AcHobo -3275 756 506 968 244 44 0 chr13 11204328 11204533 -90668636 + MER58A DNA MER1_type 2 215 -9 604 250 8 0 chr13 11204542 11204674 -90668495 - Zaphod DNA AcHobo -3518 513 381 526 302 93 24 chr13 11204706 11204954 -90668215 - Zaphod DNA AcHobo -3716 315 51 192 209 47 0 chr13 11205489 11205532 -90667637 + L3 LINE CR1 1375 1419 -158 256 400 24 0 chr13 11205727 11205852 -90667317 - MIR SINE MIR -128 134 7 418 218 73 32 chr13 11207296 11207420 -90665749 - MER112 DNA MER1_type -126 134 6 264 317 17 33 chr13 11207424 11207544 -90665625 - L1ME LINE L1 -513 5657 5540 227 252 65 9 chr13 11207964 11208071 -90665098 - Charlie8 DNA MER1_type -1926 491 379 486 249 42 114 chr13 11208147 11208384 -90664785 - Charlie8 DNA MER1_type -2196 221 2 260 324 0 0 chr13 11208547 11208615 -90664554 + L2 LINE L2 3205 3272 0 518 258 18 30 chr13 11209583 11209750 -90663419 - MIR SINE MIR -4 258 94 182 330 143 44 chr13 11209827 11210009 -90663160 - L2 LINE L2 -68 3204 3005 1208 173 0 0 chr13 11210010 11210201 -90662968 + AluJb SINE Alu 121 311 -1 282 301 7 44 chr13 11210227 11210363 -90662806 - L2 LINE L2 -300 2972 2842 21 0 0 0 chr13 11211691 11211712 -90661457 + AT_rich Low_complexity Low_complexity 1 21 0 332 249 164 73 chr13 11214234 11214563 -90658606 - L1MC4a LINE L1 -1636 6172 5814 406 223 230 14 chr13 11214573 11214712 -90658457 - L1MC4a LINE L1 -2057 5751 5583 608 211 8 8 chr13 11214818 11214941 -90658228 + MER94 DNA DNA 2 124 -10 636 125 19 10 chr13 11215070 11215174 -90657995 + L1MB3 LINE L1 6075 6179 -4 1397 238 11 26 chr13 11215195 11215544 -90657625 + L1ME1 LINE L1 5823 6166 0 4491 146 21 34 chr13 11216207 11217023 -90656146 + L1MB3 LINE L1 5370 6174 -9 1413 208 48 10 chr13 11217288 11217608 -90655561 + MER33 DNA MER1_type 1 323 -1 698 146 177 0 chr13 11217615 11217745 -90655424 + MER5A DNA MER1_type 34 186 -3 884 226 123 39 chr13 11218638 11218948 -90654221 - MER46C DNA MER2_type -1 337 2 218 265 29 59 chr13 11219308 11219410 -90653759 + MIR SINE MIR 164 262 0 21 0 0 0 chr13 11219529 11219550 -90653619 + AT_rich Low_complexity Low_complexity 1 21 0 2000 174 34 8 chr13 11219611 11219968 -90653201 + MLT2D LTR ERVL 1 366 -48 907 223 41 0 chr13 11220734 11220931 -90652238 - MER3 DNA MER1_type 0 209 5 329 296 79 17 chr13 11220993 11221131 -90652038 - MIR SINE MIR -62 146 8 208 294 49 10 chr13 11221322 11221424 -90651745 - L2 LINE L2 -1397 1917 1812 328 236 176 0 chr13 11221562 11221710 -90651459 - Charlie8 DNA MER1_type -2141 276 103 501 124 82 10 chr13 11221753 11221850 -90651319 + L1MB3 LINE L1 6080 6183 0 470 273 8 0 chr13 11221950 11222071 -90651098 + MER5B DNA MER1_type 51 172 -6 282 279 76 0 chr13 11223858 11223937 -90649232 - Charlie8 DNA MER1_type -2314 103 19 217 149 68 108 chr13 11224070 11224144 -90649025 - L2 LINE L2 -2 3311 3241 2418 86 186 121 chr13 11224325 11225002 -90648167 + LTR12 LTR ERV1 1 2313 -125 5001 116 9 8 chr13 11225475 11226244 -90646925 - L1PA16 LINE L1 -9 6157 5388 1901 76 61 11 chr13 11226244 11226506 -90646663 - L1PA11 LINE L1 0 6174 5900 2560 68 0 0 chr13 11226506 11226813 -90646356 - AluY SINE Alu -2 309 3 21 0 0 0 chr13 11226829 11226850 -90646319 + AT_rich Low_complexity Low_complexity 1 21 0 3709 152 47 29 chr13 11227871 11228557 -90644612 - L1MB3 LINE L1 0 6183 5486 1366 206 204 0 chr13 11228561 11228944 -90644225 - L1PA16 LINE L1 -924 5222 4762 275 138 12 62 chr13 11228934 11229014 -90644155 - L1M4c LINE L1 -4093 2291 2216 * 298 354 24 0 chr13 11230237 11230364 -90642805 + L2 LINE L2 2920 3049 -223 2075 101 66 0 chr13 11230776 11231064 -90642105 - AluSg SINE Alu -3 307 1 494 239 122 20 chr13 11231632 11231829 -90641340 + L3 LINE CR1 1212 1428 -149 964 251 27 5 chr13 11232062 11232285 -90640884 - MIR SINE MIR -7 255 28 187 253 60 60 chr13 11232919 11233002 -90640167 - L3 LINE CR1 -1 1576 1494 2472 73 0 7 chr13 11233967 11234270 -90638899 + AluSp SINE Alu 1 301 -12 1996 243 100 18 chr13 11236063 11236945 -90636224 + L2 LINE L2 2327 3305 -8 304 348 22 0 chr13 11237152 11237241 -90635928 + MIR SINE MIR 49 139 -123 4242 171 39 54 chr13 11237869 11238923 -90634246 - L1MB3 LINE L1 -3 6180 5379 * 4410 177 67 49 chr13 11238915 11239945 -90633224 - L1MD2 LINE L1 -229 6130 5121 1679 187 3 3 chr13 11239945 11240229 -90632940 - AluJo SINE Alu -23 289 6 4410 177 67 49 chr13 11240229 11240341 -90632828 - L1MD2 LINE L1 -1238 5121 5013 1889 135 43 0 chr13 11240341 11240622 -90632547 + AluSx SINE Alu 1 293 -19 4410 177 67 49 chr13 11240622 11240906 -90632263 - L1MD2 LINE L1 -1346 5013 4674 * 4669 133 35 19 chr13 11240902 11241702 -90631467 + L1PB4 LINE L1 5344 6156 0 261 224 164 45 chr13 11241973 11242107 -90631062 + L1ME4a LINE L1 5955 6104 -17 6055 99 31 0 chr13 11243397 11244331 -90628838 + L1PA10 LINE L1 5179 6136 -32 334 367 0 0 chr13 11244431 11244600 -90628569 + G-rich Low_complexity Low_complexity 1 169 0 27 0 0 0 chr13 11245424 11245451 -90627718 + AT_rich Low_complexity Low_complexity 1 27 0 2161 79 9 88 chr13 11245494 11245822 -90627347 - AluY SINE Alu -9 302 1 316 293 0 0 chr13 11245937 11246012 -90627157 - L2 LINE L2 -4 3309 3235 250 202 222 40 chr13 11246107 11246206 -90626963 + MLT1K LTR MaLR 128 244 -344 342 194 48 0 chr13 11247653 11247715 -90625454 - L2 LINE L2 0 3272 3208 336 197 0 45 chr13 11247776 11247842 -90625327 - L2 LINE L2 0 3272 3210 334 209 0 45 chr13 11247901 11247968 -90625201 - L2 LINE L2 0 3272 3209 1522 254 129 17 chr13 11248192 11248672 -90624497 + MLT1F LTR MaLR 1 534 -8 2113 83 58 0 chr13 11248716 11248993 -90624176 + AluSg1 SINE Alu 1 293 -16 336 299 46 69 chr13 11249620 11249794 -90623375 - L2 LINE L2 -247 3066 2897 673 287 11 0 chr13 11249851 11250032 -90623137 - L1MEd LINE L1 -4702 1861 1679 376 166 74 23 chr13 11250067 11250175 -90622994 - L1MEd LINE L1 -4886 1486 1287 1576 146 59 31 chr13 11250180 11250467 -90622702 + MSTB1 LTR MaLR 2 296 -136 2222 99 42 19 chr13 11250567 11250880 -90622289 + L1PA10 LINE L1 5833 6152 -16 230 237 0 0 chr13 11250887 11250933 -90622236 + A-rich Low_complexity Low_complexity 1 49 -10 2906 126 32 2 chr13 11250933 11251376 -90621793 + L1MA2 LINE L1 5849 6304 0 230 237 0 0 chr13 11251376 11251388 -90621781 + A-rich Low_complexity Low_complexity 48 59 0 3065 75 10 0 chr13 11251390 11251790 -90621379 - L1PA4 LINE L1 -1802 4344 3941 * 6403 28 1 0 chr13 11251779 11252529 -90620640 + L1PA4 LINE L1 4352 5102 -1044 5349 42 0 0 chr13 11252529 11253128 -90620041 + L1PA4 LINE L1 5551 6153 -2 1388 161 80 0 chr13 11253130 11253416 -90619753 + L1MD2 LINE L1 1570 1878 -4662 * 8867 41 0 0 chr13 11253409 11254480 -90618689 - L1PA4 LINE L1 -3550 2596 1526 24113 33 4 2 chr13 11254480 11258010 -90615159 + L1PA4 LINE L1 2616 6155 0 807 176 6 6 chr13 11258018 11258183 -90614986 + L1MD2 LINE L1 1859 2023 -4517 5905 215 67 61 chr13 11258185 11260423 -90612746 + L1MD2 LINE L1 3779 6002 -751 239 170 0 57 chr13 11260423 11260476 -90612693 + MLT1B LTR MaLR 1 50 -340 * 348 143 79 0 chr13 11260473 11260536 -90612633 + MLT1C LTR MaLR 400 467 0 * 5905 215 67 61 chr13 11260536 11260947 -90612222 + L1MD2 LINE L1 6062 6469 -284 222 37 0 0 chr13 11260947 11260974 -90612195 + (CA)n Simple_repeat Simple_repeat 2 28 0 5905 215 67 61 chr13 11260974 11261045 -90612124 + L1MD2 LINE L1 6469 6538 -215 2182 158 38 28 chr13 11261045 11261083 -90612086 - MER57A LTR ERV1 0 403 367 2021 147 0 25 chr13 11261083 11261402 -90611767 + AluSx SINE Alu 1 311 -1 2182 158 38 28 chr13 11261402 11261562 -90611607 - MER57A LTR ERV1 -36 367 210 2407 77 0 3 chr13 11261562 11261862 -90611307 + AluY SINE Alu 2 300 -11 2182 158 38 28 chr13 11261862 11262061 -90611108 - MER57A LTR ERV1 -193 210 1 5905 215 67 61 chr13 11262061 11262181 -90610988 + L1MD2 LINE L1 6538 6744 -9 582 267 0 7 chr13 11263019 11263154 -90610015 + MER45A DNA AcHobo 45 178 0 9473 36 4 0 chr13 11263211 11265055 -90608114 - L1PA4 LINE L1 0 6155 4305 805 266 15 0 chr13 11265334 11265537 -90607632 + MER3 DNA MER1_type 4 209 0 1359 287 121 24 chr13 11266310 11267217 -90605952 + L2 LINE L2 2320 3313 0 35 0 0 0 chr13 11267545 11267580 -90605589 + AT_rich Low_complexity Low_complexity 1 35 0 186 310 69 0 chr13 11267709 11267767 -90605402 + L2 LINE L2 3175 3236 -36 1120 126 20 40 chr13 11268562 11268761 -90604408 + L1MA5A LINE L1 6098 6292 -5 2169 124 3 3 chr13 11268947 11269253 -90603916 - AluSc SINE Alu -3 306 1 21 82 0 0 chr13 11271373 11271422 -90601747 + AT_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr13 11271866 11271893 -90601276 + AT_rich Low_complexity Low_complexity 1 27 0 282 292 15 54 chr13 11273435 11273565 -90599604 + MER5A DNA MER1_type 1 125 -64 291 179 0 0 chr13 11273627 11273694 -90599475 + (CA)n Simple_repeat Simple_repeat 2 68 0 1671 203 7 0 chr13 11274750 11275036 -90598133 + AluJo SINE Alu 1 288 -24 42 20 0 0 chr13 11275037 11275086 -90598083 + AT_rich Low_complexity Low_complexity 1 49 0 374 289 159 0 chr13 11275900 11276108 -90597061 - L1ME4a LINE L1 -199 5922 5682 180 0 0 0 chr13 11276109 11276129 -90597040 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 1966 122 3 14 chr13 11276129 11276416 -90596753 - AluSx SINE Alu -28 284 1 234 315 0 0 chr13 11277029 11277102 -90596067 - L2 LINE L2 -11 3302 3230 197 273 100 109 chr13 11277177 11277397 -90595772 - MIR SINE MIR -16 246 29 211 301 82 0 chr13 11279552 11279625 -90593544 + MIR SINE MIR 105 183 -79 205 349 12 23 chr13 11280799 11280885 -90592284 + L2 LINE L2 3228 3312 -1 619 244 161 0 chr13 11282536 11282716 -90590453 + Charlie2 DNA MER1_type 78 286 -2496 6101 65 5 13 chr13 11282721 11283488 -90589681 + L1PA10 LINE L1 5407 6167 -1 658 260 136 18 chr13 11283610 11283941 -90589228 - LTR33A LTR ERVL -2 521 152 550 257 79 19 chr13 11283953 11284167 -90589002 + Charlie2 DNA MER1_type 2636 2862 0 323 349 54 7 chr13 11284287 11284436 -90588733 - MIR SINE MIR -77 185 30 432 284 209 0 chr13 11284509 11284657 -90588512 - MER5A DNA MER1_type -1 188 10 231 163 12 116 chr13 11284685 11284771 -90588398 - Charlie7 DNA MER1_type -44 2568 2492 * 1101 281 124 25 chr13 11284756 11285273 -90587896 - Charlie7 DNA MER1_type -1927 685 118 544 110 9 9 chr13 11285715 11285824 -90587345 + (TATG)n Simple_repeat Simple_repeat 3 111 0 228 147 0 0 chr13 11285824 11285858 -90587311 - Alu SINE Alu -17 285 252 1771 142 67 0 chr13 11285876 11286143 -90587026 - AluSx SINE Alu -27 285 1 801 234 270 9 chr13 11286321 11286847 -90586322 - L2 LINE L2 -12 3301 2641 319 259 30 82 chr13 11286962 11287097 -90586072 + MER69A DNA AcHobo 28 155 -22 294 388 43 0 chr13 11287146 11287262 -90585907 + L2 LINE L2 3137 3257 -15 317 303 104 19 chr13 11288844 11289055 -90584114 - L2 LINE L2 -216 3056 2828 262 262 0 48 chr13 11289562 11289646 -90583523 - L2 LINE L2 0 3272 3193 1004 186 26 26 chr13 11289757 11289950 -90583219 - MER20 DNA MER1_type -2 217 25 250 295 95 53 chr13 11290522 11290617 -90582552 + L2 LINE L2 3198 3296 -17 217 314 105 24 chr13 11291721 11291845 -90581324 - L2 LINE L2 -2 3311 3178 198 0 0 0 chr13 11292658 11292680 -90580489 + (TA)n Simple_repeat Simple_repeat 2 23 0 381 235 197 33 chr13 11292799 11292982 -90580187 - MIR SINE MIR -21 241 29 481 291 8 31 chr13 11293319 11293446 -90579723 - L2 LINE L2 -1 3312 3189 1385 206 45 24 chr13 11293486 11293773 -90579396 + AluJo SINE Alu 1 293 -19 25 0 0 0 chr13 11293785 11293810 -90579359 + AT_rich Low_complexity Low_complexity 1 25 0 1670 147 7 18 chr13 11293819 11294104 -90579065 + AluSx SINE Alu 1 282 -30 225 111 0 44 chr13 11294126 11294171 -90578998 + (CA)n Simple_repeat Simple_repeat 2 44 0 228 135 0 0 chr13 11294320 11294357 -90578812 + (CA)n Simple_repeat Simple_repeat 2 38 0 182 382 56 0 chr13 11295781 11295925 -90577244 + MIR SINE MIR 111 262 0 2389 84 0 3 chr13 11296774 11297082 -90576087 + AluSc SINE Alu 1 307 -2 207 289 13 0 chr13 11297318 11297394 -90575775 + (CCA)n Simple_repeat Simple_repeat 2 78 0 255 157 20 0 chr13 11298203 11298254 -90574915 + MER91B DNA MER1_type 79 130 -60 466 200 33 0 chr13 11298276 11298366 -90574803 + MER91B DNA MER1_type 97 189 -1 334 176 0 15 chr13 11299665 11299733 -90573436 + MER116 DNA Mariner 1 67 -13 201 255 191 32 chr13 11301507 11301601 -90571568 - MER5A DNA MER1_type -42 147 39 341 184 72 72 chr13 11301703 11301828 -90571341 - MIR SINE MIR -54 208 84 1067 184 165 4 chr13 11302432 11302704 -90570465 + MER33 DNA MER1_type 4 319 -5 8864 237 55 53 chr13 11303071 11306694 -90566475 - L1MB7 LINE L1 0 6682 2721 2104 128 0 22 chr13 11306694 11307007 -90566162 + AluSx SINE Alu 2 307 -5 8864 237 55 53 chr13 11307007 11309284 -90563885 - L1MB7 LINE L1 -3961 2721 451 1487 273 5 11 chr13 11309296 11309433 -90563736 - L1MB7 LINE L1 -6142 400 264 2055 136 0 20 chr13 11309433 11309735 -90563434 - AluSx SINE Alu -16 296 1 1487 273 5 11 chr13 11309735 11309978 -90563191 - L1MB7 LINE L1 -6278 264 22 1837 146 27 6 chr13 11309996 11310326 -90562843 - MER96B DNA MER1_type? -80 337 1 7034 108 26 18 chr13 11310329 11311391 -90561778 + MER11C LTR ERVK 1 1071 0 188 169 0 51 chr13 11312681 11312740 -90560429 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 680 280 82 20 chr13 11313985 11314289 -90558880 + L2 LINE L2 2984 3306 -7 2579 206 22 64 chr13 11314298 11314905 -90558264 - MER67B LTR ERV1 -4 657 81 2471 114 22 8 chr13 11314905 11315273 -90557896 + THE1C LTR MaLR 3 375 0 2579 206 22 64 chr13 11315273 11315351 -90557818 - MER67B LTR ERV1 -580 81 1 566 104 0 0 chr13 11315352 11315429 -90557740 - MER31B LTR ERV1 -387 79 3 312 197 0 179 chr13 11316194 11316311 -90556858 - MER69 DNA AcHobo 0 2526 2431 453 225 18 9 chr13 11316312 11316423 -90556746 - MER69 DNA AcHobo -2414 112 1 427 193 0 107 chr13 11317248 11317388 -90555781 + MER5B DNA MER1_type 1 125 -53 4127 129 33 14 chr13 11318917 11319268 -90553901 - L1MB3 LINE L1 -1 6182 5839 2173 114 0 29 chr13 11319268 11319583 -90553586 - AluSp SINE Alu -7 306 1 4127 129 33 14 chr13 11319583 11319923 -90553246 - L1MB3 LINE L1 -344 5839 5478 212 294 81 59 chr13 11319965 11320101 -90553068 + MER5A DNA MER1_type 1 139 -50 378 0 0 0 chr13 11320101 11320143 -90553026 + (TG)n Simple_repeat Simple_repeat 1 42 0 1791 144 33 0 chr13 11320145 11320415 -90552754 - AluJo SINE Alu -33 279 1 937 236 68 84 chr13 11321169 11321623 -90551546 - MER39 LTR ERV1 0 707 261 225 279 117 18 chr13 11321600 11321711 -90551458 - MER34 LTR ERV1 -420 122 1 * 1814 147 17 13 chr13 11321786 11322085 -90551084 - AluJo SINE Alu -12 300 1 4308 80 5 0 chr13 11322540 11323091 -90550078 - MER41A LTR ERV1 0 554 1 297 286 20 10 chr13 11323757 11323855 -90549314 - MER5A DNA MER1_type -80 109 11 2227 105 20 0 chr13 11324167 11324461 -90548708 - AluSx SINE Alu -12 300 1 1327 192 65 73 chr13 11325066 11325436 -90547733 - MER93b LTR ERV1 0 373 7 2319 97 0 0 chr13 11325446 11325735 -90547434 - AluSq SINE Alu -24 289 1 659 200 200 0 chr13 11325954 11326119 -90547050 + MSTB1 LTR MaLR 1 198 -259 333 0 0 0 chr13 11326129 11326166 -90547003 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 566 191 0 0 chr13 11326179 11326273 -90546896 - FLAM_A SINE Alu -36 106 13 1021 178 44 40 chr13 11326273 11326498 -90546671 + MSTB1 LTR MaLR 170 395 -37 413 264 89 72 chr13 11326555 11326815 -90546354 + MLT1I LTR MaLR 102 369 -40 180 0 0 0 chr13 11326815 11326835 -90546334 + (TG)n Simple_repeat Simple_repeat 2 21 0 413 264 89 72 chr13 11326835 11326866 -90546303 + MLT1I LTR MaLR 369 398 -11 1402 171 0 17 chr13 11327742 11327981 -90545188 + AluJb SINE Alu 76 310 -2 667 283 57 9 chr13 11328051 11328281 -90544888 + MIR SINE MIR 4 244 -18 544 247 19 13 chr13 11328359 11328517 -90544652 + MIR SINE MIR 84 242 -20 1069 170 0 66 chr13 11329390 11329425 -90543744 + AluJo SINE Alu 87 123 -189 2252 113 0 3 chr13 11329425 11329726 -90543443 - AluSx SINE Alu -12 300 1 1069 170 0 66 chr13 11329726 11329931 -90543238 + AluJo SINE Alu 123 311 -1 754 126 15 7 chr13 11329931 11330066 -90543103 + GA-rich Low_complexity Low_complexity 1 136 0 609 126 42 14 chr13 11330102 11330245 -90542924 + GA-rich Low_complexity Low_complexity 2 148 0 2921 143 10 8 chr13 11330560 11331041 -90542128 + MER31A LTR ERV1 4 485 0 29 0 0 0 chr13 11332401 11332430 -90540739 + AT_rich Low_complexity Low_complexity 1 29 0 1317 117 44 19 chr13 11332544 11332750 -90540419 + AluSg/x SINE Alu 83 293 -19 1250 191 23 27 chr13 11333129 11333391 -90539778 + AluJo SINE Alu 42 302 -10 236 119 24 24 chr13 11333598 11333640 -90539529 - Alu SINE Alu -257 43 2 1633 208 15 43 chr13 11333642 11334041 -90539128 - L1MB3 LINE L1 -43 6140 5753 732 193 34 2 chr13 11334035 11334221 -90538948 - L1P5 LINE L1 -698 5458 5258 * 371 156 0 26 chr13 11335241 11335318 -90537851 + L1MA7 LINE L1 6214 6288 -3 2149 125 36 31 chr13 11335352 11335711 -90537458 + THE1B LTR MaLR 2 362 -2 769 263 35 26 chr13 11336283 11336515 -90536654 - MIR SINE MIR -12 250 17 255 241 0 0 chr13 11336548 11336602 -90536567 - L2 LINE L2 0 3272 3219 271 350 110 28 chr13 11337417 11337808 -90535361 - L2 LINE L2 -339 2975 2553 214 380 25 8 chr13 11339286 11339407 -90533762 + MIR SINE MIR 20 142 -66 1722 191 0 28 chr13 11339549 11339869 -90533300 - AluJo SINE Alu -1 311 1 293 329 106 56 chr13 11341254 11341698 -90531471 - L2 LINE L2 0 3272 2807 550 288 115 71 chr13 11342072 11342482 -90530687 + MLT1K LTR MaLR 3 430 -158 1752 109 0 0 chr13 11343136 11343365 -90529804 - AluSg/x SINE Alu -16 296 68 183 318 45 0 chr13 11343579 11343645 -90529524 - MIR SINE MIR -118 144 76 1809 124 69 0 chr13 11344240 11344515 -90528654 + AluSx SINE Alu 3 296 -16 1907 153 37 3 chr13 11344637 11344937 -90528232 - AluSx SINE Alu -2 310 1 411 21 0 0 chr13 11345018 11345066 -90528103 + (CA)n Simple_repeat Simple_repeat 1 48 0 1706 166 28 7 chr13 11345334 11345623 -90527546 - AluJo SINE Alu -15 297 3 1809 179 7 0 chr13 11346150 11346446 -90526723 + AluJb SINE Alu 4 301 -11 821 184 92 0 chr13 11347888 11348051 -90525118 - MER45A DNA AcHobo 0 178 1 21 0 0 0 chr13 11348531 11348552 -90524617 + AT_rich Low_complexity Low_complexity 1 21 0 2233 123 3 0 chr13 11349705 11350014 -90523155 + AluSp SINE Alu 1 310 -3 325 310 18 9 chr13 11350355 11350468 -90522701 - L2 LINE L2 -182 3090 2977 1024 150 0 0 chr13 11350726 11350873 -90522296 + AluSg/x SINE Alu 145 291 -19 261 364 71 0 chr13 11350947 11351172 -90521997 - L2 LINE L2 -636 2678 2438 352 282 48 8 chr13 11351309 11351433 -90521736 - L2 LINE L2 -1362 1952 1824 198 364 61 45 chr13 11351913 11352045 -90521124 + L2 LINE L2 3139 3272 0 352 253 132 66 chr13 11352108 11352488 -90520681 - L2 LINE L2 -1605 1709 1305 1198 250 99 97 chr13 11352646 11352887 -90520282 - MER45C DNA AcHobo -304 649 410 1446 182 124 30 chr13 11352887 11353249 -90519920 + MSTD LTR MaLR 1 396 0 1198 250 99 97 chr13 11353249 11353655 -90519514 - MER45C DNA AcHobo -543 410 1 210 143 0 0 chr13 11353729 11353764 -90519405 + (T)n Simple_repeat Simple_repeat 1 35 0 305 313 8 45 chr13 11353800 11353934 -90519235 + L2 LINE L2 2927 3055 -217 2213 119 0 0 chr13 11354587 11354880 -90518289 - AluSx SINE Alu -15 297 5 5627 116 13 14 chr13 11354895 11355734 -90517435 - L1PA15 LINE L1 0 6165 5328 754 233 56 11 chr13 11355759 11355939 -90517230 + MER5A DNA MER1_type 1 188 -1 367 279 29 7 chr13 11356003 11356139 -90517030 + L1MDa LINE L1 2444 2582 -3958 357 188 0 0 chr13 11356162 11356231 -90516938 + L1MA9 LINE L1 6239 6307 -5 2146 109 0 0 chr13 11358374 11358704 -90514465 + AluY SINE Alu 1 330 0 209 217 43 0 chr13 11359570 11359616 -90513553 + L2 LINE L2 3246 3293 -20 1239 159 5 10 chr13 11360135 11360342 -90512827 + AluJo SINE Alu 85 290 -22 918 56 0 0 chr13 11361357 11361482 -90511687 + (TTC)n Simple_repeat Simple_repeat 2 126 0 1866 149 0 43 chr13 11361484 11361785 -90511384 - AluJo SINE Alu -24 288 1 389 279 90 71 chr13 11362282 11362605 -90510564 + L1ME LINE L1 5264 5592 -529 2225 98 3 3 chr13 11362875 11363170 -90509999 - AluSp SINE Alu -12 301 7 1214 122 22 0 chr13 11363274 11363436 -90509733 - AluSc SINE Alu -12 297 129 2387 79 20 0 chr13 11363436 11363741 -90509428 - AluY SINE Alu 0 311 1 1214 122 22 0 chr13 11363741 11363759 -90509410 - AluSc SINE Alu -180 129 113 324 289 159 36 chr13 11363764 11364230 -90508939 - L2 LINE L2 -35 3278 2737 351 290 0 0 chr13 11364364 11364457 -90508712 - MIR SINE MIR -83 125 33 1731 157 3 63 chr13 11365302 11365620 -90507549 - AluJo SINE Alu -13 299 1 1127 129 0 38 chr13 11365648 11365857 -90507312 + L1MB2 LINE L1 5924 6124 -47 1436 139 0 39 chr13 11365857 11366087 -90507082 + AluSg/x SINE Alu 80 300 -10 891 308 80 13 chr13 11366350 11366802 -90506367 + L2 LINE L2 1840 2321 -993 2229 98 7 0 chr13 11366961 11367246 -90505923 - AluSq SINE Alu -26 287 1 1334 228 37 67 chr13 11367320 11367812 -90505357 + L1MC5 LINE L1 6752 7228 -733 * 4355 168 31 46 chr13 11367802 11368976 -90504193 + L1MB3 LINE L1 5015 6160 -23 987 160 83 73 chr13 11369028 11369266 -90503903 + L1MC5 LINE L1 7276 7519 -442 2294 109 3 0 chr13 11369266 11369578 -90503591 - AluSp SINE Alu 0 313 1 987 160 83 73 chr13 11369578 11369652 -90503517 + L1MC5 LINE L1 7519 7591 -370 662 223 73 10 chr13 11369692 11369898 -90503271 + L1MC5 LINE L1 7679 7897 -64 1757 179 7 3 chr13 11371045 11371352 -90501817 - AluJo SINE Alu -4 308 1 205 312 196 0 chr13 11371660 11371798 -90501371 - MIR SINE MIR -49 213 49 23 33 0 0 chr13 11372130 11372160 -90501009 + AT_rich Low_complexity Low_complexity 1 30 0 2172 192 65 9 chr13 11372300 11372771 -90500398 - MLT1F LTR MaLR -1 541 1 381 257 53 43 chr13 11374282 11374695 -90498474 + MLT1H LTR MaLR 20 517 -32 262 146 164 0 chr13 11375501 11375556 -90497613 + MIR SINE MIR 83 146 -116 962 255 56 19 chr13 11377139 11377406 -90495763 + MLT1J2 LTR MaLR 1 277 -173 611 265 61 5 chr13 11377442 11377638 -90495531 + MLT1J2 LTR MaLR 244 450 0 4720 163 29 38 chr13 11377835 11378999 -90494170 + L1MB8 LINE L1 4872 6045 -133 4507 44 4 2 chr13 11378999 11379542 -90493627 - L1PA4 LINE L1 0 6155 5612 2396 96 3 0 chr13 11379542 11379845 -90493324 - AluSx SINE Alu -8 304 1 4720 163 29 38 chr13 11379845 11379991 -90493178 + L1MB8 LINE L1 6043 6174 -4 268 173 0 19 chr13 11380229 11380281 -90492888 + MER63 DNA MER1_type 1 51 -159 * 1351 184 94 3 chr13 11380279 11380567 -90492602 + MER63 DNA MER1_type 748 1061 0 204 306 185 9 chr13 11381330 11381438 -90491731 - L2 LINE L2 -3 3269 3143 189 143 24 24 chr13 11381536 11381578 -90491591 + L2 LINE L2 3230 3271 -1 185 154 103 0 chr13 11382622 11382661 -90490508 - L3 LINE CR1 -1 1576 1534 252 0 0 0 chr13 11382810 11382838 -90490331 + (TTAAA)n Simple_repeat Simple_repeat 4 31 0 321 272 49 0 chr13 11382841 11382922 -90490247 + LTR33 LTR ERVL 17 101 -420 629 170 65 26 chr13 11382922 11383075 -90490094 + MER5A DNA MER1_type 7 165 -24 543 314 77 23 chr13 11383086 11383474 -90489695 + LTR33 LTR ERVL 86 494 -27 4309 140 28 17 chr13 11383890 11384642 -90488527 - L1MB3 LINE L1 -1 6182 5423 186 280 42 93 chr13 11384925 11385043 -90488126 - MIR SINE MIR -81 127 16 332 287 131 0 chr13 11386668 11386790 -90486379 + MIR SINE MIR 11 148 -114 216 366 0 0 chr13 11387186 11387268 -90485901 - L2 LINE L2 -37 3235 3154 453 358 12 0 chr13 11387288 11387453 -90485716 + L2 LINE L2 2862 3028 -285 2038 115 11 7 chr13 11388464 11388751 -90484418 + AluSx SINE Alu 1 288 -24 181 148 19 19 chr13 11388975 11389029 -90484140 + (TA)n Simple_repeat Simple_repeat 2 55 0 1970 121 37 0 chr13 11389065 11389337 -90483832 - AluSx SINE Alu -30 282 1 691 251 11 6 chr13 11389592 11389767 -90483402 - MER5B DNA MER1_type -2 176 1 22 35 0 0 chr13 11389889 11389918 -90483251 + AT_rich Low_complexity Low_complexity 1 29 0 5360 123 15 15 chr13 11390042 11390543 -90482626 - L1PA15 LINE L1 0 6165 5662 1911 72 8 0 chr13 11390543 11390778 -90482391 - AluSg SINE Alu -13 297 61 5360 123 15 15 chr13 11390778 11391088 -90482081 - L1PA15 LINE L1 -502 5663 5354 358 215 123 23 chr13 11391096 11391226 -90481943 - MIR SINE MIR -118 144 2 194 279 33 0 chr13 11391745 11391806 -90481363 + MIR SINE MIR 127 189 -73 1851 88 4 0 chr13 11392094 11392332 -90480837 - AluSx SINE Alu -10 302 64 2110 159 8 8 chr13 11393632 11393997 -90479172 - L1PA16 LINE L1 0 6166 5802 181 275 8 100 chr13 11394007 11394127 -90479042 - MIR SINE MIR -139 123 15 424 185 148 19 chr13 11395119 11395227 -90477942 + FLAM_A SINE Alu 2 123 -10 357 240 58 10 chr13 11395487 11395591 -90477578 - MIR SINE MIR -54 208 100 2099 180 23 2 chr13 11395660 11396055 -90477114 - L1MB2 LINE L1 0 6171 5769 1551 183 6 45 chr13 11397026 11397338 -90475831 + AluJb SINE Alu 1 300 -12 855 122 0 68 chr13 11397754 11397901 -90475268 - FLAM_C SINE Alu -6 137 1 3610 133 122 47 chr13 11398139 11398869 -90474300 + LTR1 LTR ERV1 1 785 0 2325 123 0 0 chr13 11399946 11400256 -90472913 + AluSx SINE Alu 1 310 -2 1687 146 0 19 chr13 11401815 11402083 -90471086 + AluJo SINE Alu 34 296 -16 213 189 0 0 chr13 11402322 11402359 -90470810 - MIR SINE MIR -70 192 156 21 57 0 0 chr13 11402477 11402512 -90470657 + AT_rich Low_complexity Low_complexity 1 35 0 423 277 36 15 chr13 11402851 11402988 -90470181 - MIR SINE MIR -119 143 4 480 58 207 69 chr13 11403941 11404028 -90469141 + HY3 scRNA scRNA 1 99 -2 2302 113 0 0 chr13 11404030 11404331 -90468838 - AluSq SINE Alu -12 301 1 708 319 42 7 chr13 11404559 11404697 -90468472 - LTR16C LTR ERVL -6 485 353 2512 83 0 0 chr13 11404697 11405009 -90468160 + AluSx SINE Alu 1 312 0 708 319 42 7 chr13 11405009 11405158 -90468011 - LTR16C LTR ERVL -138 353 188 337 199 139 60 chr13 11405284 11405435 -90467734 - L1ME4a LINE L1 -229 5892 5730 657 243 83 17 chr13 11406189 11406370 -90466799 - MIR SINE MIR -47 215 23 2371 96 3 6 chr13 11406625 11406939 -90466230 - AluSq SINE Alu 0 313 1 634 168 23 30 chr13 11407436 11407567 -90465602 - FLAM_A SINE Alu 0 133 4 207 100 0 0 chr13 11407654 11407684 -90465485 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 334 267 22 0 chr13 11407730 11407820 -90465349 - L1MC4 LINE L1 -1337 6705 6614 582 228 0 0 chr13 11407825 11408137 -90465032 + (TA)n Simple_repeat Simple_repeat 1 312 0 319 308 0 0 chr13 11408138 11408229 -90464940 - L1MC4 LINE L1 -1339 6703 6613 234 290 14 14 chr13 11408497 11408566 -90464603 + L3 LINE CR1 327 395 -1182 472 240 106 39 chr13 11408700 11408879 -90464290 + L3 LINE CR1 1206 1396 -181 672 184 22 7 chr13 11409460 11409596 -90463573 + L1MC2 LINE L1 6082 6219 -125 890 163 34 34 chr13 11409596 11409774 -90463395 + AluJo SINE Alu 121 298 -14 569 210 17 17 chr13 11409783 11409902 -90463267 + L1MC2 LINE L1 6226 6344 0 306 359 84 18 chr13 11410062 11410229 -90462940 + L3 LINE CR1 1398 1575 -2 1933 139 0 37 chr13 11411484 11411779 -90461390 + AluJo SINE Alu 1 284 -28 204 67 0 0 chr13 11411779 11411809 -90461360 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 11412197 11412218 -90460951 + AT_rich Low_complexity Low_complexity 1 21 0 908 137 0 0 chr13 11412716 11412840 -90460329 - FLAM_C SINE Alu -17 126 3 525 272 147 5 chr13 11413345 11413536 -90459633 + MIR SINE MIR 2 219 -43 2187 114 10 0 chr13 11414253 11414550 -90458619 + AluSx SINE Alu 1 300 -12 22 70 0 0 chr13 11414694 11414737 -90458432 + AT_rich Low_complexity Low_complexity 1 43 0 1980 157 14 0 chr13 11415971 11416265 -90456904 - AluJo SINE Alu -14 298 1 247 390 19 0 chr13 11416952 11417057 -90456112 + MIR SINE MIR 24 130 -78 2368 72 6 28 chr13 11417211 11417531 -90455638 - AluSq SINE Alu 0 313 1 511 280 89 54 chr13 11417813 11418061 -90455108 + L2 LINE L2 2192 2430 -884 1702 155 56 25 chr13 11418061 11418345 -90454824 + AluJo SINE Alu 1 293 -19 2444 68 7 0 chr13 11418349 11418658 -90454511 + AluY SINE Alu 1 311 0 511 280 89 54 chr13 11418658 11418718 -90454451 + L2 LINE L2 2432 2516 -798 433 308 168 22 chr13 11418804 11419210 -90453959 + L2 LINE L2 2794 3272 0 1834 164 10 3 chr13 11419312 11419611 -90453558 + AluJb SINE Alu 2 302 -10 1010 149 30 6 chr13 11419613 11419781 -90453388 + AluJo/FRAM SINE Alu 128 299 -13 1389 269 91 61 chr13 11420168 11420220 -90452949 + L1M4 LINE L1 3463 3512 -2634 1978 117 17 7 chr13 11420220 11420538 -90452631 + AluSq SINE Alu 1 313 0 1389 269 91 61 chr13 11420538 11421429 -90451740 + L1M4 LINE L1 3512 4434 -1712 715 208 8 0 chr13 11421432 11421552 -90451617 - FLAM_C SINE Alu -10 123 3 987 306 57 26 chr13 11421569 11421945 -90451224 + L1ME4a LINE L1 3588 3992 -2154 1191 265 104 19 chr13 11421945 11422360 -90450809 - MLT1J2 LTR MaLR 0 450 1 987 306 57 26 chr13 11422360 11422598 -90450571 + L1ME4a LINE L1 3992 4221 -1925 268 111 0 0 chr13 11423380 11423416 -90449753 + MLT1I LTR MaLR 370 405 -4 477 253 92 89 chr13 11423419 11423723 -90449446 - MLT1I LTR MaLR -14 395 91 2150 122 0 16 chr13 11423723 11424035 -90449134 - AluSx SINE Alu -5 307 1 1224 272 43 6 chr13 11424325 11424649 -90448520 + MLT1I LTR MaLR 74 409 0 2063 165 20 17 chr13 11424719 11425065 -90448104 + MER7A DNA MER2_type 1 345 -1 298 230 105 47 chr13 11425087 11425278 -90447891 + L1ME4a LINE L1 4457 4658 -1488 303 306 9 27 chr13 11425279 11425390 -90447779 + MIR SINE MIR 154 262 0 309 278 80 20 chr13 11425457 11425608 -90447561 + L1ME4a LINE L1 4930 5089 -1057 311 308 36 36 chr13 11425751 11425972 -90447197 + L1ME4a LINE L1 5255 5475 -2333 465 243 77 0 chr13 11427826 11427995 -90445174 + L1ME4a LINE L1 5938 6119 -2 2586 62 0 0 chr13 11429057 11429363 -90443806 - AluY SINE Alu -5 306 1 1629 155 3 44 chr13 11429649 11429946 -90443223 - AluJb SINE Alu -22 290 6 354 200 80 38 chr13 11430044 11430207 -90442962 + LTR16A LTR ERVL 1 168 -282 532 299 116 39 chr13 11430212 11430492 -90442677 + L2 LINE L2 2852 3176 -137 819 145 15 8 chr13 11430492 11430623 -90442546 - FLAM_C SINE Alu 0 133 2 532 299 116 39 chr13 11430623 11430757 -90442412 + L2 LINE L2 3176 3298 -15 321 215 65 102 chr13 11430921 11431107 -90442062 - MER97b DNA MER1_type? 0 1053 716 352 202 167 0 chr13 11431119 11431203 -90441966 - MLT1I LTR MaLR -469 98 1 * 872 179 100 22 chr13 11431203 11431408 -90441761 - MER97b DNA MER1_type? -827 226 4 2184 177 34 45 chr13 11431445 11431913 -90441256 + MLT1C LTR MaLR 1 463 -4 738 214 0 0 chr13 11432029 11432146 -90441023 + FLAM_C SINE Alu 2 118 -15 22 35 0 0 chr13 11432166 11432195 -90440974 + AT_rich Low_complexity Low_complexity 1 29 0 2448 80 3 0 chr13 11432825 11433127 -90440042 - AluSx SINE Alu -7 305 3 331 225 233 8 chr13 11434100 11434220 -90438949 + MIR SINE MIR 116 262 0 315 362 86 18 chr13 11434671 11435008 -90438161 + L2 LINE L2 2618 2977 -337 1925 160 0 19 chr13 11435067 11435380 -90437789 - AluSx SINE Alu -5 307 1 257 347 113 20 chr13 11435380 11435521 -90437648 + L2 LINE L2 3106 3263 -9 540 261 0 36 chr13 11435859 11435997 -90437172 + FLAM_A SINE Alu 1 133 0 181 271 0 43 chr13 11436033 11436103 -90437066 + L2 LINE L2 2836 2902 -412 427 258 123 31 chr13 11436305 11436468 -90436701 + MIR SINE MIR 84 261 -1 274 333 28 9 chr13 11436532 11436640 -90436529 + L2 LINE L2 3161 3270 -2 336 282 145 0 chr13 11436653 11436770 -90436399 + MIR SINE MIR 59 192 -70 321 298 145 45 chr13 11437098 11437340 -90435829 - L1M2 LINE L1 -5599 1250 985 2339 156 14 0 chr13 11438161 11438520 -90434649 + MER47A DNA MER2_type 3 366 0 292 293 95 0 chr13 11438533 11438649 -90434520 - MIR3 SINE MIR -52 156 30 208 313 94 10 chr13 11438815 11438911 -90434258 - L2 LINE L2 -647 2667 2564 1798 163 0 10 chr13 11439115 11439426 -90433743 + AluJb SINE Alu 1 308 0 314 277 0 0 chr13 11439516 11439581 -90433588 + L2 LINE L2 3242 3306 -7 23 54 0 0 chr13 11440306 11440343 -90432826 + AT_rich Low_complexity Low_complexity 1 37 0 796 291 57 0 chr13 11440786 11441033 -90432136 + MIR SINE MIR 2 262 0 2197 114 3 0 chr13 11441245 11441552 -90431617 - AluSp SINE Alu -5 308 1 197 225 75 0 chr13 11441966 11442006 -90431163 + L2 LINE L2 3214 3256 -16 469 223 25 33 chr13 11442257 11442378 -90430791 - L1ME1 LINE L1 -41 6125 6006 180 413 73 34 chr13 11442897 11443103 -90430066 - L2 LINE L2 -54 3218 3005 866 333 138 52 chr13 11443349 11444425 -90428744 + L3 LINE CR1 1 1168 -409 239 313 196 9 chr13 11444540 11444652 -90428517 + MIR SINE MIR 23 155 -107 1154 139 0 97 chr13 11444745 11444983 -90428186 + MER20 DNA MER1_type 1 215 -4 181 214 157 29 chr13 11444991 11445061 -90428108 + L2 LINE L2 3139 3217 -55 1036 131 50 0 chr13 11445186 11445346 -90427823 + FAM SINE Alu 1 168 -7 233 355 66 28 chr13 11446565 11446776 -90426393 + L2 LINE L2 1292 1510 -1804 288 177 0 32 chr13 11446777 11446839 -90426330 - L2 LINE L2 -973 2341 2282 739 308 186 35 chr13 11446868 11447311 -90425858 + L2 LINE L2 1505 1880 -1434 1489 172 0 15 chr13 11447311 11447573 -90425596 - AluJo SINE Alu -6 306 49 739 308 186 35 chr13 11447573 11447768 -90425401 + L2 LINE L2 1880 2044 -1270 1887 149 0 14 chr13 11447768 11448063 -90425106 + AluJb SINE Alu 3 293 -19 739 308 186 35 chr13 11448063 11448502 -90424667 + L2 LINE L2 2044 2746 -568 2356 89 0 0 chr13 11448706 11448998 -90424171 + AluSq SINE Alu 1 292 -21 395 258 65 52 chr13 11449107 11449262 -90423907 + MIR SINE MIR 47 203 -59 452 215 129 0 chr13 11449822 11449915 -90423254 + FLAM_A SINE Alu 1 105 -37 253 281 0 0 chr13 11450422 11450479 -90422690 - L2 LINE L2 -69 3244 3188 985 83 15 8 chr13 11450560 11450692 -90422477 + AluSq/x SINE Alu 1 133 -180 2409 85 0 0 chr13 11451015 11451310 -90421859 - AluSg SINE Alu -15 295 1 375 222 191 16 chr13 11451757 11451883 -90421286 - L2 LINE L2 -19 3294 3147 1362 224 120 19 chr13 11452057 11452473 -90420696 - LTR40b LTR ERVL -4 458 1 423 371 10 10 chr13 11452489 11452694 -90420475 - L2 LINE L2 -420 2894 2690 1601 152 27 40 chr13 11452698 11452995 -90420174 + AluJo SINE Alu 1 293 -19 871 69 9 9 chr13 11453087 11453203 -90419966 - AluSg/x SINE Alu -12 300 185 3499 145 16 23 chr13 11453330 11453986 -90419183 - L1MB3 LINE L1 -330 5853 5203 197 244 0 0 chr13 11454024 11454065 -90419104 + MER5A DNA MER1_type 124 164 -25 305 307 108 48 chr13 11454212 11454590 -90418579 + L2 LINE L2 1987 2387 -927 917 159 90 16 chr13 11454900 11455089 -90418080 + MER20 DNA MER1_type 16 218 -1 1019 202 88 86 chr13 11455122 11455409 -90417760 + LTR16A1 LTR ERVL 26 316 -141 1566 194 80 14 chr13 11455409 11455760 -90417409 + MLT1A2 LTR MaLR 1 374 0 1019 202 88 86 chr13 11455760 11455903 -90417266 + LTR16A1 LTR ERVL 316 457 0 2240 119 61 3 chr13 11456214 11456558 -90416611 - THE1B LTR MaLR 0 364 1 2502 85 0 0 chr13 11456950 11457256 -90415913 - AluSx SINE Alu -6 306 1 430 282 122 0 chr13 11457435 11457591 -90415578 + MIR SINE MIR 12 186 -76 330 293 49 16 chr13 11457878 11458001 -90415168 - L2 LINE L2 -227 3045 2919 23 0 0 0 chr13 11458157 11458180 -90414989 + AT_rich Low_complexity Low_complexity 1 23 0 207 302 115 62 chr13 11458180 11458372 -90414797 - L2 LINE L2 -449 2865 2664 2212 105 7 3 chr13 11458627 11458921 -90414248 - AluSx SINE Alu -17 295 1 899 311 78 52 chr13 11459474 11459860 -90413309 - L2 LINE L2 -609 2705 2331 1908 162 25 11 chr13 11459860 11460218 -90412951 + L1MA4 LINE L1 5937 6299 -1 899 311 78 52 chr13 11460218 11460780 -90412389 - L2 LINE L2 -983 2331 1732 441 288 120 11 chr13 11460795 11460979 -90412190 + MER63A DNA MER1_type 5 208 -2 233 97 0 0 chr13 11461341 11461372 -90411797 + MSTB LTR MaLR 1 31 -395 1467 157 122 8 chr13 11462812 11463074 -90410095 - AluJo SINE Alu -16 296 5 204 260 0 0 chr13 11463250 11463300 -90409869 - L2 LINE L2 0 3272 3223 191 167 24 0 chr13 11463821 11463863 -90409306 + (TTA)n Simple_repeat Simple_repeat 3 45 0 331 310 103 6 chr13 11463870 11464044 -90409125 - L2 LINE L2 -16 3297 3107 236 284 12 12 chr13 11464047 11464128 -90409041 + L1MEd LINE L1 4 84 -6035 1266 110 0 0 chr13 11464191 11464364 -90408805 + AluSg/x SINE Alu 136 308 -2 1327 172 4 63 chr13 11465311 11465579 -90407590 - AluJo SINE Alu -22 290 39 301 339 65 0 chr13 11465851 11465975 -90407194 + L2 LINE L2 3140 3271 -1 1219 122 22 100 chr13 11466675 11466904 -90406265 - AluJo SINE Alu -23 289 79 220 214 22 67 chr13 11467157 11467246 -90405923 + T-rich Low_complexity Low_complexity 2 86 0 635 158 0 22 chr13 11467352 11467536 -90405633 + (CA)n Simple_repeat Simple_repeat 1 180 0 415 195 23 6 chr13 11467547 11467721 -90405448 + (CA)n Simple_repeat Simple_repeat 1 177 0 202 234 106 64 chr13 11468438 11468532 -90404637 + L2 LINE L2 3148 3245 -27 180 111 0 0 chr13 11469342 11469369 -90403800 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1471 113 5 0 chr13 11469411 11469614 -90403555 - AluSp SINE Alu -16 297 94 1606 152 40 14 chr13 11471655 11471960 -90401209 - AluJb SINE Alu 0 312 1 1808 168 42 0 chr13 11472025 11472311 -90400858 - AluSx SINE Alu -14 298 1 1299 150 0 141 chr13 11472376 11472736 -90400433 - AluJb SINE Alu 0 318 5 1516 205 16 44 chr13 11473204 11473570 -90399599 - MLT1A1 LTR MaLR 0 365 10 192 40 0 0 chr13 11473767 11473792 -90399377 + (CA)n Simple_repeat Simple_repeat 1 25 0 340 314 17 0 chr13 11473994 11474112 -90399057 - MIR SINE MIR -90 172 53 1400 157 12 0 chr13 11474433 11474681 -90398488 + L1MA8 LINE L1 6037 6287 -4 2273 99 23 0 chr13 11475156 11475458 -90397711 - AluSc SINE Alu 0 309 1 636 110 0 11 chr13 11475458 11475549 -90397620 - L1MC1 LINE L1 -10 6323 6234 287 333 10 10 chr13 11476044 11476140 -90397029 + MIR SINE MIR 41 136 -72 878 145 11 102 chr13 11476836 11477022 -90396147 - MER45A DNA AcHobo -5 173 5 2266 125 0 0 chr13 11477136 11477448 -90395721 - AluSx SINE Alu 0 312 1 595 243 38 19 chr13 11477696 11477906 -90395263 + L1 LINE L1 5148 5361 -785 22 0 0 0 chr13 11478041 11478063 -90395106 + AT_rich Low_complexity Low_complexity 1 22 0 2663 40 0 0 chr13 11478096 11478393 -90394776 - AluY SINE Alu -14 297 1 22 35 0 0 chr13 11479052 11479081 -90394088 + AT_rich Low_complexity Low_complexity 1 29 0 309 238 10 0 chr13 11479147 11479248 -90393921 + L1MA4 LINE L1 6196 6297 -3 339 168 106 9 chr13 11480100 11480213 -90392956 - MIR3 SINE MIR -1 207 84 771 274 37 4 chr13 11480500 11480741 -90392428 + MIR SINE MIR 10 258 -4 1820 160 17 3 chr13 11482060 11482353 -90390816 - AluJo SINE Alu -15 297 1 1281 123 39 15 chr13 11483113 11483316 -90389853 + AluJo SINE Alu 83 290 -22 832 264 130 91 chr13 11483402 11483856 -90389313 - MLT1L LTR MaLR 0 615 131 462 36 0 0 chr13 11483856 11483912 -90389257 + (CA)n Simple_repeat Simple_repeat 2 57 0 832 264 130 91 chr13 11483912 11484049 -90389120 - MLT1L LTR MaLR -484 131 1 330 208 78 26 chr13 11484221 11484298 -90388871 + MIR SINE MIR 73 153 -55 208 245 20 0 chr13 11484463 11484512 -90388657 - L2 LINE L2 0 3272 3223 334 203 153 17 chr13 11484543 11484661 -90388508 + MLT1J LTR MaLR 336 469 -42 1756 166 75 51 chr13 11484706 11484784 -90388385 + MLT1B LTR MaLR 1 76 -314 2281 111 3 0 chr13 11484784 11485090 -90388079 - AluSx SINE Alu -5 307 1 1756 166 75 51 chr13 11485090 11485114 -90388055 + MLT1B LTR MaLR 76 98 -292 1404 186 86 43 chr13 11485114 11485319 -90387850 - MLT1A1 LTR MaLR -1 364 135 2257 95 3 0 chr13 11485319 11485638 -90387531 - AluSq SINE Alu 0 320 1 1404 186 86 43 chr13 11485638 11485780 -90387389 - MLT1A1 LTR MaLR -230 135 1 1756 166 75 51 chr13 11485780 11486050 -90387119 + MLT1B LTR MaLR 98 383 -7 22 35 0 0 chr13 11486967 11486996 -90386173 + AT_rich Low_complexity Low_complexity 1 29 0 511 148 23 23 chr13 11487172 11487300 -90385869 + GA-rich Low_complexity Low_complexity 1 128 0 652 156 63 1 chr13 11487487 11487616 -90385553 + L1MB8 LINE L1 5730 5873 -295 734 205 0 58 chr13 11487620 11487776 -90385393 + MLT1B LTR MaLR 192 338 -52 1663 141 4 0 chr13 11487797 11488031 -90385138 + AluSx SINE Alu 1 235 -77 1533 178 7 11 chr13 11488987 11489286 -90383883 + AluJo SINE Alu 11 308 0 180 0 0 0 chr13 11490248 11490268 -90382901 + (A)n Simple_repeat Simple_repeat 1 20 0 246 208 0 0 chr13 11491508 11491556 -90381613 - MER5B DNA MER1_type 0 178 131 1764 154 0 40 chr13 11491598 11491897 -90381272 - AluJo SINE Alu -25 287 1 4374 57 21 4 chr13 11491916 11492475 -90380694 + L1P3 LINE L1 1068 1636 -4825 472 153 27 121 chr13 11493154 11493193 -90379976 - L1ME1 LINE L1 0 6334 6293 626 165 55 31 chr13 11493193 11493320 -90379849 + FLAM_A SINE Alu 1 130 -3 472 153 27 121 chr13 11493320 11493409 -90379760 - L1ME1 LINE L1 -41 6293 6058 230 154 0 0 chr13 11493409 11493448 -90379721 - MER3 DNA MER1_type -160 49 11 2498 204 8 20 chr13 11493448 11493944 -90379225 - L1ME1 LINE L1 -148 6018 5529 2452 67 0 0 chr13 11494108 11494405 -90378764 + AluY SINE Alu 1 297 -14 229 221 21 105 chr13 11494879 11494974 -90378195 - L3 LINE CR1 -289 1288 1202 2137 42 109 14 chr13 11495415 11495699 -90377470 + AluY SINE Alu 1 311 0 3521 214 94 70 chr13 11495870 11497348 -90375821 + MER109 Unknown Unknown 7 1412 -1020 237 275 49 21 chr13 11497631 11497773 -90375396 + (CCCG)n Simple_repeat Simple_repeat 4 149 0 30 45 0 0 chr13 11497972 11498016 -90375153 + GC_rich Low_complexity Low_complexity 1 44 0 1825 132 11 14 chr13 11498887 11499167 -90374002 + AluJo SINE Alu 4 282 -30 258 284 0 0 chr13 11499857 11499924 -90373245 + MER52A LTR ERV1 1 67 -1688 848 213 58 45 chr13 11500120 11500396 -90372773 + MER52A LTR ERV1 26 357 -921 253 246 0 31 chr13 11500645 11500710 -90372459 + MLT1I LTR MaLR 345 407 -2 11423 188 79 51 chr13 11500794 11501937 -90371232 - L1MCa LINE L1 -2557 3869 2759 1874 129 80 0 chr13 11501937 11502223 -90370946 - AluSx SINE Alu -1 311 3 11423 188 79 51 chr13 11502223 11502805 -90370364 - L1MCa LINE L1 -3667 2759 2195 1671 96 0 0 chr13 11502805 11503013 -90370156 - AluSg/x SINE Alu -18 294 87 11423 188 79 51 chr13 11503013 11504040 -90369129 - L1MCa LINE L1 -4231 2195 1198 1880 125 0 11 chr13 11504040 11504304 -90368865 + AluSx SINE Alu 39 299 -13 11423 188 79 51 chr13 11504304 11504388 -90368781 - L1MCa LINE L1 -5228 1198 1118 1633 121 0 14 chr13 11504388 11504611 -90368558 - AluSg SINE Alu -84 226 7 11423 188 79 51 chr13 11504611 11504863 -90368306 - L1MCa LINE L1 -5308 1118 874 1973 91 80 4 chr13 11504863 11505137 -90368032 - AluSc SINE Alu -14 295 1 11423 188 79 51 chr13 11505137 11505770 -90367399 - L1MCa LINE L1 -5552 874 32 676 193 22 7 chr13 11505864 11505999 -90367170 + AluJb SINE Alu 117 253 -59 4718 75 5 34 chr13 11505999 11506473 -90366696 + L1PB1 LINE L1 5502 5952 -199 2099 104 7 14 chr13 11506473 11506762 -90366407 + AluSx SINE Alu 4 290 -22 4718 75 5 34 chr13 11506762 11506956 -90366213 + L1PB1 LINE L1 5952 6150 -1 1786 252 85 41 chr13 11506979 11507885 -90365284 + HAL1b LINE L1 62 1007 -341 310 273 23 76 chr13 11507929 11508101 -90365068 + HAL1b LINE L1 1115 1277 -71 829 155 8 0 chr13 11508115 11508244 -90364925 + FLAM_C SINE Alu 1 130 -3 1200 180 5 5 chr13 11508474 11508696 -90364473 - AluJb SINE Alu -3 309 88 926 149 0 12 chr13 11508701 11508869 -90364300 - L1MB4 LINE L1 0 6180 6015 2380 98 0 0 chr13 11510007 11510313 -90362856 - AluSc SINE Alu -2 307 2 330 26 0 0 chr13 11510313 11510352 -90362817 + (TA)n Simple_repeat Simple_repeat 2 40 0 2135 134 0 7 chr13 11510532 11510838 -90362331 + AluSx SINE Alu 1 304 -8 261 0 0 0 chr13 11510838 11510867 -90362302 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 270 0 0 0 chr13 11510866 11510896 -90362273 + (CA)n Simple_repeat Simple_repeat 2 31 0 336 227 227 16 chr13 11510901 11511029 -90362140 - L2 LINE L2 0 3313 3159 2403 164 216 12 chr13 11511042 11511641 -90361528 - Tigger7 DNA MER2_type -9 2478 2 291 236 82 50 chr13 11511770 11511935 -90361234 - L1MC4a LINE L1 -199 5922 5750 219 228 70 0 chr13 11512587 11512644 -90360525 - MER5A DNA MER1_type -128 61 1 445 285 68 98 chr13 11512710 11512945 -90360224 + MIR SINE MIR 4 231 -31 360 324 49 14 chr13 11513005 11513147 -90360022 + MIR3 SINE MIR 7 153 -55 27 49 0 0 chr13 11513236 11513277 -90359892 + AT_rich Low_complexity Low_complexity 1 41 0 309 214 60 12 chr13 11513520 11513604 -90359565 + CT-rich Low_complexity Low_complexity 4 91 0 925 175 26 52 chr13 11513606 11513800 -90359369 - AluJo SINE Alu -38 274 86 2430 78 3 0 chr13 11513882 11514177 -90358992 - AluSp SINE Alu -17 296 1 2199 114 3 0 chr13 11514628 11514926 -90358243 + AluSx SINE Alu 1 299 -13 572 269 16 65 chr13 11517381 11517567 -90355602 + MER5B DNA MER1_type 1 177 -1 445 302 89 12 chr13 11518266 11518435 -90354734 + MER5A DNA MER1_type 8 189 0 840 214 66 6 chr13 11518922 11519104 -90354065 - MER3 DNA MER1_type -16 193 1 345 232 56 16 chr13 11519761 11519886 -90353283 + L1MC5 LINE L1 7796 7925 -36 684 244 28 11 chr13 11519926 11520106 -90353063 - MIR SINE MIR -6 256 74 373 310 131 12 chr13 11520193 11520438 -90352731 - L2 LINE L2 0 3313 3040 2133 120 0 3 chr13 11520788 11521079 -90352090 + AluSc SINE Alu 1 290 -19 2384 88 3 0 chr13 11521679 11521984 -90351185 - AluSx SINE Alu -6 306 1 2356 87 3 16 chr13 11522889 11523198 -90349971 - AluSx SINE Alu -7 305 1 275 188 24 24 chr13 11523579 11523664 -90349505 - HAL1 LINE L1 -121 2386 2302 927 216 123 47 chr13 11523765 11523999 -90349170 - HAL1 LINE L1 -538 1969 1696 258 32 0 0 chr13 11523999 11524030 -90349139 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 927 216 123 47 chr13 11524030 11524160 -90349009 - HAL1 LINE L1 -811 1696 1577 2199 120 0 0 chr13 11524171 11524471 -90348698 - AluSx SINE Alu -12 300 1 25 31 0 0 chr13 11524474 11524506 -90348663 + AT_rich Low_complexity Low_complexity 1 32 0 1028 252 17 4 chr13 11524767 11524997 -90348172 - MIR SINE MIR -24 238 6 710 267 146 26 chr13 11525002 11525479 -90347690 - L1MC4a LINE L1 -667 5507 5278 341 336 56 48 chr13 11525572 11525822 -90347347 - L1MC4a LINE L1 -1013 5133 4882 270 302 122 26 chr13 11525952 11526466 -90346703 - L1MC4a LINE L1 -1487 4659 4095 1682 252 180 68 chr13 11526466 11526556 -90346613 - HAL1 LINE L1 -945 1562 1483 243 0 0 0 chr13 11526556 11526583 -90346586 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1682 252 180 68 chr13 11526583 11527078 -90346091 - HAL1 LINE L1 -1024 1483 1045 183 80 0 0 chr13 11527078 11527103 -90346066 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1682 252 180 68 chr13 11527103 11527921 -90345248 - HAL1 LINE L1 -1462 1045 1 184 280 129 30 chr13 11527925 11528057 -90345112 + L2 LINE L2 2689 2833 -481 227 360 0 9 chr13 11528087 11528198 -90344971 + CT-rich Low_complexity Low_complexity 1 110 0 1939 121 29 0 chr13 11529441 11529713 -90343456 - AluSx SINE Alu -32 280 1 2546 47 14 0 chr13 11529950 11530247 -90342922 - AluY SINE Alu -10 301 1 1491 183 32 18 chr13 11530406 11530691 -90342478 - AluJb SINE Alu -22 290 2 2311 76 3 7 chr13 11530721 11531022 -90342147 + AluY SINE Alu 1 300 -11 488 252 18 0 chr13 11531149 11531260 -90341909 + MER58 DNA MER1_type 1 113 -102 300 228 0 0 chr13 11531263 11531320 -90341849 + MER58 DNA MER1_type 2364 2420 0 2234 101 3 3 chr13 11531521 11531818 -90341351 + AluSp SINE Alu 1 297 -16 2333 81 7 10 chr13 11532669 11532978 -90340191 + AluSq SINE Alu 1 308 -5 28 79 0 0 chr13 11533062 11533125 -90340044 + AT_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr13 11533405 11533435 -90339734 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr13 11534509 11534538 -90338631 + (T)n Simple_repeat Simple_repeat 1 29 0 214 279 0 76 chr13 11536585 11536664 -90336505 - L2 LINE L2 0 3313 3241 675 270 204 18 chr13 11536765 11536966 -90336203 - L2 LINE L2 -313 3000 2838 2296 83 3 0 chr13 11536966 11537255 -90335914 + AluY SINE Alu 2 291 -20 675 270 204 18 chr13 11537255 11537402 -90335767 - L2 LINE L2 -475 2838 2593 2210 101 10 0 chr13 11537534 11537830 -90335339 + AluSx SINE Alu 1 299 -13 26 30 0 0 chr13 11538683 11538716 -90334453 + AT_rich Low_complexity Low_complexity 1 33 0 2001 136 13 13 chr13 11538970 11539271 -90333898 + AluJo SINE Alu 1 301 -11 534 262 52 62 chr13 11539470 11539680 -90333489 - MIR SINE MIR -18 244 37 289 222 10 81 chr13 11539986 11540085 -90333084 + L1 LINE L1 4108 4199 -1947 419 309 92 43 chr13 11540118 11540445 -90332724 + L1 LINE L1 4260 4602 -1544 265 260 0 13 chr13 11540602 11540679 -90332490 + L1 LINE L1 4751 4826 -1320 21 0 0 0 chr13 11540741 11540762 -90332407 + AT_rich Low_complexity Low_complexity 1 21 0 1924 140 14 0 chr13 11540763 11541042 -90332127 - AluJb SINE Alu -23 289 7 313 248 26 17 chr13 11541053 11541170 -90331999 + L1 LINE L1 4922 5039 -1107 29 28 0 0 chr13 11541203 11541239 -90331930 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 11541256 11541278 -90331891 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr13 11541586 11541639 -90331530 + AT_rich Low_complexity Low_complexity 1 53 0 2013 113 53 0 chr13 11541675 11541958 -90331211 + AluSx SINE Alu 2 299 -13 655 258 32 32 chr13 11542129 11542315 -90330854 + MER5A DNA MER1_type 4 189 0 587 252 15 0 chr13 11542650 11542781 -90330388 - FLAM_A SINE Alu 0 133 1 313 258 129 0 chr13 11542935 11543028 -90330141 + MIR SINE MIR 118 222 -40 2836 9 0 6 chr13 11543137 11543452 -90329717 - AluYb8 SINE Alu -5 313 1 279 262 123 8 chr13 11543508 11543630 -90329539 - L1ME4a LINE L1 -25 6096 5961 22 0 0 0 chr13 11543835 11543857 -90329312 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 11544361 11544399 -90328770 + AT_rich Low_complexity Low_complexity 1 38 0 2066 148 33 33 chr13 11544946 11545310 -90327859 - THE1B LTR MaLR 0 364 1 530 185 96 107 chr13 11546486 11546664 -90326505 - MER20 DNA MER1_type -42 177 2 325 280 47 9 chr13 11546916 11547023 -90326146 + MIR SINE MIR 131 241 -21 635 221 16 0 chr13 11547364 11547491 -90325678 + FLAM_C SINE Alu 2 130 -3 856 194 13 0 chr13 11548569 11548724 -90324445 - MER5A DNA MER1_type -3 186 30 1743 178 3 13 chr13 11549424 11549739 -90323430 - AluJb SINE Alu 0 312 1 29 70 0 0 chr13 11550236 11550293 -90322876 + AT_rich Low_complexity Low_complexity 1 57 0 456 67 0 0 chr13 11551494 11551554 -90321615 + (TG)n Simple_repeat Simple_repeat 2 61 0 384 202 11 34 chr13 11552433 11552522 -90320647 + MER105 DNA DNA 118 204 0 630 139 0 0 chr13 11553843 11553944 -90319225 + FLAM_C SINE Alu 33 133 -10 328 327 12 36 chr13 11554283 11554448 -90318721 - MER5B DNA MER1_type -17 161 1 1090 179 76 72 chr13 11554686 11554976 -90318193 + AluJo SINE Alu 1 291 -11 348 24 0 0 chr13 11554992 11555033 -90318136 + (TG)n Simple_repeat Simple_repeat 2 42 0 196 275 64 55 chr13 11555320 11555429 -90317740 + L3b LINE CR1 1176 1285 -298 * 287 317 195 22 chr13 11555401 11555705 -90317464 - L2 LINE L2 -189 3124 2764 23 54 0 0 chr13 11556310 11556347 -90316822 + AT_rich Low_complexity Low_complexity 1 37 0 634 233 7 14 chr13 11556375 11556521 -90316648 + FRAM SINE Alu 20 164 -12 181 211 58 19 chr13 11556619 11556671 -90316498 - MER5A DNA MER1_type 0 189 136 218 329 14 0 chr13 11556722 11556795 -90316374 + MER5A DNA MER1_type 95 168 -21 2312 101 0 0 chr13 11557149 11557446 -90315723 + AluSx SINE Alu 1 297 -15 48 18 0 0 chr13 11558055 11558110 -90315059 + AT_rich Low_complexity Low_complexity 1 55 0 648 184 0 0 chr13 11558110 11558213 -90314956 - U6 snRNA snRNA -3 104 2 180 0 0 0 chr13 11558784 11558804 -90314365 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1027 190 5 19 chr13 11558807 11559012 -90314157 - AluJo SINE Alu -24 288 87 798 183 26 37 chr13 11560779 11560970 -90312199 + MER5A DNA MER1_type 1 189 0 273 268 43 43 chr13 11561730 11561868 -90311301 + MLT1J1 LTR MaLR 288 425 -21 243 358 82 0 chr13 11563059 11563193 -90309976 - MIR3 SINE MIR -7 201 57 24 0 0 0 chr13 11564476 11564500 -90308669 + AT_rich Low_complexity Low_complexity 1 24 0 474 348 76 40 chr13 11564937 11565213 -90307956 + L3 LINE CR1 1263 1548 -29 1276 201 38 45 chr13 11565798 11566086 -90307083 + AluJo SINE Alu 1 286 -26 2298 53 40 10 chr13 11566548 11566849 -90306320 + AluY SINE Alu 1 310 -1 762 65 0 0 chr13 11567062 11567170 -90305999 + AluSp/q SINE Alu 206 313 0 27 0 0 0 chr13 11568397 11568424 -90304745 + AT_rich Low_complexity Low_complexity 1 27 0 32 26 0 0 chr13 11569555 11569594 -90303575 + AT_rich Low_complexity Low_complexity 1 39 0 21 82 0 0 chr13 11570118 11570167 -90303002 + AT_rich Low_complexity Low_complexity 1 49 0 26 64 0 0 chr13 11572589 11572636 -90300533 + AT_rich Low_complexity Low_complexity 1 47 0 2084 148 3 0 chr13 11573113 11573423 -90299746 - AluSx SINE Alu -1 311 1 2298 92 7 0 chr13 11573595 11573889 -90299280 - AluSx SINE Alu -16 296 1 21 0 0 0 chr13 11573889 11573910 -90299259 + AT_rich Low_complexity Low_complexity 1 21 0 325 261 52 15 chr13 11574205 11574339 -90298830 - L1MA10 LINE L1 0 6334 6196 400 215 30 44 chr13 11574383 11574518 -90298651 - L1MB8 LINE L1 -167 6011 5879 980 184 85 206 chr13 11576276 11576619 -90296550 - L1ME1 LINE L1 -281 5885 5559 591 139 111 0 chr13 11576619 11576727 -90296442 - FRAM SINE Alu -8 168 49 980 184 85 206 chr13 11576727 11576995 -90296174 - L1ME1 LINE L1 -607 5559 5260 421 189 74 0 chr13 11577107 11577202 -90295967 - L1MD3 LINE L1 -105 7890 7789 300 322 25 19 chr13 11577186 11577374 -90295795 - L1MDa LINE L1 -4620 1595 1450 * 805 232 143 36 chr13 11577381 11577661 -90295508 + MER2 DNA MER2_type 33 342 -3 3699 279 54 16 chr13 11577715 11579038 -90294131 - L1MDa LINE L1 -4979 1417 44 1364 197 45 31 chr13 11579529 11579819 -90293350 + AluJo SINE Alu 1 294 -18 1492 175 0 12 chr13 11580652 11580903 -90292266 + AluJo SINE Alu 7 254 -58 274 215 13 38 chr13 11580909 11580955 -90292214 + GA-rich Low_complexity Low_complexity 3 48 -31 210 37 0 0 chr13 11580955 11580982 -90292187 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 274 215 13 38 chr13 11580982 11581014 -90292155 + GA-rich Low_complexity Low_complexity 48 79 0 324 261 137 75 chr13 11581025 11581331 -90291838 + L1MC4a LINE L1 5607 5931 -1877 492 195 160 50 chr13 11581511 11581794 -90291375 - MER2 DNA MER2_type 0 345 1 1005 218 36 0 chr13 11582031 11582251 -90290918 + MER46A DNA MER2_type 9 236 0 186 240 120 53 chr13 11582781 11582856 -90290313 - L2 LINE L2 -38 3234 3155 195 288 15 30 chr13 11583346 11583412 -90289757 - L2 LINE L2 -660 2654 2590 27 29 0 0 chr13 11583633 11583667 -90289502 + AT_rich Low_complexity Low_complexity 1 34 0 219 311 143 45 chr13 11583691 11584108 -90289061 - L2 LINE L2 -939 2375 1896 2129 121 7 7 chr13 11584108 11584414 -90288755 + AluSx SINE Alu 1 306 -6 219 311 143 45 chr13 11584414 11584513 -90288656 - L2 LINE L2 -1418 1896 1808 183 80 0 0 chr13 11584843 11584868 -90288301 + (T)n Simple_repeat Simple_repeat 1 25 0 1812 145 34 17 chr13 11584877 11585174 -90287995 - AluJo SINE Alu -10 302 1 181 176 0 29 chr13 11586310 11586344 -90286825 - MIR SINE MIR -73 189 157 2248 98 3 25 chr13 11586621 11586937 -90286232 + AluSc SINE Alu 1 309 0 1630 188 0 17 chr13 11587123 11587410 -90285759 + AluJb SINE Alu 3 284 -28 1630 133 92 27 chr13 11587493 11587786 -90285383 + AluJb SINE Alu 1 312 0 574 27 27 0 chr13 11587821 11587896 -90285273 - MADE1 DNA Mariner -3 77 1 189 0 0 0 chr13 11588050 11588071 -90285098 + (TG)n Simple_repeat Simple_repeat 2 22 0 674 161 8 69 chr13 11589037 11589167 -90284002 + FLAM_C SINE Alu 9 130 -13 1181 110 0 6 chr13 11589179 11589343 -90283826 - AluY SINE Alu -27 284 122 24 0 0 0 chr13 11589343 11589367 -90283802 + AT_rich Low_complexity Low_complexity 1 24 0 1690 157 14 38 chr13 11589394 11589687 -90283482 + AluJo SINE Alu 10 295 -17 252 302 65 36 chr13 11589752 11589891 -90283278 - L2 LINE L2 -1386 1928 1786 423 307 147 13 chr13 11590585 11590816 -90282353 + MIR SINE MIR 1 262 0 2008 99 3 58 chr13 11592426 11592738 -90280431 - AluSx SINE Alu -17 295 1 1885 135 20 3 chr13 11592861 11593164 -90280005 + AluSx SINE Alu 1 308 -4 23 33 0 0 chr13 11594048 11594078 -90279091 + AT_rich Low_complexity Low_complexity 1 30 0 871 114 8 15 chr13 11594570 11594702 -90278467 + FLAM_C SINE Alu 1 131 -2 1966 142 7 13 chr13 11594893 11595203 -90277966 + AluSx SINE Alu 1 308 -4 259 261 0 46 chr13 11595309 11595374 -90277795 - AluS SINE Alu -9 293 232 361 278 139 11 chr13 11596995 11597182 -90275987 + MIR SINE MIR 52 262 0 591 200 36 0 chr13 11597373 11597483 -90275686 + FRAM SINE Alu 25 138 -38 581 177 133 0 chr13 11597597 11597710 -90275459 + FLAM_C SINE Alu 1 128 -5 1924 147 0 0 chr13 11597720 11597999 -90275170 + AluJb SINE Alu 11 289 -23 1319 167 125 11 chr13 11598395 11598659 -90274510 - AluJo SINE Alu -18 294 1 1210 201 20 8 chr13 11599041 11599285 -90273884 + AluJo SINE Alu 60 306 -6 2093 107 0 4 chr13 11599901 11600209 -90272960 + AluSg SINE Alu 1 307 0 459 296 145 13 chr13 11600375 11600534 -90272635 + MER5A DNA MER1_type 4 183 -6 2164 121 0 6 chr13 11600597 11600910 -90272259 - AluSx SINE Alu -1 311 1 1460 169 22 77 chr13 11600912 11601225 -90271944 - AluJo SINE Alu -16 296 1 915 104 72 10 chr13 11601256 11601541 -90271628 - THE1C LTR MaLR 0 375 1 248 327 44 76 chr13 11601891 11602039 -90271130 + L2 LINE L2 2461 2597 -717 1074 146 57 33 chr13 11602039 11602251 -90270918 + MER20 DNA MER1_type 2 218 -1 248 327 44 76 chr13 11602251 11602377 -90270792 + L2 LINE L2 2597 2726 -588 26 30 0 0 chr13 11602429 11602462 -90270707 + AT_rich Low_complexity Low_complexity 1 33 0 1338 174 13 0 chr13 11602477 11602701 -90270468 - AluJo SINE Alu -84 228 2 2168 69 12 75 chr13 11602714 11603033 -90270136 - AluSg SINE Alu -11 299 1 237 281 47 16 chr13 11603378 11603442 -90269727 + L2 LINE L2 3239 3304 -9 1192 90 90 0 chr13 11603651 11603829 -90269340 + MER30 DNA MER1_type 1 194 -36 1895 137 24 3 chr13 11604129 11604422 -90268747 + AluJb SINE Alu 4 302 -10 2069 107 35 3 chr13 11604540 11604829 -90268340 + AluSx SINE Alu 1 298 -14 182 225 0 28 chr13 11605064 11605135 -90268034 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 2012 137 3 0 chr13 11605730 11606036 -90267133 - AluSg SINE Alu -3 307 1 503 240 88 88 chr13 11606793 11606882 -90266287 - L1M4 LINE L1 -1440 4706 4618 286 29 0 0 chr13 11606882 11606916 -90266253 + (TTTTA)n Simple_repeat Simple_repeat 2 80 0 2198 103 0 0 chr13 11606916 11607197 -90265972 - AluSg SINE Alu -29 281 1 503 240 88 88 chr13 11607197 11607469 -90265700 - L1M4 LINE L1 -1526 4620 4344 256 164 0 0 chr13 11607557 11607612 -90265557 - L1MB8 LINE L1 -4 6174 6120 2788 178 21 8 chr13 11607565 11608098 -90265071 - L1MB7 LINE L1 -16 6168 5629 991 155 5 17 chr13 11608126 11608337 -90264832 - L1MB7 LINE L1 -693 5477 5263 7099 159 29 30 chr13 11608354 11610568 -90262601 - L1MA4 LINE L1 -1 6299 4065 1616 169 11 15 chr13 11610568 11610841 -90262328 - AluJb SINE Alu -11 301 30 7099 159 29 30 chr13 11610841 11611015 -90262154 - L1MA4 LINE L1 -2235 4065 3892 800 199 47 121 chr13 11611023 11611184 -90261985 - L1MB7 LINE L1 -891 5255 5128 203 88 29 0 chr13 11611184 11611218 -90261951 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 800 199 47 121 chr13 11611218 11611378 -90261791 - L1MB7 LINE L1 -1018 5128 4958 2327 102 0 3 chr13 11611494 11611797 -90261372 - AluSx SINE Alu -10 302 1 715 302 117 71 chr13 11612022 11612249 -90260920 - L1MEd LINE L1 -4745 1565 1350 1448 173 16 70 chr13 11612249 11612423 -90260746 - AluJb SINE Alu -17 295 144 2154 117 7 3 chr13 11612423 11612714 -90260455 - AluSq SINE Alu -21 292 1 1448 173 16 70 chr13 11612714 11612851 -90260318 - AluJb SINE Alu -168 144 1 715 302 117 71 chr13 11612851 11613919 -90259250 - L1MEd LINE L1 -4960 1350 148 2053 143 0 0 chr13 11613919 11614235 -90258934 - AluSx SINE Alu 0 316 1 715 302 117 71 chr13 11614235 11614380 -90258789 - L1MEd LINE L1 -6162 148 11 181 147 0 0 chr13 11615468 11615502 -90257667 + L3 LINE CR1 680 713 -864 971 184 11 6 chr13 11615647 11615821 -90257348 - FAM SINE Alu 0 175 1 626 281 45 25 chr13 11616216 11616458 -90256711 + MIR SINE MIR 5 251 -11 23 54 0 0 chr13 11616700 11616737 -90256432 + AT_rich Low_complexity Low_complexity 1 37 0 1369 113 0 0 chr13 11618151 11618328 -90254841 - AluSq SINE Alu -136 177 1 642 133 0 10 chr13 11618356 11618454 -90254715 + AluS SINE Alu 3 99 -213 198 0 0 0 chr13 11618482 11618504 -90254665 + (A)n Simple_repeat Simple_repeat 1 22 0 551 236 34 14 chr13 11618506 11618654 -90254515 - L2 LINE L2 -725 2589 2439 1705 176 14 0 chr13 11618656 11618940 -90254229 + AluJb SINE Alu 1 288 -24 803 224 244 60 chr13 11619105 11619601 -90253568 - MLT1G1 LTR MaLR 0 595 9 1852 218 124 34 chr13 11619659 11620334 -90252835 - L2 LINE L2 -986 2328 1593 195 234 160 11 chr13 11620377 11620471 -90252698 - L2 LINE L2 -1812 1502 1395 * 284 304 56 16 chr13 11620446 11620571 -90252598 + MIR SINE MIR 115 244 -18 403 282 36 0 chr13 11620843 11620953 -90252216 - L1ME3A LINE L1 -24 6146 6033 402 57 0 0 chr13 11622221 11622274 -90250895 + (CA)n Simple_repeat Simple_repeat 2 54 0 442 211 33 0 chr13 11625476 11625566 -90247603 + MLT1C LTR MaLR 373 465 -2 4060 163 42 42 chr13 11626228 11626963 -90246206 - L1MB8 LINE L1 0 6178 5441 1515 160 70 4 chr13 11626963 11627219 -90245950 - AluJb SINE Alu -39 273 1 4060 163 42 42 chr13 11627219 11627294 -90245875 - L1MB8 LINE L1 -736 5442 5368 392 258 199 7 chr13 11627296 11627384 -90245785 + MER58A DNA MER1_type 43 113 -2307 1426 133 55 0 chr13 11627384 11627602 -90245567 - MER30 DNA MER1_type 0 230 1 392 258 199 7 chr13 11627602 11627664 -90245505 + MER58A DNA MER1_type 113 222 -2 23 0 0 0 chr13 11629301 11629324 -90243845 + AT_rich Low_complexity Low_complexity 1 23 0 2400 54 0 14 chr13 11629489 11629784 -90243385 - AluY SINE Alu -20 291 1 267 287 23 0 chr13 11629848 11629935 -90243234 - MER5A DNA MER1_type -85 104 16 207 340 20 0 chr13 11630894 11630994 -90242175 - MIR3 SINE MIR -9 199 98 2505 93 0 0 chr13 11631590 11631902 -90241267 - AluSx SINE Alu 0 312 1 291 342 60 0 chr13 11632070 11632254 -90240915 + MIR SINE MIR 36 230 -32 543 261 100 66 chr13 11632491 11632718 -90240451 + L1MC4 LINE L1 7560 7809 -233 1643 153 4 0 chr13 11632718 11632967 -90240202 - AluJo SINE Alu -61 251 2 543 261 100 66 chr13 11632967 11633149 -90240020 + L1MC4 LINE L1 7809 7983 -59 547 97 11 11 chr13 11633164 11633257 -90239912 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 2201 129 0 0 chr13 11634680 11634990 -90238179 - AluSx SINE Alu -2 310 1 201 74 0 0 chr13 11635600 11635627 -90237542 + (A)n Simple_repeat Simple_repeat 1 27 0 1213 199 5 9 chr13 11635628 11635849 -90237320 + AluJb SINE Alu 3 222 -90 536 227 123 6 chr13 11636778 11636941 -90236228 + MIR SINE MIR 71 252 -10 2065 136 0 3 chr13 11636984 11637286 -90235883 + AluSx SINE Alu 1 301 -11 242 303 56 56 chr13 11637562 11637740 -90235429 + MIR SINE MIR 39 216 -46 2147 98 56 0 chr13 11638347 11638634 -90234535 - AluSx SINE Alu -9 303 1 990 111 13 20 chr13 11639674 11639827 -90233342 - FRAM SINE Alu -17 159 8 24 0 0 0 chr13 11642015 11642039 -90231130 + AT_rich Low_complexity Low_complexity 1 24 0 689 184 19 111 chr13 11642092 11642145 -90231024 + MER5A DNA MER1_type 1 57 -132 1802 70 9 0 chr13 11642145 11642373 -90230796 - MER30 DNA MER1_type 0 230 1 689 184 19 111 chr13 11642373 11642526 -90230643 + MER5A DNA MER1_type 57 188 -1 514 299 95 30 chr13 11644913 11645081 -90228088 - MIR SINE MIR -13 249 61 2411 87 3 0 chr13 11645081 11645379 -90227790 + AluSp SINE Alu 1 299 -14 514 299 95 30 chr13 11645379 11645441 -90227728 - MIR SINE MIR -201 61 4 264 272 60 0 chr13 11645680 11645767 -90227402 + MIR SINE MIR 46 140 -68 383 280 82 44 chr13 11647055 11647237 -90225932 + MIR3 SINE MIR 6 194 -14 2284 88 7 10 chr13 11647244 11647550 -90225619 + AluSq SINE Alu 1 305 -8 195 204 0 0 chr13 11647821 11647865 -90225304 + (ATG)n Simple_repeat Simple_repeat 2 45 0 588 298 34 0 chr13 11647895 11648073 -90225096 - MIR SINE MIR -74 188 5 2434 79 3 0 chr13 11648232 11648536 -90224633 - AluSx SINE Alu -7 305 1 180 0 0 0 chr13 11649468 11649488 -90223681 + (A)n Simple_repeat Simple_repeat 1 20 0 990 198 154 8 chr13 11649753 11650000 -90223169 - MER58B DNA MER1_type -1 340 58 32 43 0 0 chr13 11652096 11652142 -90221027 + AT_rich Low_complexity Low_complexity 1 46 0 230 211 122 67 chr13 11652192 11652282 -90220887 - HAL1b LINE L1 -61 1287 1193 265 60 0 40 chr13 11652301 11652351 -90220818 + (TA)n Simple_repeat Simple_repeat 1 48 0 2075 103 69 0 chr13 11652414 11652705 -90220464 - AluSx SINE Alu 0 312 2 409 230 122 14 chr13 11652769 11652917 -90220252 - L1MC/D LINE L1 -2061 5747 5584 252 240 53 0 chr13 11652996 11653071 -90220098 + Charlie7 DNA MER1_type 1676 1754 -858 2167 104 3 3 chr13 11653152 11653441 -90219728 - AluSg SINE Alu -21 289 1 1850 143 17 30 chr13 11653656 11653956 -90219213 + AluJo SINE Alu 1 296 -16 408 212 71 0 chr13 11654381 11654495 -90218674 + MIR SINE MIR 72 192 -62 266 343 30 47 chr13 11656153 11656389 -90216780 - L3b LINE CR1 -172 1411 1180 2309 112 0 0 chr13 11658447 11658752 -90214417 - AluSx SINE Alu -7 305 1 227 286 110 22 chr13 11660567 11660658 -90212511 + L2 LINE L2 3158 3256 -16 284 368 66 7 chr13 11660716 11660852 -90212317 + L2 LINE L2 3121 3264 -8 2126 115 0 0 chr13 11661657 11661935 -90211234 + AluSx SINE Alu 21 298 -14 195 235 0 39 chr13 11662993 11663044 -90210125 - L2 LINE L2 0 3272 3224 776 266 82 20 chr13 11663052 11663296 -90209873 + MIR SINE MIR 4 262 0 2294 119 0 0 chr13 11663576 11663887 -90209282 - AluSq SINE Alu -2 311 1 529 314 57 13 chr13 11664307 11664536 -90208633 + MIR SINE MIR 3 241 -21 243 88 0 0 chr13 11664639 11664673 -90208496 + (TC)n Simple_repeat Simple_repeat 1 34 0 2310 112 0 13 chr13 11664673 11664987 -90208182 - AluSx SINE Alu -2 310 1 2148 108 3 29 chr13 11664997 11665313 -90207856 - AluSq SINE Alu -5 308 1 2534 74 0 0 chr13 11665335 11665645 -90207524 - AluY SINE Alu 0 311 2 458 257 44 112 chr13 11665645 11666113 -90207056 + L2 LINE L2 2588 3020 -252 188 232 0 101 chr13 11666201 11666270 -90206899 + L2 LINE L2 3197 3258 -14 186 43 0 0 chr13 11666274 11666297 -90206872 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 1869 162 13 3 chr13 11666498 11666807 -90206362 - AluJb SINE Alu 0 312 1 1702 159 36 0 chr13 11668142 11668418 -90204751 + AluJo SINE Alu 1 286 -26 201 132 0 0 chr13 11668418 11668456 -90204713 + (GA)n Simple_repeat Simple_repeat 1 38 0 301 295 152 0 chr13 11668837 11668942 -90204227 - L2 LINE L2 -225 3047 2927 1967 106 25 18 chr13 11668945 11669229 -90203940 + AluSx SINE Alu 1 286 -26 909 234 81 0 chr13 11669434 11669656 -90203513 - MIR SINE MIR -15 247 8 440 336 169 14 chr13 11669780 11670200 -90202969 + L2 LINE L2 2476 2960 -354 2350 69 0 26 chr13 11670332 11670636 -90202533 + AluY SINE Alu 1 296 -15 203 283 162 0 chr13 11670671 11670770 -90202399 - L2 LINE L2 -9 3263 3149 397 299 26 0 chr13 11670806 11670923 -90202246 + L2 LINE L2 3194 3313 0 498 75 0 0 chr13 11671130 11671197 -90201972 + (CA)n Simple_repeat Simple_repeat 2 68 0 246 179 45 75 chr13 11672462 11672529 -90200640 + MIR SINE MIR 111 175 -87 558 165 0 0 chr13 11672567 11672670 -90200499 + CT-rich Low_complexity Low_complexity 4 106 0 189 364 148 12 chr13 11672882 11673044 -90200125 + L2 LINE L2 3029 3212 -60 567 254 171 31 chr13 11673586 11673814 -90199355 - MIR SINE MIR 0 262 3 471 274 44 27 chr13 11673848 11674062 -90199107 + MIR SINE MIR 23 240 -22 2397 96 0 0 chr13 11674995 11675297 -90197872 + AluSx SINE Alu 1 302 -10 480 301 5 61 chr13 11676041 11676254 -90196915 - L3 LINE CR1 -195 1382 1182 491 334 51 13 chr13 11676845 11677074 -90196095 + MIR SINE MIR 15 252 -10 206 322 45 118 chr13 11677076 11677390 -90195779 - L2 LINE L2 -51 3221 2931 204 115 39 58 chr13 11677838 11677890 -90195279 + MIR SINE MIR 67 117 -91 264 122 0 0 chr13 11679553 11679594 -90193575 + (T)n Simple_repeat Simple_repeat 1 41 0 499 281 102 0 chr13 11679746 11679913 -90193256 - MIR SINE MIR 0 262 79 430 260 281 5 chr13 11679984 11680180 -90192989 + MIR SINE MIR 2 251 -11 5759 147 19 16 chr13 11680841 11681534 -90191635 + L1MA6 LINE L1 4737 5427 -873 2240 111 3 0 chr13 11681534 11681832 -90191337 + AluSx SINE Alu 1 299 -13 5759 147 19 16 chr13 11681832 11682694 -90190475 + L1MA6 LINE L1 5427 6295 -5 2238 96 0 16 chr13 11682703 11683015 -90190154 + AluSg SINE Alu 1 307 -3 422 260 50 0 chr13 11683102 11683202 -90189967 - L2 LINE L2 -1 3312 3208 236 151 314 0 chr13 11683413 11683499 -90189670 - L1MC/D LINE L1 -2340 5468 5356 309 359 91 36 chr13 11683525 11683909 -90189260 - L2 LINE L2 -485 2829 2425 302 257 48 48 chr13 11683927 11684032 -90189137 + MIR SINE MIR 86 190 -72 926 113 0 57 chr13 11684242 11684383 -90188786 + FLAM_C SINE Alu 1 133 0 1998 119 28 0 chr13 11685327 11685612 -90187557 - AluSx SINE Alu -19 293 1 865 267 52 82 chr13 11685616 11685917 -90187252 - L1MC/D LINE L1 -762 5384 5076 1049 179 0 0 chr13 11685917 11686079 -90187090 - FRAM SINE Alu -2 164 3 865 267 52 82 chr13 11686079 11686757 -90186412 - L1MC/D LINE L1 -1070 5076 4542 353 95 222 0 chr13 11686757 11686820 -90186349 + MER116 DNA Mariner 1 77 -3 865 267 52 82 chr13 11686820 11686983 -90186186 - L1MC/D LINE L1 -1604 4542 4376 2302 92 3 0 chr13 11687064 11687356 -90185813 - AluSx SINE Alu -19 293 1 745 257 40 71 chr13 11687606 11687902 -90185267 - MER102a DNA MER1_type -6 324 38 246 360 134 57 chr13 11687978 11688177 -90184992 + L2 LINE L2 2804 2986 -286 2293 95 0 3 chr13 11688177 11688473 -90184696 - AluSq SINE Alu -16 297 3 246 360 134 57 chr13 11688473 11688692 -90184477 + L2 LINE L2 2986 3254 -18 222 339 0 0 chr13 11689565 11689627 -90183542 + L2 LINE L2 2994 3055 -217 2173 99 7 0 chr13 11689837 11690156 -90183013 - AluSq SINE Alu 0 321 1 708 123 0 0 chr13 11690245 11690359 -90182810 + (ATG)n Simple_repeat Simple_repeat 1 114 0 2383 93 0 0 chr13 11690408 11690709 -90182460 - AluSq SINE Alu -12 301 1 2462 72 0 7 chr13 11691089 11691394 -90181775 - AluY SINE Alu -8 303 1 423 226 12 0 chr13 11694185 11694269 -90178900 + L2 LINE L2 3188 3272 0 2341 95 0 0 chr13 11694634 11694930 -90178239 - AluSc SINE Alu -13 296 1 510 332 25 51 chr13 11695098 11695333 -90177836 + MIR SINE MIR 21 249 -13 504 219 34 8 chr13 11695340 11695459 -90177710 + MIR SINE MIR 131 252 -10 2101 124 30 0 chr13 11695644 11695942 -90177227 + AluSx SINE Alu 1 307 -5 359 260 68 62 chr13 11697445 11697591 -90175578 - MIR SINE MIR -66 196 50 2155 128 0 6 chr13 11697858 11698170 -90174999 + AluSx SINE Alu 1 310 -2 377 185 102 28 chr13 11698295 11698403 -90174766 + MIR3 SINE MIR 83 198 -10 242 210 67 134 chr13 11698491 11698610 -90174559 - L2 LINE L2 0 3313 3203 298 335 120 38 chr13 11699075 11699341 -90173828 - L2 LINE L2 -553 2761 2474 29 60 0 0 chr13 11699627 11699677 -90173492 + AT_rich Low_complexity Low_complexity 1 50 0 2369 74 3 10 chr13 11699965 11700263 -90172906 + AluY SINE Alu 1 296 -15 1085 131 11 23 chr13 11700263 11700439 -90172730 + AluSc SINE Alu 132 305 -4 867 164 7 33 chr13 11700439 11700591 -90172578 - MER2 DNA MER2_type -192 153 6 2116 120 0 46 chr13 11700735 11701060 -90172109 + AluSx SINE Alu 1 310 -2 319 245 10 10 chr13 11702292 11702390 -90170779 + (CAATA)n Simple_repeat Simple_repeat 3 100 0 1971 144 0 3 chr13 11706988 11707280 -90165889 - AluSx SINE Alu -21 291 1 620 141 0 10 chr13 11707848 11707947 -90165222 + MER4A LTR ERV1 1 98 -566 2151 97 169 29 chr13 11707947 11708296 -90164873 + MER4A LTR ERV1 261 658 -6 1831 171 0 7 chr13 11710161 11710471 -90162698 - AluJb SINE Alu -4 308 1 1645 271 73 38 chr13 11711239 11711879 -90161290 + MER115 DNA AcHobo 1 693 0 889 172 155 61 chr13 11711956 11712252 -90160917 + MER33 DNA MER1_type 1 324 0 249 276 0 40 chr13 11712601 11712677 -90160492 + MIR3 SINE MIR 125 197 -11 246 277 134 27 chr13 11713223 11713335 -90159834 - L2 LINE L2 -22 3291 3168 861 186 0 0 chr13 11714142 11714271 -90158898 - FLAM_A SINE Alu -4 129 1 396 0 0 0 chr13 11714335 11714379 -90158790 + (TG)n Simple_repeat Simple_repeat 2 45 0 248 261 125 34 chr13 11715305 11715393 -90157776 - L2 LINE L2 -8 3264 3169 676 311 28 16 chr13 11716442 11716690 -90156479 - MIR SINE MIR -10 252 2 29 84 0 0 chr13 11717034 11717105 -90156064 + AT_rich Low_complexity Low_complexity 1 71 0 1774 128 0 0 chr13 11717529 11717772 -90155397 + AluSq SINE Alu 1 243 -70 246 32 0 0 chr13 11717772 11717803 -90155366 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 201 116 23 23 chr13 11719127 11719170 -90153999 + (TA)n Simple_repeat Simple_repeat 1 43 0 279 114 0 0 chr13 11719332 11719376 -90153793 + (TTATG)n Simple_repeat Simple_repeat 2 45 0 1946 110 33 47 chr13 11719379 11719679 -90153490 - AluSx SINE Alu -16 296 1 218 360 46 39 chr13 11719684 11719837 -90153332 - MIR SINE MIR -62 200 47 2219 122 0 6 chr13 11720347 11720659 -90152510 + AluSg SINE Alu 1 310 0 2475 103 0 0 chr13 11721323 11721635 -90151534 + AluSx SINE Alu 1 312 0 289 276 92 0 chr13 11721976 11722063 -90151106 - MER5B DNA MER1_type 0 178 84 291 28 0 0 chr13 11723214 11723250 -90149919 + (TTA)n Simple_repeat Simple_repeat 1 36 0 809 148 41 0 chr13 11723250 11723372 -90149797 - FRAM SINE Alu -30 146 20 458 239 6 154 chr13 11723851 11724209 -90148960 - L1MC5 LINE L1 -56 7905 7647 1777 164 48 0 chr13 11725928 11726221 -90146948 - AluJb SINE Alu -5 307 1 536 282 31 37 chr13 11727264 11727481 -90145688 - MIR SINE MIR -19 243 37 2273 87 23 3 chr13 11727856 11728155 -90145014 + AluSp SINE Alu 1 305 -8 2041 110 4 0 chr13 11728863 11729307 -90143862 - AluSx SINE Alu 0 445 1 878 38 0 0 chr13 11729314 11729419 -90143750 - AluSg/x SINE Alu -3 307 203 201 360 67 11 chr13 11730403 11730492 -90142677 + MIR SINE MIR 1 94 -168 260 258 30 0 chr13 11731124 11731190 -90141979 + MIR SINE MIR 193 260 -2 233 372 43 11 chr13 11731222 11731316 -90141853 + L2 LINE L2 3165 3261 -11 2257 85 0 4 chr13 11731786 11732090 -90141079 + AluSp SINE Alu 3 305 0 734 236 82 52 chr13 11732642 11732875 -90140294 - MIR SINE MIR -21 241 2 370 288 92 26 chr13 11733102 11733255 -90139914 + MIR SINE MIR 85 247 -15 299 238 99 10 chr13 11734113 11734214 -90138955 + MIR SINE MIR 32 141 -67 541 170 217 9 chr13 11734258 11734364 -90138805 - FLAM_A SINE Alu -14 128 1 1568 137 47 36 chr13 11735161 11735459 -90137710 - AluJb SINE Alu 0 301 1 250 278 78 26 chr13 11735500 11735615 -90137554 + MIR SINE MIR 109 229 -33 2331 80 0 7 chr13 11736184 11736483 -90136686 + AluSc SINE Alu 1 297 -12 308 289 67 0 chr13 11738625 11738729 -90134440 - MIR SINE MIR -68 140 30 249 271 47 47 chr13 11740389 11740496 -90132673 - MIR SINE MIR -44 218 112 2006 136 40 0 chr13 11740702 11741003 -90132166 - AluSq SINE Alu 0 313 1 21 0 0 0 chr13 11741012 11741033 -90132136 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 11742484 11742512 -90130657 + AT_rich Low_complexity Low_complexity 1 28 0 311 328 147 58 chr13 11743172 11743498 -90129671 - L2 LINE L2 0 3272 2918 181 323 16 16 chr13 11743615 11743677 -90129492 + MIR SINE MIR 34 95 -113 382 231 154 19 chr13 11745458 11745614 -90127555 + MIR3 SINE MIR 27 203 -5 233 275 117 17 chr13 11748404 11748524 -90124645 - MIR SINE MIR -13 249 118 1046 161 118 0 chr13 11749432 11749618 -90123551 - MER3 DNA MER1_type -1 208 1 2337 94 0 0 chr13 11751496 11751795 -90121374 + AluSx SINE Alu 1 299 -13 598 290 50 18 chr13 11753665 11753886 -90119283 - MIR SINE MIR -21 241 14 261 157 39 0 chr13 11754294 11754345 -90118824 - L2 LINE L2 -11 3261 3209 1450 218 65 25 chr13 11756395 11756798 -90116371 + MLT1C LTR MaLR 3 421 -46 330 227 27 0 chr13 11757184 11757259 -90115910 - MIR3 SINE MIR -54 154 78 646 214 209 0 chr13 11757538 11757744 -90115425 + MIR SINE MIR 14 262 0 3831 153 91 15 chr13 11757774 11758433 -90114736 + MER50 LTR ERV1 1 709 -25 917 111 0 52 chr13 11758555 11758690 -90114479 + FLAM_C SINE Alu 2 129 -4 25 31 0 0 chr13 11758778 11758810 -90114359 + AT_rich Low_complexity Low_complexity 1 32 0 306 50 0 0 chr13 11759597 11759637 -90113532 + (CA)n Simple_repeat Simple_repeat 2 41 0 8338 208 38 41 chr13 11760774 11761055 -90112114 + L1M4 LINE L1 2311 2591 -3555 2014 138 7 0 chr13 11761055 11761345 -90111824 + AluSx SINE Alu 1 292 -20 8338 208 38 41 chr13 11761345 11762090 -90111079 + L1M4 LINE L1 2591 3337 -2809 2020 114 7 0 chr13 11762090 11762363 -90110806 + AluSx SINE Alu 1 275 -37 8338 208 38 41 chr13 11762363 11762557 -90110612 + L1M4 LINE L1 3337 3530 -2616 234 0 0 0 chr13 11762557 11762583 -90110586 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8338 208 38 41 chr13 11762583 11763759 -90109410 + L1M4 LINE L1 3530 4702 -1444 1047 16 0 0 chr13 11763869 11763990 -90109179 + (TTTCC)n Simple_repeat Simple_repeat 2 122 0 2052 122 4 0 chr13 11763991 11764270 -90108899 - AluSq SINE Alu -32 281 2 602 301 64 30 chr13 11764327 11764593 -90108576 - L3 LINE CR1 -647 930 656 492 241 196 77 chr13 11764633 11764919 -90108250 - L2 LINE L2 -1 3271 2952 246 237 110 68 chr13 11765069 11765187 -90107982 - MIR SINE MIR -21 241 119 270 254 0 0 chr13 11765330 11765385 -90107784 + MIR SINE MIR 61 115 -147 6055 165 33 44 chr13 11765422 11767362 -90105807 + L1MC1 LINE L1 4066 5963 -370 2389 96 0 0 chr13 11767362 11767665 -90105504 + AluSg SINE Alu 1 303 -7 6055 165 33 44 chr13 11767665 11768022 -90105147 + L1MC1 LINE L1 5963 6323 -10 201 121 0 0 chr13 11768024 11768057 -90105112 + (CA)n Simple_repeat Simple_repeat 2 34 0 389 271 90 8 chr13 11768058 11768180 -90104989 + MIR SINE MIR 128 259 -3 282 234 62 0 chr13 11768187 11768251 -90104918 - MIR SINE MIR -155 107 40 2053 120 40 7 chr13 11768770 11769071 -90104098 - AluSx SINE Alu -1 311 1 303 28 0 0 chr13 11771644 11771680 -90101489 + (CA)n Simple_repeat Simple_repeat 2 37 0 512 250 18 43 chr13 11771712 11771815 -90101354 + MER112 DNA MER1_type 69 168 -92 1002 202 18 0 chr13 11771815 11771983 -90101186 - FAM SINE Alu -4 171 1 512 250 18 43 chr13 11771983 11772043 -90101126 + MER112 DNA MER1_type 168 228 -32 401 95 27 27 chr13 11772416 11772490 -90100679 + Alu SINE Alu 238 311 0 203 271 119 0 chr13 11773859 11773918 -90099251 + MIR SINE MIR 125 190 -72 180 242 0 129 chr13 11774149 11774211 -90098958 + L2 LINE L2 3239 3292 -21 187 281 0 0 chr13 11774813 11774870 -90098299 + L2 LINE L2 3257 3313 0 391 323 19 7 chr13 11775197 11775352 -90097817 - MER117 DNA MER1_type 0 197 41 384 246 25 49 chr13 11775354 11775476 -90097693 - L2 LINE L2 0 3313 3195 2057 119 26 3 chr13 11776407 11776710 -90096459 + AluSx SINE Alu 1 310 -2 391 241 11 0 chr13 11777472 11777559 -90095610 - L2 LINE L2 -31 3241 3154 237 304 43 22 chr13 11778939 11779031 -90094138 + MIR SINE MIR 48 141 -67 444 252 34 42 chr13 11779251 11779370 -90093799 + MIR3 SINE MIR 75 192 -16 2005 174 137 0 chr13 11779376 11779749 -90093420 + MSTB LTR MaLR 1 424 -2 299 273 23 0 chr13 11779841 11779929 -90093240 + CT-rich Low_complexity Low_complexity 1 90 0 302 295 48 23 chr13 11780241 11780384 -90092785 + MIR SINE MIR 18 133 -75 1951 127 3 10 chr13 11780591 11780883 -90092286 - AluSx SINE Alu -9 303 14 21 36 0 0 chr13 11780888 11780916 -90092253 + AT_rich Low_complexity Low_complexity 1 28 0 2310 86 0 0 chr13 11781523 11781828 -90091341 - AluSq SINE Alu 0 310 6 279 287 103 29 chr13 11783550 11783686 -90089483 + MIR3 SINE MIR 61 206 -2 2662 170 32 54 chr13 11783744 11784197 -90088972 + L1MB8 LINE L1 5293 5754 -424 2348 103 0 0 chr13 11784197 11784507 -90088662 + AluSx SINE Alu 1 310 -2 2662 170 32 54 chr13 11784507 11784519 -90088650 + L1MB8 LINE L1 5754 5765 -413 1256 83 0 6 chr13 11784519 11784699 -90088470 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2662 170 32 54 chr13 11784699 11784826 -90088343 + L1MB8 LINE L1 5765 5873 -305 735 205 0 58 chr13 11784830 11784986 -90088183 + MLT1B LTR MaLR 192 338 -52 1942 133 18 4 chr13 11785008 11785314 -90087855 + AluSx SINE Alu 1 310 0 363 23 0 0 chr13 11785315 11785359 -90087810 + (CA)n Simple_repeat Simple_repeat 1 44 0 1839 98 16 112 chr13 11785359 11785725 -90087444 + L1MB7 LINE L1 5854 6184 0 216 135 0 0 chr13 11786939 11786976 -90086193 + (CA)n Simple_repeat Simple_repeat 1 37 0 249 310 60 9 chr13 11791125 11791241 -90081928 - L2 LINE L2 -59 3254 3133 188 333 58 33 chr13 11791295 11791415 -90081754 - L2 LINE L2 -179 3093 2971 393 22 0 0 chr13 11792272 11792318 -90080851 + (CA)n Simple_repeat Simple_repeat 2 47 0 306 172 0 17 chr13 11792396 11792454 -90080715 - L2 LINE L2 -1 3312 3256 1866 106 98 0 chr13 11793002 11793266 -90079903 + AluSp SINE Alu 2 291 -22 198 0 0 0 chr13 11793297 11793319 -90079850 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 234 91 0 0 chr13 11793323 11793356 -90079813 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 180 375 0 0 chr13 11794778 11794834 -90078335 + MIR SINE MIR 47 102 -160 200 351 37 12 chr13 11795598 11795703 -90077466 + MIR SINE MIR 30 133 -75 1427 36 24 0 chr13 11795753 11795919 -90077250 + L1PA4 LINE L1 5985 6154 -1 25 31 0 0 chr13 11795944 11795976 -90077193 + AT_rich Low_complexity Low_complexity 1 32 0 230 0 33 0 chr13 11796273 11796303 -90076866 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 610 253 58 25 chr13 11796469 11796882 -90076287 + MLT1H LTR MaLR 79 549 0 1012 159 23 0 chr13 11797732 11797908 -90075261 + MER5A DNA MER1_type 1 180 -9 831 225 18 0 chr13 11797908 11798077 -90075092 - MER5B DNA MER1_type -4 174 3 2058 141 0 7 chr13 11798945 11799242 -90073927 + AluSx SINE Alu 1 295 -17 265 179 0 0 chr13 11799365 11799421 -90073748 - MER5A DNA MER1_type -131 58 3 189 374 112 52 chr13 11800162 11800547 -90072622 - L2 LINE L2 0 3272 2865 390 295 79 7 chr13 11800901 11801040 -90072129 + MIR3 SINE MIR 41 189 -19 245 223 64 64 chr13 11802595 11802689 -90070480 - MIR3 SINE MIR 0 208 115 21 57 0 0 chr13 11804417 11804452 -90068717 + AT_rich Low_complexity Low_complexity 1 35 0 383 292 141 73 chr13 11805506 11806054 -90067115 + L1M2 LINE L1 444 1028 -5821 216 330 71 0 chr13 11809145 11809257 -90063912 - L3 LINE CR1 -298 1279 1160 550 325 77 21 chr13 11809694 11810032 -90063137 - L3 LINE CR1 -572 1005 649 276 100 0 0 chr13 11810041 11810081 -90063088 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 252 159 63 63 chr13 11810586 11810649 -90062520 - L1ME4a LINE L1 -91 6030 5968 195 245 113 53 chr13 11811543 11811694 -90061475 - L2 LINE L2 -815 2499 2340 778 169 0 0 chr13 11811769 11811908 -90061261 + FLAM_A SINE Alu 1 139 0 1634 209 62 84 chr13 11812112 11812403 -90060766 + L1M4 LINE L1 4751 5026 -1120 1622 173 14 28 chr13 11812403 11812692 -90060477 - AluJb SINE Alu -27 285 1 1634 209 62 84 chr13 11812692 11812936 -90060233 + L1M4 LINE L1 5026 5274 -872 259 209 45 9 chr13 11812936 11813046 -90060123 + (TA)n Simple_repeat Simple_repeat 2 115 0 4680 173 42 5 chr13 11813059 11813982 -90059187 + L1MB7 LINE L1 5221 6182 -2 1698 168 46 11 chr13 11814205 11814490 -90058679 + AluJo SINE Alu 1 295 -17 221 0 35 0 chr13 11815149 11815178 -90057991 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 346 175 25 0 chr13 11815844 11815924 -90057245 + GA-rich Low_complexity Low_complexity 3 84 0 422 298 77 17 chr13 11816035 11816216 -90056953 - MIR3 SINE MIR 0 208 17 1934 128 4 4 chr13 11816483 11816790 -90056379 + AluSx SINE Alu 1 307 0 654 292 86 22 chr13 11817173 11817488 -90055681 - MER102b DNA MER1_type -2 339 5 207 303 185 43 chr13 11817580 11817742 -90055427 + MIR SINE MIR 20 204 -58 398 285 118 57 chr13 11817879 11818125 -90055044 - L3 LINE CR1 -137 1440 1180 273 263 158 0 chr13 11818147 11818242 -90054927 - MIR SINE MIR -65 197 88 1603 111 36 4 chr13 11818455 11818680 -90054489 - AluSx SINE Alu -80 232 1 321 140 0 0 chr13 11819570 11819627 -90053542 - AluJo SINE Alu -3 299 243 994 182 39 54 chr13 11819627 11819830 -90053339 - AluJo SINE Alu -106 206 7 700 167 0 0 chr13 11820006 11820114 -90053055 - FLAM_C SINE Alu -18 125 18 192 391 0 0 chr13 11820348 11820417 -90052752 + L2 LINE L2 3183 3251 -62 1000 173 0 53 chr13 11820569 11820777 -90052392 + AluJo SINE Alu 13 209 -103 320 284 195 12 chr13 11821231 11821372 -90051797 - L1ME4a LINE L1 -33 6088 5974 2218 112 0 10 chr13 11821372 11821676 -90051493 + AluSc SINE Alu 1 301 -8 320 284 195 12 chr13 11821676 11821791 -90051378 - L1ME4a LINE L1 -147 5974 5785 258 284 79 48 chr13 11821968 11822197 -90050972 - L1M2 LINE L1 -758 5533 5298 2220 114 10 0 chr13 11822299 11822607 -90050562 - AluSq SINE Alu -2 311 1 1225 274 102 26 chr13 11822991 11823491 -90049678 + L2 LINE L2 2150 2695 -619 2362 92 0 0 chr13 11823491 11823784 -90049385 - AluY SINE Alu -18 293 1 1225 274 102 26 chr13 11823784 11823824 -90049345 + L2 LINE L2 2695 2731 -583 657 281 45 72 chr13 11823895 11824269 -90048900 + L2 LINE L2 2950 3313 0 2478 55 0 39 chr13 11824363 11824674 -90048495 - AluY SINE Alu -12 299 1 1546 189 10 32 chr13 11825096 11825408 -90047761 + AluJo SINE Alu 1 305 -7 1578 168 55 34 chr13 11825649 11825941 -90047228 - AluJb SINE Alu -10 302 5 347 296 88 6 chr13 11826085 11826244 -90046925 + L1MC4a LINE L1 5711 5882 -1926 294 301 44 0 chr13 11826386 11826499 -90046670 + HAL1 LINE L1 2377 2494 -13 27 0 0 0 chr13 11826545 11826572 -90046597 + AT_rich Low_complexity Low_complexity 1 27 0 874 204 0 0 chr13 11826572 11826724 -90046445 + FRAM SINE Alu 2 153 -23 1753 176 20 0 chr13 11826768 11827064 -90046105 + AluJo SINE Alu 1 302 -10 1923 209 52 8 chr13 11827236 11827624 -90045545 + MER47B DNA MER2_type 2 406 -12 232 146 24 0 chr13 11827666 11827707 -90045462 - MER47B DNA MER2_type -364 54 13 1252 178 38 8 chr13 11827926 11828006 -90045163 + MER7A DNA MER2_type 16 92 -2946 2115 114 6 29 chr13 11828006 11828322 -90044847 - AluSc SINE Alu 0 309 1 1252 178 38 8 chr13 11828322 11828477 -90044692 + MER7A DNA MER2_type 92 256 -90 418 198 99 0 chr13 11828498 11828599 -90044570 + MLT1B LTR MaLR 241 351 -39 279 54 0 0 chr13 11828691 11828728 -90044441 + (GA)n Simple_repeat Simple_repeat 1 37 0 258 169 0 31 chr13 11828734 11828799 -90044370 + (TA)n Simple_repeat Simple_repeat 2 64 0 2027 116 30 26 chr13 11828957 11829260 -90043909 + AluSx SINE Alu 1 304 -8 411 253 0 0 chr13 11829260 11829347 -90043822 + AluJo/F(R)AM SINE Alu 134 220 -92 1931 147 0 32 chr13 11829391 11829703 -90043466 + AluSx SINE Alu 1 302 -10 647 230 98 10 chr13 11829751 11829955 -90043214 + L1MD2 LINE L1 6135 6356 -3 2099 114 17 0 chr13 11830000 11830299 -90042870 + AluSg SINE Alu 1 304 -6 272 154 0 0 chr13 11830366 11830405 -90042764 + 5S rRNA rRNA 1 39 -82 2563 55 7 3 chr13 11830503 11830813 -90042356 + AluY SINE Alu 1 311 0 256 264 35 11 chr13 11830852 11830939 -90042230 + L2 LINE L2 3186 3274 -39 326 210 90 20 chr13 11831386 11831486 -90041683 - MIR SINE MIR -115 147 41 600 151 0 86 chr13 11831780 11831919 -90041250 + FLAM_A SINE Alu 16 142 0 620 175 0 25 chr13 11832359 11832479 -90040690 + AluJb SINE Alu 51 167 -145 21 0 0 0 chr13 11832485 11832506 -90040663 + AT_rich Low_complexity Low_complexity 1 21 0 728 200 8 0 chr13 11832550 11832680 -90040489 + FLAM_C SINE Alu 2 132 -11 2196 98 26 0 chr13 11833256 11833561 -90039608 + AluSp SINE Alu 1 313 0 256 225 6 144 chr13 11833652 11833712 -90039457 - MIR3 SINE MIR -34 174 107 2636 35 3 6 chr13 11833712 11834024 -90039145 + AluY SINE Alu 1 311 0 256 225 6 144 chr13 11834024 11834123 -90039046 - MIR3 SINE MIR -101 107 37 1852 158 4 0 chr13 11834459 11834738 -90038431 - AluJb SINE Alu -32 280 1 717 190 22 3 chr13 11834741 11834899 -90038270 - L1ME1 LINE L1 -2 6332 6017 2011 125 11 0 chr13 11834904 11835183 -90037986 + AluSg SINE Alu 7 288 -22 838 145 8 0 chr13 11835193 11835317 -90037852 + AluSq/x SINE Alu 1 125 -187 981 0 9 0 chr13 11835436 11835545 -90037624 - AluY SINE Alu -201 110 1 855 168 0 0 chr13 11835677 11835808 -90037361 + AluJo/FLAM SINE Alu 1 131 -171 2227 109 0 7 chr13 11835810 11836113 -90037056 + AluSx SINE Alu 1 301 -11 258 314 39 101 chr13 11836283 11836490 -90036679 + L2 LINE L2 328 521 -2793 1968 125 55 0 chr13 11836501 11836629 -90036540 + AluSx SINE Alu 1 120 -192 2318 103 3 0 chr13 11836629 11836929 -90036240 + AluSq SINE Alu 1 301 -12 1968 125 55 0 chr13 11836929 11837089 -90036080 + AluSx SINE Alu 120 305 -7 268 250 109 83 chr13 11837124 11837325 -90035844 - L1ME4a LINE L1 -59 6062 5868 2238 68 0 48 chr13 11837325 11837657 -90035512 + AluY SINE Alu 1 318 0 2325 108 0 0 chr13 11837658 11837955 -90035214 + AluSx SINE Alu 1 297 -15 268 250 109 83 chr13 11837955 11838062 -90035107 - L1ME4a LINE L1 -252 5869 5743 2096 115 30 0 chr13 11838077 11838373 -90034796 - AluSp SINE Alu -7 306 2 2294 103 0 0 chr13 11838374 11838664 -90034505 - AluSg SINE Alu -20 290 1 747 182 8 0 chr13 11838724 11838856 -90034313 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr13 11839395 11839417 -90033752 + AT_rich Low_complexity Low_complexity 1 22 0 1840 150 6 16 chr13 11839642 11839955 -90033214 - AluJo SINE Alu -2 310 1 418 317 35 7 chr13 11841038 11841183 -90031986 + MLT1F1 LTR MaLR 14 162 -431 1072 154 65 25 chr13 11841204 11841405 -90031764 + AluJo SINE Alu 85 293 -19 448 100 67 44 chr13 11841405 11841495 -90031674 + LTR9 LTR ERV1 435 526 -86 254 28 0 28 chr13 11841501 11841537 -90031632 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1370 143 0 14 chr13 11841544 11841760 -90031409 + AluJb SINE Alu 82 294 -18 1234 231 75 32 chr13 11841789 11842071 -90031098 + MLT1F1 LTR MaLR 202 503 -64 2308 102 0 0 chr13 11842071 11842364 -90030805 - AluSx SINE Alu -19 293 1 1234 231 75 32 chr13 11842364 11842427 -90030742 + MLT1F1 LTR MaLR 503 562 -5 180 176 0 0 chr13 11842443 11842477 -90030692 + CT-rich Low_complexity Low_complexity 1 34 0 1828 94 106 8 chr13 11842477 11842742 -90030427 - AluSc SINE Alu -18 291 1 307 191 0 0 chr13 11842742 11842805 -90030364 + MLT1F1 LTR MaLR 500 562 -5 1601 90 98 37 chr13 11842810 11843083 -90030086 - AluSc SINE Alu 0 309 30 2214 96 7 3 chr13 11843270 11843562 -90029607 + AluSc SINE Alu 1 293 -16 334 156 0 0 chr13 11843573 11843632 -90029537 - AluSc SINE Alu -253 50 3 1036 262 166 55 chr13 11843634 11844372 -90028797 - L2 LINE L2 0 3313 2658 1763 154 10 7 chr13 11844372 11844664 -90028505 - AluJb SINE Alu -1 311 19 1036 262 166 55 chr13 11844664 11844699 -90028470 - L2 LINE L2 -655 2658 2628 2337 78 10 3 chr13 11844699 11845005 -90028164 - AluY SINE Alu -3 308 1 1036 262 166 55 chr13 11845005 11845280 -90027889 - L2 LINE L2 -685 2628 2139 989 151 58 10 chr13 11845487 11845693 -90027476 - MER69 DNA AcHobo -1 2525 2310 2145 129 0 7 chr13 11845749 11846058 -90027111 - AluSc SINE Alu -1 308 2 790 30 0 10 chr13 11846303 11846402 -90026767 + L1MB2 LINE L1 6030 6127 -44 2107 115 3 42 chr13 11846405 11846717 -90026452 + AluSc SINE Alu 1 300 -9 2379 89 3 0 chr13 11846729 11847021 -90026148 + AluSq SINE Alu 1 293 -20 3515 69 22 47 chr13 11847030 11847145 -90026024 + L1PA11 LINE L1 5672 5788 -386 2129 113 0 7 chr13 11847145 11847455 -90025714 + AluSg SINE Alu 1 308 0 3515 69 22 47 chr13 11847455 11847615 -90025554 + L1PA11 LINE L1 5788 5951 -223 2384 72 3 10 chr13 11847615 11847920 -90025249 + AluSp SINE Alu 2 304 -9 3515 69 22 47 chr13 11847920 11848150 -90025019 + L1PA11 LINE L1 5951 6166 -8 22 35 0 0 chr13 11848150 11848179 -90024990 + AT_rich Low_complexity Low_complexity 1 29 0 2388 50 0 57 chr13 11848191 11848509 -90024660 + AluY SINE Alu 1 300 -11 189 0 0 0 chr13 11848525 11848546 -90024623 + (A)n Simple_repeat Simple_repeat 1 21 0 816 118 47 0 chr13 11848553 11848680 -90024489 + AluSq/x SINE Alu 1 133 -180 2575 74 0 0 chr13 11848684 11848993 -90024176 + AluSg1 SINE Alu 1 309 0 738 193 0 3 chr13 11849004 11849124 -90024045 + L1PA16 LINE L1 5817 5923 -243 2298 64 4 0 chr13 11849124 11849404 -90023765 + AluSx SINE Alu 1 281 -31 738 193 0 3 chr13 11849404 11849418 -90023751 + L1PA16 LINE L1 5923 5936 -230 1629 150 8 0 chr13 11849461 11849707 -90023462 + AluSq SINE Alu 1 248 -65 2124 97 14 7 chr13 11849878 11850168 -90023001 + AluY SINE Alu 1 292 -19 340 174 76 22 chr13 11850254 11850346 -90022823 + L1MC5 LINE L1 7827 7923 -38 267 29 0 0 chr13 11850349 11850373 -90022796 + (T)n Simple_repeat Simple_repeat 1 27 -7 1672 180 0 36 chr13 11850373 11850512 -90022657 + AluJo SINE Alu 1 143 -169 2254 120 3 0 chr13 11850512 11850821 -90022348 + AluSp SINE Alu 1 310 -3 1672 180 0 36 chr13 11850821 11850986 -90022183 + AluJo SINE Alu 143 294 -18 267 29 0 0 chr13 11850986 11850995 -90022174 + (T)n Simple_repeat Simple_repeat 26 34 0 23 33 0 0 chr13 11851045 11851075 -90022094 + AT_rich Low_complexity Low_complexity 1 30 0 269 269 115 38 chr13 11851524 11851695 -90021474 - MLT1J LTR MaLR -9 481 258 1746 179 71 0 chr13 11851807 11852131 -90021038 + MER7A DNA MER2_type 1 345 -1 264 303 74 0 chr13 11852402 11852524 -90020645 + MIR SINE MIR 132 262 0 375 317 8 8 chr13 11852533 11852656 -90020513 + MIR SINE MIR 10 132 -130 249 289 24 0 chr13 11852674 11852757 -90020412 - L1ME4a LINE L1 -86 6035 5951 2073 152 118 26 chr13 11853036 11853451 -90019718 + MLT1C LTR MaLR 15 467 0 262 335 62 6 chr13 11854501 11854662 -90018507 - L1MC5 LINE L1 -49 7912 7743 898 169 17 11 chr13 11854664 11854841 -90018328 - L1MB7 LINE L1 -11 6173 5996 929 63 0 24 chr13 11854946 11855072 -90018097 - AluSg/x SINE Alu -14 296 174 665 181 74 124 chr13 11855080 11855344 -90017825 - L1MC5 LINE L1 -307 7654 7409 2251 104 0 0 chr13 11855344 11855666 -90017503 - AluSx SINE Alu 0 322 1 665 181 74 124 chr13 11855666 11855763 -90017406 - L1MC5 LINE L1 -552 7409 7309 1657 194 7 13 chr13 11855848 11856158 -90017011 - AluJo SINE Alu -4 308 1 2345 80 3 13 chr13 11856172 11856472 -90016697 - AluSg SINE Alu -13 297 1 709 192 137 0 chr13 11856604 11856750 -90016419 + FAM SINE Alu 4 169 -6 1302 256 58 23 chr13 11856941 11857339 -90015830 - L1ME4a LINE L1 -273 5889 5478 415 117 0 0 chr13 11858110 11858170 -90014999 + AluS SINE Alu 2 61 -257 2283 105 3 3 chr13 11858423 11858728 -90014441 - AluSg1 SINE Alu -3 306 2 1979 130 18 0 chr13 11858730 11859006 -90014163 - AluSx SINE Alu -31 281 1 3353 119 73 16 chr13 11859243 11859285 -90013884 - L1MB2 LINE L1 -7 6164 6126 2341 102 3 0 chr13 11859285 11859589 -90013580 - AluSx SINE Alu -7 305 1 3353 119 73 16 chr13 11859589 11860124 -90013045 - L1MB2 LINE L1 -45 6126 5554 270 344 152 7 chr13 11860261 11860412 -90012757 - MIR3 SINE MIR -6 202 30 227 259 119 28 chr13 11862085 11862228 -90010941 + MIR3 SINE MIR 44 199 -9 2237 254 60 8 chr13 11862630 11863284 -90009885 - L1ME3 LINE L1 -1 6161 5474 2605 66 0 0 chr13 11863398 11863702 -90009467 - AluSx SINE Alu -8 304 1 211 268 28 56 chr13 11864031 11864102 -90009067 + L3 LINE CR1 1507 1575 -2 231 36 0 0 chr13 11864465 11864493 -90008676 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1653 174 50 17 chr13 11864493 11864792 -90008377 - AluJb SINE Alu -2 310 2 2166 117 17 0 chr13 11865003 11865293 -90007876 + AluSx SINE Alu 1 295 -17 1863 170 3 0 chr13 11865373 11865662 -90007507 - AluJb SINE Alu -22 290 1 2389 83 0 0 chr13 11866161 11866450 -90006719 + AluSc SINE Alu 1 289 -20 21 0 0 0 chr13 11866910 11866931 -90006238 + AT_rich Low_complexity Low_complexity 1 21 0 1929 170 0 3 chr13 11866934 11867245 -90005924 + AluJo SINE Alu 1 310 -2 215 231 58 0 chr13 11867598 11867650 -90005519 + MIR SINE MIR 106 160 -102 180 241 0 0 chr13 11867768 11867826 -90005343 + CT-rich Low_complexity Low_complexity 1 58 0 443 353 112 31 chr13 11867826 11868149 -90005020 - L2 LINE L2 -6 3266 2918 681 158 108 17 chr13 11868387 11868507 -90004662 + FLAM_A SINE Alu 1 131 -2 2136 129 0 13 chr13 11868509 11868819 -90004350 + AluJb SINE Alu 1 306 -6 577 212 72 52 chr13 11868980 11869173 -90003996 - L2 LINE L2 -567 2747 2551 1126 129 0 6 chr13 11869194 11869357 -90003812 + FRAM SINE Alu 1 153 -23 9729 194 27 12 chr13 11869790 11871153 -90002016 - L1P LINE L1 -966 5180 3774 1671 185 10 7 chr13 11871153 11871461 -90001708 - AluJb SINE Alu -3 309 1 9729 194 27 12 chr13 11871461 11872141 -90001028 - L1P LINE L1 -2372 3774 3106 188 159 0 23 chr13 11872431 11872475 -90000694 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 897 174 12 12 chr13 11872557 11872724 -90000445 - AluSg/x SINE Alu -5 307 141 206 269 0 19 chr13 11873410 11873462 -89999707 + C-rich Low_complexity Low_complexity 6 56 0 183 358 45 0 chr13 11873991 11874058 -89999111 + L3 LINE CR1 189 258 -1319 241 301 33 85 chr13 11874108 11874261 -89998908 - L2 LINE L2 0 3313 3169 278 277 96 11 chr13 11874425 11874519 -89998650 + MIR SINE MIR 71 172 -90 2174 89 7 7 chr13 11874593 11874884 -89998285 + AluSx SINE Alu 1 291 -21 2290 85 17 3 chr13 11875028 11875321 -89997848 + AluSg SINE Alu 1 297 -13 1352 199 13 23 chr13 11875378 11875680 -89997489 + AluJo SINE Alu 1 299 -13 2171 112 0 3 chr13 11875969 11876256 -89996913 + AluSx SINE Alu 1 286 -26 1298 179 47 21 chr13 11876364 11876643 -89996526 + AluJb SINE Alu 12 297 -15 2051 105 3 49 chr13 11876909 11877213 -89995956 + AluSx SINE Alu 1 290 -22 2467 63 3 0 chr13 11877752 11878052 -89995117 - AluSx SINE Alu -11 301 1 1666 165 33 0 chr13 11878237 11878534 -89994635 - AluJo SINE Alu 0 306 1 792 176 0 0 chr13 11878538 11878663 -89994506 - FLAM_A SINE Alu 0 142 18 25 31 0 0 chr13 11878689 11878721 -89994448 + AT_rich Low_complexity Low_complexity 1 32 0 1618 197 0 14 chr13 11879007 11879143 -89994026 + AluJo SINE Alu 1 137 -175 2043 125 0 7 chr13 11879143 11879439 -89993730 + AluSx SINE Alu 1 294 -18 1618 197 0 14 chr13 11879439 11879597 -89993572 + AluJo SINE Alu 137 291 -21 2042 123 3 25 chr13 11879624 11879941 -89993228 + AluSx SINE Alu 1 310 -2 619 281 152 44 chr13 11880468 11880810 -89992359 - MLT2F LTR ERVL -8 655 277 539 269 7 14 chr13 11880889 11881030 -89992139 - MLT2F LTR ERVL -523 140 1 312 167 174 45 chr13 11881035 11881167 -89992002 - ERVL-F LTR ERVL -21 5743 5595 3244 179 16 9 chr13 11881378 11881954 -89991215 + MER6A DNA MER2_type 26 605 0 1045 233 52 0 chr13 11881955 11882204 -89990965 - ERVL-F LTR ERVL -434 5330 5069 1287 166 0 9 chr13 11882206 11882417 -89990752 - AluJo SINE Alu -18 294 86 257 295 116 9 chr13 11882422 11882534 -89990635 - ERVL-F LTR ERVL -623 5031 4908 298 251 48 126 chr13 11882666 11882833 -89990336 - MLT1G1 LTR MaLR -2 593 440 851 309 22 7 chr13 11882907 11883176 -89989993 - MLT1G1 LTR MaLR -187 408 136 1934 124 4 0 chr13 11883315 11883580 -89989589 - AluSx SINE Alu -46 266 1 1084 99 7 0 chr13 11883594 11883746 -89989423 - L1MA4A LINE L1 -5 6298 6146 552 61 10 29 chr13 11883746 11883827 -89989342 + L1M3 LINE L1 5357 5438 -777 636 92 71 0 chr13 11883827 11883917 -89989252 + L1MA7 LINE L1 6178 6282 -9 552 61 10 29 chr13 11883917 11883961 -89989208 + L1M3 LINE L1 5438 5481 -734 * 2830 201 25 66 chr13 11883936 11884089 -89989080 + L1ME1 LINE L1 5295 5453 -713 1705 174 30 7 chr13 11884089 11884393 -89988776 + AluJb SINE Alu 1 311 -1 2830 201 25 66 chr13 11884393 11885038 -89988131 + L1ME1 LINE L1 5453 6060 -106 1875 155 3 19 chr13 11885053 11885370 -89987799 - AluJo SINE Alu 0 312 1 28 71 0 0 chr13 11885451 11885507 -89987662 + AT_rich Low_complexity Low_complexity 1 56 0 1564 183 45 3 chr13 11885891 11886180 -89986989 + AluJo SINE Alu 1 301 -11 23 33 0 0 chr13 11886377 11886407 -89986762 + AT_rich Low_complexity Low_complexity 1 30 0 183 254 182 18 chr13 11886560 11886615 -89986554 + MIR SINE MIR 85 148 -60 1760 138 28 14 chr13 11887696 11887986 -89985183 + AluJb SINE Alu 13 306 -6 421 198 179 9 chr13 11888104 11888210 -89984959 + MER5C DNA MER1_type 1 124 -200 456 171 23 78 chr13 11890258 11890270 -89982899 + L1MA9 LINE L1 6117 6128 -184 183 42 0 0 chr13 11890270 11890294 -89982875 + (GA)n Simple_repeat Simple_repeat 2 25 0 456 171 23 78 chr13 11890294 11890410 -89982759 + L1MA9 LINE L1 6128 6238 -74 271 152 15 15 chr13 11890459 11890525 -89982644 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 249 158 12 122 chr13 11890529 11890611 -89982558 + L1MA9 LINE L1 6228 6300 -12 293 288 131 12 chr13 11890620 11890698 -89982471 + HAL1 LINE L1 91 158 -2349 731 194 8 22 chr13 11890698 11890832 -89982337 + FLAM_C SINE Alu 2 133 0 293 288 131 12 chr13 11890832 11890913 -89982256 + HAL1 LINE L1 158 269 -2238 313 188 62 0 chr13 11890957 11891021 -89982148 + HAL1 LINE L1 637 704 -1803 833 219 70 32 chr13 11891022 11891352 -89981817 + HAL1 LINE L1 748 1462 -1045 2244 85 0 47 chr13 11891363 11891681 -89981488 + AluSx SINE Alu 1 303 -9 775 172 0 0 chr13 11891745 11891873 -89981296 - MER3 DNA MER1_type -81 128 1 2104 108 14 89 chr13 11892430 11892555 -89980614 + MER2 DNA MER2_type 2 135 -209 1783 164 7 3 chr13 11892555 11892841 -89980328 - AluJb SINE Alu -25 287 1 2104 108 14 89 chr13 11892841 11893086 -89980083 + MER2 DNA MER2_type 135 344 0 330 368 134 9 chr13 11893222 11893676 -89979493 + L2 LINE L2 2365 2875 -439 1604 149 0 41 chr13 11893796 11894065 -89979104 + AluJb SINE Alu 1 258 -54 353 137 0 0 chr13 11894065 11894116 -89979053 - Alu SINE Alu -249 52 2 845 109 8 31 chr13 11894160 11894288 -89978881 - AluSq/x SINE Alu -187 125 1 404 93 0 0 chr13 11894288 11894342 -89978827 - MSTB LTR MaLR -372 54 1 206 122 0 20 chr13 11894603 11894652 -89978517 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 2017 93 11 4 chr13 11895350 11895620 -89977549 + AluSp SINE Alu 1 272 -41 3538 203 57 52 chr13 11895620 11896691 -89976478 - L1MC4a LINE L1 -405 7403 6339 1037 153 174 116 chr13 11896691 11896816 -89976353 - AluJo SINE Alu -9 293 177 225 0 0 0 chr13 11896816 11896841 -89976328 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1037 153 174 116 chr13 11896841 11896990 -89976179 - AluJo SINE Alu -125 177 3 1985 147 0 0 chr13 11896990 11897313 -89975856 - AluJo SINE Alu 0 323 1 3538 203 57 52 chr13 11897313 11898082 -89975087 - L1MC4a LINE L1 -1469 6339 5375 2226 111 0 0 chr13 11898082 11898380 -89974789 - AluSg1 SINE Alu -11 298 1 3538 203 57 52 chr13 11898380 11898501 -89974668 - L1MC4a LINE L1 -2433 5375 5256 863 173 0 0 chr13 11898555 11898682 -89974487 - FLAM_A SINE Alu -6 127 1 198 0 0 0 chr13 11899167 11899189 -89973980 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2179 104 0 3 chr13 11899189 11899476 -89973693 - AluSx SINE Alu -26 286 1 1859 119 48 104 chr13 11899673 11899913 -89973256 - MLT1B LTR MaLR -3 387 176 2077 117 3 3 chr13 11899913 11900212 -89972957 - AluSq SINE Alu -14 299 1 1859 119 48 104 chr13 11900212 11900365 -89972804 - MLT1B LTR MaLR -214 176 16 21 0 0 0 chr13 11900422 11900443 -89972726 + AT_rich Low_complexity Low_complexity 1 21 0 1750 164 0 17 chr13 11900890 11901189 -89971980 - AluJb SINE Alu -18 294 1 490 188 121 54 chr13 11901255 11901326 -89971843 + L1MC2 LINE L1 6073 6138 -206 1785 136 11 7 chr13 11901326 11901598 -89971571 - AluSx SINE Alu -39 273 1 490 188 121 54 chr13 11901598 11901675 -89971494 + L1MC2 LINE L1 6138 6231 -113 2386 46 39 26 chr13 11901919 11902225 -89970944 + AluY SINE Alu 2 311 0 1723 166 17 24 chr13 11902238 11902533 -89970636 + AluSx SINE Alu 1 293 -19 588 213 66 0 chr13 11902544 11902666 -89970503 - MLT-int LTR MaLR -1218 517 388 812 150 48 27 chr13 11902676 11902823 -89970346 - MLT1A1 LTR MaLR -215 150 1 1244 167 46 5 chr13 11902844 11903060 -89970109 - MER46A DNA MER2_type 0 236 12 2252 107 7 0 chr13 11903121 11903410 -89969759 + AluSx SINE Alu 3 293 -19 2334 98 0 0 chr13 11903419 11903714 -89969455 + AluY SINE Alu 1 295 -16 3450 191 18 39 chr13 11903714 11904570 -89968599 - L1ME1 LINE L1 -139 6027 5155 2280 84 7 3 chr13 11904570 11904868 -89968301 + AluSg SINE Alu 1 299 -11 2242 111 0 0 chr13 11904875 11905163 -89968006 + AluSx SINE Alu 11 298 -14 3450 191 18 39 chr13 11905163 11905205 -89967964 - L1ME1 LINE L1 -1017 5149 5141 * 4748 239 45 62 chr13 11905203 11906119 -89967050 + L1MEc LINE L1 612 1542 -4673 1481 181 0 0 chr13 11906119 11906357 -89966812 + AluJo SINE Alu 37 274 -38 4748 239 45 62 chr13 11906357 11906510 -89966659 + L1MEc LINE L1 1542 1696 -4519 1893 151 4 0 chr13 11906510 11906789 -89966380 + AluSx SINE Alu 5 284 -28 396 0 0 0 chr13 11906789 11906833 -89966336 + (CA)n Simple_repeat Simple_repeat 2 45 0 4748 239 45 62 chr13 11906833 11907495 -89965674 + L1MEc LINE L1 1695 2367 -3848 852 181 0 0 chr13 11907495 11907622 -89965547 - FLAM_C SINE Alu -6 127 1 4748 239 45 62 chr13 11907622 11908079 -89965090 + L1MEc LINE L1 2367 2830 -3385 2173 107 10 3 chr13 11908079 11908389 -89964780 - AluSx SINE Alu 0 312 1 4748 239 45 62 chr13 11908389 11908459 -89964710 + L1MEc LINE L1 2830 2822 -3393 2640 33 0 0 chr13 11908459 11908759 -89964410 - AluY SINE Alu -11 300 1 4748 239 45 62 chr13 11908759 11908824 -89964345 + L1MEc LINE L1 2821 2886 -3329 325 113 0 81 chr13 11908827 11908889 -89964280 + AluJb SINE Alu 86 142 -160 935 174 40 30 chr13 11908893 11909094 -89964075 + AluJb SINE Alu 100 302 -10 36 0 0 0 chr13 11909117 11909153 -89964016 + AT_rich Low_complexity Low_complexity 1 36 0 1134 200 5 9 chr13 11909169 11909379 -89963790 + AluJo SINE Alu 10 218 -94 4853 229 61 58 chr13 11909416 11910310 -89962859 + L1MEc LINE L1 3159 4048 -2167 1618 166 0 46 chr13 11910310 11910447 -89962722 + AluJb SINE Alu 1 143 -169 2320 73 0 11 chr13 11910447 11910782 -89962387 + AluY SINE Alu 1 332 0 1618 166 0 46 chr13 11910782 11910950 -89962219 + AluJb SINE Alu 143 293 -19 4853 229 61 58 chr13 11910950 11910990 -89962179 + L1MEc LINE L1 4048 4086 -2129 1519 188 0 41 chr13 11910990 11911283 -89961886 + AluJo SINE Alu 1 281 -31 4853 229 61 58 chr13 11911283 11911298 -89961871 + L1MEc LINE L1 4086 4099 -2116 2209 123 7 0 chr13 11911298 11911608 -89961561 + AluSx SINE Alu 1 312 0 4853 229 61 58 chr13 11911608 11912931 -89960238 + L1MEc LINE L1 4099 5370 -845 446 122 68 0 chr13 11912924 11912998 -89960171 + L1MA7 LINE L1 6025 6103 -188 * 1824 165 47 60 chr13 11912998 11913055 -89960114 + MSTB1 LTR MaLR 1 57 -375 2244 112 0 0 chr13 11913055 11913359 -89959810 - AluSx SINE Alu -8 304 1 1824 165 47 60 chr13 11913359 11913584 -89959585 + MSTB1 LTR MaLR 57 283 -149 3005 73 3 0 chr13 11913584 11913938 -89959231 + THE1A LTR MaLR 1 355 0 12591 87 4 6 chr13 11913938 11914441 -89958728 + THE1A-int LTR MaLR 1 504 -1076 2258 121 0 0 chr13 11914441 11914748 -89958421 + AluSg SINE Alu 1 307 -3 12591 87 4 6 chr13 11914748 11915828 -89957341 + THE1A-int LTR MaLR 504 1580 0 2858 68 0 66 chr13 11915828 11916208 -89956961 + THE1A LTR MaLR 1 355 0 1824 165 47 60 chr13 11916208 11916304 -89956865 + MSTB1 LTR MaLR 280 377 -55 636 171 22 28 chr13 11916313 11916494 -89956675 + CT-rich Low_complexity Low_complexity 1 180 0 1882 135 4 4 chr13 11916525 11916785 -89956384 - AluJb SINE Alu -30 282 23 1427 169 28 106 chr13 11916813 11917173 -89955996 + MLT2B3 LTR ERVL 223 554 0 2167 125 0 3 chr13 11917356 11917659 -89955510 + AluSx SINE Alu 1 302 -10 207 100 0 0 chr13 11917765 11917795 -89955374 + (T)n Simple_repeat Simple_repeat 1 30 0 2006 111 0 83 chr13 11917825 11918149 -89955020 - AluSx SINE Alu -15 297 1 2083 120 0 10 chr13 11918248 11918582 -89954587 - AluSc SINE Alu 0 309 1 22 0 0 0 chr13 11918591 11918613 -89954556 + AT_rich Low_complexity Low_complexity 1 22 0 717 227 20 0 chr13 11919234 11919384 -89953785 - AluJo SINE Alu -142 170 18 396 276 184 7 chr13 11919530 11919682 -89953487 - MER5A DNA MER1_type 0 189 11 2249 89 11 0 chr13 11919717 11920029 -89953140 - AluSp SINE Alu 0 315 1 843 129 0 57 chr13 11920044 11920184 -89952985 - FLAM_C SINE Alu 0 133 2 2187 119 3 10 chr13 11920193 11920504 -89952665 - AluSq SINE Alu -4 309 1 476 235 100 71 chr13 11921171 11921340 -89951829 + MIR SINE MIR 2 174 -62 1292 149 5 28 chr13 11921348 11921562 -89951607 + MER3 DNA MER1_type 1 209 0 214 208 0 42 chr13 11922429 11922477 -89950692 + CT-rich Low_complexity Low_complexity 3 48 0 694 268 218 9 chr13 11922654 11922971 -89950198 + L3 LINE CR1 862 1244 -333 313 312 0 64 chr13 11923082 11923239 -89949930 + L3 LINE CR1 1246 1392 -185 1090 192 144 19 chr13 11923407 11923678 -89949491 - MER93b LTR ERV1 0 373 69 586 198 9 0 chr13 11924025 11924136 -89949033 - L1MA10 LINE L1 -1 6333 6222 21 0 0 0 chr13 11925853 11925874 -89947295 + AT_rich Low_complexity Low_complexity 1 21 0 902 145 0 36 chr13 11926117 11926255 -89946914 - FLAM_C SINE Alu 0 133 1 301 266 64 0 chr13 11926269 11926378 -89946791 + L1ME4a LINE L1 6001 6116 -5 23 33 0 0 chr13 11927170 11927200 -89945969 + AT_rich Low_complexity Low_complexity 1 30 0 1560 163 14 54 chr13 11927423 11927717 -89945452 + AluJb SINE Alu 1 282 -30 242 221 47 23 chr13 11929467 11929553 -89943616 + L1ME4a LINE L1 6031 6118 -3 2375 103 82 10 chr13 11929688 11930076 -89943093 + LTR56 LTR ERV1 9 424 -21 663 180 82 0 chr13 11930078 11930200 -89942969 - FLAM_C SINE Alu -11 132 1 308 109 0 0 chr13 11930202 11930248 -89942921 + LTR23 LTR ERV1 391 436 -1 410 250 96 32 chr13 11930322 11930478 -89942691 + L1MC5 LINE L1 7752 7917 -44 2360 79 0 3 chr13 11930514 11930806 -89942363 - AluY SINE Alu -20 291 1 319 194 32 97 chr13 11930829 11930922 -89942247 + MER21B LTR ERV1 1 87 -776 2450 239 132 19 chr13 11930976 11931724 -89941445 + MER21B LTR ERV1 19 851 -12 2346 104 3 0 chr13 11931884 11932191 -89940978 + AluSp SINE Alu 1 308 -5 198 0 0 0 chr13 11932245 11932267 -89940902 + (ATG)n Simple_repeat Simple_repeat 3 24 0 2194 103 0 0 chr13 11932899 11933213 -89939956 - AluSg SINE Alu 0 314 1 26 0 0 0 chr13 11933368 11933394 -89939775 + AT_rich Low_complexity Low_complexity 1 26 0 356 309 41 55 chr13 11933821 11933988 -89939181 + L3 LINE CR1 1341 1506 -71 207 0 0 0 chr13 11933988 11934011 -89939158 + (TG)n Simple_repeat Simple_repeat 1 23 0 356 309 41 55 chr13 11934011 11934063 -89939106 + L3 LINE CR1 1506 1557 -20 2291 108 0 9 chr13 11934790 11935106 -89938063 + AluSq SINE Alu 1 313 0 2526 57 0 7 chr13 11935340 11935638 -89937531 + AluY SINE Alu 1 296 -15 2340 109 0 0 chr13 11935649 11935960 -89937209 + AluSx SINE Alu 1 311 -1 911 223 86 9 chr13 11936012 11936245 -89936924 + MIR SINE MIR 2 252 -10 205 213 0 27 chr13 11936609 11936684 -89936485 + T-rich Low_complexity Low_complexity 3 75 0 351 305 93 20 chr13 11938010 11938161 -89935008 + L2 LINE L2 3140 3301 -12 2033 150 0 6 chr13 11939445 11939758 -89933411 - AluJb SINE Alu -1 311 1 418 322 26 13 chr13 11939957 11940109 -89933060 + MER5A DNA MER1_type 7 160 -29 1639 143 23 97 chr13 11940126 11940290 -89932879 + MER33 DNA MER1_type 1 127 -2458 1877 165 7 0 chr13 11940290 11940593 -89932576 + AluJb SINE Alu 1 305 -7 1639 143 23 97 chr13 11940593 11940778 -89932391 + MER33 DNA MER1_type 127 324 0 963 190 67 10 chr13 11941034 11941229 -89931940 - MER20 DNA MER1_type 0 219 14 180 0 0 0 chr13 11941231 11941251 -89931918 + (T)n Simple_repeat Simple_repeat 1 20 0 2235 99 20 3 chr13 11941316 11941608 -89931561 - AluSx SINE Alu -15 297 1 2357 95 0 13 chr13 11942704 11943019 -89930150 - AluSx SINE Alu -1 311 1 2089 83 0 107 chr13 11943020 11943356 -89929813 - AluSg SINE Alu -10 300 1 804 153 16 0 chr13 11943358 11943482 -89929687 - FLAM_A SINE Alu -5 128 3 230 204 74 28 chr13 11943496 11943604 -89929565 - L1MC4 LINE L1 0 8042 7813 199 243 162 27 chr13 11944535 11944609 -89928560 - MIR SINE MIR -18 244 161 314 227 73 60 chr13 11944805 11944955 -89928214 - L1ME4a LINE L1 -225 5896 5745 318 26 0 0 chr13 11944997 11945036 -89928133 + (TTA)n Simple_repeat Simple_repeat 1 39 0 5314 149 54 27 chr13 11945247 11945638 -89927531 + L1PA15 LINE L1 4998 5377 -788 2436 74 0 3 chr13 11945638 11945936 -89927233 + AluY SINE Alu 1 297 -14 5314 149 54 27 chr13 11945936 11946493 -89926676 + L1PA15 LINE L1 5377 5980 -185 2223 104 3 3 chr13 11946493 11946790 -89926379 - AluSp SINE Alu -16 297 1 5314 149 54 27 chr13 11946790 11946966 -89926203 + L1PA15 LINE L1 5980 6150 -15 2100 123 3 25 chr13 11946967 11947284 -89925885 - AluSx SINE Alu -2 310 1 2190 176 41 22 chr13 11948244 11948660 -89924509 - MLT1C LTR MaLR -43 424 1 21 36 0 0 chr13 11948982 11949010 -89924159 + AT_rich Low_complexity Low_complexity 1 28 0 293 338 121 6 chr13 11949159 11949316 -89923853 - MIR SINE MIR -83 179 5 196 245 0 20 chr13 11949390 11949439 -89923730 + MIR SINE MIR 100 147 -61 1705 114 153 4 chr13 11949445 11949700 -89923469 + AluSx SINE Alu 2 294 -8 875 200 19 7 chr13 11949739 11949894 -89923275 + FRAM SINE Alu 1 157 -9 519 160 0 0 chr13 11950016 11950091 -89923078 + AluJo SINE Alu 2 76 -236 620 191 0 0 chr13 11950093 11950187 -89922982 - AluJb SINE Alu -20 292 199 330 74 111 19 chr13 11950187 11950241 -89922928 + AluJo SINE Alu 76 134 -168 486 314 67 22 chr13 11950464 11950687 -89922482 - MIR SINE MIR -21 241 9 927 163 39 28 chr13 11950958 11951136 -89922033 + AluYa5 SINE Alu 112 291 -20 337 239 33 19 chr13 11951138 11951279 -89921890 - L1MB7 LINE L1 -5 6179 6037 265 322 0 0 chr13 11951343 11951402 -89921767 - MIR SINE MIR -156 106 48 384 219 75 62 chr13 11951611 11951771 -89921398 - MER103 DNA DNA -1 165 4 2235 106 3 0 chr13 11951953 11952246 -89920923 - AluSg SINE Alu -16 294 1 864 154 0 22 chr13 11952327 11952463 -89920706 - FLAM_C SINE Alu 0 133 1 300 294 101 0 chr13 11952520 11952629 -89920540 + MIR SINE MIR 59 178 -84 1476 208 27 53 chr13 11952682 11953057 -89920112 - MLT1A1 LTR MaLR 0 365 1 4134 230 81 31 chr13 11953057 11954099 -89919070 - MLT1A1-int LTR MaLR 0 1735 642 397 304 0 0 chr13 12004302 12004394 -89868775 + L2 LINE L2 3175 3266 -6 1708 191 0 25 chr13 12004652 12004971 -89868198 + AluJb SINE Alu 1 311 -1 958 221 5 0 chr13 12005354 12005544 -89867625 + AluJo SINE Alu 118 308 -4 2167 116 3 13 chr13 12005734 12006045 -89867124 + AluSq SINE Alu 1 308 -5 1124 158 19 10 chr13 12006293 12006502 -89866667 - 7SLRNA srpRNA srpRNA -93 227 17 185 336 100 55 chr13 12006729 12006949 -89866220 + L2 LINE L2 3080 3309 -4 755 183 16 0 chr13 12007172 12007298 -89865871 + FLAM_A SINE Alu 2 129 -4 900 146 0 6 chr13 12007641 12008001 -89865168 + (TATATG)n Simple_repeat Simple_repeat 3 536 0 763 208 69 135 chr13 12008035 12008184 -89864985 + MIR SINE MIR 2 126 -136 2536 93 0 0 chr13 12008184 12008496 -89864673 + AluSx SINE Alu 1 312 0 763 208 69 135 chr13 12008496 12008620 -89864549 + MIR SINE MIR 126 257 -5 236 162 0 44 chr13 12009500 12009568 -89863601 + L1MB8 LINE L1 6108 6172 -6 720 211 5 98 chr13 12009765 12009942 -89863227 + FRAM SINE Alu 1 160 -152 2029 111 0 0 chr13 12009942 12010203 -89862966 + AluSq SINE Alu 2 262 -51 720 211 5 98 chr13 12010203 12010219 -89862950 + FRAM SINE Alu 160 176 0 1190 162 162 59 chr13 12010270 12010541 -89862628 + AluJo SINE Alu 1 299 -3 342 332 91 15 chr13 12010804 12011003 -89862166 + MIR SINE MIR 35 248 -14 1803 161 31 0 chr13 12011006 12011323 -89861846 + L1MB3 LINE L1 5854 6180 -3 207 69 0 0 chr13 12012382 12012411 -89860758 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 204 40 0 0 chr13 12014026 12014051 -89859118 + (CAG)n Simple_repeat Simple_repeat 2 26 0 2440 65 3 0 chr13 12015785 12016079 -89857090 - AluSg SINE Alu -15 295 1 381 274 63 0 chr13 12016471 12016566 -89856603 + MIR3 SINE MIR 76 176 -32 1641 158 87 4 chr13 12017876 12018142 -89855027 - AluJo SINE Alu -24 288 1 906 110 17 0 chr13 12019711 12019884 -89853285 + (TA)n Simple_repeat Simple_repeat 1 176 0 200 176 0 0 chr13 12019888 12019922 -89853247 + (CA)n Simple_repeat Simple_repeat 1 34 0 315 279 140 0 chr13 12020011 12020147 -89853022 - MIR SINE MIR -13 249 95 2415 158 5 105 chr13 12020722 12020869 -89852300 - L1MA7 LINE L1 0 6291 6131 2246 104 0 3 chr13 12020869 12021158 -89852011 - AluSx SINE Alu -24 288 1 2415 158 5 105 chr13 12021158 12021551 -89851618 - L1MA7 LINE L1 -160 6131 5816 2151 133 0 0 chr13 12021551 12021845 -89851324 + AluSq SINE Alu 11 304 -9 2415 158 5 105 chr13 12021845 12021912 -89851257 - L1MA7 LINE L1 -475 5816 5744 1996 130 3 0 chr13 12022174 12022473 -89850696 + AluSx SINE Alu 3 302 -10 931 138 119 0 chr13 12022788 12022947 -89850222 - AluSg/x SINE Alu -5 307 130 279 265 57 0 chr13 12022993 12023082 -89850087 + MIR SINE MIR 53 147 -62 2355 93 0 13 chr13 12023527 12023827 -89849342 - AluSq SINE Alu -17 296 1 2357 67 17 3 chr13 12024411 12024710 -89848459 - AluY SINE Alu -8 303 1 305 236 16 16 chr13 12024749 12024872 -89848297 + (TA)n Simple_repeat Simple_repeat 2 124 0 21 36 0 0 chr13 12025642 12025670 -89847499 + AT_rich Low_complexity Low_complexity 1 28 0 2360 104 3 0 chr13 12025869 12026233 -89846936 - AluSg SINE Alu 0 365 1 241 263 53 0 chr13 12026326 12026402 -89846767 - MIR SINE MIR -115 147 68 23 0 0 0 chr13 12027501 12027524 -89845645 + GC_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr13 12029698 12029729 -89843440 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 12030609 12030638 -89842531 + GC_rich Low_complexity Low_complexity 1 29 0 484 240 49 67 chr13 12033972 12034197 -89838972 - MER112 DNA MER1_type -12 248 28 406 236 184 61 chr13 12034928 12035169 -89838000 - L2 LINE L2 -234 3038 2778 458 149 0 81 chr13 12035202 12035289 -89837880 - AluSg/x SINE Alu -12 297 218 33 25 0 0 chr13 12035291 12035331 -89837838 + AT_rich Low_complexity Low_complexity 1 40 0 1888 81 107 11 chr13 12035372 12035644 -89837525 + AluSx SINE Alu 1 298 -14 42 20 0 0 chr13 12035668 12035717 -89837452 + AT_rich Low_complexity Low_complexity 1 49 0 1231 263 37 34 chr13 12035856 12036263 -89836906 + MLT1E2 LTR MaLR 1 408 -218 252 190 9 155 chr13 12036292 12036328 -89836841 + MLT1E2 LTR MaLR 556 538 -88 7217 57 0 1 chr13 12036328 12037453 -89835716 + L1PA6 LINE L1 5030 6154 0 252 190 9 155 chr13 12037453 12037532 -89835637 + MLT1E2 LTR MaLR 537 626 0 579 266 58 34 chr13 12037536 12037743 -89835426 - MLT1J LTR MaLR -292 219 8 2184 117 3 7 chr13 12037785 12038083 -89835086 + AluSx SINE Alu 1 297 -15 331 268 58 65 chr13 12038373 12038511 -89834658 + MIR SINE MIR 59 195 -67 752 253 61 0 chr13 12038626 12038871 -89834298 - MER112 DNA MER1_type 0 260 1 2122 104 11 0 chr13 12039090 12039401 -89833768 - AluY SINE Alu 0 314 1 754 230 165 8 chr13 12039402 12039877 -89833292 + LTR50 LTR ERVL 7 653 -142 1546 95 41 0 chr13 12039878 12040099 -89833070 - MER30 DNA MER1_type 0 230 1 289 264 179 0 chr13 12040209 12040315 -89832854 + AluJo SINE Alu 8 132 -170 494 242 0 64 chr13 12040455 12040612 -89832557 + MLT1F LTR MaLR 1 147 -395 1076 169 17 6 chr13 12040617 12040794 -89832375 - AluJb SINE Alu -14 298 120 21 0 0 0 chr13 12041036 12041057 -89832112 + GC_rich Low_complexity Low_complexity 1 21 0 823 185 6 6 chr13 12041717 12042072 -89831097 + CT-rich Low_complexity Low_complexity 1 355 0 189 130 19 37 chr13 12042084 12042138 -89831031 + CT-rich Low_complexity Low_complexity 2 54 0 194 0 0 37 chr13 12042775 12042802 -89830367 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 957 91 8 0 chr13 12042846 12042967 -89830202 - AluSg/x SINE Alu -108 202 81 180 0 0 0 chr13 12043589 12043609 -89829560 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 506 335 61 22 chr13 12043716 12043946 -89829223 + MIR SINE MIR 24 262 0 324 291 215 12 chr13 12044519 12044691 -89828478 + MIR SINE MIR 20 226 -36 902 206 4 69 chr13 12048587 12048820 -89824349 - MIR SINE MIR -3 259 42 429 188 0 0 chr13 12048975 12049055 -89824114 + L1MA7 LINE L1 6060 6139 -152 783 214 0 66 chr13 12049342 12049360 -89823809 + AluJo SINE Alu 120 138 -174 2245 115 0 26 chr13 12049360 12049673 -89823496 + AluSg SINE Alu 1 305 -5 783 214 0 66 chr13 12049673 12049836 -89823333 + AluJo SINE Alu 138 289 -23 1981 110 22 0 chr13 12049888 12050190 -89822979 + AluSq SINE Alu 11 318 0 426 310 57 38 chr13 12050465 12050623 -89822546 + MIR SINE MIR 50 210 -52 1397 183 30 33 chr13 12050646 12050946 -89822223 - AluJo SINE Alu -13 299 1 3776 207 91 78 chr13 12051411 12051548 -89821621 - L1MCa LINE L1 -3875 2732 2598 2309 102 0 3 chr13 12051548 12051843 -89821326 - AluY SINE Alu -15 296 3 3776 207 91 78 chr13 12051843 12054150 -89819019 - L1MCa LINE L1 -4009 2598 266 3126 138 39 11 chr13 12054158 12054696 -89818473 + L1MB2 LINE L1 5617 6169 -2 3678 238 53 19 chr13 12054707 12056044 -89817125 - L1M4 LINE L1 -1538 4608 3202 562 172 72 129 chr13 12056044 12056117 -89817052 - MLT1D LTR MaLR -258 247 171 724 233 0 0 chr13 12056117 12056250 -89816919 - FLAM_A SINE Alu 0 133 1 562 172 72 129 chr13 12056250 12056385 -89816784 - MLT1D LTR MaLR -334 171 51 1820 146 91 0 chr13 12056555 12056842 -89816327 - AluSq SINE Alu 0 313 1 216 254 32 0 chr13 12056857 12056920 -89816249 + GA-rich Low_complexity Low_complexity 4 68 0 324 70 0 0 chr13 12056926 12056969 -89816200 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 268 250 44 0 chr13 12057146 12057214 -89815955 - L2 LINE L2 -12 3301 3231 2077 116 18 0 chr13 12057445 12057741 -89815428 + AluSx SINE Alu 1 301 0 1333 298 82 11 chr13 12057984 12058595 -89814574 + MLT2F LTR ERVL 4 657 -6 21 57 0 0 chr13 12060147 12060182 -89812987 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 12060675 12060696 -89812473 + AT_rich Low_complexity Low_complexity 1 21 0 306 141 141 0 chr13 12060723 12060794 -89812375 + L1MC4 LINE L1 7136 7216 -826 * 2003 165 18 17 chr13 12060784 12061202 -89811967 + L1MA6 LINE L1 5607 5949 -351 1802 139 3 63 chr13 12061730 12062046 -89811123 - AluJo SINE Alu -15 297 1 505 301 121 1 chr13 12062301 12062486 -89810683 + MIR SINE MIR 28 235 -27 1738 146 34 4 chr13 12062679 12062946 -89810223 + AluJo SINE Alu 19 293 -19 2336 106 0 0 chr13 12063154 12063447 -89809722 + AluSg SINE Alu 1 293 -17 249 184 66 105 chr13 12063587 12063605 -89809564 - L2 LINE L2 0 3313 3296 2124 137 0 0 chr13 12063605 12063934 -89809235 - AluSx SINE Alu 0 329 1 249 184 66 105 chr13 12063934 12063990 -89809179 - L2 LINE L2 -17 3296 3241 * 1362 319 187 15 chr13 12063980 12064775 -89808394 - L2 LINE L2 -1371 1943 1286 1661 183 62 0 chr13 12064775 12065065 -89808104 + AluJo SINE Alu 1 308 -4 1362 319 187 15 chr13 12065065 12065641 -89807528 - L2 LINE L2 -2028 1286 342 293 257 91 38 chr13 12065646 12065791 -89807378 - MER112 DNA MER1_type -37 223 62 342 0 0 0 chr13 12065791 12065829 -89807340 + (TG)n Simple_repeat Simple_repeat 2 39 0 293 257 91 38 chr13 12065829 12065893 -89807276 - MER112 DNA MER1_type -198 62 3 2643 204 107 60 chr13 12066125 12066895 -89806274 + MER21B LTR ERV1 14 819 -44 2297 111 0 3 chr13 12067462 12067769 -89805400 - AluSx SINE Alu -6 306 1 212 195 126 58 chr13 12067893 12067980 -89805189 - L2 LINE L2 -37 3276 3184 198 103 0 0 chr13 12069695 12069724 -89803445 + (A)n Simple_repeat Simple_repeat 1 29 0 2296 99 3 0 chr13 12070255 12070557 -89802612 + AluSx SINE Alu 1 303 -9 2748 152 27 6 chr13 12070566 12071054 -89802115 + L1MB3 LINE L1 5686 6183 0 280 300 0 0 chr13 12072415 12072505 -89800664 - MIR SINE MIR -54 208 119 1688 159 52 10 chr13 12072674 12072963 -89800206 - AluJo SINE Alu -11 301 1 530 307 132 41 chr13 12073055 12073661 -89799508 - L1MC4a LINE L1 -1768 6040 5380 618 263 11 17 chr13 12073859 12074034 -89799135 - MER5B DNA MER1_type -4 174 1 347 307 39 0 chr13 12074376 12074503 -89798666 - L2 LINE L2 0 3313 3182 315 122 0 0 chr13 12075866 12075915 -89797254 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 2407 78 3 0 chr13 12076152 12076447 -89796722 + AluY SINE Alu 1 296 -15 279 0 0 0 chr13 12076521 12076552 -89796617 + (CA)n Simple_repeat Simple_repeat 1 31 0 254 136 0 17 chr13 12077198 12077257 -89795912 + (GGA)n Simple_repeat Simple_repeat 3 60 0 1963 118 0 7 chr13 12080455 12080727 -89792442 + AluSx SINE Alu 31 300 -12 361 285 77 8 chr13 12081123 12081253 -89791916 - MIR SINE MIR -103 159 21 7183 44 0 5 chr13 12081404 12082509 -89790660 - L1PA6 LINE L1 0 6154 5039 1980 134 0 48 chr13 12082541 12082854 -89790315 - AluJo SINE Alu -14 298 1 1941 209 30 52 chr13 12083497 12083585 -89789584 + MLT1B-int LTR MaLR 941 1029 -342 2084 136 0 16 chr13 12083585 12083893 -89789276 + AluJo SINE Alu 2 304 -8 1941 209 30 52 chr13 12083893 12084100 -89789069 + MLT1B-int LTR MaLR 1029 1227 -144 2192 113 0 3 chr13 12084100 12084393 -89788776 - AluSq SINE Alu -21 292 1 1941 209 30 52 chr13 12084393 12084522 -89788647 + MLT1B-int LTR MaLR 1227 1357 -14 2124 133 7 83 chr13 12084527 12084710 -89788459 + MLT1B LTR MaLR 1 196 -194 2680 52 0 0 chr13 12084710 12085016 -89788153 + AluY SINE Alu 1 306 -5 2302 108 0 0 chr13 12085025 12085332 -89787837 + AluSx SINE Alu 1 307 -5 2124 133 7 83 chr13 12085332 12085559 -89787610 + MLT1B LTR MaLR 204 389 -1 1063 287 123 42 chr13 12085923 12086515 -89786654 + HAL1 LINE L1 16 655 -1852 1298 228 81 54 chr13 12086619 12087123 -89786046 + HAL1 LINE L1 848 1365 -1142 386 253 0 0 chr13 12087125 12087212 -89785957 - L2 LINE L2 0 3313 3227 948 283 42 36 chr13 12087224 12087609 -89785560 - L2 LINE L2 -701 2613 2227 335 23 23 0 chr13 12087920 12087964 -89785205 + (TG)n Simple_repeat Simple_repeat 2 46 0 273 291 67 0 chr13 12088005 12088184 -89784985 - L1M4 LINE L1 -1779 4367 4177 484 132 0 0 chr13 12088185 12088253 -89784916 + Tigger2 DNA MER2_type 1 68 -2650 * 2521 146 31 20 chr13 12088238 12088606 -89784563 + Tigger2 DNA MER2_type 2267 2642 -76 2516 127 2 10 chr13 12088606 12089001 -89784168 + L1MA5A LINE L1 5896 6287 -10 2521 146 31 20 chr13 12089001 12089078 -89784091 + Tigger2 DNA MER2_type 2642 2717 -1 2234 111 3 25 chr13 12090231 12090547 -89782622 + AluSx SINE Alu 1 309 -3 468 269 83 16 chr13 12092386 12092579 -89780590 - MIR SINE MIR -40 222 17 640 154 0 27 chr13 12092756 12092866 -89780303 - MER20 DNA MER1_type 0 219 113 1716 187 19 16 chr13 12093042 12093406 -89779763 - MLT1A1 LTR MaLR 0 365 1 2519 131 26 30 chr13 12093562 12093991 -89779178 + MSTA LTR MaLR 1 427 -1 2606 49 0 7 chr13 12095686 12095991 -89777178 - AluY SINE Alu -8 303 1 8127 120 84 91 chr13 12096831 12098541 -89774628 - pTR5 LTR ERV1 0 2438 741 258 309 151 0 chr13 12098569 12098695 -89774474 - MIR SINE MIR -117 145 1 489 229 210 25 chr13 12099416 12099573 -89773596 + MER5A DNA MER1_type 4 189 0 303 246 29 0 chr13 12099952 12100021 -89773148 - MIR SINE MIR -181 81 11 2303 78 6 38 chr13 12100079 12100398 -89772771 + AluSq SINE Alu 2 310 -3 450 0 0 0 chr13 12100833 12100883 -89772286 + (GA)n Simple_repeat Simple_repeat 1 50 0 494 258 96 12 chr13 12102438 12102605 -89770564 - MIR SINE MIR -74 188 8 1083 137 128 47 chr13 12102655 12102889 -89770280 - ORSL DNA AcHobo 0 275 23 2187 154 158 26 chr13 12103038 12103424 -89769745 - MLT2B2 LTR ERVL 0 515 59 2403 99 0 0 chr13 12103424 12103727 -89769442 + AluSg SINE Alu 1 303 -7 2187 154 158 26 chr13 12103727 12103795 -89769374 - MLT2B2 LTR ERVL -456 59 1 191 319 193 8 chr13 12103944 12104063 -89769106 + MIR SINE MIR 110 250 -12 3259 133 17 17 chr13 12104188 12104721 -89768448 + LTR10A LTR ERV1 13 545 -64 2396 75 7 0 chr13 12105474 12105768 -89767401 - AluY SINE Alu -15 296 1 339 303 37 0 chr13 12106104 12106213 -89766956 - L2 LINE L2 -4 3268 3156 2336 96 3 0 chr13 12106213 12106516 -89766653 - AluSp SINE Alu -9 304 1 1272 226 48 77 chr13 12106516 12106698 -89766471 - HAL1 LINE L1 -540 1967 1781 1548 172 111 0 chr13 12106698 12106873 -89766296 - AluJo SINE Alu -2 310 156 375 23 0 0 chr13 12106873 12106917 -89766252 + (CA)n Simple_repeat Simple_repeat 2 45 0 1548 172 111 0 chr13 12106917 12107020 -89766149 - AluJo SINE Alu -156 156 1 1272 226 48 77 chr13 12107020 12107253 -89765916 - HAL1 LINE L1 -726 1781 1564 482 240 74 50 chr13 12107250 12107585 -89765584 - HAL1 LINE L1 -1482 1025 651 * 1709 162 23 0 chr13 12107586 12107852 -89765317 + AluSx SINE Alu 1 272 -40 1773 128 4 0 chr13 12107854 12108104 -89765065 - AluSx SINE Alu -61 251 1 1016 276 89 31 chr13 12108230 12108646 -89764523 - HAL1 LINE L1 -2046 461 22 286 256 70 0 chr13 12109007 12109093 -89764076 + MIR SINE MIR 110 201 -61 2505 73 0 10 chr13 12109401 12109714 -89763455 - AluY SINE Alu -1 310 1 1899 152 0 7 chr13 12109961 12110257 -89762912 - AluJb SINE Alu -18 294 1 2377 97 0 3 chr13 12110457 12110768 -89762401 - AluSg SINE Alu 0 310 1 706 71 0 0 chr13 12111361 12111459 -89761710 + AluY SINE Alu 205 302 -9 1566 234 34 96 chr13 12111544 12111750 -89761419 + L1MEc LINE L1 37 254 -6142 2034 136 0 7 chr13 12111750 12112045 -89761124 - AluSx SINE Alu -19 293 1 1566 234 34 96 chr13 12112045 12112314 -89760855 + L1MEc LINE L1 254 474 -5922 2599 61 0 0 chr13 12112314 12112625 -89760544 - AluY SINE Alu 0 311 1 1566 234 34 96 chr13 12112625 12112709 -89760460 + L1MEc LINE L1 474 562 -5834 563 274 137 4 chr13 12112704 12112967 -89760202 + L1MEc LINE L1 1614 1911 -4485 * 2854 235 76 19 chr13 12112967 12113835 -89759334 + L1MEc LINE L1 2342 3270 -2945 2145 125 0 16 chr13 12113835 12114148 -89759021 - AluSx SINE Alu 0 312 5 2854 235 76 19 chr13 12114148 12114231 -89758938 + L1MEc LINE L1 3270 3347 -2868 2193 173 116 11 chr13 12114614 12114720 -89758449 - MLT1D LTR MaLR 0 505 412 2153 126 3 0 chr13 12114720 12115022 -89758147 + AluSx SINE Alu 1 303 -9 2193 173 116 11 chr13 12115022 12115372 -89757797 - MLT1D LTR MaLR -93 412 1 2193 133 0 7 chr13 12115856 12116164 -89757005 - AluSg SINE Alu -4 306 1 295 275 136 46 chr13 12116269 12116337 -89756832 + L1ME4a LINE L1 5353 5413 -708 1588 158 32 35 chr13 12116337 12116645 -89756524 + AluJb SINE Alu 1 307 0 295 275 136 46 chr13 12116645 12116920 -89756249 + L1ME4a LINE L1 5413 5728 -393 1861 186 14 6 chr13 12116952 12117307 -89755862 - MLT1A1 LTR MaLR -7 358 1 462 222 15 0 chr13 12117307 12117442 -89755727 + L1ME4a LINE L1 5738 5874 -247 270 0 0 0 chr13 12117489 12117519 -89755650 + (TC)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr13 12117518 12117544 -89755625 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 2312 109 3 0 chr13 12117547 12117851 -89755318 - AluSp SINE Alu -8 305 1 281 222 34 34 chr13 12118104 12118221 -89754948 + (CTATT)n Simple_repeat Simple_repeat 4 120 0 21 0 0 0 chr13 12118234 12118255 -89754914 + AT_rich Low_complexity Low_complexity 1 21 0 773 149 0 9 chr13 12118388 12118502 -89754667 - FLAM_C SINE Alu -24 119 7 200 310 35 35 chr13 12118507 12118594 -89754575 + L2 LINE L2 3227 3313 0 261 274 107 24 chr13 12118665 12118749 -89754420 + L2 LINE L2 3195 3285 -28 288 330 31 0 chr13 12118855 12118952 -89754217 + MIR SINE MIR 87 186 -76 201 244 22 0 chr13 12120504 12120549 -89752620 - L2 LINE L2 -6 3307 3262 630 246 22 28 chr13 12120550 12120729 -89752440 - MIR SINE MIR -72 190 13 338 289 128 47 chr13 12122495 12122644 -89750525 - MIR SINE MIR -38 224 64 326 291 128 7 chr13 12123748 12123896 -89749273 - MIR SINE MIR -77 185 20 315 304 233 23 chr13 12123875 12124184 -89748985 + L2 LINE L2 2897 3270 -2 * 429 252 43 9 chr13 12124712 12124827 -89748342 + MIR SINE MIR 32 150 -112 1617 213 80 29 chr13 12124842 12125218 -89747951 - MSTD LTR MaLR -1 395 1 388 311 79 18 chr13 12128316 12128544 -89744625 + MIR SINE MIR 21 262 0 1842 222 47 24 chr13 12128735 12129186 -89743983 - LTR40b LTR ERVL -1 461 1 186 191 0 0 chr13 12129538 12129580 -89743589 + (ATG)n Simple_repeat Simple_repeat 3 44 0 750 247 192 0 chr13 12130339 12130558 -89742611 - MIR SINE MIR 0 262 2 280 237 0 0 chr13 12130715 12130774 -89742395 + MIR SINE MIR 108 166 -96 748 202 8 0 chr13 12131084 12131208 -89741961 + FLAM_C SINE Alu 2 126 -17 34 42 0 0 chr13 12131208 12131256 -89741913 + AT_rich Low_complexity Low_complexity 1 48 0 289 342 58 0 chr13 12134041 12134161 -89739008 - L2 LINE L2 -11 3302 3176 628 224 200 71 chr13 12134251 12134701 -89738468 - MLT1J LTR MaLR -2 509 2 1212 153 62 8 chr13 12135205 12135447 -89737722 + L1MB2 LINE L1 5915 6169 -2 2103 121 0 57 chr13 12135555 12135886 -89737283 + AluSx SINE Alu 1 312 0 454 286 40 0 chr13 12136166 12136292 -89736877 + MIR SINE MIR 16 146 -62 758 148 58 58 chr13 12136346 12136535 -89736634 - MER53 DNA DNA 0 189 1 2428 85 0 7 chr13 12136760 12137065 -89736104 - AluSg SINE Alu -7 303 1 360 0 0 0 chr13 12137371 12137411 -89735758 + (CA)n Simple_repeat Simple_repeat 2 41 0 2136 120 0 20 chr13 12137677 12138004 -89735165 + AluSx SINE Alu 1 312 0 785 258 120 27 chr13 12138779 12139078 -89734091 - L2 LINE L2 0 3313 2987 216 0 0 0 chr13 12140129 12140153 -89733016 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr13 12142554 12142576 -89730593 + GC_rich Low_complexity Low_complexity 1 22 0 206 205 0 0 chr13 12143447 12143486 -89729683 + (CGG)n Simple_repeat Simple_repeat 3 41 0 29 60 0 0 chr13 12144428 12144478 -89728691 + AT_rich Low_complexity Low_complexity 1 50 0 252 59 0 0 chr13 12145422 12145456 -89727713 + (CA)n Simple_repeat Simple_repeat 2 35 0 955 204 14 27 chr13 12145573 12145794 -89727375 - L1MB8 LINE L1 -6 6172 5955 977 239 56 8 chr13 12145794 12146062 -89727107 - MLT2B3 LTR ERVL 0 554 274 430 284 109 25 chr13 12147485 12147724 -89725445 + MIR SINE MIR 4 262 0 211 305 49 12 chr13 12147725 12147807 -89725362 + L2 LINE L2 3222 3306 -7 1088 156 58 10 chr13 12148005 12148210 -89724959 - MER20 DNA MER1_type -4 215 1 198 0 0 0 chr13 12148681 12148703 -89724466 + (TC)n Simple_repeat Simple_repeat 1 22 0 2297 150 29 0 chr13 12149869 12150248 -89722921 + MLT1B LTR MaLR 1 390 0 442 298 15 15 chr13 12150316 12150447 -89722722 + MIR SINE MIR 20 150 -58 429 266 35 7 chr13 12150936 12151079 -89722090 + LTR67 LTR ERVL 411 557 0 2349 105 3 0 chr13 12151245 12151549 -89721620 - AluSq SINE Alu -8 305 1 846 127 206 0 chr13 12151617 12151782 -89721387 + MSTC LTR MaLR 4 202 -226 1913 97 32 0 chr13 12151789 12152037 -89721132 + AluSx SINE Alu 1 256 -56 421 188 12 0 chr13 12152037 12152122 -89721047 + MSTC LTR MaLR 343 428 0 410 263 111 26 chr13 12152443 12152633 -89720536 - MLT1K LTR MaLR -5 583 378 4158 198 43 19 chr13 12153095 12154082 -89719087 + Charlie1a DNA MER1_type 33 1042 -413 319 234 0 0 chr13 12154083 12154147 -89719022 + AluS SINE Alu 1 64 -239 795 181 27 34 chr13 12154147 12154296 -89718873 - FRAM SINE Alu -18 148 1 248 146 0 0 chr13 12154308 12154349 -89718820 - FRAM SINE Alu -7 4294967286 1 * 1470 140 29 86 chr13 12154349 12154680 -89718489 + Charlie1a DNA MER1_type 1027 1329 -1432 2392 98 7 0 chr13 12154680 12154985 -89718184 - AluSx SINE Alu -5 307 1 1470 140 29 86 chr13 12154985 12155090 -89718079 + Charlie1a DNA MER1_type 1329 1438 -17 778 243 22 11 chr13 12155144 12155329 -89717840 - MIR SINE MIR -59 203 17 2021 135 3 3 chr13 12155736 12156025 -89717144 - AluJo SINE Alu -13 299 11 190 250 201 14 chr13 12156926 12157070 -89716099 + L2 LINE L2 2910 3080 -192 215 298 88 35 chr13 12157174 12157288 -89715881 + L2 LINE L2 3125 3244 -28 2098 160 5 16 chr13 12158067 12158454 -89714715 + MLT1B LTR MaLR 1 383 -7 927 134 29 35 chr13 12158761 12158932 -89714237 + LTR8 LTR ERV1 415 584 -107 338 320 103 20 chr13 12159275 12159575 -89713594 - L2 LINE L2 -360 2954 2630 262 267 98 21 chr13 12160066 12160201 -89712968 - MIR SINE MIR -67 141 9 244 236 18 0 chr13 12160293 12160348 -89712821 + L2 LINE L2 3217 3272 0 1685 168 0 50 chr13 12160471 12160791 -89712378 + AluJo SINE Alu 1 305 0 419 228 124 48 chr13 12160845 12160990 -89712179 - L2 LINE L2 0 3313 3158 1400 153 18 36 chr13 12161059 12161333 -89711836 - Tigger7 DNA MER2_type 0 2487 2219 2221 133 0 0 chr13 12161435 12161737 -89711432 - AluSx SINE Alu -10 302 1 213 376 23 8 chr13 12161737 12161870 -89711299 - L2 LINE L2 -600 2714 2580 603 250 138 50 chr13 12161870 12162190 -89710979 - L2 LINE L2 -679 2635 2288 264 310 160 41 chr13 12162594 12163062 -89710107 - L2 LINE L2 -410 2904 2381 525 164 100 0 chr13 12163130 12163240 -89709929 - MER20 DNA MER1_type 0 219 99 548 293 39 31 chr13 12163330 12163559 -89709610 + MIR SINE MIR 18 248 -14 463 273 33 135 chr13 12164276 12164443 -89708726 - L2 LINE L2 0 3313 3195 1807 134 28 14 chr13 12164443 12164727 -89708442 + AluJo SINE Alu 2 289 -23 463 273 33 135 chr13 12164727 12164892 -89708277 - L2 LINE L2 -118 3195 3015 517 260 194 64 chr13 12165103 12165244 -89707925 + L2 LINE L2 2573 2694 -578 2192 124 0 23 chr13 12165244 12165551 -89707618 + AluSx SINE Alu 1 300 -12 517 260 194 64 chr13 12165551 12166041 -89707128 + L2 LINE L2 2694 3272 0 245 320 128 8 chr13 12166042 12166167 -89707002 - L2 LINE L2 -681 2633 2494 415 287 17 46 chr13 12166336 12166510 -89706659 - MIR3 SINE MIR -26 182 14 1266 145 19 9 chr13 12166523 12166737 -89706432 + AluJb SINE Alu 85 300 -12 238 279 39 78 chr13 12167469 12167598 -89705571 - L2 LINE L2 -1 3271 3148 1691 154 0 50 chr13 12167662 12168011 -89705158 - AluSx SINE Alu 0 335 2 542 201 272 0 chr13 12168211 12168380 -89704789 - MLT1K LTR MaLR 0 588 374 188 193 53 70 chr13 12168413 12168470 -89704699 - L2 LINE L2 -61 3252 3197 2101 122 3 0 chr13 12168766 12169070 -89704099 - AluSp SINE Alu -8 305 1 294 283 130 0 chr13 12169363 12169501 -89703668 + MIR SINE MIR 89 244 -18 208 0 62 0 chr13 12170151 12170183 -89702986 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr13 12177133 12177154 -89696015 + AT_rich Low_complexity Low_complexity 1 21 0 469 324 139 21 chr13 12177455 12177887 -89695282 + L2 LINE L2 2454 2936 -378 888 65 0 0 chr13 12178422 12178529 -89694640 + U6 snRNA snRNA 1 107 0 21 57 0 0 chr13 12179803 12179838 -89693331 + GC_rich Low_complexity Low_complexity 1 35 0 413 241 86 17 chr13 12180374 12180490 -89692679 - MIR3 SINE MIR 0 208 85 482 265 26 79 chr13 12180647 12180963 -89692206 - L1ME4a LINE L1 -94 6027 5733 2177 109 0 0 chr13 12180963 12181265 -89691904 - AluSx SINE Alu -10 302 1 482 265 26 79 chr13 12181265 12181326 -89691843 - L1ME4a LINE L1 -388 5733 5670 543 322 55 0 chr13 12181386 12181588 -89691581 + MIR SINE MIR 48 260 -2 3815 136 44 6 chr13 12181852 12182512 -89690657 + L1MB3 LINE L1 5497 6181 -2 717 253 31 39 chr13 12183345 12183574 -89689595 - MIR SINE MIR 0 262 36 235 281 50 58 chr13 12183687 12183808 -89689361 + L2 LINE L2 3169 3288 -25 490 211 60 38 chr13 12183897 12184030 -89689139 + MIR SINE MIR 2 137 -125 2042 116 28 54 chr13 12184042 12184173 -89688996 + MER2 DNA MER2_type 1 134 -210 2011 100 7 0 chr13 12184173 12184488 -89688681 - AluSq SINE Alu 0 317 1 2042 116 28 54 chr13 12184488 12184708 -89688461 + MER2 DNA MER2_type 134 344 0 1993 156 38 6 chr13 12184708 12185048 -89688121 + Tigger3(Golem) DNA MER2_type 2 352 -2677 764 147 7 0 chr13 12185055 12185191 -89687978 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 401 268 21 0 chr13 12185192 12185289 -89687880 + MIR SINE MIR 164 262 0 200 372 21 21 chr13 12185385 12185479 -89687690 + L2 LINE L2 2994 3087 -185 1495 203 25 6 chr13 12185548 12185863 -89687306 - L1MD1 LINE L1 0 6242 5922 2308 87 0 0 chr13 12185915 12186224 -89686945 - AluY SINE Alu -2 309 1 2367 186 31 10 chr13 12186318 12186839 -89686330 + Charlie1 DNA MER1_type 2143 2674 -87 3200 200 50 37 chr13 12186845 12187894 -89685275 - L1MD1 LINE L1 -424 5935 4901 2036 157 81 8 chr13 12187894 12188263 -89684906 + MSTD LTR MaLR 1 396 0 3200 200 50 37 chr13 12188263 12188422 -89684747 - L1MD1 LINE L1 -1458 4901 4709 1486 168 15 25 chr13 12188422 12188696 -89684473 - AluJo SINE Alu -41 271 1 3200 200 50 37 chr13 12188696 12188793 -89684376 - L1MD1 LINE L1 -1650 4709 4615 2202 58 0 4 chr13 12188862 12189139 -89684030 + AluY SINE Alu 1 276 -35 531 0 0 0 chr13 12189142 12189201 -89683968 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 294 326 51 20 chr13 12189258 12189356 -89683813 + L2 LINE L2 3210 3310 -3 292 322 22 11 chr13 12190451 12190631 -89682538 + L2 LINE L2 2038 2219 -1095 2213 246 63 17 chr13 12191084 12191894 -89681275 + L1MB7 LINE L1 2342 3188 -2958 3605 169 55 43 chr13 12191895 12192703 -89680466 + L1MB7 LINE L1 4858 5676 -508 1773 174 0 6 chr13 12192703 12192879 -89680290 - AluJo SINE Alu -3 309 134 2097 128 0 0 chr13 12192879 12193183 -89679986 - AluSx SINE Alu -8 304 1 1773 174 0 6 chr13 12193183 12193317 -89679852 - AluJo SINE Alu -178 134 1 3605 169 55 43 chr13 12193317 12193675 -89679494 + L1MB7 LINE L1 5676 6028 -156 755 207 30 0 chr13 12193744 12193913 -89679256 + L1ME1 LINE L1 3788 3961 -2185 * 1377 220 140 12 chr13 12193910 12194310 -89678859 + L1ME1 LINE L1 5711 6161 -5 2197 59 0 10 chr13 12194336 12194624 -89678545 + AluY SINE Alu 27 311 0 488 138 73 16 chr13 12194629 12194752 -89678417 + MER69 DNA AcHobo 2250 2379 -147 741 292 137 38 chr13 12194801 12195427 -89677742 + L2 LINE L2 2100 2787 -527 997 234 58 74 chr13 12195958 12196047 -89677122 - L1MDa LINE L1 -5230 1310 1221 1965 107 10 17 chr13 12196047 12196345 -89676824 + AluSx SINE Alu 1 296 -16 997 234 58 74 chr13 12196345 12196619 -89676550 - L1MDa LINE L1 -5319 1221 953 470 121 264 0 chr13 12197495 12197586 -89675583 + FLAM_A SINE Alu 9 123 -19 421 281 124 28 chr13 12197586 12197764 -89675405 + L1MC/D LINE L1 5563 5757 -2051 1787 182 0 3 chr13 12198322 12198635 -89674534 - AluJb SINE Alu 0 312 1 6448 117 18 1 chr13 12198854 12200290 -89672879 + L1PB2 LINE L1 4689 6146 -5 25 0 0 0 chr13 12200291 12200316 -89672853 + AT_rich Low_complexity Low_complexity 1 25 0 317 248 63 109 chr13 12200568 12200740 -89672429 + MER5A DNA MER1_type 11 186 -3 641 258 0 13 chr13 12201934 12202093 -89671076 - MIR SINE MIR -87 175 19 889 219 28 0 chr13 12202266 12202444 -89670725 - MER5A DNA MER1_type -6 183 1 192 325 25 12 chr13 12203719 12203799 -89669370 - L2 LINE L2 -5 3267 3187 1455 256 127 29 chr13 12203975 12204749 -89668420 - L1ME3A LINE L1 -1 6169 5281 697 195 140 6 chr13 12204864 12205028 -89668141 - MIR SINE MIR -46 216 31 3963 100 62 79 chr13 12205924 12206615 -89666554 - LTR1 LTR ERV1 -4 781 102 2213 106 0 0 chr13 12206615 12206918 -89666251 + AluSg SINE Alu 1 303 -7 3963 100 62 79 chr13 12206918 12206958 -89666211 - LTR1 LTR ERV1 -683 102 63 187 218 146 0 chr13 12208249 12208304 -89664865 + MIR SINE MIR 47 109 -153 713 174 0 0 chr13 12208363 12208484 -89664685 + FLAM_C SINE Alu 23 143 0 818 213 0 0 chr13 12208535 12208676 -89664493 + AluSg/x SINE Alu 154 294 -16 380 306 110 38 chr13 12208890 12209207 -89663962 - L2 LINE L2 -787 2527 2188 794 146 0 31 chr13 12209242 12209372 -89663797 + FLAM_C SINE Alu 2 127 -16 278 312 172 14 chr13 12209857 12210072 -89663097 - MLT1K LTR MaLR -158 430 182 256 213 88 25 chr13 12210129 12210209 -89662960 + LTR33 LTR ERVL 3 87 -434 409 141 0 0 chr13 12210217 12210288 -89662881 + Alu SINE Alu 240 310 -2 1350 142 32 20 chr13 12210288 12210565 -89662604 - L1MA4 LINE L1 -179 6121 5841 229 194 0 75 chr13 12210676 12210743 -89662426 - HAL1 LINE L1 -2141 366 305 297 0 0 0 chr13 12210862 12210895 -89662274 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 580 301 80 18 chr13 12211324 12211550 -89661619 - LTR33 LTR ERVL -183 338 99 1222 149 20 0 chr13 12211552 12211747 -89661422 - AluJb SINE Alu -113 199 1 882 96 144 12 chr13 12211747 12211914 -89661255 + L1MA4 LINE L1 6112 6300 0 598 233 222 11 chr13 12212199 12212379 -89660790 - MLT1G1 LTR MaLR 0 595 378 358 264 44 11 chr13 12212369 12212460 -89660709 - MLT1G1 LTR MaLR -296 234 141 * 680 113 8 89 chr13 12212460 12212584 -89660585 + AluJb SINE Alu 3 116 -196 254 135 39 0 chr13 12212585 12212637 -89660532 + GA-rich Low_complexity Low_complexity 3 56 0 2725 257 116 63 chr13 12212809 12213709 -89659460 + HAL1 LINE L1 68 1080 -1427 1460 189 0 43 chr13 12213709 12214032 -89659137 - AluJo SINE Alu -3 309 1 2725 257 116 63 chr13 12214032 12214633 -89658536 + HAL1 LINE L1 1080 1648 -859 754 245 119 52 chr13 12214796 12214900 -89658269 + HAL1 LINE L1 2142 2238 -269 824 288 11 30 chr13 12214900 12215060 -89658109 + MIR SINE MIR 1 157 -105 2056 120 0 0 chr13 12215060 12215384 -89657785 + AluSx SINE Alu 1 324 0 824 288 11 30 chr13 12215384 12215489 -89657680 + MIR SINE MIR 157 262 0 754 245 119 52 chr13 12215489 12215727 -89657442 + HAL1 LINE L1 2238 2507 0 1448 151 121 0 chr13 12216216 12216481 -89656688 - AluJo SINE Alu -14 298 2 351 283 107 96 chr13 12216542 12216620 -89656549 + L1MDa LINE L1 1059 1135 -5408 2288 93 7 0 chr13 12216620 12216909 -89656260 + AluSg SINE Alu 1 291 -19 351 283 107 96 chr13 12216909 12217160 -89656009 + L1MDa LINE L1 1135 1410 -5133 338 347 80 9 chr13 12217160 12217584 -89655585 + HAL1 LINE L1 1115 1568 -939 400 276 29 77 chr13 12217590 12217760 -89655409 - MIR SINE MIR -99 163 2 229 303 40 0 chr13 12217859 12217958 -89655211 + L1ME LINE L1 5769 5871 -299 768 176 0 0 chr13 12219936 12220061 -89653108 - FLAM_C SINE Alu -18 125 1 315 283 44 76 chr13 12220152 12220300 -89652869 - L1ME LINE L1 -505 5616 5465 2269 79 17 0 chr13 12220300 12220592 -89652577 + AluSp SINE Alu 1 297 -16 315 283 44 76 chr13 12220592 12220650 -89652519 - L1ME LINE L1 -656 5465 5407 213 39 0 0 chr13 12220650 12220676 -89652493 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1349 168 45 63 chr13 12220679 12220965 -89652204 - AluJo SINE Alu -31 281 1 315 283 44 76 chr13 12220965 12221131 -89652038 - L1ME LINE L1 -716 5405 5255 248 294 68 46 chr13 12221479 12221789 -89651380 - L1ME LINE L1 -1329 4817 4495 2167 117 24 3 chr13 12221789 12222087 -89651082 - AluJb SINE Alu -8 304 1 248 294 68 46 chr13 12222087 12222170 -89650999 - L1ME LINE L1 -1651 4495 4415 2850 13 0 0 chr13 12222172 12222483 -89650686 - AluY SINE Alu 0 311 1 408 310 155 24 chr13 12222560 12222850 -89650319 - L1ME LINE L1 -428 5693 5366 1716 253 73 41 chr13 12222959 12223648 -89649521 + MER20B DNA MER1_type 54 764 -19 309 234 35 50 chr13 12223651 12223731 -89649438 + L1 LINE L1 3770 3850 -2296 2429 96 0 13 chr13 12223731 12224045 -89649124 + AluSx SINE Alu 1 310 -2 309 234 35 50 chr13 12224045 12224194 -89648975 + L1 LINE L1 3850 3992 -2154 217 159 0 23 chr13 12224210 12224254 -89648915 + T-rich Low_complexity Low_complexity 1 43 0 2805 39 0 0 chr13 12224261 12224599 -89648570 - L1PA4 LINE L1 -3 6152 5815 1338 176 46 28 chr13 12224599 12224995 -89648174 + MER74A LTR ERVL 19 473 -85 26 0 0 0 chr13 12225016 12225042 -89648127 + AT_rich Low_complexity Low_complexity 1 26 0 897 213 66 10 chr13 12225072 12225269 -89647900 - AluJo SINE Alu -104 208 1 377 183 12 0 chr13 12225269 12225351 -89647818 + MER74A LTR ERVL 475 557 -1 552 313 23 10 chr13 12225377 12225681 -89647488 + L1MD2 LINE L1 4018 4325 -1821 3741 215 75 43 chr13 12225705 12225753 -89647416 + L1MCb LINE L1 1 46 -6240 207 0 0 0 chr13 12225753 12225776 -89647393 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3741 215 75 43 chr13 12225776 12226586 -89646583 + L1MCb LINE L1 46 1077 -5209 2212 95 0 3 chr13 12226586 12226911 -89646258 + AluSq SINE Alu 2 325 0 3741 215 75 43 chr13 12226911 12227286 -89645883 + L1MCb LINE L1 1077 1438 -4848 2223 228 112 126 chr13 12227290 12228702 -89644467 + L1MC4 LINE L1 5814 7056 -752 2121 182 9 16 chr13 12228702 12228869 -89644300 + L1MB3 LINE L1 5741 5908 -275 1637 141 45 67 chr13 12228869 12229181 -89643988 + AluJb SINE Alu 2 306 -6 2121 182 9 16 chr13 12229181 12229457 -89643712 + L1MB3 LINE L1 5908 6181 -2 2223 228 112 126 chr13 12229457 12230107 -89643062 + L1MC4 LINE L1 7056 7713 -95 227 274 0 0 chr13 12230113 12230164 -89643005 + L2 LINE L2 3221 3271 -1 456 298 75 40 chr13 12231110 12231539 -89641630 + MLT1K LTR MaLR 139 582 -6 679 257 23 34 chr13 12232001 12232266 -89640903 - MIR SINE MIR 0 262 1 343 276 0 0 chr13 12232540 12232616 -89640553 + MLT1J1 LTR MaLR 243 318 -128 493 297 55 16 chr13 12232821 12233003 -89640166 + HAL1 LINE L1 1115 1303 -1204 248 315 83 6 chr13 12233049 12233230 -89639939 + HAL1 LINE L1 1375 1569 -938 1797 171 0 17 chr13 12233859 12234146 -89639023 + AluJo SINE Alu 1 282 -30 2373 247 15 15 chr13 12234403 12235144 -89638025 + L1MD2 LINE L1 4462 5202 -944 746 200 0 0 chr13 12235144 12235264 -89637905 + FLAM_A SINE Alu 1 120 -13 1384 165 14 98 chr13 12235272 12235569 -89637600 + AluJo SINE Alu 24 295 -17 46 54 0 0 chr13 12235569 12235643 -89637526 + AT_rich Low_complexity Low_complexity 1 74 0 1811 123 89 17 chr13 12235643 12235992 -89637177 - THE1C LTR MaLR 0 375 2 318 26 0 0 chr13 12235994 12236033 -89637136 + (TG)n Simple_repeat Simple_repeat 2 40 0 3390 197 78 66 chr13 12236049 12236261 -89636908 + L1MD2 LINE L1 5188 5396 -963 1924 161 3 3 chr13 12236261 12236571 -89636598 + AluSx SINE Alu 1 310 -2 3390 197 78 66 chr13 12236571 12237169 -89636000 + L1MD2 LINE L1 5396 6019 -340 2509 141 24 29 chr13 12237169 12237393 -89635776 + L1PA16 LINE L1 5712 5935 -231 1994 147 0 7 chr13 12237393 12237693 -89635476 + AluJb SINE Alu 1 298 -14 2509 141 24 29 chr13 12237693 12237923 -89635246 + L1PA16 LINE L1 5935 6164 -2 3390 197 78 66 chr13 12237923 12238232 -89634937 + L1MD2 LINE L1 6019 6323 -36 21 36 0 0 chr13 12238318 12238346 -89634823 + AT_rich Low_complexity Low_complexity 1 28 0 1754 126 115 0 chr13 12238439 12238742 -89634427 + AluSx SINE Alu 1 312 0 401 318 70 79 chr13 12239038 12239592 -89633577 + LTR67 LTR ERVL 2 550 -7 9626 217 38 16 chr13 12239724 12243429 -89629740 - L1MB4 LINE L1 -100 6080 2293 1721 182 10 17 chr13 12243620 12243911 -89629258 - AluJo SINE Alu -23 289 1 1053 133 22 22 chr13 12244476 12244657 -89628512 + AluSc SINE Alu 126 306 -3 1181 177 55 20 chr13 12244855 12245109 -89628060 - L1MD2 LINE L1 -199 6160 5898 1323 212 29 27 chr13 12245110 12245129 -89628040 - L1MDb LINE L1 -3518 2888 2871 2244 99 7 7 chr13 12245129 12245431 -89627738 - AluSq SINE Alu -11 302 1 1323 212 29 27 chr13 12245431 12245947 -89627222 - L1MDb LINE L1 -3535 2871 2355 727 212 13 7 chr13 12245947 12246098 -89627071 - AluJo SINE Alu -39 273 122 496 219 39 19 chr13 12246099 12246304 -89626865 - L1MDb LINE L1 -4043 2363 2155 1044 203 14 14 chr13 12246304 12246521 -89626648 - AluJo SINE Alu -5 307 91 2066 185 68 6 chr13 12246538 12247040 -89626129 + L1MDa LINE L1 1583 2115 -4425 893 130 23 0 chr13 12247059 12247190 -89625979 - FRAM SINE Alu -19 157 24 3192 214 81 46 chr13 12247192 12247345 -89625824 - L1MDb LINE L1 -4246 2160 2014 1876 175 3 0 chr13 12247345 12247648 -89625521 + AluJo SINE Alu 4 307 -5 3192 214 81 46 chr13 12247648 12249501 -89623668 - L1MDb LINE L1 -4392 2014 25 500 331 6 0 chr13 12249511 12249674 -89623495 - LTR33 LTR ERVL -357 164 1 2220 90 0 33 chr13 12249757 12250058 -89623111 - AluSg1 SINE Alu -18 291 1 2173 123 0 16 chr13 12250379 12250695 -89622474 + AluSx SINE Alu 1 311 -1 207 290 0 0 chr13 12250799 12250861 -89622308 + A-rich Low_complexity Low_complexity 1 62 0 191 258 76 45 chr13 12251295 12251361 -89621808 + L2 LINE L2 3173 3240 -32 788 71 35 14 chr13 12251371 12251512 -89621657 + (GAAA)n Simple_repeat Simple_repeat 3 146 0 225 132 105 0 chr13 12251529 12251567 -89621602 - L2 LINE L2 -10 3262 3221 208 143 0 0 chr13 12251595 12251630 -89621539 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 184 378 0 40 chr13 12252113 12252187 -89620982 - MIR SINE MIR -122 86 16 2145 79 68 0 chr13 12252520 12252798 -89620371 - AluSp SINE Alu -16 297 1 478 132 0 13 chr13 12253521 12253597 -89619572 - FLAM_A SINE Alu -25 117 43 3431 73 30 0 chr13 12253814 12253858 -89619311 - MLT2A2 LTR ERVL 0 453 412 505 0 31 0 chr13 12253858 12253923 -89619246 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 3431 73 30 0 chr13 12253923 12254318 -89618851 - MLT2A2 LTR ERVL -41 412 1 466 343 29 17 chr13 12254588 12254827 -89618342 + MIR SINE MIR 20 261 -1 988 143 53 11 chr13 12255505 12255694 -89617475 + L1MB2 LINE L1 5971 6167 -4 206 317 163 57 chr13 12255888 12256011 -89617158 + L2 LINE L2 3136 3271 -1 509 198 32 226 chr13 12256023 12256102 -89617067 - MIR SINE MIR -33 229 136 1476 199 10 27 chr13 12256102 12256261 -89616908 - AluJo SINE Alu -20 292 139 2413 49 7 20 chr13 12256261 12256566 -89616603 - AluY SINE Alu -10 301 1 1476 199 10 27 chr13 12256566 12256703 -89616466 - AluJo SINE Alu -173 139 1 509 198 32 226 chr13 12256703 12256906 -89616263 - MIR SINE MIR -126 136 2 631 77 62 26 chr13 12257125 12257441 -89615728 + (TG)n Simple_repeat Simple_repeat 1 327 0 373 258 67 33 chr13 12257441 12257561 -89615608 + L2 LINE L2 3165 3288 -25 225 235 0 20 chr13 12258124 12258175 -89614994 - MER2 DNA MER2_type 0 345 296 293 229 0 0 chr13 12258179 12258240 -89614929 + MER2 DNA MER2_type 282 342 -3 3904 98 7 0 chr13 12259559 12260109 -89613060 - MER41A LTR ERV1 0 554 1 2423 96 0 0 chr13 12260629 12260931 -89612238 - AluSx SINE Alu -10 302 1 25 0 0 0 chr13 12261266 12261291 -89611878 + AT_rich Low_complexity Low_complexity 1 25 0 1743 164 0 34 chr13 12261884 12262177 -89610992 + AluJo SINE Alu 2 284 -28 199 308 56 19 chr13 12262279 12262386 -89610783 - MIR SINE MIR -6 256 146 2135 138 0 6 chr13 12262505 12262817 -89610352 + AluSg SINE Alu 1 310 0 235 277 46 46 chr13 12262818 12262948 -89610221 + MER5B DNA MER1_type 29 158 -20 * 327 284 43 50 chr13 12262837 12262978 -89610191 - MER5A DNA MER1_type -48 141 2 215 206 176 0 chr13 12264049 12264117 -89609052 - MIR SINE MIR -12 250 171 2305 104 3 0 chr13 12264202 12264509 -89608660 + AluSx SINE Alu 1 308 -4 2013 131 28 0 chr13 12264509 12264800 -89608369 + AluSx SINE Alu 3 301 -11 571 258 30 0 chr13 12264800 12264932 -89608237 + MIR SINE MIR 38 173 -89 322 301 37 15 chr13 12265006 12265142 -89608027 - MIR SINE MIR -92 170 32 24 0 0 0 chr13 12266107 12266131 -89607038 + AT_rich Low_complexity Low_complexity 1 24 0 2315 61 0 14 chr13 12266131 12266427 -89606742 - AluY SINE Alu -19 292 1 195 42 0 0 chr13 12267266 12267290 -89605879 + (TAA)n Simple_repeat Simple_repeat 1 24 0 847 168 0 0 chr13 12267648 12267773 -89605396 - FLAM_C SINE Alu -18 125 1 372 209 276 8 chr13 12267995 12268129 -89605040 + MLT1H LTR MaLR 376 545 -4 266 234 0 0 chr13 12268281 12268345 -89604824 - LTR33A LTR ERVL -2 521 458 967 205 0 0 chr13 12268651 12268822 -89604347 + FRAM SINE Alu 1 170 -6 297 270 72 40 chr13 12269951 12270103 -89603066 + L1ME4a LINE L1 5964 6120 -1 2465 69 0 3 chr13 12270109 12270414 -89602755 + AluY SINE Alu 1 304 -7 22 35 0 0 chr13 12270468 12270497 -89602672 + AT_rich Low_complexity Low_complexity 1 29 0 188 284 112 95 chr13 12270908 12271256 -89601913 - L2 LINE L2 -5 3267 2914 291 197 33 0 chr13 12271283 12271344 -89601825 - MLT1E2 LTR MaLR 0 626 564 2257 112 0 10 chr13 12271465 12271768 -89601401 + AluSq SINE Alu 1 300 -13 711 154 119 68 chr13 12272152 12272342 -89600827 + MLT1D LTR MaLR 308 533 -9 402 364 12 8 chr13 12272486 12272728 -89600441 + MLT1D-int LTR MaLR 290 532 -839 730 211 17 42 chr13 12273276 12273540 -89599629 - AluSg1 SINE Alu 0 307 50 2163 126 0 0 chr13 12273699 12274001 -89599168 - AluSx SINE Alu -10 302 1 440 307 62 0 chr13 12274122 12274314 -89598855 + MIR SINE MIR 48 251 -11 3858 135 44 6 chr13 12274587 12275247 -89597922 + L1MB3 LINE L1 5497 6181 -2 612 253 31 39 chr13 12276080 12276309 -89596860 - MIR SINE MIR 0 262 36 190 281 50 58 chr13 12276422 12276543 -89596626 + L2 LINE L2 3169 3288 -25 433 216 69 9 chr13 12276632 12276748 -89596421 + MIR SINE MIR 2 124 -138 2070 113 28 54 chr13 12276777 12276908 -89596261 + MER2 DNA MER2_type 1 134 -210 2132 100 7 0 chr13 12276908 12277223 -89595946 - AluSq SINE Alu 0 317 1 2070 113 28 54 chr13 12277223 12277443 -89595726 + MER2 DNA MER2_type 134 344 0 2009 156 38 6 chr13 12277443 12277783 -89595386 + Tigger3(Golem) DNA MER2_type 2 352 -2677 800 143 7 0 chr13 12277790 12277930 -89595239 + (TAGA)n Simple_repeat Simple_repeat 2 142 0 355 268 21 0 chr13 12277931 12278028 -89595141 + MIR SINE MIR 164 262 0 1489 206 25 6 chr13 12278287 12278602 -89594567 - L1MD1 LINE L1 0 6242 5922 2415 94 0 0 chr13 12278654 12278962 -89594207 - AluSx SINE Alu -4 308 1 1050 272 93 28 chr13 12279444 12279972 -89593197 + MLT1G LTR MaLR 3 555 0 1175 209 99 4 chr13 12279976 12280249 -89592920 - MLT1D LTR MaLR 0 505 207 300 102 0 0 chr13 12280254 12280303 -89592866 + (TG)n Simple_repeat Simple_repeat 1 49 0 374 228 12 84 chr13 12280332 12280372 -89592797 - MLT1D LTR MaLR -269 236 195 252 0 0 0 chr13 12280372 12280400 -89592769 + (TA)n Simple_repeat Simple_repeat 1 28 0 2069 126 3 0 chr13 12280401 12280687 -89592482 - AluSq SINE Alu -12 301 15 374 228 12 84 chr13 12280687 12280776 -89592393 - MLT1D LTR MaLR -310 195 117 1832 179 0 0 chr13 12280776 12281072 -89592097 - AluJb SINE Alu -16 296 1 374 228 12 84 chr13 12281072 12281106 -89592063 - MLT1D LTR MaLR -388 117 82 186 143 0 0 chr13 12281116 12281151 -89592018 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 356 238 25 12 chr13 12281153 12281233 -89591936 - MLT1D LTR MaLR -422 83 3 448 255 39 13 chr13 12281256 12281409 -89591760 - L1ME4a LINE L1 -209 5912 5756 767 178 0 20 chr13 12281414 12281560 -89591609 - L1PA16 LINE L1 0 6166 6024 186 43 0 0 chr13 12282699 12282722 -89590447 + (CTG)n Simple_repeat Simple_repeat 3 25 0 2025 110 11 4 chr13 12283529 12283810 -89589359 + AluSq SINE Alu 1 283 -30 1695 168 30 17 chr13 12283841 12284139 -89589030 + AluJo SINE Alu 1 302 -10 21 36 0 0 chr13 12288012 12288040 -89585129 + GC_rich Low_complexity Low_complexity 1 28 0 3325 180 96 48 chr13 12288656 12290111 -89583058 - MER52A LTR ERV1 -1 1754 1 624 269 35 15 chr13 12290264 12290465 -89582704 - MIR SINE MIR -46 216 12 1177 181 0 5 chr13 12290605 12290798 -89582371 + AluJo SINE Alu 1 192 -120 2260 105 3 0 chr13 12290953 12291249 -89581920 + AluSx SINE Alu 1 297 -15 476 326 57 5 chr13 12291561 12291861 -89581308 - L1ME4a LINE L1 -482 5639 5318 760 186 0 0 chr13 12291883 12292007 -89581162 + FLAM_C SINE Alu 2 125 -18 333 0 0 0 chr13 12292212 12292249 -89580920 + (TG)n Simple_repeat Simple_repeat 2 38 0 1984 128 26 26 chr13 12292636 12292948 -89580221 - AluSx SINE Alu 0 312 1 7719 78 6 2 chr13 12293279 12295038 -89578131 + L1PA7 LINE L1 4309 6073 -81 307 122 9 0 chr13 12295036 12295089 -89578080 + L1P3 LINE L1 5807 5861 -294 * 410 212 38 53 chr13 12295146 12295278 -89577891 + MLT2F LTR ERVL 534 663 0 1010 158 33 95 chr13 12295777 12296018 -89577151 + MLT2B1 LTR ERVL 295 520 0 3210 245 29 7 chr13 12296022 12296750 -89576419 + L1MC/D LINE L1 3306 4057 -2089 1150 208 128 29 chr13 12296750 12297062 -89576107 - MER2 DNA MER2_type 0 344 2 3210 245 29 7 chr13 12297062 12297186 -89575983 + L1MC/D LINE L1 4057 4177 -1969 2185 75 43 0 chr13 12297225 12297504 -89575665 + AluSx SINE Alu 21 311 -1 650 195 0 65 chr13 12297636 12297761 -89575408 + L1MC/D LINE L1 4989 5100 -1046 2322 93 3 0 chr13 12297761 12298062 -89575107 + AluY SINE Alu 1 302 -9 650 195 0 65 chr13 12298062 12298121 -89575048 + L1MC/D LINE L1 5100 5161 -985 5439 222 24 7 chr13 12298127 12298647 -89574522 + L1 LINE L1 2410 2920 -3226 2427 167 47 0 chr13 12298647 12299054 -89574115 + MSTB LTR MaLR 1 426 0 5439 222 24 7 chr13 12299054 12299890 -89573279 + L1 LINE L1 2920 3788 -2358 180 143 0 0 chr13 12300434 12300476 -89572693 + (ATG)n Simple_repeat Simple_repeat 3 44 0 5999 153 30 83 chr13 12301122 12301775 -89571394 + L1PA16 LINE L1 3775 4462 -1704 591 103 0 0 chr13 12301775 12301862 -89571307 - Alu SINE Alu 0 311 225 5999 153 30 83 chr13 12301862 12303672 -89569497 + L1PA16 LINE L1 4462 6162 -4 1976 138 27 6 chr13 12303654 12304071 -89569098 + L1MC/D LINE L1 5149 5568 -743 * 1269 269 40 73 chr13 12304071 12304551 -89568618 - ERVL LTR ERVL -621 5143 4680 198 0 0 0 chr13 12304589 12304611 -89568558 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 256 343 149 0 chr13 12304781 12304956 -89568213 + L2 LINE L2 2435 2635 -679 2734 188 81 29 chr13 12304956 12305176 -89567993 - L1MDa LINE L1 -4071 2469 2262 2028 137 3 3 chr13 12305176 12305468 -89567701 - AluSx SINE Alu -20 292 1 2734 188 81 29 chr13 12305468 12306566 -89566603 - L1MDa LINE L1 -4278 2262 1222 2139 112 0 10 chr13 12306566 12306862 -89566307 + AluSx SINE Alu 1 293 -19 2734 188 81 29 chr13 12306862 12307408 -89565761 - L1MDa LINE L1 -5318 1222 26 493 302 64 17 chr13 12307547 12307954 -89565215 - L1M4 LINE L1 -1095 5051 4626 542 179 0 45 chr13 12307974 12308086 -89565083 + L1ME1 LINE L1 6054 6160 -6 1921 303 71 16 chr13 12308111 12308856 -89564313 + ERVL LTR ERVL 1858 2643 -3121 2720 234 18 41 chr13 12309252 12310012 -89563157 - L1ME1 LINE L1 -7 6228 5486 5761 218 69 56 chr13 12310020 12310621 -89562548 - L1M4 LINE L1 -4985 1870 1278 218 32 32 0 chr13 12310621 12310652 -89562517 + (CCA)n Simple_repeat Simple_repeat 1 32 0 5761 218 69 56 chr13 12310652 12311850 -89561319 - L1M4 LINE L1 -5577 1278 79 1204 194 102 35 chr13 12311850 12312133 -89561036 + AluJb SINE Alu 1 302 0 5761 218 69 56 chr13 12312133 12312203 -89560966 - L1M4 LINE L1 -6776 79 11 2384 216 65 71 chr13 12312209 12312617 -89560552 - L1ME1 LINE L1 -1258 4957 4548 1923 156 0 7 chr13 12312617 12312906 -89560263 - AluJb SINE Alu -25 287 1 2384 216 65 71 chr13 12312906 12313360 -89559809 - L1ME1 LINE L1 -1667 4548 4100 4069 263 57 33 chr13 12313686 12315247 -89557922 - L1ME1 LINE L1 -4761 1635 37 286 257 95 0 chr13 12315970 12316044 -89557125 + ERVL LTR ERVL 2964 3044 -2720 289 267 95 19 chr13 12316055 12316160 -89557009 - MER94 DNA DNA -21 113 1 1141 324 44 15 chr13 12316169 12316650 -89556519 + ERVL LTR ERVL 3046 3540 -2224 3358 277 109 18 chr13 12316775 12318021 -89555148 + ERVL LTR ERVL 3728 5087 -677 262 281 16 0 chr13 12318128 12318192 -89554977 - HERV16 LTR ERVL -3881 1115 1051 557 291 181 0 chr13 12318196 12318423 -89554746 - HERV16 LTR ERVL -4708 288 21 643 298 118 28 chr13 12318437 12318837 -89554332 - LTR16A LTR ERVL -4 446 11 1468 206 31 17 chr13 12318863 12319032 -89554137 - L1ME LINE L1 -416 5748 5583 2399 106 0 0 chr13 12319032 12319344 -89553825 + AluSx SINE Alu 1 312 0 1468 206 31 17 chr13 12319344 12319534 -89553635 - L1ME LINE L1 -581 5583 5384 5803 140 34 17 chr13 12319538 12319594 -89553575 - Tigger3b DNA MER2_type -1797 1231 1177 2131 82 68 0 chr13 12319594 12319873 -89553296 - AluSp SINE Alu -15 298 1 5803 140 34 17 chr13 12319873 12320892 -89552277 - Tigger3b DNA MER2_type -1851 1177 137 2143 115 0 11 chr13 12321088 12321406 -89551763 + AluSx SINE Alu 1 315 0 31 26 0 0 chr13 12321534 12321572 -89551597 + AT_rich Low_complexity Low_complexity 1 38 0 522 141 12 0 chr13 12321593 12321678 -89551491 + MSTB1 LTR MaLR 1 86 -346 232 234 31 0 chr13 12321749 12321813 -89551356 - L1ME LINE L1 -195 5926 5861 2651 123 33 12 chr13 12321830 12322253 -89550916 - MSTB1 LTR MaLR 0 432 1 25 75 0 0 chr13 12322254 12322307 -89550862 + AT_rich Low_complexity Low_complexity 1 53 0 255 257 9 44 chr13 12322871 12322984 -89550185 - MLT1K LTR MaLR -356 232 124 469 270 57 6 chr13 12323349 12323508 -89549661 - ERVL LTR ERVL -374 5390 5224 372 333 119 11 chr13 12323529 12323706 -89549463 + MER91A DNA MER1_type 1 196 0 2500 111 16 3 chr13 12323951 12324288 -89548881 - L1PB1 LINE L1 -26 6125 5781 351 0 0 0 chr13 12324288 12324327 -89548842 + (TG)n Simple_repeat Simple_repeat 2 40 0 2500 111 16 3 chr13 12324327 12324376 -89548793 - L1PB1 LINE L1 -370 5781 5734 494 285 69 34 chr13 12324376 12324667 -89548502 - ERVL LTR ERVL -785 4979 4679 1895 156 12 92 chr13 12324853 12325094 -89548075 - MLT1B LTR MaLR 0 390 196 2157 92 65 0 chr13 12325094 12325386 -89547783 - AluSp SINE Alu -2 311 1 1895 156 12 92 chr13 12325386 12325568 -89547601 - MLT1B LTR MaLR -194 196 1 180 77 0 0 chr13 12325740 12325766 -89547403 + (CAAAAA)n Simple_repeat Simple_repeat 6 31 0 245 218 73 18 chr13 12325803 12325913 -89547256 - L1ME LINE L1 -730 5432 5317 578 270 72 31 chr13 12327526 12327748 -89545421 + MIR SINE MIR 3 233 -29 2169 96 21 3 chr13 12328045 12328336 -89544833 + AluSx SINE Alu 1 296 -16 328 306 52 52 chr13 12328888 12329022 -89544147 - MIR3 SINE MIR -54 154 21 1965 122 0 7 chr13 12329448 12329744 -89543425 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr13 12330573 12330597 -89542572 + AT_rich Low_complexity Low_complexity 1 24 0 674 239 86 29 chr13 12334208 12334417 -89538752 + MIR SINE MIR 36 256 -6 * 806 268 20 10 chr13 12334416 12334614 -89538555 + MIR SINE MIR 53 252 -10 847 249 82 25 chr13 12334619 12334936 -89538233 + MER46C DNA MER2_type 1 335 -3 273 250 34 45 chr13 12335327 12335415 -89537754 + MIR3 SINE MIR 110 196 -12 306 164 0 0 chr13 12337235 12337290 -89535879 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 208 311 120 44 chr13 12337801 12338026 -89535143 + L2 LINE L2 3030 3271 -1 767 206 47 6 chr13 12338957 12339127 -89534042 + MER5B DNA MER1_type 2 178 0 2084 120 16 3 chr13 12339642 12339950 -89533219 - AluSx SINE Alu 0 312 1 451 260 66 15 chr13 12340280 12340476 -89532693 - L1ME LINE L1 -302 5819 5614 317 291 45 27 chr13 12340674 12340784 -89532385 + L2 LINE L2 3185 3296 -17 189 121 0 0 chr13 12340826 12340859 -89532310 + (CA)n Simple_repeat Simple_repeat 2 34 0 246 265 22 88 chr13 12340866 12341183 -89531986 - L1ME LINE L1 -841 5305 5010 387 246 156 45 chr13 12341511 12341710 -89531459 + L1MC4 LINE L1 7314 7534 -508 349 278 41 18 chr13 12341774 12341943 -89531226 + L1MC4 LINE L1 7742 7914 -128 1936 216 97 94 chr13 12342179 12343630 -89529539 + Charlie1a DNA MER1_type 1 1455 0 822 256 78 88 chr13 12343814 12343998 -89529171 + MLT1J LTR MaLR 4 188 -323 1984 80 73 14 chr13 12343998 12344284 -89528885 + AluSg1 SINE Alu 1 303 -6 822 256 78 88 chr13 12344284 12344315 -89528854 + MLT1J LTR MaLR 188 218 -293 2202 108 14 0 chr13 12344315 12344611 -89528558 - AluSx SINE Alu -12 300 1 822 256 78 88 chr13 12344611 12344781 -89528388 + MLT1J LTR MaLR 218 386 -125 256 291 0 0 chr13 12345252 12345307 -89527862 - L2 LINE L2 -8 3264 3210 610 148 68 43 chr13 12345418 12345580 -89527589 - Charlie1 DNA MER1_type -1 2760 2595 1955 209 127 52 chr13 12345661 12346578 -89526591 - L1MC5 LINE L1 -205 7756 6772 667 247 157 1 chr13 12346708 12346798 -89526371 + MER77 LTR ERV1 154 229 -333 246 32 0 0 chr13 12346798 12346829 -89526340 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 667 247 157 1 chr13 12346829 12346955 -89526214 + MER77 LTR ERV1 229 367 -195 * 774 268 110 20 chr13 12346950 12347249 -89525920 + MER77 LTR ERV1 274 599 -6 516 256 6 26 chr13 12347331 12347487 -89525682 - L1MC5 LINE L1 -1184 6777 6625 489 329 160 30 chr13 12347535 12348009 -89525160 - L1MC4a LINE L1 -1226 6582 6047 870 183 0 0 chr13 12348120 12348257 -89524912 - FLAM_C SINE Alu -6 137 1 295 365 47 18 chr13 12348552 12348722 -89524447 + L2 LINE L2 2101 2275 -1039 769 279 95 29 chr13 12349226 12349677 -89523492 + L1ME4a LINE L1 5495 5994 -127 879 153 0 0 chr13 12349677 12349808 -89523361 + FLAM_C SINE Alu 1 131 -2 769 279 95 29 chr13 12349808 12349934 -89523235 + L1ME4a LINE L1 5994 6110 -11 239 294 65 22 chr13 12349964 12350056 -89523113 - L2 LINE L2 -8 3264 3169 383 204 116 35 chr13 12350301 12350473 -89522696 - HAL1 LINE L1 -1 2506 2321 293 233 27 0 chr13 12351686 12351759 -89521410 - MIR SINE MIR -110 152 78 223 217 0 0 chr13 12354374 12354420 -89518749 + MIR SINE MIR 146 191 -71 419 184 72 7 chr13 12355516 12355668 -89517501 - Zaphod DNA AcHobo -41 3990 3829 396 167 11 0 chr13 12355732 12355822 -89517347 - Zaphod DNA AcHobo -323 3708 3618 235 184 0 0 chr13 12356088 12356126 -89517043 - MER2 DNA MER2_type -25 320 283 254 157 0 0 chr13 12356178 12356229 -89516940 - MER2 DNA MER2_type -135 210 160 757 122 151 0 chr13 12356277 12356416 -89516753 - MER2 DNA MER2_type -179 166 7 1372 245 82 3 chr13 12356490 12356958 -89516211 - Zaphod DNA AcHobo -3376 655 102 533 223 120 54 chr13 12357087 12357271 -89515898 - MIR SINE MIR -60 202 7 832 163 0 0 chr13 12359275 12359398 -89513771 + FLAM_A SINE Alu 6 128 -14 250 329 26 0 chr13 12360820 12360896 -89512273 - MIR3 SINE MIR -39 169 92 384 77 0 0 chr13 12361451 12361503 -89511666 + (TA)n Simple_repeat Simple_repeat 1 52 0 28 48 0 0 chr13 12361543 12361585 -89511584 + AT_rich Low_complexity Low_complexity 1 42 0 296 279 132 37 chr13 12361629 12361819 -89511350 - MIR SINE MIR -27 235 28 1953 141 10 0 chr13 12362227 12362524 -89510645 + AluJo SINE Alu 1 300 -12 414 297 138 0 chr13 12362524 12362669 -89510500 + MIR SINE MIR 24 188 -74 745 174 65 131 chr13 12364303 12364578 -89508591 - L2 LINE L2 0 3313 3057 660 214 61 72 chr13 12365408 12365670 -89507499 - L2 LINE L2 0 3313 3055 936 235 73 17 chr13 12365673 12366127 -89507042 + MLT1F1 LTR MaLR 4 566 -1 362 303 155 0 chr13 12366130 12366285 -89506884 - L2 LINE L2 -258 3055 2877 805 272 112 0 chr13 12366452 12366684 -89506485 - MIR SINE MIR -3 259 2 2019 74 0 4 chr13 12367016 12367299 -89505870 + AluSg SINE Alu 28 309 0 730 252 61 8 chr13 12367745 12367991 -89505178 - MIR SINE MIR -2 260 2 1881 139 20 33 chr13 12368076 12368379 -89504790 + AluJb SINE Alu 1 299 -13 342 222 105 59 chr13 12368757 12368910 -89504259 + L2 LINE L2 3132 3291 -22 207 0 0 0 chr13 12369449 12369472 -89503697 + (A)n Simple_repeat Simple_repeat 1 23 0 316 316 217 25 chr13 12371376 12371948 -89501221 + L2 LINE L2 2013 2694 -620 278 328 106 93 chr13 12372034 12372305 -89500864 + L2 LINE L2 2855 3134 -138 1709 153 58 4 chr13 12372305 12372579 -89500590 - AluJb SINE Alu -23 289 1 278 328 106 93 chr13 12372579 12372703 -89500466 + L2 LINE L2 3134 3255 -17 185 339 51 0 chr13 12372813 12372872 -89500297 - L2 LINE L2 -3 3310 3249 309 164 45 0 chr13 12373709 12373776 -89499393 - MLT1K LTR MaLR -10 578 509 216 0 0 0 chr13 12376679 12376703 -89496466 + (CGG)n Simple_repeat Simple_repeat 3 26 0 197 319 66 22 chr13 12378571 12378662 -89494507 - L2 LINE L2 -504 2810 2716 272 250 342 22 chr13 12378759 12378943 -89494226 + MIR SINE MIR 13 255 -7 334 311 192 11 chr13 12379109 12379286 -89493883 + MIR SINE MIR 51 259 -3 2189 98 3 3 chr13 12380154 12380440 -89492729 + AluSg SINE Alu 1 286 -24 229 302 16 0 chr13 12380540 12380603 -89492566 + L2 LINE L2 3195 3258 -55 2364 115 25 99 chr13 12380623 12381259 -89491910 + MER4E LTR ERV1 5 766 0 4325 158 64 21 chr13 12381454 12382278 -89490891 + MER21B LTR ERV1 1 860 -3 3525 153 67 30 chr13 12382517 12383216 -89489953 - LTR8A LTR ERV1 -2 725 1 2151 121 13 0 chr13 12383402 12383707 -89489462 - AluSx SINE Alu -3 309 1 451 195 7 71 chr13 12384276 12384324 -89488845 + Charlie5 DNA MER1_type 2442 2492 -93 1458 172 100 4 chr13 12384324 12384585 -89488584 + AluJb SINE Alu 1 286 -26 451 195 7 71 chr13 12384585 12384690 -89488479 + Charlie5 DNA MER1_type 2492 2585 0 282 359 76 31 chr13 12385126 12385349 -89487820 + L2 LINE L2 1515 1747 -1567 362 215 107 27 chr13 12385379 12385528 -89487641 - Charlie5 DNA MER1_type -104 2508 2348 281 211 66 0 chr13 12385522 12385598 -89487571 - Charlie5 DNA MER1_type -2412 200 120 * 4403 149 77 13 chr13 12385612 12386732 -89486437 - L1MB2 LINE L1 -28 6143 4954 2193 111 0 16 chr13 12387741 12388048 -89485121 + AluSx SINE Alu 1 302 -10 1787 148 46 0 chr13 12388104 12388367 -89484802 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr13 12388379 12388399 -89484770 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 30 45 0 0 chr13 12388466 12388510 -89484659 + AT_rich Low_complexity Low_complexity 1 44 0 299 303 90 0 chr13 12388773 12388862 -89484307 - L2 LINE L2 -9 3304 3208 575 310 11 16 chr13 12389072 12389256 -89483913 - L2 LINE L2 -18 3295 3113 575 310 11 16 chr13 12390044 12390228 -89482941 - L2 LINE L2 -18 3295 3113 212 179 0 0 chr13 12391752 12391791 -89481378 + T-rich Low_complexity Low_complexity 1 39 0 202 322 100 11 chr13 12392675 12392765 -89480404 - MIR3 SINE MIR -26 182 85 28 48 0 0 chr13 12393299 12393341 -89479828 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr13 12393473 12393508 -89479661 + AT_rich Low_complexity Low_complexity 1 35 0 2232 61 29 0 chr13 12393919 12394197 -89478972 - AluY SINE Alu -25 286 1 23 0 0 0 chr13 12395170 12395193 -89477976 + AT_rich Low_complexity Low_complexity 1 23 0 2076 221 99 20 chr13 12395255 12395928 -89477241 + L1ME2 LINE L1 5412 6134 -30 488 183 183 0 chr13 12395929 12396033 -89477136 + FLAM_A SINE Alu 5 127 -6 918 191 0 25 chr13 12396314 12396476 -89476693 + FRAM SINE Alu 1 158 -8 636 292 74 19 chr13 12396883 12397099 -89476070 + MIR SINE MIR 22 249 -13 535 279 155 35 chr13 12397231 12397521 -89475648 + MLT1K LTR MaLR 92 416 -172 259 236 0 2 chr13 12397549 12397608 -89475561 + MLT1L LTR MaLR 522 606 -9 481 190 34 87 chr13 12397802 12397964 -89475205 + MER33 DNA MER1_type 1 146 -89 301 273 10 40 chr13 12398004 12398103 -89475066 + L2 LINE L2 3177 3272 0 284 159 0 16 chr13 12399319 12399382 -89473787 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 730 238 113 25 chr13 12399430 12399670 -89473499 + MIR SINE MIR 1 261 -1 194 382 0 0 chr13 12400032 12400100 -89473069 - MIR3 SINE MIR -24 184 117 1751 155 78 0 chr13 12401998 12402333 -89470836 - Tigger2 DNA MER2_type -2357 361 1 189 0 0 0 chr13 12402983 12403004 -89470165 + (CA)n Simple_repeat Simple_repeat 2 22 0 1348 89 0 0 chr13 12403006 12403175 -89469994 + AluSq SINE Alu 136 304 -9 232 312 121 7 chr13 12403187 12403328 -89469841 - L2 LINE L2 -1307 2007 1851 3172 266 120 23 chr13 12403707 12405132 -89468037 + L2 LINE L2 1759 3312 -1 181 289 104 44 chr13 12405115 12405250 -89467919 - L2 LINE L2 -881 2433 2291 * 245 138 0 69 chr13 12405710 12405768 -89467401 - L1MC4 LINE L1 -1340 6702 6649 1672 135 74 34 chr13 12406208 12406505 -89466664 + AluSx SINE Alu 1 309 -3 1722 57 0 5 chr13 12406574 12406783 -89466386 + AluY SINE Alu 87 294 -17 463 229 179 0 chr13 12407694 12407834 -89465335 + Charlie1b DNA MER1_type 50 214 -309 3337 146 82 16 chr13 12408009 12408647 -89464522 - L1MD1 LINE L1 0 6242 5563 2428 81 0 3 chr13 12408687 12408997 -89464172 - AluY SINE Alu -1 310 2 327 175 10 82 chr13 12410613 12410710 -89462459 + L1MC4 LINE L1 6614 6703 -1339 195 100 0 0 chr13 12410719 12410749 -89462420 + (TA)n Simple_repeat Simple_repeat 1 30 0 29 0 0 0 chr13 12411260 12411289 -89461880 + AT_rich Low_complexity Low_complexity 1 29 0 2219 105 10 0 chr13 12411289 12411594 -89461575 - AluY SINE Alu -3 308 1 2095 137 0 10 chr13 12411596 12411902 -89461267 - AluSx SINE Alu -9 303 1 1688 176 10 13 chr13 12412024 12412331 -89460838 - AluJo SINE Alu -6 306 1 645 180 7 50 chr13 12412336 12412475 -89460694 - FLAM_C SINE Alu 0 133 1 1793 106 30 0 chr13 12413182 12413447 -89459722 + AluSq SINE Alu 1 273 -40 783 0 0 0 chr13 12413479 12413566 -89459603 + (CA)n Simple_repeat Simple_repeat 1 87 0 2185 51 0 4 chr13 12413835 12414108 -89459061 - L1PA7 LINE L1 -4 6150 5879 1754 139 36 27 chr13 12414409 12414710 -89458459 + AluJb SINE Alu 1 304 -8 364 294 110 16 chr13 12415722 12415977 -89457192 + L1ME4a LINE L1 5552 5830 -291 274 183 256 7 chr13 12416394 12416476 -89456693 - MIR3 SINE MIR -4 204 104 24 67 0 0 chr13 12417410 12417455 -89455714 + AT_rich Low_complexity Low_complexity 1 45 0 282 242 65 0 chr13 12417572 12417634 -89455535 - L2 LINE L2 0 3313 3248 1249 226 186 26 chr13 12417768 12418269 -89454900 - MLT1G LTR MaLR 0 590 10 817 96 16 0 chr13 12419164 12419289 -89453880 - MER30 DNA MER1_type -103 127 1 672 114 124 6 chr13 12419456 12419620 -89453549 + L1M4 LINE L1 5225 5412 -743 * 1256 199 71 6 chr13 12419598 12419935 -89453234 - L1M4 LINE L1 -805 5839 5481 870 231 78 36 chr13 12419932 12419988 -89453181 - L1M4c LINE L1 -3344 3038 2986 * 1770 163 6 32 chr13 12419988 12420301 -89452868 - AluSx SINE Alu -7 305 1 870 231 78 36 chr13 12420301 12420603 -89452566 - L1M4c LINE L1 -3396 2986 2665 1000 204 109 6 chr13 12420605 12420973 -89452196 - L1M4c LINE L1 -3851 2531 2121 1237 191 211 56 chr13 12420980 12421426 -89451743 - MLT2B2 LTR ERVL 0 515 1 2498 218 60 34 chr13 12421440 12422299 -89450870 - L1M4c LINE L1 -4429 2134 1087 501 134 0 0 chr13 12422299 12422381 -89450788 - AluSp/q SINE Alu -6 307 226 1175 105 6 23 chr13 12422381 12422552 -89450617 - AluSx SINE Alu -122 190 23 2246 163 102 39 chr13 12422561 12423155 -89450014 - L1M4 LINE L1 -4893 1752 724 1417 221 58 120 chr13 12423176 12423801 -89449368 - L1M4 LINE L1 -5955 587 2 379 383 0 0 chr13 12424959 12425139 -89448030 + G-rich Low_complexity Low_complexity 1 180 0 200 365 0 0 chr13 12425163 12425237 -89447932 + G-rich Low_complexity Low_complexity 1 74 0 270 264 11 23 chr13 12425447 12425534 -89447635 + MIR SINE MIR 168 253 -9 730 171 0 14 chr13 12425741 12425887 -89447282 - L1MB7 LINE L1 -44 6140 5997 235 312 153 35 chr13 12425990 12426272 -89446897 + L2 LINE L2 1846 2160 -1154 27 29 0 0 chr13 12426680 12426714 -89446455 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr13 12429046 12429070 -89444099 + AT_rich Low_complexity Low_complexity 1 24 0 475 297 84 25 chr13 12429314 12429538 -89443631 - MIR SINE MIR -17 245 8 341 283 76 22 chr13 12431566 12431658 -89441511 - L2 LINE L2 -42 3230 3134 189 273 0 0 chr13 12431939 12431983 -89441186 + L2 LINE L2 3269 3312 -1 473 306 156 67 chr13 12433716 12434177 -89438992 + L3 LINE CR1 432 933 -644 341 44 0 0 chr13 12434439 12434484 -89438685 + MADE1 DNA Mariner 36 80 0 465 321 114 5 chr13 12434705 12434889 -89438280 - MIR SINE MIR -51 211 8 222 118 0 0 chr13 12437298 12437332 -89435837 + (TA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr13 12440301 12440332 -89432837 + AT_rich Low_complexity Low_complexity 1 31 0 579 263 98 16 chr13 12440523 12440717 -89432452 + MIR SINE MIR 53 262 0 3842 172 81 10 chr13 12442202 12442635 -89430534 + L1MB8 LINE L1 4947 5348 -830 1697 167 21 11 chr13 12442635 12442917 -89430252 + AluJb SINE Alu 1 285 -27 3842 172 81 10 chr13 12442917 12443619 -89429550 + L1MB8 LINE L1 5348 6162 -16 260 173 64 27 chr13 12443635 12443745 -89429424 + L1ME4a LINE L1 6005 6118 -3 41 21 0 0 chr13 12446237 12446285 -89426884 + AT_rich Low_complexity Low_complexity 1 48 0 853 167 73 0 chr13 12446592 12446742 -89426427 - FRAM SINE Alu -5 161 1 258 32 0 0 chr13 12447144 12447175 -89425994 + (TG)n Simple_repeat Simple_repeat 2 32 0 793 246 77 5 chr13 12447611 12447818 -89425351 + MER58A DNA MER1_type 1 222 -2 502 236 273 0 chr13 12448002 12448163 -89425006 + L2 LINE L2 3106 3310 -3 830 262 31 18 chr13 12448170 12448399 -89424770 - MIR SINE MIR -24 238 7 180 220 0 40 chr13 12448764 12448814 -89424355 + MIR SINE MIR 90 137 -125 2268 87 7 0 chr13 12450020 12450308 -89422861 - AluY SINE Alu -21 290 1 2037 149 7 0 chr13 12452117 12452425 -89420744 - AluSx SINE Alu -2 310 1 250 360 36 56 chr13 12452951 12453061 -89420108 + L2 LINE L2 2636 2747 -567 2255 70 47 7 chr13 12453061 12453360 -89419809 + AluY SINE Alu 1 311 0 250 360 36 56 chr13 12453360 12453499 -89419670 + L2 LINE L2 2747 2880 -434 673 252 109 0 chr13 12453786 12454080 -89419089 - L1MC3 LINE L1 -212 7573 7248 1986 145 0 7 chr13 12454252 12454548 -89418621 + AluSx SINE Alu 3 296 -16 906 210 0 0 chr13 12454576 12454733 -89418436 + AluJb SINE Alu 130 286 -26 192 205 77 0 chr13 12454747 12454786 -89418383 + L2 LINE L2 1753 1794 -1520 319 232 252 73 chr13 12455245 12455396 -89417773 - MER5B DNA MER1_type 0 178 1 582 268 149 9 chr13 12455398 12455734 -89417435 - L1ME LINE L1 -521 5641 5259 2390 66 7 23 chr13 12457622 12457926 -89415243 + AluY SINE Alu 1 299 -12 1702 163 11 0 chr13 12458318 12458600 -89414569 + AluJb SINE Alu 5 289 -23 324 245 158 38 chr13 12459086 12459270 -89413899 - L3 LINE CR1 -29 1548 1343 264 299 0 13 chr13 12459397 12459474 -89413695 - L2 LINE L2 -1 3312 3237 1528 167 11 14 chr13 12459550 12459825 -89413344 - AluJb SINE Alu -34 278 5 2236 79 11 0 chr13 12460564 12460869 -89412300 + AluY SINE Alu 1 308 0 192 362 78 7 chr13 12461369 12461510 -89411659 - L2 LINE L2 -1333 1981 1831 318 304 88 27 chr13 12461945 12462093 -89411076 - MIR SINE MIR -40 222 66 301 119 0 0 chr13 12462276 12462318 -89410851 - 5S rRNA rRNA -79 42 1 417 313 80 13 chr13 12462833 12462983 -89410186 - MIR SINE MIR -1 261 102 774 299 17 14 chr13 12463561 12463855 -89409314 - Charlie7 DNA MER1_type -2051 561 267 312 319 0 0 chr13 12463945 12464036 -89409133 + L1MC4 LINE L1 6613 6703 -1339 312 259 12 12 chr13 12464073 12464158 -89409011 + L1MC4 LINE L1 6614 6698 -1344 455 120 0 120 chr13 12464165 12464340 -89408829 + (TA)n Simple_repeat Simple_repeat 1 154 0 314 113 0 113 chr13 12464372 12464478 -89408691 + (TA)n Simple_repeat Simple_repeat 1 94 0 326 298 66 76 chr13 12465365 12465563 -89407606 - L1M2 LINE L1 -5818 1031 836 4405 164 70 42 chr13 12466511 12467645 -89405524 + L1MB3 LINE L1 4255 5356 -827 1859 137 7 0 chr13 12467645 12467923 -89405246 + AluSq SINE Alu 1 280 -33 270 0 0 0 chr13 12467923 12467953 -89405216 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4405 164 70 42 chr13 12467953 12468672 -89404497 + L1MB3 LINE L1 5355 6180 -3 279 238 99 45 chr13 12468665 12468888 -89404281 + L1ME4a LINE L1 5804 6038 -83 * 306 248 129 40 chr13 12469046 12469147 -89404022 - MIR SINE MIR -65 197 88 381 317 245 20 chr13 12469420 12470061 -89403108 + L3 LINE CR1 783 1567 -10 2696 122 9 45 chr13 12470145 12470587 -89402582 - MSTB LTR MaLR 0 426 1 304 356 31 36 chr13 12470962 12471156 -89402013 - MIR3 SINE MIR -7 201 9 412 263 18 18 chr13 12471359 12471473 -89401696 + MIR SINE MIR 21 134 -128 2137 139 24 32 chr13 12471730 12472104 -89401065 - MSTB2 LTR MaLR 0 457 87 340 264 52 46 chr13 12472203 12472361 -89400808 + MIR SINE MIR 16 172 -70 246 282 13 0 chr13 12473514 12473592 -89399577 + MIR3 SINE MIR 123 201 -7 450 255 94 20 chr13 12473781 12473930 -89399239 + L1ME3A LINE L1 6001 6160 -10 232 170 226 0 chr13 12474653 12474706 -89398463 + LTR16A LTR ERVL 359 423 -27 191 282 94 24 chr13 12475324 12475409 -89397760 - L2 LINE L2 -9 3263 3173 183 358 59 26 chr13 12475552 12475823 -89397346 - L2 LINE L2 -347 2967 2688 775 129 8 24 chr13 12476093 12476217 -89396952 - FLAM_C SINE Alu -11 132 11 26 82 0 0 chr13 12476316 12476377 -89396792 + AT_rich Low_complexity Low_complexity 1 61 0 598 267 137 22 chr13 12476622 12476954 -89396215 - L1ME3A LINE L1 -266 5912 5525 377 289 17 11 chr13 12476961 12477141 -89396028 - L1P5 LINE L1 -705 5451 5271 2377 92 0 0 chr13 12477142 12477436 -89395733 - AluSg SINE Alu -16 294 1 591 165 31 16 chr13 12477452 12477579 -89395590 - L1MB7 LINE L1 -19 6165 6037 735 143 0 0 chr13 12477586 12477698 -89395471 - L1MB7 LINE L1 -199 5985 5874 1109 124 0 0 chr13 12477705 12477866 -89395303 - AluSg/x SINE Alu -15 295 135 257 135 192 0 chr13 12477866 12477918 -89395251 - L1MB7 LINE L1 -314 5870 5809 322 137 20 0 chr13 12477918 12477969 -89395200 + LTR47A LTR ERVL 1 52 -400 180 111 0 0 chr13 12477969 12477996 -89395173 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 795 118 0 20 chr13 12478096 12478248 -89394921 + (TCCCC)n Simple_repeat Simple_repeat 4 152 0 2057 109 10 7 chr13 12478263 12478565 -89394604 - AluSc SINE Alu -6 303 1 1467 187 134 27 chr13 12478565 12478939 -89394230 + LTR47A LTR ERVL 39 452 0 6822 181 35 18 chr13 12478939 12480942 -89392227 - L1MB7 LINE L1 -371 5813 3790 1067 237 29 12 chr13 12480942 12481288 -89391881 - L1MB7 LINE L1 -2863 3283 2932 25 0 0 0 chr13 12481344 12481369 -89391800 + AT_rich Low_complexity Low_complexity 1 25 0 1005 152 30 0 chr13 12481459 12481623 -89391546 - FRAM SINE Alu -3 173 5 240 318 15 0 chr13 12481720 12481786 -89391383 + L1M4 LINE L1 4029 4095 -2051 307 208 117 13 chr13 12481810 12481887 -89391282 + MLT1K LTR MaLR 171 255 -333 285 75 0 0 chr13 12482054 12482094 -89391075 + (CA)n Simple_repeat Simple_repeat 2 41 0 203 306 56 56 chr13 12482094 12482238 -89390931 + MIR SINE MIR 109 252 -10 3002 153 20 24 chr13 12482502 12483053 -89390116 - L1MB3 LINE L1 0 6183 5635 203 313 38 15 chr13 12483120 12483251 -89389918 - MIR SINE MIR -118 144 11 651 254 88 12 chr13 12483871 12484111 -89389058 - MIR SINE MIR 0 262 5 1462 128 188 0 chr13 12484224 12484458 -89388711 + AluSg SINE Alu 20 297 -13 1877 154 3 0 chr13 12484576 12484869 -89388300 + AluJo SINE Alu 18 311 -1 3958 47 0 0 chr13 12484916 12485389 -89387780 - L1PA5 LINE L1 0 6154 5682 2075 241 120 17 chr13 12485502 12486142 -89387027 + L1ME3 LINE L1 5456 6161 -1 248 344 126 20 chr13 12486198 12486445 -89386724 - L2 LINE L2 -1 3271 2999 3389 197 70 19 chr13 12486445 12486618 -89386551 + L1MA4 LINE L1 5428 5591 -709 2612 53 0 0 chr13 12486618 12486917 -89386252 + AluY SINE Alu 1 299 -12 3389 197 70 19 chr13 12486917 12487572 -89385597 + L1MA4 LINE L1 5591 6298 -2 1174 148 13 52 chr13 12487586 12487749 -89385420 + L1MB3 LINE L1 5959 6112 -71 2283 114 0 0 chr13 12487749 12488046 -89385123 - AluSx SINE Alu -15 297 1 1174 148 13 52 chr13 12488046 12488111 -89385058 + L1MB3 LINE L1 6112 6178 -5 236 225 22 34 chr13 12488400 12488489 -89384680 + L2 LINE L2 3136 3223 -49 221 256 110 0 chr13 12488850 12488932 -89384237 + L2 LINE L2 3166 3256 -16 201 390 42 0 chr13 12489997 12490092 -89383077 + MIR SINE MIR 47 145 -117 2190 116 7 23 chr13 12490163 12490473 -89382696 + AluSx SINE Alu 1 305 -7 388 282 30 15 chr13 12490567 12490698 -89382471 - MIR SINE MIR -70 192 60 303 267 86 0 chr13 12490955 12491060 -89382109 + L2 LINE L2 3200 3313 0 239 188 0 0 chr13 12491253 12491301 -89381868 - L2 LINE L2 -21 3251 3204 249 300 0 0 chr13 12491312 12491382 -89381787 + MER91B DNA MER1_type 2 71 -119 913 125 0 0 chr13 12492253 12492381 -89380788 + FLAM_C SINE Alu 5 132 -1 2443 93 0 0 chr13 12495597 12495897 -89377272 - AluSx SINE Alu -12 300 1 278 359 90 9 chr13 12496028 12496240 -89376929 - MIR SINE MIR -21 241 13 377 315 47 8 chr13 12496403 12496530 -89376639 + L2 LINE L2 3141 3272 0 2281 118 0 6 chr13 12496853 12497168 -89376001 - AluSq SINE Alu 0 313 1 2408 107 0 0 chr13 12498305 12498613 -89374556 + AluSg SINE Alu 1 308 -2 2261 92 7 14 chr13 12500267 12500561 -89372608 + AluSx SINE Alu 1 292 -20 1377 239 107 9 chr13 12500830 12501290 -89371879 + MLT1D LTR MaLR 1 505 0 271 189 153 27 chr13 12501548 12501659 -89371510 + MIR SINE MIR 111 235 -27 305 219 14 14 chr13 12502612 12502685 -89370484 - L2 LINE L2 0 3272 3200 294 197 48 68 chr13 12502923 12503070 -89370099 - L1MC5 LINE L1 -35 7926 7783 965 194 47 93 chr13 12503096 12503482 -89369687 - L1ME2 LINE L1 -23 6141 5768 235 211 42 74 chr13 12503618 12503713 -89369456 + MLT1L LTR MaLR 3 94 -521 324 231 39 48 chr13 12504068 12504172 -89368997 + MLT1L LTR MaLR 168 270 -345 236 288 104 16 chr13 12504267 12504392 -89368777 + MLT1L LTR MaLR 466 601 -14 268 284 0 14 chr13 12505251 12505325 -89367844 + MLT1J LTR MaLR 112 184 -327 786 229 24 0 chr13 12505363 12505529 -89367640 + MER58A DNA MER1_type 1 170 -54 2300 55 0 44 chr13 12505766 12506099 -89367070 + AluY SINE Alu 1 320 0 666 265 76 5 chr13 12506218 12506403 -89366766 - LTR67 LTR ERVL 0 557 360 1152 209 57 72 chr13 12506489 12506522 -89366647 - MLT1A1 LTR MaLR -35 330 298 2157 118 10 0 chr13 12506522 12506828 -89366341 + AluSq SINE Alu 1 309 -4 1152 209 57 72 chr13 12506828 12507129 -89366040 - MLT1A1 LTR MaLR -67 298 1 718 217 92 56 chr13 12507131 12507299 -89365870 - MLT1B LTR MaLR -132 258 77 2360 76 3 0 chr13 12507299 12507609 -89365560 - AluY SINE Alu 0 311 1 718 217 92 56 chr13 12507609 12507689 -89365480 - MLT1B LTR MaLR -313 77 1 508 284 26 42 chr13 12507709 12507857 -89365312 - LTR67 LTR ERVL -369 188 42 1163 179 148 39 chr13 12507857 12508214 -89364955 - MSTD LTR MaLR 0 396 1 508 284 26 42 chr13 12508214 12508255 -89364914 - LTR67 LTR ERVL -515 42 2 26 0 0 0 chr13 12508434 12508460 -89364709 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr13 12508811 12508841 -89364328 + AT_rich Low_complexity Low_complexity 1 30 0 2203 193 31 13 chr13 12508980 12509432 -89363737 + LTR40b LTR ERVL 1 460 -2 469 300 44 0 chr13 12509445 12509605 -89363564 - MIR SINE MIR -49 213 47 198 0 0 0 chr13 12510149 12510171 -89362998 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 800 80 0 0 chr13 12510173 12510273 -89362896 - AluY SINE Alu -211 100 1 22 0 0 0 chr13 12510275 12510297 -89362872 + AT_rich Low_complexity Low_complexity 1 22 0 986 169 128 0 chr13 12510382 12510554 -89362615 + MER1B DNA MER1_type 29 222 -75 1097 90 7 0 chr13 12510559 12510714 -89362455 - L1MA5A LINE L1 -384 5913 5758 592 156 83 0 chr13 12510714 12510810 -89362359 - U6 snRNA snRNA 0 107 4 2340 107 0 7 chr13 12511058 12511367 -89361802 + AluSx SINE Alu 1 307 -5 2048 133 0 13 chr13 12511544 12511853 -89361316 - AluSg SINE Alu -5 305 1 2573 65 0 3 chr13 12511871 12512179 -89360990 - AluY SINE Alu -4 307 1 229 321 91 29 chr13 12512243 12512486 -89360683 - HAL1 LINE L1 -880 1627 1370 186 133 0 0 chr13 12512494 12512524 -89360645 + (T)n Simple_repeat Simple_repeat 1 30 0 1055 173 35 0 chr13 12512576 12512749 -89360420 - AluJo SINE Alu -49 263 85 1478 221 48 28 chr13 12513056 12513450 -89359719 - L1ME2 LINE L1 -1 6163 5762 351 0 0 0 chr13 12513563 12513602 -89359567 + (CA)n Simple_repeat Simple_repeat 2 40 0 1973 127 0 0 chr13 12513606 12513882 -89359287 - AluSx SINE Alu -36 276 1 2273 69 14 0 chr13 12514211 12514500 -89358669 - AluY SINE Alu -18 293 1 1838 125 59 59 chr13 12515623 12515998 -89357171 - THE1C LTR MaLR 0 375 1 207 0 0 0 chr13 12516516 12516539 -89356630 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2128 128 0 6 chr13 12517253 12517565 -89355604 + AluSx SINE Alu 1 310 -2 2617 137 31 24 chr13 12518189 12518614 -89354555 - MSTC LTR MaLR 0 428 1 427 224 154 6 chr13 12519220 12519376 -89353793 + LTR33A LTR ERVL 9 187 -336 560 246 53 6 chr13 12519408 12519579 -89353590 + LTR33A LTR ERVL 343 521 -2 831 184 184 30 chr13 12519584 12519892 -89353277 + MSTD LTR MaLR 1 396 0 337 238 81 25 chr13 12520310 12520470 -89352699 - L1ME4a LINE L1 -4 6117 5949 2062 129 0 4 chr13 12522190 12522469 -89350700 + AluSx SINE Alu 1 278 -34 297 0 0 0 chr13 12522469 12522502 -89350667 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 2299 140 74 2 chr13 12523000 12523406 -89349763 + L1MB3 LINE L1 5734 6168 -15 222 278 46 37 chr13 12523422 12523530 -89349639 - L2 LINE L2 -615 2699 2591 2068 104 3 47 chr13 12524289 12524587 -89348582 - AluSx SINE Alu -23 289 5 225 266 63 0 chr13 12524802 12524881 -89348288 + MIR SINE MIR 58 141 -67 443 294 60 28 chr13 12525151 12525399 -89347770 + MIR SINE MIR 2 257 -5 1438 172 52 13 chr13 12525962 12526393 -89346776 + LTR45B LTR ERV1 4 603 0 212 228 11 87 chr13 12526460 12526552 -89346617 - MER5A DNA MER1_type -69 120 36 2021 135 3 7 chr13 12526725 12527029 -89346140 + AluJo SINE Alu 9 311 -1 270 0 0 0 chr13 12527438 12527468 -89345701 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1493 195 11 14 chr13 12527470 12527752 -89345417 - AluJo SINE Alu -31 281 1 2356 104 10 0 chr13 12527827 12528136 -89345033 + AluSx SINE Alu 1 312 0 2212 152 47 2 chr13 12528225 12528626 -89344543 - L1MC1 LINE L1 0 6333 5915 266 313 31 0 chr13 12528711 12528807 -89344362 + MIR3 SINE MIR 87 185 -23 206 306 0 0 chr13 12528875 12528937 -89344232 + L2 LINE L2 3207 3268 -4 2310 140 102 12 chr13 12529564 12529626 -89343543 + LOR1b LTR ERV1 1 56 -405 1715 158 0 11 chr13 12529626 12529899 -89343270 + AluJo SINE Alu 1 270 -42 2310 140 102 12 chr13 12529899 12530257 -89342912 + LOR1b LTR ERV1 56 459 -2 27 29 0 0 chr13 12530946 12530980 -89342189 + AT_rich Low_complexity Low_complexity 1 34 0 295 316 50 18 chr13 12531015 12531297 -89341872 - L1ME LINE L1 -303 5818 5528 227 214 125 0 chr13 12531305 12531361 -89341808 - MLT1J LTR MaLR 0 555 493 520 184 136 0 chr13 12531363 12531466 -89341703 + FLAM_C SINE Alu 2 118 -25 22 0 0 0 chr13 12531466 12531488 -89341681 + AT_rich Low_complexity Low_complexity 1 22 0 193 273 227 9 chr13 12532886 12532996 -89340173 - MIR SINE MIR -109 153 20 852 147 0 0 chr13 12533429 12533558 -89339611 - FRAM SINE Alu -10 166 38 312 310 9 18 chr13 12533920 12534033 -89339136 - MIR SINE MIR -63 145 34 942 235 4 30 chr13 12534269 12534503 -89338666 + MIR SINE MIR 5 232 -30 378 0 0 0 chr13 12534545 12534587 -89338582 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2376 52 3 11 chr13 12534591 12534878 -89338291 - AluY SINE Alu -26 285 1 2631 45 3 3 chr13 12535861 12536171 -89336998 + AluY SINE Alu 1 310 -1 192 152 0 0 chr13 12536757 12536790 -89336379 + (CA)n Simple_repeat Simple_repeat 2 34 0 1973 135 6 35 chr13 12536939 12537257 -89335912 + AluJo SINE Alu 1 309 -3 2309 75 0 3 chr13 12537676 12537987 -89335182 - AluY SINE Alu 0 310 1 2158 110 10 0 chr13 12537991 12538281 -89334888 - AluSx SINE Alu -19 293 1 2569 65 0 0 chr13 12538795 12539104 -89334065 - AluY SINE Alu -2 309 1 691 109 117 16 chr13 12539143 12539271 -89333898 - AluJb SINE Alu -171 141 1 1571 65 0 0 chr13 12539447 12539631 -89333538 - AluY SINE Alu -127 184 1 239 307 88 22 chr13 12540432 12540569 -89332600 - MLT1J LTR MaLR -67 444 299 457 185 91 194 chr13 12540602 12540942 -89332227 - MLT1J LTR MaLR -206 305 1 2234 111 0 10 chr13 12541681 12541987 -89331182 - AluSx SINE Alu -7 305 3 2067 109 0 68 chr13 12543849 12544171 -89328998 - AluSg SINE Alu -10 300 1 401 300 135 31 chr13 12544672 12544932 -89328237 + L3b LINE CR1 1244 1530 -53 2191 124 7 0 chr13 12545393 12545700 -89327469 + AluSx SINE Alu 1 309 -3 2259 82 0 0 chr13 12546343 12546664 -89326505 + AluSx SINE Alu 1 321 0 726 200 113 16 chr13 12547154 12547339 -89325830 + MIR SINE MIR 59 261 -1 209 348 65 11 chr13 12549235 12549327 -89323842 - L2 LINE L2 -47 3225 3129 243 256 44 22 chr13 12549691 12549781 -89323388 - L2 LINE L2 -681 2633 2542 341 318 8 0 chr13 12549904 12550030 -89323139 - L1M4 LINE L1 -3788 2358 2232 2210 81 21 7 chr13 12550069 12550354 -89322815 - AluY SINE Alu -22 289 1 1428 194 77 45 chr13 12551117 12551518 -89321651 + L1ME2 LINE L1 5687 6100 -64 183 200 33 50 chr13 12551953 12552013 -89321156 + MER5A DNA MER1_type 129 187 -2 845 166 13 6 chr13 12552116 12552273 -89320896 - L1PB3 LINE L1 -2 6152 5995 2280 112 0 3 chr13 12552755 12553058 -89320111 + AluSx SINE Alu 4 305 -7 274 269 92 43 chr13 12553246 12553387 -89319782 - L1MC5 LINE L1 -542 7419 7272 427 270 70 69 chr13 12553576 12553617 -89319552 - L1MC5 LINE L1 -754 7207 7168 1980 139 14 0 chr13 12553617 12553912 -89319257 - AluJo SINE Alu -12 300 2 427 270 70 69 chr13 12553912 12554220 -89318949 - L1MC5 LINE L1 -793 7168 6876 230 231 162 46 chr13 12554236 12554452 -89318717 + L1MC5 LINE L1 7576 7816 -145 2506 55 3 10 chr13 12554780 12555089 -89318080 - AluY SINE Alu -4 307 1 27 73 0 0 chr13 12555361 12555416 -89317753 + AT_rich Low_complexity Low_complexity 1 55 0 1393 266 104 27 chr13 12556132 12557102 -89316067 - L2 LINE L2 -38 3275 2230 2738 116 30 25 chr13 12557914 12558345 -89314824 + Tigger2a DNA MER2_type 1 433 -1 2191 99 3 0 chr13 12559603 12559897 -89313272 - AluSx SINE Alu -17 295 1 188 264 96 64 chr13 12560182 12560307 -89312862 + L3 LINE CR1 1056 1184 -393 2026 150 0 10 chr13 12560317 12560623 -89312546 + AluJo SINE Alu 3 305 -7 234 0 0 0 chr13 12560724 12560750 -89312419 + (A)n Simple_repeat Simple_repeat 1 26 0 1521 170 14 22 chr13 12560752 12561028 -89312141 - AluJo SINE Alu -38 274 1 2690 46 0 0 chr13 12562183 12562488 -89310681 + AluY SINE Alu 1 305 -6 29 47 0 0 chr13 12565680 12565723 -89307446 + AT_rich Low_complexity Low_complexity 1 43 0 3044 130 29 6 chr13 12567454 12567937 -89305232 - L1PB2 LINE L1 -7 6144 5651 2367 202 116 3 chr13 12567937 12568547 -89304622 + L1 LINE L1 4725 5403 -743 471 155 282 0 chr13 12569092 12569195 -89303974 - FLAM_C SINE Alu 0 133 2 192 77 0 0 chr13 12569910 12569936 -89303233 + (T)n Simple_repeat Simple_repeat 1 26 0 437 234 91 7 chr13 12570282 12570436 -89302733 + MLT1J LTR MaLR 189 355 -156 673 156 52 22 chr13 12571108 12571243 -89301926 - FLAM_C SINE Alu -3 140 2 358 281 56 25 chr13 12571571 12571731 -89301438 - L1MC4a LINE L1 -1877 5931 5767 1255 141 5 0 chr13 12571755 12571940 -89301229 - AluJb SINE Alu -126 186 1 236 262 33 0 chr13 12572908 12572969 -89300200 + L2 LINE L2 3247 3309 -4 180 275 125 38 chr13 12572939 12573019 -89300150 - L2 LINE L2 -789 2525 2439 * 240 292 108 33 chr13 12573420 12573540 -89299629 + MIR SINE MIR 8 136 -126 201 247 204 81 chr13 12573630 12573816 -89299353 + L2 LINE L2 2885 3093 -220 213 186 34 102 chr13 12573838 12573897 -89299272 + L2 LINE L2 3200 3254 -59 739 224 7 0 chr13 12574982 12575129 -89298040 + MER5B DNA MER1_type 27 174 -4 311 138 219 0 chr13 12575129 12575202 -89297967 + FLAM_A SINE Alu 2 85 -48 183 80 0 0 chr13 12575279 12575304 -89297865 + (A)n Simple_repeat Simple_repeat 1 25 0 189 255 43 0 chr13 12575344 12575391 -89297778 + MER5A DNA MER1_type 140 188 -1 203 343 0 0 chr13 12575636 12575706 -89297463 + MIR SINE MIR 98 167 -95 261 353 133 0 chr13 12576087 12576237 -89296932 + MIR SINE MIR 22 191 -71 2041 131 0 28 chr13 12576458 12576779 -89296390 - AluSx SINE Alu 0 312 1 333 102 0 0 chr13 12576842 12576901 -89296268 + (TG)n Simple_repeat Simple_repeat 2 60 0 417 135 144 48 chr13 12577045 12577149 -89296020 + MER5B DNA MER1_type 1 114 -64 235 369 0 0 chr13 12577256 12577359 -89295810 + L2 LINE L2 2605 2707 -607 578 224 97 81 chr13 12578528 12578887 -89294282 + MLT1H LTR MaLR 55 576 -14 2128 131 37 100 chr13 12578962 12579420 -89293749 - MSTB1 LTR MaLR 0 432 4 298 245 66 19 chr13 12579566 12579672 -89293497 - L1MC5 LINE L1 -44 7917 7807 276 197 30 30 chr13 12580154 12580220 -89292949 + MIR3 SINE MIR 141 206 -2 233 94 0 0 chr13 12580279 12580311 -89292858 + MIR3 SINE MIR 175 206 -2 819 256 68 8 chr13 12580565 12580799 -89292370 + MIR SINE MIR 12 259 -3 1183 269 59 6 chr13 12580918 12581238 -89291931 + MLT1E LTR MaLR 257 593 0 700 201 81 77 chr13 12581404 12581435 -89291734 - MER6B DNA MER2_type -655 210 181 2106 110 0 0 chr13 12581435 12581734 -89291435 + AluSx SINE Alu 1 299 -13 700 201 81 77 chr13 12581734 12581911 -89291258 - MER6B DNA MER2_type -684 181 1 481 193 179 7 chr13 12582348 12582493 -89290676 + MIR SINE MIR 90 259 -3 206 278 37 0 chr13 12584347 12584401 -89288768 + CT-rich Low_complexity Low_complexity 2 57 0 1212 176 60 4 chr13 12584405 12584638 -89288531 - AluJo SINE Alu -54 258 13 1955 100 39 0 chr13 12584728 12584851 -89288318 + AluSg SINE Alu 2 119 -191 920 42 17 0 chr13 12584851 12584971 -89288198 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 1955 100 39 0 chr13 12584971 12585126 -89288043 + AluSg SINE Alu 119 291 -19 2051 115 0 3 chr13 12585417 12585731 -89287438 - AluSx SINE Alu 0 313 1 309 164 49 0 chr13 12586420 12586481 -89286688 - MER90 LTR ERV1 -2 573 510 510 167 31 10 chr13 12586791 12586887 -89286282 + LTR16A1 LTR ERVL 350 447 -10 601 231 37 77 chr13 12586890 12587189 -89285980 - HAL1 LINE L1 -42 2465 2179 2044 127 0 3 chr13 12587202 12587509 -89285660 + AluSc SINE Alu 1 306 -3 1025 266 21 8 chr13 12587528 12587765 -89285404 - MIR SINE MIR -21 241 2 498 251 124 26 chr13 12587771 12588038 -89285131 - HAL1 LINE L1 -324 2183 1891 594 145 0 0 chr13 12588041 12588124 -89285045 - AluS SINE Alu -229 84 2 2525 200 95 97 chr13 12588124 12588389 -89284780 - HAL1 LINE L1 -605 1902 1638 1649 152 19 35 chr13 12588389 12588699 -89284470 + AluJb SINE Alu 6 310 -2 2525 200 95 97 chr13 12588699 12589493 -89283676 - HAL1 LINE L1 -869 1638 845 773 206 141 5 chr13 12589494 12589678 -89283491 + MER34C LTR ERV1 4 212 -373 1033 160 0 0 chr13 12589685 12589854 -89283315 + FRAM SINE Alu 1 169 -7 494 224 120 118 chr13 12589909 12590275 -89282894 + LTR48 LTR ERV1 219 787 0 402 227 275 24 chr13 12590346 12590593 -89282576 - HAL1 LINE L1 -1768 739 431 1529 225 73 39 chr13 12590654 12591147 -89282022 + LTR53 LTR ERVL 3 512 -7 222 220 0 20 chr13 12591156 12591206 -89281963 + (TG)n Simple_repeat Simple_repeat 1 49 0 338 169 127 0 chr13 12591208 12591279 -89281890 - HAL1 LINE L1 -2126 381 302 792 216 70 12 chr13 12591294 12591465 -89281704 + MIR SINE MIR 33 213 -49 610 261 15 20 chr13 12591481 12591676 -89281493 + HAL1 LINE L1 12 205 -2302 342 238 0 0 chr13 12592130 12592193 -89280976 - L2 LINE L2 -39 3274 3212 1943 131 23 7 chr13 12592221 12592527 -89280642 - AluSx SINE Alu -1 311 1 688 123 0 0 chr13 12594022 12594128 -89279041 + AluSg/x SINE Alu 204 309 -1 263 294 76 0 chr13 12594482 12594574 -89278595 - L2 LINE L2 -5 3267 3169 3331 208 64 40 chr13 12596334 12596766 -89276403 + MER63D DNA MER1_type 1 422 -639 2140 106 0 0 chr13 12596766 12597059 -89276110 + AluSq SINE Alu 2 294 -19 3331 208 64 40 chr13 12597059 12597663 -89275506 + MER63D DNA MER1_type 422 1061 0 1021 122 37 0 chr13 12598179 12598343 -89274826 - AluSx SINE Alu -1 311 142 2820 135 10 70 chr13 12598344 12598855 -89274314 - LTR12 LTR ERV1 -234 480 1 1081 103 0 0 chr13 12598855 12599000 -89274169 - AluSx SINE Alu -168 145 1 1791 155 3 7 chr13 12601774 12602077 -89271092 + AluSx SINE Alu 3 304 -8 2294 95 0 0 chr13 12602077 12602383 -89270786 + AluY SINE Alu 1 306 -5 230 303 50 20 chr13 12602460 12602559 -89270610 - L2 LINE L2 -19 3294 3193 821 161 14 14 chr13 12602639 12602798 -89270371 - MER63 DNA MER1_type -53 783 12 1222 170 166 96 chr13 12604343 12604706 -89268463 + Charlie1 DNA MER1_type 1 337 -2424 1969 100 0 0 chr13 12604706 12604967 -89268202 - AluSx SINE Alu -46 266 6 1222 170 166 96 chr13 12604967 12605092 -89268077 + Charlie1 DNA MER1_type 337 2761 0 246 184 0 0 chr13 12605101 12605150 -89268019 + Alu SINE Alu 80 128 -5 2840 201 14 12 chr13 12605421 12605994 -89267175 - L1MD1 LINE L1 -207 6035 5462 1779 151 3 17 chr13 12606000 12606292 -89266877 - AluJo SINE Alu -24 288 1 359 177 0 13 chr13 12606317 12606396 -89266773 - L1MD1 LINE L1 -1103 5043 4966 697 224 50 6 chr13 12606411 12606590 -89266579 - L1MD1 LINE L1 -1236 4910 4724 2065 104 0 0 chr13 12606695 12606975 -89266194 - AluSc SINE Alu -24 285 6 386 171 158 0 chr13 12607034 12607110 -89266059 + MIR SINE MIR 61 148 -60 720 250 137 103 chr13 12607595 12607920 -89265249 + L1MC5 LINE L1 5604 5916 -1892 2248 98 0 0 chr13 12607920 12608215 -89264954 - AluSg SINE Alu -15 295 1 315 49 0 0 chr13 12608215 12608256 -89264913 + L1MB7 LINE L1 6130 6170 -14 720 250 137 103 chr13 12608256 12609150 -89264019 + L1MC5 LINE L1 5915 6830 -978 1383 99 21 52 chr13 12609151 12609384 -89263785 + AluSc SINE Alu 83 308 -1 1792 216 109 88 chr13 12609481 12609670 -89263499 + L1MC5 LINE L1 6980 7163 -798 2062 111 44 0 chr13 12609670 12609967 -89263202 + AluSx SINE Alu 3 312 0 1792 216 109 88 chr13 12609967 12610668 -89262501 + L1MC5 LINE L1 7163 7889 -72 273 167 0 0 chr13 12611140 12611194 -89261975 + CT-rich Low_complexity Low_complexity 1 54 0 1928 141 0 13 chr13 12611930 12612243 -89260926 + AluJo SINE Alu 1 309 -3 1606 89 0 0 chr13 12612828 12613126 -89260043 - AluSc SINE Alu 0 364 67 198 238 24 0 chr13 12613438 12613480 -89259689 + MIR SINE MIR 212 254 -8 271 164 15 15 chr13 12614566 12614633 -89258536 + GA-rich Low_complexity Low_complexity 4 70 0 726 200 109 29 chr13 12614651 12614826 -89258343 - MIR SINE MIR -54 208 20 3646 141 75 83 chr13 12614945 12615737 -89257432 - LTR1 LTR ERV1 0 785 1 196 281 146 0 chr13 12616917 12617006 -89256163 + L2 LINE L2 3169 3270 -2 1639 254 33 60 chr13 12619431 12619677 -89253492 + L1MB3 LINE L1 4559 4810 -1336 1548 178 64 0 chr13 12619677 12619799 -89253370 + AluJb SINE Alu 1 114 -198 239 0 32 0 chr13 12619799 12619830 -89253339 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1548 178 64 0 chr13 12619830 12619988 -89253181 + AluJb SINE Alu 114 299 -13 1639 254 33 60 chr13 12619988 12620395 -89252774 + L1MB3 LINE L1 4810 5191 -955 2200 91 7 7 chr13 12620395 12620691 -89252478 + AluSq SINE Alu 1 296 -17 1639 254 33 60 chr13 12620691 12620801 -89252368 + L1MB3 LINE L1 5191 5302 -844 975 240 48 0 chr13 12620806 12621035 -89252134 + MER69B DNA AcHobo 200 439 -787 * 1023 236 158 27 chr13 12621034 12621168 -89252001 + MER69B DNA AcHobo 556 671 -1855 1635 156 41 4 chr13 12621168 12621473 -89251696 - AluJb SINE Alu 0 317 3 1023 236 158 27 chr13 12621473 12621710 -89251459 + MER69B DNA AcHobo 671 977 -249 2592 172 25 6 chr13 12621716 12622187 -89250982 + L1MB3 LINE L1 5453 5932 -251 973 199 69 6 chr13 12622389 12622616 -89250553 + L1MB3 LINE L1 5906 6142 -41 2041 120 20 0 chr13 12622623 12622924 -89250245 - AluSg SINE Alu -3 307 1 1442 129 9 0 chr13 12623833 12624050 -89249119 + AluSg/x SINE Alu 77 295 -17 596 286 182 14 chr13 12625636 12625856 -89247313 - MIR SINE MIR -3 259 3 501 246 131 50 chr13 12626713 12626912 -89246257 + MIR SINE MIR 48 262 0 776 239 162 3 chr13 12626977 12627316 -89245853 + LTR16A1 LTR ERVL 1 393 -64 260 336 133 7 chr13 12627364 12627635 -89245534 - L2 LINE L2 -52 3220 2916 1133 180 114 4 chr13 12628718 12628973 -89244196 + L1MB4 LINE L1 5898 6180 0 256 214 63 151 chr13 12629449 12629575 -89243594 - MIR SINE MIR -60 148 34 182 294 156 56 chr13 12629901 12630081 -89243088 - MIR SINE MIR -6 256 59 280 232 0 0 chr13 12630088 12630144 -89243025 + L2 LINE L2 3217 3272 0 733 176 24 0 chr13 12630465 12630590 -89242579 - FLAM_C SINE Alu -14 129 2 2223 102 0 0 chr13 12630691 12630986 -89242183 - AluSc SINE Alu -14 295 1 2300 72 0 13 chr13 12632724 12633030 -89240139 + AluSq SINE Alu 1 302 -11 841 182 7 0 chr13 12633300 12633454 -89239715 + FRAM SINE Alu 1 155 -21 1600 106 4 13 chr13 12633462 12633697 -89239472 + AluSq SINE Alu 1 233 -80 413 73 104 31 chr13 12633803 12633899 -89239270 + AluSc SINE Alu 183 285 -24 22 0 0 0 chr13 12633906 12633928 -89239241 + AT_rich Low_complexity Low_complexity 1 22 0 1941 138 7 0 chr13 12633928 12634233 -89238936 + AluSq SINE Alu 1 307 -6 278 305 48 19 chr13 12634709 12634814 -89238355 - MIR SINE MIR -71 137 30 406 252 208 6 chr13 12634834 12634993 -89238176 - MIR SINE MIR -12 250 60 208 266 31 16 chr13 12635044 12635108 -89238061 + L3 LINE CR1 445 509 -1068 2343 90 0 0 chr13 12635539 12635850 -89237319 - AluSq SINE Alu -2 311 1 549 99 0 99 chr13 12637434 12637535 -89235634 + FRAM SINE Alu 56 146 -30 504 0 0 0 chr13 12637536 12637592 -89235577 + (CA)n Simple_repeat Simple_repeat 2 57 0 2034 91 35 0 chr13 12637598 12637883 -89235286 + AluSx SINE Alu 1 295 -17 29 0 0 0 chr13 12637894 12637923 -89235246 + AT_rich Low_complexity Low_complexity 1 29 0 1992 122 20 0 chr13 12638301 12638605 -89234564 - AluSx SINE Alu -2 310 1 294 234 78 0 chr13 12638633 12638710 -89234459 - L2 LINE L2 -1 3312 3230 1914 109 14 14 chr13 12639253 12639567 -89233602 - AluSx SINE Alu 0 314 1 1491 141 21 62 chr13 12639584 12639874 -89233295 - AluJo SINE Alu -24 288 11 235 143 18 18 chr13 12640559 12640615 -89232554 + CT-rich Low_complexity Low_complexity 3 58 0 686 178 34 0 chr13 12640617 12640735 -89232434 - FLAM_C SINE Alu -11 122 1 22 0 0 0 chr13 12640899 12640921 -89232248 + AT_rich Low_complexity Low_complexity 1 22 0 193 288 34 0 chr13 12641034 12641093 -89232076 - MIR SINE MIR 0 262 202 229 362 0 0 chr13 12641136 12641205 -89231964 - MIR SINE MIR -180 82 14 2185 74 0 49 chr13 12641354 12641680 -89231489 + AluY SINE Alu 1 310 -1 430 285 237 4 chr13 12641744 12641972 -89231197 + L3 LINE CR1 1276 1556 -21 232 326 104 14 chr13 12642006 12642150 -89231019 - L2 LINE L2 -818 2496 2340 183 240 184 64 chr13 12642479 12642604 -89230565 - L2 LINE L2 -459 2855 2716 205 281 44 59 chr13 12642719 12642854 -89230315 + L2 LINE L2 2918 3050 -222 4054 138 36 14 chr13 12642977 12643298 -89229871 - L1PB4 LINE L1 -2 6154 5842 522 0 0 0 chr13 12643298 12643356 -89229813 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 2066 93 11 0 chr13 12643357 12643637 -89229532 - AluSx SINE Alu -29 283 1 4054 138 36 14 chr13 12643637 12644037 -89229132 - L1PB4 LINE L1 -313 5843 5415 220 204 0 0 chr13 12644111 12644160 -89229009 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 469 231 10 0 chr13 12644862 12644966 -89228203 + MIR SINE MIR 58 162 -100 184 149 11 43 chr13 12645509 12645603 -89227566 + (CA)n Simple_repeat Simple_repeat 2 92 0 313 310 65 13 chr13 12646233 12646388 -89226781 + MIR SINE MIR 35 197 -65 1601 163 0 39 chr13 12646389 12646695 -89226474 + AluJo SINE Alu 2 295 -17 583 108 20 10 chr13 12646699 12646801 -89226368 + (GGAA)n Simple_repeat Simple_repeat 2 104 0 2775 112 65 83 chr13 12647285 12647778 -89225391 + LTR12 LTR ERV1 1 484 -230 215 350 25 0 chr13 12647880 12647960 -89225209 - L2 LINE L2 0 3313 3232 288 53 0 0 chr13 12648999 12649037 -89224132 + (CA)n Simple_repeat Simple_repeat 1 38 0 1713 75 4 0 chr13 12649170 12649397 -89223772 - AluSq SINE Alu -1 312 85 346 183 49 28 chr13 12649448 12649590 -89223579 + (TG)n Simple_repeat Simple_repeat 1 145 0 341 164 38 25 chr13 12649603 12649762 -89223407 + (TG)n Simple_repeat Simple_repeat 1 161 0 204 174 43 0 chr13 12649774 12649820 -89223349 + (TG)n Simple_repeat Simple_repeat 1 48 0 183 97 161 0 chr13 12650731 12650762 -89222407 - L3b LINE CR1 -176 1407 1372 238 323 172 0 chr13 12651349 12651448 -89221721 - L2 LINE L2 -1 3271 3156 1689 157 13 13 chr13 12653557 12653857 -89219312 - AluJo SINE Alu -12 300 1 2213 75 0 32 chr13 12654090 12654398 -89218771 - AluY SINE Alu -13 298 1 306 73 0 0 chr13 12654456 12654497 -89218672 + (TA)n Simple_repeat Simple_repeat 1 41 0 223 240 20 0 chr13 12654607 12654657 -89218512 + (TA)n Simple_repeat Simple_repeat 1 51 0 1852 130 55 0 chr13 12654781 12655073 -89218096 - AluSx SINE Alu -4 308 1 552 111 0 0 chr13 12655073 12655163 -89218006 + (TTC)n Simple_repeat Simple_repeat 1 90 0 827 162 0 29 chr13 12655164 12655300 -89217869 - FLAM_C SINE Alu -1 132 1 788 223 29 11 chr13 12655352 12655527 -89217642 + MER5B DNA MER1_type 1 178 0 414 0 0 0 chr13 12655790 12655836 -89217333 + (CA)n Simple_repeat Simple_repeat 2 47 0 1833 171 36 6 chr13 12656154 12656487 -89216682 + MER2 DNA MER2_type 2 344 0 2078 104 0 13 chr13 12657299 12657785 -89215384 + AluSx SINE Alu 1 312 0 242 191 0 32 chr13 12657788 12657851 -89215318 + GA-rich Low_complexity Low_complexity 4 64 0 469 235 17 42 chr13 12658593 12658712 -89214457 - MIR SINE MIR -119 143 28 200 33 0 33 chr13 12658934 12658964 -89214205 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2183 79 0 0 chr13 12658968 12659247 -89213922 - AluSg SINE Alu -31 279 1 386 274 75 35 chr13 12659286 12659487 -89213682 + L1MC5 LINE L1 7025 7233 -728 296 237 66 0 chr13 12659471 12659547 -89213622 - L1MC4 LINE L1 -165 7877 7797 * 180 0 0 0 chr13 12659701 12659721 -89213448 + (A)n Simple_repeat Simple_repeat 1 20 0 421 269 90 25 chr13 12659827 12660028 -89213141 + L1MC5 LINE L1 7273 7486 -475 * 769 192 44 83 chr13 12660000 12660229 -89212940 + L1ME1 LINE L1 5944 6163 -1 286 260 121 90 chr13 12660236 12660276 -89212893 + L1MC4 LINE L1 7561 7598 -444 1801 137 22 0 chr13 12660276 12660589 -89212580 - AluJb SINE Alu 0 319 1 286 260 121 90 chr13 12660589 12660855 -89212314 + L1MC4 LINE L1 7598 7883 -159 4391 88 14 0 chr13 12660855 12661449 -89211720 - L1PA10 LINE L1 0 6168 5567 286 260 121 90 chr13 12661449 12661505 -89211664 + L1MC4 LINE L1 7883 7936 -106 532 235 0 0 chr13 12661506 12661608 -89211561 + Tigger3b DNA MER2_type 1 102 -1129 3616 180 119 25 chr13 12661627 12662373 -89210796 + Tigger3b DNA MER2_type 260 1103 -1925 5577 134 28 9 chr13 12662373 12663276 -89209893 + MER49 LTR ERV1 3 922 -1 3616 180 119 25 chr13 12663276 12663414 -89209755 + Tigger3b DNA MER2_type 1103 1227 -4 1586 125 31 4 chr13 12663523 12663779 -89209390 - L1MC1 LINE L1 -18 6315 6053 3192 135 19 2 chr13 12663779 12664330 -89208839 - L1MC1 LINE L1 -590 5743 5187 2076 113 14 0 chr13 12664362 12664653 -89208516 + AluSx SINE Alu 1 295 -17 2594 118 6 3 chr13 12665311 12665674 -89207495 + THE1B LTR MaLR 1 364 0 229 316 86 17 chr13 12665792 12665909 -89207260 + L2 LINE L2 3136 3260 -12 259 274 98 0 chr13 12667146 12667248 -89205921 + L2 LINE L2 1958 2069 -1245 1238 215 69 163 chr13 12667248 12667886 -89205283 + MLT1G3 LTR MaLR 1 530 0 1461 292 47 55 chr13 12667890 12667955 -89205214 + L2 LINE L2 2072 2136 -1178 917 161 32 16 chr13 12667955 12668141 -89205028 - MER53 DNA DNA 0 189 1 1461 292 47 55 chr13 12668141 12668728 -89204441 + L2 LINE L2 2136 2720 -594 1718 161 0 23 chr13 12668728 12669032 -89204137 + AluJo SINE Alu 11 307 -5 1461 292 47 55 chr13 12669032 12669127 -89204042 + L2 LINE L2 2720 2814 -500 1853 143 0 7 chr13 12669163 12669449 -89203720 + AluJb SINE Alu 21 304 -8 232 211 84 21 chr13 12669508 12669603 -89203566 - L1MCa LINE L1 -4743 1683 1583 2137 113 3 0 chr13 12669669 12669978 -89203191 - AluSq SINE Alu -3 310 1 308 263 81 64 chr13 12670145 12670381 -89202788 - L1ME3A LINE L1 0 6170 5931 361 255 0 69 chr13 12670402 12670549 -89202620 - L1ME3A LINE L1 -202 5968 5835 1561 181 16 29 chr13 12670549 12670864 -89202305 - AluJo SINE Alu -1 311 1 361 255 0 69 chr13 12670864 12670904 -89202265 - L1ME3A LINE L1 -335 5835 5794 234 186 0 0 chr13 12671034 12671077 -89202092 - L1ME3A LINE L1 -344 5818 5776 814 305 66 81 chr13 12671348 12671820 -89201349 - L3 LINE CR1 -5 1572 1108 249 188 0 42 chr13 12672312 12672360 -89200809 + 7SK RNA RNA 2 47 -146 970 258 87 18 chr13 12672731 12672758 -89200411 + L1ME LINE L1 4900 4924 -1222 2291 72 7 10 chr13 12672758 12673065 -89200104 + AluSx SINE Alu 3 308 -4 970 258 87 18 chr13 12673065 12673495 -89199674 + L1ME LINE L1 4924 5389 -757 1043 181 0 19 chr13 12673497 12673702 -89199467 + AluJo SINE Alu 87 287 -25 1492 163 11 43 chr13 12673734 12674016 -89199153 + AluJo SINE Alu 1 273 -39 626 216 0 0 chr13 12673918 12674029 -89199140 + AluJo/FRAM SINE Alu 176 286 -26 304 179 36 0 chr13 12674026 12674082 -89199087 - L1MC4 LINE L1 -1337 6705 6648 * 318 206 0 0 chr13 12674029 12674102 -89199067 + (TA)n Simple_repeat Simple_repeat 1 73 0 661 249 126 31 chr13 12674102 12674386 -89198783 + L1ME LINE L1 5360 5670 -495 3068 213 20 23 chr13 12674386 12675117 -89198052 + L1MC1 LINE L1 4578 5306 -840 1894 129 0 31 chr13 12675120 12675258 -89197911 + AluSx SINE Alu 1 142 -170 2053 118 3 10 chr13 12675258 12675564 -89197605 + AluSx SINE Alu 1 304 -8 1894 129 0 31 chr13 12675564 12675742 -89197427 + AluSx SINE Alu 142 307 -5 3547 167 27 6 chr13 12675742 12676378 -89196791 + L1MC1 LINE L1 5685 6333 0 802 169 6 25 chr13 12676394 12676554 -89196615 + FRAM SINE Alu 20 176 0 209 0 97 0 chr13 12676558 12676589 -89196580 + A-rich Low_complexity Low_complexity 5 38 0 26 0 0 0 chr13 12676589 12676615 -89196554 + AT_rich Low_complexity Low_complexity 1 26 0 256 196 18 36 chr13 12677668 12677724 -89195445 + L2 LINE L2 3217 3271 -1 241 143 0 0 chr13 12677838 12677873 -89195296 + AluJb SINE Alu 1 35 -265 1603 174 0 7 chr13 12677873 12678155 -89195014 + AluJb SINE Alu 13 292 -20 3170 136 75 84 chr13 12678916 12679697 -89193472 + LTR1 LTR ERV1 11 784 -1 535 258 104 28 chr13 12680147 12680329 -89192840 + MLT1J LTR MaLR 7 202 -309 359 280 120 7 chr13 12680357 12680507 -89192662 + MLT1J LTR MaLR 243 409 -102 2588 16 0 10 chr13 12680510 12680815 -89192354 - AluY SINE Alu -9 302 1 268 191 0 29 chr13 12680829 12680897 -89192272 - L1MC2 LINE L1 -9 6335 6270 2119 93 0 40 chr13 12682466 12682787 -89190382 + AluSx SINE Alu 1 308 -4 1335 139 183 109 chr13 12683549 12683656 -89189513 + MLT2C2 LTR ERVL 1 99 -365 1475 127 120 8 chr13 12683656 12683915 -89189254 + AluSg SINE Alu 1 288 -22 1335 139 183 109 chr13 12683915 12684063 -89189106 + MLT2C2 LTR ERVL 99 235 -229 2035 138 0 0 chr13 12684063 12684367 -89188802 + AluSx SINE Alu 1 304 -8 1335 139 183 109 chr13 12684367 12684542 -89188627 + MLT2C2 LTR ERVL 235 464 0 2285 84 0 13 chr13 12684574 12684885 -89188284 + AluSc SINE Alu 1 307 -2 602 344 9 0 chr13 12685047 12685271 -89187898 - MARNA DNA Mariner -318 268 43 445 269 151 51 chr13 12686008 12686320 -89186849 - L1ME4a LINE L1 0 6121 5779 1445 184 0 67 chr13 12686412 12686541 -89186628 + AluJo SINE Alu 1 137 -175 2248 99 0 0 chr13 12686541 12686834 -89186335 - AluSx SINE Alu -19 293 1 1445 184 0 67 chr13 12686834 12687020 -89186149 + AluJo SINE Alu 137 295 -17 808 176 28 33 chr13 12687154 12687336 -89185833 + AluJb SINE Alu 129 309 -3 1830 120 48 42 chr13 12687721 12687853 -89185316 + MER2 DNA MER2_type 1 131 -214 2103 113 0 0 chr13 12687853 12688145 -89185024 - AluSx SINE Alu -20 292 1 1830 120 48 42 chr13 12688145 12688345 -89184824 + MER2 DNA MER2_type 131 335 -10 855 171 63 0 chr13 12688409 12688567 -89184602 + FRAM SINE Alu 1 168 -8 204 283 240 20 chr13 12689671 12689783 -89183386 - L2 LINE L2 -994 2320 2234 846 219 27 16 chr13 12689783 12689895 -89183274 - MER5A DNA MER1_type 0 189 73 2488 36 3 7 chr13 12689895 12690199 -89182970 - AluY SINE Alu -8 303 1 846 219 27 16 chr13 12690199 12690273 -89182896 - MER5A DNA MER1_type -116 73 1 204 283 240 20 chr13 12690273 12690556 -89182613 - L2 LINE L2 -1080 2234 1838 1805 89 12 8 chr13 12690670 12690917 -89182252 + AluSq SINE Alu 1 248 -65 1731 140 17 7 chr13 12691130 12691422 -89181747 + AluJb SINE Alu 1 295 -17 508 340 13 0 chr13 12691684 12691840 -89181329 - L2 LINE L2 -372 2942 2785 322 182 461 13 chr13 12691840 12691994 -89181175 - L2 LINE L2 -1084 2230 2008 354 342 86 16 chr13 12691996 12692183 -89180986 + L1MC/D LINE L1 5426 5625 -2183 216 306 241 0 chr13 12692790 12692898 -89180271 - L2 LINE L2 -2 3270 3137 271 328 34 25 chr13 12693040 12693159 -89180010 - L2 LINE L2 -219 3053 2934 474 132 44 88 chr13 12693267 12693381 -89179788 + L1MA10 LINE L1 6226 6334 0 347 358 30 6 chr13 12693480 12693654 -89179515 + MIR SINE MIR 16 196 -66 264 253 77 11 chr13 12693968 12694059 -89179110 - MIR SINE MIR -52 210 114 870 193 13 0 chr13 12694402 12694552 -89178617 - FRAM SINE Alu -12 154 3 308 142 37 0 chr13 12694756 12694817 -89178352 + MLT1A1 LTR MaLR 1 63 -365 2756 202 41 41 chr13 12694818 12695396 -89177773 + L1MD1 LINE L1 5514 6094 -148 1746 135 25 0 chr13 12695396 12695677 -89177492 - AluSx SINE Alu -21 291 4 2756 202 41 41 chr13 12695677 12695827 -89177342 + L1MD1 LINE L1 6093 6242 0 425 223 77 15 chr13 12695877 12696007 -89177162 + MLT1A1 LTR MaLR 228 365 0 1954 113 18 0 chr13 12696205 12696488 -89176681 + AluSg SINE Alu 3 290 -20 2153 94 0 3 chr13 12697431 12697730 -89175439 + AluY SINE Alu 1 298 -13 903 79 43 22 chr13 12698482 12698621 -89174548 + AluSp SINE Alu 1 142 -171 1554 133 42 15 chr13 12698626 12698890 -89174279 + AluSp SINE Alu 13 283 -30 1592 168 0 67 chr13 12699455 12699584 -89173585 + AluJo SINE Alu 1 137 -175 2248 99 0 0 chr13 12699584 12699877 -89173292 - AluSx SINE Alu -19 293 1 1592 168 0 67 chr13 12699877 12700063 -89173106 + AluJo SINE Alu 137 295 -17 2037 112 0 3 chr13 12700358 12700678 -89172491 - AluSx SINE Alu 0 312 1 222 290 97 0 chr13 12700762 12700855 -89172314 + MIR SINE MIR 124 225 -37 1019 183 86 81 chr13 12700991 12701157 -89172012 + MER58D DNA MER1_type 1 165 -2255 1681 153 0 81 chr13 12701157 12701490 -89171679 - AluJo SINE Alu -4 308 3 1019 183 86 81 chr13 12701490 12701706 -89171463 + MER58D DNA MER1_type 165 385 -1 1573 187 127 28 chr13 12703207 12703820 -89169349 - LTR48 LTR ERV1 0 787 4 232 237 145 13 chr13 12703926 12704002 -89169167 + L2 LINE L2 3186 3271 -1 661 266 91 37 chr13 12704032 12704268 -89168901 + MIR SINE MIR 3 252 -10 1640 207 28 14 chr13 12704841 12705203 -89167966 - MLT1A2 LTR MaLR -1 373 7 844 261 43 35 chr13 12705282 12705539 -89167630 + MIR SINE MIR 2 260 -2 426 285 32 36 chr13 12705627 12705827 -89167342 + MIR SINE MIR 20 218 -44 2377 157 5 5 chr13 12706385 12706774 -89166395 - MLT1B LTR MaLR -1 389 1 240 232 54 0 chr13 12707453 12707509 -89165660 - L2 LINE L2 0 3313 3255 1450 167 48 44 chr13 12708344 12708638 -89164531 - AluJb SINE Alu -17 295 1 239 236 36 0 chr13 12708978 12709033 -89164136 + L1MC4 LINE L1 7606 7662 -380 2292 158 68 47 chr13 12709088 12709228 -89163941 + L1MB8 LINE L1 5425 5561 -617 2390 84 0 0 chr13 12709228 12709539 -89163630 + AluY SINE Alu 1 311 0 2292 158 68 47 chr13 12709539 12709910 -89163259 + L1MB8 LINE L1 5561 5947 -231 2179 93 7 10 chr13 12709942 12710243 -89162926 - AluSq SINE Alu -13 300 1 2257 123 50 17 chr13 12710245 12710604 -89162565 + LTR45B LTR ERV1 21 391 -98 1882 161 83 22 chr13 12710704 12711065 -89162104 + L1MC1 LINE L1 5943 6325 -8 608 179 6 96 chr13 12711069 12711225 -89161944 + FLAM_A SINE Alu 1 142 0 1262 163 12 33 chr13 12711237 12711343 -89161826 + MLT1D LTR MaLR 271 378 -127 2045 141 0 0 chr13 12711343 12711655 -89161514 - AluSx SINE Alu 0 312 1 1262 163 12 33 chr13 12711655 12711788 -89161381 + MLT1D LTR MaLR 378 505 0 540 225 29 7 chr13 12711796 12711934 -89161235 + L1MD3 LINE L1 7855 7995 0 585 235 53 15 chr13 12711967 12712193 -89160976 - LTR45B LTR ERV1 0 619 180 2029 118 0 20 chr13 12712194 12712498 -89160671 - AluSx SINE Alu -14 298 1 997 102 0 15 chr13 12712498 12712635 -89160534 - AluSq/x SINE Alu -178 135 1 1082 139 92 0 chr13 12712636 12712809 -89160360 - LTR45B LTR ERV1 -298 191 3 376 218 40 50 chr13 12713177 12713278 -89159891 + L1MC4 LINE L1 6604 6703 -1339 350 192 0 91 chr13 12713292 12713391 -89159778 - L1MC4 LINE L1 -1339 6703 6614 350 192 0 91 chr13 12713360 12713459 -89159710 - L1MC4 LINE L1 -1339 6703 6614 350 192 0 91 chr13 12713428 12713527 -89159642 - L1MC4 LINE L1 -1339 6703 6614 350 192 0 91 chr13 12713530 12713663 -89159506 - L1MC4 LINE L1 -1339 6703 6614 328 250 22 43 chr13 12713600 12713692 -89159477 + L1MC4 LINE L1 6614 6703 -1339 * 183 80 0 0 chr13 12713692 12713717 -89159452 + (TG)n Simple_repeat Simple_repeat 2 26 0 1727 167 3 0 chr13 12713787 12714089 -89159080 + AluJo SINE Alu 2 304 0 279 0 0 0 chr13 12714641 12714672 -89158497 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2305 72 0 0 chr13 12714674 12714966 -89158203 - AluY SINE Alu -19 292 1 2074 113 0 3 chr13 12714967 12715267 -89157902 - AluSx SINE Alu -13 299 1 1911 95 91 0 chr13 12715850 12716124 -89157045 + AluSx SINE Alu 1 299 -13 827 263 20 18 chr13 12716131 12716376 -89156793 + MIR SINE MIR 18 262 0 2059 94 3 20 chr13 12716422 12716721 -89156448 - AluSx SINE Alu -18 294 1 312 301 0 0 chr13 12716792 12716865 -89156304 - MIR3 SINE MIR -48 160 88 759 118 0 0 chr13 12717907 12718009 -89155160 - FLAM_C SINE Alu -40 103 2 1595 159 0 95 chr13 12718019 12718346 -89154823 - AluJo SINE Alu -4 298 3 25 0 0 0 chr13 12718349 12718374 -89154795 + AT_rich Low_complexity Low_complexity 1 25 0 849 175 25 0 chr13 12718382 12718542 -89154627 - AluJb SINE Alu -20 292 129 274 258 116 50 chr13 12718838 12719036 -89154133 + L2 LINE L2 2190 2400 -914 944 122 0 34 chr13 12719199 12719347 -89153822 + FRAM SINE Alu 1 142 -34 267 79 0 0 chr13 12719347 12719385 -89153784 + (CA)n Simple_repeat Simple_repeat 2 39 0 1173 141 0 0 chr13 12719548 12719782 -89153387 + AluSg/x SINE Alu 133 366 0 1609 185 0 4 chr13 12720671 12720983 -89152186 - AluJo SINE Alu 0 312 2 291 71 0 0 chr13 12721276 12721318 -89151851 + (TG)n Simple_repeat Simple_repeat 1 42 0 1707 173 7 3 chr13 12721372 12721667 -89151502 + AluJo SINE Alu 1 296 -16 1510 260 60 75 chr13 12721680 12722125 -89151044 + L1MC4 LINE L1 7316 7766 -276 724 163 8 8 chr13 12722125 12722248 -89150921 + FLAM_A SINE Alu 2 124 -9 1510 260 60 75 chr13 12722248 12722310 -89150859 + L1MC4 LINE L1 7766 7827 -215 1892 115 189 19 chr13 12722310 12722631 -89150538 + MSTA LTR MaLR 1 393 -35 1632 105 0 0 chr13 12722631 12722850 -89150319 - AluSx SINE Alu -89 223 5 1892 115 189 19 chr13 12722850 12722893 -89150276 + MSTA LTR MaLR 393 427 -1 1510 260 60 75 chr13 12722893 12723122 -89150047 + L1MC4 LINE L1 7827 8042 0 525 17 0 0 chr13 12723739 12723797 -89149372 + U6 snRNA snRNA 7 64 -43 2554 162 15 34 chr13 12723828 12723991 -89149178 + L1PA16 LINE L1 5669 5834 -332 1846 120 33 40 chr13 12723991 12724290 -89148879 - AluSx SINE Alu -15 297 1 2554 162 15 34 chr13 12724290 12724608 -89148561 + L1PA16 LINE L1 5834 6145 -21 287 305 158 45 chr13 12725090 12725336 -89147833 - L2 LINE L2 0 3272 2999 185 282 14 42 chr13 12725352 12725423 -89147746 + MIR3 SINE MIR 6 74 -134 287 263 75 0 chr13 12725423 12725503 -89147666 + MER96 DNA MER1_type? 1 86 -89 1333 219 103 0 chr13 12726122 12726423 -89146746 + MER7A DNA MER2_type 14 343 -3 2407 59 13 0 chr13 12726454 12726757 -89146412 - AluY SINE Alu -4 307 1 198 316 112 51 chr13 12726792 12727184 -89145985 + L2 LINE L2 2261 2676 -638 2220 116 3 0 chr13 12727416 12727710 -89145459 - AluSx SINE Alu -16 296 2 857 101 0 0 chr13 12728049 12728168 -89145001 + AluSg/x SINE Alu 191 309 0 260 271 188 0 chr13 12728188 12728273 -89144896 - MIR SINE MIR -113 149 49 21 36 0 0 chr13 12728298 12728326 -89144843 + AT_rich Low_complexity Low_complexity 1 28 0 1621 96 36 0 chr13 12728536 12728756 -89144413 - AluSg/x SINE Alu 0 312 85 210 102 34 51 chr13 12728804 12728863 -89144306 + (GTGTG)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr13 12728965 12728987 -89144182 + AT_rich Low_complexity Low_complexity 1 22 0 217 298 0 18 chr13 12729077 12729134 -89144035 + polypyrimidine Low_complexity Low_complexity 3 58 0 456 127 14 0 chr13 12729151 12729222 -89143947 - AluJ/FLAM SINE Alu -238 74 3 391 267 142 33 chr13 12730500 12730740 -89142429 + MLT1L LTR MaLR 127 392 -223 225 301 126 54 chr13 12731116 12731355 -89141814 - L2 LINE L2 -2 3270 3015 2848 10 0 0 chr13 12731419 12731723 -89141446 + AluYa5 SINE Alu 1 304 -7 189 290 100 0 chr13 12731764 12731864 -89141305 - L2 LINE L2 -785 2529 2420 1220 218 14 18 chr13 12731885 12732165 -89141004 + MLT1H LTR MaLR 13 291 -258 295 178 92 0 chr13 12732288 12732363 -89140806 + MLT1H LTR MaLR 418 549 0 2488 76 0 3 chr13 12732918 12733232 -89139937 - AluSq SINE Alu 0 313 1 216 0 0 0 chr13 12734909 12734933 -89138236 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1866 92 64 35 chr13 12734984 12735145 -89138024 - AluSq SINE Alu -23 290 116 195 42 0 0 chr13 12735145 12735169 -89138000 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1866 92 64 35 chr13 12735169 12735289 -89137880 - AluSq SINE Alu -197 116 1 270 0 0 0 chr13 12736547 12736577 -89136592 + (T)n Simple_repeat Simple_repeat 1 30 0 206 372 18 30 chr13 12737377 12737541 -89135628 + L2 LINE L2 2897 3058 -214 184 323 55 16 chr13 12739969 12740096 -89133073 + L2 LINE L2 3172 3303 -10 3563 70 2 5 chr13 12740159 12740604 -89132565 - MLT2A1 LTR ERVL 0 444 1 2098 147 0 13 chr13 12740683 12740995 -89132174 - AluJb SINE Alu -4 308 1 190 211 88 0 chr13 12741717 12741774 -89131395 + MIR SINE MIR 122 183 -79 661 198 0 0 chr13 12741839 12741960 -89131209 + FLAM_A SINE Alu 20 140 -2 4013 129 80 49 chr13 12742246 12743007 -89130162 + LTR1 LTR ERV1 1 785 0 289 182 0 45 chr13 12743045 12743111 -89130058 - MIR SINE MIR -61 147 85 219 218 13 26 chr13 12744239 12744317 -89128852 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 1601 200 54 15 chr13 12744339 12744718 -89128451 - MLT2D LTR ERVL -35 485 1 535 283 17 11 chr13 12744728 12744908 -89128261 - MIR SINE MIR -54 208 28 468 193 43 43 chr13 12745020 12745160 -89128009 - LTR67 LTR ERVL -1 556 417 1619 204 92 54 chr13 12745470 12745915 -89127254 + MLT1C LTR MaLR 6 467 0 2338 70 3 3 chr13 12746314 12746600 -89126569 - AluSx SINE Alu -23 289 4 288 262 0 0 chr13 12747319 12747380 -89125789 + MIR SINE MIR 88 148 -60 2187 94 3 20 chr13 12747463 12747762 -89125407 + AluSx SINE Alu 1 294 -18 753 254 14 14 chr13 12747808 12748017 -89125152 - MIR SINE MIR 0 262 54 2004 98 91 0 chr13 12748060 12748334 -89124835 - AluSx SINE Alu -13 299 1 2202 113 0 3 chr13 12748917 12749217 -89123952 + AluSx SINE Alu 1 299 -13 2359 84 0 0 chr13 12749218 12749516 -89123653 + AluY SINE Alu 1 298 -13 963 79 43 22 chr13 12750268 12750407 -89122762 + AluSp SINE Alu 1 142 -171 1924 109 39 14 chr13 12750412 12750696 -89122473 + AluSp SINE Alu 13 303 -10 209 278 290 11 chr13 12751861 12752037 -89121132 + MIR SINE MIR 22 246 -16 21 0 0 0 chr13 12753480 12753501 -89119668 + GC_rich Low_complexity Low_complexity 1 21 0 256 281 125 8 chr13 12754090 12754218 -89118951 + L1ME LINE L1 5686 5828 -334 2178 132 64 13 chr13 12754499 12754892 -89118277 - L1MC3 LINE L1 -2 7783 7371 219 300 113 52 chr13 12755151 12755297 -89117872 + L2 LINE L2 944 1110 -2204 2250 96 0 10 chr13 12755297 12755598 -89117571 - AluSq SINE Alu -15 298 1 219 300 113 52 chr13 12755598 12755681 -89117488 + L2 LINE L2 1110 1187 -2127 601 252 155 0 chr13 12755775 12755981 -89117188 + MER102b DNA MER1_type 103 340 -1 202 296 45 34 chr13 12755985 12756073 -89117096 + L2 LINE L2 1217 1305 -2009 1309 146 108 54 chr13 12756073 12756530 -89116639 - LTR64 LTR ERVK -13 545 1 2103 110 25 0 chr13 12756617 12756899 -89116270 - AluSx SINE Alu -23 289 1 534 322 167 11 chr13 12757173 12757639 -89115530 + L2 LINE L2 1816 2354 -960 367 137 0 0 chr13 12757664 12757715 -89115454 - MER66B LTR ERV1 -141 345 295 412 148 123 0 chr13 12757798 12757879 -89115290 - LTR64 LTR ERVK -13 545 455 1747 171 7 16 chr13 12757938 12758242 -89114927 - AluJo SINE Alu -11 301 1 1852 174 7 0 chr13 12758262 12758566 -89114603 + AluJb SINE Alu 2 307 -5 321 68 0 0 chr13 12758905 12758949 -89114220 + (CA)n Simple_repeat Simple_repeat 2 45 0 255 270 16 0 chr13 12758951 12759014 -89114155 - HAL1 LINE L1 -2441 66 3 694 190 0 0 chr13 12759381 12759497 -89113672 - FLAM_C SINE Alu -17 116 1 976 220 20 12 chr13 12759499 12759749 -89113420 - L1ME3 LINE L1 -187 5975 5724 819 206 0 0 chr13 12759750 12759891 -89113278 - FRAM SINE Alu -36 140 1 293 244 0 73 chr13 12759891 12759922 -89113247 - L1ME3 LINE L1 -524 5640 5608 2097 132 11 36 chr13 12759922 12760286 -89112883 - THE1A LTR MaLR 0 355 1 293 244 0 73 chr13 12760286 12760336 -89112833 - L1ME3 LINE L1 -556 5608 5565 244 294 79 40 chr13 12760581 12760707 -89112462 - L2 LINE L2 -4 3309 3179 2116 129 20 0 chr13 12761532 12761834 -89111335 - AluSx SINE Alu -4 308 1 26 0 0 0 chr13 12761891 12761917 -89111252 + AT_rich Low_complexity Low_complexity 1 26 0 274 294 94 39 chr13 12762591 12762771 -89110398 + MER117 DNA MER1_type 8 197 0 410 212 44 53 chr13 12763190 12763303 -89109866 + Charlie1 DNA MER1_type 9 120 -2641 736 203 0 0 chr13 12763320 12763453 -89109716 - FLAM_A SINE Alu 0 133 1 3355 172 40 149 chr13 12763456 12764093 -89109076 + Charlie1 DNA MER1_type 1638 2072 -689 2457 82 3 0 chr13 12764093 12764397 -89108772 + AluSp SINE Alu 1 305 -8 3355 172 40 149 chr13 12764397 12765018 -89108151 + Charlie1 DNA MER1_type 2072 2759 -2 1241 169 125 47 chr13 12766029 12766266 -89106903 + MER2 DNA MER2_type 1 271 -73 2221 115 0 16 chr13 12766266 12766578 -89106591 - AluSq SINE Alu -6 307 1 1241 169 125 47 chr13 12766578 12766659 -89106510 + MER2 DNA MER2_type 271 344 0 275 216 165 41 chr13 12766849 12766946 -89106223 + L2 LINE L2 3204 3312 -1 790 268 149 29 chr13 12767157 12767733 -89105436 - L2 LINE L2 0 3313 2671 4517 229 86 35 chr13 12767748 12767818 -89105351 + L1MB8 LINE L1 2504 2569 -3577 2182 124 0 0 chr13 12767818 12768116 -89105053 - AluSx SINE Alu -7 305 8 4517 229 86 35 chr13 12768116 12768495 -89104674 + L1MB8 LINE L1 2569 2927 -3219 1465 208 52 0 chr13 12768495 12768783 -89104386 + AluJb SINE Alu 1 303 -9 4517 229 86 35 chr13 12768783 12769228 -89103941 + L1MB8 LINE L1 2927 3348 -2798 1708 164 31 11 chr13 12769228 12769514 -89103655 + AluJb SINE Alu 8 299 -13 4517 229 86 35 chr13 12769514 12770229 -89102940 + L1MB8 LINE L1 3348 4198 -1948 3019 157 113 36 chr13 12770230 12770866 -89102303 + LTR8 LTR ERV1 2 686 -5 3906 193 73 28 chr13 12770881 12770932 -89102237 + L1MB8 LINE L1 4201 4248 -1936 2362 89 0 32 chr13 12770932 12771248 -89101921 + AluY SINE Alu 1 306 -5 3906 193 73 28 chr13 12771248 12771369 -89101800 + L1MB8 LINE L1 4248 4362 -1822 2045 144 0 16 chr13 12771369 12771681 -89101488 + AluSg SINE Alu 1 307 -3 3906 193 73 28 chr13 12771681 12771942 -89101227 + L1MB8 LINE L1 4362 4610 -1574 1769 169 17 3 chr13 12771942 12772237 -89100932 - AluJb SINE Alu -13 299 1 3906 193 73 28 chr13 12772237 12773468 -89099701 + L1MB8 LINE L1 4610 5925 -259 953 202 85 9 chr13 12773599 12773822 -89099347 + L1MB8 LINE L1 5938 6177 -1 21 0 0 0 chr13 12774550 12774571 -89098598 + AT_rich Low_complexity Low_complexity 1 21 0 710 213 7 0 chr13 12774577 12774727 -89098442 - L1MD2 LINE L1 -14 6345 6195 1223 201 98 56 chr13 12774729 12775138 -89098031 - L1MD2 LINE L1 -216 6143 5718 2147 106 28 0 chr13 12775430 12775713 -89097456 + AluSx SINE Alu 7 297 -15 2368 101 0 0 chr13 12775714 12776011 -89097158 + AluSq SINE Alu 1 297 -16 1473 111 19 0 chr13 12776642 12776850 -89096319 - AluSg/x SINE Alu -18 294 83 235 245 0 19 chr13 12777247 12777300 -89095869 + FRAM/FAM SINE Alu 1 44 -122 2211 180 72 40 chr13 12777325 12777797 -89095372 + LTR22 LTR ERVK 1 487 -22 290 183 0 0 chr13 12777803 12777863 -89095306 + Alu SINE Alu 242 301 -1 1434 148 113 14 chr13 12777864 12778148 -89095021 - L1MB5 LINE L1 -40 6134 5823 267 356 0 0 chr13 12778220 12778338 -89094831 - MARNA DNA Mariner -43 543 426 1991 147 31 8 chr13 12778387 12778747 -89094422 - L1MB3 LINE L1 0 6183 5816 * 5736 123 13 13 chr13 12778741 12779427 -89093742 - L1PA15 LINE L1 -2 6163 5478 2076 151 3 0 chr13 12779427 12779738 -89093431 - AluSx SINE Alu 0 312 1 5736 123 13 13 chr13 12779738 12780069 -89093100 - L1PA15 LINE L1 -687 5478 5148 348 43 0 0 chr13 12780069 12780115 -89093054 + (TTAG)n Simple_repeat Simple_repeat 3 48 0 2136 99 10 31 chr13 12780117 12780411 -89092758 - AluSq SINE Alu -25 288 1 5736 123 13 13 chr13 12780411 12781170 -89091999 - L1PA15 LINE L1 -1017 5148 4395 494 73 0 0 chr13 12781179 12781247 -89091922 - AluJb SINE Alu -7 305 238 5341 94 24 65 chr13 12781247 12782108 -89091061 - LTR12 LTR ERV1 0 826 1 4945 112 6 10 chr13 12782187 12783121 -89090048 - Harlequin LTR ERV1 0 8399 504 2396 174 130 70 chr13 12783115 12783946 -89089223 - Harlequin LTR ERV1 -5176 1720 840 * 37925 82 7 9 chr13 12783947 12787640 -89085529 - Harlequin LTR ERV1 -3455 4944 1265 333 68 0 0 chr13 12787640 12787684 -89085485 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 37925 82 7 9 chr13 12787684 12788946 -89084223 - Harlequin LTR ERV1 -7134 1265 1 5095 95 84 28 chr13 12788946 12789728 -89083441 - LTR12 LTR ERV1 0 826 1 840 196 115 48 chr13 12789806 12790076 -89083093 - pTR5 LTR ERV1 -1410 1028 741 1509 138 36 5 chr13 12790118 12790342 -89082827 - AluJb SINE Alu -81 231 1 1700 159 22 149 chr13 12790353 12790759 -89082410 - L1MB3 LINE L1 -491 5683 5227 1699 167 7 14 chr13 12790759 12791040 -89082129 + AluJb SINE Alu 13 291 -21 2011 142 27 0 chr13 12791047 12791343 -89081826 + AluY SINE Alu 1 304 -7 1700 159 22 149 chr13 12791343 12791729 -89081440 - L1MB3 LINE L1 -953 5221 5154 2145 128 3 0 chr13 12791729 12792027 -89081142 - AluSx SINE Alu -11 301 3 1700 159 22 149 chr13 12792027 12792122 -89081047 - L1MB3 LINE L1 -1020 5154 5049 675 181 51 0 chr13 12792122 12792260 -89080909 - FAM SINE Alu -23 162 18 2597 203 45 32 chr13 12792278 12792789 -89080380 - L1M4c LINE L1 -4167 2479 1859 1595 183 35 7 chr13 12792789 12793074 -89080095 + AluJb SINE Alu 1 293 -19 2597 203 45 32 chr13 12793074 12793413 -89079756 - L1M4c LINE L1 -4787 1859 1526 1246 132 0 0 chr13 12793417 12793591 -89079578 - AluSg/x SINE Alu -5 305 132 1882 139 44 17 chr13 12793591 12793912 -89079257 - AluSg SINE Alu 0 310 1 1332 282 42 46 chr13 12793915 12793931 -89079238 - L1M4c LINE L1 -5927 615 600 2621 131 11 47 chr13 12793931 12794375 -89078794 - MSTC LTR MaLR 0 428 1 1332 282 42 46 chr13 12794375 12794971 -89078198 - L1M4c LINE L1 -5942 600 5 238 342 45 0 chr13 12795070 12795181 -89077988 + L1ME LINE L1 5597 5712 -458 2082 104 54 0 chr13 12795334 12795612 -89077557 - AluSx SINE Alu -19 293 1 348 272 87 0 chr13 12796024 12796149 -89077020 + MER5B DNA MER1_type 4 129 -49 2132 120 0 10 chr13 12796150 12796450 -89076719 - AluSq SINE Alu -16 297 1 626 200 51 40 chr13 12796450 12796625 -89076544 - L1MC5 LINE L1 -439 7522 7346 281 269 0 0 chr13 12797307 12797374 -89075795 - LTR33 LTR ERVL 0 521 455 1081 121 0 0 chr13 12797402 12797551 -89075618 + FRAM SINE Alu 19 167 -9 763 261 159 13 chr13 12797556 12797909 -89075260 - LTR33 LTR ERVL -69 452 3 2351 288 52 36 chr13 12798434 12798835 -89074334 - ERVL LTR ERVL -724 5040 4647 189 0 0 0 chr13 12798835 12798856 -89074313 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 2206 104 0 0 chr13 12798856 12799134 -89074035 - AluSg SINE Alu -32 278 1 2351 288 52 36 chr13 12799134 12799686 -89073483 - ERVL LTR ERVL -1116 4648 4070 1410 186 107 51 chr13 12799686 12800041 -89073128 + MLT1B LTR MaLR 1 375 -15 877 318 74 27 chr13 12800086 12800599 -89072570 - ERVL LTR ERVL -1654 4000 3464 1255 180 72 73 chr13 12800660 12801088 -89072081 + MER39 LTR ERV1 196 684 -23 1674 255 91 68 chr13 12801286 12801580 -89071589 - ERVL LTR ERVL -2511 3253 2967 1915 143 7 16 chr13 12801580 12801887 -89071282 - AluJo SINE Alu -8 304 1 1674 255 91 68 chr13 12801887 12802295 -89070874 - ERVL LTR ERVL -2797 2967 2535 300 23 116 0 chr13 12802372 12802415 -89070754 - MLT2B3 LTR ERVL 0 520 473 2382 188 66 19 chr13 12802457 12802900 -89070269 - MLT2B3 LTR ERVL -34 520 51 2162 112 7 7 chr13 12802900 12803205 -89069964 - AluSx SINE Alu -7 305 1 2382 188 66 19 chr13 12803205 12803246 -89069923 - MLT2B3 LTR ERVL -503 51 13 1351 174 125 21 chr13 12803255 12803536 -89069633 - AluSg SINE Alu 0 310 1 1147 293 107 30 chr13 12803702 12804497 -89068672 + HAL1 LINE L1 1013 1868 -639 1908 129 43 17 chr13 12804498 12804800 -89068369 + AluSx SINE Alu 1 310 -2 1820 145 0 17 chr13 12804851 12805140 -89068029 - AluJo SINE Alu -14 298 15 1588 141 0 27 chr13 12805146 12805402 -89067767 + AluJb SINE Alu 64 312 0 370 303 46 17 chr13 12806567 12806742 -89066427 - L3b LINE CR1 -301 1282 1103 1093 245 117 63 chr13 12806986 12807160 -89066009 + MLT1J LTR MaLR 24 187 -324 1610 192 0 10 chr13 12807160 12807457 -89065712 - AluJo SINE Alu -7 305 12 1093 245 117 63 chr13 12807457 12807710 -89065459 + MLT1J LTR MaLR 187 474 -37 652 248 72 36 chr13 12807911 12808133 -89065036 - MIR SINE MIR -32 230 1 1738 128 15 107 chr13 12808420 12808756 -89064413 - AluJb SINE Alu -7 305 1 1623 182 3 36 chr13 12809146 12809260 -89063909 + AluJb SINE Alu 1 117 -195 2335 92 60 17 chr13 12809260 12809609 -89063560 - THE1B LTR MaLR 0 364 1 1623 182 3 36 chr13 12809609 12809802 -89063367 + AluJb SINE Alu 117 298 -14 288 0 0 0 chr13 12809802 12809834 -89063335 + (TA)n Simple_repeat Simple_repeat 2 33 0 916 143 0 0 chr13 12809890 12810023 -89063146 + AluSq/x SINE Alu 1 133 -180 2316 101 3 0 chr13 12810737 12811043 -89062126 + AluSc SINE Alu 1 307 -2 586 260 19 0 chr13 12811200 12811354 -89061815 - L1M4 LINE L1 -2022 4124 3968 661 308 53 3 chr13 12811382 12811700 -89061469 + L1ME4a LINE L1 5484 5817 -304 2187 122 3 0 chr13 12811712 12812007 -89061162 + AluSx SINE Alu 1 296 -16 2309 81 0 3 chr13 12812007 12812321 -89060848 + AluY SINE Alu 1 313 0 480 179 142 8 chr13 12812719 12812853 -89060316 + L1ME4a LINE L1 5955 6106 -15 819 176 7 0 chr13 12813254 12813396 -89059773 - FLAM_C SINE Alu 0 143 1 366 306 9 0 chr13 12813577 12813688 -89059481 + L2 LINE L2 3158 3269 -3 2295 114 0 10 chr13 12813895 12814203 -89058966 + AluSx SINE Alu 1 305 -7 547 246 112 17 chr13 12814341 12814573 -89058596 + L1MC5 LINE L1 7605 7858 -103 428 191 27 82 chr13 12814564 12814664 -89058505 + L1ME2 LINE L1 6010 6114 -50 * 1932 172 3 0 chr13 12814664 12814967 -89058202 - AluSx SINE Alu -8 304 1 2169 132 3 6 chr13 12814967 12815278 -89057891 - AluSx SINE Alu -2 310 1 428 191 27 82 chr13 12815278 12815323 -89057846 + L1ME2 LINE L1 6112 6148 -16 209 224 0 20 chr13 12815409 12815458 -89057711 + A-rich Low_complexity Low_complexity 3 50 0 2082 114 0 72 chr13 12816001 12816179 -89056990 - AluSx SINE Alu -3 309 165 1761 101 136 19 chr13 12816179 12816437 -89056732 - AluSg1 SINE Alu -21 288 1 2082 114 0 72 chr13 12816437 12816591 -89056578 - AluSx SINE Alu -147 165 1 21 0 0 0 chr13 12816600 12816621 -89056548 + AT_rich Low_complexity Low_complexity 1 21 0 1099 175 15 5 chr13 12816770 12816970 -89056199 - AluJo SINE Alu -110 202 1 299 224 165 12 chr13 12817155 12817240 -89055929 + L2 LINE L2 3182 3279 -34 2319 131 0 0 chr13 12817245 12817557 -89055612 - AluSx SINE Alu 0 312 1 2025 144 7 0 chr13 12817575 12817873 -89055296 - AluSx SINE Alu -12 300 1 192 294 29 0 chr13 12818073 12818141 -89055028 - L2 LINE L2 -226 3046 2977 499 197 47 39 chr13 12818158 12818285 -89054884 + MER94 DNA DNA 6 133 -1 3012 171 38 77 chr13 12819329 12819698 -89053471 - L1MB4 LINE L1 0 6180 5798 586 197 128 0 chr13 12819698 12819815 -89053354 - FLAM_A SINE Alu -1 132 1 3012 171 38 77 chr13 12819815 12820185 -89052984 - L1MB4 LINE L1 -382 5798 5472 189 0 0 0 chr13 12820185 12820206 -89052963 + (TA)n Simple_repeat Simple_repeat 1 21 0 3012 171 38 77 chr13 12820206 12820260 -89052909 - L1MB4 LINE L1 -708 5472 5417 308 306 48 8 chr13 12820804 12820928 -89052241 - L1ME4a LINE L1 -1 6120 5992 1793 143 38 3 chr13 12821062 12821355 -89051814 - AluJb SINE Alu -9 303 1 277 141 110 17 chr13 12821364 12821448 -89051721 - L1ME4a LINE L1 -513 5820 5730 1448 157 4 4 chr13 12821573 12821809 -89051360 + MER46A DNA MER2_type 1 236 0 2268 154 19 58 chr13 12821963 12822025 -89051144 - L1MB3 LINE L1 -24 6159 6096 2366 94 3 0 chr13 12822025 12822323 -89050846 - AluSp SINE Alu -14 299 1 2268 154 19 58 chr13 12822323 12822726 -89050443 - L1MB3 LINE L1 -87 6096 5712 276 292 80 0 chr13 12822857 12822970 -89050199 - MIR SINE MIR -57 205 84 2384 103 0 3 chr13 12822974 12823286 -89049883 + AluSx SINE Alu 1 311 -1 661 198 0 0 chr13 12823928 12824049 -89049120 - FLAM_A SINE Alu -2 140 20 190 211 88 0 chr13 12824114 12824171 -89048998 - MIR SINE MIR -79 183 122 2054 150 0 13 chr13 12824893 12825200 -89047969 + AluJb SINE Alu 1 303 -9 2213 97 7 3 chr13 12826267 12826556 -89046613 - AluSg SINE Alu -20 290 1 771 58 10 19 chr13 12827470 12827573 -89045596 + AluSg/x SINE Alu 67 168 -144 264 167 0 0 chr13 12827588 12827636 -89045533 + A-rich Low_complexity Low_complexity 1 48 0 311 318 164 25 chr13 12827787 12827988 -89045181 + MIR SINE MIR 21 249 -13 2477 58 0 13 chr13 12828036 12828347 -89044822 - AluY SINE Alu -4 307 1 234 204 0 0 chr13 12828448 12828492 -89044677 - MIR SINE MIR -109 153 110 597 284 97 23 chr13 12828604 12828780 -89044389 + MIR SINE MIR 3 191 -71 1896 118 21 21 chr13 12829510 12829523 -89043646 - AluSx SINE Alu -17 295 283 180 0 0 0 chr13 12829523 12829543 -89043626 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 1896 118 21 21 chr13 12829543 12829818 -89043351 - AluSx SINE Alu -28 284 7 1549 170 3 47 chr13 12829822 12830122 -89043047 - AluJb SINE Alu -25 287 1 2039 142 10 0 chr13 12830132 12830428 -89042741 - AluSx SINE Alu -13 299 1 332 287 44 94 chr13 12832504 12832685 -89040484 - L2 LINE L2 -1 3312 3141 224 164 200 0 chr13 12832680 12832735 -89040434 - MIR SINE MIR -127 135 70 * 36 40 0 0 chr13 12834704 12834754 -89038415 + AT_rich Low_complexity Low_complexity 1 50 0 1822 83 0 0 chr13 12835121 12835349 -89037820 - AluSp SINE Alu -3 310 83 364 327 90 13 chr13 12836204 12836360 -89036809 + MIR3 SINE MIR 2 169 -39 29 0 0 0 chr13 12836461 12836490 -89036679 + AT_rich Low_complexity Low_complexity 1 29 0 334 160 267 0 chr13 12836782 12836857 -89036312 + MIR SINE MIR 83 177 -85 249 81 0 0 chr13 12837264 12837301 -89035868 - MADE1 DNA Mariner -43 37 1 643 171 73 0 chr13 12838626 12838749 -89034420 - FLAM_C SINE Alu 0 133 2 331 280 153 11 chr13 12839558 12839747 -89033422 + L1MEc LINE L1 2154 2369 -4027 1279 182 60 40 chr13 12840503 12840805 -89032364 - AluJb SINE Alu -4 308 1 290 219 0 0 chr13 12841197 12841261 -89031908 - L1P LINE L1 -4468 1678 1615 331 280 153 11 chr13 12841640 12841829 -89031340 + L1MEc LINE L1 2154 2369 -4027 1686 150 42 36 chr13 12842585 12842891 -89030278 - AluJb SINE Alu -4 308 1 1096 141 44 0 chr13 12843502 12843708 -89029461 + L1PA11 LINE L1 5960 6174 0 302 78 118 0 chr13 12844364 12844415 -89028754 - L1MA9 LINE L1 0 6312 6256 319 109 0 0 chr13 12845747 12845793 -89027376 - MLT1C LTR MaLR -2 465 420 1752 149 0 0 chr13 12845795 12846077 -89027092 + MER7A DNA MER2_type 67 346 0 1521 149 113 69 chr13 12846078 12846467 -89026702 - MLT1C LTR MaLR -56 411 6 2277 103 0 13 chr13 12847642 12847953 -89025216 - AluSx SINE Alu -1 311 5 491 233 179 10 chr13 12847965 12848266 -89024903 - L1MC5 LINE L1 -311 7650 7299 293 161 18 0 chr13 12848432 12848488 -89024681 - L1MC5 LINE L1 -733 7228 7172 1239 237 50 11 chr13 12848706 12849065 -89024104 - L1M4 LINE L1 -1815 4567 4195 1584 209 10 3 chr13 12849080 12849372 -89023797 - AluSx SINE Alu -18 294 1 211 68 45 0 chr13 12849573 12849599 -89023570 + (TA)n Simple_repeat Simple_repeat 1 31 -15 2155 82 35 0 chr13 12849599 12849881 -89023288 - AluSg SINE Alu -18 292 1 211 68 45 0 chr13 12849881 12849898 -89023271 + (TA)n Simple_repeat Simple_repeat 31 46 0 558 230 50 98 chr13 12850002 12850135 -89023034 - L1M4 LINE L1 -4227 2156 2018 1862 155 3 3 chr13 12850135 12850425 -89022744 - AluJo SINE Alu -18 294 5 558 230 50 98 chr13 12850425 12850707 -89022462 - L1M4 LINE L1 -4365 2018 1397 1288 234 90 40 chr13 12851098 12851542 -89021627 - MLT1C LTR MaLR 0 467 2 2073 122 4 0 chr13 12851865 12852143 -89021026 - AluSq SINE Alu -22 291 13 1520 176 0 58 chr13 12853202 12853497 -89019672 - AluJb SINE Alu -34 278 1 21 36 0 0 chr13 12853642 12853670 -89019499 + AT_rich Low_complexity Low_complexity 1 28 0 1624 167 17 27 chr13 12853754 12854048 -89019121 - AluJo SINE Alu -10 302 12 1788 156 17 7 chr13 12854063 12854351 -89018818 - AluJb SINE Alu -19 293 3 489 266 85 19 chr13 12854400 12854948 -89018221 - L1MC5 LINE L1 -537 7495 7004 298 195 17 93 chr13 12855024 12855142 -89018027 - L1MC4 LINE L1 -989 7053 6945 2395 87 0 0 chr13 12855162 12855462 -89017707 - AluSc SINE Alu -9 300 1 377 182 15 83 chr13 12855487 12855619 -89017550 - L1MC4 LINE L1 -989 7053 6931 * 717 232 87 5 chr13 12855611 12856076 -89017093 - L1MC4 LINE L1 -6 8036 7390 189 74 0 0 chr13 12856122 12856149 -89017020 + (TG)n Simple_repeat Simple_repeat 2 28 0 1140 127 0 40 chr13 12856149 12856322 -89016847 - AluSg/x SINE Alu -26 286 121 293 143 20 0 chr13 12856324 12856373 -89016796 - Alu SINE Alu -258 50 1 787 159 15 0 chr13 12856381 12856513 -89016656 - Tigger4(Zombi) DNA MER2_type -2596 135 2 1338 221 118 17 chr13 12856533 12856940 -89016229 - L1MC4 LINE L1 -893 7149 6702 2266 113 7 0 chr13 12856960 12857262 -89015907 + AluSx SINE Alu 1 304 -8 303 282 137 0 chr13 12857634 12857751 -89015418 + MIR SINE MIR 118 250 -12 332 246 32 40 chr13 12857925 12858051 -89015118 - L1ME3A LINE L1 -50 6120 5996 262 252 16 118 chr13 12858365 12858492 -89014677 + L2 LINE L2 3155 3268 -4 2090 119 0 0 chr13 12858647 12858942 -89014227 - AluSx SINE Alu -17 295 1 414 252 101 0 chr13 12859288 12859407 -89013762 + MER94 DNA DNA 3 133 -1 254 167 21 0 chr13 12859880 12859928 -89013241 - L1M4c LINE L1 -6207 177 129 534 160 10 0 chr13 12859928 12860028 -89013141 + LTR47A LTR ERVL 329 429 -23 1668 269 70 29 chr13 12860079 12860633 -89012536 - MLT1E LTR MaLR -16 577 1 298 241 62 56 chr13 12861269 12861464 -89011705 - L1MC5 LINE L1 -36 7925 7730 180 0 0 0 chr13 12861748 12861768 -89011401 + (TATG)n Simple_repeat Simple_repeat 2 21 0 2057 91 25 7 chr13 12861771 12862056 -89011113 - AluSq SINE Alu -23 290 1 2072 129 0 7 chr13 12862551 12862846 -89010323 - AluSx SINE Alu -19 293 1 21 57 0 0 chr13 12862898 12862933 -89010236 + AT_rich Low_complexity Low_complexity 1 35 0 1406 176 65 11 chr13 12862996 12863274 -89009895 - AluJb SINE Alu -19 293 1 1685 155 0 41 chr13 12864136 12864427 -89008742 - AluJo SINE Alu -33 279 1 1615 77 14 9 chr13 12864629 12864849 -89008320 - AluY SINE Alu -9 302 82 207 219 0 0 chr13 12865807 12865848 -89007321 + T-rich Low_complexity Low_complexity 1 41 0 261 264 101 16 chr13 12866068 12866197 -89006972 + HAL1b LINE L1 742 881 -467 324 289 22 52 chr13 12866297 12866432 -89006737 + HAL1b LINE L1 808 938 -410 254 249 119 50 chr13 12866846 12866994 -89006175 - MIR SINE MIR -45 217 64 1052 212 35 64 chr13 12867601 12867974 -89005195 - L1M4 LINE L1 -5359 1183 822 347 326 149 18 chr13 12868086 12868368 -89004801 - L1M4 LINE L1 -6036 610 292 1347 159 151 0 chr13 12868590 12868835 -89004334 - AluJo SINE Alu -30 282 1 201 274 151 28 chr13 12871376 12871482 -89001687 - MIR SINE MIR -32 230 112 4357 154 45 23 chr13 12871856 12872787 -89000382 - L1P LINE L1 -5184 962 11 21 57 0 0 chr13 12872922 12872957 -89000212 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 12873036 12873057 -89000112 + AT_rich Low_complexity Low_complexity 1 21 0 251 257 169 27 chr13 12873083 12873231 -88999938 + MER112 DNA MER1_type 60 228 -32 2489 121 6 3 chr13 12874422 12874785 -88998384 - THE1B LTR MaLR 0 364 1 294 308 66 0 chr13 12874980 12875071 -88998098 - MIR SINE MIR -67 141 45 2406 64 7 3 chr13 12875170 12875465 -88997704 - AluY SINE Alu -15 296 1 1539 170 32 28 chr13 12875584 12875801 -88997368 - AluJb SINE Alu 0 323 103 1663 154 105 9 chr13 12875801 12876125 -88997044 - THE1A LTR MaLR 0 355 1 1539 170 32 28 chr13 12876125 12876229 -88996940 - AluJb SINE Alu -220 103 1 329 275 62 115 chr13 12876274 12876405 -88996764 - L1MEd LINE L1 -5205 914 778 2414 73 0 0 chr13 12876405 12876694 -88996475 - AluY SINE Alu -19 292 4 329 275 62 115 chr13 12876694 12877257 -88995912 - L1MEd LINE L1 -5341 778 257 22 0 0 0 chr13 12877402 12877424 -88995745 + AT_rich Low_complexity Low_complexity 1 22 0 1560 139 124 15 chr13 12877639 12877905 -88995264 - AluSg SINE Alu -15 295 1 400 282 96 19 chr13 12879155 12879311 -88993858 - MIR SINE MIR -7 255 88 1296 217 91 69 chr13 12880444 12880534 -88992635 - MLT1D LTR MaLR 0 505 418 2505 74 0 7 chr13 12880534 12880844 -88992325 + AluSc SINE Alu 2 309 0 1296 217 91 69 chr13 12880844 12881247 -88991922 - MLT1D LTR MaLR -87 418 1 1939 94 98 4 chr13 12882596 12882862 -88990307 - AluSx SINE Alu -21 291 1 2530 71 0 0 chr13 12882939 12883248 -88989921 - AluY SINE Alu -1 310 2 3670 194 84 84 chr13 12883259 12884109 -88989060 - L1MB8 LINE L1 0 6178 5329 1390 179 43 17 chr13 12884109 12884411 -88988758 - AluJo SINE Alu -2 310 1 3670 194 84 84 chr13 12884411 12884626 -88988543 - L1MB8 LINE L1 -849 5329 5115 1654 134 0 8 chr13 12884626 12884864 -88988305 - AluSx SINE Alu -76 236 1 3670 194 84 84 chr13 12884864 12885232 -88987937 - L1MB8 LINE L1 -1063 5115 4748 278 196 0 0 chr13 12885232 12885278 -88987891 - FRAM SINE Alu -63 103 58 3670 194 84 84 chr13 12885278 12885669 -88987500 - L1MB8 LINE L1 -1430 4748 4315 1739 103 22 37 chr13 12885674 12885894 -88987275 - L1MA5 LINE L1 -2 6298 6081 1552 197 93 7 chr13 12885894 12886204 -88986965 + MER1B DNA MER1_type 1 337 0 1739 103 22 37 chr13 12886204 12886256 -88986913 - L1MA5 LINE L1 -219 6081 6030 343 87 0 0 chr13 12886583 12886629 -88986540 - MLT1B LTR MaLR -2 388 343 1692 184 0 0 chr13 12886631 12886913 -88986256 + MER7A DNA MER2_type 67 346 0 1515 167 113 72 chr13 12886915 12887304 -88985865 - MLT1C LTR MaLR -57 410 6 998 255 87 54 chr13 12888700 12889124 -88984045 - L1ME3 LINE L1 -81 6081 5644 2145 75 4 0 chr13 12889172 12889439 -88983730 - AluSp SINE Alu -45 268 1 26 50 0 0 chr13 12890479 12890519 -88982650 + AT_rich Low_complexity Low_complexity 1 40 0 1259 196 79 192 chr13 12892032 12892266 -88980903 + L1ME3 LINE L1 5459 5718 -444 2045 114 31 0 chr13 12892266 12892555 -88980614 + AluSp SINE Alu 1 298 -15 1259 196 79 192 chr13 12892555 12893107 -88980062 + L1ME3 LINE L1 5718 6156 -6 2508 59 7 0 chr13 12893150 12893453 -88979716 - AluSp SINE Alu -8 305 1 26 50 0 0 chr13 12894493 12894533 -88978636 + AT_rich Low_complexity Low_complexity 1 40 0 1870 95 57 8 chr13 12897768 12898030 -88975139 + AluSg SINE Alu 31 305 -5 1117 117 151 34 chr13 12898152 12898358 -88974811 + MER30 DNA MER1_type 1 230 0 192 304 162 40 chr13 12898457 12898605 -88974564 - L3 LINE CR1 -193 1384 1219 187 270 169 11 chr13 12898740 12898829 -88974340 + MER5A DNA MER1_type 29 131 -58 1717 144 72 4 chr13 12898982 12899259 -88973910 - AluJo SINE Alu -16 296 1 4987 217 103 14 chr13 12899798 12900101 -88973068 + L1M4 LINE L1 3585 3860 -2286 2554 63 0 0 chr13 12900101 12900400 -88972769 + AluY SINE Alu 3 301 -10 4987 217 103 14 chr13 12900400 12900677 -88972492 + L1M4 LINE L1 3860 4111 -2035 2315 91 0 0 chr13 12900677 12900975 -88972194 + AluSx SINE Alu 1 298 -14 4987 217 103 14 chr13 12900975 12901815 -88971354 + L1M4 LINE L1 4111 5133 -1013 1042 161 50 5 chr13 12901816 12902015 -88971154 + AluJo SINE Alu 1 208 -104 2668 121 6 3 chr13 12902688 12903051 -88970118 - THE1B LTR MaLR 0 364 1 299 297 66 0 chr13 12903246 12903337 -88969832 - MIR SINE MIR -67 141 45 2411 65 7 3 chr13 12903436 12903730 -88969439 - AluY SINE Alu -16 295 1 1530 170 32 28 chr13 12903849 12904066 -88969103 - AluJb SINE Alu 0 323 103 1772 164 105 9 chr13 12904066 12904390 -88968779 - THE1A LTR MaLR 0 355 1 1530 170 32 28 chr13 12904390 12904494 -88968675 - AluJb SINE Alu -220 103 1 2311 69 14 0 chr13 12904670 12904958 -88968211 - AluY SINE Alu -19 292 1 296 113 132 0 chr13 12904958 12905011 -88968158 - MER68 LTR ERV1 -501 61 2 385 203 49 74 chr13 12905012 12905175 -88967994 - L1MC4 LINE L1 -646 7396 7238 * 1221 257 115 6 chr13 12905157 12905734 -88967435 - L1MC4a LINE L1 -791 7060 6467 375 113 0 0 chr13 12905921 12905983 -88967186 + (CA)n Simple_repeat Simple_repeat 1 62 0 497 143 0 11 chr13 12906795 12906886 -88966283 + (TA)n Simple_repeat Simple_repeat 1 90 0 1507 169 10 40 chr13 12906887 12907188 -88965981 - AluJo SINE Alu -17 295 4 301 273 64 87 chr13 12907188 12907360 -88965809 - L1MC4a LINE L1 -2001 5807 5640 2342 100 0 25 chr13 12907594 12907914 -88965255 + AluSx SINE Alu 1 312 0 3048 189 52 9 chr13 12907915 12908556 -88964613 + L1 LINE L1 4369 5036 -1110 1286 101 37 5 chr13 12908557 12908746 -88964423 - AluSc SINE Alu -10 299 105 652 111 0 0 chr13 12908750 12908840 -88964329 - LTR12 LTR ERV1 0 714 625 345 128 75 85 chr13 12908847 12908941 -88964228 - LTR30 LTR ERV1 -98 624 378 1163 130 149 7 chr13 12908968 12909183 -88963986 - LTR12 LTR ERV1 -417 2021 60 291 122 0 0 chr13 12909160 12909201 -88963968 - LTR12 LTR ERV1 -524 190 150 * 1415 222 151 7 chr13 12909350 12909760 -88963409 - MLT2B1 LTR ERVL -50 470 2 393 248 47 31 chr13 12910388 12910517 -88962652 + MIR SINE MIR 61 191 -71 580 226 17 0 chr13 12912038 12912153 -88961016 - MER94 DNA DNA -1 133 17 233 203 68 0 chr13 12912633 12912692 -88960477 + L2 LINE L2 3208 3270 -2 324 197 197 0 chr13 12913377 12913494 -88959675 + L1M4 LINE L1 2416 2555 -3591 705 276 80 46 chr13 12913503 12913820 -88959349 + L1ME3A LINE L1 5566 5899 -271 2391 109 0 0 chr13 12913820 12914132 -88959037 + AluSx SINE Alu 1 312 0 705 276 80 46 chr13 12914132 12914187 -88958982 + L1ME3A LINE L1 5899 5951 -219 1073 123 0 59 chr13 12915607 12915818 -88957351 + AluY SINE Alu 136 335 0 540 311 110 23 chr13 12916366 12916995 -88956174 + L2 LINE L2 2637 3313 0 26 50 0 0 chr13 12917000 12917040 -88956129 + AT_rich Low_complexity Low_complexity 1 40 0 2155 102 46 0 chr13 12917191 12917476 -88955693 - AluSx SINE Alu -6 306 9 2137 96 46 0 chr13 12917495 12917777 -88955392 - AluSx SINE Alu -1 311 17 2486 91 0 0 chr13 12917820 12918128 -88955041 - AluSg SINE Alu -2 308 1 300 169 0 108 chr13 12918741 12918936 -88954233 + GA-rich Low_complexity Low_complexity 3 176 0 2018 105 0 0 chr13 12919035 12919302 -88953867 - AluSx SINE Alu -45 267 1 472 254 65 30 chr13 12920922 12921091 -88952078 + MER5B DNA MER1_type 1 175 -3 504 287 62 54 chr13 12921186 12921444 -88951725 - MIR SINE MIR -2 260 1 224 318 165 0 chr13 12923012 12923097 -88950072 + MIR SINE MIR 48 146 -116 235 311 22 0 chr13 12923187 12923277 -88949892 + MIR SINE MIR 171 262 0 233 291 0 0 chr13 12923449 12923504 -88949665 + L2 LINE L2 3210 3264 -8 2114 138 0 0 chr13 12923829 12924119 -88949050 + AluSx SINE Alu 1 290 -22 1419 234 92 43 chr13 12924442 12924886 -88948283 + MLT1C LTR MaLR 2 467 0 686 234 50 98 chr13 12925277 12925559 -88947610 + L1M4c LINE L1 1397 1691 -4692 1757 168 3 3 chr13 12925559 12925850 -88947319 + AluJo SINE Alu 5 295 -17 686 234 50 98 chr13 12925850 12926080 -88947089 + L1M4c LINE L1 1691 2156 -4227 1606 89 0 0 chr13 12926104 12926306 -88946863 + AluSg SINE Alu 1 202 -108 341 301 104 26 chr13 12926575 12926768 -88946401 - MIR SINE MIR -48 214 7 2550 50 0 0 chr13 12926957 12927256 -88945913 + AluY SINE Alu 1 299 -12 37 39 0 0 chr13 12927813 12927864 -88945305 + AT_rich Low_complexity Low_complexity 1 51 0 2443 80 0 0 chr13 12928586 12928886 -88944283 + AluSx SINE Alu 1 300 -12 231 245 88 29 chr13 12929184 12929286 -88943883 + L2 LINE L2 2932 3039 -233 189 368 0 0 chr13 12929433 12929490 -88943679 + L2 LINE L2 3234 3290 -23 31 26 0 0 chr13 12930883 12930921 -88942248 + AT_rich Low_complexity Low_complexity 1 38 0 900 201 165 25 chr13 12930976 12931255 -88941914 - MER2 DNA MER2_type 0 345 28 1242 210 205 7 chr13 12931394 12931969 -88941200 + L1M4c LINE L1 2507 3195 -3187 262 297 106 59 chr13 12931976 12932232 -88940937 - LTR16A1 LTR ERVL -2 455 188 11684 111 38 57 chr13 12933509 12933848 -88939321 - Tigger1 DNA MER2_type 0 2418 2074 730 33 0 0 chr13 12933848 12933938 -88939231 - AluY SINE Alu -8 303 214 11684 111 38 57 chr13 12933938 12935669 -88937500 - Tigger1 DNA MER2_type -344 2074 300 573 149 0 0 chr13 12935680 12935774 -88937395 - AluSp/q SINE Alu -19 294 201 901 134 23 12 chr13 12935905 12936076 -88937093 + Tigger1 DNA MER2_type 300 472 -1946 180 0 0 0 chr13 12936078 12936098 -88937071 + (CA)n Simple_repeat Simple_repeat 1 20 0 2252 90 24 0 chr13 12936107 12936397 -88936772 + AluSc SINE Alu 3 299 -10 2742 189 52 9 chr13 12936398 12937039 -88936130 - L1 LINE L1 -1110 5036 4369 2370 97 0 25 chr13 12937040 12937360 -88935809 - AluSx SINE Alu 0 312 1 1621 164 10 39 chr13 12937766 12938078 -88935091 + AluJo SINE Alu 4 306 -6 383 173 12 0 chr13 12938078 12938159 -88935010 + (TA)n Simple_repeat Simple_repeat 1 82 0 243 0 0 0 chr13 12938162 12938189 -88934980 + (CA)n Simple_repeat Simple_repeat 2 28 0 375 113 0 0 chr13 12938979 12939041 -88934128 + (TG)n Simple_repeat Simple_repeat 1 62 0 288 0 0 0 chr13 12939131 12939163 -88934006 + (TG)n Simple_repeat Simple_repeat 1 32 0 1487 249 116 2 chr13 12939238 12939775 -88933394 + L1MC4 LINE L1 6463 7060 -982 1465 247 87 35 chr13 12939801 12939965 -88933204 + L1MC4 LINE L1 7238 7392 -650 2077 186 118 33 chr13 12939965 12940018 -88933151 + MER68 LTR ERV1 2 49 -513 2270 70 17 7 chr13 12940018 12940319 -88932850 + AluY SINE Alu 1 304 -7 2077 186 118 33 chr13 12940319 12940782 -88932387 + MER68 LTR ERV1 49 562 0 1465 247 87 35 chr13 12940782 12941249 -88931920 + L1MC4 LINE L1 7392 7902 -140 257 130 56 0 chr13 12941252 12941306 -88931863 + L1MC4 LINE L1 7986 8042 0 411 319 141 4 chr13 12944182 12944423 -88928746 - L2 LINE L2 -1026 2288 2015 3440 188 22 39 chr13 12944725 12945505 -88927664 + L1MC2 LINE L1 4409 5151 -1193 2103 95 42 0 chr13 12945505 12945788 -88927381 + AluSp SINE Alu 1 295 -18 3440 188 22 39 chr13 12945788 12946582 -88926587 + L1MC2 LINE L1 5151 5957 -387 979 228 98 70 chr13 12946648 12946812 -88926357 + L1MC4 LINE L1 7177 7335 -707 1629 192 10 3 chr13 12946812 12947104 -88926065 + AluJo SINE Alu 1 294 -18 979 228 98 70 chr13 12947104 12947421 -88925748 + L1MC4 LINE L1 7335 7671 -371 1638 167 0 26 chr13 12947456 12947725 -88925444 + AluJo SINE Alu 1 262 -50 432 313 24 24 chr13 12948805 12948969 -88924200 - MER5B DNA MER1_type -22 167 4 208 239 43 0 chr13 12948979 12949025 -88924144 + L3 LINE CR1 1528 1575 -2 441 230 186 6 chr13 12949139 12949300 -88923869 - MIR SINE MIR -49 213 24 2130 117 10 3 chr13 12949775 12950075 -88923094 + AluSq SINE Alu 1 302 -11 518 301 11 27 chr13 12950149 12950332 -88922837 + MIR SINE MIR 21 200 -62 1057 111 26 214 chr13 12950392 12950575 -88922594 - Tigger4(Zombi) DNA MER2_type 0 2731 2572 408 52 0 0 chr13 12950575 12950633 -88922536 - AluSp/q SINE Alu -12 301 244 1057 111 26 214 chr13 12950633 12950733 -88922436 - Tigger4(Zombi) DNA MER2_type -159 2572 2455 376 315 151 21 chr13 12950940 12951509 -88921660 + L1MC4a LINE L1 5255 5897 -1911 957 118 0 0 chr13 12951542 12951669 -88921500 + AluSq/x SINE Alu 1 127 -185 497 148 0 12 chr13 12951946 12952027 -88921142 - FLAM_A SINE Alu -14 128 49 21 0 0 0 chr13 12953920 12953941 -88919228 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr13 12954029 12954053 -88919116 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 620 234 8 8 chr13 12954053 12954177 -88918992 - L2 LINE L2 -13 3259 3136 186 347 160 0 chr13 12954509 12954584 -88918585 + L2 LINE L2 3196 3282 -31 288 0 0 0 chr13 12954602 12954634 -88918535 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 506 291 243 8 chr13 12954906 12955338 -88917831 + L2 LINE L2 2597 3129 -184 228 250 262 0 chr13 12955367 12955451 -88917718 + L2 LINE L2 3136 3241 -31 207 0 0 0 chr13 12956198 12956221 -88916948 + (TAA)n Simple_repeat Simple_repeat 2 24 0 809 138 39 15 chr13 12956221 12956351 -88916818 + FLAM_C SINE Alu 1 133 0 189 74 0 0 chr13 12956352 12956379 -88916790 + (GA)n Simple_repeat Simple_repeat 2 28 0 1818 170 14 3 chr13 12956632 12956921 -88916248 - AluJo SINE Alu -20 292 1 419 252 123 22 chr13 12957558 12957733 -88915436 + MIR SINE MIR 3 191 -71 238 339 91 25 chr13 12957853 12957974 -88915195 + MIR SINE MIR 83 211 -51 235 348 143 27 chr13 12958144 12958256 -88914913 + L2 LINE L2 3132 3256 -16 244 241 9 45 chr13 12959141 12959253 -88913916 + L1MC4a LINE L1 5794 5901 -1907 21 0 0 0 chr13 12959290 12959311 -88913858 + AT_rich Low_complexity Low_complexity 1 21 0 304 370 123 24 chr13 12959443 12959633 -88913536 + L1MC4a LINE L1 6179 6349 -1459 2259 136 0 0 chr13 12959633 12959941 -88913228 + AluSx SINE Alu 1 308 -4 304 370 123 24 chr13 12959941 12960131 -88913038 + L1MC4a LINE L1 6349 6597 -1211 431 275 38 7 chr13 12960132 12960322 -88912847 + L1MC5 LINE L1 6660 6788 -1173 6872 31 0 0 chr13 12960327 12961137 -88912032 + L1PA3 LINE L1 5346 6155 0 1695 153 69 4 chr13 12961265 12961539 -88911630 + AluSx SINE Alu 1 292 -20 540 216 92 133 chr13 12961618 12962226 -88910943 + L1MC5 LINE L1 7014 7573 -388 2142 79 24 10 chr13 12962226 12962517 -88910652 + AluSg SINE Alu 1 295 -15 540 216 92 133 chr13 12962517 12962825 -88910344 + L1MC5 LINE L1 7573 7892 -69 187 279 93 12 chr13 12963103 12963189 -88909980 - MIR3 SINE MIR -54 154 62 598 231 112 24 chr13 12964358 12964609 -88908560 - Charlie7 DNA MER1_type -230 2382 2110 677 279 88 0 chr13 12964652 12964856 -88908313 + MIR SINE MIR 6 227 -35 1538 163 27 27 chr13 12964877 12965177 -88907992 - AluJo SINE Alu -12 300 1 232 253 267 9 chr13 12965201 12965426 -88907743 - Charlie7 DNA MER1_type -2239 373 91 1115 133 8 113 chr13 12965534 12965816 -88907353 + AluJo SINE Alu 86 312 0 1027 163 17 22 chr13 12967280 12967458 -88905711 + AluJo SINE Alu 82 258 -54 2472 70 3 0 chr13 12968528 12968830 -88904339 + AluY SINE Alu 1 303 -8 1447 140 42 114 chr13 12969130 12969488 -88903681 + Tigger3(Golem) DNA MER2_type 2 3013 -16 324 306 142 19 chr13 12969822 12970083 -88903086 + L1ME3A LINE L1 5592 5884 -286 1097 182 22 26 chr13 12970977 12971246 -88901923 - Tigger1 DNA MER2_type -2133 285 18 2286 89 3 3 chr13 12971712 12972003 -88901166 - AluSx SINE Alu -21 291 1 1664 254 50 22 chr13 12972005 12972473 -88900696 - L1MDa LINE L1 -3172 3368 2914 188 33 0 33 chr13 12972473 12972503 -88900666 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1463 168 4 0 chr13 12972509 12972741 -88900428 - AluJo SINE Alu -30 282 50 1664 254 50 22 chr13 12972741 12972951 -88900218 - L1MDa LINE L1 -3630 2910 2664 1823 253 64 16 chr13 12972965 12973728 -88899441 - L1MDa LINE L1 -3983 2557 1758 1275 180 9 14 chr13 12974078 12974295 -88898874 - AluJo SINE Alu -96 216 1 251 301 75 0 chr13 12974350 12974443 -88898726 + MIR SINE MIR 61 160 -102 299 286 281 15 chr13 12974746 12974942 -88898227 + MIR SINE MIR 14 261 -1 245 350 99 72 chr13 12974940 12975343 -88897826 - L2 LINE L2 0 3272 2859 * 222 315 98 39 chr13 12975376 12975630 -88897539 - L2 LINE L2 -508 2806 2538 330 324 81 74 chr13 12975711 12976721 -88896448 + L2 LINE L2 2115 3142 -130 235 327 18 26 chr13 12977018 12977131 -88896038 + L2 LINE L2 2917 3028 -244 * 236 292 266 12 chr13 12977112 12977601 -88895568 - L2 LINE L2 -950 2364 1752 1929 128 59 64 chr13 12978345 12978752 -88894417 - MSTC LTR MaLR -6 422 18 1705 143 4 4 chr13 13179117 13179389 -88693780 + AluSx SINE Alu 1 272 -40 207 0 0 0 chr13 13179395 13179418 -88693751 + (TAA)n Simple_repeat Simple_repeat 2 24 0 727 195 31 0 chr13 13180259 13180387 -88692782 - FLAM_A SINE Alu -1 132 1 183 280 40 0 chr13 13180429 13180479 -88692690 - MIR SINE MIR -13 249 198 1898 153 29 63 chr13 13180521 13180828 -88692341 + MLT2C1 LTR ERVL 1 317 -80 1839 107 92 0 chr13 13180828 13181109 -88692060 - AluSq SINE Alu -6 307 1 1898 153 29 63 chr13 13181109 13181166 -88692003 + MLT2C1 LTR ERVL 317 352 -45 342 0 0 0 chr13 13181166 13181204 -88691965 + (CA)n Simple_repeat Simple_repeat 2 39 0 1898 153 29 63 chr13 13181204 13181249 -88691920 + MLT2C1 LTR ERVL 352 397 0 424 261 0 0 chr13 13181262 13181354 -88691815 - MIR SINE MIR -107 155 64 185 312 108 11 chr13 13181744 13181837 -88691332 + L2 LINE L2 3136 3237 -35 298 245 89 19 chr13 13183348 13183506 -88689663 + MIR SINE MIR 40 203 -59 269 279 116 0 chr13 13184198 13184284 -88688885 - L2 LINE L2 -937 2377 2282 902 219 38 162 chr13 13184284 13184759 -88688410 - MLT1E LTR MaLR -1 592 177 353 280 170 10 chr13 13184858 13185058 -88688111 - L2 LINE L2 -1030 2284 2053 396 273 43 43 chr13 13185699 13185838 -88687331 - L2 LINE L2 -1 3271 3133 2172 92 3 0 chr13 13185877 13186169 -88687000 + AluSp SINE Alu 1 293 -20 2205 144 31 89 chr13 13186184 13186669 -88686500 + MER31B LTR ERV1 1 457 -9 215 328 16 0 chr13 13186731 13186792 -88686377 - L2 LINE L2 -203 3069 3008 905 215 16 0 chr13 13186815 13187001 -88686168 + LTR37B LTR ERV1 9 197 -271 207 0 0 0 chr13 13187023 13187046 -88686123 + (T)n Simple_repeat Simple_repeat 1 23 0 1104 211 26 8 chr13 13187065 13187331 -88685838 + LTR37B LTR ERV1 198 468 0 2114 83 36 53 chr13 13187414 13187649 -88685520 - L1MA2 LINE L1 0 6304 6076 1908 138 0 20 chr13 13187649 13187954 -88685215 - AluJb SINE Alu -9 303 5 2114 83 36 53 chr13 13187954 13188079 -88685090 - L1MA2 LINE L1 -228 6076 5950 1902 190 104 40 chr13 13189066 13189565 -88683604 + MER74A LTR ERVL 1 531 -27 634 252 37 23 chr13 13193302 13193520 -88679649 - MER102b DNA MER1_type -2 339 119 449 341 27 23 chr13 13193591 13193811 -88679358 - L3b LINE CR1 -64 1519 1299 224 179 90 30 chr13 13193946 13194013 -88679156 + MIR SINE MIR 75 145 -63 408 298 0 0 chr13 13194083 13194187 -88678982 + MIR SINE MIR 31 134 -128 1775 135 50 0 chr13 13194189 13194470 -88678699 - AluJo SINE Alu -17 295 1 1826 135 0 4 chr13 13194509 13194783 -88678386 - AluSx SINE Alu -37 275 3 233 299 15 0 chr13 13194788 13194855 -88678314 + MIR SINE MIR 123 190 -72 290 325 125 34 chr13 13194906 13195371 -88677798 - L2 LINE L2 -810 2504 1998 244 345 108 21 chr13 13195982 13196176 -88676993 + MIR SINE MIR 20 230 -32 1554 154 0 30 chr13 13201031 13201297 -88671872 - AluJo SINE Alu -39 273 16 1114 239 75 50 chr13 13201374 13201830 -88671339 - MLT1C LTR MaLR 0 467 1 187 203 63 101 chr13 13201830 13201909 -88671260 + L2 LINE L2 3187 3262 -10 1019 54 78 0 chr13 13202508 13202637 -88670532 - MER85 DNA T2_type 0 139 1 2539 58 0 0 chr13 13202721 13203032 -88670137 + AluY SINE Alu 1 311 0 1675 166 0 25 chr13 13204224 13204543 -88668626 - AluJb SINE Alu -1 311 1 267 268 41 21 chr13 13204612 13204709 -88668460 + MER94 DNA DNA 2 100 -34 662 217 94 57 chr13 13205291 13205503 -88667666 + MIR SINE MIR 43 262 0 418 280 0 0 chr13 13205785 13205885 -88667284 + MIR SINE MIR 130 229 -33 220 333 43 11 chr13 13206507 13206600 -88666569 - L3b LINE CR1 -120 1463 1368 200 313 98 0 chr13 13208904 13209016 -88664153 - MIR SINE MIR -66 142 20 22 70 0 0 chr13 13209270 13209313 -88663856 + AT_rich Low_complexity Low_complexity 1 43 0 2052 140 16 82 chr13 13209597 13209708 -88663461 + L1MB3 LINE L1 5174 5291 -889 1502 168 17 24 chr13 13209708 13210005 -88663164 + AluJo SINE Alu 1 295 -17 2052 140 16 82 chr13 13210005 13210391 -88662778 + L1MB3 LINE L1 5291 5633 -547 2998 178 16 60 chr13 13210401 13211030 -88662139 - LTR9 LTR ERV1 -11 601 1 1787 126 22 0 chr13 13211031 13211308 -88661861 + L1MB3 LINE L1 5630 5912 -271 3359 124 2 71 chr13 13211308 13211616 -88661553 + MER4B LTR ERV1 1 250 -360 1907 131 7 0 chr13 13211616 13211906 -88661263 - AluSx SINE Alu -16 296 5 3359 124 2 71 chr13 13211906 13212187 -88660982 + MER4B LTR ERV1 250 549 -61 2035 97 3 17 chr13 13212191 13212481 -88660688 - AluSx SINE Alu -11 301 16 837 273 79 51 chr13 13213050 13213622 -88659547 - HAL1 LINE L1 -794 1713 1126 2113 115 0 7 chr13 13213672 13213968 -88659201 - AluSq SINE Alu -19 294 1 207 0 0 0 chr13 13214358 13214381 -88658788 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1705 143 4 4 chr13 13214387 13214659 -88658510 - AluSx SINE Alu -40 272 1 927 277 97 28 chr13 13215106 13215502 -88657667 + MER57B LTR ERV1 13 434 0 22 0 0 0 chr13 13216023 13216045 -88657124 + AT_rich Low_complexity Low_complexity 1 22 0 839 318 37 41 chr13 13216419 13216884 -88656285 + MLT1K LTR MaLR 102 564 -24 292 242 91 61 chr13 13216942 13217074 -88656095 - MIR SINE MIR -62 200 65 201 318 84 19 chr13 13217076 13217183 -88655986 + L2 LINE L2 3200 3313 0 2343 82 0 3 chr13 13217458 13217761 -88655408 - AluSq SINE Alu -11 302 1 328 279 186 16 chr13 13218337 13218466 -88654703 + MIR SINE MIR 20 170 -92 2485 62 0 0 chr13 13219811 13220119 -88653050 + AluY SINE Alu 1 308 -3 487 295 162 48 chr13 13220251 13220393 -88652776 + L1MC3 LINE L1 5015 5139 -982 186 43 0 0 chr13 13220393 13220416 -88652753 + (CA)n Simple_repeat Simple_repeat 2 24 0 487 295 162 48 chr13 13220416 13221012 -88652157 + L1MC3 LINE L1 5139 5545 -576 293 272 10 19 chr13 13221055 13221158 -88652011 + (TA)n Simple_repeat Simple_repeat 2 103 0 984 250 9 0 chr13 13221173 13221389 -88651780 - MIR SINE MIR -33 229 12 207 114 0 0 chr13 13222620 13222655 -88650514 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 1165 210 36 20 chr13 13222908 13223160 -88650009 - MER58B DNA MER1_type 0 341 86 266 114 0 23 chr13 13223160 13223204 -88649965 + L1 LINE L1 4560 4602 -1544 370 250 25 0 chr13 13223207 13223287 -88649882 - MER58B DNA MER1_type -259 82 1 538 259 79 42 chr13 13223381 13223570 -88649599 + MIR SINE MIR 64 259 -3 1377 246 69 33 chr13 13223872 13224351 -88648818 - MER74B LTR ERVL -52 570 75 270 203 34 0 chr13 13225233 13225292 -88647877 - MIR SINE MIR -5 257 197 229 311 147 65 chr13 13225323 13225677 -88647492 - L2 LINE L2 0 3272 2890 1968 141 85 32 chr13 13225772 13226148 -88647021 - MSTD LTR MaLR 0 396 1 1028 212 35 35 chr13 13226152 13226411 -88646758 - MLT1B LTR MaLR -113 277 19 200 321 76 89 chr13 13226413 13226927 -88646242 - L2 LINE L2 -656 2658 2152 415 260 285 10 chr13 13227087 13227287 -88645882 - MIR SINE MIR -6 256 2 326 284 11 11 chr13 13227297 13227392 -88645777 - MIR SINE MIR -111 151 57 506 298 93 31 chr13 13227478 13227767 -88645402 - L2 LINE L2 -1359 1955 1649 568 313 95 16 chr13 13228120 13228488 -88644681 + L1ME4a LINE L1 5530 5926 -195 2084 129 0 0 chr13 13228940 13229234 -88643935 - AluSq SINE Alu -19 294 1 265 250 155 0 chr13 13229658 13229742 -88643427 + L2 LINE L2 3208 3304 -9 198 311 0 0 chr13 13229753 13229798 -88643371 + MIR SINE MIR 46 90 -172 * 866 346 81 20 chr13 13229788 13230421 -88642748 + L2 LINE L2 2178 2848 -466 185 345 0 0 chr13 13230714 13230772 -88642397 + L2 LINE L2 3201 3258 -14 25 31 0 0 chr13 13232624 13232656 -88640513 + GC_rich Low_complexity Low_complexity 1 32 0 302 181 0 14 chr13 13234610 13234682 -88638487 + CT-rich Low_complexity Low_complexity 4 74 0 324 143 0 0 chr13 13234790 13234846 -88638323 + (TCCC)n Simple_repeat Simple_repeat 4 59 0 1843 157 30 10 chr13 13234938 13235238 -88637931 + AluJb SINE Alu 1 306 -6 300 27 0 0 chr13 13236279 13236316 -88636853 + (CA)n Simple_repeat Simple_repeat 2 38 0 294 269 77 0 chr13 13236531 13236635 -88636534 - MIR SINE MIR -105 157 46 411 247 0 0 chr13 13237157 13237254 -88635915 + MIR SINE MIR 63 159 -103 223 285 89 0 chr13 13237272 13237395 -88635774 - MIR SINE MIR -48 214 81 423 214 255 7 chr13 13237877 13238022 -88635147 - MER5A DNA MER1_type 0 189 9 297 286 143 0 chr13 13238072 13238191 -88634978 + L2 LINE L2 3137 3272 0 234 0 0 0 chr13 13238604 13238630 -88634539 + (CA)n Simple_repeat Simple_repeat 2 27 0 305 284 154 18 chr13 13239036 13239205 -88633964 - MIR SINE MIR -14 248 57 1734 160 0 54 chr13 13239317 13239630 -88633539 - AluJo SINE Alu -16 296 1 2171 115 0 3 chr13 13239856 13240169 -88633000 + AluSx SINE Alu 1 312 0 183 173 19 58 chr13 13241564 13241616 -88631553 + L2 LINE L2 3264 3313 0 451 288 58 47 chr13 13242819 13243010 -88630159 + L3 LINE CR1 710 902 -675 2465 107 123 5 chr13 13243619 13244002 -88629167 - MSTA LTR MaLR 0 428 1 227 191 0 0 chr13 13244483 13244525 -88628644 - MIR SINE MIR -102 160 119 517 270 59 7 chr13 13245375 13245527 -88627642 - MER91B DNA MER1_type -8 182 23 1868 154 20 10 chr13 13246410 13246709 -88626460 + AluJo SINE Alu 11 312 0 26 30 0 0 chr13 13248180 13248213 -88624956 + AT_rich Low_complexity Low_complexity 1 33 0 2332 90 7 0 chr13 13248351 13248650 -88624519 - AluSq SINE Alu -12 301 1 2184 120 0 16 chr13 13249000 13249317 -88623852 - AluSx SINE Alu 0 312 1 203 229 0 0 chr13 13249391 13249426 -88623743 + polypyrimidine Low_complexity Low_complexity 2 36 0 328 244 6 6 chr13 13249428 13249588 -88623581 + CT-rich Low_complexity Low_complexity 2 161 0 339 236 63 47 chr13 13252421 13252548 -88620621 - L2 LINE L2 -1 3312 3184 2227 117 0 0 chr13 13252675 13252987 -88620182 - AluSq SINE Alu 0 313 2 219 36 0 0 chr13 13253125 13253153 -88620016 + (T)n Simple_repeat Simple_repeat 1 28 0 710 242 150 39 chr13 13253172 13253364 -88619805 + MARNA DNA Mariner 243 473 -113 2278 111 53 8 chr13 13253364 13253723 -88619446 + THE1C LTR MaLR 1 375 0 710 242 150 39 chr13 13253723 13253790 -88619379 + MARNA DNA Mariner 473 531 -55 928 143 0 0 chr13 13253925 13254058 -88619111 + AluJb SINE Alu 1 133 -179 189 0 0 0 chr13 13254058 13254079 -88619090 + (A)n Simple_repeat Simple_repeat 1 21 0 1883 189 25 3 chr13 13254403 13254757 -88618412 + MLT2D LTR ERVL 1 362 -52 333 246 239 0 chr13 13255052 13255182 -88617987 - MER5A DNA MER1_type 0 189 29 287 206 29 0 chr13 13255224 13255292 -88617877 + MER5A DNA MER1_type 43 112 -77 243 328 0 0 chr13 13255611 13255678 -88617491 + (CGTG)n Simple_repeat Simple_repeat 4 70 0 1745 181 13 3 chr13 13255697 13255996 -88617173 - AluJo SINE Alu -10 302 1 205 278 96 9 chr13 13256388 13256503 -88616666 + L2 LINE L2 2919 3043 -229 193 269 115 0 chr13 13256808 13256886 -88616283 - MIR SINE MIR -68 194 108 489 194 100 65 chr13 13257591 13257761 -88615408 - LTR45B LTR ERV1 -1 488 313 456 299 111 42 chr13 13259861 13260195 -88612974 + L2 LINE L2 2025 2381 -933 710 219 89 33 chr13 13260527 13260720 -88612449 - MLT1D LTR MaLR 0 505 324 6747 112 62 68 chr13 13260720 13262003 -88611166 + MER52C LTR ERV1 1 1276 -2 710 219 89 33 chr13 13262003 13262197 -88610972 - MLT1D LTR MaLR -181 324 27 309 298 25 0 chr13 13263404 13263525 -88609644 + MER117 DNA MER1_type 39 162 -35 1115 185 177 48 chr13 13264402 13264781 -88608388 - MSTC LTR MaLR 0 428 1 771 251 98 4 chr13 13264784 13265059 -88608110 + L2 LINE L2 1921 2221 -1093 2642 61 0 0 chr13 13266419 13266729 -88606440 - AluY SINE Alu -1 310 1 1539 119 0 0 chr13 13266838 13267056 -88606113 + AluSg/x SINE Alu 85 302 -8 403 256 130 14 chr13 13267087 13267294 -88605875 + MIR SINE MIR 3 233 -29 14106 205 38 18 chr13 13267593 13272855 -88600314 - L1PB3 LINE L1 -1 6210 800 5970 218 112 77 chr13 13272855 13273838 -88599331 - Charlie2a DNA MER1_type -97 2765 1818 7502 43 0 4 chr13 13273838 13275295 -88597874 - L1PA4 LINE L1 -3 6152 4699 5970 218 112 77 chr13 13275295 13276222 -88596947 - Charlie2a DNA MER1_type -1044 1818 739 1680 127 0 0 chr13 13276222 13276443 -88596726 + AluSx SINE Alu 3 223 -89 5970 218 112 77 chr13 13276443 13277128 -88596041 - Charlie2a DNA MER1_type -2123 739 79 1699 157 0 25 chr13 13277182 13277468 -88595701 + AluJo SINE Alu 20 298 -14 1547 239 65 62 chr13 13277631 13278484 -88594685 - L1MC5 LINE L1 -48 7913 7059 28 71 0 0 chr13 13278494 13278550 -88594619 + AT_rich Low_complexity Low_complexity 1 56 0 1542 158 79 7 chr13 13279130 13279433 -88593736 - L1MB5 LINE L1 0 6174 5850 786 225 0 6 chr13 13279504 13279673 -88593496 - L1MB5 LINE L1 -330 5844 5677 180 264 69 0 chr13 13279719 13279791 -88593378 + L2 LINE L2 2941 3017 -255 441 280 105 25 chr13 13279996 13280282 -88592887 - L2 LINE L2 -788 2526 2218 387 0 0 0 chr13 13280352 13280374 -88592795 + (CA)n Simple_repeat Simple_repeat 1 65 0 387 0 0 0 chr13 13280374 13280417 -88592752 + (CA)n Simple_repeat Simple_repeat 2 44 0 1591 197 3 14 chr13 13280570 13280854 -88592315 - AluJo SINE Alu -31 281 1 653 227 117 43 chr13 13281077 13281170 -88591999 + L1MC5 LINE L1 7200 7285 -676 1475 81 90 0 chr13 13281170 13281381 -88591788 + MER30 DNA MER1_type 1 230 0 653 227 117 43 chr13 13281381 13281543 -88591626 + L1MC5 LINE L1 7285 7474 -487 1188 267 70 11 chr13 13281612 13282084 -88591085 - L2 LINE L2 -1478 1836 1337 3684 15 0 0 chr13 13282114 13282526 -88590643 - L1PA4 LINE L1 -3 6152 5741 254 349 92 28 chr13 13283454 13283781 -88589388 - L2 LINE L2 -407 2907 2560 364 250 19 19 chr13 13283837 13283941 -88589228 + L2 LINE L2 3169 3272 0 246 237 42 121 chr13 13284767 13284982 -88588187 + L2 LINE L2 1572 1769 -1545 497 234 82 43 chr13 13284984 13285168 -88588001 - MIR SINE MIR -37 225 35 677 253 104 65 chr13 13285273 13285780 -88587389 - HAL1 LINE L1 -1 2506 1980 1488 213 106 24 chr13 13285823 13286240 -88586929 + HAL1 LINE L1 1251 1701 -806 893 260 96 122 chr13 13286244 13286332 -88586837 - HAL1 LINE L1 -1296 1211 1122 1856 152 26 19 chr13 13286332 13286641 -88586528 - AluSx SINE Alu -1 311 1 893 260 96 122 chr13 13286641 13286914 -88586255 - HAL1 LINE L1 -1385 1122 844 227 238 0 0 chr13 13286914 13286956 -88586213 + MER69 DNA AcHobo 1 42 -2484 893 260 96 122 chr13 13286956 13287642 -88585527 - HAL1 LINE L1 -1663 844 150 356 303 124 8 chr13 13287752 13288099 -88585070 + L2 LINE L2 1830 2286 -1028 302 289 107 20 chr13 13288302 13288451 -88584718 + L2 LINE L2 2719 2880 -434 2367 88 0 19 chr13 13288907 13289224 -88583945 - AluY SINE Alu 0 311 1 213 280 75 29 chr13 13290297 13290420 -88582749 - MER5B DNA MER1_type -30 159 24 198 299 13 39 chr13 13290365 13290442 -88582727 + MER5A DNA MER1_type 113 187 -2 * 2100 191 31 8 chr13 13290702 13291089 -88582080 - MSTD LTR MaLR 0 396 1 340 104 0 0 chr13 13291877 13291925 -88581244 + MER53 DNA DNA 5 52 -137 321 197 92 0 chr13 13291931 13292007 -88581162 - MER53 DNA DNA -84 105 23 * 395 113 113 14 chr13 13291948 13292019 -88581150 + MER53 DNA DNA 112 189 0 2251 109 0 3 chr13 13292521 13292824 -88580345 - AluSq SINE Alu 0 313 12 367 328 194 7 chr13 13293366 13293778 -88579391 - L3 LINE CR1 -11 1566 1078 2393 149 171 21 chr13 13294140 13294656 -88578513 - LTR49 LTR ERV1 -2 593 1 23 0 0 0 chr13 13295848 13295871 -88577298 + AT_rich Low_complexity Low_complexity 1 23 0 462 18 0 0 chr13 13296255 13296310 -88576859 + (TG)n Simple_repeat Simple_repeat 1 55 0 204 135 0 0 chr13 13297518 13297555 -88575614 + (GA)n Simple_repeat Simple_repeat 2 38 0 2846 180 40 64 chr13 13298601 13298721 -88574448 + L1ME2 LINE L1 5460 5581 -583 2122 141 0 6 chr13 13298721 13299033 -88574136 - AluSx SINE Alu -2 310 1 2846 180 40 64 chr13 13299033 13299634 -88573535 + L1ME2 LINE L1 5581 6164 0 207 146 0 0 chr13 13299738 13299779 -88573390 + (CA)n Simple_repeat Simple_repeat 2 42 0 1794 125 110 0 chr13 13299964 13300228 -88572941 + AluSx SINE Alu 1 293 -19 225 0 0 0 chr13 13300228 13300253 -88572916 + (TA)n Simple_repeat Simple_repeat 2 26 0 252 171 26 79 chr13 13300293 13300369 -88572800 - MIR SINE MIR -58 150 79 276 338 142 15 chr13 13300507 13300711 -88572458 - MIR SINE MIR -12 250 21 229 271 42 42 chr13 13301178 13301296 -88571873 - L1 LINE L1 -3135 3011 2894 451 301 63 44 chr13 13301493 13301859 -88571310 - L1 LINE L1 -3516 2630 2258 198 71 0 0 chr13 13302290 13302318 -88570851 + (CA)n Simple_repeat Simple_repeat 1 28 0 222 37 0 0 chr13 13302406 13302433 -88570736 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 325 185 176 28 chr13 13302789 13302897 -88570272 - L2 LINE L2 -10 3303 3180 413 281 40 58 chr13 13302910 13303134 -88570035 - L2 LINE L2 -287 3026 2807 1139 180 14 5 chr13 13303369 13303586 -88569583 - L1MC3 LINE L1 -1585 6200 5982 597 245 49 12 chr13 13303829 13303992 -88569177 + MLT1H LTR MaLR 2 170 -379 1053 9 0 0 chr13 13304263 13304379 -88568790 + AluYb8 SINE Alu 200 315 -3 6070 135 174 7 chr13 13304731 13305826 -88567343 - MER52C LTR ERV1 0 1278 1 501 272 120 0 chr13 13306117 13306275 -88566894 + MER5B DNA MER1_type 1 177 -1 368 292 41 59 chr13 13306547 13306766 -88566403 - LTR33 LTR ERVL -306 215 1 25 99 0 0 chr13 13306820 13306901 -88566268 + AT_rich Low_complexity Low_complexity 1 81 0 23 0 0 0 chr13 13306990 13307013 -88566156 + AT_rich Low_complexity Low_complexity 1 23 0 203 211 0 0 chr13 13307667 13307705 -88565464 - L2 LINE L2 -200 3072 3035 3103 222 45 58 chr13 13307811 13308008 -88565161 - MER21B LTR ERV1 -11 852 654 2701 179 70 49 chr13 13308008 13308683 -88564486 + LTR8 LTR ERV1 3 691 0 3103 222 45 58 chr13 13308683 13309337 -88563832 - MER21B LTR ERV1 -209 654 12 255 176 37 139 chr13 13309357 13309465 -88563704 - MER102b DNA MER1_type -24 317 221 1130 263 14 10 chr13 13309614 13309907 -88563262 + MER87 LTR ERV1 198 491 -50 1845 213 86 72 chr13 13310058 13310482 -88562687 - L1ME1 LINE L1 -46 6915 6478 2127 135 6 6 chr13 13310482 13310793 -88562376 - AluSx SINE Alu -1 311 1 1845 213 86 72 chr13 13310793 13311008 -88562161 - L1ME1 LINE L1 -483 6478 6267 3040 142 129 5 chr13 13311011 13311576 -88561593 - LTR24C LTR ERV1 0 635 1 740 225 5 5 chr13 13311599 13311870 -88561299 - L1ME1 LINE L1 -743 6198 5970 874 192 10 43 chr13 13311902 13312110 -88561059 - L1ME1 LINE L1 -2145 4796 4596 253 214 0 0 chr13 13312133 13312175 -88560994 - AluJ/monomer SINE Alu -258 43 2 * 263 143 0 24 chr13 13312142 13312184 -88560985 - AluSp SINE Alu -134 169 129 3344 236 38 30 chr13 13312218 13313286 -88559883 - L1ME1 LINE L1 -2704 4237 3161 2198 115 23 0 chr13 13313288 13313592 -88559577 - AluSx SINE Alu -1 311 1 535 243 57 0 chr13 13313637 13313777 -88559392 - L1ME1 LINE L1 -5460 963 816 406 260 76 48 chr13 13313998 13314332 -88558837 - L1ME1 LINE L1 -5689 733 57 306 235 83 53 chr13 13314342 13314474 -88558695 - MER102b DNA MER1_type -173 168 33 608 313 35 67 chr13 13314713 13314847 -88558322 + L1ME4a LINE L1 4405 4542 -1604 2457 49 0 3 chr13 13314847 13315159 -88558010 + AluY SINE Alu 1 311 0 608 313 35 67 chr13 13315159 13315678 -88557491 + L1ME4a LINE L1 4542 5038 -1108 3635 84 2 6 chr13 13315695 13316184 -88556985 - L1PA8 LINE L1 0 6172 5686 1024 42 0 0 chr13 13316184 13316304 -88556865 + L1PA8 LINE L1 5562 5681 -491 285 291 126 24 chr13 13316608 13316683 -88556486 + L1ME4a LINE L1 5452 5518 -603 1918 220 48 22 chr13 13316683 13317138 -88556031 - MLT1C LTR MaLR 0 467 1 285 291 126 24 chr13 13317138 13317189 -88555980 + L1ME4a LINE L1 5518 5591 -530 728 267 67 51 chr13 13317290 13317646 -88555523 - MER83C LTR ERV1 -10 363 2 358 211 196 31 chr13 13317670 13317864 -88555305 + L1ME4a LINE L1 5725 5950 -171 1166 40 213 35 chr13 13317890 13318064 -88555105 + AluY SINE Alu 1 205 -106 206 276 86 31 chr13 13318371 13318534 -88554635 - L2 LINE L2 -38 3275 3104 1337 259 144 17 chr13 13318597 13319309 -88553860 - L2 LINE L2 -185 3128 2346 5535 30 3 0 chr13 13319798 13320438 -88552731 + L1PA4 LINE L1 5514 6155 0 2481 80 0 6 chr13 13320456 13320769 -88552400 + AluSp SINE Alu 3 313 0 792 262 83 49 chr13 13321734 13322268 -88550901 - MLT1L LTR MaLR -1 614 26 2791 128 17 7 chr13 13322268 13322690 -88550479 + MSTB LTR MaLR 1 426 0 792 262 83 49 chr13 13322690 13322714 -88550455 - MLT1L LTR MaLR -589 26 4 1057 276 72 21 chr13 13322716 13323144 -88550025 + L2 LINE L2 2030 2479 -835 212 185 0 56 chr13 13323204 13323258 -88549911 + L2 LINE L2 3263 3313 0 322 226 57 48 chr13 13323731 13323855 -88549314 - MLT1H LTR MaLR -2 547 423 501 265 80 33 chr13 13323978 13324170 -88548999 - MLT1H LTR MaLR -339 210 22 214 262 0 0 chr13 13324491 13324533 -88548636 + polypurine Low_complexity Low_complexity 2 43 0 376 274 10 0 chr13 13325780 13325882 -88547287 - MIR3 SINE MIR -38 170 68 276 315 79 45 chr13 13327735 13327853 -88545316 - MIR3 SINE MIR -21 187 60 1439 218 44 7 chr13 13327853 13328151 -88545018 + AluJb SINE Alu 1 309 -3 276 315 79 45 chr13 13328151 13328210 -88544959 - MIR3 SINE MIR -148 60 4 362 284 43 35 chr13 13328877 13329018 -88544151 - MIR SINE MIR -1 261 120 2427 80 0 3 chr13 13329401 13329702 -88543467 + AluSc SINE Alu 1 300 -9 710 219 89 33 chr13 13329998 13330191 -88542978 - MLT1D LTR MaLR 0 505 324 6747 112 62 68 chr13 13330191 13331474 -88541695 + MER52C LTR ERV1 1 1276 -2 710 219 89 33 chr13 13331474 13331668 -88541501 - MLT1D LTR MaLR -181 324 27 312 298 25 0 chr13 13332875 13332996 -88540173 + MER117 DNA MER1_type 39 162 -35 1114 185 177 48 chr13 13333872 13334251 -88538918 - MSTC LTR MaLR 0 428 1 881 251 98 4 chr13 13334254 13334529 -88538640 + L2 LINE L2 1921 2221 -1093 365 306 161 25 chr13 13334833 13335032 -88538137 + HAL1b LINE L1 1110 1335 -13 2485 52 0 3 chr13 13335889 13336199 -88536970 - AluY SINE Alu -1 310 2 693 185 0 15 chr13 13337047 13337182 -88535987 - FLAM_A SINE Alu 0 133 1 360 280 133 14 chr13 13338414 13338557 -88534612 - L2 LINE L2 -120 3152 2993 1364 150 65 56 chr13 13339214 13339372 -88533797 - L1MA10 LINE L1 -1 6333 6169 378 0 0 0 chr13 13339372 13339414 -88533755 + (TG)n Simple_repeat Simple_repeat 2 43 0 1364 150 65 56 chr13 13339414 13339561 -88533608 - L1MA10 LINE L1 -165 6169 6025 1141 119 0 0 chr13 13339551 13339719 -88533450 + L1M3 LINE L1 5573 5740 -594 * 225 292 180 0 chr13 13340571 13340660 -88532509 - MIR3 SINE MIR -6 202 98 * 266 313 14 61 chr13 13340658 13340805 -88532364 - L2 LINE L2 -1 3271 3132 231 324 14 27 chr13 13341036 13341110 -88532059 - L2 LINE L2 0 3272 3200 465 237 90 34 chr13 13341161 13341338 -88531831 - MER112 DNA MER1_type -8 252 66 245 227 17 62 chr13 13341506 13341645 -88531524 - MLT1I LTR MaLR 0 577 348 373 252 111 75 chr13 13341670 13341896 -88531273 - MLT1H LTR MaLR -207 342 109 441 264 62 0 chr13 13342334 13342463 -88530706 + MIR3 SINE MIR 60 196 -12 880 228 53 15 chr13 13343190 13343396 -88529773 + MIR SINE MIR 47 260 -2 1975 84 29 0 chr13 13345587 13345898 -88527271 - AluY SINE Alu 0 319 1 2248 98 3 0 chr13 13347901 13348206 -88524963 + AluSp SINE Alu 1 306 -7 24 0 0 0 chr13 13348365 13348389 -88524780 + AT_rich Low_complexity Low_complexity 1 24 0 2201 136 25 17 chr13 13348667 13349028 -88524141 - MLT1A1 LTR MaLR 0 365 2 941 73 0 7 chr13 13349199 13349335 -88523834 + (TTCC)n Simple_repeat Simple_repeat 2 136 0 410 285 38 38 chr13 13349440 13349626 -88523543 - L2 LINE L2 -183 3089 2904 488 341 49 31 chr13 13349774 13349997 -88523172 - MIR SINE MIR -10 252 26 1587 273 50 0 chr13 13349997 13350393 -88522776 - MLT1J LTR MaLR 0 511 96 236 362 101 29 chr13 13350746 13350884 -88522285 + L2 LINE L2 3121 3268 -4 622 317 53 15 chr13 13351676 13351941 -88521228 - L3 LINE CR1 -1 1576 1302 1967 247 112 17 chr13 13351941 13352004 -88521165 - MLT1E LTR MaLR 0 593 537 1687 125 8 4 chr13 13352004 13352252 -88520917 - AluSq SINE Alu -17 296 48 1967 247 112 17 chr13 13352252 13352723 -88520446 - MLT1E LTR MaLR -56 537 8 225 344 44 0 chr13 13352728 13352818 -88520351 - L3 LINE CR1 -270 1307 1214 1872 148 10 6 chr13 13353852 13354163 -88519006 + AluSx SINE Alu 1 312 0 545 284 16 31 chr13 13354434 13354596 -88518573 + MIR SINE MIR 30 187 -62 340 314 152 0 chr13 13355589 13355694 -88517475 - L2 LINE L2 -1 3271 3151 1895 135 3 25 chr13 13356055 13356373 -88516796 + AluSx SINE Alu 1 311 -1 430 288 131 49 chr13 13356532 13356838 -88516331 + MARNA DNA Mariner 125 455 -131 28 0 0 0 chr13 13356987 13357015 -88516154 + AT_rich Low_complexity Low_complexity 1 28 0 39 95 0 0 chr13 13357292 13357408 -88515761 + AT_rich Low_complexity Low_complexity 1 116 0 458 289 21 7 chr13 13357905 13358047 -88515122 - MIR SINE MIR 0 262 119 207 107 0 0 chr13 13358945 13358973 -88514196 - MIR SINE MIR -9 253 226 198 339 62 0 chr13 13358947 13359012 -88514157 - L2 LINE L2 -17 3255 3187 * 220 301 27 14 chr13 13359219 13359292 -88513877 + L2 LINE L2 3234 3307 -6 387 0 0 0 chr13 13359579 13359622 -88513547 + (CCCTG)n Simple_repeat Simple_repeat 1 43 0 237 336 21 21 chr13 13359964 13360104 -88513065 + MIR SINE MIR 50 189 -73 386 298 161 53 chr13 13360243 13360659 -88512510 + L2 LINE L2 2811 3271 -1 353 240 140 33 chr13 13360707 13360857 -88512312 + MIR SINE MIR 97 262 0 815 254 30 0 chr13 13361066 13361263 -88511906 - MLT1B LTR MaLR 0 390 188 545 216 85 51 chr13 13361292 13361468 -88511701 - MLT1B LTR MaLR -186 188 7 455 177 10 0 chr13 13361719 13361815 -88511354 + CT-rich Low_complexity Low_complexity 3 99 0 370 242 194 16 chr13 13363376 13363500 -88509669 + MIR SINE MIR 117 262 0 1160 280 223 24 chr13 13364072 13364993 -88508176 + L2 LINE L2 1233 2336 -978 199 339 17 35 chr13 13365170 13365285 -88507884 + L2 LINE L2 2992 3104 -168 311 265 30 90 chr13 13365337 13365537 -88507632 - L2 LINE L2 -3 3310 3123 242 33 0 0 chr13 13365572 13365602 -88507567 + MADE1 DNA Mariner 1 30 -50 390 253 48 89 chr13 13365678 13365947 -88507222 - L2 LINE L2 -142 3171 2914 271 310 69 37 chr13 13366422 13366638 -88506531 + L2 LINE L2 2301 2523 -791 203 200 108 46 chr13 13368161 13368226 -88504943 - L3 LINE CR1 -129 1448 1380 822 241 58 75 chr13 13368810 13369105 -88504064 + L2 LINE L2 3024 3313 0 1892 145 47 33 chr13 13369274 13369633 -88503536 - THE1B LTR MaLR 0 364 1 252 356 63 23 chr13 13370308 13370482 -88502687 - L2 LINE L2 -30 3283 3103 3449 264 60 54 chr13 13370645 13370958 -88502211 - L2 LINE L2 -1341 1973 1663 1639 174 6 25 chr13 13370958 13371275 -88501894 - AluJo SINE Alu -1 311 1 3449 264 60 54 chr13 13371275 13372305 -88500864 - L2 LINE L2 -1651 1663 623 328 307 111 33 chr13 13372677 13372904 -88500265 + L1M4 LINE L1 4477 4685 -1461 1573 174 0 27 chr13 13372904 13373198 -88499971 + AluJo SINE Alu 5 290 -22 328 307 111 33 chr13 13373198 13373521 -88499648 + L1M4 LINE L1 4685 5070 -1076 288 137 0 0 chr13 13373790 13373841 -88499328 + (TA)n Simple_repeat Simple_repeat 1 51 0 366 33 50 0 chr13 13374962 13375022 -88498147 + (CA)n Simple_repeat Simple_repeat 1 63 0 522 259 49 27 chr13 13375368 13375553 -88497616 - MIR SINE MIR -72 190 2 1815 137 0 20 chr13 13375773 13376065 -88497104 + AluJo SINE Alu 11 296 -16 613 239 7 0 chr13 13377758 13377896 -88495273 + MER105 DNA DNA 46 184 -20 186 103 0 0 chr13 13379126 13379155 -88494014 + (CTG)n Simple_repeat Simple_repeat 3 31 0 192 167 167 0 chr13 13380253 13380307 -88492862 + MIR3 SINE MIR 105 167 -41 182 309 0 0 chr13 13380925 13380967 -88492202 - L2 LINE L2 -20 3252 3211 811 230 9 71 chr13 13381836 13382062 -88491107 + MIR SINE MIR 26 237 -25 813 256 242 3 chr13 13383048 13383411 -88489758 - MLT1J2 LTR MaLR 0 450 1 1386 158 57 73 chr13 13383541 13383857 -88489312 - AluJo SINE Alu -1 311 1 441 260 6 18 chr13 13386364 13386533 -88486636 + (CA)n Simple_repeat Simple_repeat 1 167 0 437 294 0 27 chr13 13386733 13387108 -88486061 + (CA)n Simple_repeat Simple_repeat 1 364 0 331 326 0 11 chr13 13387227 13387402 -88485767 + (CA)n Simple_repeat Simple_repeat 1 173 0 459 264 0 16 chr13 13387414 13387596 -88485573 + (CA)n Simple_repeat Simple_repeat 1 179 0 392 283 0 23 chr13 13387638 13387815 -88485354 + (CA)n Simple_repeat Simple_repeat 2 174 0 197 206 0 14 chr13 13387859 13387932 -88485237 + (CA)n Simple_repeat Simple_repeat 1 72 0 234 283 0 22 chr13 13387945 13388037 -88485132 + (CA)n Simple_repeat Simple_repeat 1 90 0 680 239 147 38 chr13 13389578 13389892 -88483277 - MER7A DNA MER2_type 0 346 1 1166 274 65 45 chr13 13390121 13390653 -88482516 - L2 LINE L2 -5 3308 2774 190 321 60 12 chr13 13390758 13390842 -88482327 + L2 LINE L2 2758 2845 -469 422 174 60 0 chr13 13391197 13391364 -88481805 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 330 294 101 17 chr13 13392017 13392136 -88481033 - L3 LINE CR1 -313 1264 1136 924 286 42 18 chr13 13392224 13392560 -88480609 - L3 LINE CR1 -694 883 540 279 0 0 0 chr13 13392764 13392795 -88480374 + (CA)n Simple_repeat Simple_repeat 2 32 0 413 227 160 0 chr13 13393202 13393321 -88479848 + FLAM_C SINE Alu 6 143 0 2271 105 0 6 chr13 13394630 13394944 -88478225 + AluSx SINE Alu 1 312 0 865 173 41 119 chr13 13395345 13395496 -88477673 + MIR SINE MIR 39 165 -97 1805 153 0 14 chr13 13395496 13395791 -88477378 + AluSx SINE Alu 1 291 -21 865 173 41 119 chr13 13395791 13395882 -88477287 + MIR SINE MIR 165 262 0 433 292 77 29 chr13 13395893 13396102 -88477067 - MLT1L LTR MaLR -47 568 350 203 147 0 0 chr13 13396151 13396185 -88476984 + (CA)n Simple_repeat Simple_repeat 1 34 0 336 208 58 83 chr13 13396185 13396305 -88476864 - MLT1L LTR MaLR -292 323 207 1324 216 83 18 chr13 13397176 13397454 -88475715 + AluJo SINE Alu 5 300 -2 352 315 50 87 chr13 13398100 13398398 -88474771 + HAL1 LINE L1 1016 1302 -1205 498 191 111 0 chr13 13398467 13398593 -88474576 - L1MB7 LINE L1 -12 6172 6033 857 107 0 8 chr13 13398601 13398722 -88474447 - FLAM_C SINE Alu -23 120 1 552 273 0 27 chr13 13400295 13400445 -88472724 - MIR SINE MIR -20 242 97 291 199 16 31 chr13 13400482 13400572 -88472597 - MLT1K LTR MaLR -30 579 498 217 267 67 29 chr13 13400865 13400970 -88472199 - MIR SINE MIR -138 124 16 * 346 262 0 0 chr13 13400969 13401053 -88472116 + MER5A DNA MER1_type 22 105 -84 656 256 79 0 chr13 13401341 13401505 -88471664 - MER5B DNA MER1_type 0 178 2 338 260 13 13 chr13 13401511 13401588 -88471581 + MER5B DNA MER1_type 101 177 -1 * 502 310 53 11 chr13 13401588 13401774 -88471395 - MIR SINE MIR -58 204 11 186 103 0 0 chr13 13402007 13402036 -88471133 + (CAG)n Simple_repeat Simple_repeat 2 30 0 288 279 200 21 chr13 13402925 13403065 -88470104 + MIR3 SINE MIR 23 187 -21 238 205 0 0 chr13 13403254 13403293 -88469876 - MIR SINE MIR -14 248 210 2890 264 113 21 chr13 13403316 13404752 -88468417 + L2 LINE L2 1762 3310 -3 2005 110 205 6 chr13 13404896 13405252 -88467917 + MSTA LTR MaLR 2 428 0 2336 180 21 2 chr13 13406805 13407227 -88465942 + MSTB1 LTR MaLR 1 430 -2 2381 70 0 0 chr13 13407352 13407651 -88465518 - AluY SINE Alu -12 299 1 21 0 0 0 chr13 13407836 13407857 -88465312 + AT_rich Low_complexity Low_complexity 1 21 0 1704 163 3 14 chr13 13407857 13408146 -88465023 - AluJo SINE Alu -26 286 1 267 326 202 5 chr13 13408644 13408837 -88464332 + MIR SINE MIR 22 252 -10 2168 112 0 10 chr13 13409636 13409950 -88463219 + AluSx SINE Alu 1 311 -1 731 187 8 0 chr13 13410163 13410428 -88462741 + AluSg/x SINE Alu 178 443 0 308 259 152 13 chr13 13410643 13410754 -88462415 - MIR SINE MIR -45 163 45 330 314 42 17 chr13 13411026 13411144 -88462025 + MIR SINE MIR 117 237 -25 1683 158 37 72 chr13 13412623 13413027 -88460142 + MLT1B LTR MaLR 1 390 0 1035 275 59 53 chr13 13413074 13413791 -88459378 - L2 LINE L2 0 3313 2534 906 259 50 4 chr13 13413791 13414030 -88459139 + MER46C DNA MER2_type 1 250 -88 3431 231 85 18 chr13 13414176 13415269 -88457900 + L1MB7 LINE L1 2945 4110 -2036 207 0 0 0 chr13 13415276 13415299 -88457870 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1173 140 0 0 chr13 13415301 13415487 -88457682 - L1 LINE L1 -851 5295 5110 * 4411 160 46 4 chr13 13415482 13416305 -88456864 + L1MB7 LINE L1 5258 6115 -69 635 238 290 3 chr13 13416317 13416603 -88456566 - L2 LINE L2 -824 2490 2123 521 244 174 40 chr13 13417430 13417729 -88455440 - MLT1J2 LTR MaLR 0 450 112 229 328 40 40 chr13 13417813 13417938 -88455231 + MIR SINE MIR 8 132 -130 368 298 136 35 chr13 13419161 13419292 -88453877 + MIR SINE MIR 31 190 -72 2450 196 13 9 chr13 13419292 13419756 -88453413 - MLT1C LTR MaLR -1 466 1 368 298 136 35 chr13 13419756 13419822 -88453347 + MIR SINE MIR 190 248 -14 180 0 0 0 chr13 13420004 13420024 -88453145 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2070 112 14 0 chr13 13420030 13420324 -88452845 - AluSx SINE Alu -14 298 1 621 211 113 56 chr13 13420347 13420560 -88452609 - MIR SINE MIR -27 235 11 1917 13 105 4 chr13 13420637 13420876 -88452293 + AluYa5 SINE Alu 49 311 0 315 273 87 40 chr13 13422245 13422395 -88450774 - MIR3 SINE MIR -46 162 6 229 214 35 28 chr13 13423481 13423553 -88449616 + MIR SINE MIR 58 148 -60 2519 39 3 0 chr13 13423729 13424037 -88449132 - AluY SINE Alu -2 309 1 493 270 26 0 chr13 13424753 13424868 -88448301 - MIR SINE MIR -61 201 84 351 254 0 0 chr13 13425957 13426024 -88447145 - MER2 DNA MER2_type 0 345 279 604 194 19 0 chr13 13426093 13426201 -88446968 - MER2 DNA MER2_type -226 119 10 2964 162 59 67 chr13 13426567 13427264 -88445905 - LTR8 LTR ERV1 0 691 1 235 313 0 0 chr13 13427387 13427451 -88445718 + L2 LINE L2 2997 3060 -253 2176 68 31 3 chr13 13427674 13427966 -88445203 - AluY SINE Alu -11 300 1 23 33 0 0 chr13 13428277 13428307 -88444862 + AT_rich Low_complexity Low_complexity 1 30 0 3254 177 77 22 chr13 13428907 13429596 -88443573 - LTR8A LTR ERV1 0 727 1 1038 113 0 13 chr13 13429999 13430150 -88443019 - LOR1a LTR ERV1 0 497 349 3973 103 13 14 chr13 13430155 13430589 -88442580 + MER41A LTR ERV1 1 435 -119 1996 68 23 0 chr13 13430589 13430852 -88442317 - AluY SINE Alu -10 301 33 3973 103 13 14 chr13 13430852 13430972 -88442197 + MER41A LTR ERV1 435 554 0 412 105 13 66 chr13 13430972 13431048 -88442121 + MER41A-int LTR ERV1 1 72 -5874 2053 123 3 0 chr13 13431240 13431541 -88441628 - AluSx SINE Alu -10 302 1 1766 135 8 0 chr13 13432500 13432767 -88440402 + AluSq SINE Alu 1 269 -44 1889 148 0 16 chr13 13434396 13434700 -88438469 + AluJb SINE Alu 3 301 -11 501 254 27 0 chr13 13434772 13434882 -88438287 + L2 LINE L2 3189 3301 -12 417 338 42 7 chr13 13434880 13435022 -88438147 - L2 LINE L2 -5 3308 3162 * 248 282 129 45 chr13 13435108 13435310 -88437859 - L2 LINE L2 -1 3312 3094 1463 184 19 8 chr13 13435479 13435745 -88437424 - MLT1A2 LTR MaLR -105 269 1 2074 122 0 0 chr13 13436172 13436468 -88436701 - AluSq SINE Alu -17 296 1 216 97 0 0 chr13 13437571 13437602 -88435567 + (T)n Simple_repeat Simple_repeat 1 31 0 341 242 15 0 chr13 13437651 13437717 -88435452 - L2 LINE L2 0 3272 3206 2006 115 18 0 chr13 13438505 13438791 -88434378 + AluSx SINE Alu 1 291 -21 192 265 48 72 chr13 13438806 13438889 -88434280 - L2 LINE L2 -1865 1449 1369 476 270 38 25 chr13 13439471 13439630 -88433539 - MIR SINE MIR 0 262 102 237 299 103 17 chr13 13439739 13439856 -88433313 - MIR SINE MIR -75 187 61 414 252 53 30 chr13 13440167 13440298 -88432871 + MIR SINE MIR 17 150 -112 300 266 37 46 chr13 13440358 13440467 -88432702 + L2 LINE L2 3204 3311 -2 745 254 49 15 chr13 13440536 13440741 -88432428 - MLT1A2 LTR MaLR 0 374 163 259 305 93 25 chr13 13441039 13441157 -88432012 - L2 LINE L2 -5 3267 3142 294 278 14 0 chr13 13441524 13441596 -88431573 + MIR SINE MIR 81 153 -109 200 305 43 14 chr13 13442599 13442740 -88430429 - MIR3 SINE MIR -7 201 57 873 295 67 14 chr13 13444194 13444624 -88428545 + L1ME4a LINE L1 5479 5931 -190 21 57 0 0 chr13 13444787 13444822 -88428347 + AT_rich Low_complexity Low_complexity 1 35 0 227 31 31 0 chr13 13445008 13445040 -88428129 + (CA)n Simple_repeat Simple_repeat 2 34 0 1532 208 23 26 chr13 13446514 13446861 -88426308 - MLT1A2 LTR MaLR -4 370 25 193 222 0 25 chr13 13448722 13448803 -88424366 + GA-rich Low_complexity Low_complexity 4 82 0 267 309 0 0 chr13 13449197 13449252 -88423917 + L3 LINE CR1 1508 1562 -15 * 274 212 15 15 chr13 13449203 13449269 -88423900 + MIR3 SINE MIR 140 205 -3 276 241 0 0 chr13 13450246 13450300 -88422869 + Tigger3(Golem) DNA MER2_type 2947 3000 -29 21 0 0 0 chr13 13450702 13450723 -88422446 + AT_rich Low_complexity Low_complexity 1 21 0 498 221 44 22 chr13 13451218 13451354 -88421815 - MIR SINE MIR -75 187 49 275 271 206 42 chr13 13451969 13452183 -88420986 - L2 LINE L2 -47 3225 2977 1511 139 60 4 chr13 13452183 13452449 -88420720 + L1MB3 LINE L1 5808 6088 -95 1735 153 0 4 chr13 13452571 13452839 -88420330 - AluSg SINE Alu -43 267 1 568 244 158 24 chr13 13453830 13454039 -88419130 - MIR SINE MIR -18 244 8 337 220 84 21 chr13 13454178 13454310 -88418859 - MIR SINE MIR -36 226 82 887 278 80 49 chr13 13454530 13454980 -88418189 + MER115 DNA AcHobo 114 577 -116 226 291 76 48 chr13 13455065 13455316 -88417853 - MLT1K LTR MaLR -148 440 183 634 167 7 7 chr13 13455524 13455662 -88417507 + CT-rich Low_complexity Low_complexity 4 141 0 217 274 126 0 chr13 13455713 13455808 -88417361 + MIR SINE MIR 42 148 -60 509 246 87 0 chr13 13456429 13456567 -88416602 + MER103 DNA DNA 2 151 -15 255 290 97 39 chr13 13456726 13456881 -88416288 - MIR SINE MIR -39 223 60 220 33 0 0 chr13 13456908 13456938 -88416231 - MIR SINE MIR -126 136 107 1606 191 118 27 chr13 13458353 13458792 -88414377 + MLT1D LTR MaLR 9 373 -1 283 316 91 74 chr13 13458859 13459156 -88414013 - L2 LINE L2 0 3272 2971 225 65 0 0 chr13 13459177 13459208 -88413961 + (TG)n Simple_repeat Simple_repeat 1 31 0 2748 95 0 8 chr13 13459951 13460318 -88412851 + THE1B LTR MaLR 1 364 0 303 278 62 21 chr13 13460925 13461022 -88412147 - L2 LINE L2 -4 3309 3209 258 271 218 24 chr13 13462859 13463029 -88410140 + L1MC4 LINE L1 7637 7839 -203 360 339 144 10 chr13 13463626 13463821 -88409348 - MIR SINE MIR -13 249 29 710 212 73 20 chr13 13464480 13464631 -88408538 + MER5B DNA MER1_type 17 175 -3 1932 107 9 63 chr13 13464801 13465120 -88408049 + AluSx SINE Alu 1 302 -10 24 32 0 0 chr13 13465167 13465198 -88407971 + AT_rich Low_complexity Low_complexity 1 31 0 258 244 13 64 chr13 13465543 13465621 -88407548 + MIR SINE MIR 118 191 -71 994 147 32 0 chr13 13465737 13465893 -88407276 + MER20 DNA MER1_type 57 217 -2 878 142 0 8 chr13 13467739 13467873 -88405296 + FLAM_C SINE Alu 1 133 0 255 231 33 11 chr13 13468390 13468481 -88404688 + (CCG)n Simple_repeat Simple_repeat 3 95 0 25 31 0 0 chr13 13469048 13469080 -88404089 + AT_rich Low_complexity Low_complexity 1 32 0 195 276 35 35 chr13 13469399 13469457 -88403712 - L2 LINE L2 -19 3294 3237 304 301 93 98 chr13 13470857 13471245 -88401924 - L2 LINE L2 -1 3271 2886 1998 133 0 0 chr13 13471908 13472201 -88400968 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr13 13472201 13472223 -88400946 + (TA)n Simple_repeat Simple_repeat 2 23 0 293 224 47 129 chr13 13473483 13473536 -88399633 - MIR SINE MIR -6 256 200 2407 4 0 0 chr13 13473536 13473803 -88399366 - AluYa5 SINE Alu -6 305 39 293 224 47 129 chr13 13473803 13473919 -88399250 - MIR SINE MIR -62 200 101 258 302 195 44 chr13 13474205 13474364 -88398805 - MIR SINE MIR 0 262 80 3165 203 77 16 chr13 13474368 13475117 -88398052 + Charlie1a DNA MER1_type 29 823 -632 1746 138 91 13 chr13 13475115 13475498 -88397671 + Charlie1a DNA MER1_type 1041 1453 -2 * 369 267 78 89 chr13 13475712 13475993 -88397176 - MLT1I LTR MaLR -12 397 120 3943 86 40 100 chr13 13476045 13476718 -88396451 - MER51A LTR ERV1 -1 633 1 206 257 86 43 chr13 13476793 13476863 -88396306 - L2 LINE L2 -44 3228 3156 282 376 138 18 chr13 13478005 13478555 -88394614 - L2 LINE L2 -477 2837 2222 2866 212 61 56 chr13 13478710 13479122 -88394047 - MER21B LTR ERV1 -124 739 320 1882 141 0 16 chr13 13479122 13479428 -88393741 - AluSq SINE Alu -6 307 7 2866 212 61 56 chr13 13479428 13479750 -88393419 - MER21B LTR ERV1 -543 320 1 648 257 123 11 chr13 13479863 13480050 -88393119 + LTR67 LTR ERVL 4 211 -346 466 209 120 100 chr13 13480076 13480335 -88392834 + LTR67 LTR ERVL 282 545 -12 2275 85 0 19 chr13 13480996 13481312 -88391857 - AluSg SINE Alu 0 310 1 1912 116 29 0 chr13 13481900 13482207 -88390962 - AluSx SINE Alu 0 315 1 576 304 19 5 chr13 13483780 13484038 -88389131 - MLT1I LTR MaLR -27 382 85 604 294 165 3 chr13 13484224 13484540 -88388629 - MLT1I LTR MaLR -14 395 29 1328 165 11 26 chr13 13484569 13484842 -88388327 - AluJb SINE Alu -24 288 20 4105 113 118 112 chr13 13484843 13486218 -88386951 + pTR5 LTR ERV1 79 2438 0 249 88 0 0 chr13 13486218 13486252 -88386917 - AluJb SINE Alu -268 34 1 468 244 67 0 chr13 13486769 13486868 -88386301 - ORSL DNA AcHobo 0 275 165 2183 115 3 0 chr13 13486868 13487164 -88386005 + AluSp SINE Alu 1 297 -16 468 244 67 0 chr13 13487164 13487183 -88385986 - ORSL DNA AcHobo -110 165 149 1911 116 9 104 chr13 13487183 13487377 -88385792 - AluSx SINE Alu -6 296 144 2296 90 0 0 chr13 13487377 13487665 -88385504 - AluSx SINE Alu -24 288 1 1911 116 9 104 chr13 13487665 13487797 -88385372 - AluSx SINE Alu -158 144 1 257 294 0 15 chr13 13488292 13488360 -88384809 - ORSL DNA AcHobo 0 275 209 2452 75 10 0 chr13 13488392 13488697 -88384472 + AluY SINE Alu 1 308 -3 846 263 134 15 chr13 13488708 13489043 -88384126 - MER57B LTR ERV1 -4 430 56 948 168 80 58 chr13 13489605 13489702 -88383467 + MER33 DNA MER1_type 41 134 -2451 1817 126 14 18 chr13 13489702 13489980 -88383189 + AluSx SINE Alu 1 277 -35 342 0 0 0 chr13 13489986 13490024 -88383145 + (TA)n Simple_repeat Simple_repeat 1 38 0 948 168 80 58 chr13 13490024 13490193 -88382976 + MER33 DNA MER1_type 138 320 -4 897 133 6 3 chr13 13490217 13490374 -88382795 - LTR12 LTR ERV1 0 714 368 4711 111 49 35 chr13 13490374 13491051 -88382118 - LTR12 LTR ERV1 -2 686 1 786 288 89 41 chr13 13491054 13491514 -88381655 + L2 LINE L2 2722 3203 -110 2136 153 110 5 chr13 13491514 13491905 -88381264 - MSTB1 LTR MaLR 0 432 1 786 288 89 41 chr13 13491905 13492022 -88381147 + L2 LINE L2 3203 3313 0 2306 82 0 26 chr13 13492992 13493298 -88379871 - AluY SINE Alu -13 298 1 484 273 76 29 chr13 13493536 13493708 -88379461 + MIR SINE MIR 60 239 -23 687 244 78 116 chr13 13493899 13493918 -88379251 + MLT1K LTR MaLR 308 326 -262 2234 105 10 0 chr13 13493918 13494212 -88378957 - AluSx SINE Alu -15 297 1 687 244 78 116 chr13 13494212 13494512 -88378657 + MLT1K LTR MaLR 326 588 0 233 184 0 0 chr13 13494969 13495007 -88378162 + L1 LINE L1 4113 4150 -1996 377 297 36 10 chr13 13495831 13495974 -88377195 - MIR SINE MIR -65 143 2 270 268 118 77 chr13 13496666 13496774 -88376395 - MIR SINE MIR 0 262 160 2507 63 3 0 chr13 13496774 13497076 -88376093 - AluSq SINE Alu -10 303 1 270 268 118 77 chr13 13497076 13497187 -88375982 - MIR SINE MIR -102 160 34 251 281 73 0 chr13 13497294 13497376 -88375793 + L2 LINE L2 3160 3247 -25 2223 160 104 18 chr13 13497587 13498078 -88375091 - MER51A LTR ERV1 0 634 90 2127 111 37 3 chr13 13498573 13498907 -88374262 + AluSc SINE Alu 1 344 0 182 180 40 0 chr13 13498986 13499036 -88374133 + GA-rich Low_complexity Low_complexity 2 53 0 2415 94 0 0 chr13 13499349 13499648 -88373521 - AluSc SINE Alu -5 304 6 2199 116 0 3 chr13 13501544 13501845 -88371324 + AluSg SINE Alu 1 300 -10 689 165 36 173 chr13 13502177 13502425 -88370744 + MER20 DNA MER1_type 6 219 0 242 273 211 25 chr13 13502463 13502567 -88370602 - L2 LINE L2 0 3313 3230 288 0 0 0 chr13 13502567 13502599 -88370570 + (CA)n Simple_repeat Simple_repeat 2 33 0 242 273 211 25 chr13 13502599 13502736 -88370433 - L2 LINE L2 -83 3230 3027 333 240 48 40 chr13 13502737 13502862 -88370307 - MLT1L LTR MaLR -14 601 476 423 272 23 46 chr13 13503069 13503242 -88369927 - MLT1K LTR MaLR -340 248 80 206 219 76 129 chr13 13503251 13503461 -88369708 - L2 LINE L2 -253 3060 2862 28 48 0 0 chr13 13504322 13504364 -88368805 + AT_rich Low_complexity Low_complexity 1 42 0 558 234 0 0 chr13 13504389 13504496 -88368673 - FLAM_A SINE Alu -35 107 1 990 175 0 0 chr13 13504505 13504665 -88368504 - FRAM SINE Alu -16 160 1 291 231 130 28 chr13 13504881 13504989 -88368180 - MIR SINE MIR -60 202 84 348 278 0 37 chr13 13505063 13505171 -88367998 - MIR SINE MIR -140 122 19 317 203 139 0 chr13 13505482 13505561 -88367608 - MIR SINE MIR -83 179 90 2404 89 7 0 chr13 13510249 13510552 -88362617 - AluSg SINE Alu -5 305 1 675 228 100 58 chr13 13510766 13511077 -88362092 + MER33 DNA MER1_type 1 324 0 1107 153 0 0 chr13 13512244 13512407 -88360762 - AluSp SINE Alu -16 297 135 2568 47 0 0 chr13 13512418 13512714 -88360455 - AluY SINE Alu -15 296 1 229 247 45 0 chr13 13513853 13513942 -88359227 + CT-rich Low_complexity Low_complexity 1 93 0 737 177 9 0 chr13 13518239 13518352 -88354817 + FRAM SINE Alu 6 119 -57 189 0 0 0 chr13 13519499 13519520 -88353649 + (A)n Simple_repeat Simple_repeat 1 21 0 314 222 244 22 chr13 13522026 13522116 -88351053 - MIR SINE MIR -141 121 12 1635 132 24 68 chr13 13522635 13522930 -88350239 - AluJo SINE Alu -30 282 1 215 198 221 58 chr13 13524928 13525014 -88348155 + MIR SINE MIR 32 131 -77 315 71 0 0 chr13 13525428 13525470 -88347699 + (TG)n Simple_repeat Simple_repeat 1 42 0 26 64 0 0 chr13 13528310 13528357 -88344812 + AT_rich Low_complexity Low_complexity 1 47 0 495 283 111 25 chr13 13529047 13529245 -88343924 - L2 LINE L2 0 3313 3099 406 274 149 6 chr13 13529372 13529540 -88343629 + MIR SINE MIR 40 231 -31 291 273 129 22 chr13 13530760 13530899 -88342270 - L1ME4a LINE L1 0 6121 5968 285 184 75 20 chr13 13531026 13531120 -88342049 - L1ME4a LINE L1 -323 5798 5695 267 252 15 7 chr13 13531739 13531825 -88341344 + A-rich Low_complexity Low_complexity 1 86 0 22 80 0 0 chr13 13531899 13531949 -88341220 + GC_rich Low_complexity Low_complexity 1 50 0 24 96 0 0 chr13 13532181 13532254 -88340915 + GC_rich Low_complexity Low_complexity 1 73 0 220 282 141 28 chr13 13533960 13534102 -88339067 + MIR3 SINE MIR 37 194 -14 543 246 20 80 chr13 13534387 13534586 -88338583 + MLT1J LTR MaLR 241 427 -84 267 279 130 72 chr13 13535590 13535830 -88337339 - L2 LINE L2 -2 3311 3086 918 171 42 65 chr13 13535830 13536047 -88337122 + MER20 DNA MER1_type 4 215 -4 267 279 130 72 chr13 13536047 13536581 -88336588 - L2 LINE L2 -227 3086 2380 320 212 20 10 chr13 13536581 13536680 -88336489 - L1MB3 LINE L1 -3 6180 6081 267 279 130 72 chr13 13536680 13536864 -88336305 - L2 LINE L2 -933 2380 2208 641 197 0 95 chr13 13536880 13536911 -88336258 - FLAM_A SINE Alu -169 133 101 2127 131 0 7 chr13 13536911 13537209 -88335960 + AluSx SINE Alu 1 296 -16 641 197 0 95 chr13 13537209 13537324 -88335845 - FLAM_A SINE Alu -201 101 1 204 40 0 0 chr13 13537489 13537514 -88335655 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 421 229 39 120 chr13 13537843 13538011 -88335158 - MER5A DNA MER1_type 0 189 1 2016 81 57 50 chr13 13538097 13538394 -88334775 + AluSg SINE Alu 3 301 -9 414 242 288 0 chr13 13539557 13539710 -88333459 - MIR SINE MIR -26 236 40 1451 165 66 53 chr13 13542376 13542679 -88330490 - AluJo SINE Alu -5 307 1 2155 114 7 7 chr13 13542749 13543047 -88330122 + AluSx SINE Alu 1 298 -14 1464 182 40 47 chr13 13543746 13543904 -88329265 - AluJo SINE Alu -16 296 139 2396 95 0 0 chr13 13543904 13544209 -88328960 - AluSg SINE Alu -5 305 1 1464 182 40 47 chr13 13544209 13544346 -88328823 - AluJo SINE Alu -173 139 3 294 143 0 0 chr13 13544655 13544704 -88328465 + (TG)n Simple_repeat Simple_repeat 2 50 0 278 241 60 24 chr13 13544854 13544937 -88328232 - L2 LINE L2 0 3272 3187 1806 168 10 0 chr13 13544949 13545241 -88327928 + AluJb SINE Alu 6 300 -12 475 250 64 29 chr13 13545388 13545560 -88327609 - L2 LINE L2 -94 3219 3042 2331 100 0 0 chr13 13547146 13547446 -88325723 - AluSx SINE Alu -12 300 1 288 303 57 0 chr13 13547988 13548110 -88325059 - MIR SINE MIR -50 212 84 333 111 0 0 chr13 13548115 13548169 -88325000 - L1PA15 LINE L1 0 6165 6112 7577 171 39 10 chr13 13548175 13549920 -88323249 - L1PA15 LINE L1 -2 6163 4354 2197 117 13 0 chr13 13549920 13550218 -88322951 - AluSq SINE Alu -11 302 1 7577 171 39 10 chr13 13550218 13550706 -88322463 - L1PA15 LINE L1 -1811 4354 3882 1929 183 14 3 chr13 13550706 13551061 -88322108 + L1PA15 LINE L1 3513 3871 -2275 624 224 141 5 chr13 13551263 13551455 -88321714 + MIR SINE MIR 9 226 -36 348 244 84 25 chr13 13551648 13551767 -88321402 - MIR SINE MIR -8 254 129 546 312 10 25 chr13 13552680 13552879 -88320290 + MIR3 SINE MIR 10 205 -3 2237 110 3 0 chr13 13553721 13554022 -88319147 - AluSg SINE Alu -8 302 1 185 239 22 76 chr13 13554274 13554366 -88318803 - MIR3 SINE MIR -37 171 85 333 290 113 21 chr13 13555997 13556183 -88316986 + L3 LINE CR1 768 970 -607 201 94 0 0 chr13 13556363 13556395 -88316774 + (TG)n Simple_repeat Simple_repeat 1 32 0 219 208 0 62 chr13 13556536 13556584 -88316585 + L2 LINE L2 3210 3254 -18 329 278 158 64 chr13 13557751 13557985 -88315184 + L2 LINE L2 3017 3272 0 880 183 0 0 chr13 13558249 13558380 -88314789 - FLAM_A SINE Alu -2 131 1 538 253 156 18 chr13 13558644 13558975 -88314194 - L1ME3A LINE L1 -165 5956 5588 202 185 0 37 chr13 13559385 13559439 -88313730 + A-rich Low_complexity Low_complexity 5 56 0 2023 137 34 94 chr13 13560023 13560438 -88312731 - MLT1B LTR MaLR 0 390 1 2190 114 0 10 chr13 13561111 13561417 -88311752 + AluSx SINE Alu 1 303 -9 33 0 0 0 chr13 13561477 13561510 -88311659 + AT_rich Low_complexity Low_complexity 1 33 0 198 97 0 0 chr13 13562363 13562375 -88310794 + (T)n Simple_repeat Simple_repeat 1 12 -19 2347 102 0 0 chr13 13562375 13562668 -88310501 + AluSc SINE Alu 1 293 -16 198 97 0 0 chr13 13562668 13562686 -88310483 + (T)n Simple_repeat Simple_repeat 11 31 0 2550 139 65 7 chr13 13563870 13564273 -88308896 - MSTA LTR MaLR -2 426 1 461 307 64 23 chr13 13565238 13565456 -88307713 - MLT1J LTR MaLR -282 229 3 2484 77 0 10 chr13 13565654 13565966 -88307203 - AluY SINE Alu -2 309 1 242 268 111 63 chr13 13566819 13567009 -88306160 - L2 LINE L2 -904 2410 2212 1319 194 88 25 chr13 13567323 13567642 -88305527 - L1MB2 LINE L1 -1 6170 5832 2119 112 3 0 chr13 13568491 13568785 -88304384 + AluSx SINE Alu 1 295 -17 2174 114 0 3 chr13 13569000 13569297 -88303872 - AluSq SINE Alu -13 300 5 815 149 0 0 chr13 13570322 13570436 -88302733 + FLAM_A SINE Alu 16 129 -13 195 42 0 0 chr13 13572114 13572138 -88301031 + (T)n Simple_repeat Simple_repeat 1 24 0 225 175 0 0 chr13 13572504 13572544 -88300625 - L2 LINE L2 -3 3310 3271 197 337 74 32 chr13 13573287 13573382 -88299787 - L2 LINE L2 -191 3081 2983 384 246 120 7 chr13 13573617 13573759 -88299410 - MIR SINE MIR -1 261 104 600 269 41 0 chr13 13573926 13574097 -88299072 + L2 LINE L2 3120 3297 -16 378 325 179 5 chr13 13574114 13574326 -88298843 - MIR SINE MIR -10 252 4 2368 96 0 0 chr13 13575857 13576158 -88297011 + AluSq SINE Alu 1 301 -12 225 154 0 0 chr13 13576384 13576423 -88296746 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 351 136 0 0 chr13 13578564 13578623 -88294546 + (T)n Simple_repeat Simple_repeat 1 59 0 1957 121 21 0 chr13 13578931 13579220 -88293949 - AluSc SINE Alu -14 295 1 407 342 70 56 chr13 13579971 13580328 -88292841 - L2 LINE L2 -15 3257 2896 317 256 111 22 chr13 13580391 13580481 -88292688 + L2 LINE L2 3169 3266 -6 22 80 0 0 chr13 13581654 13581704 -88291465 + AT_rich Low_complexity Low_complexity 1 50 0 1884 154 0 3 chr13 13581814 13582122 -88291047 - AluSx SINE Alu 0 307 1 31066 91 19 26 chr13 13582174 13584956 -88288213 + L1PA7 LINE L1 438 3237 -2917 2387 80 3 19 chr13 13584956 13585268 -88287901 + AluY SINE Alu 1 307 -4 31066 91 19 26 chr13 13585268 13586416 -88286753 + L1PA7 LINE L1 3237 4391 -1763 2000 107 48 7 chr13 13586416 13586706 -88286463 + AluSg SINE Alu 1 302 -8 31066 91 19 26 chr13 13586706 13588561 -88284608 + L1PA7 LINE L1 4391 6134 -20 1018 286 48 13 chr13 13589487 13589802 -88283367 - L2 LINE L2 -3 3310 2985 285 336 49 0 chr13 13589805 13589927 -88283242 + L2 LINE L2 2278 2405 -909 382 345 112 14 chr13 13590229 13590516 -88282653 + L2 LINE L2 2315 2629 -685 548 277 33 66 chr13 13590523 13590997 -88282172 - L1MDb LINE L1 -4611 1835 1190 437 323 101 74 chr13 13591030 13591857 -88281312 - L1MDb LINE L1 -5130 1286 457 425 52 0 0 chr13 13591857 13591915 -88281254 - L1PA4 LINE L1 -3 6152 6095 437 323 101 74 chr13 13591915 13592028 -88281141 - L1MDb LINE L1 -5959 457 348 233 284 60 0 chr13 13592134 13592201 -88280968 + L2 LINE L2 2870 2940 -332 206 265 0 0 chr13 13592514 13592563 -88280606 + L2 LINE L2 3265 3313 0 249 305 72 34 chr13 13593241 13593360 -88279809 + MIR SINE MIR 35 157 -51 276 313 14 28 chr13 13594214 13594358 -88278811 + LTR67 LTR ERVL 410 551 -6 1842 158 58 11 chr13 13595912 13596259 -88276910 - MLT1A1 LTR MaLR -2 363 1 294 289 171 0 chr13 13596839 13596991 -88276178 - MLT1L LTR MaLR 0 615 438 2136 58 6 95 chr13 13598022 13598347 -88274822 - AluY SINE Alu -15 296 1 2288 106 0 0 chr13 13598786 13599079 -88274090 - AluSx SINE Alu -8 304 12 1343 192 60 36 chr13 13599863 13600165 -88273004 - AluJo SINE Alu -3 309 1 1784 179 20 11 chr13 13601645 13601996 -88271173 + MLT1A1 LTR MaLR 11 364 -1 1872 152 53 52 chr13 13602595 13603045 -88270124 - MER61C LTR ERV1 0 434 1 488 281 30 10 chr13 13603063 13603266 -88269903 - L1ME3A LINE L1 -310 5860 5654 246 197 14 42 chr13 13603271 13603342 -88269827 + MER112 DNA MER1_type 1 69 -191 356 292 115 24 chr13 13603621 13603960 -88269209 - L1MEc LINE L1 -3646 2894 2525 2239 109 0 10 chr13 13603999 13604310 -88268859 - AluSg1 SINE Alu -1 308 1 236 238 126 22 chr13 13604633 13604856 -88268313 - L1MEc LINE L1 -4441 2099 1854 2334 102 0 16 chr13 13604873 13605188 -88267981 - AluSg SINE Alu 0 310 1 318 295 108 38 chr13 13605240 13605640 -88267529 - L1MEc LINE L1 -5238 1292 865 2787 127 7 0 chr13 13606508 13606949 -88266220 - L1PA16 LINE L1 -20 6146 5703 452 287 84 7 chr13 13607025 13607168 -88266001 - MIR SINE MIR -84 178 25 231 36 0 0 chr13 13607579 13607607 -88265562 + (CA)n Simple_repeat Simple_repeat 2 29 0 192 156 0 0 chr13 13608144 13608176 -88264993 - MIR SINE MIR -5 257 226 22 0 0 0 chr13 13609491 13609513 -88263656 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 13609712 13609745 -88263424 + AT_rich Low_complexity Low_complexity 1 33 0 189 351 53 62 chr13 13610612 13610820 -88262349 - MIR SINE MIR -56 206 1 6875 105 26 16 chr13 13611125 13612181 -88260988 - MER11C LTR ERVK -4 1067 1 2414 55 0 36 chr13 13614152 13614461 -88258708 + AluY SINE Alu 1 298 -13 376 280 93 9 chr13 13614681 13614788 -88258381 - L2 LINE L2 -6 3307 3192 29 28 0 0 chr13 13615316 13615352 -88257817 + AT_rich Low_complexity Low_complexity 1 36 0 1296 136 0 15 chr13 13617060 13617266 -88255903 + L1PB4 LINE L1 5953 6155 -1 234 0 0 0 chr13 13617398 13617424 -88255745 + (A)n Simple_repeat Simple_repeat 1 26 0 291 250 18 134 chr13 13617957 13618069 -88255100 + L2 LINE L2 3174 3272 0 419 326 14 7 chr13 13618208 13618346 -88254823 + MIR3 SINE MIR 46 184 -24 3363 259 83 18 chr13 13618688 13619953 -88253216 + L1MEc LINE L1 45 1391 -5005 5555 223 30 23 chr13 13620021 13621520 -88251649 + L1M2 LINE L1 1067 2575 -4274 443 193 0 0 chr13 13621521 13621609 -88251560 + L1PA15-16 LINE L1 2817 2904 -3945 29306 105 18 57 chr13 13621652 13628052 -88245117 - L1PA7 LINE L1 0 6154 12 180 0 0 0 chr13 13628064 13628084 -88245085 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1166 193 30 37 chr13 13628089 13628389 -88244780 - MLT1A1 LTR MaLR -67 298 1 2426 139 2 27 chr13 13628540 13628979 -88244190 - L1MB2 LINE L1 0 6171 5744 1050 131 98 65 chr13 13628993 13629238 -88243931 - L1MB2 LINE L1 -528 5655 5403 3385 184 90 28 chr13 13629268 13630056 -88243113 - MER21B LTR ERV1 -26 837 1 10449 165 34 18 chr13 13630135 13632140 -88241029 - MER21A-int LTR ERV1 -57 4134 2097 2202 186 45 97 chr13 13632145 13632877 -88240292 - LTR8A LTR ERV1 0 727 34 5491 217 21 17 chr13 13632893 13634097 -88239072 - MER21A-int LTR ERV1 -2096 2095 887 34720 29 17 1 chr13 13634098 13640127 -88233042 + L1HS LINE L1 2 6155 0 5003 184 38 6 chr13 13640152 13641019 -88232150 - MER21A-int LTR ERV1 -3296 895 1 3885 189 65 13 chr13 13641019 13641763 -88231406 - MER21A LTR ERV1 0 931 150 815 209 75 78 chr13 13641766 13642487 -88230682 + MER52A LTR ERV1 1 751 -269 413 264 296 46 chr13 13642498 13642869 -88230300 + MER52A LTR ERV1 1292 1755 0 743 99 21 71 chr13 13642870 13643011 -88230158 - MER21A LTR ERV1 -785 146 13 4522 123 45 0 chr13 13643450 13644131 -88229038 - LTR62 LTR ERVK -4 715 4 10850 99 9 20 chr13 13645056 13646564 -88226605 + THE1A-int LTR MaLR 90 1580 0 2564 109 3 8 chr13 13646564 13646921 -88226248 + THE1A LTR MaLR 1 355 0 8772 111 26 83 chr13 13646922 13648189 -88224980 + THE1A-int LTR MaLR 2 1340 -240 216 0 0 0 chr13 13648189 13648213 -88224956 + (TA)n Simple_repeat Simple_repeat 1 24 0 617 67 0 0 chr13 13648215 13648290 -88224879 - AluSp/q SINE Alu -18 295 221 8772 111 26 83 chr13 13648290 13648471 -88224698 + THE1A-int LTR MaLR 1341 1439 -141 25 0 0 0 chr13 13649187 13649212 -88223957 + AT_rich Low_complexity Low_complexity 1 25 0 204 296 0 0 chr13 13650081 13650135 -88223034 - L2 LINE L2 -4 3309 3256 234 245 0 0 chr13 13650919 13650972 -88222197 - MER117 DNA MER1_type -8 189 137 776 328 133 25 chr13 13651184 13651986 -88221183 + L2 LINE L2 1870 2758 -556 719 182 8 143 chr13 13653164 13653422 -88219747 - MER112 DNA MER1_type -36 224 2 1654 123 25 0 chr13 13653627 13653871 -88219298 - L1PB1 LINE L1 0 6151 5902 354 257 40 46 chr13 13655276 13655451 -88217718 - LTR33A LTR ERVL -18 505 332 233 0 62 0 chr13 13656496 13656528 -88216641 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1504 164 0 9 chr13 13656557 13656789 -88216380 - AluJo SINE Alu -82 230 1 262 266 83 18 chr13 13657837 13657946 -88215223 + L1MB8 LINE L1 6061 6176 -2 2326 98 7 0 chr13 13658058 13658363 -88214806 - AluY SINE Alu -4 307 1 3038 172 13 7 chr13 13658819 13659366 -88213803 - MER44D DNA MER2_type 0 605 1 184 336 0 58 chr13 13659864 13659968 -88213201 + MIR SINE MIR 95 192 -70 2291 108 7 3 chr13 13660194 13660500 -88212669 + AluSx SINE Alu 1 307 -5 2134 205 101 137 chr13 13664021 13665652 -88207517 + L1ME3 LINE L1 3465 5033 -1113 898 192 101 0 chr13 13665652 13665850 -88207319 + MER20 DNA MER1_type 1 218 -1 2134 205 101 137 chr13 13665850 13665927 -88207242 + L1ME3 LINE L1 5033 5111 -1035 718 206 8 0 chr13 13665942 13666068 -88207101 + FLAM_C SINE Alu 7 133 -10 1338 225 134 52 chr13 13666069 13666199 -88206970 + L1ME3 LINE L1 5107 5225 -937 2018 223 94 18 chr13 13666199 13666750 -88206419 + MLT1E LTR MaLR 1 593 0 1338 225 134 52 chr13 13666750 13667085 -88206084 + L1ME3 LINE L1 5225 5531 -631 906 198 127 0 chr13 13667085 13667282 -88205887 + MER58A DNA MER1_type 1 222 -2 1338 225 134 52 chr13 13667282 13667614 -88205555 + L1ME3 LINE L1 5531 5976 -186 7923 122 13 21 chr13 13668415 13669704 -88203465 + L1PA10 LINE L1 4103 5381 -765 1384 96 15 10 chr13 13669704 13669898 -88203271 + L1PA10 LINE L1 5957 6154 -14 1512 121 49 0 chr13 13670325 13670549 -88202620 - LTR12 LTR ERV1 0 714 480 392 194 31 20 chr13 13670550 13670648 -88202521 - LTR30 LTR ERV1 -80 642 544 6851 133 29 87 chr13 13670648 13672012 -88201157 - pTR5 LTR ERV1 -413 2025 741 878 145 25 31 chr13 13672162 13672321 -88200848 + MER61A LTR ERV1 186 343 0 41487 45 38 0 chr13 13672369 13678295 -88194874 + L1PA4 LINE L1 1 6155 0 2477 118 32 52 chr13 13678985 13679391 -88193778 + MER48 LTR ERV1 1 398 0 408 278 198 22 chr13 13679690 13679960 -88193209 - L1MC4 LINE L1 -850 7042 6678 456 267 76 83 chr13 13680001 13680284 -88192885 + L1MC5 LINE L1 7302 7585 -376 2398 93 0 0 chr13 13680284 13680575 -88192594 + AluSc SINE Alu 1 291 -18 456 267 76 83 chr13 13680575 13680849 -88192320 + L1MC5 LINE L1 7585 7857 -104 2254 176 39 10 chr13 13680849 13681264 -88191905 - LTR3 LTR ERVK 0 429 3 456 267 76 83 chr13 13681264 13681320 -88191849 + L1MC5 LINE L1 7857 7912 -49 222 289 203 41 chr13 13681414 13681808 -88191361 + L2 LINE L2 2384 2841 -473 757 249 31 35 chr13 13682061 13682290 -88190879 + MIR SINE MIR 34 261 -1 207 261 206 0 chr13 13682343 13682435 -88190734 - MIR SINE MIR -9 253 143 278 274 0 32 chr13 13682533 13682628 -88190541 - MIR SINE MIR -113 149 58 205 294 59 0 chr13 13682694 13682762 -88190407 + L2 LINE L2 3201 3272 0 196 103 0 0 chr13 13683519 13683548 -88189621 + L2 LINE L2 3243 3271 -1 886 125 0 0 chr13 13684859 13684979 -88188190 + LTR1 LTR ERV1 666 785 0 354 125 0 0 chr13 13686325 13686373 -88186796 + THE1A LTR MaLR 308 355 0 7900 171 163 3 chr13 13686373 13687735 -88185434 + THE1B-int LTR MaLR 1 1580 0 2358 99 48 14 chr13 13687735 13688087 -88185082 + THE1B LTR MaLR 1 364 0 469 252 8 25 chr13 13689667 13689786 -88183383 - MIR SINE MIR -5 257 141 1706 171 42 10 chr13 13689786 13690096 -88183073 + MSTA LTR MaLR 109 428 0 642 353 63 36 chr13 13690096 13690652 -88182517 + PRIMA41-int LTR ERV1 1137 1707 -5415 5040 122 34 1 chr13 13691064 13691825 -88181344 - L1PB3 LINE L1 0 6154 5369 551 288 72 50 chr13 13691829 13692367 -88180802 + PRIMA41-int LTR ERV1 4431 5020 -2921 420 260 42 65 chr13 13692746 13692962 -88180207 + PRIMA41-int LTR ERV1 5356 5570 -2186 3887 102 24 33 chr13 13692996 13693577 -88179592 + PRIMA41-int LTR ERV1 7168 7743 -377 1971 120 14 4 chr13 13693686 13693962 -88179207 + AluSq SINE Alu 1 279 -34 212 0 0 35 chr13 13693967 13693996 -88179173 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 1208 87 0 17 chr13 13694221 13694393 -88178776 + PRIMA41-int LTR ERV1 7768 7936 -184 792 175 12 24 chr13 13694398 13694564 -88178605 + LOR1b LTR ERV1 298 461 0 246 310 58 39 chr13 13695499 13695654 -88177515 + MIR SINE MIR 20 177 -85 955 133 18 24 chr13 13696338 13696504 -88176665 + MER52C LTR ERV1 1 165 -1113 2534 131 187 20 chr13 13696604 13697091 -88176078 + MER52C LTR ERV1 711 1278 0 3587 126 53 11 chr13 13697091 13697638 -88175531 + MER52C-int LTR ERV1 2 571 -6520 6418 155 82 13 chr13 13697748 13699121 -88174048 + MER52C-int LTR ERV1 1698 3241 -3850 1346 120 10 14 chr13 13699109 13699317 -88173852 + MER52-int LTR ERV1 795 1001 -6090 * 430 291 54 85 chr13 13701151 13701505 -88171664 - L2 LINE L2 -358 2956 2614 1685 169 7 4 chr13 13702788 13703066 -88170103 - AluJo SINE Alu -31 281 3 32 0 0 0 chr13 13703649 13703681 -88169488 + AT_rich Low_complexity Low_complexity 1 32 0 2829 200 6 12 chr13 13706057 13706576 -88166593 - MER82 DNA MER2_type -136 517 2 645 252 69 3 chr13 13706579 13706782 -88166387 - L2 LINE L2 -2001 1313 1031 198 0 0 0 chr13 13706813 13706835 -88166334 + (TA)n Simple_repeat Simple_repeat 1 22 0 29 0 0 0 chr13 13706875 13706904 -88166265 + AT_rich Low_complexity Low_complexity 1 29 0 17701 31 11 0 chr13 13707136 13709260 -88163909 - L1P LINE L1 -1638 4508 2361 521 161 26 2 chr13 13709363 13709469 -88163700 - L1P2 LINE L1 -684 5471 5360 1001 188 56 28 chr13 13710509 13710722 -88162447 + AluJo SINE Alu 1 219 -93 2023 133 0 35 chr13 13710775 13711090 -88162079 - AluJb SINE Alu -8 304 1 430 204 19 56 chr13 13711193 13711301 -88161868 + MIR SINE MIR 9 112 -150 1410 119 9 5 chr13 13711360 13711579 -88161590 - LTR1 LTR ERV1 -565 220 1 1841 139 28 0 chr13 13711829 13712116 -88161053 + L1MA5A LINE L1 6000 6294 -3 5222 191 37 42 chr13 13712371 13712939 -88160230 - L1M4 LINE L1 -1091 5055 4486 1670 99 41 0 chr13 13712939 13713160 -88160009 - MER30 DNA MER1_type 0 230 1 5222 191 37 42 chr13 13713160 13713931 -88159238 - L1M4 LINE L1 -1660 4486 3723 293 282 0 0 chr13 13713923 13714008 -88159161 - L1M4 LINE L1 -3558 2588 2504 * 2334 92 3 0 chr13 13714009 13714304 -88158865 - AluSp SINE Alu -17 296 1 3825 102 25 7 chr13 13714455 13715003 -88158166 - LTR9B LTR ERV1 -86 558 1 4575 141 7 44 chr13 13715004 13715406 -88157763 - HUERS-P3b LTR ERV1 -7 7411 6995 2431 90 0 0 chr13 13715406 13715717 -88157452 - AluY SINE Alu 0 311 1 4575 141 7 44 chr13 13715717 13715729 -88157440 - HUERS-P3b LTR ERV1 -423 6995 6984 2350 68 0 29 chr13 13715729 13716036 -88157133 - AluY SINE Alu -12 299 2 4575 141 7 44 chr13 13716036 13716367 -88156802 - HUERS-P3b LTR ERV1 -434 6984 6693 10308 98 52 8 chr13 13716515 13718245 -88154924 - HUERS-P3b LTR ERV1 -698 6720 2154 369 256 43 37 chr13 13718249 13718413 -88154756 - L1M4 LINE L1 -3700 2446 2282 667 185 132 14 chr13 13718451 13718630 -88154539 + Tigger3(Golem) DNA MER2_type 1 2849 -180 * 7226 103 4 66 chr13 13718628 13719763 -88153406 - Charlie3 DNA MER1_type -4 2706 1642 2080 116 13 13 chr13 13719764 13720066 -88153103 - AluY SINE Alu -9 302 1 2045 114 0 21 chr13 13720066 13720354 -88152815 - AluSg SINE Alu -12 298 16 679 258 50 0 chr13 13721273 13721455 -88151714 + MIR SINE MIR 13 203 -59 1800 165 77 9 chr13 13721474 13721814 -88151355 + MLT2C1 LTR ERVL 35 397 0 323 148 19 0 chr13 13722408 13722462 -88150707 - MER116 DNA Mariner -25 55 1 564 261 48 18 chr13 13723089 13723254 -88149915 + MIR SINE MIR 12 181 -81 2006 125 0 29 chr13 13724203 13724515 -88148654 - AluSx SINE Alu -9 303 1 2375 86 3 16 chr13 13724528 13724841 -88148328 - AluSg SINE Alu -1 309 1 264 234 66 65 chr13 13725661 13725964 -88147205 - L1ME LINE L1 -714 5456 5152 * 335 248 68 26 chr13 13725957 13726074 -88147095 - L1MD2 LINE L1 -30 6329 6208 1659 114 8 4 chr13 13726076 13726312 -88146857 + AluSx SINE Alu 1 237 -75 812 50 0 40 chr13 13726314 13726451 -88146718 + AluSp/q SINE Alu 186 318 0 355 244 47 0 chr13 13726477 13726563 -88146606 - L1MD3 LINE L1 -140 7855 7766 21 0 0 0 chr13 13727180 13727201 -88145968 + AT_rich Low_complexity Low_complexity 1 21 0 778 137 217 6 chr13 13727479 13727640 -88145529 + L1PA16 LINE L1 5963 6157 -9 1972 146 9 22 chr13 13728877 13729192 -88143977 + AluJb SINE Alu 1 311 -1 361 350 35 30 chr13 13729502 13729702 -88143467 + L2 LINE L2 2552 2752 -562 7930 203 19 33 chr13 13729891 13731773 -88141396 + L1 LINE L1 2367 4222 -1924 244 154 0 0 chr13 13731873 13731936 -88141233 + AluSx SINE Alu 246 308 0 24 91 0 0 chr13 13732365 13732431 -88140738 + AT_rich Low_complexity Low_complexity 1 66 0 1823 181 35 6 chr13 13733349 13733692 -88139477 + L1MD2 LINE L1 5644 5996 -363 729 143 86 29 chr13 13733694 13733903 -88139266 + Charlie2 DNA MER1_type 2271 2491 -371 9606 98 79 1 chr13 13734339 13735768 -88137401 - Charlie3 DNA MER1_type -1070 1640 3 1317 148 15 0 chr13 13735769 13735965 -88137204 + Tigger3(Golem) DNA MER2_type 2840 3038 0 234 0 0 0 chr13 13735968 13735994 -88137175 + (CA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr13 13736201 13736222 -88136947 + (TA)n Simple_repeat Simple_repeat 2 22 0 7876 43 0 0 chr13 13736222 13737878 -88135291 - L1PA5 LINE L1 -7 6147 4490 287 200 133 19 chr13 13737878 13737983 -88135186 - L1MEc LINE L1 -4670 1726 1610 22 35 0 0 chr13 13737994 13738023 -88135146 + AT_rich Low_complexity Low_complexity 1 29 0 362 252 77 32 chr13 13738031 13738056 -88135113 - MIR SINE MIR -13 249 227 2515 168 31 17 chr13 13738056 13738478 -88134691 + MSTA LTR MaLR 1 428 0 362 252 77 32 chr13 13738478 13738607 -88134562 - MIR SINE MIR -35 227 88 763 150 0 0 chr13 13739012 13739132 -88134037 + AluSp/q SINE Alu 194 313 0 1021 193 0 0 chr13 13739258 13739424 -88133745 - AluJb SINE Alu -13 299 134 2067 84 66 0 chr13 13739424 13739697 -88133472 - AluSg SINE Alu -19 291 1 1431 171 56 45 chr13 13741332 13741689 -88131480 - MER47A DNA MER2_type -5 361 1 271 236 162 85 chr13 13743258 13743517 -88129652 + MLT1J LTR MaLR 1 279 -232 227 157 84 72 chr13 13743604 13743687 -88129482 + MLT1J LTR MaLR 382 465 -46 1984 153 6 40 chr13 13744147 13744493 -88128676 + MER1B DNA MER1_type 4 337 0 400 349 17 17 chr13 13744667 13744839 -88128330 - MIR SINE MIR -43 219 48 203 182 0 0 chr13 13745179 13745212 -88127957 + (CATA)n Simple_repeat Simple_repeat 4 36 0 276 265 0 0 chr13 13745263 13745346 -88127823 + L1MC4 LINE L1 6614 6696 -1346 258 56 0 0 chr13 13745354 13745390 -88127779 + (TA)n Simple_repeat Simple_repeat 1 36 0 187 329 41 0 chr13 13745498 13745571 -88127598 - MIR3 SINE MIR -6 202 127 2023 116 3 0 chr13 13745992 13746298 -88126871 + AluSx SINE Alu 1 307 0 844 233 47 0 chr13 13747914 13748086 -88125083 - MER5A DNA MER1_type -9 180 1 682 300 76 5 chr13 13749524 13749747 -88123422 + MIR SINE MIR 24 262 0 2494 109 43 0 chr13 13750239 13750586 -88122583 - THE1B LTR MaLR 0 364 3 396 333 25 25 chr13 13752785 13752947 -88120222 + L2 LINE L2 2910 3071 -201 2522 113 32 2 chr13 13753430 13753830 -88119339 + L1PA16 LINE L1 5746 6157 -9 31 26 0 0 chr13 13753830 13753868 -88119301 + AT_rich Low_complexity Low_complexity 1 38 0 253 215 329 0 chr13 13753868 13753947 -88119222 + MIR SINE MIR 112 216 -46 5806 215 37 14 chr13 13756023 13757730 -88115439 - L1 LINE L1 -2395 5170 3420 212 319 69 0 chr13 13757739 13757811 -88115358 + L2 LINE L2 3188 3264 -8 560 127 55 109 chr13 13758190 13758355 -88114814 + LTR37A LTR ERV1 3 158 -268 5543 111 82 19 chr13 13758355 13758417 -88114752 + MER51B-int LTR ERV1 2122 2179 -5637 2261 119 3 6 chr13 13758417 13758729 -88114440 + AluSx SINE Alu 1 311 -1 5543 111 82 19 chr13 13758729 13759743 -88113426 + MER51B-int LTR ERV1 2179 3265 -4551 1914 172 63 35 chr13 13759755 13760243 -88112926 + MER51B-int LTR ERV1 1476 1977 -3240 1019 77 115 2 chr13 13760222 13760483 -88112686 + MER51B-int LTR ERV1 2210 2544 -2673 * 33 0 0 0 chr13 13760506 13760539 -88112630 + AT_rich Low_complexity Low_complexity 1 33 0 9250 134 35 16 chr13 13760560 13760800 -88112369 + MER51B-int LTR ERV1 5617 5851 -1965 1875 116 11 14 chr13 13760800 13761085 -88112084 - AluSx SINE Alu 0 312 29 9250 134 35 16 chr13 13761085 13762409 -88110760 + MER51B-int LTR ERV1 5851 7421 -395 216 0 0 0 chr13 13762409 13762433 -88110736 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 9250 134 35 16 chr13 13762433 13762836 -88110333 + MER51B-int LTR ERV1 7421 7815 -1 2152 99 129 0 chr13 13762839 13763172 -88109997 + MER51B LTR ERV1 2 377 0 461 317 36 20 chr13 13763172 13763507 -88109662 - L1 LINE L1 -5600 1886 1405 461 189 252 0 chr13 13764506 13764633 -88108536 + MER5A DNA MER1_type 26 184 -5 435 257 146 10 chr13 13765819 13766025 -88107144 + MIR SINE MIR 11 244 -18 259 241 66 72 chr13 13766074 13766240 -88106929 - LTR16A1 LTR ERVL 0 457 293 2301 79 3 25 chr13 13766980 13767296 -88105873 - AluSc SINE Alu 0 309 1 24 32 0 0 chr13 13767817 13767848 -88105321 + AT_rich Low_complexity Low_complexity 1 31 0 486 211 23 8 chr13 13767924 13768057 -88105112 - L1ME LINE L1 -382 5780 5646 295 272 37 69 chr13 13768170 13768416 -88104753 - L1M4 LINE L1 -3569 2577 2340 575 284 47 87 chr13 13770008 13770329 -88102840 - L2 LINE L2 0 3313 3006 2315 236 32 0 chr13 13770347 13770940 -88102229 + L1MB8 LINE L1 5379 5990 -188 1987 117 3 60 chr13 13771331 13771647 -88101522 - AluSx SINE Alu -14 298 1 295 200 67 40 chr13 13772086 13772161 -88101008 - L2 LINE L2 -33 3280 3204 227 308 90 41 chr13 13772415 13772681 -88100488 + L2 LINE L2 2326 2604 -710 341 302 103 51 chr13 13772862 13773213 -88099956 + L2 LINE L2 2934 3302 -11 2089 134 109 13 chr13 13774698 13775094 -88098075 + Tigger2a DNA MER2_type 1 434 0 1397 206 7 31 chr13 13775265 13775442 -88097727 - AluJo SINE Alu 0 317 149 2298 102 0 0 chr13 13775442 13775737 -88097432 - AluSc SINE Alu -14 295 1 1397 206 7 31 chr13 13775737 13775883 -88097286 - AluJo SINE Alu -168 149 1 1166 139 12 101 chr13 13776368 13776626 -88096543 - MLT2C2 LTR ERVL 0 464 230 227 361 28 37 chr13 13777193 13777409 -88095760 - L2 LINE L2 -2160 1154 941 1297 144 14 0 chr13 13777607 13777822 -88095347 + MLT1B LTR MaLR 151 368 -22 695 160 0 23 chr13 13779028 13779159 -88094010 - MLT1B LTR MaLR -258 132 5 211 239 106 80 chr13 13780539 13780652 -88092517 + L2 LINE L2 3180 3295 -18 1893 154 7 3 chr13 13781569 13781927 -88091242 - AluSx SINE Alu 0 312 1 295 297 0 0 chr13 13782749 13782823 -88090346 + MIR SINE MIR 168 241 -21 2571 265 131 1 chr13 13783452 13784383 -88088786 - L2 LINE L2 -397 2917 1866 351 60 0 0 chr13 13784728 13784778 -88088391 + (CAT)n Simple_repeat Simple_repeat 2 51 0 446 295 37 58 chr13 13784987 13785177 -88087992 - L2 LINE L2 0 3272 3087 318 279 146 53 chr13 13785193 13785440 -88087729 + L2 LINE L2 2124 2393 -921 659 264 5 40 chr13 13785658 13785865 -88087304 - MIR SINE MIR -14 248 52 245 320 229 20 chr13 13785884 13786137 -88087032 + L2 LINE L2 2578 2883 -431 746 211 72 0 chr13 13786317 13786525 -88086644 - L1MD3 LINE L1 -14 7981 7759 2327 85 3 0 chr13 13786561 13786854 -88086315 - AluSx SINE Alu -8 304 11 5871 148 21 24 chr13 13786862 13788162 -88085007 - L1MA4 LINE L1 -5 6295 4999 2114 108 16 13 chr13 13788162 13788468 -88084701 - AluSg SINE Alu -3 307 1 5871 148 21 24 chr13 13788468 13788643 -88084526 - L1MA4 LINE L1 -1301 4999 4825 202 281 18 18 chr13 13788776 13788833 -88084336 + L2 LINE L2 3008 3064 -208 1068 209 25 11 chr13 13788845 13789269 -88083900 + MLT1D LTR MaLR 1 505 0 269 362 16 16 chr13 13789354 13789481 -88083688 + L2 LINE L2 3143 3269 -3 339 313 148 8 chr13 13789842 13789970 -88083199 + MER5A DNA MER1_type 44 189 0 299 328 35 9 chr13 13790107 13790223 -88082946 - MIR SINE MIR -27 235 117 264 200 36 0 chr13 13792324 13792379 -88080790 + L2 LINE L2 3254 3310 -3 1493 206 147 25 chr13 13792455 13792964 -88080205 - LTR1B LTR ERV1 -255 571 1 3509 167 30 13 chr13 13794424 13795123 -88078046 + MER50 LTR ERV1 1 711 -23 261 319 118 8 chr13 13795356 13795475 -88077694 + MIR3 SINE MIR 68 199 -9 2294 107 0 3 chr13 13798658 13798958 -88074211 - AluSq SINE Alu -14 299 1 296 350 21 14 chr13 13799755 13799898 -88073271 + MER5A DNA MER1_type 37 180 -9 214 159 91 0 chr13 13799920 13799964 -88073205 + MIR3 SINE MIR 155 202 -6 344 216 159 0 chr13 13800663 13800751 -88072418 + MIR3 SINE MIR 103 204 -4 25 0 0 0 chr13 13802214 13802239 -88070930 + AT_rich Low_complexity Low_complexity 1 25 0 460 287 79 6 chr13 13803342 13803506 -88069663 + MIR SINE MIR 83 258 -4 247 234 26 0 chr13 13803546 13803623 -88069546 - L1MC4 LINE L1 -1347 6695 6617 2192 114 0 3 chr13 13803660 13803958 -88069211 - AluSq SINE Alu -15 298 2 4078 89 32 0 chr13 13804880 13805464 -88067705 - L1PA10 LINE L1 0 6168 5566 1016 199 0 6 chr13 13805896 13806067 -88067102 - AluJb SINE Alu -10 302 133 23 54 0 0 chr13 13808533 13808570 -88064599 + AT_rich Low_complexity Low_complexity 1 37 0 557 351 93 47 chr13 13809004 13809641 -88063528 - L2 LINE L2 -21 3251 2572 356 253 68 27 chr13 13809927 13810073 -88063096 + Charlie8 DNA MER1_type 41 192 -2225 1094 135 43 5 chr13 13810197 13810382 -88062787 + LTR28 LTR ERV1 13 204 -816 181 293 24 0 chr13 13810600 13810641 -88062528 - L3 LINE CR1 -7 1570 1529 1365 194 78 50 chr13 13810726 13811124 -88062045 + LTR27 LTR ERV1 206 614 -22 432 297 51 0 chr13 13811322 13811440 -88061729 - L2 LINE L2 0 3272 3149 37 52 0 0 chr13 13811440 13811498 -88061671 + AT_rich Low_complexity Low_complexity 1 58 0 2417 79 0 16 chr13 13812199 13812503 -88060666 + AluSc SINE Alu 1 299 -10 266 310 159 0 chr13 13814599 13814712 -88058457 + L2 LINE L2 3140 3270 -2 888 170 18 58 chr13 13815418 13815642 -88057527 - MSTB2 LTR MaLR 0 457 243 2623 73 14 0 chr13 13815664 13816035 -88057134 - L1P LINE L1 -1707 4439 4064 6772 59 10 8 chr13 13816038 13817034 -88056135 + L1PA7 LINE L1 5144 6141 -13 805 208 51 10 chr13 13817092 13817289 -88055880 - MSTB2 LTR MaLR -252 205 1 360 242 39 92 chr13 13817588 13817741 -88055428 + MIR SINE MIR 42 186 -76 395 227 0 0 chr13 13817849 13817924 -88055245 + MER63 DNA MER1_type 676 750 -86 286 250 92 0 chr13 13817927 13818003 -88055166 + MER63 DNA MER1_type 979 1061 0 229 289 184 7 chr13 13818368 13818520 -88054649 - MIR SINE MIR -69 193 15 2601 55 0 3 chr13 13819401 13819713 -88053456 - AluY SINE Alu 0 311 1 993 153 7 0 chr13 13820228 13820432 -88052737 - AluSg/x SINE Alu 0 336 132 436 174 42 8 chr13 13820515 13820651 -88052518 - L1MA4A LINE L1 -157 2350 2249 372 284 195 2 chr13 13820720 13820905 -88052264 - HAL1b LINE L1 -149 2358 754 2208 120 0 13 chr13 13821355 13821663 -88051506 - AluSc SINE Alu -4 305 2 323 282 224 4 chr13 13821678 13821937 -88051232 - HAL1 LINE L1 -635 1872 1557 260 263 37 37 chr13 13822312 13822502 -88050667 - HAL1 LINE L1 -1327 1180 991 2104 209 87 26 chr13 13822503 13823111 -88050058 - L1MB7 LINE L1 -10 6174 5530 361 248 91 52 chr13 13823162 13823392 -88049777 - LTR40b LTR ERVL -88 374 136 206 323 31 0 chr13 13823559 13823624 -88049545 - L2 LINE L2 -736 2578 2512 232 204 0 0 chr13 13823624 13823673 -88049496 - HAL1 LINE L1 -969 1538 1490 960 283 188 50 chr13 13823859 13824807 -88048362 - HAL1 LINE L1 -343 2164 1348 1826 202 66 7 chr13 13824807 13825247 -88047922 + MLT1C LTR MaLR 1 466 -1 960 283 188 50 chr13 13825247 13825351 -88047818 - HAL1 LINE L1 -1159 1348 1260 1540 196 36 0 chr13 13825351 13825631 -88047538 - AluJo SINE Alu -10 302 13 960 283 188 50 chr13 13825631 13826196 -88046973 - HAL1 LINE L1 -1247 1260 774 2240 192 35 71 chr13 13826196 13826831 -88046338 - LTR9 LTR ERV1 0 612 1 960 283 188 50 chr13 13826831 13827006 -88046163 - HAL1 LINE L1 -1733 774 123 327 262 138 11 chr13 13827635 13827855 -88045314 - L1M4 LINE L1 -1309 3184 1054 280 247 47 0 chr13 13828011 13828096 -88045073 + GA-rich Low_complexity Low_complexity 3 91 0 24 0 0 0 chr13 13828590 13828614 -88044555 + AT_rich Low_complexity Low_complexity 1 24 0 199 286 16 63 chr13 13828955 13829018 -88044151 + MIR SINE MIR 87 146 -62 415 275 41 119 chr13 13829030 13829299 -88043870 + MIR SINE MIR 15 262 0 250 255 54 54 chr13 13829756 13829905 -88043264 + MLT1J2 LTR MaLR 302 450 0 329 252 111 74 chr13 13829926 13830061 -88043108 - MIR3 SINE MIR -60 148 9 217 317 35 48 chr13 13830752 13830897 -88042272 + MER5A DNA MER1_type 4 146 -43 207 233 116 101 chr13 13831067 13831196 -88041973 - L3 LINE CR1 -829 748 618 208 137 39 0 chr13 13831198 13831249 -88041920 + (TA)n Simple_repeat Simple_repeat 2 54 0 254 121 61 10 chr13 13831309 13831408 -88041761 + (TA)n Simple_repeat Simple_repeat 1 104 0 456 86 0 0 chr13 13831731 13831801 -88041368 + MER57B LTR ERV1 365 434 0 2178 169 67 36 chr13 13831801 13832389 -88040780 + MER21B LTR ERV1 199 848 -15 251 277 54 8 chr13 13832539 13832669 -88040500 - L1ME4a LINE L1 -12 6109 5974 502 254 144 28 chr13 13832877 13833196 -88039973 - HsTC2 DNA Tc2 -1045 853 498 2154 118 21 0 chr13 13833533 13833820 -88039349 - AluSx SINE Alu -19 293 1 48 72 0 0 chr13 13834123 13834220 -88038949 + AT_rich Low_complexity Low_complexity 1 97 0 438 248 27 7 chr13 13834587 13834736 -88038433 + MLT2B1 LTR ERVL 327 478 -42 409 301 92 32 chr13 13835103 13835352 -88037817 - HAL1b LINE L1 -860 488 225 815 291 82 12 chr13 13835798 13836117 -88037052 - MLT1H LTR MaLR 0 549 209 2037 129 26 11 chr13 13836481 13836831 -88036338 - THE1A LTR MaLR 0 355 1 11339 89 12 22 chr13 13836831 13838005 -88035164 - THE1A-int LTR MaLR 0 1580 423 2224 109 0 0 chr13 13838005 13838298 -88034871 + AluSx SINE Alu 20 312 0 11339 89 12 22 chr13 13838298 13838718 -88034451 - THE1A-int LTR MaLR -1157 423 1 2091 131 23 11 chr13 13838718 13839069 -88034100 - THE1A LTR MaLR 0 355 1 1940 180 0 0 chr13 13839652 13839957 -88033212 + AluJb SINE Alu 1 305 -7 465 87 19 48 chr13 13839965 13840068 -88033101 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 * 615 121 0 0 chr13 13840053 13840152 -88033017 + (GGAGA)n Simple_repeat Simple_repeat 2 100 0 180 247 68 27 chr13 13840415 13840488 -88032681 - L2 LINE L2 -938 2376 2301 37 76 0 0 chr13 13840904 13840983 -88032186 + AT_rich Low_complexity Low_complexity 1 79 0 240 307 123 45 chr13 13841916 13842095 -88031074 - MIR SINE MIR -50 212 20 477 222 269 0 chr13 13842235 13842406 -88030763 - LTR50 LTR ERVL 0 795 579 22 35 0 0 chr13 13842497 13842526 -88030643 + AT_rich Low_complexity Low_complexity 1 29 0 861 222 11 0 chr13 13842635 13842815 -88030354 + MER97b DNA MER1_type? 1 182 -871 267 246 0 43 chr13 13843462 13843531 -88029638 - MLT1J2 LTR MaLR -120 330 265 331 229 110 0 chr13 13843887 13843996 -88029173 - MLT1J LTR MaLR -388 123 3 27 29 0 0 chr13 13844308 13844342 -88028827 + AT_rich Low_complexity Low_complexity 1 34 0 1554 120 58 82 chr13 13844413 13844705 -88028464 - AluJb SINE Alu -27 285 1 1810 181 29 12 chr13 13845332 13845674 -88027495 + MER7A DNA MER2_type 1 346 0 532 327 183 26 chr13 13845783 13846318 -88026851 - L3 LINE CR1 -1 1576 958 278 131 246 0 chr13 13846850 13846911 -88026258 + MADE1 DNA Mariner 1 76 -4 253 270 104 0 chr13 13846950 13847065 -88026104 - L1MEc LINE L1 -4002 2394 2268 780 218 143 4 chr13 13847065 13847345 -88025824 - MER33 DNA MER1_type 0 324 6 1241 237 134 46 chr13 13847351 13847536 -88025633 - L1MEc LINE L1 -4122 2274 2107 180 0 0 0 chr13 13847536 13847556 -88025613 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1241 237 134 46 chr13 13847556 13847605 -88025564 - L1MEc LINE L1 -4289 2107 2064 2141 104 3 10 chr13 13847605 13847903 -88025266 - AluSx SINE Alu -16 296 1 1241 237 134 46 chr13 13847903 13847997 -88025172 - L1MEc LINE L1 -4332 2064 1980 315 0 0 0 chr13 13847997 13848032 -88025137 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 1241 237 134 46 chr13 13848032 13848601 -88024568 - L1MEc LINE L1 -4416 1980 1295 2081 124 3 0 chr13 13849531 13849821 -88023348 + AluSx SINE Alu 7 297 -15 1382 238 118 72 chr13 13849898 13850465 -88022704 + MLT1E LTR MaLR 1 593 0 276 356 50 0 chr13 13850511 13850612 -88022557 - MIR SINE MIR -156 106 1 2515 122 12 41 chr13 13850720 13850766 -88022403 + L1PB3 LINE L1 5741 5787 -367 2258 116 7 0 chr13 13850766 13851068 -88022101 + AluSx SINE Alu 1 304 -8 2515 122 12 41 chr13 13851068 13851440 -88021729 + L1PB3 LINE L1 5787 6147 -7 186 43 0 0 chr13 13851443 13851466 -88021703 + (TA)n Simple_repeat Simple_repeat 2 24 0 320 270 35 35 chr13 13851552 13851667 -88021502 + MLT1J LTR MaLR 330 444 -67 21 36 0 0 chr13 13851856 13851884 -88021285 + AT_rich Low_complexity Low_complexity 1 28 0 229 289 169 0 chr13 13852396 13852479 -88020690 - L2 LINE L2 -9 3304 3208 461 301 75 43 chr13 13852983 13853262 -88019907 + L1 LINE L1 4732 5019 -1127 7490 223 76 22 chr13 13853274 13854410 -88018759 + L1MDa LINE L1 19 1093 -5447 4498 71 3 0 chr13 13854410 13854987 -88018182 + L1PA7 LINE L1 5573 6151 -3 7490 223 76 22 chr13 13854987 13856029 -88017140 + L1MDa LINE L1 1093 2314 -4226 2020 230 38 11 chr13 13856042 13856563 -88016606 - MER74A LTR ERVL -14 544 10 270 0 0 0 chr13 13856563 13856593 -88016576 + (TG)n Simple_repeat Simple_repeat 2 31 0 2529 104 6 8 chr13 13856633 13856987 -88016182 - THE1A LTR MaLR -2 353 1 338 221 57 6 chr13 13856991 13857149 -88016020 + L1MDa LINE L1 2320 2485 -4055 538 253 18 29 chr13 13857167 13857337 -88015832 + L1MCb LINE L1 8 175 -5870 2954 215 61 39 chr13 13857337 13858108 -88015061 + L1MCb LINE L1 1049 1802 -4762 1060 200 0 0 chr13 13858108 13858283 -88014886 + FAM SINE Alu 1 175 0 2954 215 61 39 chr13 13858283 13858423 -88014746 + L1MCb LINE L1 1802 1937 -4627 2034 148 0 7 chr13 13858423 13858727 -88014442 + AluSx SINE Alu 1 302 -10 2954 215 61 39 chr13 13858727 13859395 -88013774 + L1MCb LINE L1 1937 2589 -3975 1400 166 15 109 chr13 13859395 13859798 -88013371 + MLT1A1 LTR MaLR 1 365 0 2954 215 61 39 chr13 13859798 13860546 -88012623 + L1MCb LINE L1 2589 3524 -3040 644 235 60 0 chr13 13860757 13860923 -88012246 + MER58C DNA MER1_type 40 215 0 236 310 23 62 chr13 13860924 13861053 -88012116 - MLT1I LTR MaLR -17 392 269 236 215 7 36 chr13 13861541 13861660 -88011509 + L1MDa LINE L1 2454 2571 -3969 1945 114 75 33 chr13 13861856 13862216 -88010953 + THE1C LTR MaLR 1 375 0 1802 135 95 20 chr13 13862368 13862717 -88010452 + THE1C LTR MaLR 1 375 0 750 161 200 0 chr13 13862719 13862874 -88010295 - MER5A DNA MER1_type -3 186 1 1836 143 0 41 chr13 13863618 13864033 -88009136 - AluSx SINE Alu 0 404 2 648 232 124 36 chr13 13864223 13864417 -88008752 - MIR SINE MIR -3 259 49 1580 178 40 36 chr13 13865404 13865707 -88007462 - AluJo SINE Alu -8 304 1 1227 275 56 11 chr13 13865714 13866161 -88007008 - L1ME3A LINE L1 -193 5960 5494 1773 315 65 17 chr13 13866701 13867349 -88005820 + MER115 DNA AcHobo 4 682 -11 21 36 0 0 chr13 13867963 13867991 -88005178 + AT_rich Low_complexity Low_complexity 1 28 0 2419 86 0 10 chr13 13868790 13869092 -88004077 - AluSc SINE Alu -6 303 5 188 323 147 63 chr13 13869223 13869557 -88003612 - L2 LINE L2 -5 3267 2906 203 343 0 43 chr13 13871687 13871757 -88001412 + L2 LINE L2 3201 3267 -5 647 282 104 6 chr13 13872211 13872445 -88000724 + MIR SINE MIR 4 259 -3 189 217 22 22 chr13 13872708 13872754 -88000415 + MER5B DNA MER1_type 2 47 -131 195 302 0 16 chr13 13872765 13872828 -88000341 - MER5B DNA MER1_type -110 68 7 633 68 39 0 chr13 13873177 13873280 -87999889 + (TCTA)n Simple_repeat Simple_repeat 3 109 0 312 27 0 0 chr13 13873280 13873317 -87999852 + (CAT)n Simple_repeat Simple_repeat 2 38 0 552 323 69 37 chr13 13873999 13874349 -87998820 - L1ME3A LINE L1 -1288 4841 4481 2109 139 7 3 chr13 13874559 13874860 -87998309 - AluJb SINE Alu -10 302 1 237 294 42 25 chr13 13874879 13874998 -87998171 - L1ME3A LINE L1 -2010 4119 3999 2545 212 36 15 chr13 13875037 13875565 -87997604 + MLT1F LTR MaLR 4 542 0 21 0 0 0 chr13 13875570 13875591 -87997578 + AT_rich Low_complexity Low_complexity 1 21 0 1771 174 14 0 chr13 13875598 13875959 -87997210 + AluSx SINE Alu 1 365 0 526 308 45 32 chr13 13875986 13876233 -87996936 - L1ME3A LINE L1 -2218 3911 3662 294 95 0 0 chr13 13877565 13877607 -87995562 + (TTC)n Simple_repeat Simple_repeat 2 43 0 378 282 20 67 chr13 13878249 13878398 -87994771 + MIR SINE MIR 37 178 -84 356 311 102 8 chr13 13878722 13878966 -87994203 - L1ME3A LINE L1 -2829 3300 3034 321 26 0 0 chr13 13881841 13881879 -87991290 + (GA)n Simple_repeat Simple_repeat 2 39 0 252 171 0 0 chr13 13881977 13882018 -87991151 - FLAM SINE Alu -9 124 84 955 188 8 109 chr13 13882019 13882258 -87990911 - AluJo SINE Alu -95 217 3 1382 187 146 31 chr13 13882365 13882783 -87990386 - MER31B LTR ERV1 0 466 1 215 327 19 29 chr13 13883026 13883037 -87990132 + MER5A DNA MER1_type 4 13 -176 499 153 41 0 chr13 13883037 13883135 -87990034 - MER5A DNA MER1_type 0 189 88 2251 99 10 0 chr13 13883325 13883629 -87989540 + AluSp SINE Alu 5 311 -2 348 193 57 23 chr13 13883632 13883720 -87989449 - MER5A DNA MER1_type -98 91 1 182 277 0 0 chr13 13884552 13884599 -87988570 - L2 LINE L2 0 3313 3267 214 185 272 0 chr13 13884689 13884781 -87988388 - L2 LINE L2 -248 3065 2949 236 274 69 0 chr13 13884829 13884931 -87988238 - L1ME3A LINE L1 -6008 111 3 502 273 65 25 chr13 13884931 13885122 -87988047 - MIR SINE MIR -62 146 3 270 339 26 0 chr13 13885808 13885923 -87987246 + MIR SINE MIR 33 150 -112 416 241 43 0 chr13 13886385 13886501 -87986668 + MER45A DNA AcHobo 58 178 0 2597 98 25 6 chr13 13886585 13886942 -87986227 - THE1B LTR MaLR 0 364 1 4951 63 11 0 chr13 13887887 13888524 -87984645 + L1PA8 LINE L1 5526 6169 -3 3360 124 4 4 chr13 13888853 13889354 -87983815 - MER1A DNA MER1_type 0 529 29 254 250 0 17 chr13 13889501 13889561 -87983608 + CT-rich Low_complexity Low_complexity 2 60 0 192 111 0 0 chr13 13889837 13889873 -87983296 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 274 291 50 21 chr13 13890348 13890489 -87982680 - L1MDa LINE L1 -4564 1565 1421 482 221 21 35 chr13 13890677 13890822 -87982347 - L1MDa LINE L1 -4914 1205 1063 600 167 16 24 chr13 13890860 13890986 -87982183 - MLT1B LTR MaLR 0 390 266 2211 196 108 65 chr13 13891002 13891667 -87981502 + LTR8A LTR ERV1 34 727 0 692 164 109 134 chr13 13891667 13891903 -87981266 - MLT1B LTR MaLR -122 268 39 587 350 49 55 chr13 13891922 13892490 -87980679 - L1MDa LINE L1 -5111 1008 444 284 292 97 0 chr13 13893164 13893277 -87979892 - MIR SINE MIR -65 197 74 456 19 0 0 chr13 13894703 13894756 -87978413 + (TG)n Simple_repeat Simple_repeat 2 54 0 267 79 0 0 chr13 13895025 13895063 -87978106 + (CA)n Simple_repeat Simple_repeat 1 38 0 228 349 12 12 chr13 13896022 13896105 -87977064 - L2 LINE L2 -1 3271 3189 341 308 175 0 chr13 13896116 13896259 -87976910 + MIR SINE MIR 9 176 -86 238 315 96 52 chr13 13897236 13897506 -87975663 - L2 LINE L2 -712 2602 2321 319 343 64 17 chr13 13897611 13897783 -87975386 + MLT1I LTR MaLR 230 409 0 234 339 16 39 chr13 13897819 13897946 -87975223 - L2 LINE L2 -1045 2269 2146 892 256 79 15 chr13 13897946 13898286 -87974883 - LTR33A LTR ERVL 0 523 162 901 292 115 5 chr13 13898296 13898669 -87974500 - ERVL LTR ERVL -632 5132 4719 208 391 82 9 chr13 13898749 13898859 -87974310 + MIR SINE MIR 34 151 -57 308 237 0 0 chr13 13899083 13899142 -87974027 + L2 LINE L2 2995 3053 -219 2608 150 13 4 chr13 13899240 13899699 -87973470 + L1MC2 LINE L1 5874 6336 -8 2063 151 27 0 chr13 13899967 13900305 -87972864 - MER7A DNA MER2_type -1 345 1 736 126 0 0 chr13 13900348 13900451 -87972718 - AluSp/q SINE Alu -23 290 188 2268 119 0 0 chr13 13900453 13900756 -87972413 - AluSx SINE Alu -9 303 1 2322 138 54 0 chr13 13901217 13901587 -87971582 - MLT1B LTR MaLR 0 390 1 1957 144 0 3 chr13 13901797 13902089 -87971080 + AluSx SINE Alu 1 291 -21 1996 199 19 28 chr13 13902166 13902629 -87970540 + LTR40b LTR ERVL 1 459 -3 6128 147 21 74 chr13 13904995 13906579 -87966590 - L1MC2 LINE L1 0 6624 5153 318 290 0 0 chr13 13906576 13906669 -87966500 - L1MC2 LINE L1 -2026 4400 4308 * 4889 227 24 48 chr13 13906670 13908591 -87964578 - L1MC2 LINE L1 -2303 4123 2256 2251 173 24 30 chr13 13908580 13908933 -87964236 - L1MC2 LINE L1 -4467 1959 1605 * 1777 136 44 57 chr13 13908933 13909249 -87963920 - AluJb SINE Alu 0 312 1 2251 173 24 30 chr13 13909249 13909707 -87963462 - L1MC2 LINE L1 -4821 1605 1063 1711 214 66 35 chr13 13909698 13910184 -87962985 - L1MC2 LINE L1 -5905 521 21 * 442 288 70 90 chr13 13910577 13910842 -87962327 + L2 LINE L2 2807 3063 -250 2453 66 0 7 chr13 13910842 13911145 -87962024 + AluY SINE Alu 2 302 -9 442 288 70 90 chr13 13911145 13911292 -87961877 + L2 LINE L2 3063 3211 -102 236 297 0 14 chr13 13911660 13911734 -87961435 + MLT1J2 LTR MaLR 70 142 -308 2015 167 34 0 chr13 13911948 13912302 -87960867 - MER47A DNA MER2_type 0 366 1 354 271 8 54 chr13 13913182 13913311 -87959858 + MIR SINE MIR 126 248 -14 182 218 0 18 chr13 13913322 13913377 -87959792 + CT-rich Low_complexity Low_complexity 1 54 0 290 241 17 52 chr13 13913417 13913591 -87959578 + (TA)n Simple_repeat Simple_repeat 2 169 0 439 310 138 16 chr13 13913762 13914210 -87958959 - L1ME LINE L1 -363 5799 5297 337 253 144 26 chr13 13914250 13914444 -87958725 - L1ME LINE L1 -913 5233 5017 1756 188 0 13 chr13 13915908 13916212 -87956957 + AluJo SINE Alu 1 300 -12 25 0 0 0 chr13 13916606 13916631 -87956538 + AT_rich Low_complexity Low_complexity 1 25 0 805 245 20 70 chr13 13916675 13917030 -87956139 - L1ME2 LINE L1 -150 6014 5678 389 285 17 52 chr13 13917030 13917202 -87955967 + L1M4 LINE L1 2862 3027 -3119 400 358 47 12 chr13 13917264 13917605 -87955564 + L1MEc LINE L1 47 399 -5997 6605 75 16 3 chr13 13917824 13920944 -87952225 - L1PA7 LINE L1 -3 6151 2937 697 355 82 7 chr13 13920944 13921370 -87951799 - L1MDa LINE L1 -4474 1655 1198 1976 146 13 3 chr13 13921458 13921766 -87951403 + MER1B DNA MER1_type 29 339 0 315 219 31 10 chr13 13921828 13921924 -87951245 - L1MDa LINE L1 -5000 1119 1022 4090 269 108 18 chr13 13922294 13923973 -87949196 - L2 LINE L2 -3 3310 1415 35 54 0 0 chr13 13924623 13924679 -87948490 + AT_rich Low_complexity Low_complexity 1 56 0 220 329 12 12 chr13 13924733 13924818 -87948351 + L2 LINE L2 3186 3270 -2 1897 152 3 23 chr13 13925179 13925341 -87947828 - AluSx SINE Alu -16 296 141 2187 136 0 0 chr13 13925341 13925635 -87947534 - AluSg SINE Alu -16 294 1 1897 152 3 23 chr13 13925635 13925774 -87947395 - AluSx SINE Alu -171 141 1 5066 210 57 43 chr13 13926141 13927697 -87945472 + L1M4 LINE L1 16 1592 -4950 444 318 45 23 chr13 13927876 13928052 -87945117 + MIR SINE MIR 14 193 -69 213 94 0 0 chr13 13928052 13928084 -87945085 + (CA)n Simple_repeat Simple_repeat 2 33 0 33 43 0 0 chr13 13928698 13928745 -87944424 + AT_rich Low_complexity Low_complexity 1 47 0 210 254 0 0 chr13 13928820 13928879 -87944290 + (TA)n Simple_repeat Simple_repeat 2 60 0 301 294 139 13 chr13 13928882 13929120 -87944049 - L1MC4a LINE L1 -1902 5906 5639 302 247 0 22 chr13 13929129 13929218 -87943951 + MLT1L LTR MaLR 1 87 -528 274 263 12 0 chr13 13929547 13929627 -87943542 - L1MC4a LINE L1 -2171 5637 5557 235 268 330 0 chr13 13930241 13930353 -87942816 - MER5A DNA MER1_type 0 189 41 535 324 34 0 chr13 13930362 13930541 -87942628 + HERV16 LTR ERVL 1390 1574 -3422 497 261 73 32 chr13 13930631 13930849 -87942320 - LTR33A LTR ERVL 0 523 297 1164 248 124 21 chr13 13930993 13931460 -87941709 + MLT1H1 LTR MaLR 35 549 -6 406 267 39 61 chr13 13932576 13932756 -87940413 + MER5B DNA MER1_type 1 176 -2 3699 196 9 15 chr13 13934364 13935222 -87937947 - L1P LINE L1 -789 5357 4505 259 224 0 82 chr13 13935240 13935338 -87937831 + L1MC4 LINE L1 6614 6703 -1339 481 232 62 0 chr13 13935423 13935535 -87937634 + MER63A DNA MER1_type 2 120 0 * 1812 174 93 30 chr13 13935533 13935994 -87937175 + LTR2B LTR ERV1 1 490 0 516 240 0 0 chr13 13935994 13936090 -87937079 + MER63A DNA MER1_type 115 210 0 226 302 71 71 chr13 13936209 13936335 -87936834 + MIR SINE MIR 20 145 -117 17354 61 1 1 chr13 13936790 13942754 -87930415 - L1PA5 LINE L1 -2 6152 11 2414 94 0 0 chr13 13942920 13943228 -87929941 - AluY SINE Alu -3 308 1 270 313 47 26 chr13 13943248 13943440 -87929729 - MLT1K LTR MaLR -12 576 381 1314 218 41 24 chr13 13943626 13943920 -87929249 + MLT1A1 LTR MaLR 67 365 0 5658 187 76 148 chr13 13943921 13945790 -87927379 + MLT1A1-int LTR MaLR 2 1735 0 613 181 153 173 chr13 13945790 13946194 -87926975 + MLT1A1 LTR MaLR 1 396 0 3011 157 42 11 chr13 13946374 13946903 -87926266 + LTR35 LTR ERV1 74 618 0 29 47 0 0 chr13 13948498 13948541 -87924628 + AT_rich Low_complexity Low_complexity 1 43 0 750 196 199 79 chr13 13948825 13949091 -87924078 - MER46C DNA MER2_type -4 334 37 234 186 31 56 chr13 13949562 13949723 -87923446 + (TTATA)n Simple_repeat Simple_repeat 4 160 0 34 55 0 0 chr13 13949734 13949789 -87923380 + AT_rich Low_complexity Low_complexity 1 55 0 2353 109 0 0 chr13 13950349 13950653 -87922516 + AluSx SINE Alu 1 304 -8 1486 282 216 17 chr13 13950856 13951034 -87922135 + L2 LINE L2 1637 1778 -1536 1624 183 23 3 chr13 13951034 13951334 -87921835 - AluJo SINE Alu -6 306 1 1486 282 216 17 chr13 13951334 13952096 -87921073 + L2 LINE L2 1778 2764 -550 226 255 61 20 chr13 13952538 13952636 -87920533 + LTR67 LTR ERVL 432 533 -24 286 287 70 31 chr13 13952653 13952782 -87920387 + L2 LINE L2 2755 2888 -426 1712 192 0 3 chr13 13954168 13954459 -87918710 + AluJb SINE Alu 1 290 -22 36 23 0 0 chr13 13954459 13954502 -87918667 + AT_rich Low_complexity Low_complexity 1 43 0 1535 175 45 25 chr13 13954825 13955111 -87918058 - AluJo SINE Alu -18 294 3 731 301 108 34 chr13 13955415 13955830 -87917339 + MLT1J LTR MaLR 59 504 -7 701 319 140 38 chr13 13955953 13956105 -87917064 - L3 LINE CR1 -207 1370 1235 2390 106 0 0 chr13 13956105 13956417 -87916752 - AluSx SINE Alu 0 312 1 701 319 140 38 chr13 13956417 13956998 -87916171 - L3 LINE CR1 -342 1235 562 390 299 50 58 chr13 13958256 13958497 -87914672 - MIR SINE MIR -16 246 8 2157 175 91 30 chr13 13959346 13959808 -87913361 - LTR2B LTR ERV1 0 490 1 972 187 66 10 chr13 13959970 13960168 -87913001 - MLT1C LTR MaLR 0 467 259 427 79 86 7 chr13 13960392 13960544 -87912625 + (TA)n Simple_repeat Simple_repeat 1 164 0 301 92 86 18 chr13 13960620 13960783 -87912386 + (TA)n Simple_repeat Simple_repeat 2 175 0 31 44 0 0 chr13 13960789 13960834 -87912335 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 13960908 13960929 -87912240 + AT_rich Low_complexity Low_complexity 1 21 0 928 181 10 36 chr13 13960961 13961154 -87912015 - MER2 DNA MER2_type -156 189 2 2841 233 51 13 chr13 13961160 13961788 -87911381 + MER82 DNA MER2_type 2 653 0 1458 167 57 88 chr13 13961788 13961816 -87911353 + L1MB4 LINE L1 5787 5814 -366 2517 53 7 0 chr13 13961816 13962115 -87911054 + AluY SINE Alu 1 301 -10 1458 167 57 88 chr13 13962115 13962487 -87910682 + L1MB4 LINE L1 5814 6174 -6 1634 226 11 50 chr13 13963647 13963696 -87909473 + MLT1A1 LTR MaLR 1 50 -315 2152 121 0 3 chr13 13963696 13963986 -87909183 - AluSx SINE Alu -23 289 1 1634 226 11 50 chr13 13963986 13964316 -87908853 + MLT1A1 LTR MaLR 50 365 0 2379 83 204 3 chr13 13964460 13964833 -87908336 - LTR7 LTR ERV1 -2 448 1 9538 101 73 60 chr13 13964860 13967124 -87906045 - pTR5 LTR ERV1 0 8399 504 307 194 0 0 chr13 13967123 13967185 -87905984 - HERV17 LTR ERV1 -835 7564 7503 * 546 132 85 9 chr13 13967183 13967289 -87905880 - HERV17 LTR ERV1 -7726 900 787 3672 55 24 2 chr13 13967292 13967743 -87905426 - LTR2B LTR ERV1 -29 461 1 2264 100 0 3 chr13 13968790 13969089 -87904080 + AluSg SINE Alu 1 298 -12 191 204 93 0 chr13 13969099 13969153 -87904016 - MIR SINE MIR -56 206 148 279 174 0 0 chr13 13969191 13969237 -87903932 - MIR SINE MIR -105 157 112 1835 179 92 113 chr13 13969888 13970391 -87902778 - MLT2B1 LTR ERVL 0 520 27 2066 149 0 0 chr13 13970391 13970686 -87902483 - AluSx SINE Alu -13 299 5 1835 179 92 113 chr13 13970686 13970713 -87902456 - MLT2B1 LTR ERVL -493 27 1 955 244 188 73 chr13 13970747 13971214 -87901955 + MLT1G1 LTR MaLR 22 595 0 250 296 28 0 chr13 13971943 13972014 -87901155 + L2 LINE L2 3193 3265 -7 320 321 41 129 chr13 13972259 13972577 -87900592 + L2 LINE L2 2983 3272 0 295 279 104 78 chr13 13973370 13973485 -87899684 + LTR16C LTR ERVL 185 296 -195 2218 110 0 13 chr13 13973485 13973784 -87899385 + AluSx SINE Alu 1 295 -17 295 279 104 78 chr13 13973784 13973937 -87899232 + LTR16C LTR ERVL 296 460 -31 410 256 45 75 chr13 13973990 13974022 -87899147 + L2 LINE L2 3113 3144 -169 255 79 0 0 chr13 13974022 13974060 -87899109 + (TA)n Simple_repeat Simple_repeat 2 39 0 2309 96 0 7 chr13 13974063 13974365 -87898804 - AluY SINE Alu -11 300 1 410 256 45 75 chr13 13974365 13974527 -87898642 + L2 LINE L2 3146 3305 -8 267 265 166 60 chr13 13975515 13975666 -87897503 - MER5A DNA MER1_type -22 167 1 2372 94 0 3 chr13 13976654 13976953 -87896216 + AluSp SINE Alu 1 298 -15 269 125 0 0 chr13 13976953 13976993 -87896176 + HsTC2 DNA Tc2 15 54 -1844 387 233 82 80 chr13 13977243 13977432 -87895737 - L1ME3 LINE L1 -281 5881 5681 2641 150 51 54 chr13 13977562 13978114 -87895055 - L1MA6 LINE L1 0 6300 5751 * 7407 214 20 7 chr13 13978109 13979990 -87893179 - L1M2 LINE L1 -2348 4819 2915 296 129 18 33 chr13 13980171 13980231 -87892938 - L1M2 LINE L1 -4299 2869 2383 * 768 155 61 30 chr13 13980205 13980365 -87892804 - L1M2 LINE L1 -6609 559 2 668 290 84 20 chr13 13980377 13980867 -87892302 - L1M4 LINE L1 -976 5170 4650 2533 103 96 5 chr13 13980868 13981274 -87891895 + LTR7 LTR ERV1 1 443 -7 1118 281 91 31 chr13 13981280 13982202 -87890967 - L1M4 LINE L1 -1492 4654 3678 396 273 23 2 chr13 13982311 13982487 -87890682 - MIR SINE MIR -29 233 13 991 181 0 28 chr13 13985110 13985292 -87887877 + AluJb SINE Alu 136 312 0 2997 34 7 3 chr13 13985558 13985963 -87887206 - MER11A LTR ERVK -762 504 1 6319 177 38 5 chr13 13985963 13987060 -87886109 - L1 LINE L1 -5489 2076 943 2250 125 0 0 chr13 13987540 13987845 -87885324 + AluSx SINE Alu 1 305 -7 3173 153 149 17 chr13 13987933 13988248 -87884921 + LTR8A LTR ERV1 1 273 -454 210 37 0 0 chr13 13988248 13988275 -87884894 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3173 153 149 17 chr13 13988275 13988601 -87884568 + LTR8A LTR ERV1 273 727 0 564 267 35 6 chr13 13989302 13989359 -87883810 + L1M4b LINE L1 1 55 -6804 198 0 0 0 chr13 13989359 13989381 -87883788 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 564 267 35 6 chr13 13989381 13989495 -87883674 + L1M4b LINE L1 55 177 -6682 25 65 0 0 chr13 13989495 13989541 -87883628 + AT_rich Low_complexity Low_complexity 1 46 0 39553 75 4 3 chr13 13989542 13995647 -87877522 - L1PA5 LINE L1 -9 6145 5 6078 207 54 73 chr13 13995872 13997589 -87875580 + L1M4b LINE L1 182 1882 -4973 2928 154 16 13 chr13 13997654 13998040 -87875129 + L1MA9 LINE L1 5098 5489 -802 2797 19 0 0 chr13 13998040 13998347 -87874822 + AluYa5 SINE Alu 1 307 -4 2928 154 16 13 chr13 13998347 13998639 -87874530 + L1MA9 LINE L1 5489 5779 -512 246 217 17 33 chr13 13998673 13998793 -87874376 + (TATATG)n Simple_repeat Simple_repeat 5 122 0 2102 144 39 23 chr13 13998795 13999183 -87873986 + L1MA9 LINE L1 5780 6173 -139 2336 147 48 5 chr13 13999195 13999590 -87873579 + MSTB LTR MaLR 8 419 -7 761 134 56 0 chr13 13999590 13999732 -87873437 + L1MA9 LINE L1 6161 6310 -2 1023 268 57 16 chr13 13999756 14000122 -87873047 + L1M4b LINE L1 2028 2408 -4551 647 121 0 0 chr13 14000158 14000257 -87872912 - L1PA8 LINE L1 0 6172 6074 6114 229 58 71 chr13 14000395 14000840 -87872329 + L1M4b LINE L1 2473 2922 -4035 3805 91 0 6 chr13 14000840 14001354 -87871815 + MER9 LTR ERVK 1 511 0 6114 229 58 71 chr13 14001354 14003803 -87869366 + L1M4b LINE L1 2922 5268 -1689 398 204 9 80 chr13 14003918 14004031 -87869138 + MIR SINE MIR 52 156 -106 875 312 60 10 chr13 14004207 14004684 -87868485 + L2 LINE L2 2644 3154 -159 664 288 41 0 chr13 14004707 14004926 -87868243 + LTR16A LTR ERVL 57 284 -166 497 262 55 18 chr13 14005001 14005165 -87868004 + L2 LINE L2 3140 3309 -4 279 0 0 0 chr13 14005422 14005453 -87867716 + (TA)n Simple_repeat Simple_repeat 1 31 0 444 118 0 0 chr13 14005981 14006049 -87867120 + (TA)n Simple_repeat Simple_repeat 1 68 0 310 27 0 0 chr13 14006137 14006174 -87866995 + PABL_A-int LTR ERV1 1667 1703 -3312 262 219 0 130 chr13 14007173 14007203 -87865966 + L1MEc LINE L1 1257 1289 -5107 1931 122 4 7 chr13 14007203 14007473 -87865696 - AluSx SINE Alu -43 269 1 262 219 0 130 chr13 14007473 14007518 -87865651 + L1MEc LINE L1 1289 1307 -5089 2066 120 17 10 chr13 14007518 14007819 -87865350 + AluSx SINE Alu 1 303 -9 262 219 0 130 chr13 14007819 14007888 -87865281 + L1MEc LINE L1 1307 1383 -5013 336 263 102 54 chr13 14007914 14008100 -87865069 + L1MC/D LINE L1 5592 5786 -2022 268 292 42 25 chr13 14008578 14008698 -87864471 + LTR16C LTR ERVL 370 491 0 233 169 17 0 chr13 14008801 14008860 -87864309 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 184 381 129 14 chr13 14009207 14009417 -87863752 - L2 LINE L2 -475 2839 2606 2102 89 11 11 chr13 14010279 14010561 -87862608 - AluSx SINE Alu -30 282 1 360 295 162 6 chr13 14010892 14011090 -87862079 - MLT1J1 LTR MaLR -125 325 105 1869 152 10 3 chr13 14011341 14011643 -87861526 + AluSx SINE Alu 1 304 -8 412 224 48 34 chr13 14012024 14012171 -87860998 - MER53 DNA DNA -40 149 1 706 322 22 0 chr13 14012273 14012500 -87860669 + MIR SINE MIR 3 234 -28 562 200 75 0 chr13 14013138 14013258 -87859911 - MER5A DNA MER1_type 0 189 61 1874 44 0 18 chr13 14013264 14013492 -87859677 - AluY SINE Alu 0 311 88 331 263 0 0 chr13 14014112 14014188 -87858981 + MER5A DNA MER1_type 1 76 -113 2623 61 0 0 chr13 14014188 14014498 -87858671 + AluSg SINE Alu 1 310 0 865 274 36 36 chr13 14014545 14014874 -87858295 + MER110 LTR ERV1 151 479 -12 720 214 83 45 chr13 14015059 14015396 -87857773 - Charlie2 DNA MER1_type -38 2824 2475 12222 195 19 28 chr13 14015398 14017767 -87855402 - L1PA16 LINE L1 -3 6866 4477 2049 153 0 0 chr13 14017767 14018067 -87855102 - AluSx SINE Alu -12 300 1 12222 195 19 28 chr13 14018067 14019707 -87853462 - L1PA16 LINE L1 -2392 4477 2896 1952 97 31 0 chr13 14019707 14019965 -87853204 - AluSx SINE Alu -11 301 36 12222 195 19 28 chr13 14019965 14020128 -87853041 - L1PA16 LINE L1 -3973 2896 2733 1101 211 115 40 chr13 14020128 14020597 -87852572 - Charlie2 DNA MER1_type -381 2481 1978 610 167 15 38 chr13 14020705 14020837 -87852332 - Charlie2 DNA MER1_type -878 1984 1856 639 260 112 30 chr13 14020847 14021143 -87852026 - Charlie2 DNA MER1_type -2542 320 1 213 300 75 12 chr13 14021925 14022005 -87851164 + MIR SINE MIR 82 166 -96 2366 122 67 10 chr13 14022093 14022496 -87850673 - MSTB LTR MaLR 0 426 1 2311 231 44 26 chr13 14022496 14022640 -87850529 + L1MC4a LINE L1 6407 6547 -1261 258 32 0 0 chr13 14022640 14022671 -87850498 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 2311 231 44 26 chr13 14022671 14023141 -87850028 + L1MC4a LINE L1 6547 7032 -776 2275 93 0 3 chr13 14023147 14023457 -87849712 - AluY SINE Alu -2 309 1 1940 106 0 34 chr13 14023464 14023826 -87849343 - AluSx SINE Alu 0 352 1 30 27 0 0 chr13 14023927 14023964 -87849205 + AT_rich Low_complexity Low_complexity 1 37 0 191 301 24 36 chr13 14024363 14024446 -87848723 - MIR SINE MIR -48 214 133 2146 108 24 0 chr13 14024475 14024770 -87848399 - AluSg SINE Alu -8 302 1 197 320 100 61 chr13 14025107 14025338 -87847831 - MIR SINE MIR -17 245 6 2043 136 10 0 chr13 14025665 14025960 -87847209 + AluSx SINE Alu 3 300 -12 453 363 25 6 chr13 14027813 14027970 -87845199 + MIR3 SINE MIR 17 176 -32 184 271 42 0 chr13 14029590 14029638 -87843531 + L3b LINE CR1 1423 1472 -111 414 0 0 0 chr13 14031289 14031335 -87841834 + (TG)n Simple_repeat Simple_repeat 1 46 0 23 68 0 0 chr13 14031465 14031509 -87841660 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 14031556 14031577 -87841592 + AT_rich Low_complexity Low_complexity 1 21 0 618 245 47 52 chr13 14032039 14032191 -87840978 - MER20 DNA MER1_type -8 211 59 1948 161 0 7 chr13 14032191 14032495 -87840674 + AluJb SINE Alu 1 302 -10 618 245 47 52 chr13 14032495 14032554 -87840615 - MER20 DNA MER1_type -160 59 1 241 209 30 15 chr13 14032722 14032789 -87840380 + Charlie7 DNA MER1_type 34 101 -2511 180 77 0 0 chr13 14032922 14032948 -87840221 + (CATATA)n Simple_repeat Simple_repeat 3 28 0 21 36 0 0 chr13 14034080 14034108 -87839061 + AT_rich Low_complexity Low_complexity 1 28 0 1732 185 3 0 chr13 14034325 14034623 -87838546 + AluJo SINE Alu 3 301 -11 180 265 68 77 chr13 14034947 14035064 -87838105 - MIR SINE MIR -71 191 76 193 292 250 0 chr13 14035078 14035174 -87837995 - L2 LINE L2 -16 3256 3137 1938 119 4 8 chr13 14035188 14035456 -87837713 + AluSx SINE Alu 3 269 -43 310 27 0 0 chr13 14036485 14036522 -87836647 - PABL_A-int LTR ERV1 -3312 1703 1667 301 229 8 115 chr13 14036627 14036749 -87836420 - L1MC4 LINE L1 -1339 6703 6595 297 0 0 0 chr13 14037208 14037241 -87835928 + (TA)n Simple_repeat Simple_repeat 1 33 0 497 262 55 18 chr13 14037498 14037662 -87835507 - L2 LINE L2 -4 3309 3140 664 288 41 0 chr13 14037737 14037956 -87835213 - LTR16A LTR ERVL -166 284 57 859 315 60 10 chr13 14037979 14038456 -87834713 - L2 LINE L2 -159 3154 2644 412 195 9 80 chr13 14038632 14038745 -87834424 - MIR SINE MIR -106 156 52 6114 229 58 71 chr13 14038860 14041309 -87831860 - L1MEc LINE L1 -1689 4693 2347 3827 89 0 6 chr13 14041309 14041823 -87831346 - MER9 LTR ERVK 0 511 1 6114 229 58 71 chr13 14041823 14042268 -87830901 - L1MEc LINE L1 -4035 2347 1898 673 111 0 0 chr13 14042406 14042505 -87830664 + L1PA8 LINE L1 6074 6172 0 1023 268 57 16 chr13 14042541 14042907 -87830262 - L1MEc LINE L1 -4551 1833 1453 761 134 56 0 chr13 14042931 14043073 -87830096 - L1MA9 LINE L1 -2 6310 6161 2379 142 48 5 chr13 14043073 14043468 -87829701 - MSTB LTR MaLR -7 419 8 2102 144 39 23 chr13 14043480 14043868 -87829301 - L1MA9 LINE L1 -139 6173 5780 267 208 17 33 chr13 14043870 14043990 -87829179 + (CATATA)n Simple_repeat Simple_repeat 5 122 0 2218 145 25 23 chr13 14044024 14044316 -87828853 - L1MA9 LINE L1 -512 5779 5484 2816 16 0 0 chr13 14044316 14044623 -87828546 - AluYa5 SINE Alu -4 307 1 2218 145 25 23 chr13 14044623 14044724 -87828445 - L1MA9 LINE L1 -807 5484 5385 1035 190 12 40 chr13 14044828 14044885 -87828284 + L1MC4a LINE L1 7038 7095 -713 2408 69 3 31 chr13 14044885 14045204 -87827965 + AluSp SINE Alu 1 310 -3 1035 190 12 40 chr13 14045204 14045399 -87827770 + L1MC4a LINE L1 7095 7283 -525 578 260 123 67 chr13 14045409 14045782 -87827387 + MER20B DNA MER1_type 36 429 -354 708 233 52 13 chr13 14045808 14046040 -87827129 + MER20B DNA MER1_type 499 739 -44 1926 211 12 5 chr13 14046042 14046618 -87826551 + L1M3 LINE L1 4891 5471 -709 3488 168 33 7 chr13 14046627 14047325 -87825844 - L1MB3 LINE L1 -1 6418 5703 388 184 61 0 chr13 14047327 14047425 -87825744 - L1MB3 LINE L1 -1635 4747 4644 * 1318 145 21 34 chr13 14047424 14047684 -87825485 - L1M3 LINE L1 -716 5464 5202 2025 116 46 17 chr13 14047684 14047986 -87825183 - AluSx SINE Alu -1 311 1 1318 145 21 34 chr13 14047986 14048158 -87825011 - L1M3 LINE L1 -978 5202 5041 1900 128 39 3 chr13 14048158 14048493 -87824676 - L1MA8 LINE L1 -5 6286 5940 1318 145 21 34 chr13 14048493 14048513 -87824656 - L1M3 LINE L1 -1139 5041 5022 2011 168 5 36 chr13 14048515 14048655 -87824514 - LTR44 LTR ERV1 -114 405 262 2376 74 0 19 chr13 14048655 14048967 -87824202 + AluY SINE Alu 1 306 -5 2011 168 5 36 chr13 14048967 14049244 -87823925 - LTR44 LTR ERV1 -257 262 1 1046 247 23 9 chr13 14049245 14049589 -87823580 - L1MB3 LINE L1 -3688 2694 2346 5359 194 120 21 chr13 14049733 14051144 -87822025 - L1MB3 LINE L1 -4605 1779 230 2315 179 7 11 chr13 14051153 14051690 -87821479 + L1MB5 LINE L1 5518 6119 -55 300 167 0 0 chr13 14051786 14051846 -87821323 + L1MB5 LINE L1 6115 6174 0 641 132 0 0 chr13 14051903 14052009 -87821160 + L1MA4 LINE L1 6189 6294 -6 2615 22 38 0 chr13 14052209 14052522 -87820647 + L1PA4 LINE L1 5828 6152 -3 6763 72 3 2 chr13 14054241 14055825 -87817344 + L1PA7 LINE L1 4558 6143 -11 263 208 42 0 chr13 14056140 14056188 -87816981 - MIR SINE MIR -64 144 95 4336 51 0 0 chr13 14056325 14056858 -87816311 - L1PA5 LINE L1 0 6154 5622 336 323 126 12 chr13 14056863 14057030 -87816139 - MIR SINE MIR -56 206 21 256 237 18 26 chr13 14057706 14057820 -87815349 + L1MC/D LINE L1 5792 5904 -1904 210 305 221 0 chr13 14058765 14058860 -87814309 - MIR SINE MIR -71 137 22 2022 109 0 18 chr13 14059154 14059464 -87813705 - AluSg SINE Alu 0 305 1 755 306 69 34 chr13 14060711 14061119 -87812050 - ERVL LTR ERVL -430 5334 4913 514 306 0 6 chr13 14061135 14061295 -87811874 - ERVL LTR ERVL -1557 4207 4049 373 289 74 110 chr13 14061481 14061872 -87811297 - LTR67 LTR ERVL -179 378 2 198 0 0 0 chr13 14062539 14062561 -87810608 + (TA)n Simple_repeat Simple_repeat 1 22 0 288 387 29 7 chr13 14062700 14062837 -87810332 - MIR SINE MIR -66 142 3 202 277 24 60 chr13 14062837 14062874 -87810295 + L2 LINE L2 3272 3305 -8 2787 10 0 0 chr13 14062992 14063297 -87809872 + AluYa5 SINE Alu 1 305 -6 1546 199 104 12 chr13 14063727 14064150 -87809019 - MLT1C LTR MaLR 0 467 6 1009 215 12 4 chr13 14064710 14064961 -87808208 + L1M4 LINE L1 3996 4248 -1898 1593 161 25 0 chr13 14064988 14065274 -87807895 - MER2 DNA MER2_type 0 345 53 17823 126 12 91 chr13 14065274 14067596 -87805573 + L1P3 LINE L1 32 1976 -4485 2253 98 3 0 chr13 14067596 14067891 -87805278 - AluY SINE Alu -15 296 1 17823 126 12 91 chr13 14067891 14070028 -87803141 + L1P3 LINE L1 1976 4280 -2181 1998 66 3 0 chr13 14070027 14070314 -87802855 + L1P LINE L1 5257 5544 -917 * 468 193 26 0 chr13 14070307 14070421 -87802748 - L1MC3 LINE L1 -204 7581 7465 * 317 102 0 0 chr13 14070420 14070469 -87802700 - L1M1 LINE L1 -480 5825 5777 * 3282 67 0 0 chr13 14070469 14070889 -87802280 - L1PA7 LINE L1 -6 6148 5729 370 160 53 75 chr13 14070889 14070983 -87802186 + L1M3c LINE L1 1395 1486 -4655 577 139 0 0 chr13 14070988 14071067 -87802102 - AluS SINE Alu -234 79 1 296 292 46 0 chr13 14071173 14071303 -87801866 + L1M4 LINE L1 5142 5277 -869 2247 62 9 3 chr13 14071305 14071653 -87801516 - L1PA7 LINE L1 -2 6152 5644 495 17 0 0 chr13 14071636 14071696 -87801473 - L1P2 LINE L1 -353 5801 5742 * 538 60 13 1 chr13 14071696 14071783 -87801386 - L1M1 LINE L1 -504 5787 5701 378 327 68 15 chr13 14071776 14072042 -87801127 - L1M3f LINE L1 -5033 295 16 * 400 210 30 0 chr13 14072069 14072169 -87801000 + L1MC3 LINE L1 7368 7470 -315 1872 279 49 3 chr13 14072431 14073063 -87800106 + L1M3b LINE L1 2097 2757 -4739 1338 148 12 121 chr13 14073085 14073423 -87799746 - AluSx SINE Alu 0 302 2 720 213 29 33 chr13 14073424 14073697 -87799472 + L1M3b LINE L1 3341 3612 -3953 1116 161 97 13 chr13 14075164 14075462 -87797707 - MER33 DNA MER1_type -1 323 1 209 356 94 19 chr13 14075547 14075707 -87797462 + MIR SINE MIR 34 205 -57 216 0 0 0 chr13 14077029 14077053 -87796116 + (T)n Simple_repeat Simple_repeat 1 24 0 423 311 149 45 chr13 14077717 14077784 -87795385 + L2 LINE L2 2581 2640 -632 1113 233 122 34 chr13 14077784 14078201 -87794968 - MSTB2 LTR MaLR -3 454 1 423 311 149 45 chr13 14078201 14078760 -87794409 + L2 LINE L2 2640 3272 0 483 256 56 42 chr13 14080106 14080304 -87792865 + MIR3 SINE MIR 20 206 -33 328 358 17 6 chr13 14080888 14081064 -87792105 + L3 LINE CR1 1289 1466 -111 375 261 212 6 chr13 14081436 14081601 -87791568 + MIR SINE MIR 2 200 -62 229 282 23 69 chr13 14081652 14081783 -87791386 - MIR SINE MIR -41 221 97 252 264 56 14 chr13 14081953 14082025 -87791144 + L2 LINE L2 3234 3308 -5 195 42 0 0 chr13 14082817 14082841 -87790328 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 691 323 183 19 chr13 14082915 14083609 -87789560 + L2 LINE L2 472 1279 -2035 188 275 100 38 chr13 14083622 14083702 -87789467 + L2 LINE L2 1383 1467 -1847 879 296 136 34 chr13 14083872 14084275 -87788894 + L3 LINE CR1 492 981 -596 591 73 0 0 chr13 14084275 14084357 -87788812 + L1PA8 LINE L1 6077 6158 -14 879 296 136 34 chr13 14084357 14084572 -87788597 + L3 LINE CR1 981 1173 -404 439 246 11 109 chr13 14084687 14084870 -87788299 + MIR SINE MIR 95 259 -3 767 205 126 40 chr13 14085597 14085947 -87787222 - MSTC LTR MaLR -3 425 12 3722 126 48 3 chr13 14086039 14086644 -87786525 + L1PB4 LINE L1 5522 6153 -3 197 269 65 65 chr13 14086662 14086755 -87786414 + L2 LINE L2 1697 1789 -1525 227 336 26 9 chr13 14086923 14087036 -87786133 + L2 LINE L2 1803 1917 -1397 292 154 308 0 chr13 14087103 14087207 -87785962 - L1MA9 LINE L1 0 6312 6177 252 164 16 49 chr13 14087500 14087561 -87785608 + MLT1J LTR MaLR 232 290 -221 607 107 89 0 chr13 14088064 14088176 -87784993 - L1MCa LINE L1 -4756 1670 1549 * 1862 186 72 62 chr13 14088167 14088679 -87784490 - L1MCa LINE L1 -5901 525 9 259 277 88 140 chr13 14088685 14089199 -87783970 + L2 LINE L2 2547 3029 -243 634 249 29 0 chr13 14089516 14089721 -87783448 - L1ME4a LINE L1 -278 5843 5633 4972 71 7 5 chr13 14089759 14090432 -87782737 - L1PA7 LINE L1 -3 6151 5477 1706 181 13 50 chr13 14090533 14090914 -87782255 - MER41C LTR ERV1 -187 367 1 8929 158 17 11 chr13 14090914 14092544 -87780625 - MER41C-int LTR ERV1 0 7756 6117 1047 205 57 84 chr13 14092772 14093226 -87779943 + MER39 LTR ERV1 67 703 -4 38 22 0 0 chr13 14093580 14093625 -87779544 + AT_rich Low_complexity Low_complexity 1 45 0 2161 268 3 10 chr13 14093744 14094363 -87778806 - HERVL-B3 LTR ERVL -5039 615 1 1971 196 69 37 chr13 14094363 14094827 -87778342 - MLT2B3 LTR ERVL 0 554 76 370 183 0 0 chr13 14094925 14094996 -87778173 - MLT2B3 LTR ERVL -483 71 1 2556 134 60 0 chr13 14096038 14096440 -87776729 + MSTB LTR MaLR 1 426 0 2273 72 0 10 chr13 14098542 14098847 -87774322 - L1PA5 LINE L1 -1 6153 5852 6777 59 5 6 chr13 14099367 14100255 -87772914 + L1PA8 LINE L1 5284 6170 -2 21 0 0 0 chr13 14100896 14100917 -87772252 + AT_rich Low_complexity Low_complexity 1 21 0 2060 151 0 0 chr13 14100923 14101221 -87771948 + AluSx SINE Alu 1 298 -14 501 204 0 76 chr13 14101976 14102108 -87771061 + MLT1E LTR MaLR 1 122 -471 * 748 196 33 7 chr13 14102088 14102241 -87770928 + Tigger3(Golem) DNA MER2_type 2873 3029 0 561 228 73 0 chr13 14102241 14102363 -87770806 - MER2 DNA MER2_type -214 131 1 311 294 0 0 chr13 14102367 14102459 -87770710 - L1M4 LINE L1 -1119 5027 4936 283 253 61 78 chr13 14102805 14103050 -87770119 + L1M4 LINE L1 1307 1547 -4837 3490 209 53 48 chr13 14103171 14103660 -87769509 + L1M4 LINE L1 4122 4607 -1775 1537 163 48 0 chr13 14103660 14103912 -87769257 - AluJo SINE Alu -22 290 27 3490 209 53 48 chr13 14103912 14104559 -87768610 + L1M4 LINE L1 4607 5264 -1118 1647 142 83 10 chr13 14105515 14105697 -87767472 - AluSg SINE Alu 0 310 98 549 0 0 0 chr13 14105697 14105758 -87767411 + (TG)n Simple_repeat Simple_repeat 2 62 0 1647 142 83 10 chr13 14105758 14105864 -87767305 - AluSg SINE Alu -212 98 1 268 351 163 21 chr13 14106126 14106684 -87766485 + L2 LINE L2 2248 2884 -430 2217 51 0 48 chr13 14108391 14108686 -87764483 + AluY SINE Alu 15 295 -16 271 265 0 0 chr13 14108686 14108754 -87764415 - MLT1I LTR MaLR -244 165 98 660 111 0 0 chr13 14109065 14109155 -87764014 - AluSq SINE Alu -73 240 151 675 291 98 22 chr13 14109405 14110219 -87762950 - L1MEd LINE L1 -870 1620 665 1519 180 74 18 chr13 14110761 14111045 -87762124 + AluJo SINE Alu 3 302 -10 24 53 0 0 chr13 14115035 14115073 -87758096 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 14115127 14115148 -87758021 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 14115907 14115928 -87757241 + AT_rich Low_complexity Low_complexity 1 21 0 2058 122 24 7 chr13 14117553 14117847 -87755322 + AluSx SINE Alu 1 299 -13 605 260 130 21 chr13 14118579 14118864 -87754305 + MER46C DNA MER2_type 2 317 -21 2216 119 0 3 chr13 14119247 14119542 -87753627 + AluSx SINE Alu 1 294 -18 238 363 26 9 chr13 14120304 14120417 -87752752 + MIR3 SINE MIR 9 123 -85 361 276 64 32 chr13 14120449 14120605 -87752564 - MER5A DNA MER1_type -28 161 1 592 244 62 43 chr13 14122188 14122446 -87750723 + L1MDa LINE L1 1396 1658 -4882 471 291 12 6 chr13 14122519 14122684 -87750485 + L1ME2 LINE L1 5998 6163 -1 335 282 35 101 chr13 14122706 14122933 -87750236 + L1MC4 LINE L1 7822 8033 -9 2256 116 0 3 chr13 14123093 14123404 -87749765 + AluSg SINE Alu 1 310 0 287 173 111 0 chr13 14125050 14125131 -87748038 - L1MB2 LINE L1 0 6171 6082 1503 277 44 36 chr13 14127539 14128184 -87744985 - L1ME3A LINE L1 -337 5833 5181 1945 114 3 55 chr13 14128184 14128491 -87744678 + AluSc SINE Alu 1 291 -18 1503 277 44 36 chr13 14128491 14128688 -87744481 - L1ME3A LINE L1 -989 5181 4987 1329 276 131 13 chr13 14128723 14129516 -87743653 - L1ME3A LINE L1 -1296 4850 3964 395 310 84 53 chr13 14130062 14130385 -87742784 - L2 LINE L2 -1229 2085 1753 2131 124 0 7 chr13 14130491 14130782 -87742387 + AluSq SINE Alu 1 289 -24 199 196 54 54 chr13 14132345 14132401 -87740768 + L2 LINE L2 3217 3272 0 2206 121 0 0 chr13 14133732 14134030 -87739139 + AluSx SINE Alu 1 298 -14 759 276 27 0 chr13 14134480 14134665 -87738504 - MIR SINE MIR -26 236 47 326 262 105 17 chr13 14134704 14134876 -87738293 - MER112 DNA MER1_type -14 246 60 183 203 0 0 chr13 14134886 14134950 -87738219 + (TG)n Simple_repeat Simple_repeat 2 65 0 2077 132 10 0 chr13 14136105 14136400 -87736769 - AluSx SINE Alu -12 300 3 208 320 100 61 chr13 14136727 14136958 -87736211 + MIR SINE MIR 6 245 -17 2168 108 24 0 chr13 14137295 14137590 -87735579 + AluSg SINE Alu 1 302 -8 192 301 24 36 chr13 14137619 14137702 -87735467 + MIR SINE MIR 133 214 -48 30 27 0 0 chr13 14138101 14138138 -87735031 + AT_rich Low_complexity Low_complexity 1 37 0 2182 92 3 33 chr13 14138239 14138544 -87734625 + AluSq SINE Alu 1 296 -17 640 258 185 53 chr13 14138575 14138859 -87734310 - L2 LINE L2 0 3313 3068 639 0 0 0 chr13 14138859 14138930 -87734239 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 640 258 185 53 chr13 14138930 14139112 -87734057 - L2 LINE L2 -245 3068 2791 303 331 27 20 chr13 14139307 14139455 -87733714 + L2 LINE L2 2917 3065 -207 270 0 0 0 chr13 14139557 14139587 -87733582 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2221 88 0 7 chr13 14139589 14139874 -87733295 - AluSq SINE Alu -30 283 1 199 292 250 0 chr13 14139886 14139982 -87733187 + L2 LINE L2 3137 3256 -16 180 265 68 77 chr13 14139996 14140113 -87733056 + MIR SINE MIR 76 191 -71 1751 185 3 0 chr13 14140437 14140735 -87732434 - AluJo SINE Alu -11 301 3 21 36 0 0 chr13 14140952 14140980 -87732189 + AT_rich Low_complexity Low_complexity 1 28 0 180 77 0 0 chr13 14142112 14142138 -87731031 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 794 226 14 42 chr13 14142506 14142565 -87730604 + MER20 DNA MER1_type 1 60 -159 2005 158 0 7 chr13 14142565 14142869 -87730300 - AluJb SINE Alu -10 302 1 794 226 14 42 chr13 14142869 14143026 -87730143 + MER20 DNA MER1_type 60 211 -8 21 0 0 0 chr13 14143485 14143506 -87729663 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 14143553 14143597 -87729572 + AT_rich Low_complexity Low_complexity 1 44 0 414 0 0 0 chr13 14143727 14143773 -87729396 + (CA)n Simple_repeat Simple_repeat 1 46 0 182 271 42 0 chr13 14145424 14145472 -87727697 - L3b LINE CR1 -111 1472 1423 451 363 25 6 chr13 14147092 14147249 -87725920 - MIR3 SINE MIR -32 176 17 284 290 91 53 chr13 14147921 14148092 -87725077 - MIR SINE MIR -67 141 9 460 254 107 54 chr13 14148513 14148737 -87724432 - L2 LINE L2 0 3313 3078 1015 355 178 11 chr13 14148786 14149841 -87723328 - L3 LINE CR1 -225 1352 122 1386 192 39 42 chr13 14150710 14150992 -87722177 + MER1B DNA MER1_type 1 283 -2429 1873 163 13 16 chr13 14150992 14151305 -87721864 + AluSx SINE Alu 1 312 0 1386 192 39 42 chr13 14151305 14151330 -87721839 + MER1B DNA MER1_type 283 307 -32 287 173 111 0 chr13 14152950 14153031 -87720138 - L1MB2 LINE L1 0 6171 6082 858 159 0 25 chr13 14155052 14155209 -87717960 - MER20 DNA MER1_type -66 153 1 1032 52 29 29 chr13 14155521 14155695 -87717474 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 1802 176 6 16 chr13 14155729 14156042 -87717127 - AluJb SINE Alu -2 310 1 314 285 90 35 chr13 14156044 14156188 -87716981 + MIR SINE MIR 94 245 -17 1918 107 0 0 chr13 14158610 14158863 -87714306 - AluSx SINE Alu -13 299 47 333 333 81 16 chr13 14158869 14158992 -87714177 + L2 LINE L2 3139 3269 -3 22 35 0 0 chr13 14159326 14159355 -87713814 + AT_rich Low_complexity Low_complexity 1 29 0 683 227 53 0 chr13 14160285 14160435 -87712734 - MER5A DNA MER1_type 0 189 32 217 301 163 39 chr13 14160493 14160646 -87712523 + MIR SINE MIR 20 191 -71 406 330 153 5 chr13 14160662 14160877 -87712292 + MIR SINE MIR 10 256 -6 226 322 17 0 chr13 14163075 14163134 -87710035 - L2 LINE L2 -10 3262 3203 2077 116 0 42 chr13 14163277 14163610 -87709559 - AluSq SINE Alu 0 313 1 430 349 57 6 chr13 14164550 14164725 -87708444 - MER5A DNA MER1_type -5 184 1 24 53 0 0 chr13 14166906 14166944 -87706225 + AT_rich Low_complexity Low_complexity 1 38 0 2126 137 0 3 chr13 14167111 14167424 -87705745 - AluSx SINE Alu 0 312 1 234 310 28 0 chr13 14167456 14167527 -87705642 - L2 LINE L2 -3 3269 3197 26 30 0 0 chr13 14168050 14168083 -87705086 + AT_rich Low_complexity Low_complexity 1 33 0 783 290 131 11 chr13 14170014 14170456 -87702713 - L2 LINE L2 -8 3305 2811 224 200 60 0 chr13 14171069 14171119 -87702050 + MIR SINE MIR 96 148 -114 401 0 20 0 chr13 14173844 14173893 -87699276 + (CA)n Simple_repeat Simple_repeat 2 51 0 386 336 77 65 chr13 14173899 14174316 -87698853 - L2 LINE L2 0 3272 2851 186 71 0 0 chr13 14174372 14174400 -87698769 + (CA)n Simple_repeat Simple_repeat 1 28 0 430 191 40 32 chr13 14174500 14174626 -87698543 - L1MC3 LINE L1 -8 7777 7651 2138 125 0 0 chr13 14174637 14174933 -87698236 - AluSx SINE Alu -16 296 1 21 57 0 0 chr13 14175396 14175431 -87697738 + AT_rich Low_complexity Low_complexity 1 35 0 2427 26 0 0 chr13 14175522 14175794 -87697375 - AluY SINE Alu -1 310 39 40 37 0 0 chr13 14175870 14175924 -87697245 + AT_rich Low_complexity Low_complexity 1 54 0 1985 132 55 17 chr13 14176272 14176620 -87696549 + MER46B DNA MER2_type 1 236 0 241 339 66 25 chr13 14177186 14177307 -87695862 + MER5B DNA MER1_type 51 176 -2 180 365 58 0 chr13 14177588 14177692 -87695477 + L2 LINE L2 3156 3265 -7 2099 116 0 11 chr13 14178714 14178998 -87694171 - AluSx SINE Alu -31 281 1 233 346 176 0 chr13 14179081 14179217 -87693952 + MIR3 SINE MIR 38 197 -11 525 165 18 9 chr13 14179268 14179377 -87693792 - MLT1B LTR MaLR -76 314 205 2197 91 0 7 chr13 14179799 14180085 -87693084 + AluY SINE Alu 28 311 0 256 158 0 0 chr13 14180108 14180146 -87693023 + 5S rRNA rRNA 1 38 -83 346 290 0 35 chr13 14180408 14180577 -87692592 + A-rich Low_complexity Low_complexity 2 164 0 2495 76 0 0 chr13 14184995 14185299 -87687870 - AluY SINE Alu -7 304 1 269 348 109 0 chr13 14185889 14185981 -87687188 + MIR SINE MIR 38 139 -69 383 311 67 21 chr13 14186594 14186877 -87686292 + L2 LINE L2 1579 1874 -1440 289 94 19 19 chr13 14186888 14186941 -87686228 + MST-int LTR MaLR 1334 1386 -265 219 370 58 22 chr13 14186963 14187241 -87685928 + L2 LINE L2 1918 2205 -1109 469 221 28 142 chr13 14187307 14187379 -87685790 - Charlie7 DNA MER1_type -452 2160 2081 1730 159 3 10 chr13 14187379 14187668 -87685501 + AluJb SINE Alu 1 287 -25 2319 101 0 3 chr13 14187675 14187973 -87685196 + AluSq SINE Alu 1 297 -16 469 221 28 142 chr13 14187973 14188145 -87685024 - Charlie7 DNA MER1_type -537 2075 1937 180 111 0 0 chr13 14188694 14188721 -87684448 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2131 178 45 21 chr13 14188814 14189236 -87683933 + MSTB1 LTR MaLR 1 432 0 7452 210 33 16 chr13 14189236 14190859 -87682310 + MSTB1-int LTR MaLR 1 1651 0 2294 174 30 16 chr13 14190859 14191285 -87681884 + MSTB1 LTR MaLR 1 432 0 482 249 59 63 chr13 14192124 14192361 -87680808 - L2 LINE L2 0 3313 3078 22 0 0 0 chr13 14192443 14192465 -87680704 + AT_rich Low_complexity Low_complexity 1 22 0 1884 167 3 13 chr13 14192649 14192961 -87680208 - AluSx SINE Alu -3 309 1 218 294 15 0 chr13 14192997 14193065 -87680104 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 332 296 10 0 chr13 14193268 14193366 -87679803 + L1MEd LINE L1 657 755 -5364 3134 239 63 26 chr13 14193550 14196197 -87676972 + L1M4 LINE L1 1 3572 -3534 688 167 21 7 chr13 14196200 14196344 -87676825 + L1MA9 LINE L1 6167 6312 0 360 257 71 0 chr13 14196346 14196486 -87676683 + L1MEd LINE L1 908 1057 -5062 500 349 67 21 chr13 14196549 14196833 -87676336 + L1M4 LINE L1 4988 5284 -1822 302 198 74 58 chr13 14196845 14196959 -87676210 + L1M4 LINE L1 5317 5435 -1671 683 227 0 0 chr13 14196959 14197091 -87676078 + FLAM_C SINE Alu 2 133 0 443 321 30 57 chr13 14197118 14197283 -87675886 + L1M4 LINE L1 5546 5703 -1403 2069 97 7 39 chr13 14197283 14197592 -87675577 + AluSx SINE Alu 9 307 -5 443 321 30 57 chr13 14197592 14197688 -87675481 + L1M4 LINE L1 5703 5800 -1306 1123 199 16 29 chr13 14197805 14198121 -87675048 + L1ME LINE L1 568 879 -5191 1116 252 128 43 chr13 14198121 14198581 -87674588 - MLT1D LTR MaLR 0 505 7 673 250 66 48 chr13 14198584 14198916 -87674253 + L1ME LINE L1 868 1205 -4875 537 291 12 6 chr13 14198978 14199143 -87674026 + L1ME2 LINE L1 5998 6163 -1 236 286 57 9 chr13 14199287 14199392 -87673777 + L1MC4 LINE L1 7924 8033 -9 2376 97 0 3 chr13 14199552 14199860 -87673309 + AluSg SINE Alu 1 307 -3 243 0 0 0 chr13 14199860 14199887 -87673282 + (TA)n Simple_repeat Simple_repeat 1 27 0 993 134 13 0 chr13 14199915 14200064 -87673105 + AluSc SINE Alu 139 289 -20 2061 181 15 0 chr13 14200297 14200639 -87672530 - MER7A DNA MER2_type 0 346 2 245 370 0 12 chr13 14201964 14202045 -87671124 - MIR3 SINE MIR -115 93 14 332 206 0 0 chr13 14202179 14202242 -87670927 + L2 LINE L2 3251 3313 0 3390 94 32 2 chr13 14203022 14203491 -87669678 + MER41A LTR ERV1 72 554 0 609 240 135 21 chr13 14203634 14203826 -87669343 + MLT1C LTR MaLR 220 433 -34 260 229 292 42 chr13 14203898 14204042 -87669127 + MER5A DNA MER1_type 10 189 0 739 226 35 48 chr13 14204472 14204702 -87668467 + LTR16A LTR ERVL 209 435 -15 331 295 42 76 chr13 14204773 14204972 -87668197 + MIR SINE MIR 32 222 -40 2520 72 0 0 chr13 14205371 14205676 -87667493 + AluY SINE Alu 1 305 -6 21 57 0 0 chr13 14205707 14205742 -87667427 + AT_rich Low_complexity Low_complexity 1 35 0 2996 156 126 16 chr13 14205913 14206470 -87666699 + LTR26E LTR ERV1 1 618 -4 24 0 0 0 chr13 14209047 14209071 -87664098 + AT_rich Low_complexity Low_complexity 1 24 0 2229 90 7 0 chr13 14209074 14209362 -87663807 + AluSg SINE Alu 1 290 -20 22 35 0 0 chr13 14209467 14209496 -87663673 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 14209688 14209714 -87663455 + AT_rich Low_complexity Low_complexity 1 26 0 1837 150 0 31 chr13 14209849 14210171 -87662998 - AluSx SINE Alu 0 313 1 1409 181 100 15 chr13 14210173 14210443 -87662726 - AluJo SINE Alu -19 293 1 2256 106 0 3 chr13 14210930 14211233 -87661936 + AluSq SINE Alu 1 302 -11 2297 82 0 3 chr13 14211243 14211568 -87661601 + AluY SINE Alu 1 324 0 944 190 0 6 chr13 14212727 14212890 -87660279 + MLT1A2 LTR MaLR 1 162 -212 799 223 23 95 chr13 14212905 14213236 -87659933 + MER77 LTR ERV1 375 729 -7 936 234 62 96 chr13 14213251 14213846 -87659323 + L1MC5 LINE L1 6928 7502 -459 2342 101 0 7 chr13 14213846 14214153 -87659016 + AluSc SINE Alu 1 305 -4 272 200 153 88 chr13 14214271 14214441 -87658728 + L1ME3A LINE L1 5959 6139 -31 1323 203 44 20 chr13 14214462 14214757 -87658412 - AluJo SINE Alu -10 302 1 4604 10 6 0 chr13 14214767 14215258 -87657911 - L1PA2 LINE L1 0 6155 5662 243 343 116 7 chr13 14215258 14215397 -87657772 - L3 LINE CR1 -729 848 691 494 179 0 0 chr13 14215455 14215539 -87657630 + L1ME2 LINE L1 6045 6128 -36 413 278 20 40 chr13 14215618 14215817 -87657352 + MLT1J LTR MaLR 263 442 -8 2193 111 19 3 chr13 14215866 14216173 -87656996 + AluSx SINE Alu 1 312 0 762 122 0 32 chr13 14216185 14216424 -87656745 + AluSx SINE Alu 1 300 -10 325 336 62 0 chr13 14216577 14216705 -87656464 - L3 LINE CR1 -1009 568 433 718 283 78 27 chr13 14216731 14217170 -87655999 - MLT1J LTR MaLR -21 429 1 275 354 62 22 chr13 14217260 14217438 -87655731 - L3 LINE CR1 -1290 287 103 2315 106 0 0 chr13 14217597 14217890 -87655279 - AluSq SINE Alu -20 293 1 1081 194 133 5 chr13 14218418 14218629 -87654540 + MER8 DNA MER2_type 1 238 -1 22 0 0 0 chr13 14218933 14218955 -87654214 + AT_rich Low_complexity Low_complexity 1 22 0 193 133 0 0 chr13 14220233 14220263 -87652906 - L2 LINE L2 -7 3306 3277 5403 97 13 49 chr13 14220354 14220539 -87652630 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 2211 121 0 0 chr13 14220539 14220836 -87652333 - AluSx SINE Alu -15 297 1 5403 97 13 49 chr13 14220836 14221149 -87652020 - Tigger4(Zombi) DNA MER2_type -190 2541 2218 2141 131 3 13 chr13 14221149 14221461 -87651708 + AluSx SINE Alu 1 309 -3 5403 97 13 49 chr13 14221461 14221631 -87651538 - Tigger4(Zombi) DNA MER2_type -513 2218 2097 2240 104 0 3 chr13 14221631 14221930 -87651239 - AluSc SINE Alu -11 298 1 5403 97 13 49 chr13 14221930 14222114 -87651055 - Tigger4(Zombi) DNA MER2_type -634 2097 1908 9527 106 37 81 chr13 14222134 14222824 -87650345 - Tigger4(Zombi) DNA MER2_type -1140 1591 872 858 80 0 9 chr13 14222824 14222937 -87650232 + AluSg/x SINE Alu 190 301 -11 9527 106 37 81 chr13 14222937 14223462 -87649707 - Tigger4(Zombi) DNA MER2_type -1859 872 349 186 103 0 0 chr13 14223462 14223491 -87649678 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9527 106 37 81 chr13 14223491 14223826 -87649343 - Tigger4(Zombi) DNA MER2_type -2382 349 1 233 363 20 20 chr13 14224199 14224301 -87648868 + MIR SINE MIR 22 123 -85 201 323 77 0 chr13 14224679 14224744 -87648425 + L2 LINE L2 3138 3207 -65 683 135 0 0 chr13 14224900 14224996 -87648173 - AluJb SINE Alu -20 292 197 2224 99 3 0 chr13 14225010 14225304 -87647865 - AluSg SINE Alu -15 295 1 1142 153 77 0 chr13 14225310 14225532 -87647637 - L1MB7 LINE L1 -1 6183 5945 264 283 163 0 chr13 14225656 14225748 -87647421 + MIR3 SINE MIR 75 181 -27 331 273 135 93 chr13 14226209 14226253 -87646916 - L1M2 LINE L1 -5578 1271 1230 193 29 59 0 chr13 14226253 14226287 -87646882 + (CAGCG)n Simple_repeat Simple_repeat 3 38 0 331 273 135 93 chr13 14226287 14226627 -87646542 - L1M2 LINE L1 -5619 1230 871 528 286 99 19 chr13 14227698 14227911 -87645258 - MIR SINE MIR -12 250 21 183 80 0 0 chr13 14228737 14228762 -87644407 + (TG)n Simple_repeat Simple_repeat 2 26 0 2733 254 35 14 chr13 14229350 14230064 -87643105 - HsTC2c DNA MER2_type 0 729 1 394 264 0 85 chr13 14230075 14230276 -87642893 + L2 LINE L2 3130 3313 0 2452 174 37 28 chr13 14231450 14231996 -87641173 - MER74A LTR ERVL 0 558 8 2493 66 0 3 chr13 14232327 14232630 -87640539 + AluY SINE Alu 1 302 -9 963 102 15 0 chr13 14232632 14232769 -87640400 + AluY SINE Alu 170 308 -3 297 0 0 0 chr13 14232769 14232802 -87640367 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 229 16 0 chr13 14234124 14234185 -87638984 + L2 LINE L2 3244 3305 -8 2163 113 0 10 chr13 14235545 14235847 -87637322 + AluSx SINE Alu 1 299 -13 580 274 50 11 chr13 14236042 14236221 -87636948 - MIR SINE MIR -71 191 6 219 218 51 13 chr13 14238509 14238587 -87634582 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr13 14239409 14239430 -87633739 + AT_rich Low_complexity Low_complexity 1 21 0 201 350 0 0 chr13 14239877 14239937 -87633232 + CT-rich Low_complexity Low_complexity 2 61 0 405 0 0 0 chr13 14242225 14242270 -87630899 + (TG)n Simple_repeat Simple_repeat 2 46 0 5167 48 0 3 chr13 14242990 14243611 -87629558 + L1PA6 LINE L1 5414 6032 -122 209 284 15 30 chr13 14243901 14243968 -87629201 + L2 LINE L2 3184 3249 -23 * 455 242 58 0 chr13 14243959 14244079 -87629090 + MIR SINE MIR 115 241 -21 2249 95 0 7 chr13 14244179 14244475 -87628694 - AluSg SINE Alu -1 309 16 333 0 0 0 chr13 14245097 14245134 -87628035 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr13 14245924 14245956 -87627213 + AT_rich Low_complexity Low_complexity 1 32 0 609 14 0 0 chr13 14246793 14246863 -87626306 + (GA)n Simple_repeat Simple_repeat 1 70 0 434 254 30 85 chr13 14247700 14247745 -87625424 - MER112 DNA MER1_type -32 228 182 1968 151 7 0 chr13 14247745 14248043 -87625126 - AluSx SINE Alu -12 300 1 434 254 30 85 chr13 14248043 14248233 -87624936 - MER112 DNA MER1_type -78 182 6 590 225 283 5 chr13 14248892 14249083 -87624086 + MIR SINE MIR 19 262 0 231 265 265 8 chr13 14249100 14249217 -87623952 - L2 LINE L2 -1 3271 3125 2424 145 54 2 chr13 14249900 14250306 -87622863 - MSTB1 LTR MaLR 0 432 6 183 167 0 0 chr13 14251619 14251661 -87621508 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr13 14253569 14253601 -87619568 + AT_rich Low_complexity Low_complexity 1 32 0 252 0 0 0 chr13 14254994 14255022 -87618147 + (TG)n Simple_repeat Simple_repeat 2 29 0 253 303 138 11 chr13 14255997 14256185 -87616984 - MIR SINE MIR -4 258 47 2279 114 3 0 chr13 14257028 14257325 -87615844 - AluSq SINE Alu -15 298 1 25 0 0 0 chr13 14257934 14257959 -87615210 + AT_rich Low_complexity Low_complexity 1 25 0 1029 201 66 3 chr13 14259075 14259256 -87613913 - MER33 DNA MER1_type -2272 313 106 1793 141 57 37 chr13 14259256 14259554 -87613615 + AluSg SINE Alu 1 304 -6 1029 201 66 3 chr13 14259554 14259660 -87613509 - MER33 DNA MER1_type -2479 106 8 464 246 291 0 chr13 14259675 14259919 -87613250 - MER102a DNA MER1_type -15 315 1 240 271 34 0 chr13 14260225 14260284 -87612885 + L2 LINE L2 3156 3216 -56 3877 141 22 6 chr13 14260325 14260997 -87612172 + L1MB3 LINE L1 5499 6181 -2 540 268 69 57 chr13 14261991 14262286 -87610883 + L1ME4a LINE L1 4957 5268 -910 2085 117 26 61 chr13 14262286 14262593 -87610576 + THE1B LTR MaLR 1 294 -70 2158 88 17 7 chr13 14262593 14262888 -87610281 + AluSg SINE Alu 3 300 -10 2085 117 26 61 chr13 14262888 14262957 -87610212 + THE1B LTR MaLR 294 364 0 540 268 69 57 chr13 14262957 14263121 -87610048 + L1ME4a LINE L1 5268 5429 -749 964 286 53 26 chr13 14263213 14263779 -87609390 + L1ME4a LINE L1 5540 6120 -1 189 278 42 0 chr13 14263827 14263899 -87609270 + L2 LINE L2 2357 2431 -883 252 0 0 0 chr13 14264218 14264246 -87608923 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 323 308 117 8 chr13 14264246 14264366 -87608803 - L2 LINE L2 -13 3259 3127 541 292 36 18 chr13 14264615 14264783 -87608386 - MIR SINE MIR -17 245 75 239 288 72 65 chr13 14264789 14264942 -87608227 + L2 LINE L2 3159 3312 -1 459 305 8 0 chr13 14265946 14266064 -87607105 - MIR SINE MIR -127 135 17 220 180 33 16 chr13 14266872 14266933 -87606236 + CT-rich Low_complexity Low_complexity 2 63 0 2074 143 0 0 chr13 14268587 14268873 -87604296 - AluSx SINE Alu -26 286 1 1800 125 40 68 chr13 14268901 14268972 -87604197 - MER2 DNA MER2_type 0 344 273 180 0 0 0 chr13 14268972 14268992 -87604177 + (TA)n Simple_repeat Simple_repeat 2 21 0 2164 89 0 4 chr13 14268992 14269263 -87603906 - AluY SINE Alu -41 270 1 1800 125 40 68 chr13 14269263 14269543 -87603626 - MER2 DNA MER2_type -69 275 2 267 203 36 65 chr13 14269690 14269743 -87603426 - MER112 DNA MER1_type -61 199 146 2133 118 0 14 chr13 14269743 14270039 -87603130 + AluSx SINE Alu 1 292 -20 267 203 36 65 chr13 14270039 14270123 -87603046 - MER112 DNA MER1_type -114 146 66 243 0 0 0 chr13 14270717 14270744 -87602425 + (T)n Simple_repeat Simple_repeat 1 27 0 256 294 118 0 chr13 14271501 14271603 -87601566 + MIR SINE MIR 30 143 -65 2408 82 0 0 chr13 14271788 14272093 -87601076 + AluY SINE Alu 1 305 -6 28 0 0 0 chr13 14272778 14272806 -87600363 + AT_rich Low_complexity Low_complexity 1 28 0 2257 103 10 0 chr13 14273343 14273634 -87599535 + AluSg SINE Alu 1 294 -16 219 269 60 0 chr13 14273933 14274000 -87599169 - L2 LINE L2 0 3313 3243 387 308 96 58 chr13 14275029 14275237 -87597932 + MIR SINE MIR 46 261 -1 1316 170 19 8 chr13 14276258 14276523 -87596646 - L1MA4 LINE L1 -4 6296 6029 1852 101 0 41 chr13 14276611 14276878 -87596291 - AluSx SINE Alu -56 256 1 1867 168 166 9 chr13 14277017 14277452 -87595717 - MLT1D LTR MaLR -2 503 1 695 304 32 12 chr13 14278520 14278778 -87594391 - MIR SINE MIR 0 262 2 568 233 134 12 chr13 14278844 14279016 -87594153 - MIR SINE MIR -51 211 19 205 303 90 66 chr13 14279087 14279209 -87593960 - L2 LINE L2 -38 3234 3110 2270 118 0 0 chr13 14279392 14279698 -87593471 - AluSx SINE Alu -6 306 1 1168 178 50 4 chr13 14280188 14280429 -87592740 - MLT1D LTR MaLR 0 505 254 247 297 14 0 chr13 14281968 14282042 -87591127 + MER117 DNA MER1_type 119 193 -4 370 286 137 44 chr13 14282094 14282321 -87590848 + MIR SINE MIR 3 250 -12 24 77 0 0 chr13 14283984 14284036 -87589133 + AT_rich Low_complexity Low_complexity 1 52 0 373 285 56 28 chr13 14284384 14284528 -87588641 - MIR3 SINE MIR -11 197 50 324 346 46 8 chr13 14284622 14284752 -87588417 + MIR SINE MIR 10 144 -118 875 151 50 0 chr13 14284946 14285113 -87588056 + FRAM SINE Alu 1 174 0 1738 298 89 66 chr13 14286284 14287339 -87585830 + L2 LINE L2 1925 3063 -250 259 71 24 0 chr13 14287339 14287381 -87585788 + MADE1 DNA Mariner 1 43 -37 1738 298 89 66 chr13 14287381 14287638 -87585531 + L2 LINE L2 3063 3313 0 1687 186 25 0 chr13 14290138 14290423 -87582746 + AluJo SINE Alu 2 293 -19 347 256 113 77 chr13 14291237 14291511 -87581658 - L1ME4a LINE L1 -24 6097 5814 381 288 8 32 chr13 14291515 14291640 -87581529 + MER5A DNA MER1_type 25 146 -43 234 191 0 0 chr13 14291977 14292024 -87581145 + CT-rich Low_complexity Low_complexity 3 49 0 629 323 87 39 chr13 14292711 14293343 -87579826 - L2 LINE L2 -30 3242 2589 213 259 0 19 chr13 14293474 14293528 -87579641 - L2 LINE L2 -92 3221 3169 866 115 54 11 chr13 14293549 14293816 -87579353 + L1MB3 LINE L1 5706 6183 0 559 297 136 25 chr13 14293929 14294436 -87578733 - L2 LINE L2 -160 3153 2593 226 315 14 0 chr13 14294574 14294647 -87578522 + tRNA-Glu-GAG tRNA tRNA 2 75 0 251 252 185 17 chr13 14294674 14294793 -87578376 + MIR SINE MIR 16 154 -108 767 267 142 44 chr13 14295114 14295678 -87577491 + L1M4 LINE L1 4371 4879 -1267 261 0 0 0 chr13 14295678 14295707 -87577462 + (TG)n Simple_repeat Simple_repeat 2 30 0 767 267 142 44 chr13 14295707 14295767 -87577402 + L1M4 LINE L1 4879 4932 -1214 4750 148 42 6 chr13 14295767 14296638 -87576531 - MER4D LTR ERV1 0 903 1 767 267 142 44 chr13 14296638 14296895 -87576274 + L1M4 LINE L1 4932 5339 -807 750 184 0 43 chr13 14297570 14297733 -87575436 - L2 LINE L2 0 3313 3158 269 244 278 0 chr13 14297744 14297834 -87575335 + MER5A DNA MER1_type 73 187 -2 317 317 48 21 chr13 14298519 14298664 -87574505 + L2 LINE L2 3155 3303 -10 25 0 0 0 chr13 14300421 14300446 -87572723 + AT_rich Low_complexity Low_complexity 1 25 0 289 274 186 0 chr13 14300767 14300869 -87572300 - L2 LINE L2 -5 3267 3147 1921 140 10 19 chr13 14300956 14301270 -87571899 - AluJb SINE Alu -1 311 1 306 279 134 96 chr13 14301294 14301378 -87571791 + L2 LINE L2 1993 2072 -1242 2307 99 6 6 chr13 14301378 14301690 -87571479 - AluSx SINE Alu 0 312 1 306 279 134 96 chr13 14301690 14302262 -87570907 + L2 LINE L2 2072 2674 -640 196 238 0 0 chr13 14302576 14302618 -87570551 - L2 LINE L2 -5 3308 3267 633 272 52 49 chr13 14302807 14303112 -87570057 + LTR16C LTR ERVL 186 491 0 374 256 45 75 chr13 14303340 14303473 -87569696 - L1M LINE L1 -700 5421 5293 425 316 67 27 chr13 14303531 14303756 -87569413 - L1M4 LINE L1 -859 5287 5054 205 200 0 22 chr13 14303924 14303969 -87569200 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 445 211 9 0 chr13 14303987 14304101 -87569068 - L1MC4 LINE L1 -7 8035 7921 955 186 63 94 chr13 14304182 14304597 -87568572 - L1MC4 LINE L1 -143 7899 7498 1162 131 20 50 chr13 14354949 14355148 -87518021 - AluJo SINE Alu -119 193 1 24 32 0 0 chr13 14355151 14355182 -87517987 + AT_rich Low_complexity Low_complexity 1 31 0 2324 77 14 0 chr13 14355225 14355512 -87517657 + AluSg SINE Alu 1 291 -19 799 154 15 15 chr13 14356530 14356660 -87516509 - FLAM_C SINE Alu -2 131 2 632 258 155 17 chr13 14356817 14357108 -87516061 + L1ME LINE L1 5399 5729 -392 193 133 0 0 chr13 14357930 14357960 -87515209 - L2 LINE L2 -7 3306 3277 5403 97 13 49 chr13 14358051 14358236 -87514933 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 2211 121 0 0 chr13 14358236 14358533 -87514636 - AluSx SINE Alu -15 297 1 5403 97 13 49 chr13 14358533 14358846 -87514323 - Tigger4(Zombi) DNA MER2_type -190 2541 2218 2141 131 3 13 chr13 14358846 14359158 -87514011 + AluSx SINE Alu 1 309 -3 5403 97 13 49 chr13 14359158 14359328 -87513841 - Tigger4(Zombi) DNA MER2_type -513 2218 2097 2263 97 0 3 chr13 14359328 14359626 -87513543 - AluSc SINE Alu -12 297 1 5403 97 13 49 chr13 14359626 14359810 -87513359 - Tigger4(Zombi) DNA MER2_type -634 2097 1908 9521 106 37 82 chr13 14359830 14360520 -87512649 - Tigger4(Zombi) DNA MER2_type -1140 1591 872 865 79 0 9 chr13 14360520 14360634 -87512535 + AluSg/x SINE Alu 188 300 -10 9521 106 37 82 chr13 14360634 14361159 -87512010 - Tigger4(Zombi) DNA MER2_type -1859 872 349 186 103 0 0 chr13 14361159 14361188 -87511981 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9521 106 37 82 chr13 14361188 14361523 -87511646 - Tigger4(Zombi) DNA MER2_type -2382 349 1 233 363 20 20 chr13 14361896 14361998 -87511171 + MIR SINE MIR 22 123 -85 201 323 77 0 chr13 14362376 14362441 -87510728 + L2 LINE L2 3138 3207 -65 683 135 0 0 chr13 14362597 14362693 -87510476 - AluJb SINE Alu -20 292 197 2198 102 3 0 chr13 14362707 14363001 -87510168 - AluSg SINE Alu -15 295 1 1142 153 77 0 chr13 14363007 14363229 -87509940 - L1MB7 LINE L1 -1 6183 5945 264 283 163 0 chr13 14363353 14363445 -87509724 + MIR3 SINE MIR 75 181 -27 321 294 91 95 chr13 14363764 14363950 -87509219 - L1M2 LINE L1 -5509 1340 1155 193 29 59 0 chr13 14363950 14363984 -87509185 + (CAGCG)n Simple_repeat Simple_repeat 3 38 0 321 294 91 95 chr13 14363984 14364335 -87508834 - L1M2 LINE L1 -5694 1155 805 528 286 99 19 chr13 14365395 14365608 -87507561 - MIR SINE MIR -12 250 21 183 80 0 0 chr13 14366430 14366455 -87506714 + (TG)n Simple_repeat Simple_repeat 2 26 0 2714 255 35 14 chr13 14367043 14367757 -87505412 - HsTC2c DNA MER2_type 0 729 1 394 264 0 85 chr13 14367768 14367969 -87505200 + L2 LINE L2 3130 3313 0 2434 178 37 28 chr13 14369143 14369689 -87503480 - MER74A LTR ERVL 0 558 8 2502 66 0 3 chr13 14370020 14370324 -87502845 + AluY SINE Alu 1 303 -8 936 100 15 0 chr13 14370326 14370456 -87502713 + AluY SINE Alu 170 301 -10 261 0 0 0 chr13 14370456 14370485 -87502684 + (CA)n Simple_repeat Simple_repeat 2 30 0 261 229 16 0 chr13 14371806 14371867 -87501302 + L2 LINE L2 3244 3305 -8 2212 109 0 10 chr13 14373227 14373530 -87499639 + AluSx SINE Alu 1 300 -12 580 274 50 11 chr13 14373725 14373904 -87499265 - MIR SINE MIR -71 191 6 219 218 51 13 chr13 14376196 14376274 -87496895 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr13 14377096 14377117 -87496052 + AT_rich Low_complexity Low_complexity 1 21 0 201 350 0 0 chr13 14377552 14377612 -87495557 + CT-rich Low_complexity Low_complexity 2 61 0 405 0 0 0 chr13 14379902 14379947 -87493222 + (TG)n Simple_repeat Simple_repeat 2 46 0 5162 48 0 3 chr13 14380667 14381288 -87491881 + L1PA6 LINE L1 5414 6032 -122 209 284 15 30 chr13 14381578 14381645 -87491524 + L2 LINE L2 3184 3249 -23 * 455 242 58 0 chr13 14381636 14381756 -87491413 + MIR SINE MIR 115 241 -21 2249 95 0 7 chr13 14381856 14382152 -87491017 - AluSg SINE Alu -1 309 16 315 0 0 0 chr13 14382777 14382812 -87490357 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 31 0 0 chr13 14383603 14383635 -87489534 + AT_rich Low_complexity Low_complexity 1 32 0 360 0 0 0 chr13 14384472 14384512 -87488657 + (GA)n Simple_repeat Simple_repeat 1 40 0 434 254 30 85 chr13 14385349 14385394 -87487775 - MER112 DNA MER1_type -32 228 182 1946 154 7 0 chr13 14385394 14385692 -87487477 - AluSx SINE Alu -12 300 1 434 254 30 85 chr13 14385692 14385882 -87487287 - MER112 DNA MER1_type -78 182 6 582 225 305 0 chr13 14386541 14386728 -87486441 + MIR SINE MIR 19 262 0 231 265 265 8 chr13 14386745 14386862 -87486307 - L2 LINE L2 -1 3271 3125 2377 150 54 2 chr13 14387545 14387951 -87485218 - MSTB1 LTR MaLR 0 432 6 183 167 0 0 chr13 14389264 14389306 -87483863 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr13 14391215 14391247 -87481922 + AT_rich Low_complexity Low_complexity 1 32 0 324 0 0 0 chr13 14392640 14392676 -87480493 + (TG)n Simple_repeat Simple_repeat 2 37 0 238 303 138 11 chr13 14393651 14393839 -87479330 - MIR SINE MIR -4 258 47 2282 111 3 0 chr13 14394682 14394979 -87478190 - AluSq SINE Alu -15 298 1 25 0 0 0 chr13 14395589 14395614 -87477555 + AT_rich Low_complexity Low_complexity 1 25 0 1188 195 70 3 chr13 14396730 14396910 -87476259 - MER33 DNA MER1_type -2272 313 106 1786 141 57 34 chr13 14396910 14397208 -87475961 + AluSg SINE Alu 1 305 -5 1188 195 70 3 chr13 14397208 14397314 -87475855 - MER33 DNA MER1_type -2479 106 8 566 246 291 0 chr13 14397329 14397573 -87475596 - MER102a DNA MER1_type -15 315 1 240 271 34 0 chr13 14397879 14397938 -87475231 + L2 LINE L2 3156 3216 -56 4222 141 22 6 chr13 14397979 14398651 -87474518 + L1MB3 LINE L1 5499 6181 -2 236 293 9 9 chr13 14399645 14399751 -87473418 + L1ME4a LINE L1 4957 5062 -1084 2293 111 26 61 chr13 14399940 14400247 -87472922 + THE1B LTR MaLR 1 294 -70 2195 87 17 7 chr13 14400247 14400545 -87472624 + AluSg SINE Alu 3 303 -7 2293 111 26 61 chr13 14400545 14400614 -87472555 + THE1B LTR MaLR 294 364 0 1147 286 89 49 chr13 14400614 14401436 -87471733 + L1ME4a LINE L1 5266 6120 -1 183 278 42 0 chr13 14401484 14401556 -87471613 + L2 LINE L2 2357 2431 -883 252 0 0 0 chr13 14401875 14401903 -87471266 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 317 308 117 8 chr13 14401903 14402023 -87471146 - L2 LINE L2 -13 3259 3127 534 292 36 18 chr13 14402272 14402440 -87470729 - MIR SINE MIR -17 245 75 239 288 72 65 chr13 14402446 14402599 -87470570 + L2 LINE L2 3159 3312 -1 459 305 8 0 chr13 14403603 14403721 -87469448 - MIR SINE MIR -127 135 17 220 180 33 16 chr13 14404529 14404590 -87468579 + CT-rich Low_complexity Low_complexity 2 63 0 2074 143 0 0 chr13 14406245 14406531 -87466638 - AluSx SINE Alu -26 286 1 1875 122 31 60 chr13 14406559 14406625 -87466544 - MER2 DNA MER2_type 0 344 278 774 105 0 0 chr13 14406625 14406739 -87466430 + (TA)n Simple_repeat Simple_repeat 2 115 0 2442 83 0 3 chr13 14406739 14407039 -87466130 - AluY SINE Alu -12 299 1 1875 122 31 60 chr13 14407039 14407324 -87465845 - MER2 DNA MER2_type -64 280 2 267 203 36 65 chr13 14407471 14407524 -87465645 - MER112 DNA MER1_type -61 199 146 2133 118 0 14 chr13 14407524 14407820 -87465349 + AluSx SINE Alu 1 292 -20 267 203 36 65 chr13 14407820 14407904 -87465265 - MER112 DNA MER1_type -114 146 66 216 0 0 0 chr13 14408502 14408526 -87464643 + (T)n Simple_repeat Simple_repeat 1 24 0 256 294 118 0 chr13 14409283 14409385 -87463784 + MIR SINE MIR 30 143 -65 2408 82 0 0 chr13 14409570 14409875 -87463294 + AluY SINE Alu 1 305 -6 28 0 0 0 chr13 14410560 14410588 -87462581 + AT_rich Low_complexity Low_complexity 1 28 0 2257 103 10 0 chr13 14411125 14411416 -87461753 + AluSg SINE Alu 1 294 -16 238 265 44 0 chr13 14411715 14411783 -87461386 - L2 LINE L2 0 3313 3243 387 308 96 58 chr13 14412806 14413014 -87460155 + MIR SINE MIR 46 261 -1 1318 170 19 8 chr13 14414035 14414300 -87458869 - L1MA4 LINE L1 -4 6296 6029 1852 101 0 41 chr13 14414387 14414654 -87458515 - AluSx SINE Alu -56 256 1 1867 168 166 9 chr13 14414793 14415228 -87457941 - MLT1D LTR MaLR -2 503 1 695 304 32 12 chr13 14416296 14416554 -87456615 - MIR SINE MIR 0 262 2 568 233 134 12 chr13 14416620 14416792 -87456377 - MIR SINE MIR -51 211 19 205 303 90 66 chr13 14416863 14416985 -87456184 - L2 LINE L2 -38 3234 3110 2302 114 0 0 chr13 14417168 14417476 -87455693 - AluSx SINE Alu -4 308 1 1149 183 50 4 chr13 14417966 14418207 -87454962 - MLT1D LTR MaLR 0 505 254 251 308 13 0 chr13 14419746 14419824 -87453345 + MER117 DNA MER1_type 119 197 0 370 286 137 44 chr13 14419872 14420099 -87453070 + MIR SINE MIR 3 250 -12 24 77 0 0 chr13 14421762 14421814 -87451355 + AT_rich Low_complexity Low_complexity 1 52 0 352 292 56 28 chr13 14422162 14422306 -87450863 - MIR3 SINE MIR -11 197 50 324 346 46 8 chr13 14422400 14422530 -87450639 + MIR SINE MIR 10 144 -118 875 151 50 0 chr13 14422724 14422891 -87450278 + FRAM SINE Alu 1 174 0 1729 298 89 66 chr13 14424064 14425119 -87448050 + L2 LINE L2 1925 3063 -250 259 71 24 0 chr13 14425119 14425161 -87448008 + MADE1 DNA Mariner 1 43 -37 1729 298 89 66 chr13 14425161 14425418 -87447751 + L2 LINE L2 3063 3313 0 1687 186 25 0 chr13 14427920 14428205 -87444964 + AluJo SINE Alu 2 293 -19 347 256 113 77 chr13 14429019 14429293 -87443876 - L1ME4a LINE L1 -24 6097 5814 381 288 8 32 chr13 14429297 14429422 -87443747 + MER5A DNA MER1_type 25 146 -43 234 191 0 0 chr13 14429762 14429809 -87443360 + CT-rich Low_complexity Low_complexity 3 49 0 633 330 84 34 chr13 14430496 14431127 -87442042 - L2 LINE L2 -30 3242 2589 213 259 0 19 chr13 14431258 14431312 -87441857 - L2 LINE L2 -92 3221 3169 866 112 58 11 chr13 14431333 14431600 -87441569 + L1MB3 LINE L1 5706 6183 0 559 297 136 25 chr13 14431713 14432220 -87440949 - L2 LINE L2 -160 3153 2593 226 315 14 0 chr13 14432358 14432431 -87440738 + tRNA-Glu-GAG tRNA tRNA 2 75 0 248 252 185 17 chr13 14432458 14432577 -87440592 + MIR SINE MIR 16 154 -108 773 267 142 44 chr13 14432898 14433462 -87439707 + L1M4 LINE L1 4371 4879 -1267 225 0 0 0 chr13 14433462 14433487 -87439682 + (TG)n Simple_repeat Simple_repeat 2 26 0 773 267 142 44 chr13 14433487 14433547 -87439622 + L1M4 LINE L1 4879 4932 -1214 4727 150 41 6 chr13 14433547 14434419 -87438750 - MER4D LTR ERV1 0 903 1 773 267 142 44 chr13 14434419 14434676 -87438493 + L1M4 LINE L1 4932 5339 -807 750 184 0 43 chr13 14435351 14435514 -87437655 - L2 LINE L2 0 3313 3158 269 244 278 0 chr13 14435525 14435615 -87437554 + MER5A DNA MER1_type 73 187 -2 317 317 48 21 chr13 14436300 14436445 -87436724 + L2 LINE L2 3155 3303 -10 25 0 0 0 chr13 14438203 14438228 -87434941 + AT_rich Low_complexity Low_complexity 1 25 0 289 274 186 0 chr13 14438549 14438651 -87434518 - L2 LINE L2 -5 3267 3147 1921 140 10 19 chr13 14438738 14439052 -87434117 - AluJb SINE Alu -1 311 1 324 287 126 90 chr13 14439076 14439161 -87434008 + L2 LINE L2 1993 2073 -1241 2307 99 6 6 chr13 14439161 14439473 -87433696 - AluSx SINE Alu 0 312 1 324 287 126 90 chr13 14439473 14440045 -87433124 + L2 LINE L2 2073 2674 -640 196 238 0 0 chr13 14440359 14440401 -87432768 - L2 LINE L2 -5 3308 3267 633 272 52 49 chr13 14440590 14440895 -87432274 + LTR16C LTR ERVL 186 491 0 376 256 45 75 chr13 14441123 14441256 -87431913 - L1M LINE L1 -700 5421 5293 421 273 43 102 chr13 14441322 14441626 -87431543 - L1 LINE L1 -871 5275 4990 205 200 0 22 chr13 14441707 14441752 -87431417 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 1715 194 43 130 chr13 14441770 14442539 -87430630 - L1MC4 LINE L1 -7 8035 7334 323 294 123 48 chr13 14442639 14442932 -87430237 - L1 LINE L1 -1635 4511 4197 333 273 11 57 chr13 14442968 14443144 -87430025 - L1 LINE L1 -2391 3755 3588 300 151 0 19 chr13 14443349 14443402 -87429767 + L1MC4 LINE L1 6652 6703 -1339 2242 82 7 7 chr13 14443521 14443815 -87429354 - AluSx SINE Alu -18 294 1 303 356 88 25 chr13 14444051 14444211 -87428958 - MIR3 SINE MIR -4 204 35 233 328 0 0 chr13 14444976 14445037 -87428132 + (CA)n Simple_repeat Simple_repeat 2 62 0 638 287 0 92 chr13 14445289 14445412 -87427757 - MIR SINE MIR -6 256 168 2514 64 0 6 chr13 14445412 14445725 -87427444 - AluY SINE Alu 0 311 1 638 287 0 92 chr13 14445725 14445862 -87427307 - MIR SINE MIR -94 168 20 242 200 0 0 chr13 14447824 14447864 -87425305 - MIR SINE MIR -5 257 218 383 326 154 40 chr13 14448307 14448788 -87424381 - L2 LINE L2 -556 2758 2223 240 111 0 0 chr13 14448902 14448938 -87424231 + (TG)n Simple_repeat Simple_repeat 2 37 0 1701 145 24 28 chr13 14449419 14449709 -87423460 - AluJo SINE Alu -22 290 2 206 61 0 30 chr13 14449760 14449793 -87423376 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 221 21 48 chr13 14450892 14451037 -87422132 + MER103 DNA DNA 1 141 -25 2079 111 11 0 chr13 14451111 14451390 -87421779 + AluSx SINE Alu 1 282 -30 528 258 40 69 chr13 14451508 14451783 -87421386 + Charlie8 DNA MER1_type 38 1402 -1015 345 281 29 7 chr13 14451889 14452028 -87421141 + L1ME4a LINE L1 5974 6115 -6 30 27 0 0 chr13 14452341 14452378 -87420791 + AT_rich Low_complexity Low_complexity 1 37 0 327 256 135 8 chr13 14452943 14453076 -87420093 + MIR SINE MIR 98 247 -15 204 373 112 26 chr13 14453684 14453917 -87419252 - L3b LINE CR1 -24 1559 1307 21 0 0 0 chr13 14454156 14454177 -87418992 + AT_rich Low_complexity Low_complexity 1 21 0 1848 154 0 13 chr13 14454182 14454481 -87418688 + AluJo SINE Alu 1 295 -17 282 136 76 0 chr13 14454553 14454619 -87418550 - L1MA10 LINE L1 -7 6327 6257 4308 211 95 18 chr13 14454701 14455864 -87417305 - L1ME1 LINE L1 -162 6004 4633 2090 117 20 3 chr13 14455864 14456163 -87417006 - AluSx SINE Alu -4 308 5 4308 211 95 18 chr13 14456163 14456905 -87416264 - L1ME1 LINE L1 -1533 4633 3950 307 361 191 24 chr13 14456957 14457375 -87415794 - L2 LINE L2 -630 2684 2197 227 231 0 0 chr13 14458470 14458509 -87414660 + L2 LINE L2 3216 3254 -18 291 345 60 0 chr13 14458549 14458717 -87414452 - L2 LINE L2 -1220 2094 1917 698 164 78 0 chr13 14459175 14459291 -87413878 + AluJb SINE Alu 1 125 -187 1962 135 0 7 chr13 14459532 14459821 -87413348 + AluJb SINE Alu 1 287 -25 22 0 0 0 chr13 14459870 14459892 -87413277 + AT_rich Low_complexity Low_complexity 1 22 0 346 278 0 0 chr13 14460865 14460962 -87412207 + MIR SINE MIR 166 262 0 207 244 0 0 chr13 14463009 14463054 -87410115 + (CGG)n Simple_repeat Simple_repeat 2 46 0 206 341 52 44 chr13 14464978 14465113 -87408056 + MIR3 SINE MIR 2 137 -71 245 359 70 23 chr13 14465475 14465603 -87407566 - MIR3 SINE MIR -71 137 4 656 329 51 57 chr13 14465849 14466447 -87406722 + L2 LINE L2 2636 3264 -8 296 269 103 0 chr13 14467007 14467085 -87406084 - L2 LINE L2 -2 3311 3226 181 310 17 0 chr13 14467116 14467174 -87405995 + L2 LINE L2 3214 3272 0 29 0 0 0 chr13 14467898 14467927 -87405242 + AT_rich Low_complexity Low_complexity 1 29 0 207 320 39 39 chr13 14468359 14468437 -87404732 + L2 LINE L2 3163 3240 -32 312 299 31 10 chr13 14468674 14468771 -87404398 + MIR SINE MIR 49 147 -115 39 38 0 0 chr13 14469512 14469565 -87403604 + AT_rich Low_complexity Low_complexity 1 53 0 180 0 0 0 chr13 14470555 14470575 -87402594 + (A)n Simple_repeat Simple_repeat 1 20 0 2292 90 10 0 chr13 14471341 14471641 -87401528 + AluSp SINE Alu 1 303 -10 1268 113 0 0 chr13 14471641 14471809 -87401360 + AluSg/x SINE Alu 138 305 -7 228 231 91 118 chr13 14472704 14472890 -87400279 - MER5A DNA MER1_type -2 187 7 2152 152 0 25 chr13 14473262 14473432 -87399737 - L1MA5 LINE L1 0 6300 6127 2393 102 0 0 chr13 14473432 14473737 -87399432 - AluSq SINE Alu -8 305 1 2152 152 0 25 chr13 14473737 14473968 -87399201 - L1MA5 LINE L1 -173 6127 5909 418 209 38 25 chr13 14474723 14474881 -87398288 + GA-rich Low_complexity Low_complexity 3 162 0 2042 132 0 3 chr13 14475156 14475470 -87397699 + AluSx SINE Alu 5 317 0 308 250 42 10 chr13 14476695 14476791 -87396378 - MIR3 SINE MIR 0 208 110 214 315 82 0 chr13 14477377 14477450 -87395719 - MIR SINE MIR -98 164 86 235 229 242 57 chr13 14478789 14478946 -87394223 - MER5A DNA MER1_type -3 186 1 27 0 0 0 chr13 14479359 14479386 -87393783 + AT_rich Low_complexity Low_complexity 1 27 0 210 329 16 121 chr13 14480292 14480541 -87392628 + L2 LINE L2 2963 3185 -87 230 81 27 0 chr13 14480543 14480580 -87392589 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 21 0 0 0 chr13 14480675 14480696 -87392473 + AT_rich Low_complexity Low_complexity 1 21 0 194 211 276 26 chr13 14481787 14481863 -87391306 + MIR SINE MIR 46 140 -68 1493 123 0 0 chr13 14482376 14482611 -87390558 - L1MA2 LINE L1 0 6304 6070 1759 199 3 0 chr13 14483302 14483604 -87389565 - AluJo SINE Alu -9 303 1 292 250 16 0 chr13 14483842 14483906 -87389263 - L2 LINE L2 0 3313 3249 1149 213 50 20 chr13 14483913 14484517 -87388652 - L1M4 LINE L1 -3594 2788 2171 * 1725 214 52 48 chr13 14484512 14484749 -87388420 - L1M4 LINE L1 -4568 1735 1501 2351 103 0 16 chr13 14484749 14485060 -87388109 - AluSg SINE Alu -4 306 1 1725 214 52 48 chr13 14485060 14485470 -87387699 - L1M4 LINE L1 -4802 1501 777 294 333 8 8 chr13 14485953 14486085 -87387084 - L1M4 LINE L1 -6009 304 173 393 262 284 0 chr13 14486412 14486553 -87386616 + MIR SINE MIR 76 256 -6 471 314 52 87 chr13 14488142 14488511 -87384658 + L2 LINE L2 2917 3272 0 457 360 0 0 chr13 14488573 14488737 -87384432 - MIR SINE MIR 0 262 99 21 0 0 0 chr13 14489007 14489028 -87384141 + AT_rich Low_complexity Low_complexity 1 21 0 469 202 0 83 chr13 14489754 14489863 -87383306 + L2 LINE L2 3168 3267 -5 438 271 101 8 chr13 14489869 14489998 -87383171 + MIR SINE MIR 8 148 -114 2237 98 3 3 chr13 14490957 14491252 -87381917 + AluSc SINE Alu 1 295 -14 24 32 0 0 chr13 14491403 14491434 -87381735 + AT_rich Low_complexity Low_complexity 1 31 0 7492 117 58 26 chr13 14491635 14492294 -87380875 + HSMAR2 DNA Mariner 1 638 -664 2341 112 0 0 chr13 14492294 14492606 -87380563 + AluSx SINE Alu 1 312 0 7492 117 58 26 chr13 14492606 14493207 -87379962 + HSMAR2 DNA Mariner 638 1301 -1 28 0 0 0 chr13 14493220 14493248 -87379921 + AT_rich Low_complexity Low_complexity 1 28 0 2338 99 0 6 chr13 14493248 14493262 -87379907 - AluY SINE Alu -1 310 297 590 0 14 0 chr13 14493262 14493332 -87379837 + (TA)n Simple_repeat Simple_repeat 1 71 0 2338 99 0 6 chr13 14493332 14493629 -87379540 - AluY SINE Alu -14 297 1 484 302 47 50 chr13 14493660 14493961 -87379208 - L1MEd LINE L1 -5818 301 2 360 150 0 170 chr13 14494031 14494178 -87378991 - L1MA8 LINE L1 -4 6287 6166 2138 120 0 10 chr13 14494435 14494758 -87378411 + AluSx SINE Alu 1 312 0 355 319 24 30 chr13 14495832 14496001 -87377168 + MIR3 SINE MIR 20 187 -21 232 217 75 142 chr13 14496359 14496465 -87376704 - L2 LINE L2 0 3272 3174 507 335 170 26 chr13 14497479 14497903 -87375266 - L3 LINE CR1 -93 1484 1000 341 266 129 36 chr13 14498010 14498149 -87375020 - L2 LINE L2 -5 3267 3116 348 372 213 12 chr13 14498315 14498737 -87374432 - L3 LINE CR1 -1046 531 25 414 317 104 0 chr13 14498987 14499189 -87373980 + L2 LINE L2 2562 2784 -530 360 242 106 148 chr13 14499314 14499551 -87373618 + L2 LINE L2 2939 3160 -112 1149 167 174 4 chr13 14499551 14499827 -87373342 - MER33 DNA MER1_type -1 323 1 360 242 106 148 chr13 14499827 14499920 -87373249 + L2 LINE L2 3160 3255 -17 304 143 45 62 chr13 14500304 14500356 -87372813 + (TA)n Simple_repeat Simple_repeat 1 52 -58 2477 90 11 8 chr13 14500356 14500710 -87372459 + THE1A LTR MaLR 1 355 0 11754 92 9 4 chr13 14500710 14501206 -87371963 + THE1A-int LTR MaLR 1 493 -1087 2070 112 7 3 chr13 14501206 14501509 -87371660 + AluSq SINE Alu 1 304 -9 11754 92 9 4 chr13 14501509 14502584 -87370585 + THE1A-int LTR MaLR 493 1580 0 2501 88 8 8 chr13 14502584 14502937 -87370232 + THE1A LTR MaLR 1 353 -2 304 143 45 62 chr13 14502937 14502994 -87370175 + (TA)n Simple_repeat Simple_repeat 49 110 0 186 43 0 0 chr13 14504969 14504992 -87368177 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2170 127 3 0 chr13 14505414 14505722 -87367447 - AluSq SINE Alu -4 309 1 4300 118 57 17 chr13 14505727 14506432 -87366737 - L1MA4 LINE L1 -5 6295 5563 233 247 123 41 chr13 14506623 14506696 -87366473 - L2 LINE L2 0 3272 3194 2180 125 3 3 chr13 14506808 14507113 -87366056 - AluSg SINE Alu -5 305 1 2229 168 22 3 chr13 14507149 14507507 -87365662 + MLT1A1 LTR MaLR 1 365 0 2338 88 0 7 chr13 14507534 14507839 -87365330 + AluY SINE Alu 5 307 -4 409 293 58 29 chr13 14508968 14509142 -87364027 - MIR SINE MIR -56 206 28 227 361 13 48 chr13 14509214 14509379 -87363790 + MIR SINE MIR 38 195 -67 3268 147 105 24 chr13 14509458 14509490 -87363679 - L1MB2 LINE L1 -1 6170 6142 1581 186 0 4 chr13 14509490 14509754 -87363415 - AluJb SINE Alu -49 263 1 3268 147 105 24 chr13 14509754 14509765 -87363404 - L1MB2 LINE L1 -29 6142 6133 2091 135 7 0 chr13 14509765 14510061 -87363108 - AluSx SINE Alu -14 298 1 3268 147 105 24 chr13 14510061 14510655 -87362514 - L1MB2 LINE L1 -38 6133 5473 189 0 0 0 chr13 14510655 14510676 -87362493 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3268 147 105 24 chr13 14510676 14510703 -87362466 - L1MB2 LINE L1 -698 5473 5450 180 0 0 0 chr13 14510800 14510820 -87362349 + (TG)n Simple_repeat Simple_repeat 2 21 0 1994 133 0 3 chr13 14510820 14511106 -87362063 - AluSx SINE Alu -27 285 1 648 154 4 0 chr13 14511346 14511466 -87361703 - LTR12 LTR ERV1 0 714 49 332 224 0 0 chr13 14511466 14511542 -87361627 - LTR30 LTR ERV1 -98 624 549 908 61 9 0 chr13 14511544 14511658 -87361511 - LTR12 LTR ERV1 -440 274 160 * 1292 109 18 138 chr13 14511628 14511949 -87361220 - LTR12 LTR ERV1 -475 239 1 1665 274 62 80 chr13 14511995 14512249 -87360920 - L1MEd LINE L1 -5011 1108 851 2296 104 0 10 chr13 14512249 14512558 -87360611 - AluSx SINE Alu -6 306 1 1665 274 62 80 chr13 14512558 14513430 -87359739 - L1MEd LINE L1 -5268 851 2 2383 97 0 0 chr13 14514215 14514523 -87358646 + AluSg SINE Alu 1 308 -2 837 245 92 39 chr13 14514786 14515092 -87358077 - MLT1H LTR MaLR -227 322 1 191 103 26 0 chr13 14515176 14515215 -87357954 + (TA)n Simple_repeat Simple_repeat 1 40 0 198 191 0 0 chr13 14515514 14515556 -87357613 + (TG)n Simple_repeat Simple_repeat 2 43 0 2024 206 130 35 chr13 14515586 14515868 -87357301 - MLT1E2 LTR MaLR -4 622 368 1661 191 40 40 chr13 14515868 14516240 -87356929 - MLT1A2 LTR MaLR 0 374 3 2024 206 130 35 chr13 14516240 14516525 -87356644 - MLT1E2 LTR MaLR -258 368 1 264 59 0 0 chr13 14516546 14516580 -87356589 + (TCTCCC)n Simple_repeat Simple_repeat 1 34 0 7058 59 34 22 chr13 14516581 14518268 -87354901 + SVA Other Other 1 1385 -1 2408 96 0 0 chr13 14519312 14519613 -87353556 - AluSx SINE Alu -11 301 1 27 73 0 0 chr13 14519719 14519774 -87353395 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr13 14520357 14520386 -87352783 + AT_rich Low_complexity Low_complexity 1 29 0 1623 58 10 0 chr13 14520533 14520741 -87352428 + L1P4 LINE L1 5569 5778 -383 2870 94 5 13 chr13 14520775 14521169 -87352000 + L1PA14 LINE L1 5769 6159 -2 275 252 54 27 chr13 14521169 14521274 -87351895 - MIR SINE MIR -134 128 21 1934 270 35 45 chr13 14523389 14524137 -87349032 - MER20B DNA MER1_type -6 777 38 360 267 154 31 chr13 14525460 14525655 -87347514 + MIR SINE MIR 36 254 -8 435 229 181 21 chr13 14525773 14525917 -87347252 + MIR SINE MIR 82 248 -14 346 338 49 29 chr13 14525954 14526158 -87347011 - MIR SINE MIR -48 214 7 1872 154 0 20 chr13 14526228 14526553 -87346616 + AluJo SINE Alu 1 312 0 22 0 0 0 chr13 14527737 14527759 -87345410 + AT_rich Low_complexity Low_complexity 1 22 0 432 325 53 20 chr13 14528030 14528181 -87344988 - L3 LINE CR1 -3 1574 1419 201 208 19 19 chr13 14528306 14528359 -87344810 - L3 LINE CR1 -160 1417 1365 1284 144 47 0 chr13 14528465 14528680 -87344489 - MLT1B LTR MaLR 0 390 166 892 128 0 0 chr13 14528680 14528829 -87344340 - AluSx SINE Alu 0 305 157 847 90 0 9 chr13 14528836 14528947 -87344222 - AluSx SINE Alu -203 110 1 1070 127 24 0 chr13 14528952 14529118 -87344051 - MLT1B LTR MaLR -220 170 1 202 326 78 39 chr13 14529210 14529339 -87343830 - L3 LINE CR1 -602 975 842 448 214 29 43 chr13 14529342 14529482 -87343687 - L2 LINE L2 -54 3259 3122 260 318 40 66 chr13 14529558 14529756 -87343413 - L3 LINE CR1 -757 820 628 315 0 0 0 chr13 14530693 14530728 -87342441 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1201 278 86 12 chr13 14530729 14531136 -87342033 - L2 LINE L2 -16 3297 2861 432 0 0 0 chr13 14531302 14531350 -87341819 + (TG)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr13 14532681 14532703 -87340466 + AT_rich Low_complexity Low_complexity 1 22 0 567 324 143 25 chr13 14532773 14533165 -87340004 - L2 LINE L2 -1 3271 2834 876 356 82 19 chr13 14533246 14534027 -87339142 - L2 LINE L2 -675 2639 1810 337 336 72 67 chr13 14534172 14534517 -87338652 - L2 LINE L2 -16 3256 2910 * 489 308 83 72 chr13 14534490 14534870 -87338299 - L2 LINE L2 -1175 2139 1750 2686 121 62 5 chr13 14534870 14535275 -87337894 - MSTA LTR MaLR 0 428 1 489 308 83 72 chr13 14535275 14535410 -87337759 - L2 LINE L2 -1564 1750 1618 381 70 0 0 chr13 14536111 14536164 -87337005 + (TG)n Simple_repeat Simple_repeat 1 110 0 381 70 0 0 chr13 14536164 14536221 -87336948 + (TG)n Simple_repeat Simple_repeat 2 58 0 240 329 133 7 chr13 14536569 14536712 -87336457 - MIR SINE MIR -6 256 96 3149 210 29 3 chr13 14537031 14537663 -87335506 - L1MB5 LINE L1 -8 6166 5519 598 250 43 67 chr13 14537665 14537873 -87335296 + MER112 DNA MER1_type 17 219 -41 1309 202 24 27 chr13 14537880 14538217 -87334952 + Charlie4a DNA MER1_type 168 503 -5 1327 168 58 70 chr13 14538225 14538553 -87334616 + MER33 DNA MER1_type 1 324 0 27 0 0 0 chr13 14538922 14538949 -87334220 + AT_rich Low_complexity Low_complexity 1 27 0 2359 94 0 0 chr13 14541174 14541472 -87331697 - AluSx SINE Alu -14 298 1 202 121 30 0 chr13 14542115 14542148 -87331021 + CT-rich Low_complexity Low_complexity 2 35 0 296 265 128 17 chr13 14542248 14542365 -87330804 - MIR SINE MIR -69 193 64 2179 113 36 0 chr13 14542415 14542716 -87330453 - AluSq SINE Alu -1 312 1 186 125 31 0 chr13 14543124 14543156 -87330013 + L2 LINE L2 2726 2758 -556 186 204 0 82 chr13 14544291 14544340 -87328829 - L2 LINE L2 0 3313 3269 391 228 0 219 chr13 14544575 14544803 -87328366 - MER91A DNA MER1_type 0 196 19 2308 116 0 0 chr13 14544987 14545298 -87327871 - AluSx SINE Alu -1 311 1 24 0 0 0 chr13 14545353 14545377 -87327792 + AT_rich Low_complexity Low_complexity 1 24 0 525 225 23 16 chr13 14545421 14545550 -87327619 + MIR SINE MIR 74 203 -59 21 0 0 0 chr13 14546315 14546336 -87326833 + AT_rich Low_complexity Low_complexity 1 21 0 2119 116 38 0 chr13 14546564 14546857 -87326312 + AluSx SINE Alu 1 304 -8 636 298 42 17 chr13 14546863 14547101 -87326068 - MIR SINE MIR -5 257 14 472 77 26 13 chr13 14549101 14549179 -87323990 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 21 0 0 0 chr13 14549932 14549953 -87323216 + AT_rich Low_complexity Low_complexity 1 21 0 424 119 179 0 chr13 14550770 14550854 -87322315 - L2 LINE L2 -4 3268 3170 557 233 164 16 chr13 14552049 14552238 -87320931 + MIR SINE MIR 36 252 -10 435 276 73 0 chr13 14553693 14553816 -87319353 + MER94 DNA DNA 2 133 -1 200 163 0 20 chr13 14554102 14554151 -87319018 + CT-rich Low_complexity Low_complexity 2 49 0 363 23 0 0 chr13 14554156 14554200 -87318969 + (CA)n Simple_repeat Simple_repeat 2 45 0 255 114 0 0 chr13 14556572 14556616 -87316553 + (TC)n Simple_repeat Simple_repeat 1 44 0 1906 96 4 0 chr13 14558412 14558663 -87314506 - AluSq SINE Alu -2 311 60 240 200 0 0 chr13 14559292 14559342 -87313827 + GA-rich Low_complexity Low_complexity 3 52 0 511 297 82 22 chr13 14559849 14560081 -87313088 - MLT1L LTR MaLR -362 253 8 2058 138 42 14 chr13 14560104 14560458 -87312711 - THE1B LTR MaLR 0 364 1 184 243 54 0 chr13 14560649 14560686 -87312483 - MIR SINE MIR -185 77 39 683 205 0 0 chr13 14561041 14561158 -87312011 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr13 14561162 14561191 -87311978 + AT_rich Low_complexity Low_complexity 1 29 0 326 304 193 19 chr13 14561514 14561721 -87311448 - MIR SINE MIR 0 262 20 204 303 49 37 chr13 14562403 14562565 -87310604 + L2 LINE L2 2511 2674 -640 285 167 0 0 chr13 14564074 14564122 -87309047 + MIR SINE MIR 65 112 -150 207 293 101 20 chr13 14564246 14564345 -87308824 + MIR SINE MIR 156 262 0 2199 122 0 25 chr13 14564680 14565001 -87308168 - AluSq SINE Alu 0 313 1 255 313 73 10 chr13 14566047 14566143 -87307026 - L2 LINE L2 -18 3254 3153 1239 62 31 0 chr13 14566564 14566724 -87306445 - AluY SINE Alu -8 303 139 207 238 0 0 chr13 14568834 14568876 -87304293 - L2 LINE L2 -10 3303 3262 255 368 120 8 chr13 14569177 14569310 -87303859 + MIR SINE MIR 2 149 -113 1237 201 60 3 chr13 14569558 14569907 -87303262 - Charlie5 DNA MER1_type -10 2602 2234 532 194 11 80 chr13 14569916 14569960 -87303209 - MER3 DNA MER1_type 6 168 123 2215 102 3 0 chr13 14569960 14570254 -87302915 + AluSx SINE Alu 1 295 -17 532 194 11 80 chr13 14570254 14570384 -87302785 - MER3 DNA MER1_type -39 123 6 22 0 0 0 chr13 14570389 14570411 -87302758 + AT_rich Low_complexity Low_complexity 1 22 0 763 123 0 16 chr13 14571024 14571146 -87302023 + AluSg/x SINE Alu 189 308 -4 2386 86 0 6 chr13 14571720 14572033 -87301136 + AluY SINE Alu 1 311 0 1788 163 23 7 chr13 14572164 14572471 -87300698 - AluJo SINE Alu 0 312 1 332 304 44 15 chr13 14572575 14572710 -87300459 - MER5B DNA MER1_type 0 178 40 2386 91 0 0 chr13 14573039 14573335 -87299834 + AluSc SINE Alu 1 296 -13 2304 117 0 3 chr13 14574291 14574600 -87298569 - AluSx SINE Alu -4 308 1 2455 72 0 3 chr13 14574806 14575110 -87298059 + AluY SINE Alu 1 303 -8 29 60 0 0 chr13 14575267 14575317 -87297852 + AT_rich Low_complexity Low_complexity 1 50 0 389 274 97 0 chr13 14576063 14576187 -87296982 + MIR SINE MIR 78 213 -49 25 0 0 0 chr13 14576587 14576612 -87296557 + AT_rich Low_complexity Low_complexity 1 25 0 888 165 58 5 chr13 14576674 14576862 -87296307 - L1PB4 LINE L1 -2 6154 5957 205 268 107 0 chr13 14579882 14579938 -87293231 - L2 LINE L2 0 3272 3211 267 119 45 30 chr13 14580029 14580096 -87293073 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 650 228 0 102 chr13 14580558 14580843 -87292326 + MER112 DNA MER1_type 4 259 -1 358 310 52 9 chr13 14581095 14581211 -87291958 - L2 LINE L2 -15 3257 3137 286 287 66 103 chr13 14581472 14581744 -87291425 + L2 LINE L2 3010 3271 -1 1956 141 7 3 chr13 14582443 14582734 -87290435 - AluSq SINE Alu -21 292 1 1751 179 3 14 chr13 14582741 14583032 -87290137 - AluJo SINE Alu -24 288 1 436 279 48 33 chr13 14583036 14583308 -87289861 - L1MC5 LINE L1 -168 7793 7518 351 272 106 61 chr13 14584081 14584261 -87288908 - L2 LINE L2 -10 3262 3075 218 355 47 0 chr13 14584289 14584396 -87288773 + L2 LINE L2 2926 3037 -235 321 311 149 19 chr13 14584785 14584946 -87288223 - MIR3 SINE MIR -11 197 16 587 193 155 0 chr13 14585078 14585239 -87287930 + MER5A DNA MER1_type 1 186 -3 2435 65 3 3 chr13 14586037 14586343 -87286826 - AluY SINE Alu -5 306 1 2206 137 7 29 chr13 14586672 14586847 -87286322 + L1MB1 LINE L1 5749 5926 -242 8765 62 5 1 chr13 14586847 14588777 -87284392 - L1PA6 LINE L1 -5 6149 4218 2206 137 7 29 chr13 14588777 14589009 -87284160 + L1MB1 LINE L1 5926 6147 -21 41 36 0 0 chr13 14589010 14589065 -87284104 + AT_rich Low_complexity Low_complexity 1 55 0 355 283 167 0 chr13 14589110 14589230 -87283939 + MIR SINE MIR 49 188 -74 491 294 23 55 chr13 14590594 14590656 -87282513 + L2 LINE L2 3103 3165 -148 267 114 0 0 chr13 14590656 14590700 -87282469 + (TG)n Simple_repeat Simple_repeat 1 44 0 491 294 23 55 chr13 14590700 14590855 -87282314 + L2 LINE L2 3165 3313 0 355 130 101 0 chr13 14591717 14591786 -87281383 + L1MB3 LINE L1 6106 6181 -2 201 263 26 13 chr13 14594177 14594253 -87278916 + GA-rich Low_complexity Low_complexity 5 81 0 685 259 142 13 chr13 14597423 14597655 -87275514 - MIR SINE MIR 0 262 1 1842 161 0 0 chr13 14598480 14598753 -87274416 - AluSx SINE Alu -39 273 1 1215 294 91 47 chr13 14599750 14601249 -87271920 - L1MEd LINE L1 -812 1678 16 248 329 82 53 chr13 14601454 14601661 -87271508 + L2 LINE L2 2845 3057 -215 246 268 188 0 chr13 14601795 14601907 -87271262 - MER112 DNA MER1_type -97 163 31 255 277 67 42 chr13 14601953 14602000 -87271169 + L2 LINE L2 3151 3195 -77 291 93 0 0 chr13 14602000 14602043 -87271126 + (CA)n Simple_repeat Simple_repeat 2 44 0 255 277 67 42 chr13 14602043 14602114 -87271055 + L2 LINE L2 3195 3272 0 498 251 107 27 chr13 14602591 14602778 -87270391 + MIR SINE MIR 42 243 -19 221 232 111 61 chr13 14603408 14603507 -87269662 + MIR SINE MIR 41 144 -64 21 36 0 0 chr13 14605492 14605520 -87267649 + AT_rich Low_complexity Low_complexity 1 28 0 204 284 171 40 chr13 14606537 14606613 -87266556 - L2 LINE L2 -1168 2146 2081 1521 154 64 57 chr13 14606613 14606911 -87266258 + AluJb SINE Alu 5 304 -8 204 284 171 40 chr13 14606911 14607161 -87266008 - L2 LINE L2 -1233 2081 1777 2420 71 0 10 chr13 14607195 14607506 -87265663 + AluY SINE Alu 1 308 -3 287 290 122 38 chr13 14608928 14609059 -87264110 - MIR SINE MIR -109 153 12 450 113 0 0 chr13 14609192 14609263 -87263906 + L1PB4 LINE L1 6072 6142 -14 1672 209 88 59 chr13 14610129 14610821 -87262348 - L1MC5 LINE L1 -49 7912 7201 7173 104 24 8 chr13 14611348 14612466 -87260703 - L1MA2 LINE L1 0 6304 5170 2276 92 10 0 chr13 14612466 14612771 -87260398 - AluSg SINE Alu -2 308 1 7173 104 24 8 chr13 14612771 14612936 -87260233 - L1MA2 LINE L1 -1134 5170 5009 525 186 11 33 chr13 14613053 14613236 -87259933 + CT-rich Low_complexity Low_complexity 1 179 0 205 282 0 56 chr13 14613544 14613615 -87259554 - L2 LINE L2 -202 3070 3004 2042 109 6 39 chr13 14613642 14613954 -87259215 + AluSx SINE Alu 4 305 -7 2219 104 7 3 chr13 14614482 14614789 -87258380 - AluSx SINE Alu -4 308 1 527 140 93 0 chr13 14614958 14615065 -87258104 + L1MB4 LINE L1 6061 6177 -3 21 0 0 0 chr13 14615068 14615089 -87258080 + AT_rich Low_complexity Low_complexity 1 21 0 229 259 0 35 chr13 14615702 14615760 -87257409 - L2 LINE L2 -253 3060 3005 216 97 0 0 chr13 14616382 14616413 -87256756 + (TA)n Simple_repeat Simple_repeat 1 31 0 276 111 0 0 chr13 14616460 14616505 -87256664 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr13 14616593 14616621 -87256548 + AT_rich Low_complexity Low_complexity 1 28 0 1767 121 93 0 chr13 14617221 14617507 -87255662 - AluSc SINE Alu 0 310 1 23 33 0 0 chr13 14617537 14617567 -87255602 + AT_rich Low_complexity Low_complexity 1 30 0 4660 142 31 21 chr13 14617633 14617794 -87255375 - L1MA7 LINE L1 -10 6281 6123 1549 224 64 0 chr13 14617794 14618137 -87255032 - MLT1A1 LTR MaLR 0 365 1 4660 142 31 21 chr13 14618137 14618837 -87254332 - L1MA7 LINE L1 -168 6123 5411 317 315 85 24 chr13 14619534 14619699 -87253470 - L2 LINE L2 -5 3308 3134 2351 38 0 14 chr13 14620508 14620801 -87252368 + L1PA4 LINE L1 5866 6154 -1 1631 173 24 10 chr13 14620812 14621101 -87252068 + AluJb SINE Alu 2 294 -18 320 279 12 23 chr13 14621342 14621428 -87251741 + MIR SINE MIR 8 92 -170 467 243 197 0 chr13 14621438 14621590 -87251579 + MER5A DNA MER1_type 8 189 0 2537 109 3 14 chr13 14621783 14622151 -87251018 + THE1B LTR MaLR 1 364 0 1236 214 50 34 chr13 14622239 14622561 -87250608 + MLT1A1 LTR MaLR 1 327 -38 212 222 22 0 chr13 14622827 14622872 -87250297 - MIR SINE MIR -10 252 207 23 0 0 0 chr13 14623173 14623196 -87249973 + AT_rich Low_complexity Low_complexity 1 23 0 194 66 26 79 chr13 14623196 14623272 -87249897 + (TTAAA)n Simple_repeat Simple_repeat 5 76 0 202 129 54 65 chr13 14623276 14623369 -87249800 + (TTATA)n Simple_repeat Simple_repeat 1 92 0 984 252 76 25 chr13 14623560 14623915 -87249254 - MLT1J LTR MaLR -2 509 36 2173 107 40 0 chr13 14624203 14624502 -87248667 + AluSx SINE Alu 1 311 -1 309 284 44 98 chr13 14624702 14624927 -87248242 - L2 LINE L2 -35 3237 3025 200 300 33 121 chr13 14625387 14625601 -87247568 - L2 LINE L2 -217 3055 2869 1622 141 107 50 chr13 14625601 14626004 -87247165 - LTR37A LTR ERV1 0 426 1 200 300 33 121 chr13 14626004 14626062 -87247107 - L2 LINE L2 -403 2869 2807 418 317 63 7 chr13 14626354 14626496 -87246673 - L2 LINE L2 -1 3271 3122 185 381 95 7 chr13 14628080 14628337 -87244832 - L2 LINE L2 -1219 2095 1811 2086 143 0 25 chr13 14628337 14628652 -87244517 + AluSx SINE Alu 4 310 -2 185 381 95 7 chr13 14628652 14628667 -87244502 - L2 LINE L2 -1503 1811 1799 532 230 157 6 chr13 14629425 14629603 -87243566 - MIR SINE MIR -11 251 47 723 172 96 13 chr13 14631321 14631478 -87241691 - L1MD3 LINE L1 0 7995 7826 475 167 33 0 chr13 14631494 14631584 -87241585 - MER21A LTR ERV1 -358 573 481 571 183 0 30 chr13 14631584 14631715 -87241454 - L1MC3 LINE L1 -161 7624 7498 373 242 72 20 chr13 14633006 14633276 -87239893 - L1ME4a LINE L1 -164 5957 5671 1151 248 69 24 chr13 14633305 14633804 -87239365 - L1ME4a LINE L1 -505 5616 4942 423 286 71 24 chr13 14634983 14635151 -87238018 + MIR3 SINE MIR 8 183 -25 26 30 0 0 chr13 14635359 14635392 -87237777 + AT_rich Low_complexity Low_complexity 1 33 0 939 116 52 0 chr13 14635732 14635887 -87237282 - L1MB7 LINE L1 -20 6164 6002 288 285 105 2 chr13 14637267 14637443 -87235726 - MIR SINE MIR -16 246 13 5418 111 9 4 chr13 14637597 14637787 -87235382 - L1PB1 LINE L1 0 6151 5964 2292 113 0 0 chr13 14637787 14638088 -87235081 - AluSg SINE Alu -9 301 1 5418 111 9 4 chr13 14638088 14639220 -87233949 - L1PB1 LINE L1 -187 5964 4841 4424 189 2 12 chr13 14639220 14639290 -87233879 + L1 LINE L1 3859 3928 -2218 2422 82 3 0 chr13 14639290 14639594 -87233575 + AluY SINE Alu 1 305 -6 4424 189 2 12 chr13 14639594 14640446 -87232723 + L1 LINE L1 3928 4772 -1374 2090 100 0 24 chr13 14640944 14641261 -87231908 - AluSx SINE Alu 0 310 1 21 0 0 0 chr13 14642937 14642958 -87230211 + AT_rich Low_complexity Low_complexity 1 21 0 2254 91 0 14 chr13 14644622 14644919 -87228250 + AluSc SINE Alu 3 295 -14 390 239 65 0 chr13 14645915 14646007 -87227162 - MER5A DNA MER1_type 0 189 92 1354 135 23 0 chr13 14646007 14646222 -87226947 - MLT1B LTR MaLR 0 390 171 266 128 0 0 chr13 14646231 14646278 -87226891 + MLT1B LTR MaLR 152 198 -192 588 208 16 0 chr13 14646339 14646464 -87226705 - MLT1B LTR MaLR -263 127 1 356 277 84 54 chr13 14646862 14647028 -87226141 - L1ME3A LINE L1 -8 6162 5992 1963 105 70 14 chr13 14647179 14647464 -87225705 - AluSx SINE Alu -10 302 2 345 24 0 0 chr13 14647572 14647614 -87225555 + (TG)n Simple_repeat Simple_repeat 2 43 0 2347 91 0 0 chr13 14647942 14648240 -87224929 - AluSq SINE Alu -15 298 1 3775 153 20 45 chr13 14649594 14650347 -87222822 + L1MB7 LINE L1 5443 6176 -8 577 261 65 16 chr13 14650356 14650540 -87222629 + MIR SINE MIR 28 220 -42 1930 147 6 16 chr13 14650889 14651203 -87221966 - AluJb SINE Alu -1 311 1 232 25 75 0 chr13 14655239 14655279 -87217890 + T-rich Low_complexity Low_complexity 2 44 0 28 0 0 0 chr13 14657056 14657084 -87216085 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr13 14657146 14657189 -87215980 + AT_rich Low_complexity Low_complexity 1 43 0 511 249 54 54 chr13 14657573 14657758 -87215411 - L2 LINE L2 -11 3302 3118 438 331 23 17 chr13 14658632 14658807 -87214362 - MER5A DNA MER1_type -13 176 1 635 222 211 31 chr13 14659355 14659549 -87213620 + MIR SINE MIR 12 240 -22 181 257 200 0 chr13 14659932 14660002 -87213167 - L2 LINE L2 -50 3263 3180 262 335 123 33 chr13 14660219 14660431 -87212738 - L2 LINE L2 -474 2840 2610 226 304 0 0 chr13 14660847 14660903 -87212266 + L2 LINE L2 3187 3242 -71 814 258 22 35 chr13 14660930 14661159 -87212010 - MIR SINE MIR -27 235 10 303 302 68 68 chr13 14661378 14661626 -87211543 + L1M4 LINE L1 4600 4847 -1299 320 348 129 11 chr13 14662243 14662599 -87210570 - L2 LINE L2 -456 2858 2461 2938 6 0 0 chr13 14662650 14662967 -87210202 - AluYb8 SINE Alu -1 317 1 2274 97 0 0 chr13 14663447 14663746 -87209423 - AluSg1 SINE Alu 0 309 11 352 300 81 49 chr13 14663753 14663976 -87209193 + L2 LINE L2 3027 3256 -16 209 324 56 28 chr13 14665231 14665339 -87207830 - MIR SINE MIR -80 182 72 269 235 59 0 chr13 14665520 14665588 -87207581 - MIR SINE MIR -7 255 184 354 305 66 13 chr13 14665734 14665885 -87207284 + MIR SINE MIR 53 211 -51 269 188 17 17 chr13 14666130 14666247 -87206922 + (TA)n Simple_repeat Simple_repeat 2 118 0 23 78 0 0 chr13 14666265 14666316 -87206853 + AT_rich Low_complexity Low_complexity 1 51 0 283 236 150 48 chr13 14667571 14667716 -87205453 + MIR SINE MIR 17 166 -67 2289 218 60 22 chr13 14668906 14670835 -87202334 + L1ME1 LINE L1 4125 6334 0 462 234 63 51 chr13 14670874 14671032 -87202137 - MIR SINE MIR -51 211 52 23 0 0 0 chr13 14671528 14671551 -87201618 + AT_rich Low_complexity Low_complexity 1 23 0 256 218 143 113 chr13 14671641 14671774 -87201395 + MIR SINE MIR 113 249 -13 2120 116 24 0 chr13 14673448 14673740 -87199429 + AluSp SINE Alu 1 299 -14 26 64 0 0 chr13 14673921 14673968 -87199201 + AT_rich Low_complexity Low_complexity 1 47 0 239 337 65 0 chr13 14674190 14674282 -87198887 - L2 LINE L2 -12 3301 3204 2196 108 14 0 chr13 14675756 14676052 -87197117 + AluSx SINE Alu 2 301 -11 225 0 0 0 chr13 14676071 14676096 -87197073 + (A)n Simple_repeat Simple_repeat 1 25 0 201 74 0 0 chr13 14676580 14676607 -87196562 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 28 71 0 0 chr13 14676620 14676676 -87196493 + AT_rich Low_complexity Low_complexity 1 56 0 186 333 0 17 chr13 14678174 14678234 -87194935 + MIR SINE MIR 29 87 -121 21 0 0 0 chr13 14678526 14678547 -87194622 + AT_rich Low_complexity Low_complexity 1 21 0 317 213 64 78 chr13 14680499 14680640 -87192529 + MIR SINE MIR 65 203 -59 195 299 31 15 chr13 14682206 14682288 -87190881 - MIR SINE MIR -63 145 84 2763 138 29 7 chr13 14684341 14684784 -87188385 - MLT1C LTR MaLR 0 467 15 1331 182 55 115 chr13 14685139 14685633 -87187536 - MLT2C2 LTR ERVL 0 464 1 242 243 120 35 chr13 14686076 14686191 -87186978 + MIR SINE MIR 30 151 -89 832 278 47 20 chr13 14686489 14686744 -87186425 - MIR SINE MIR 0 262 1 894 156 66 71 chr13 14687066 14687277 -87185892 - MER20 DNA MER1_type -7 212 3 1207 180 43 0 chr13 14687427 14687660 -87185509 + L1MD3 LINE L1 7726 7968 -27 252 0 0 0 chr13 14687664 14687692 -87185477 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2062 127 0 0 chr13 14687694 14687977 -87185192 - AluSx SINE Alu -29 283 1 2146 120 10 3 chr13 14688442 14688750 -87184419 - AluSx SINE Alu -2 310 1 231 104 5 134 chr13 14689163 14689365 -87183804 + (ATGTG)n Simple_repeat Simple_repeat 1 176 0 285 306 0 39 chr13 14689408 14689588 -87183581 + (TATATG)n Simple_repeat Simple_repeat 5 177 0 701 251 29 6 chr13 14691648 14691823 -87181346 - MIR SINE MIR -30 232 54 221 275 30 8 chr13 14692044 14692175 -87180994 + (TA)n Simple_repeat Simple_repeat 2 135 0 217 338 125 6 chr13 14694004 14694164 -87179005 - MIR SINE MIR -21 241 63 1919 136 0 17 chr13 14694505 14694829 -87178340 + AluSx SINE Alu 1 319 0 203 342 83 64 chr13 14695072 14695338 -87177831 - L2 LINE L2 -4 3268 2998 335 389 15 0 chr13 14695848 14695979 -87177190 - L3 LINE CR1 -2 1575 1443 180 403 0 0 chr13 14696404 14696476 -87176693 - MIR SINE MIR -110 152 81 459 0 0 0 chr13 14696710 14696761 -87176408 + (TG)n Simple_repeat Simple_repeat 2 52 0 2391 99 0 0 chr13 14697441 14697753 -87175416 - AluSx SINE Alu 0 312 1 2350 97 0 3 chr13 14698099 14698408 -87174761 - AluSg SINE Alu -2 308 1 2033 103 69 3 chr13 14698534 14698824 -87174345 + AluSx SINE Alu 4 312 0 329 267 47 0 chr13 14698932 14699018 -87174151 + MIR SINE MIR 63 152 -110 199 361 54 39 chr13 14699737 14699867 -87173302 + L2 LINE L2 3133 3264 -8 210 37 0 0 chr13 14699881 14699908 -87173261 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2404 76 0 3 chr13 14700714 14701015 -87172154 + AluSc SINE Alu 1 300 -9 974 186 12 0 chr13 14701071 14701243 -87171926 + AluJo SINE Alu 1 174 -138 1114 160 0 17 chr13 14701247 14701428 -87171741 + FRAM SINE Alu 1 176 0 25 51 0 0 chr13 14702912 14702951 -87170218 + AT_rich Low_complexity Low_complexity 1 39 0 1155 266 62 19 chr13 14705045 14705343 -87167826 + L1ME LINE L1 2706 3037 -3109 7739 129 30 9 chr13 14705343 14706614 -87166555 - HSMAR2 DNA Mariner 0 1302 5 1155 266 62 19 chr13 14706614 14706833 -87166336 + L1ME LINE L1 3037 3245 -2901 3162 274 59 52 chr13 14706877 14708768 -87164401 + L1ME LINE L1 3510 5412 -750 2186 144 11 19 chr13 14708768 14709136 -87164033 - MLT1A1 LTR MaLR 0 365 1 3162 274 59 52 chr13 14709136 14709162 -87164007 + L1ME LINE L1 5412 5436 -726 638 219 72 57 chr13 14709146 14709425 -87163744 + L1ME3A LINE L1 5876 6158 -12 * 1346 37 0 75 chr13 14709484 14709720 -87163449 - AluY SINE Alu 0 331 110 2182 126 3 0 chr13 14709957 14710259 -87162910 - AluSx SINE Alu -9 303 1 2280 98 0 7 chr13 14710808 14711113 -87162056 - AluSx SINE Alu -9 303 1 228 122 0 0 chr13 14713786 14713827 -87159342 + (TG)n Simple_repeat Simple_repeat 2 42 0 348 317 174 22 chr13 14714681 14714905 -87158264 + MIR SINE MIR 2 259 -3 208 147 0 0 chr13 14715504 14715538 -87157631 + (TA)n Simple_repeat Simple_repeat 2 35 0 403 243 314 16 chr13 14715726 14715911 -87157258 + MIR SINE MIR 8 247 -15 284 234 81 9 chr13 14716059 14716170 -87156999 + L1ME LINE L1 5541 5659 -462 488 216 43 0 chr13 14716248 14716364 -87156805 - LTR16A LTR ERVL -6 444 324 286 229 14 0 chr13 14716841 14716911 -87156258 + MLT1F LTR MaLR 279 349 -193 2451 141 57 0 chr13 14717075 14717480 -87155689 - MSTC LTR MaLR 0 428 1 818 219 13 0 chr13 14717665 14717820 -87155349 + FRAM SINE Alu 2 158 -8 455 358 81 44 chr13 14718009 14718770 -87154399 + L2 LINE L2 2469 3271 -1 2130 118 7 7 chr13 14719880 14720176 -87152993 + AluSx SINE Alu 1 296 -16 2145 110 10 0 chr13 14720658 14720949 -87152220 + AluSx SINE Alu 1 294 -18 237 297 40 0 chr13 14721212 14721286 -87151883 - MIR SINE MIR -1 261 185 438 258 242 6 chr13 14721309 14721491 -87151678 + MIR SINE MIR 4 228 -34 500 301 15 8 chr13 14721513 14721646 -87151523 - MIR SINE MIR -106 156 23 205 362 135 9 chr13 14721688 14721917 -87151252 + L2 LINE L2 2827 3084 -188 347 341 89 15 chr13 14721998 14722133 -87151036 - L2 LINE L2 -1 3271 3127 2266 122 3 0 chr13 14722133 14722437 -87150732 + AluSx SINE Alu 1 305 -7 245 307 191 37 chr13 14722922 14723859 -87149310 - L2 LINE L2 -559 2755 1607 235 277 116 27 chr13 14724252 14724364 -87148805 - L2 LINE L2 -42 3271 3150 217 354 50 10 chr13 14724671 14724770 -87148399 + L2 LINE L2 3170 3272 0 28 0 0 0 chr13 14724927 14724955 -87148214 + AT_rich Low_complexity Low_complexity 1 28 0 717 267 27 43 chr13 14725531 14725789 -87147380 - MIR SINE MIR -5 257 4 604 178 8 0 chr13 14726429 14726547 -87146622 + L1MB3 LINE L1 6058 6176 -7 1910 127 42 3 chr13 14728400 14728684 -87144485 + AluSx SINE Alu 1 295 -17 1295 77 120 29 chr13 14731547 14731755 -87141414 - MER30 DNA MER1_type 0 230 4 184 318 47 35 chr13 14731757 14731842 -87141327 + L2 LINE L2 3187 3272 0 958 164 5 0 chr13 14732439 14732634 -87140535 + L1MA4 LINE L1 6099 6294 -6 1884 173 14 0 chr13 14732786 14733081 -87140088 - AluJb SINE Alu -13 299 1 21 36 0 0 chr13 14733105 14733133 -87140036 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 14734503 14734524 -87138645 + AT_rich Low_complexity Low_complexity 1 21 0 294 297 45 63 chr13 14734634 14734856 -87138313 - MIR SINE MIR -1 261 44 305 324 81 7 chr13 14734881 14735017 -87138152 + MIR SINE MIR 61 206 -56 228 89 71 0 chr13 14735034 14735090 -87138079 + T-rich Low_complexity Low_complexity 1 60 0 278 170 0 0 chr13 14735281 14735328 -87137841 - L2 LINE L2 -1 3312 3266 2249 107 3 0 chr13 14735610 14735908 -87137261 + AluSg SINE Alu 1 299 -11 2459 61 0 3 chr13 14736304 14736600 -87136569 - AluY SINE Alu -16 295 1 2270 34 0 4 chr13 14736688 14736951 -87136218 + AluY SINE Alu 1 262 -49 1939 166 3 0 chr13 14738716 14739024 -87134145 - AluSx SINE Alu -3 309 1 1256 223 80 136 chr13 14739054 14739625 -87133544 - L2 LINE L2 -1 3312 2700 492 163 10 20 chr13 14739625 14739723 -87133446 - AluS SINE Alu -216 97 1 1256 223 80 136 chr13 14739723 14739913 -87133256 - L2 LINE L2 -613 2700 2501 353 190 293 9 chr13 14739912 14740028 -87133141 + MIR SINE MIR 94 242 -20 * 226 259 0 0 chr13 14740040 14740094 -87133075 + (TTA)n Simple_repeat Simple_repeat 3 56 0 395 227 47 86 chr13 14740094 14740174 -87132995 - L2 LINE L2 -816 2498 2423 2165 101 0 17 chr13 14740174 14740470 -87132699 - AluSx SINE Alu -21 291 1 395 227 47 86 chr13 14740470 14740517 -87132652 - L2 LINE L2 -891 2423 2376 1520 156 25 83 chr13 14740711 14740947 -87132222 + AluJo SINE Alu 1 214 -98 2090 120 3 30 chr13 14740947 14741248 -87131921 - AluSx SINE Alu -19 293 1 1520 156 25 83 chr13 14741248 14741337 -87131832 + AluJo SINE Alu 214 307 -5 196 273 102 11 chr13 14741853 14741941 -87131228 + L2 LINE L2 3192 3287 -26 283 287 143 42 chr13 14742515 14742780 -87130389 - L2 LINE L2 -1076 2238 1947 23 33 0 0 chr13 14743372 14743402 -87129767 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 14744450 14744472 -87128697 + AT_rich Low_complexity Low_complexity 1 22 0 311 289 59 9 chr13 14744529 14744675 -87128494 - MIR SINE MIR -78 130 1 2431 70 3 0 chr13 14744963 14745261 -87127908 - AluY SINE Alu -12 299 1 212 323 0 16 chr13 14747070 14747132 -87126037 - L2 LINE L2 -5 3308 3248 21 71 0 0 chr13 14747135 14747177 -87125992 + AT_rich Low_complexity Low_complexity 1 42 0 2624 114 5 0 chr13 14747269 14747654 -87125515 - L1PA12 LINE L1 0 6168 5782 4151 83 34 0 chr13 14747654 14748295 -87124874 - L1PA12 LINE L1 -287 5881 5221 1148 258 66 10 chr13 14749632 14750024 -87123145 - MLT1J2 LTR MaLR -1 449 36 344 296 204 0 chr13 14750963 14751115 -87122054 - MIR SINE MIR 0 262 80 813 161 0 0 chr13 14751216 14751346 -87121823 + FLAM_A SINE Alu 4 133 0 2039 149 0 3 chr13 14751349 14751650 -87121519 + AluJb SINE Alu 1 300 -12 1942 143 10 3 chr13 14752553 14752846 -87120323 + AluSx SINE Alu 1 295 -17 228 35 0 0 chr13 14753549 14753578 -87119591 + (CA)n Simple_repeat Simple_repeat 2 30 0 2167 96 4 0 chr13 14755642 14755957 -87117212 - AluSc SINE Alu 0 316 1 831 144 8 0 chr13 14757096 14757228 -87115941 - FLAM_C SINE Alu 0 133 1 324 278 179 37 chr13 14757356 14757518 -87115651 - MIR SINE MIR -58 204 20 1434 191 41 3 chr13 14758502 14758817 -87114352 + L1MB4 LINE L1 5777 6103 -77 313 101 0 72 chr13 14758926 14758995 -87114174 + L1MB2 LINE L1 6108 6171 0 24 53 0 0 chr13 14759617 14759655 -87113514 + AT_rich Low_complexity Low_complexity 1 38 0 226 0 0 0 chr13 14759735 14759760 -87113409 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 2045 131 0 0 chr13 14759760 14760042 -87113127 - AluSq SINE Alu -1 306 1 944 259 139 48 chr13 14760201 14760862 -87112307 - L1ME4a LINE L1 -2 6119 5399 764 146 15 15 chr13 14761019 14761149 -87112020 + FLAM_C SINE Alu 2 131 -2 2326 73 14 0 chr13 14762167 14762454 -87110715 - AluSg SINE Alu -19 291 1 24 32 0 0 chr13 14762497 14762528 -87110641 + AT_rich Low_complexity Low_complexity 1 31 0 1573 161 7 36 chr13 14762531 14762805 -87110364 + AluJo SINE Alu 1 266 -46 207 195 0 0 chr13 14762806 14762847 -87110322 + (TAGA)n Simple_repeat Simple_repeat 3 43 0 380 319 30 0 chr13 14763581 14763716 -87109453 - L2 LINE L2 -238 3034 2896 275 337 99 29 chr13 14763742 14763985 -87109184 - L2 LINE L2 -512 2802 2543 25 0 0 0 chr13 14764476 14764501 -87108668 + AT_rich Low_complexity Low_complexity 1 25 0 275 255 94 101 chr13 14765322 14765471 -87107698 + L2 LINE L2 3125 3272 0 1894 87 0 0 chr13 14765494 14765748 -87107421 + L1PA7 LINE L1 5901 6154 0 516 297 165 39 chr13 14766897 14767261 -87105908 - L3 LINE CR1 -5 1572 1163 360 262 0 19 chr13 14767627 14767734 -87105435 - MLT1K LTR MaLR -162 426 322 180 154 19 96 chr13 14767976 14768028 -87105141 + L2 LINE L2 3216 3263 -9 257 306 104 0 chr13 14768409 14768543 -87104626 + L3 LINE CR1 1109 1256 -321 623 184 184 11 chr13 14768755 14769016 -87104153 - MER33 DNA MER1_type 0 324 19 23 54 0 0 chr13 14769398 14769435 -87103734 + AT_rich Low_complexity Low_complexity 1 37 0 258 32 0 0 chr13 14771133 14771164 -87102005 + (CA)n Simple_repeat Simple_repeat 2 32 0 1881 151 13 13 chr13 14773454 14773752 -87099417 + AluJb SINE Alu 1 298 -14 688 291 36 28 chr13 14773872 14774020 -87099149 + MIR SINE MIR 7 159 -103 2435 111 3 3 chr13 14774020 14774380 -87098789 + MER46B DNA MER2_type 1 235 -1 688 291 36 28 chr13 14774380 14774478 -87098691 + MIR SINE MIR 159 255 -7 2116 127 3 0 chr13 14775535 14775827 -87097342 + AluSx SINE Alu 3 295 -17 585 105 12 18 chr13 14777798 14778046 -87095123 + AluSx SINE Alu 1 302 -10 1940 166 23 3 chr13 14778157 14778507 -87094662 - MLT1A1 LTR MaLR -8 357 1 2161 131 3 3 chr13 14778543 14778848 -87094321 + AluSg SINE Alu 1 305 -5 348 59 0 0 chr13 14779171 14779222 -87093947 + Alu SINE Alu 252 302 0 431 293 58 29 chr13 14780358 14780532 -87092637 - MIR SINE MIR -56 206 28 237 361 13 48 chr13 14780604 14780769 -87092400 + MIR SINE MIR 38 195 -67 1300 227 8 11 chr13 14780879 14781143 -87092026 - AluJb SINE Alu -49 263 1 2271 76 0 10 chr13 14781154 14781455 -87091714 - AluY SINE Alu -13 298 1 2842 151 103 18 chr13 14781455 14782049 -87091120 - L1MB2 LINE L1 -47 6124 5473 189 0 0 0 chr13 14782049 14782070 -87091099 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2842 151 103 18 chr13 14782070 14782097 -87091072 - L1MB2 LINE L1 -698 5473 5450 180 0 0 0 chr13 14782194 14782214 -87090955 + (TG)n Simple_repeat Simple_repeat 2 21 0 1984 136 0 3 chr13 14782214 14782500 -87090669 - AluSx SINE Alu -27 285 1 605 154 4 0 chr13 14782739 14782859 -87090310 - LTR12 LTR ERV1 0 714 49 309 224 0 0 chr13 14782859 14782935 -87090234 - LTR30 LTR ERV1 -98 624 549 835 55 0 0 chr13 14782937 14783046 -87090123 - LTR12 LTR ERV1 -440 274 166 * 1175 111 16 136 chr13 14783021 14783342 -87089827 - LTR12 LTR ERV1 -475 239 1 1278 277 61 79 chr13 14783388 14783642 -87089527 - L1MEd LINE L1 -5011 1108 851 2298 104 0 10 chr13 14783642 14783951 -87089218 - AluSx SINE Alu -6 306 1 1278 277 61 79 chr13 14783951 14784823 -87088346 - L1MEd LINE L1 -5268 851 2 386 152 0 159 chr13 14785932 14786077 -87087092 + L1MA8 LINE L1 6166 6287 -4 496 306 47 50 chr13 14786147 14786448 -87086721 + L1MEd LINE L1 2 301 -5818 2389 88 0 7 chr13 14786479 14786785 -87086384 + AluY SINE Alu 1 304 -7 234 0 0 0 chr13 14786785 14786811 -87086358 + (TA)n Simple_repeat Simple_repeat 1 26 0 215 31 31 0 chr13 14786810 14786842 -87086327 + (TAAAAA)n Simple_repeat Simple_repeat 3 35 0 * 3764 118 3 20 chr13 14786866 14787467 -87085702 - HSMAR2 DNA Mariner -1 1301 711 2242 123 0 0 chr13 14787468 14787777 -87085392 - AluSx SINE Alu -3 309 1 1168 178 50 4 chr13 14788267 14788508 -87084661 - MLT1D LTR MaLR 0 505 254 247 297 14 0 chr13 14790047 14790121 -87083048 + MER117 DNA MER1_type 119 193 -4 370 286 137 44 chr13 14790173 14790400 -87082769 + MIR SINE MIR 3 250 -12 2475 60 0 3 chr13 14842948 14843249 -87029920 + AluY SINE Alu 1 300 -11 1672 91 17 4 chr13 14843264 14843495 -87029674 + L1PB1 LINE L1 5896 6129 -22 2050 131 0 0 chr13 14844304 14844609 -87028560 - AluJb SINE Alu 0 305 1 32 0 0 0 chr13 14844807 14844839 -87028330 + AT_rich Low_complexity Low_complexity 1 32 0 270 200 0 0 chr13 14845041 14845086 -87028083 + FRAM/FAM SINE Alu 1 37 -129 950 144 0 0 chr13 14845088 14845220 -87027949 + AluJo/FRAM SINE Alu 156 287 -25 751 226 112 108 chr13 14845268 14846181 -87026988 + L1MC5 LINE L1 7036 7951 -10 479 209 9 204 chr13 14846229 14846449 -87026720 + MER5B DNA MER1_type 1 177 -1 405 323 29 31 chr13 14846733 14846944 -87026225 - MIR SINE MIR -50 212 3 2276 86 21 0 chr13 14847326 14847616 -87025553 - AluSg SINE Alu -14 296 1 637 115 16 24 chr13 14847744 14847934 -87025235 + AluSx SINE Alu 59 302 -10 784 125 0 0 chr13 14847943 14848047 -87025122 + AluSg SINE Alu 2 105 -205 2237 82 3 7 chr13 14850820 14851111 -87022058 + AluSg1 SINE Alu 1 290 -19 30 0 0 0 chr13 14851481 14851511 -87021658 + AT_rich Low_complexity Low_complexity 1 30 0 396 336 15 0 chr13 14852132 14852269 -87020900 + MIR3 SINE MIR 54 192 -16 1926 138 0 0 chr13 14853796 14854071 -87019098 + AluSx SINE Alu 2 276 -36 206 185 0 37 chr13 14854782 14854836 -87018333 + T-rich Low_complexity Low_complexity 5 56 0 356 319 154 12 chr13 14855050 14855219 -87017950 - MER91A DNA MER1_type 0 196 4 180 0 0 0 chr13 14855580 14855600 -87017569 + (A)n Simple_repeat Simple_repeat 1 20 0 237 33 0 0 chr13 14855600 14855630 -87017539 + (TA)n Simple_repeat Simple_repeat 2 31 0 1045 117 48 0 chr13 14855783 14855928 -87017241 - AluSg/x SINE Alu -30 282 131 2230 93 3 17 chr13 14856499 14856800 -87016369 + AluSx SINE Alu 1 297 -15 2322 104 3 0 chr13 14857299 14857596 -87015573 - AluSq SINE Alu -15 298 1 363 284 158 77 chr13 14857702 14858012 -87015157 + L2 LINE L2 2937 3271 -1 376 261 17 25 chr13 14858314 14858433 -87014736 + MIR SINE MIR 44 161 -101 33 0 0 0 chr13 14859087 14859120 -87014049 + AT_rich Low_complexity Low_complexity 1 33 0 1009 206 0 0 chr13 14859602 14859767 -87013402 + FRAM SINE Alu 2 166 0 1877 101 0 45 chr13 14859811 14860097 -87013072 - AluSg SINE Alu 0 310 38 302 285 98 57 chr13 14860230 14860310 -87012859 + MIR SINE MIR 20 108 -154 2620 26 7 3 chr13 14860310 14860612 -87012557 - AluY SINE Alu -8 303 1 302 285 98 57 chr13 14860612 14860654 -87012515 + MIR SINE MIR 108 147 -115 578 135 79 0 chr13 14860974 14861063 -87012106 + MER46A DNA MER2_type 1 96 -140 * 634 116 12 1 chr13 14861053 14861159 -87012010 + Tigger4(Zombi) DNA MER2_type 130 2731 0 1028 130 76 5 chr13 14861327 14861512 -87011657 + L1MA8 LINE L1 6091 6288 -3 2632 43 10 0 chr13 14861516 14861819 -87011350 + AluY SINE Alu 1 306 -5 2443 58 0 32 chr13 14862185 14862494 -87010675 + AluY SINE Alu 1 299 -12 255 243 29 78 chr13 14864108 14864211 -87008958 - MIR3 SINE MIR -3 205 108 481 329 31 6 chr13 14864289 14864450 -87008719 + MIR SINE MIR 20 184 -78 280 247 38 35 chr13 14864473 14864663 -87008506 - MIR SINE MIR -6 256 14 410 295 147 69 chr13 14866111 14866731 -87006438 - L2 LINE L2 -2 3270 2584 181 305 253 0 chr13 14867203 14867298 -87005871 - MIR SINE MIR -118 144 26 319 291 82 18 chr13 14868301 14868411 -87004758 - MIR SINE MIR -44 218 102 495 260 151 80 chr13 14869847 14869949 -87003220 + Charlie8 DNA MER1_type 13 106 -497 2194 118 0 16 chr13 14869949 14870264 -87002905 + AluSg SINE Alu 1 310 0 495 260 151 80 chr13 14870264 14870635 -87002534 + Charlie8 DNA MER1_type 106 502 -101 379 327 101 18 chr13 14871260 14871477 -87001692 - L3 LINE CR1 -715 862 628 2268 71 7 10 chr13 14873554 14873848 -86999321 + AluY SINE Alu 1 293 -18 2320 85 0 23 chr13 14873943 14874249 -86998920 + AluSg SINE Alu 3 301 -9 21 36 0 0 chr13 14876339 14876367 -86996802 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr13 14877256 14877292 -86995877 + AT_rich Low_complexity Low_complexity 1 36 0 219 356 134 19 chr13 14877448 14877664 -86995505 - L2 LINE L2 -224 3048 2808 187 401 92 4 chr13 14877685 14877912 -86995257 - L2 LINE L2 -607 2707 2461 2092 123 36 3 chr13 14878458 14878759 -86994410 - AluSp SINE Alu -2 311 1 4918 115 65 56 chr13 14878759 14879059 -86994110 + Tigger1 DNA MER2_type 1552 1848 -570 2055 125 0 3 chr13 14879059 14879347 -86993822 - AluSx SINE Alu -25 287 1 4918 115 65 56 chr13 14879347 14879576 -86993593 + Tigger1 DNA MER2_type 1848 2073 -345 2042 118 4 4 chr13 14879576 14879897 -86993272 + AluSc SINE Alu 1 321 0 4918 115 65 56 chr13 14879897 14880224 -86992945 + Tigger1 DNA MER2_type 2073 2418 0 688 285 66 9 chr13 14880917 14881152 -86992017 - MIR SINE MIR -11 251 5 641 164 16 23 chr13 14882053 14882181 -86990988 + L1MB8 LINE L1 6051 6177 -1 216 158 0 0 chr13 14882952 14882990 -86990179 + T-rich Low_complexity Low_complexity 3 40 0 204 309 86 12 chr13 14883790 14883871 -86989298 - MER91C DNA MER1_type -38 102 16 1683 254 134 66 chr13 14885508 14886076 -86987093 - L2 LINE L2 0 3313 2785 636 109 89 0 chr13 14886076 14886177 -86986992 + L1MB4 LINE L1 6070 6179 -1 1683 254 134 66 chr13 14886177 14886607 -86986562 - L2 LINE L2 -528 2785 2234 401 342 70 0 chr13 14886698 14886856 -86986313 + MER5B DNA MER1_type 5 173 -5 322 267 22 11 chr13 14887500 14887590 -86985579 + MER5B DNA MER1_type 1 91 -87 934 247 123 148 chr13 14887641 14889297 -86983872 + L2 LINE L2 582 2191 -1123 533 112 0 0 chr13 14889297 14889386 -86983783 - L1PB1 LINE L1 0 6151 6063 934 247 123 148 chr13 14889386 14889553 -86983616 + L2 LINE L2 2191 2361 -953 619 268 83 31 chr13 14889582 14889810 -86983359 - MIR SINE MIR 0 262 23 256 264 78 47 chr13 14889894 14890023 -86983146 + L2 LINE L2 2513 2645 -669 218 242 345 6 chr13 14890183 14890348 -86982821 + L2 LINE L2 2926 3146 -167 289 250 53 0 chr13 14890429 14890505 -86982664 + MIR SINE MIR 108 187 -75 444 176 9 120 chr13 14891553 14891661 -86981508 + MER20 DNA MER1_type 6 101 -118 2205 113 0 7 chr13 14891877 14892178 -86980991 - AluSx SINE Alu -13 299 1 2514 63 0 0 chr13 14892293 14892593 -86980576 - AluY SINE Alu -11 300 1 403 301 0 0 chr13 14892608 14892711 -86980458 - MIR SINE MIR -2 260 158 575 287 118 35 chr13 14892898 14893716 -86979453 + L1MCc LINE L1 1267 2399 -4723 2346 107 3 0 chr13 14893716 14894025 -86979144 + AluSx SINE Alu 1 310 -2 575 287 118 35 chr13 14894025 14894111 -86979058 + L1MCc LINE L1 2399 2476 -4646 2197 125 10 0 chr13 14894293 14894597 -86978572 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr13 14894865 14894886 -86978283 + AT_rich Low_complexity Low_complexity 1 21 0 2221 105 0 0 chr13 14894886 14895171 -86977998 - AluSg SINE Alu -25 285 1 282 298 167 6 chr13 14895295 14895465 -86977704 + MIR SINE MIR 43 236 -26 2182 117 0 3 chr13 14896064 14896363 -86976806 - AluSq SINE Alu -15 298 1 226 304 130 35 chr13 14897043 14897273 -86975896 - MER102b DNA MER1_type 0 341 90 187 369 18 27 chr13 14897976 14898087 -86975082 + L2 LINE L2 2636 2745 -569 3923 156 35 16 chr13 14899392 14899665 -86973504 + L1MA9 LINE L1 5556 5822 -490 2097 105 0 14 chr13 14899665 14899975 -86973194 + AluSx SINE Alu 1 306 0 3923 156 35 16 chr13 14899975 14900410 -86972759 + L1MA9 LINE L1 5822 6279 -33 2250 105 0 19 chr13 14900421 14900736 -86972433 - AluSx SINE Alu -3 309 1 302 319 221 5 chr13 14901049 14901253 -86971916 + MIR SINE MIR 15 262 0 2102 100 3 7 chr13 14901632 14901932 -86971237 + AluSp SINE Alu 1 299 -14 543 244 103 0 chr13 14903201 14903357 -86969812 - MER3 DNA MER1_type -21 188 17 1382 159 189 27 chr13 14903859 14903979 -86969190 - Charlie1a DNA MER1_type -1306 1455 1356 2225 111 0 3 chr13 14903979 14904285 -86968884 + AluSx SINE Alu 1 305 -7 1382 159 189 27 chr13 14904285 14904567 -86968602 - Charlie1a DNA MER1_type -1405 1356 988 2802 209 108 20 chr13 14904602 14905337 -86967832 - Charlie1a DNA MER1_type -590 865 67 2102 117 10 3 chr13 14905503 14905801 -86967368 - AluSg SINE Alu -10 300 1 25 51 0 0 chr13 14905856 14905895 -86967274 + AT_rich Low_complexity Low_complexity 1 39 0 411 332 91 5 chr13 14906399 14906586 -86966583 + MIR SINE MIR 2 204 -58 262 283 178 49 chr13 14906885 14907189 -86965980 - L2 LINE L2 -95 3218 2876 202 330 58 58 chr13 14907411 14907672 -86965497 + L2 LINE L2 2809 3069 -203 * 211 139 139 0 chr13 14907656 14907699 -86965470 - L2 LINE L2 -97 3216 3168 280 361 41 8 chr13 14907906 14908055 -86965114 + MER5B DNA MER1_type 7 153 -25 230 382 39 10 chr13 14908051 14908153 -86965016 - L2 LINE L2 -648 2666 2562 * 281 282 64 0 chr13 14908281 14908359 -86964810 - L2 LINE L2 -2 3270 3188 22 0 0 0 chr13 14908809 14908831 -86964338 + AT_rich Low_complexity Low_complexity 1 22 0 1938 147 26 3 chr13 14909033 14909346 -86963823 - L1MC2 LINE L1 -158 6186 5867 2853 104 106 2 chr13 14909346 14909779 -86963390 - MER9 LTR ERVK 0 511 34 2723 118 53 9 chr13 14909785 14910205 -86962964 - L1MC2 LINE L1 -471 5873 5432 2502 64 0 13 chr13 14910205 14910518 -86962651 - AluY SINE Alu -2 309 1 2723 118 53 9 chr13 14910518 14910529 -86962640 - L1MC2 LINE L1 -912 5432 5423 574 319 169 22 chr13 14911103 14911416 -86961753 - L2 LINE L2 0 3272 2914 239 119 0 0 chr13 14911501 14911543 -86961626 + L1MA3 LINE L1 6264 6305 0 1316 195 110 11 chr13 14911700 14911972 -86961197 - AluJo SINE Alu -1 301 3 22 0 0 0 chr13 14912262 14912284 -86960885 + AT_rich Low_complexity Low_complexity 1 22 0 2528 56 13 0 chr13 14912603 14912905 -86960264 - AluY SINE Alu -5 306 1 1746 150 4 0 chr13 14914231 14914497 -86958672 + AluSq SINE Alu 1 267 -46 * 1927 93 4 12 chr13 14914495 14914753 -86958416 + AluY SINE Alu 41 296 -15 1208 153 4 75 chr13 14914834 14915088 -86958081 - AluJb SINE Alu -13 299 64 1792 135 4 0 chr13 14915298 14915564 -86957605 - AluSq SINE Alu -2 311 45 638 170 189 13 chr13 14915714 14915867 -86957302 + MER53 DNA DNA 10 189 0 180 0 0 0 chr13 14915942 14915962 -86957207 + (TG)n Simple_repeat Simple_repeat 2 21 0 1384 84 20 141 chr13 14916770 14917067 -86956102 - Tigger7 DNA MER2_type -2 2489 2229 * 4705 128 42 75 chr13 14917066 14917933 -86955236 - Tigger7 DNA MER2_type -1648 839 2 1165 141 130 0 chr13 14918153 14918345 -86954824 - AluSg/x SINE Alu -18 294 78 894 181 0 0 chr13 14918502 14918651 -86954518 + AluJb SINE Alu 152 300 -12 208 207 11 58 chr13 14918868 14918955 -86954214 + (TATG)n Simple_repeat Simple_repeat 3 85 0 4691 72 3 6 chr13 14920684 14921308 -86951861 - L1PA10 LINE L1 -11 6157 5536 1657 194 7 0 chr13 14921473 14921767 -86951402 + AluJo SINE Alu 12 307 -5 2260 113 0 3 chr13 14922130 14922432 -86950737 + AluSx SINE Alu 1 301 -11 1634 186 14 3 chr13 14922949 14923245 -86949924 - AluJo SINE Alu -9 303 5 2346 4 0 8 chr13 14928693 14928951 -86944218 + AluYa5 SINE Alu 41 296 -15 271 234 240 82 chr13 14928957 14929059 -86944110 + MIR SINE MIR 59 144 -118 2204 100 10 3 chr13 14929059 14929358 -86943811 + AluSx SINE Alu 1 301 -11 271 234 240 82 chr13 14929358 14929426 -86943743 + MIR SINE MIR 144 256 -6 1904 115 44 90 chr13 14929559 14929833 -86943336 - MER7A DNA MER2_type -2692 346 94 2293 97 0 10 chr13 14929833 14930132 -86943037 + AluSx SINE Alu 1 296 -16 1904 115 44 90 chr13 14930132 14930222 -86942947 - MER7A DNA MER2_type -2944 94 1 434 123 92 0 chr13 14931778 14931843 -86941326 - AluS SINE Alu -237 76 6 633 140 9 0 chr13 14931849 14931963 -86941206 - Charlie1a DNA MER1_type -26 1429 1315 2083 184 58 9 chr13 14931965 14932400 -86940769 - Charlie1a DNA MER1_type -617 838 383 371 287 59 22 chr13 14932403 14932539 -86940630 - Charlie1a DNA MER1_type -1314 141 1 1930 115 77 18 chr13 14932652 14932990 -86940179 - MER46B DNA MER2_type -1 235 3 851 233 197 48 chr13 14933011 14933513 -86939656 - L1MC4a LINE L1 -1487 6321 5745 21 0 0 0 chr13 14934080 14934101 -86939068 + AT_rich Low_complexity Low_complexity 1 21 0 254 324 29 36 chr13 14934105 14934244 -86938925 - MIR SINE MIR -39 223 86 3415 258 164 38 chr13 14934252 14935988 -86937181 + HAL1 LINE L1 12 1966 -541 2097 130 20 0 chr13 14936010 14936309 -86936860 + AluSx SINE Alu 1 305 -7 1070 256 146 35 chr13 14936309 14936623 -86936546 + HAL1 LINE L1 15 293 -2214 1882 129 71 0 chr13 14936623 14936903 -86936266 + AluSx SINE Alu 2 301 -11 1070 256 146 35 chr13 14936903 14937138 -86936031 + HAL1 LINE L1 293 625 -1882 582 262 63 23 chr13 14937164 14937385 -86935784 + HAL1 LINE L1 743 972 -1535 402 252 139 72 chr13 14937387 14937538 -86935631 + HAL1 LINE L1 1945 2084 -423 2439 73 0 13 chr13 14937538 14937853 -86935316 + AluY SINE Alu 1 311 0 402 252 139 72 chr13 14937853 14937929 -86935240 + HAL1 LINE L1 2084 2153 -354 4807 102 21 0 chr13 14937929 14938603 -86934566 + LTR12 LTR ERV1 1 688 0 402 252 139 72 chr13 14938603 14938790 -86934379 + HAL1 LINE L1 2153 2388 -119 2110 110 0 0 chr13 14938866 14939171 -86933998 - AluY SINE Alu 0 305 1 488 279 145 11 chr13 14940117 14940386 -86932783 + L2 LINE L2 1552 1856 -1458 841 279 39 23 chr13 14940393 14940651 -86932518 + L2 LINE L2 2630 2891 -423 350 230 222 16 chr13 14940665 14940791 -86932378 + L2 LINE L2 3161 3312 -1 198 323 211 26 chr13 14940877 14941679 -86931490 - L2 LINE L2 -923 2391 1442 2259 82 20 7 chr13 14942651 14942780 -86930389 + AluSq SINE Alu 1 127 -186 225 0 0 0 chr13 14942780 14942805 -86930364 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2259 82 20 7 chr13 14942805 14942969 -86930200 + AluSq SINE Alu 127 298 -15 2154 81 0 84 chr13 14943119 14943441 -86929728 - AluSp SINE Alu -18 295 1 967 246 20 36 chr13 14944112 14944360 -86928809 - MIR SINE MIR -2 260 17 2339 99 0 0 chr13 14945265 14945569 -86927600 + AluSq SINE Alu 1 304 -9 986 114 0 7 chr13 14945581 14945721 -86927448 + AluJb SINE Alu 1 139 -173 2102 125 0 3 chr13 14945722 14946011 -86927158 + AluSx SINE Alu 1 288 -24 2305 111 7 0 chr13 14946011 14946318 -86926851 + AluSx SINE Alu 1 309 -3 3545 263 159 20 chr13 14946903 14947441 -86925728 - L2 LINE L2 -8 3305 2843 2176 104 7 3 chr13 14947441 14947730 -86925439 - AluSx SINE Alu -22 290 1 3545 263 159 20 chr13 14947730 14948937 -86924232 - L2 LINE L2 -470 2843 1314 24 32 0 0 chr13 14948998 14949029 -86924140 + AT_rich Low_complexity Low_complexity 1 31 0 1872 155 7 23 chr13 14949092 14949402 -86923767 - AluJo SINE Alu -6 306 2 1422 266 193 29 chr13 14951311 14952151 -86921018 - HAL1 LINE L1 -1 2506 1529 310 161 0 0 chr13 14952189 14952245 -86920924 - Alu SINE Alu 0 302 247 747 187 0 0 chr13 14952250 14952373 -86920796 - FLAM_C SINE Alu -20 123 1 2281 108 10 0 chr13 14952442 14952749 -86920420 - AluSq SINE Alu -3 310 1 677 216 30 96 chr13 14952765 14953099 -86920070 - HAL1 LINE L1 -1096 1411 1100 1258 257 90 55 chr13 14953460 14953611 -86919558 + L1MC5 LINE L1 6456 6600 -1361 2169 131 0 0 chr13 14953611 14953908 -86919261 + AluSx SINE Alu 1 297 -15 1258 257 90 55 chr13 14953908 14954227 -86918942 + L1MC5 LINE L1 6600 6906 -1055 2109 116 0 7 chr13 14954227 14954520 -86918649 + AluSx SINE Alu 6 296 -16 1258 257 90 55 chr13 14954520 14954593 -86918576 + L1MC5 LINE L1 6906 6975 -986 1577 181 31 20 chr13 14954593 14954886 -86918283 + AluJb SINE Alu 3 298 -14 1258 257 90 55 chr13 14954886 14955045 -86918124 + L1MC5 LINE L1 6975 7187 -774 2305 87 0 7 chr13 14955068 14955366 -86917803 - AluSg SINE Alu -1 309 14 528 259 193 102 chr13 14955392 14955854 -86917315 - HAL1 LINE L1 -1383 1124 705 2349 77 3 10 chr13 14955854 14956166 -86917003 - AluSg SINE Alu 0 310 1 528 259 193 102 chr13 14956166 14956486 -86916683 - HAL1 LINE L1 -1802 705 271 524 238 72 66 chr13 14956531 14956631 -86916538 + MIR SINE MIR 78 181 -81 2124 106 0 0 chr13 14956631 14956932 -86916237 - AluSx SINE Alu -11 301 1 524 238 72 66 chr13 14956932 14957012 -86916157 + MIR SINE MIR 181 259 -3 301 243 37 65 chr13 14957029 14957136 -86916033 - HAL1 LINE L1 -2302 205 102 1893 124 57 0 chr13 14957669 14957951 -86915218 - AluSq SINE Alu -15 298 1 6710 119 29 22 chr13 14958775 14959380 -86913789 - Tigger1 DNA MER2_type 0 2418 1818 2043 131 56 14 chr13 14959380 14959740 -86913429 - THE1C LTR MaLR 0 375 1 8360 137 27 75 chr13 14959740 14960055 -86913114 - THE1C-int LTR MaLR 0 1580 1251 1661 117 4 4 chr13 14960055 14960286 -86912883 - AluSg SINE Alu -16 294 64 2173 139 0 0 chr13 14960286 14960594 -86912575 + AluSg SINE Alu 2 310 0 8360 137 27 75 chr13 14960594 14961934 -86911235 - THE1C-int LTR MaLR -327 1253 4 1960 140 59 14 chr13 14961937 14962294 -86910875 - THE1C LTR MaLR 0 375 3 6710 119 29 22 chr13 14962294 14962618 -86910551 - Tigger1 DNA MER2_type -601 1817 1474 2426 74 3 0 chr13 14962618 14962917 -86910252 - AluSp SINE Alu -12 301 2 6710 119 29 22 chr13 14962917 14963052 -86910117 - Tigger1 DNA MER2_type -944 1474 1341 769 169 32 45 chr13 14963046 14963200 -86909969 - Tigger1 DNA MER2_type -2265 153 2 * 2045 139 7 3 chr13 14963299 14963601 -86909568 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr13 14964061 14964084 -86909085 + AT_rich Low_complexity Low_complexity 1 23 0 2260 98 7 0 chr13 14964368 14964665 -86908504 + AluSq SINE Alu 1 299 -14 204 304 191 24 chr13 14965241 14965409 -86907760 + MIR3 SINE MIR 10 205 -3 183 129 0 0 chr13 14965729 14965760 -86907409 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 600 265 33 38 chr13 14965896 14966107 -86907062 + MIR SINE MIR 34 243 -19 2338 105 0 0 chr13 14967592 14967897 -86905272 - AluY SINE Alu -6 305 1 5709 246 127 71 chr13 14968221 14969177 -86903992 - L2 LINE L2 -1 3312 2411 1174 53 0 0 chr13 14969177 14969309 -86903860 - AluY SINE Alu -179 132 1 5709 246 127 71 chr13 14969309 14970137 -86903032 - L2 LINE L2 -902 2411 1630 2221 78 38 0 chr13 14970137 14970430 -86902739 + AluY SINE Alu 1 304 -7 5709 246 127 71 chr13 14970430 14971510 -86901659 - L2 LINE L2 -1683 1630 154 247 91 0 0 chr13 14971529 14971573 -86901596 - L1MA2 LINE L1 0 6304 6261 1824 126 0 0 chr13 14973227 14973481 -86899688 + AluSx SINE Alu 44 297 -15 1788 169 36 3 chr13 14973889 14974209 -86898960 - MLT1C LTR MaLR 0 654 126 4087 175 49 54 chr13 14974209 14975168 -86898001 + LTR13 LTR ERVK 1 954 0 1788 169 36 3 chr13 14975168 14975182 -86897987 - MLT1C LTR MaLR -528 126 114 1863 158 3 3 chr13 14975182 14975479 -86897690 - AluSx SINE Alu -14 298 2 1428 118 102 12 chr13 14975483 14975728 -86897441 + MER47A DNA MER2_type 30 296 -70 2454 238 51 41 chr13 14975794 14976727 -86896442 - L1MDa LINE L1 -3830 2710 1769 320 163 0 0 chr13 14976735 14976784 -86896385 + MER47A DNA MER2_type 307 355 -11 242 234 0 0 chr13 14976788 14976835 -86896334 - MLT1C LTR MaLR -374 93 47 182 322 35 23 chr13 14977211 14977298 -86895871 + L2 LINE L2 2699 2786 -528 672 151 72 50 chr13 14977373 14977512 -86895657 + FLAM_C SINE Alu 2 143 0 490 286 118 0 chr13 14977927 14978105 -86895064 - MIR SINE MIR -61 201 3 753 261 207 14 chr13 14978282 14978635 -86894534 - LTR16A LTR ERVL -14 436 16 580 124 10 15 chr13 14979467 14979669 -86893500 + AluSx SINE Alu 2 299 -3 3845 224 82 39 chr13 14979676 14980821 -86892348 - L1MC4a LINE L1 0 7808 6615 2217 224 58 61 chr13 14980818 14981573 -86891596 - L1MC4a LINE L1 -1594 6214 5462 * 628 248 164 9 chr13 14982484 14982710 -86890459 - MIR SINE MIR 0 262 2 26 0 0 0 chr13 14982816 14982842 -86890327 + AT_rich Low_complexity Low_complexity 1 26 0 2190 125 0 6 chr13 14983024 14983335 -86889834 - AluSx SINE Alu 0 312 4 389 218 13 0 chr13 14983436 14983514 -86889655 + MER116 DNA Mariner 1 79 -1 707 163 70 52 chr13 14984505 14984562 -86888607 - MIR SINE MIR -48 214 159 1186 176 10 19 chr13 14984562 14984767 -86888402 - MER6B DNA MER2_type -3 207 5 707 163 70 52 chr13 14984767 14984881 -86888288 - MIR SINE MIR -103 159 40 937 134 0 8 chr13 14986083 14986217 -86886952 + FLAM_C SINE Alu 1 133 0 2192 120 0 3 chr13 14986851 14987150 -86886019 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 14987658 14987679 -86885490 + AT_rich Low_complexity Low_complexity 1 21 0 495 272 203 20 chr13 14989265 14989511 -86883658 - MARNA DNA Mariner -263 323 33 239 318 162 13 chr13 14990663 14990817 -86882352 - MER5A DNA MER1_type -7 182 6 2065 135 0 0 chr13 14992292 14992595 -86880574 + AluSx SINE Alu 1 303 -9 2553 48 3 26 chr13 14992953 14993266 -86879903 - AluY SINE Alu -5 306 1 2311 93 3 10 chr13 14993514 14993827 -86879342 - AluSq SINE Alu -2 311 1 294 322 128 13 chr13 14996375 14996524 -86876645 + L3 LINE CR1 353 518 -1059 226 364 127 9 chr13 14996558 14996668 -86876501 - L2 LINE L2 -11 3302 3180 558 313 28 36 chr13 14996928 14997177 -86875992 + L3 LINE CR1 1055 1301 -276 419 265 175 23 chr13 14997177 14997539 -86875630 - MLT1H LTR MaLR -90 459 1 302 267 114 9 chr13 14998929 14999034 -86874135 - L1MC5 LINE L1 -36 7925 7810 293 286 0 0 chr13 14999126 14999217 -86873952 - L1MC5 LINE L1 -396 7565 7475 534 281 67 30 chr13 14999241 14999399 -86873770 - L1MC4 LINE L1 0 8042 7868 2134 106 3 47 chr13 14999399 14999720 -86873449 + AluSx SINE Alu 1 307 -5 534 281 67 30 chr13 14999720 14999828 -86873341 - L1MC4 LINE L1 -174 7868 7766 23 0 0 0 chr13 14999946 14999969 -86873200 + AT_rich Low_complexity Low_complexity 1 23 0 2163 106 0 7 chr13 14999988 15000280 -86872889 - AluSx SINE Alu -22 290 1 26 0 0 0 chr13 15000290 15000316 -86872853 + AT_rich Low_complexity Low_complexity 1 26 0 737 278 66 28 chr13 15000425 15000745 -86872424 - L1MC4 LINE L1 -495 7547 7216 312 227 86 121 chr13 15000789 15000931 -86872238 - L1ME4a LINE L1 -89 6032 5887 2456 86 0 0 chr13 15000931 15001234 -86871935 - AluSx SINE Alu -9 303 1 312 227 86 121 chr13 15001234 15001430 -86871739 - L1ME4a LINE L1 -234 5887 5706 349 366 22 22 chr13 15001709 15001892 -86871277 - MIR SINE MIR -33 229 47 287 320 33 16 chr13 15001903 15002025 -86871144 - HAL1b LINE L1 -750 598 475 385 276 73 73 chr13 15002046 15002321 -86870848 - MLT1J LTR MaLR -1 510 236 22 0 0 0 chr13 15002439 15002461 -86870708 + AT_rich Low_complexity Low_complexity 1 22 0 578 281 29 29 chr13 15002921 15003131 -86870038 + L2 LINE L2 3104 3313 0 527 254 216 38 chr13 15003233 15003446 -86869723 - MIR SINE MIR -4 258 8 239 226 135 23 chr13 15003458 15003591 -86869578 - L1ME LINE L1 -375 5787 5640 592 252 7 7 chr13 15003678 15003813 -86869356 + L2 LINE L2 3179 3313 0 2227 90 0 0 chr13 15003888 15004167 -86869002 - AluSg SINE Alu -31 279 1 2841 67 22 3 chr13 15004268 15004624 -86868545 + THE1C LTR MaLR 3 365 -10 11437 98 41 7 chr13 15004624 15006150 -86867019 + THE1C-int LTR MaLR 1 1578 -2 2555 71 22 41 chr13 15006150 15006290 -86866879 + THE1C LTR MaLR 19 160 -215 2099 118 13 35 chr13 15006290 15006603 -86866566 - AluSx SINE Alu -6 306 1 2555 71 22 41 chr13 15006603 15006826 -86866343 + THE1C LTR MaLR 160 375 0 2417 87 0 6 chr13 15007716 15008027 -86865142 - AluSq SINE Alu -4 309 1 364 233 107 79 chr13 15008152 15008367 -86864802 - L2 LINE L2 -4 3309 3089 261 310 181 0 chr13 15008591 15008707 -86864462 + MIR SINE MIR 126 262 0 1665 170 24 40 chr13 15010595 15010971 -86862198 + L1MB4 LINE L1 5777 6146 -34 431 57 0 0 chr13 15011604 15011657 -86861512 - Alu SINE Alu -260 58 6 227 237 34 0 chr13 15011661 15011720 -86861449 - L1ME LINE L1 -454 5667 5607 392 190 110 0 chr13 15012069 15012169 -86861000 - L1ME4a LINE L1 -6 6115 6005 505 263 108 17 chr13 15012599 15012773 -86860396 - MIR SINE MIR -62 146 8 406 319 18 35 chr13 15012810 15012979 -86860190 - MIR3 SINE MIR -23 185 20 312 301 11 0 chr13 15013068 15013161 -86860008 - MIR3 SINE MIR -1 207 114 226 273 260 0 chr13 15013769 15013846 -86859323 - L2 LINE L2 -20 3293 3197 189 74 0 0 chr13 15014785 15014812 -86858357 + (CTGGGG)n Simple_repeat Simple_repeat 6 32 0 23 0 0 0 chr13 15015020 15015043 -86858126 + GC_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr13 15015043 15015068 -86858101 + (CTG)n Simple_repeat Simple_repeat 1 25 0 1268 169 115 17 chr13 15016554 15016637 -86856532 + MER33 DNA MER1_type 1 74 -2511 1931 158 0 3 chr13 15016637 15016940 -86856229 + AluJo SINE Alu 1 302 -10 1268 169 115 17 chr13 15016940 15017151 -86856018 + MER33 DNA MER1_type 74 324 0 238 325 78 12 chr13 15017354 15017520 -86855649 - L2 LINE L2 -1148 2166 1990 210 273 83 58 chr13 15017649 15017770 -86855399 + L2 LINE L2 3169 3292 -21 2345 78 3 0 chr13 15017844 15018159 -86855010 + AluSp SINE Alu 1 316 0 821 215 58 50 chr13 15018834 15019076 -86854093 - MER46C DNA MER2_type 0 338 95 1726 108 0 4 chr13 15019087 15019319 -86853850 - AluJb SINE Alu -81 231 1 835 117 105 146 chr13 15019358 15019605 -86853564 + L1MB3 LINE L1 5942 6178 -5 303 226 0 0 chr13 15019616 15019678 -86853491 - MER46C DNA MER2_type -274 64 3 2080 98 47 17 chr13 15020382 15020678 -86852491 + AluSx SINE Alu 1 305 -7 2239 101 9 22 chr13 15020678 15020995 -86852174 + AluSq SINE Alu 1 313 0 2062 110 3 67 chr13 15021101 15021429 -86851740 - AluSx SINE Alu -5 307 1 277 308 75 25 chr13 15021490 15021610 -86851559 - MIR SINE MIR -66 142 17 335 259 121 26 chr13 15022180 15022274 -86850895 + L2 LINE L2 3187 3295 -18 2222 110 0 0 chr13 15022274 15022565 -86850604 - AluSx SINE Alu -21 291 1 335 259 121 26 chr13 15022565 15022586 -86850583 + L2 LINE L2 3295 3313 0 28 29 0 0 chr13 15023441 15023476 -86849693 + AT_rich Low_complexity Low_complexity 1 35 0 2192 114 13 0 chr13 15023548 15023871 -86849298 + AluSx SINE Alu 10 336 0 2116 116 0 7 chr13 15023889 15024219 -86848950 - AluSx SINE Alu 0 328 1 1398 102 38 42 chr13 15025031 15025267 -86847902 - L1MA6 LINE L1 -4 6296 6062 1345 91 5 0 chr13 15025269 15025455 -86847714 + L1MA6 LINE L1 5791 5977 -323 1226 119 0 0 chr13 15025489 15025657 -86847512 + AluSp SINE Alu 137 304 -9 186 43 0 0 chr13 15025658 15025681 -86847488 + (CA)n Simple_repeat Simple_repeat 2 24 0 256 270 124 11 chr13 15026510 15026599 -86846570 - Charlie4 DNA MER1_type 0 1961 1863 2226 105 0 40 chr13 15026768 15027091 -86846078 + AluSg SINE Alu 1 310 0 2168 101 21 0 chr13 15027512 15027798 -86845371 - AluSx SINE Alu -20 292 1 2089 125 0 16 chr13 15027887 15028190 -86844979 - AluSx SINE Alu -14 298 1 2326 88 0 10 chr13 15028442 15028777 -86844392 + AluSq SINE Alu 6 313 0 2195 38 27 0 chr13 15028789 15028916 -86844253 + AluY SINE Alu 1 123 -188 333 0 0 0 chr13 15028916 15028953 -86844216 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2195 38 27 0 chr13 15028953 15029088 -86844081 + AluY SINE Alu 123 270 -41 2144 117 7 7 chr13 15031280 15031589 -86841580 - AluSq SINE Alu -4 309 1 2008 139 3 55 chr13 15031765 15031990 -86841179 - MER7A DNA MER2_type -2712 326 91 1888 136 0 7 chr13 15031990 15032269 -86840900 + AluSx SINE Alu 1 277 -35 270 0 0 0 chr13 15032274 15032304 -86840865 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2008 139 3 55 chr13 15032304 15032417 -86840752 - MER7A DNA MER2_type -2951 87 2 450 215 102 96 chr13 15032611 15032788 -86840381 + MER20B DNA MER1_type 2 179 -604 708 261 84 31 chr13 15033816 15034042 -86839127 - MIR SINE MIR -23 239 2 607 299 33 9 chr13 15034440 15034654 -86838515 - L2 LINE L2 -745 2569 2351 279 282 0 14 chr13 15036671 15036742 -86836427 + MIR SINE MIR 193 262 0 446 264 208 11 chr13 15036973 15037348 -86835821 + L1M4 LINE L1 2518 2966 -3180 2486 64 0 0 chr13 15037352 15037647 -86835522 - AluY SINE Alu -16 295 1 1109 142 12 0 chr13 15037647 15037816 -86835353 - AluJb SINE Alu -6 306 136 195 115 77 0 chr13 15037818 15037870 -86835299 + CT-rich Low_complexity Low_complexity 5 60 0 276 30 0 0 chr13 15037893 15037926 -86835243 + (TC)n Simple_repeat Simple_repeat 2 34 0 771 135 18 0 chr13 15037926 15038037 -86835132 - AluJb SINE Alu -198 114 2 237 265 81 52 chr13 15038037 15038173 -86834996 + L1M4 LINE L1 2981 3120 -3026 788 184 0 37 chr13 15038174 15038310 -86834859 + FLAM_C SINE Alu 2 132 -1 255 230 91 18 chr13 15038352 15038517 -86834652 + L1M4 LINE L1 3219 3395 -2751 1455 148 68 34 chr13 15038572 15038835 -86834334 - AluJo SINE Alu -20 292 21 925 259 58 99 chr13 15038850 15039066 -86834103 + L1M4 LINE L1 3410 3633 -2513 2376 89 3 0 chr13 15039066 15039370 -86833799 - AluSp SINE Alu -8 305 1 925 259 58 99 chr13 15039370 15039979 -86833190 + L1M4 LINE L1 3633 4201 -1945 1953 127 14 7 chr13 15039986 15040278 -86832891 + AluSx SINE Alu 1 294 -18 4426 227 69 37 chr13 15040290 15040487 -86832682 + L1M4 LINE L1 2 191 -6351 973 202 12 17 chr13 15040487 15040660 -86832509 - FAM SINE Alu -3 172 1 4426 227 69 37 chr13 15040660 15041718 -86831451 + L1M4 LINE L1 191 1298 -5244 * 15071 166 31 45 chr13 15041717 15043864 -86829305 + L1MA4A LINE L1 1 2178 -4827 1982 148 0 10 chr13 15043864 15044169 -86829000 + AluSx SINE Alu 2 303 -9 210 105 0 0 chr13 15044176 15044214 -86828955 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 15071 166 31 45 chr13 15044214 15045044 -86828125 + L1MA4A LINE L1 2184 3025 -3980 2245 81 0 7 chr13 15045044 15045374 -86827795 - AluY SINE Alu 0 328 1 15071 166 31 45 chr13 15045374 15048625 -86824544 + L1MA4A LINE L1 3025 6322 -683 1869 154 3 3 chr13 15048625 15048911 -86824258 - AluJo SINE Alu -26 286 1 15071 166 31 45 chr13 15048911 15049754 -86823415 + L1MA4A LINE L1 6322 6986 -19 1923 128 3 51 chr13 15049754 15050067 -86823102 + AluSg SINE Alu 1 298 -12 1051 193 28 46 chr13 15050086 15050371 -86822798 + L1M4 LINE L1 1264 1543 -4999 2352 93 0 0 chr13 15050388 15050688 -86822481 + AluSx SINE Alu 1 300 -12 1417 219 161 49 chr13 15050693 15051309 -86821860 + L1M4 LINE L1 1760 2444 -4202 414 272 69 42 chr13 15051521 15051738 -86821431 + LTR33A LTR ERVL 299 521 -2 665 295 33 35 chr13 15051738 15051968 -86821201 + L1ME3A LINE L1 5263 5509 -655 2101 135 0 0 chr13 15051968 15052271 -86820898 - AluSg SINE Alu -7 303 1 665 295 33 35 chr13 15052271 15052407 -86820762 + L1ME3A LINE L1 5509 5644 -520 378 284 0 47 chr13 15052457 15052605 -86820564 + MER112 DNA MER1_type 2 142 -118 2229 125 0 0 chr13 15052654 15052958 -86820211 - AluSg SINE Alu -6 304 1 385 272 0 0 chr13 15052994 15053086 -86820083 + MER112 DNA MER1_type 168 259 -1 659 265 53 38 chr13 15053086 15053291 -86819878 + L1ME3A LINE L1 5676 5890 -272 1694 143 111 7 chr13 15053291 15053570 -86819599 + AluSg SINE Alu 1 308 -2 659 265 53 38 chr13 15053570 15053633 -86819536 + L1ME3A LINE L1 5890 5951 -211 226 302 103 69 chr13 15053687 15053803 -86819366 + L1ME3A LINE L1 5963 6082 -88 283 310 216 0 chr13 15053905 15054076 -86819093 + L3 LINE CR1 320 527 -1050 384 187 53 0 chr13 15054077 15054152 -86819017 - MER116 DNA Mariner 0 80 2 2137 104 0 63 chr13 15054268 15054584 -86818585 - AluSx SINE Alu -16 296 1 2060 138 0 3 chr13 15054713 15055017 -86818152 + AluSx SINE Alu 1 303 -9 186 349 111 24 chr13 15055029 15055370 -86817799 - L2 LINE L2 -962 2352 1982 198 152 87 22 chr13 15055372 15055418 -86817751 - L2 LINE L2 -4 3309 3261 320 274 124 26 chr13 15055446 15055599 -86817570 + L3 LINE CR1 617 784 -793 3127 120 127 72 chr13 15055602 15056184 -86816985 + LTR18B LTR ERVL 1 614 0 1410 211 10 30 chr13 15056197 15056496 -86816673 + HERVL18 LTR ERVL 5 297 -5750 785 188 17 1 chr13 15056490 15056724 -86816445 + HERVL18 LTR ERVL 492 763 -5284 * 303 223 0 53 chr13 15056730 15056824 -86816345 + HERVL18 LTR ERVL 874 962 -5085 1068 214 6 10 chr13 15056824 15057173 -86815996 + HERVL18 LTR ERVL 1401 1810 -4237 425 164 31 13 chr13 15057172 15057376 -86815793 + HERVL18 LTR ERVL 2119 2452 -3595 * 4622 176 29 3 chr13 15057373 15058127 -86815042 + HERVL18 LTR ERVL 2718 3491 -2556 3176 127 88 67 chr13 15058309 15058910 -86814259 + LTR18B LTR ERVL 1 614 0 627 189 63 47 chr13 15058949 15059140 -86814029 + L1MC5 LINE L1 7271 7464 -497 505 91 39 13 chr13 15059205 15059282 -86813887 + L1MC2 LINE L1 6251 6329 -15 260 315 141 13 chr13 15059619 15059768 -86813401 - MIR3 SINE MIR -35 173 6 823 137 111 80 chr13 15059851 15060005 -86813164 + MER33 DNA MER1_type 3 168 -2417 2345 94 0 3 chr13 15060005 15060303 -86812866 + AluSx SINE Alu 1 297 -15 823 137 111 80 chr13 15060303 15060374 -86812795 + MER33 DNA MER1_type 168 235 -89 428 202 109 118 chr13 15060380 15060468 -86812701 + L1MC4 LINE L1 7620 7707 -335 2278 172 38 81 chr13 15060468 15060996 -86812173 - MLT1D LTR MaLR 0 505 1 428 202 109 118 chr13 15060996 15061273 -86811896 + L1MC4 LINE L1 7707 7982 -60 1982 125 0 17 chr13 15061414 15061702 -86811467 + AluSx SINE Alu 1 283 -29 2918 148 107 53 chr13 15062241 15062822 -86810347 - LTR9 LTR ERV1 0 612 1 492 323 39 22 chr13 15063503 15063732 -86809437 + L1MEd LINE L1 523 755 -5364 2243 123 0 16 chr13 15065854 15066162 -86807007 + AluSq SINE Alu 1 303 -10 2239 85 0 47 chr13 15066270 15066587 -86806582 - AluY SINE Alu -9 302 1 314 310 61 5 chr13 15066666 15066879 -86806290 + L1MEd LINE L1 924 1148 -4971 926 286 40 28 chr13 15066914 15067410 -86805759 + L1MEd LINE L1 1164 1665 -4645 187 284 149 14 chr13 15067728 15067802 -86805367 - MIR SINE MIR -104 158 75 2291 122 0 0 chr13 15067844 15068156 -86805013 + AluSx SINE Alu 1 312 0 206 302 19 0 chr13 15069173 15069226 -86803943 + L2 LINE L2 3215 3268 -4 1697 142 49 59 chr13 15069384 15069672 -86803497 - AluSx SINE Alu -27 285 1 22 70 0 0 chr13 15070664 15070707 -86802462 + AT_rich Low_complexity Low_complexity 1 43 0 1372 100 5 5 chr13 15070831 15071021 -86802148 + AluSp SINE Alu 124 313 0 1532 176 0 69 chr13 15071032 15071367 -86801802 + AluJb SINE Alu 1 312 0 2231 106 0 3 chr13 15071492 15071793 -86801376 - AluSq SINE Alu -13 300 1 1845 221 50 38 chr13 15072324 15072795 -86800374 + L1M4 LINE L1 3507 3947 -2199 1573 193 0 4 chr13 15072795 15073064 -86800105 + AluJb SINE Alu 1 268 -44 1845 221 50 38 chr13 15073064 15073399 -86799770 + L1M4 LINE L1 3947 4277 -1869 2144 120 0 0 chr13 15073402 15073723 -86799446 + AluSx SINE Alu 1 321 0 2134 133 0 0 chr13 15073726 15074034 -86799135 + AluY SINE Alu 1 308 -3 661 192 0 0 chr13 15074054 15074174 -86798995 + FLAM_A SINE Alu 1 120 -13 1813 153 30 14 chr13 15074210 15074505 -86798664 + AluJb SINE Alu 11 310 -2 1244 102 0 0 chr13 15074534 15074700 -86798469 + AluSg/x SINE Alu 135 300 -10 1075 138 12 6 chr13 15074874 15075034 -86798135 - AluSp SINE Alu -20 293 133 326 304 188 14 chr13 15075036 15075174 -86797995 - MIR SINE MIR -97 165 4 2105 141 60 5 chr13 15075187 15075569 -86797600 + L1PA16 LINE L1 5764 6166 0 22 35 0 0 chr13 15075569 15075598 -86797571 + AT_rich Low_complexity Low_complexity 1 29 0 257 232 0 0 chr13 15075620 15075676 -86797493 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 990 149 0 0 chr13 15075940 15076102 -86797067 + AluSg/x SINE Alu 143 304 0 202 178 79 160 chr13 15076995 15077265 -86795904 + L2 LINE L2 3019 3311 -2 210 37 0 0 chr13 15077299 15077326 -86795843 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2231 92 0 0 chr13 15077328 15077611 -86795558 - AluSq SINE Alu -30 283 1 1647 108 46 23 chr13 15077670 15077930 -86795239 - MER1B DNA MER1_type -73 266 1 370 59 20 59 chr13 15078543 15078645 -86794524 + (TA)n Simple_repeat Simple_repeat 1 98 0 2191 79 3 7 chr13 15078645 15078935 -86794234 - AluSc SINE Alu -20 289 1 1240 75 0 0 chr13 15079282 15079443 -86793726 - AluY SINE Alu 0 311 151 21 36 0 0 chr13 15079821 15079849 -86793320 + AT_rich Low_complexity Low_complexity 1 28 0 2260 98 0 19 chr13 15079921 15080237 -86792932 - AluSx SINE Alu -2 310 1 496 298 53 58 chr13 15080876 15081003 -86792166 + MIR3 SINE MIR 16 143 -65 1985 123 3 41 chr13 15081003 15081319 -86791850 + AluSx SINE Alu 1 304 -8 496 298 53 58 chr13 15081319 15081379 -86791790 + MIR3 SINE MIR 143 202 -6 2253 44 0 11 chr13 15081494 15081764 -86791405 + AluY SINE Alu 1 267 -44 187 208 97 56 chr13 15082562 15082634 -86790535 - MIR3 SINE MIR -133 75 1 2017 141 3 0 chr13 15082703 15082994 -86790175 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 15083208 15083231 -86789938 + AT_rich Low_complexity Low_complexity 1 23 0 557 191 203 42 chr13 15084880 15084998 -86788171 + MER5C DNA MER1_type 1 99 -225 1673 175 52 7 chr13 15084998 15085284 -86787885 - AluSg SINE Alu -11 299 1 557 191 203 42 chr13 15085284 15085338 -86787831 + MER5C DNA MER1_type 99 143 -181 182 36 0 36 chr13 15085347 15085375 -86787794 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2035 122 18 7 chr13 15085375 15085651 -86787518 - AluSx SINE Alu -28 284 3 557 191 203 42 chr13 15085651 15085713 -86787456 + MER5C DNA MER1_type 143 274 -50 1902 145 48 0 chr13 15085732 15086022 -86787147 + AluSx SINE Alu 1 304 -8 301 345 78 14 chr13 15086056 15086198 -86786971 + L2 LINE L2 2903 3053 -219 1477 172 79 29 chr13 15087462 15087741 -86785428 + AluJo SINE Alu 3 295 -17 2046 140 3 13 chr13 15087871 15088179 -86784990 - AluSx SINE Alu -7 305 1 2281 64 0 3 chr13 15088545 15088827 -86784342 + AluY SINE Alu 1 281 -30 2091 99 3 46 chr13 15089074 15089376 -86783793 - AluSx SINE Alu -10 302 14 244 274 36 48 chr13 15089797 15089881 -86783288 - L3 LINE CR1 -114 1463 1381 2220 123 0 0 chr13 15089903 15090211 -86782958 + AluSx SINE Alu 1 308 -4 231 330 148 0 chr13 15090335 15090423 -86782746 - L2 LINE L2 -4 3268 3168 614 158 12 33 chr13 15090777 15091036 -86782133 + AluJo SINE Alu 1 303 -9 2030 173 35 5 chr13 15091247 15091623 -86781546 - MLT1B LTR MaLR -1 389 3 4816 186 53 77 chr13 15091626 15093030 -86780139 - MLT1B-int LTR MaLR -1 1370 1 1837 144 38 12 chr13 15093032 15093373 -86779796 - MLT1B LTR MaLR -2 388 39 309 315 73 18 chr13 15093459 15093624 -86779545 - L2 LINE L2 0 3313 3140 392 380 80 9 chr13 15093728 15093954 -86779215 - L2 LINE L2 -384 2930 2689 374 269 39 10 chr13 15093954 15094058 -86779111 + L1ME3A LINE L1 6000 6106 -64 586 307 131 13 chr13 15094059 15094372 -86778797 - L2 LINE L2 -737 2577 2228 360 274 68 8 chr13 15094403 15094520 -86778649 - L2 LINE L2 -6 3307 3184 550 315 49 36 chr13 15094566 15094896 -86778273 - L2 LINE L2 -278 3035 2633 709 293 174 26 chr13 15094905 15095481 -86777688 - L2 LINE L2 -1112 2202 1542 1068 156 106 28 chr13 15096198 15096416 -86776753 + MER46A DNA MER2_type 1 235 -1 35 0 0 0 chr13 15097349 15097384 -86775785 + AT_rich Low_complexity Low_complexity 1 35 0 2254 104 7 0 chr13 15097512 15097811 -86775358 - AluSx SINE Alu -11 301 1 185 372 58 0 chr13 15098057 15098143 -86775026 + MIR SINE MIR 49 139 -123 2414 63 0 3 chr13 15099764 15100063 -86773106 + AluY SINE Alu 1 298 -13 21 0 0 0 chr13 15100598 15100619 -86772550 + AT_rich Low_complexity Low_complexity 1 21 0 517 194 29 10 chr13 15101551 15101654 -86771515 + FLAM_A SINE Alu 12 116 -26 2265 95 0 20 chr13 15101866 15102171 -86770998 + AluSx SINE Alu 1 299 -13 1302 188 51 51 chr13 15102182 15102458 -86770711 + AluJo SINE Alu 6 281 -31 2160 112 0 3 chr13 15102756 15103050 -86770119 - AluSx SINE Alu -19 293 1 22 70 0 0 chr13 15104614 15104657 -86768512 + AT_rich Low_complexity Low_complexity 1 43 0 305 191 25 134 chr13 15105448 15105605 -86767564 + L1ME3A LINE L1 5823 5962 -208 434 285 40 45 chr13 15105692 15105892 -86767277 + L1ME3A LINE L1 5966 6164 -6 1063 159 35 89 chr13 15106182 15106385 -86766784 + AluJb SINE Alu 46 234 -78 2004 128 24 3 chr13 15106385 15106683 -86766486 + AluSq SINE Alu 1 304 -9 1063 159 35 89 chr13 15106683 15106736 -86766433 + AluJb SINE Alu 234 288 -24 25 31 0 0 chr13 15106857 15106889 -86766280 + AT_rich Low_complexity Low_complexity 1 32 0 522 143 0 19 chr13 15107219 15107324 -86765845 + L1MB8 LINE L1 6071 6173 -5 2306 95 0 16 chr13 15107385 15107700 -86765469 + AluY SINE Alu 1 310 -1 591 263 38 8 chr13 15107879 15108115 -86765054 + MER46C DNA MER2_type 81 323 -15 2166 110 0 0 chr13 15108706 15109005 -86764164 + AluSx SINE Alu 1 299 -13 30 0 0 0 chr13 15109286 15109316 -86763853 + AT_rich Low_complexity Low_complexity 1 30 0 1986 152 3 3 chr13 15110121 15110418 -86762751 + AluSx SINE Alu 1 297 -15 2132 124 3 0 chr13 15110418 15110716 -86762453 + AluSg SINE Alu 1 299 -11 1557 91 17 4 chr13 15110731 15110962 -86762207 + L1PB1 LINE L1 5896 6129 -22 2056 131 0 0 chr13 15111771 15112076 -86761093 - AluJb SINE Alu 0 305 1 32 0 0 0 chr13 15112274 15112306 -86760863 + AT_rich Low_complexity Low_complexity 1 32 0 253 200 0 0 chr13 15112508 15112553 -86760616 + AluSc SINE Alu 127 171 -128 954 144 0 0 chr13 15112555 15112687 -86760482 + AluJo/FRAM SINE Alu 156 287 -25 300 260 63 34 chr13 15112735 15112951 -86760218 + L1MC4 LINE L1 7036 7212 -749 489 237 128 60 chr13 15113028 15113623 -86759546 + L1MC5 LINE L1 7283 7917 -44 476 285 8 49 chr13 15113696 15113819 -86759350 + MER5B DNA MER1_type 1 118 -60 273 75 0 0 chr13 15113822 15113862 -86759307 + (T)n Simple_repeat Simple_repeat 1 40 0 272 173 19 0 chr13 15113866 15113918 -86759251 + MER5B DNA MER1_type 125 177 -1 418 323 29 31 chr13 15114202 15114413 -86758756 - MIR SINE MIR -50 212 3 2271 86 21 0 chr13 15114795 15115085 -86758084 - AluSg SINE Alu -14 296 1 1522 146 104 19 chr13 15115894 15116202 -86756967 + MER2 DNA MER2_type 7 340 -5 393 130 26 26 chr13 15116256 15116333 -86756836 - MADE1 DNA Mariner -1 79 3 212 57 0 29 chr13 15116668 15116703 -86756466 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2324 104 0 3 chr13 15116732 15117039 -86756130 - AluSx SINE Alu -5 307 2 192 253 121 0 chr13 15117584 15117667 -86755502 - MIR SINE MIR 0 262 170 1483 268 51 35 chr13 15117770 15118315 -86754854 + MLT1E LTR MaLR 23 576 -17 1905 194 63 21 chr13 15118755 15119229 -86753940 - MLT1D LTR MaLR -9 496 3 702 284 104 68 chr13 15119366 15119593 -86753576 - L1M4 LINE L1 -1092 5054 4837 2449 80 0 6 chr13 15119593 15119904 -86753265 - AluSc SINE Alu 0 309 1 702 284 104 68 chr13 15119904 15119925 -86753244 - L1M4 LINE L1 -1309 4837 4818 697 157 35 9 chr13 15119925 15120040 -86753129 - FLAM_C SINE Alu -15 118 1 702 284 104 68 chr13 15120040 15120307 -86752862 - L1M4 LINE L1 -1328 4818 4519 733 138 111 3 chr13 15120531 15120755 -86752414 - AluJb SINE Alu -6 306 1 824 174 0 0 chr13 15122586 15122718 -86750451 - FLAM_C SINE Alu 0 133 2 22 35 0 0 chr13 15124075 15124104 -86749065 + AT_rich Low_complexity Low_complexity 1 29 0 228 67 0 0 chr13 15124265 15124295 -86748874 + (TA)n Simple_repeat Simple_repeat 2 31 0 1582 122 21 14 chr13 15124806 15125085 -86748084 + AluSx SINE Alu 1 281 -31 273 208 13 52 chr13 15126391 15126468 -86746701 + MIR SINE MIR 183 256 -6 424 245 179 72 chr13 15126819 15127008 -86746161 - L1MC4 LINE L1 -537 7505 7338 2357 95 0 0 chr13 15127008 15127314 -86745855 + AluSq SINE Alu 1 306 -7 424 245 179 72 chr13 15127314 15127581 -86745588 - L1MC4 LINE L1 -704 7338 7000 1108 143 19 184 chr13 15127587 15127986 -86745183 - L1MC3 LINE L1 -8 7777 7467 2176 124 3 0 chr13 15127986 15128292 -86744877 - AluSx SINE Alu -5 307 1 1108 143 19 184 chr13 15128292 15128366 -86744803 - L1MC3 LINE L1 -318 7467 7382 250 61 0 0 chr13 15128366 15128399 -86744770 + MLT1A2 LTR MaLR 281 313 -61 1336 185 0 0 chr13 15128403 15128625 -86744544 - AluJb SINE Alu -4 308 87 311 107 36 0 chr13 15128662 15128718 -86744451 + T-rich Low_complexity Low_complexity 2 59 0 1840 179 0 10 chr13 15128740 15129036 -86744133 - AluJb SINE Alu -18 294 2 633 264 68 45 chr13 15129113 15129550 -86743619 - MER39 LTR ERV1 0 629 39 3143 162 29 109 chr13 15129568 15130131 -86743038 + L1 LINE L1 4275 4882 -1264 1972 136 0 0 chr13 15130131 15130403 -86742766 + AluSx SINE Alu 7 278 -34 243 0 0 0 chr13 15130408 15130435 -86742734 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3143 162 29 109 chr13 15130435 15130506 -86742663 + L1 LINE L1 4886 4961 -1185 1926 138 7 0 chr13 15130506 15130782 -86742387 - AluSg SINE Alu -32 278 1 2226 126 0 3 chr13 15130786 15131095 -86742074 - AluSx SINE Alu -4 308 1 3143 162 29 109 chr13 15131095 15131409 -86741760 + L1 LINE L1 4964 5158 -988 408 102 0 175 chr13 15131406 15131515 -86741654 + L1M LINE L1 5255 5327 -973 * 2102 119 7 3 chr13 15131515 15131808 -86741361 - AluSc SINE Alu -11 298 5 408 102 0 175 chr13 15131808 15131864 -86741305 + L1M LINE L1 5327 5391 -909 297 104 0 21 chr13 15131845 15131893 -86741276 + L1MB2 LINE L1 4876 4922 -1224 * 337 200 0 0 chr13 15131893 15131948 -86741221 + Alu SINE Alu 1 55 -253 1997 125 4 0 chr13 15131950 15132275 -86740894 + AluSq SINE Alu 3 328 0 951 172 23 50 chr13 15132275 15132496 -86740673 + MSTB2 LTR MaLR 240 454 -3 326 171 0 0 chr13 15134044 15134114 -86739055 + L1MB4 LINE L1 6111 6180 0 655 184 12 212 chr13 15134117 15134256 -86738913 + L1MB2 LINE L1 4995 5160 -986 2000 142 0 0 chr13 15134256 15134537 -86738632 + AluSx SINE Alu 1 281 -31 292 158 18 0 chr13 15134537 15134594 -86738575 + Alu SINE Alu 244 301 0 655 184 12 212 chr13 15134594 15134816 -86738353 + L1MB2 LINE L1 5158 5329 -817 1741 117 41 63 chr13 15134818 15135135 -86738034 + AluJb SINE Alu 3 312 0 243 0 0 0 chr13 15135141 15135168 -86738001 + (TA)n Simple_repeat Simple_repeat 2 28 0 3851 146 72 45 chr13 15135259 15135754 -86737415 + L1MB2 LINE L1 5322 5849 -322 598 217 8 0 chr13 15135754 15135874 -86737295 + FLAM_C SINE Alu 1 121 -12 3851 146 72 45 chr13 15135874 15136199 -86736970 + L1MB2 LINE L1 5849 6164 -7 858 308 13 0 chr13 15137576 15137800 -86735369 + MIR SINE MIR 2 228 -34 1541 199 21 0 chr13 15138128 15138414 -86734755 + AluJo SINE Alu 1 292 -20 2195 110 0 28 chr13 15138416 15138734 -86734435 + AluSx SINE Alu 1 309 -3 201 242 16 0 chr13 15139029 15139091 -86734078 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 189 0 0 0 chr13 15139127 15139148 -86734021 + (TC)n Simple_repeat Simple_repeat 2 22 0 2219 121 0 6 chr13 15139148 15139462 -86733707 - AluSx SINE Alu 0 312 1 1902 200 17 3 chr13 15139677 15140037 -86733132 + MLT1A1 LTR MaLR 1 365 0 40 0 0 0 chr13 15140059 15140099 -86733070 + AT_rich Low_complexity Low_complexity 1 40 0 208 270 81 0 chr13 15140208 15140282 -86732887 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 775 258 22 4 chr13 15140285 15140514 -86732655 - L1MC4a LINE L1 -1868 5940 5708 220 295 45 36 chr13 15140587 15140699 -86732470 + L2 LINE L2 2185 2297 -1017 1178 134 8 5 chr13 15141503 15141876 -86731293 + LTR47B LTR ERVL 1 443 0 3940 84 21 3 chr13 15141975 15142545 -86730624 + L1PA13 LINE L1 5564 6143 -20 216 0 0 0 chr13 15142549 15142573 -86730596 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1442 137 15 27 chr13 15142757 15143019 -86730150 - THE1C LTR MaLR 0 375 117 1451 157 0 130 chr13 15143174 15143371 -86729798 - AluJo SINE Alu -1 301 167 1976 136 0 7 chr13 15143371 15143658 -86729511 - AluSx SINE Alu -27 285 1 1451 157 0 130 chr13 15143658 15143805 -86729364 - AluJo SINE Alu -135 167 2 1918 125 76 0 chr13 15143846 15144134 -86729035 + AluSg SINE Alu 1 310 0 1931 221 41 32 chr13 15144260 15144956 -86728213 - L1ME1 LINE L1 -306 5860 5158 704 189 39 102 chr13 15144956 15145181 -86727988 + L1MA4 LINE L1 5995 6165 -135 726 191 8 8 chr13 15145181 15145307 -86727862 + FLAM_A SINE Alu 1 126 -7 704 189 39 102 chr13 15145307 15145426 -86727743 + L1MA4 LINE L1 6165 6290 -10 * 2997 235 30 26 chr13 15145425 15146221 -86726948 - L1ME1 LINE L1 -968 5178 4387 2244 105 3 3 chr13 15146221 15146515 -86726654 - AluSc SINE Alu -15 294 1 2997 235 30 26 chr13 15146515 15146565 -86726604 - L1ME1 LINE L1 -1759 4387 4339 1981 153 0 7 chr13 15146565 15146860 -86726309 + AluSx SINE Alu 1 293 -19 2997 235 30 26 chr13 15146860 15147064 -86726105 - L1ME1 LINE L1 -1807 4339 4122 374 217 45 54 chr13 15147069 15147290 -86725879 - L1ME1 LINE L1 -2900 3246 3028 198 0 0 0 chr13 15147300 15147322 -86725847 + (T)n Simple_repeat Simple_repeat 1 22 0 2032 91 52 21 chr13 15147366 15147652 -86725517 + AluY SINE Alu 1 295 -16 3302 98 4 2 chr13 15147838 15148319 -86724850 + MER41B LTR ERV1 154 635 0 889 202 99 34 chr13 15148319 15148552 -86724617 - MER57A-int LTR ERV1 -7287 250 3 2007 195 33 0 chr13 15148554 15148944 -86724225 - MER57A LTR ERV1 0 403 1 233 218 55 0 chr13 15148946 15149001 -86724168 - MER45 DNA AcHobo -878 75 18 1657 179 26 11 chr13 15149001 15149353 -86723816 + MLT1A1 LTR MaLR 1 357 -8 2247 131 0 0 chr13 15149481 15149793 -86723376 + AluSx SINE Alu 1 312 0 348 299 116 42 chr13 15149793 15150077 -86723092 + L1ME4a LINE L1 5737 6041 -80 257 0 30 0 chr13 15150684 15150717 -86722452 + (TA)n Simple_repeat Simple_repeat 2 35 0 2129 109 7 7 chr13 15150717 15151011 -86722158 - AluSq SINE Alu -18 295 2 462 78 70 0 chr13 15151669 15151797 -86721372 + (TA)n Simple_repeat Simple_repeat 2 138 0 24 0 0 0 chr13 15151797 15151821 -86721348 + AT_rich Low_complexity Low_complexity 1 24 0 682 33 44 50 chr13 15151821 15152002 -86721167 + (TA)n Simple_repeat Simple_repeat 1 180 0 2121 111 32 0 chr13 15152002 15152282 -86720887 - AluSx SINE Alu -23 289 1 361 109 0 0 chr13 15153199 15153254 -86719915 - MSTA LTR MaLR 0 428 374 1718 132 150 6 chr13 15153322 15153649 -86719520 - MSTA LTR MaLR -54 374 1 2085 122 21 0 chr13 15154012 15154300 -86718869 - AluSg SINE Alu -14 296 3 2054 135 3 0 chr13 15154561 15154864 -86718305 - AluSp SINE Alu -9 304 1 2306 106 0 0 chr13 15154965 15155268 -86717901 + AluSc SINE Alu 4 306 -3 1612 184 3 11 chr13 15155349 15155632 -86717537 + AluJb SINE Alu 1 281 -31 2045 115 0 14 chr13 15155632 15155926 -86717243 - AluSc SINE Alu -18 291 1 1000 122 0 0 chr13 15156122 15156261 -86716908 - AluSq/x SINE Alu -173 139 1 3009 167 20 19 chr13 15156262 15157016 -86716153 - L1MA8 LINE L1 -461 5830 5074 2470 113 68 5 chr13 15157016 15157416 -86715753 - MSTB LTR MaLR 0 426 2 3009 167 20 19 chr13 15157416 15157452 -86715717 - L1MA8 LINE L1 -1217 5074 5040 555 16 0 0 chr13 15157462 15157526 -86715643 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 954 182 53 0 chr13 15157526 15157696 -86715473 - AluSg/x SINE Alu 0 312 134 735 159 22 0 chr13 15157699 15157837 -86715332 - L1MA8 LINE L1 -1094 5052 4912 204 97 0 0 chr13 15157838 15157869 -86715300 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 774 184 21 7 chr13 15157873 15158014 -86715155 - AluJb SINE Alu -37 275 133 1335 183 3 99 chr13 15158014 15158348 -86714821 - AluJb SINE Alu 0 302 1 1304 147 25 4 chr13 15158353 15158591 -86714578 - MSTB2 LTR MaLR -214 243 1 305 378 7 14 chr13 15158685 15158702 -86714467 + L2 LINE L2 2564 2580 -734 2493 189 42 12 chr13 15158702 15159060 -86714109 + LTR42 LTR ERVL 1 378 -117 2319 96 6 3 chr13 15159060 15159372 -86713797 - AluSp SINE Alu 0 313 1 2493 189 42 12 chr13 15159372 15159494 -86713675 + LTR42 LTR ERVL 378 495 0 305 378 7 14 chr13 15159494 15159619 -86713550 + L2 LINE L2 2580 2705 -609 350 407 19 0 chr13 15159630 15159792 -86713377 - L2 LINE L2 -4 3268 3104 1437 201 26 63 chr13 15159795 15160172 -86712997 + MLT2D LTR ERVL 1 363 -51 1070 157 30 0 chr13 15160172 15160369 -86712800 + MER2 DNA MER2_type 4 206 -139 319 122 0 0 chr13 15160447 15160496 -86712673 + MLT2D LTR ERVL 472 520 0 281 257 26 26 chr13 15160603 15160716 -86712453 + MER117 DNA MER1_type 12 124 -73 284 294 69 0 chr13 15160919 15161021 -86712148 - MIR SINE MIR -121 141 33 1511 150 21 25 chr13 15161185 15161425 -86711744 - AluJo SINE Alu -73 239 1 309 329 29 0 chr13 15161483 15161623 -86711546 - MIR SINE MIR 0 262 119 2093 133 0 0 chr13 15161864 15162150 -86711019 - AluSc SINE Alu -23 286 1 7399 43 0 0 chr13 15162326 15163616 -86709553 + L1PA5 LINE L1 4865 6154 0 244 253 27 0 chr13 15163663 15163738 -86709431 + L1ME LINE L1 5528 5604 -517 437 158 0 88 chr13 15163777 15163836 -86709333 - L1MC5 LINE L1 -53 7908 7845 2675 101 8 11 chr13 15163836 15164212 -86708957 + THE1C LTR MaLR 1 375 0 10172 105 39 37 chr13 15164212 15165788 -86707381 + THE1C-int LTR MaLR 1 1580 0 2638 116 0 11 chr13 15165788 15166167 -86707002 + THE1C LTR MaLR 1 375 0 437 158 0 88 chr13 15166167 15166219 -86706950 - L1MC5 LINE L1 -113 7848 7805 318 231 157 0 chr13 15166359 15166467 -86706702 - L1ME3A LINE L1 0 6170 6046 625 165 59 83 chr13 15166484 15166738 -86706431 - L1MC5 LINE L1 -261 7700 7453 1209 207 53 57 chr13 15166749 15167139 -86706030 - L1MC5 LINE L1 -593 7368 6979 2279 92 0 7 chr13 15167139 15167152 -86706017 - AluSc SINE Alu 0 309 297 199 0 0 0 chr13 15167152 15167174 -86705995 + (TTTA)n Simple_repeat Simple_repeat 3 132 0 2279 92 0 7 chr13 15167174 15167455 -86705714 - AluSc SINE Alu -12 297 1 1209 207 53 57 chr13 15167455 15167538 -86705631 - L1MC5 LINE L1 -982 6979 6897 31 44 0 0 chr13 15167640 15167685 -86705484 + AT_rich Low_complexity Low_complexity 1 45 0 1755 166 21 0 chr13 15168707 15168991 -86704178 - AluJo SINE Alu -22 290 1 2311 84 3 0 chr13 15169732 15170030 -86703139 - AluSg1 SINE Alu -10 299 1 1824 214 74 11 chr13 15170471 15170944 -86702225 + MLT1D LTR MaLR 1 503 -2 200 253 161 23 chr13 15171620 15171707 -86701462 - L2 LINE L2 0 3313 3215 2272 104 7 7 chr13 15171708 15172017 -86701152 + AluSc SINE Alu 1 309 0 348 277 136 102 chr13 15173696 15174014 -86699155 - L1M2 LINE L1 -5659 1190 884 204 40 0 0 chr13 15174014 15174039 -86699130 + (CCG)n Simple_repeat Simple_repeat 3 27 0 348 277 136 102 chr13 15174039 15174340 -86698829 - L1M2 LINE L1 -5965 884 550 248 273 108 65 chr13 15176138 15176277 -86696892 - MIR3 SINE MIR -23 185 41 21 0 0 0 chr13 15177986 15178007 -86695162 + AT_rich Low_complexity Low_complexity 1 21 0 2145 111 34 0 chr13 15178143 15178440 -86694729 - AluSg SINE Alu -3 307 1 28 61 0 0 chr13 15178523 15178572 -86694597 + AT_rich Low_complexity Low_complexity 1 49 0 261 285 139 0 chr13 15178596 15178761 -86694408 - L1MC/D LINE L1 -2248 5560 5373 2204 98 0 10 chr13 15179274 15179581 -86693588 - AluSq SINE Alu -9 304 1 290 275 148 40 chr13 15179819 15179968 -86693201 + MIR SINE MIR 2 166 -96 568 197 61 0 chr13 15179968 15180100 -86693069 - L1MB7 LINE L1 0 6184 6045 267 163 0 0 chr13 15180122 15180171 -86692998 + L1MA5 LINE L1 5546 5594 -697 * 413 159 105 2 chr13 15180145 15180261 -86692908 + L1MA5 LINE L1 5958 6096 -204 2127 143 91 10 chr13 15180261 15180411 -86692758 - Tigger2 DNA MER2_type 0 2718 2582 1983 91 0 0 chr13 15180411 15180664 -86692505 - AluSq SINE Alu -60 253 1 2127 143 91 10 chr13 15180664 15180919 -86692250 - Tigger2 DNA MER2_type -136 2582 2280 377 143 0 0 chr13 15180917 15180973 -86692196 - Tigger2 DNA MER2_type -2649 69 14 * 1028 120 40 0 chr13 15180974 15181149 -86692020 + L1MA5 LINE L1 6114 6295 -5 296 294 12 0 chr13 15182236 15182321 -86690848 + L2 LINE L2 2438 2523 -791 22 0 0 0 chr13 15182340 15182362 -86690807 + AT_rich Low_complexity Low_complexity 1 22 0 343 198 10 0 chr13 15182848 15182916 -86690253 + AluS SINE Alu 2 57 -243 23 33 0 0 chr13 15183064 15183094 -86690075 + AT_rich Low_complexity Low_complexity 1 30 0 2979 207 102 4 chr13 15183094 15184053 -86689116 - L1ME2 LINE L1 -9 6089 5041 1933 129 16 32 chr13 15184056 15184366 -86688803 - AluJo SINE Alu -7 305 1 287 270 0 0 chr13 15184366 15184440 -86688729 - L1ME2 LINE L1 -1978 4102 4029 699 169 48 16 chr13 15184441 15184565 -86688604 + FLAM_A SINE Alu 1 128 -5 2065 91 6 72 chr13 15184567 15184886 -86688283 + AluSc SINE Alu 1 298 -11 338 229 10 10 chr13 15184940 15185036 -86688133 - L1ME2 LINE L1 -2045 4035 3940 22 35 0 0 chr13 15185082 15185111 -86688058 + AT_rich Low_complexity Low_complexity 1 29 0 2161 92 11 7 chr13 15185112 15185396 -86687773 - AluSg SINE Alu -25 285 1 871 186 14 0 chr13 15185510 15185650 -86687519 - FRAM SINE Alu -26 150 9 443 268 41 41 chr13 15185650 15185782 -86687387 - L1ME2 LINE L1 -4672 1589 1455 2471 87 0 0 chr13 15185782 15186093 -86687076 - AluY SINE Alu 0 311 1 443 268 41 41 chr13 15186093 15186154 -86687015 - L1ME2 LINE L1 -4805 1456 1396 402 201 129 110 chr13 15186241 15186283 -86686886 - L1ME2 LINE L1 -4863 1115 1075 2136 121 0 10 chr13 15186283 15186588 -86686581 - AluSg SINE Alu -8 302 1 402 201 129 110 chr13 15186588 15186656 -86686513 - L1ME2 LINE L1 -4903 1075 1046 2289 90 7 10 chr13 15186656 15186957 -86686212 + AluY SINE Alu 1 300 -11 402 201 129 110 chr13 15186957 15187054 -86686115 - L1ME2 LINE L1 -4932 1046 952 332 221 108 15 chr13 15187150 15187352 -86685817 - L1ME2 LINE L1 -5236 834 484 2092 117 7 10 chr13 15187480 15187780 -86685389 + AluSx SINE Alu 1 299 -13 476 276 125 53 chr13 15187881 15188320 -86684849 - L1ME2 LINE L1 -5597 473 12 37965 65 14 4 chr13 15189118 15195196 -86677973 - L1PA5 LINE L1 -2 6152 12 1481 259 75 60 chr13 15195433 15196082 -86677087 - MLT2F LTR ERVL -4 659 1 1877 232 71 35 chr13 15196387 15196922 -86676247 - ERVL LTR ERVL -360 5404 4851 727 233 88 18 chr13 15196939 15197167 -86676002 - L2 LINE L2 -1626 1688 1445 237 202 32 96 chr13 15197379 15197473 -86675696 + MIR SINE MIR 175 262 0 728 248 124 5 chr13 15197690 15197900 -86675269 + MIR SINE MIR 11 245 -17 297 351 73 20 chr13 15198376 15198527 -86674642 + L2 LINE L2 2582 2740 -574 2140 119 0 3 chr13 15198527 15198830 -86674339 - AluJb SINE Alu -8 304 3 1196 74 0 13 chr13 15199242 15199391 -86673778 - AluSq/x SINE Alu -165 147 1 742 173 12 36 chr13 15199399 15199567 -86673602 - L1MB8 LINE L1 0 6178 6015 1751 190 65 8 chr13 15199577 15199945 -86673224 + MSTD LTR MaLR 1 389 -7 3256 204 32 4 chr13 15199946 15201302 -86671867 - L1MB8 LINE L1 -185 5993 4602 2320 103 0 0 chr13 15201321 15201621 -86671548 - AluSx SINE Alu -12 300 1 213 281 151 41 chr13 15201702 15201848 -86671321 - MIR SINE MIR -98 164 3 931 222 73 28 chr13 15202000 15202288 -86670881 - L1ME3A LINE L1 -37 6116 5816 184 307 163 33 chr13 15202661 15202876 -86670293 + MIR SINE MIR 14 256 -6 2411 75 0 3 chr13 15203083 15203378 -86669791 - AluSq SINE Alu -19 294 1 344 288 50 25 chr13 15204485 15204683 -86668486 + MLT1L LTR MaLR 1 203 -412 275 214 127 40 chr13 15204692 15204818 -86668351 - L1ME3A LINE L1 -685 5462 5326 1071 156 53 97 chr13 15204887 15205247 -86667922 - MLT1A1 LTR MaLR -3 362 19 942 237 35 9 chr13 15205305 15205533 -86667636 + Tigger7 DNA MER2_type 1 234 -471 297 197 42 0 chr13 15205534 15205605 -86667564 + Tigger7 DNA MER2_type 2482 2555 -32 318 270 98 42 chr13 15205867 15206082 -86667087 - L1ME3A LINE L1 -1176 4953 4727 2639 147 153 6 chr13 15206256 15206772 -86666397 - MER7C DNA MER2_type -1 601 10 2152 128 0 0 chr13 15206826 15207122 -86666047 - AluSq SINE Alu -17 296 1 398 258 161 51 chr13 15207268 15207405 -86665764 - L1ME3A LINE L1 -1909 4220 4099 2389 54 10 10 chr13 15207405 15207699 -86665470 + AluY SINE Alu 7 300 -11 398 258 161 51 chr13 15207699 15207953 -86665216 - L1ME3A LINE L1 -2030 4099 3786 359 131 172 30 chr13 15207994 15208093 -86665076 - MER3 DNA MER1_type -96 113 1 1919 154 0 10 chr13 15208205 15208498 -86664671 + AluJb SINE Alu 1 290 -22 374 286 137 24 chr13 15208505 15208747 -86664422 - L1ME3A LINE L1 -2515 3614 3401 810 215 98 5 chr13 15208747 15208952 -86664217 + MER58A DNA MER1_type 1 224 0 374 286 137 24 chr13 15208952 15209346 -86663823 - L1ME3A LINE L1 -2728 3401 2906 353 290 101 22 chr13 15209353 15209849 -86663320 - L1ME3A LINE L1 -3279 2850 2316 914 193 69 112 chr13 15209869 15210369 -86662800 - LTR8A LTR ERV1 -15 707 102 776 208 72 44 chr13 15210412 15210662 -86662507 - LTR8 LTR ERV1 -434 257 1 1600 107 0 0 chr13 15210832 15211047 -86662122 - AluSc SINE Alu -8 301 87 21 0 0 0 chr13 15211054 15211075 -86662094 + AT_rich Low_complexity Low_complexity 1 21 0 237 261 159 52 chr13 15211307 15211767 -86661402 - L1ME3A LINE L1 -5011 1108 600 243 88 0 0 chr13 15212122 15212156 -86661013 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1009 185 177 12 chr13 15212156 15212399 -86660770 - AluJb SINE Alu -18 284 2 2006 141 0 7 chr13 15212859 15213163 -86660006 - AluSx SINE Alu -10 302 1 1634 231 94 36 chr13 15213737 15214287 -86658882 - MER119 DNA MER1_type -1 582 1 209 229 16 33 chr13 15214871 15214932 -86658237 + GA-rich Low_complexity Low_complexity 1 60 0 2020 119 31 3 chr13 15215298 15215591 -86657578 + AluSx SINE Alu 1 301 -11 369 261 90 24 chr13 15215801 15216075 -86657094 - L1P4 LINE L1 -302 5819 5533 313 274 10 49 chr13 15216804 15216906 -86656263 + MIR SINE MIR 57 154 -108 1053 144 8 81 chr13 15217324 15217560 -86655609 + MER20B DNA MER1_type 1 219 0 801 263 106 32 chr13 15217678 15217813 -86655356 + L2 LINE L2 2950 3074 -239 2097 99 13 33 chr13 15217813 15218116 -86655053 - AluSx SINE Alu -15 297 1 801 263 106 32 chr13 15218116 15218127 -86655042 + L2 LINE L2 3074 3083 -230 1595 166 83 3 chr13 15218127 15218416 -86654753 - AluJb SINE Alu 0 312 1 801 263 106 32 chr13 15218416 15218607 -86654562 + L2 LINE L2 3083 3313 0 273 322 0 22 chr13 15218872 15218962 -86654207 + MER5A DNA MER1_type 36 123 -66 723 241 27 0 chr13 15218987 15219174 -86653995 + L1MB4 LINE L1 4887 5078 -1068 2402 166 96 9 chr13 15219178 15219845 -86653324 + L1MB4 LINE L1 5109 5831 -349 1365 76 6 0 chr13 15219845 15220017 -86653152 + AluSc SINE Alu 1 173 -136 1358 160 109 24 chr13 15220017 15220355 -86652814 + L1MB4 LINE L1 5814 6180 0 362 171 13 0 chr13 15220367 15220443 -86652726 + L1MB8 LINE L1 6102 6178 0 1396 181 81 54 chr13 15221393 15221607 -86651562 - L1MB7 LINE L1 -347 5837 5630 2188 104 3 3 chr13 15221607 15221904 -86651265 - AluSg SINE Alu -13 297 1 1396 181 81 54 chr13 15221904 15222025 -86651144 - L1MB7 LINE L1 -554 5630 5514 1506 131 30 128 chr13 15222025 15222361 -86650808 - AluJo SINE Alu -9 303 1 2378 93 0 0 chr13 15222365 15222665 -86650504 - AluSc SINE Alu -9 300 1 1396 181 81 54 chr13 15222665 15222693 -86650476 - L1MB7 LINE L1 -672 5512 5458 2442 56 0 7 chr13 15222789 15223092 -86650077 - AluY SINE Alu -10 301 1 419 237 98 6 chr13 15223130 15223311 -86649858 + MIR SINE MIR 21 216 -46 380 242 153 32 chr13 15223534 15223658 -86649511 + MIR SINE MIR 16 154 -108 837 301 194 44 chr13 15223675 15224890 -86648279 - L2 LINE L2 -16 3297 1891 1138 281 89 37 chr13 15224890 15225398 -86647771 - MLT1H LTR MaLR -4 545 12 466 266 42 151 chr13 15225401 15226045 -86647124 - L2 LINE L2 -1415 1899 1326 2102 141 0 0 chr13 15227266 15227570 -86645599 - AluSx SINE Alu -8 304 1 2538 53 0 10 chr13 15227796 15228099 -86645070 + AluY SINE Alu 1 300 -11 212 259 0 17 chr13 15228334 15228392 -86644777 + CT-rich Low_complexity Low_complexity 2 58 0 301 255 92 41 chr13 15228941 15229039 -86644130 + L2 LINE L2 3167 3269 -3 343 314 99 84 chr13 15229267 15229611 -86643558 - L2 LINE L2 -1 3271 2923 295 288 24 16 chr13 15230321 15230461 -86642708 - L1M4 LINE L1 -1062 5084 4944 2192 149 12 0 chr13 15230549 15230892 -86642277 + MER7A DNA MER2_type 1 345 -1 905 241 100 17 chr13 15230901 15231191 -86641978 - L1M4 LINE L1 -1812 4334 4021 434 171 0 40 chr13 15231225 15231301 -86641868 + Tigger5 DNA MER2_type 7 79 -2244 491 158 0 12 chr13 15231321 15231403 -86641766 + Tigger5 DNA MER2_type 2242 2322 -1 848 250 125 95 chr13 15231430 15232033 -86641136 - L1M4 LINE L1 -1856 4290 3650 1190 227 106 0 chr13 15232033 15232306 -86640863 - AluJo SINE Alu 0 302 1 848 250 125 95 chr13 15232306 15232597 -86640572 - L1M4 LINE L1 -2496 3650 3369 1207 222 100 61 chr13 15232729 15232996 -86640173 - L1ME3A LINE L1 0 6170 5915 264 40 60 0 chr13 15232996 15233046 -86640123 + (TG)n Simple_repeat Simple_repeat 2 54 0 1610 204 4 7 chr13 15233046 15233326 -86639843 - AluJb SINE Alu -29 283 5 1207 222 100 61 chr13 15233326 15233585 -86639584 - L1ME3A LINE L1 -254 5916 5622 226 116 47 0 chr13 15233633 15233676 -86639493 - L1MEd LINE L1 -3834 2810 2766 211 267 0 0 chr13 15233770 15233815 -86639354 - MIR SINE MIR -21 241 197 265 360 15 5 chr13 15233827 15234024 -86639145 - L1MEd LINE L1 -4722 2103 1905 23 0 0 0 chr13 15234051 15234074 -86639095 + AT_rich Low_complexity Low_complexity 1 23 0 316 298 65 26 chr13 15234241 15234320 -86638849 - L1MEd LINE L1 -5103 1439 1365 1406 176 74 35 chr13 15234320 15234604 -86638565 - AluJb SINE Alu -17 295 1 316 298 65 26 chr13 15234604 15234772 -86638397 - L1MEd LINE L1 -5177 1365 1225 299 316 147 26 chr13 15234815 15235081 -86638088 - L1MEd LINE L1 -5345 1289 992 21 36 0 0 chr13 15235473 15235501 -86637668 + AT_rich Low_complexity Low_complexity 1 28 0 1402 161 16 79 chr13 15239479 15239796 -86633373 + AluSx SINE Alu 1 297 -15 1825 127 56 0 chr13 15240044 15240328 -86632841 + AluSx SINE Alu 3 302 -10 242 288 0 30 chr13 15240446 15240512 -86632657 - L2 LINE L2 -50 3222 3159 5664 104 25 34 chr13 15241551 15242398 -86630771 - L1PA15 LINE L1 -4 6161 5308 2060 122 20 0 chr13 15242398 15242694 -86630475 - AluSg SINE Alu -8 302 1 5664 104 25 34 chr13 15242694 15243615 -86629554 - L1PA15 LINE L1 -857 5308 4397 2017 147 3 7 chr13 15243619 15243919 -86629250 - AluSx SINE Alu -13 299 1 2947 218 25 1 chr13 15243993 15244676 -86628493 - L1PA15-16 LINE L1 -3388 3461 2763 23 33 0 0 chr13 15246059 15246089 -86627080 + AT_rich Low_complexity Low_complexity 1 30 0 386 273 82 31 chr13 15246892 15247086 -86626083 + L1MEd LINE L1 606 809 -5310 26 0 0 0 chr13 15248005 15248031 -86625138 + AT_rich Low_complexity Low_complexity 1 26 0 2284 120 0 7 chr13 15248125 15248434 -86624735 + AluSx SINE Alu 1 307 -5 344 318 72 63 chr13 15248563 15248881 -86624288 + HAL1 LINE L1 1214 1534 -973 439 271 165 4 chr13 15249131 15249367 -86623802 + L1MEd LINE L1 2242 2515 -3614 609 281 151 87 chr13 15249711 15250672 -86622497 + L1MEd LINE L1 3042 4063 -2066 26 30 0 0 chr13 15250715 15250748 -86622421 + AT_rich Low_complexity Low_complexity 1 33 0 2556 128 21 19 chr13 15250751 15251173 -86621996 - L1PB3 LINE L1 -7 6147 5725 527 283 84 58 chr13 15251420 15251605 -86621564 + L1MEd LINE L1 4394 4573 -1556 1732 172 44 0 chr13 15251605 15251902 -86621267 + AluJb SINE Alu 1 310 -2 527 283 84 58 chr13 15251902 15252333 -86620836 + L1MEd LINE L1 4573 4992 -1137 2507 71 7 0 chr13 15252333 15252642 -86620527 + AluY SINE Alu 1 311 0 527 283 84 58 chr13 15252642 15252750 -86620419 + L1MEd LINE L1 4992 5096 -1033 2833 148 41 36 chr13 15252750 15253100 -86620069 + L1MA4 LINE L1 5710 6066 -234 2050 121 10 3 chr13 15253100 15253398 -86619771 - AluSx SINE Alu -8 304 5 2833 148 41 36 chr13 15253398 15253635 -86619534 + L1MA4 LINE L1 6066 6300 0 527 283 84 58 chr13 15253635 15253696 -86619473 + L1MEd LINE L1 5096 5201 -928 335 181 236 0 chr13 15253760 15253832 -86619337 + Tigger5 DNA MER2_type 2234 2322 -1 21 0 0 0 chr13 15253869 15253890 -86619279 + AT_rich Low_complexity Low_complexity 1 21 0 216 278 133 11 chr13 15255551 15255641 -86617528 + MER91C DNA MER1_type 39 139 -1 242 195 117 13 chr13 15256471 15256548 -86616621 + L1MC5 LINE L1 7833 7917 -44 1590 193 0 37 chr13 15257255 15257551 -86615618 - AluJb SINE Alu -27 285 1 353 272 53 35 chr13 15258160 15258274 -86614895 - L2 LINE L2 -1 3271 3156 262 314 0 12 chr13 15259395 15259481 -86613688 + (TA)n Simple_repeat Simple_repeat 1 85 0 2170 173 48 35 chr13 15259481 15259937 -86613232 - MLT2B2 LTR ERVL -50 465 4 229 261 145 0 chr13 15260522 15260591 -86612578 + L2 LINE L2 3179 3257 -15 1797 151 13 20 chr13 15260838 15261136 -86612033 - AluSx SINE Alu -16 296 1 188 324 14 0 chr13 15261735 15261806 -86611363 - L2 LINE L2 -313 2959 2888 256 299 16 136 chr13 15261841 15262025 -86611144 + MER5B DNA MER1_type 10 171 -7 2478 68 0 3 chr13 15263673 15263980 -86609189 + AluY SINE Alu 1 306 -5 30 83 0 0 chr13 15264293 15264365 -86608804 + AT_rich Low_complexity Low_complexity 1 72 0 833 238 76 39 chr13 15264907 15265264 -86607905 + L1MC5 LINE L1 7166 7535 -426 505 151 0 43 chr13 15266104 15266197 -86606972 - FLAM_C SINE Alu -8 135 47 1738 108 13 0 chr13 15266423 15266654 -86606515 + AluSp SINE Alu 44 277 -36 195 114 0 0 chr13 15266663 15266698 -86606471 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 226 263 15 86 chr13 15266698 15266896 -86606273 - HAL1 LINE L1 -566 1941 1758 303 49 0 0 chr13 15266903 15266944 -86606225 + (TG)n Simple_repeat Simple_repeat 2 42 0 685 237 43 61 chr13 15266964 15267243 -86605926 - HAL1 LINE L1 -1446 1061 788 1085 258 171 36 chr13 15267248 15267803 -86605366 - HAL1 LINE L1 -1637 870 241 294 195 0 6 chr13 15267812 15267875 -86605294 - FLAM SINE Alu -6 127 76 2229 95 0 10 chr13 15268364 15268660 -86604509 + AluSx SINE Alu 1 293 -19 894 186 54 14 chr13 15268811 15269032 -86604137 - MER20B DNA MER1_type -1 782 553 1762 221 93 41 chr13 15269279 15269840 -86603329 - L1ME2 LINE L1 -121 6043 5454 2035 113 28 7 chr13 15270041 15270332 -86602837 - AluSx SINE Alu -15 297 1 2186 122 3 0 chr13 15270339 15270643 -86602526 - AluSp SINE Alu -8 305 1 22 35 0 0 chr13 15270845 15270874 -86602295 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr13 15271104 15271148 -86602021 + AT_rich Low_complexity Low_complexity 1 44 0 195 271 224 28 chr13 15271567 15271674 -86601495 + L2 LINE L2 3138 3265 -7 2229 103 0 3 chr13 15271855 15272145 -86601024 + AluY SINE Alu 1 289 -22 1728 167 21 0 chr13 15272681 15272963 -86600206 - AluJo SINE Alu -24 288 1 1739 154 28 18 chr13 15273525 15273810 -86599359 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr13 15274703 15274724 -86598445 + AT_rich Low_complexity Low_complexity 1 21 0 598 203 42 0 chr13 15276470 15276588 -86596581 + MER58B DNA MER1_type 216 338 -3 398 296 59 7 chr13 15276601 15276736 -86596433 - MIR SINE MIR -112 150 9 375 216 207 0 chr13 15276785 15276896 -86596273 + MER104 DNA Tc2 47 180 0 202 222 0 0 chr13 15278196 15278232 -86594937 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 272 248 96 25 chr13 15278244 15278442 -86594727 - L1ME3A LINE L1 -220 5950 5739 726 267 11 11 chr13 15278566 15278742 -86594427 - MER5B DNA MER1_type -1 177 2 307 275 162 6 chr13 15278743 15278980 -86594189 - L1ME3A LINE L1 -515 5649 5367 243 0 0 0 chr13 15279439 15279466 -86593703 + (T)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr13 15280682 15280714 -86592455 + AT_rich Low_complexity Low_complexity 1 32 0 1202 193 106 23 chr13 15284747 15285011 -86588158 - AluJo SINE Alu -16 286 1 2029 75 8 8 chr13 15285776 15286043 -86587126 - AluSg1 SINE Alu -9 300 34 30 69 0 0 chr13 15286694 15286752 -86586417 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr13 15286954 15286991 -86586178 + AT_rich Low_complexity Low_complexity 1 37 0 757 274 102 6 chr13 15287101 15287444 -86585725 - L1ME4a LINE L1 -264 5857 5482 387 253 140 26 chr13 15287500 15287798 -86585371 - L1ME4a LINE L1 -738 5426 5086 380 300 40 25 chr13 15287836 15287998 -86585171 + MER5A DNA MER1_type 1 179 -10 386 329 75 32 chr13 15288015 15288295 -86584874 - L1ME4a LINE L1 -1125 5021 4730 207 186 0 0 chr13 15288620 15288663 -86584506 + (CA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr13 15288817 15288841 -86584328 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 15289151 15289179 -86583990 + AT_rich Low_complexity Low_complexity 1 28 0 601 287 111 9 chr13 15290486 15290702 -86582467 - MIR SINE MIR -21 241 4 2024 133 7 3 chr13 15291199 15291493 -86581676 - AluSx SINE Alu -17 295 1 263 86 0 0 chr13 15291509 15291544 -86581625 - U2 snRNA snRNA -153 35 1 316 293 96 30 chr13 15291857 15292024 -86581145 - L1ME4a LINE L1 -1726 4420 4243 1540 179 51 4 chr13 15292715 15292988 -86580181 - AluJo SINE Alu -24 288 3 2289 95 0 0 chr13 15293019 15293350 -86579819 + AluSx SINE Alu 1 331 0 21 0 0 0 chr13 15294445 15294466 -86578703 + AT_rich Low_complexity Low_complexity 1 21 0 271 171 43 29 chr13 15294540 15294610 -86578559 - L1ME4a LINE L1 -201 5920 5850 379 234 186 14 chr13 15294668 15294813 -86578356 + MIR SINE MIR 67 236 -26 2184 188 14 55 chr13 15294877 15295383 -86577786 + MER66B LTR ERV1 2 486 0 541 287 120 29 chr13 15295388 15295782 -86577387 - L1ME4a LINE L1 -357 5764 5321 256 212 66 88 chr13 15296262 15296399 -86576770 - L1 LINE L1 -1107 5039 4906 22 35 0 0 chr13 15296427 15296456 -86576713 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr13 15296703 15296747 -86576422 + AT_rich Low_complexity Low_complexity 1 44 0 2093 108 26 23 chr13 15298008 15298313 -86574856 - AluSx SINE Alu -6 306 1 2025 130 0 0 chr13 15298404 15298681 -86574488 - AluSx SINE Alu -35 277 1 229 246 16 16 chr13 15298773 15298834 -86574335 + (TATG)n Simple_repeat Simple_repeat 2 62 0 602 269 64 6 chr13 15298890 15299061 -86574108 - MIR SINE MIR -57 205 25 25 0 0 0 chr13 15299455 15299480 -86573689 + AT_rich Low_complexity Low_complexity 1 25 0 7951 90 35 26 chr13 15300913 15302138 -86571031 - MER11B LTR ERVK 0 1236 1 366 314 37 16 chr13 15302156 15302347 -86570822 + HAL1b LINE L1 395 589 -759 7015 64 13 53 chr13 15302648 15304730 -86568439 + SVA Other Other 1 1385 -1 23 0 0 0 chr13 15304736 15304759 -86568410 + AT_rich Low_complexity Low_complexity 1 23 0 339 293 94 45 chr13 15304983 15305179 -86567990 + L1ME LINE L1 3741 3926 -2220 2470 58 0 0 chr13 15305179 15305473 -86567696 - AluY SINE Alu -17 294 1 339 293 94 45 chr13 15305473 15305720 -86567449 + L1ME LINE L1 3926 4194 -1952 201 74 0 0 chr13 15306192 15306219 -86566950 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1775 180 0 0 chr13 15306222 15306506 -86566663 - AluJb SINE Alu -28 284 1 188 333 100 22 chr13 15306595 15306685 -86566484 - L2 LINE L2 -35 3237 3141 1676 164 3 33 chr13 15306816 15307121 -86566048 - AluSx SINE Alu -16 296 1 350 233 98 30 chr13 15307328 15307461 -86565708 + L1ME LINE L1 5536 5677 -444 366 263 12 0 chr13 15307516 15307596 -86565573 + Tigger3(Golem) DNA MER2_type 2 82 -2947 193 0 94 0 chr13 15307622 15307654 -86565515 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8482 49 5 222 chr13 15307659 15309402 -86563767 - SVA Other Other -1 1385 21 1684 137 59 0 chr13 15309406 15309676 -86563493 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 286 287 58 0 chr13 15309960 15310047 -86563122 - LTR50 LTR ERVL -703 92 1 337 178 117 84 chr13 15310254 15310446 -86562723 + HAL1b LINE L1 1163 6120 -1 485 247 56 28 chr13 15310903 15311081 -86562088 - L1MC5 LINE L1 -50 7980 7798 1250 170 32 36 chr13 15311140 15311393 -86561776 - AluJo SINE Alu -12 300 49 2349 246 127 51 chr13 15311401 15311595 -86561574 - L1MC5 LINE L1 -385 7645 7467 1855 149 16 3 chr13 15311595 15311903 -86561266 - AluJb SINE Alu 0 312 1 2349 246 127 51 chr13 15311903 15313622 -86559547 - L1MC5 LINE L1 -563 7467 5550 445 259 18 24 chr13 15313619 15313789 -86559380 - L1MC5 LINE L1 -3742 2473 2305 * 754 200 39 19 chr13 15313789 15313944 -86559225 + FRAM SINE Alu 1 155 -21 29 0 0 0 chr13 15313945 15313974 -86559195 + AT_rich Low_complexity Low_complexity 1 29 0 461 158 110 16 chr13 15314028 15314155 -86559014 - L1MC5 LINE L1 -4078 2318 2180 2019 251 85 50 chr13 15314211 15315356 -86557813 - L1MC5 LINE L1 -4370 2026 842 1121 265 78 52 chr13 15315356 15315892 -86557277 - L1MC5 LINE L1 -5825 571 22 9634 87 5 4 chr13 15315970 15318096 -86555073 - L1PA8 LINE L1 -18 6154 4027 348 278 126 63 chr13 15318386 15318609 -86554560 + L2 LINE L2 2962 3198 -115 24 0 0 0 chr13 15318944 15318968 -86554201 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 15319717 15319741 -86553428 + AT_rich Low_complexity Low_complexity 1 24 0 264 30 0 0 chr13 15321009 15321042 -86552127 + (CA)n Simple_repeat Simple_repeat 2 34 0 1998 128 3 0 chr13 15321046 15321334 -86551835 - AluSx SINE Alu -7 305 17 538 279 134 23 chr13 15321476 15321879 -86551290 - MLT1J2 LTR MaLR -2 444 1 24 91 0 0 chr13 15322049 15322115 -86551054 + AT_rich Low_complexity Low_complexity 1 66 0 242 189 42 42 chr13 15322890 15322985 -86550184 - L1MDa LINE L1 -3998 2217 2123 329 356 37 21 chr13 15322994 15323185 -86549984 - L1MDa LINE L1 -4273 2123 1930 603 322 57 13 chr13 15323271 15323749 -86549420 - L1MDa LINE L1 -4640 1756 1258 628 325 43 9 chr13 15324959 15325304 -86547865 - L1ME3A LINE L1 -219 5951 5595 536 233 42 130 chr13 15325646 15325699 -86547470 - L1 LINE L1 -942 5204 5148 2074 114 0 7 chr13 15325699 15325998 -86547171 - AluSx SINE Alu -15 297 1 536 233 42 130 chr13 15325998 15326275 -86546894 - L1 LINE L1 -998 5148 4903 339 269 171 17 chr13 15327167 15327401 -86545768 - HAL1 LINE L1 -910 1597 1328 24 32 0 0 chr13 15328501 15328532 -86544637 + AT_rich Low_complexity Low_complexity 1 31 0 387 0 0 0 chr13 15328724 15328767 -86544402 + (TG)n Simple_repeat Simple_repeat 2 44 0 722 233 33 74 chr13 15330216 15330486 -86542683 + MIR SINE MIR 3 261 -1 30 27 0 0 chr13 15330988 15331025 -86542144 + AT_rich Low_complexity Low_complexity 1 37 0 760 298 4 26 chr13 15331082 15331310 -86541859 + MIR SINE MIR 12 234 -28 1781 164 42 8 chr13 15332539 15332892 -86540277 - MLT1A1 LTR MaLR 0 365 1 3185 174 24 35 chr13 15333312 15333972 -86539197 + MER82 DNA MER2_type 1 653 0 904 80 0 0 chr13 15334517 15334630 -86538539 + AluSg/x SINE Alu 186 298 -11 942 107 14 7 chr13 15336234 15336374 -86536795 - AluSq/x SINE Alu -172 141 1 293 195 0 6 chr13 15336863 15336926 -86536243 + FLAM SINE Alu 76 127 -6 1084 259 171 36 chr13 15336935 15337490 -86535679 + HAL1 LINE L1 241 870 -1637 694 237 43 61 chr13 15337495 15337774 -86535395 + HAL1 LINE L1 788 1061 -1446 267 54 0 0 chr13 15337794 15337831 -86535338 + (CA)n Simple_repeat Simple_repeat 2 38 0 226 263 15 86 chr13 15337838 15338036 -86535133 + HAL1 LINE L1 1758 1941 -566 261 57 0 0 chr13 15338036 15338071 -86535098 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1714 108 13 0 chr13 15338080 15338311 -86534858 - AluSp SINE Alu -36 277 44 502 151 0 43 chr13 15338537 15338630 -86534539 + FLAM_C SINE Alu 47 135 -8 858 238 76 39 chr13 15339470 15339827 -86533342 - L1MC5 LINE L1 -426 7535 7166 30 83 0 0 chr13 15340369 15340441 -86532728 + AT_rich Low_complexity Low_complexity 1 72 0 2424 69 0 3 chr13 15340754 15341059 -86532110 - AluY SINE Alu -7 304 1 257 299 16 136 chr13 15342707 15342891 -86530278 - MER5B DNA MER1_type -7 171 10 185 244 35 70 chr13 15342926 15343012 -86530157 + L2 LINE L2 2888 2959 -313 1815 151 10 20 chr13 15343596 15343895 -86529274 + AluSx SINE Alu 1 296 -16 229 261 145 0 chr13 15344142 15344211 -86528958 - L2 LINE L2 -15 3257 3179 2149 178 47 34 chr13 15344796 15345263 -86527906 + MLT2B2 LTR ERVL 4 476 -39 243 301 0 14 chr13 15345265 15345338 -86527831 + (TA)n Simple_repeat Simple_repeat 1 72 0 354 272 53 35 chr13 15346460 15346574 -86526595 + L2 LINE L2 3156 3271 -1 1563 193 0 37 chr13 15347183 15347479 -86525690 + AluJb SINE Alu 1 285 -27 275 241 89 27 chr13 15348186 15348298 -86524871 - L1MC5 LINE L1 -44 7917 7799 215 278 133 11 chr13 15349093 15349183 -86523986 - MER91C DNA MER1_type -1 139 39 21 0 0 0 chr13 15350844 15350865 -86522304 + AT_rich Low_complexity Low_complexity 1 21 0 339 181 236 0 chr13 15350902 15350974 -86522195 - Tigger5 DNA MER2_type -1 2322 2234 1260 161 22 0 chr13 15351099 15351329 -86521840 - L1MA4 LINE L1 0 6300 6066 2024 112 11 3 chr13 15351336 15351623 -86521546 + AluSx SINE Alu 5 293 -19 911 186 54 14 chr13 15351774 15351995 -86521174 - MER20B DNA MER1_type -1 782 553 1789 221 93 41 chr13 15352242 15352803 -86520366 - L1ME2 LINE L1 -121 6043 5454 2001 113 28 7 chr13 15353004 15353295 -86519874 - AluSx SINE Alu -15 297 1 2154 122 3 0 chr13 15353302 15353606 -86519563 - AluSp SINE Alu -8 305 1 22 35 0 0 chr13 15353808 15353837 -86519332 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr13 15354067 15354111 -86519058 + AT_rich Low_complexity Low_complexity 1 44 0 197 271 224 28 chr13 15354530 15354637 -86518532 + L2 LINE L2 3138 3265 -7 2195 103 0 3 chr13 15354818 15355108 -86518061 + AluY SINE Alu 1 289 -22 1698 167 21 0 chr13 15355644 15355926 -86517243 - AluJo SINE Alu -24 288 1 1712 154 28 18 chr13 15356488 15356773 -86516396 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr13 15357667 15357688 -86515481 + AT_rich Low_complexity Low_complexity 1 21 0 600 203 42 0 chr13 15359434 15359552 -86513617 + MER58B DNA MER1_type 216 338 -3 408 294 59 7 chr13 15359564 15359700 -86513469 - MIR SINE MIR -111 151 9 379 216 207 0 chr13 15359749 15359860 -86513309 + MER104 DNA Tc2 47 180 0 202 222 0 0 chr13 15361161 15361197 -86511972 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 299 273 86 15 chr13 15361209 15361407 -86511762 - L1ME3A LINE L1 -220 5950 5739 727 267 11 11 chr13 15361531 15361707 -86511462 - MER5B DNA MER1_type -1 177 2 324 269 162 6 chr13 15361708 15361945 -86511224 - L1ME3A LINE L1 -515 5649 5367 243 0 0 0 chr13 15362403 15362430 -86510739 + (T)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr13 15363646 15363678 -86509491 + AT_rich Low_complexity Low_complexity 1 32 0 1178 193 106 23 chr13 15367710 15367974 -86505195 - AluJo SINE Alu -16 286 1 1999 75 8 8 chr13 15368738 15369005 -86504164 - AluSg1 SINE Alu -9 300 34 30 69 0 0 chr13 15369656 15369714 -86503455 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr13 15369916 15369953 -86503216 + AT_rich Low_complexity Low_complexity 1 37 0 794 274 102 6 chr13 15370063 15370406 -86502763 - L1ME4a LINE L1 -264 5857 5482 393 253 140 26 chr13 15370462 15370760 -86502409 - L1ME4a LINE L1 -738 5426 5086 386 300 40 25 chr13 15370798 15370960 -86502209 + MER5A DNA MER1_type 1 179 -10 390 329 75 32 chr13 15370977 15371257 -86501912 - L1ME4a LINE L1 -1125 5021 4730 210 171 0 0 chr13 15371582 15371623 -86501546 + (CA)n Simple_repeat Simple_repeat 1 41 0 24 0 0 0 chr13 15371777 15371801 -86501368 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 15372111 15372139 -86501030 + AT_rich Low_complexity Low_complexity 1 28 0 617 282 111 9 chr13 15373446 15373662 -86499507 - MIR SINE MIR -21 241 4 1995 133 7 3 chr13 15374159 15374453 -86498716 - AluSx SINE Alu -17 295 1 262 86 0 0 chr13 15374469 15374504 -86498665 - U2 snRNA snRNA -153 35 1 317 299 96 30 chr13 15374817 15374984 -86498185 - L1ME4a LINE L1 -1726 4420 4243 1516 179 51 4 chr13 15375675 15375948 -86497221 - AluJo SINE Alu -24 288 3 2255 95 0 0 chr13 15375979 15376314 -86496855 + AluSx SINE Alu 1 335 0 23 68 0 0 chr13 15427418 15427462 -86445707 + AT_rich Low_complexity Low_complexity 1 44 0 292 341 56 8 chr13 15427484 15427610 -86445559 - L2 LINE L2 -4 3268 3137 2180 100 0 0 chr13 15428515 15428796 -86444373 - AluSx SINE Alu -31 281 1 351 0 0 0 chr13 15428802 15428841 -86444328 + (TG)n Simple_repeat Simple_repeat 2 40 0 5635 115 40 7 chr13 15428846 15429813 -86443356 - L1PA15 LINE L1 -20 6145 5151 1487 117 23 39 chr13 15430113 15430370 -86442799 + Tigger7 DNA MER2_type 2239 2491 0 288 361 107 50 chr13 15430370 15430708 -86442461 - L2 LINE L2 -6 3266 2910 415 195 11 17 chr13 15430779 15430887 -86442282 - AluJb SINE Alu -112 190 122 335 320 157 28 chr13 15431959 15432284 -86440885 + L2 LINE L2 2424 2790 -524 576 306 73 7 chr13 15432556 15432775 -86440394 + MIR SINE MIR 33 262 0 276 313 12 12 chr13 15432838 15432918 -86440251 + L2 LINE L2 3220 3299 -14 243 179 0 0 chr13 15433724 15433791 -86439378 + T-rich Low_complexity Low_complexity 1 67 0 2054 108 0 26 chr13 15434793 15435098 -86438071 + AluSx SINE Alu 1 297 -15 212 184 0 0 chr13 15435999 15436037 -86437132 + T-rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 15437089 15437111 -86436058 + AT_rich Low_complexity Low_complexity 1 22 0 2364 49 18 0 chr13 15437921 15438207 -86434962 - AluY SINE Alu -20 291 1 302 283 117 7 chr13 15438923 15439068 -86434101 + L1MC4a LINE L1 5735 5895 -1913 4551 118 34 10 chr13 15439297 15440084 -86433085 - L1PA16 LINE L1 -2 6164 5321 1305 270 73 74 chr13 15441072 15441392 -86431777 - L2 LINE L2 -423 2891 2572 576 168 0 18 chr13 15441392 15441505 -86431664 - HY1 scRNA scRNA -1 111 1 1305 270 73 74 chr13 15441505 15441900 -86431269 - L2 LINE L2 -742 2572 2177 476 289 34 44 chr13 15441915 15442119 -86431050 - L2 LINE L2 -20 3293 3092 24 53 0 0 chr13 15442217 15442255 -86430914 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 15442564 15442593 -86430576 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 15442641 15442662 -86430507 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 238 167 17 17 chr13 15442804 15442864 -86430305 + T-rich Low_complexity Low_complexity 5 64 0 1825 143 7 0 chr13 15443547 15443850 -86429319 - AluSx SINE Alu 0 308 4 191 342 154 0 chr13 15444001 15444118 -86429051 - L3 LINE CR1 -11 1566 1432 21 57 0 0 chr13 15444618 15444653 -86428516 + AT_rich Low_complexity Low_complexity 1 35 0 349 310 29 56 chr13 15445023 15445364 -86427805 + L1M4 LINE L1 3809 4140 -2006 1638 140 20 98 chr13 15446040 15446446 -86426723 - MLT1A2 LTR MaLR 0 374 1 2222 106 13 0 chr13 15446469 15446772 -86426397 + AluSx SINE Alu 4 310 -2 2168 70 0 70 chr13 15446772 15447087 -86426082 + AluY SINE Alu 1 294 -17 250 292 162 26 chr13 15449919 15450073 -86423096 - L3b LINE CR1 -139 1444 1270 246 244 171 0 chr13 15450246 15450328 -86422841 - L2 LINE L2 -17 3296 3201 273 303 175 52 chr13 15450698 15450909 -86422260 - L2 LINE L2 -706 2608 2372 1985 136 3 7 chr13 15451759 15452054 -86421115 - AluSx SINE Alu -18 294 1 198 0 0 0 chr13 15453049 15453071 -86420098 + (T)n Simple_repeat Simple_repeat 1 22 0 222 118 0 0 chr13 15455291 15455325 -86417844 + (T)n Simple_repeat Simple_repeat 1 34 0 668 243 43 51 chr13 15456264 15456519 -86416650 - L2 LINE L2 0 3313 3061 968 275 96 8 chr13 15456526 15457112 -86416057 - L1MEc LINE L1 -3692 2848 2252 482 271 103 47 chr13 15457237 15457612 -86415557 - L1MEc LINE L1 -4812 1774 1333 1888 118 43 11 chr13 15457612 15457892 -86415277 + AluSx SINE Alu 7 295 -17 482 271 103 47 chr13 15457892 15457998 -86415171 - L1MEc LINE L1 -5253 1333 1234 1124 317 66 22 chr13 15458400 15459059 -86414110 - L2 LINE L2 -231 3082 2387 397 329 176 10 chr13 15459286 15459599 -86413570 + L2 LINE L2 2329 2693 -621 192 77 0 0 chr13 15459626 15459652 -86413517 + (CAG)n Simple_repeat Simple_repeat 1 26 0 1756 143 61 7 chr13 15460111 15460405 -86412764 - AluSx SINE Alu -2 310 1 309 340 174 14 chr13 15460717 15460999 -86412170 - L1 LINE L1 -2275 3871 3545 531 169 123 8 chr13 15461590 15461720 -86411449 + MER104 DNA Tc2 27 171 -9 454 281 113 65 chr13 15461726 15462036 -86411133 - L1ME2 LINE L1 -332 5832 5508 448 311 113 40 chr13 15462067 15462571 -86410598 - L1ME2 LINE L1 -1170 4976 4436 583 296 180 11 chr13 15462743 15463216 -86409953 - L1 LINE L1 -2690 3456 2904 238 321 121 5 chr13 15463535 15463750 -86409419 - L1 LINE L1 -3595 2551 2312 1528 122 18 0 chr13 15464887 15465109 -86408060 - AluSx SINE Alu -18 294 69 458 103 0 0 chr13 15465142 15465210 -86407959 - AluSx SINE Alu -245 68 1 325 293 24 10 chr13 15465406 15465521 -86407648 + MIR SINE MIR 43 161 -63 1679 197 0 13 chr13 15466223 15466533 -86406636 - AluJo SINE Alu -4 308 3 452 257 46 4 chr13 15467891 15468078 -86405091 + MIR SINE MIR 1 259 -3 1232 215 158 48 chr13 15468090 15468532 -86404637 - L2 LINE L2 -419 2895 2405 1923 129 11 7 chr13 15470009 15470296 -86402873 - AluJo SINE Alu -14 298 11 483 273 195 0 chr13 15470543 15470697 -86402472 + MER5A DNA MER1_type 6 189 0 637 291 94 5 chr13 15470845 15471048 -86402121 - MIR SINE MIR -14 248 28 203 289 0 0 chr13 15471374 15471419 -86401750 + L2 LINE L2 3261 3305 -8 1960 261 65 35 chr13 15471465 15471736 -86401433 + L2 LINE L2 2329 2590 -723 1827 138 48 75 chr13 15471736 15472135 -86401034 - MLT1B LTR MaLR -2 388 1 1960 261 65 35 chr13 15472135 15472812 -86400357 + L2 LINE L2 2590 3313 0 359 297 18 27 chr13 15472812 15472923 -86400246 - MIR SINE MIR -63 145 36 2230 110 0 10 chr13 15473037 15473338 -86399831 - AluSp SINE Alu -15 298 1 28 61 0 0 chr13 15473498 15473547 -86399622 + AT_rich Low_complexity Low_complexity 1 49 0 842 209 221 8 chr13 15473671 15473924 -86399245 - HAL1 LINE L1 -607 1900 1594 407 256 23 16 chr13 15476011 15476140 -86397029 + L1ME4a LINE L1 5725 5854 -267 332 197 15 0 chr13 15476148 15476214 -86396955 - MER116 DNA Mariner -12 68 2 400 173 90 0 chr13 15476309 15476401 -86396768 - MIR SINE MIR -49 213 115 2419 98 0 0 chr13 15476987 15477294 -86395875 + AluSx SINE Alu 1 307 -5 468 78 31 0 chr13 15477790 15477854 -86395315 + L1MB8 LINE L1 6104 6169 -9 223 197 0 30 chr13 15477855 15477921 -86395248 + (TA)n Simple_repeat Simple_repeat 1 64 0 748 309 70 25 chr13 15477994 15478522 -86394647 + L1ME2 LINE L1 4483 5034 -1112 2534 66 0 0 chr13 15478527 15478829 -86394340 + AluY SINE Alu 1 302 -9 1189 172 29 10 chr13 15478833 15479042 -86394127 + AluJb SINE Alu 86 298 -14 952 270 105 6 chr13 15479043 15479671 -86393498 + L1ME2 LINE L1 5036 5722 -448 344 204 59 22 chr13 15479683 15479800 -86393369 + L1ME2 LINE L1 5844 5962 -208 226 220 0 0 chr13 15479823 15479873 -86393296 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 3674 147 22 48 chr13 15480713 15481835 -86391334 + L1MA9 LINE L1 4676 5793 -519 242 202 47 8 chr13 15481838 15481967 -86391202 + (TA)n Simple_repeat Simple_repeat 1 134 0 3127 138 38 4 chr13 15481978 15482485 -86390684 + L1MA9 LINE L1 5789 6312 0 321 100 0 0 chr13 15482646 15482696 -86390473 + (TC)n Simple_repeat Simple_repeat 2 51 0 543 30 69 20 chr13 15483931 15484032 -86389137 + GA-rich Low_complexity Low_complexity 2 107 0 1703 74 0 5 chr13 15484235 15484450 -86388719 + AluY SINE Alu 83 296 -15 281 317 20 0 chr13 15484474 15484575 -86388594 + MIR3 SINE MIR 77 179 -29 495 222 152 33 chr13 15485364 15485601 -86387568 - MLT1L LTR MaLR -4 597 349 225 0 0 0 chr13 15485640 15485665 -86387504 + (TG)n Simple_repeat Simple_repeat 2 26 0 3774 183 105 15 chr13 15486767 15487099 -86386070 - L1MB7 LINE L1 -30 6154 5853 2255 194 48 34 chr13 15487099 15487494 -86385675 - MLT1D LTR MaLR 0 505 100 1312 196 45 31 chr13 15487494 15487780 -86385389 + AluJb SINE Alu 1 290 -22 2255 194 48 34 chr13 15487780 15487880 -86385289 - MLT1D LTR MaLR -405 100 3 3774 183 105 15 chr13 15487880 15488075 -86385094 - L1MB7 LINE L1 -331 5853 5677 195 42 0 0 chr13 15488075 15488099 -86385070 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1944 61 20 4 chr13 15488099 15488344 -86384825 - AluY SINE Alu -32 279 31 3774 183 105 15 chr13 15488344 15488789 -86384380 - L1MB7 LINE L1 -506 5678 5093 2220 114 10 3 chr13 15488880 15489187 -86383982 + AluSc SINE Alu 1 309 0 347 167 50 0 chr13 15491325 15491385 -86381784 - U6 snRNA snRNA -44 63 1 671 289 72 30 chr13 15491454 15491779 -86381390 + L2 LINE L2 2692 3022 -291 1267 167 83 34 chr13 15491779 15492043 -86381126 + AluJo SINE Alu 1 277 -35 222 62 0 0 chr13 15492048 15492080 -86381089 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4235 127 51 9 chr13 15492152 15492819 -86380350 - L1PA16 LINE L1 0 6166 5472 412 316 120 45 chr13 15493004 15493270 -86379899 + L1MA9 LINE L1 1493 1778 -5390 5394 179 43 46 chr13 15493354 15493845 -86379324 + L1MA9 LINE L1 3131 3622 -3711 1756 89 31 9 chr13 15493845 15494069 -86379100 + MER30 DNA MER1_type 2 230 0 5394 179 43 46 chr13 15494069 15495655 -86377514 + L1MA9 LINE L1 3622 5211 -2122 2192 82 67 0 chr13 15495655 15495937 -86377232 - AluSc SINE Alu -8 301 1 5394 179 43 46 chr13 15495937 15497201 -86375968 + L1MA9 LINE L1 5211 7214 -119 2009 118 14 0 chr13 15497201 15497519 -86375650 - AluSq SINE Alu 0 322 1 5394 179 43 46 chr13 15497519 15497639 -86375530 + L1MA9 LINE L1 7214 7333 0 183 42 0 0 chr13 15497920 15497944 -86375225 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 28 0 0 0 chr13 15498004 15498032 -86375137 + AT_rich Low_complexity Low_complexity 1 28 0 262 324 68 34 chr13 15498069 15498245 -86374924 - MIR SINE MIR -61 201 20 2187 111 3 10 chr13 15498310 15498608 -86374561 - AluSq SINE Alu -13 300 5 247 215 75 54 chr13 15498623 15498716 -86374453 - MARNA DNA Mariner -374 212 118 2214 92 3 30 chr13 15498814 15499117 -86374052 + AluSg SINE Alu 1 295 -15 241 0 0 0 chr13 15500115 15500142 -86373027 - AluY SINE Alu -258 42 16 676 198 64 43 chr13 15500484 15500671 -86372498 - MIR SINE MIR -2 260 70 207 146 0 0 chr13 15500762 15500803 -86372366 + (TG)n Simple_repeat Simple_repeat 1 41 0 287 194 167 111 chr13 15500809 15500917 -86372252 + L2 LINE L2 3156 3269 -3 413 209 22 14 chr13 15501588 15501727 -86371442 + (TATATG)n Simple_repeat Simple_repeat 1 140 0 * 765 189 0 0 chr13 15501693 15501862 -86371307 + (TG)n Simple_repeat Simple_repeat 2 170 0 632 210 115 0 chr13 15502515 15502672 -86370497 + MER104 DNA MER2_type 5 179 -1 196 289 75 44 chr13 15502768 15502927 -86370242 + L2 LINE L2 2890 3053 -219 453 112 11 56 chr13 15503211 15503300 -86369869 - L1MA10 LINE L1 0 6334 6250 1233 129 78 0 chr13 15503402 15503595 -86369574 - MER2 DNA MER2_type -135 210 3 3291 144 78 93 chr13 15503595 15504126 -86369043 + LTR8 LTR ERV1 1 521 -170 2185 132 0 0 chr13 15504126 15504436 -86368733 + AluSx SINE Alu 3 312 0 3291 144 78 93 chr13 15504436 15504605 -86368564 + LTR8 LTR ERV1 521 691 0 2986 146 111 49 chr13 15504605 15505174 -86367995 + HUERS-P1 LTR ERV1 1 533 -5730 321 68 0 0 chr13 15505174 15505218 -86367951 + (TG)n Simple_repeat Simple_repeat 1 44 0 2986 146 111 49 chr13 15505218 15505742 -86367427 + HUERS-P1 LTR ERV1 533 1246 -5017 1168 158 8 66 chr13 15505808 15506049 -86367120 - LTR8 LTR ERV1 -460 231 5 236 243 114 0 chr13 15506053 15506123 -86367046 - L1MA10 LINE L1 -88 6246 6169 2294 91 7 3 chr13 15506290 15506586 -86366583 + AluSq SINE Alu 1 297 -16 2034 103 156 16 chr13 15507111 15507617 -86365552 - MER4B LTR ERV1 0 694 1 530 267 188 19 chr13 15508622 15509008 -86364161 - L2 LINE L2 -49 3264 2770 2830 254 67 18 chr13 15509079 15510044 -86363125 - L1ME3A LINE L1 -5 6234 5219 5673 230 41 26 chr13 15510086 15510148 -86363021 - L1MEc LINE L1 -2489 3726 3666 2061 143 3 3 chr13 15510148 15510455 -86362714 - AluSx SINE Alu -1 311 5 5673 230 41 26 chr13 15510455 15512254 -86360915 - L1MEc LINE L1 -2549 3666 1881 745 141 16 0 chr13 15512407 15512535 -86360634 + HSMAR2 DNA Mariner 2 131 -1171 * 5941 139 21 12 chr13 15512532 15513483 -86359686 + HSMAR2 DNA Mariner 343 1302 0 350 310 121 41 chr13 15513659 15513949 -86359220 + L2 LINE L2 2059 2371 -943 1068 118 27 43 chr13 15514206 15514393 -86358776 + MER20 DNA MER1_type 36 219 0 444 245 7 53 chr13 15514406 15514504 -86358665 - MER69 DNA AcHobo -1 2525 2435 2196 117 0 3 chr13 15514504 15514813 -86358356 - AluSx SINE Alu -4 308 1 444 245 7 53 chr13 15514813 15514865 -86358304 - MER69 DNA AcHobo -91 2435 2382 * 2031 172 5 33 chr13 15514830 15515197 -86357972 - MLT1A1 LTR MaLR -8 357 1 363 169 0 0 chr13 15515369 15515428 -86357741 - MER69 DNA AcHobo -2467 59 1 279 224 0 0 chr13 15515536 15515612 -86357557 + (TG)n Simple_repeat Simple_repeat 2 77 0 1859 163 7 0 chr13 15517398 15517699 -86355470 - AluSx SINE Alu -9 303 1 540 208 24 24 chr13 15517807 15517967 -86355202 - MER5A DNA MER1_type -25 153 3 2000 133 3 23 chr13 15518533 15518871 -86354298 - AluSx SINE Alu 0 312 1 210 261 0 0 chr13 15519956 15520002 -86353167 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 1865 131 68 18 chr13 15520012 15520349 -86352820 + MER46B DNA MER2_type 2 230 -6 294 73 0 0 chr13 15520351 15520392 -86352777 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr13 15520427 15520451 -86352718 + (CA)n Simple_repeat Simple_repeat 1 24 0 1956 250 110 20 chr13 15520542 15521086 -86352083 + MLT1E LTR MaLR 1 593 0 2682 120 5 10 chr13 15521089 15521497 -86351672 - MER65A LTR ERV1 0 445 40 1250 87 46 25 chr13 15521511 15521707 -86351462 - MSTA LTR MaLR -228 200 1 240 154 0 0 chr13 15522000 15522039 -86351130 - MER65A LTR ERV1 -406 39 1 2111 129 7 7 chr13 15522407 15522717 -86350452 - AluSp SINE Alu -3 310 1 1732 162 7 33 chr13 15522926 15523228 -86349941 + AluJo SINE Alu 6 299 -13 626 324 45 11 chr13 15523329 15523646 -86349523 - L2 LINE L2 -26 3246 2919 2000 93 3 64 chr13 15525104 15525415 -86347754 - AluSc SINE Alu -17 292 1 2258 116 3 7 chr13 15525757 15526067 -86347102 - AluSx SINE Alu -3 309 1 2273 110 0 3 chr13 15526657 15526958 -86346211 + AluSx SINE Alu 1 300 -12 281 228 22 11 chr13 15528307 15528399 -86344770 + MIR3 SINE MIR 109 201 -7 258 361 93 39 chr13 15529468 15529778 -86343391 - L2 LINE L2 -1 3271 2945 1057 273 54 97 chr13 15529918 15530570 -86342599 + L1MEd LINE L1 8 631 -5488 386 285 153 8 chr13 15530911 15531153 -86342016 + L2 LINE L2 1763 2039 -1275 525 339 56 28 chr13 15531225 15531547 -86341622 + L2 LINE L2 2584 2914 -400 578 242 0 17 chr13 15531628 15531748 -86341421 - FLAM_A SINE Alu -15 127 10 423 228 25 21 chr13 15531786 15531944 -86341225 + L1MC4 LINE L1 7017 7256 -632 432 0 0 0 chr13 15531944 15531992 -86341177 + (TA)n Simple_repeat Simple_repeat 2 49 0 351 0 0 0 chr13 15532009 15532048 -86341121 + (CA)n Simple_repeat Simple_repeat 2 40 0 315 0 0 0 chr13 15532109 15532144 -86341025 + (CA)n Simple_repeat Simple_repeat 2 36 0 336 236 69 34 chr13 15532201 15532324 -86340845 + L1MC4 LINE L1 6507 6644 -1191 1007 236 57 74 chr13 15532334 15532808 -86340361 + L1MC4 LINE L1 7265 7730 -312 724 232 72 55 chr13 15532869 15533214 -86339955 + L1MC4 LINE L1 7691 8041 -1 * 1171 221 26 7 chr13 15533190 15533461 -86339708 + L1MC3 LINE L1 6456 6731 -1054 2473 174 118 32 chr13 15533885 15534454 -86338715 + L1MC3 LINE L1 6716 7333 -452 585 220 66 16 chr13 15534433 15534615 -86338554 + L1MC3 LINE L1 7593 7783 -2 * 416 327 90 18 chr13 15534653 15534876 -86338293 + L2 LINE L2 3031 3269 -3 246 333 36 0 chr13 15535349 15535433 -86337736 + L2 LINE L2 3200 3286 -27 1905 143 34 47 chr13 15535433 15535817 -86337352 + MLT1B LTR MaLR 1 379 -11 211 302 62 0 chr13 15535966 15536062 -86337107 - MER5A DNA MER1_type -79 110 9 22 56 0 0 chr13 15536802 15536838 -86336331 + AT_rich Low_complexity Low_complexity 1 36 0 283 254 45 45 chr13 15538459 15538569 -86334600 + LTR67 LTR ERVL 340 449 -108 184 323 102 62 chr13 15538629 15538951 -86334218 + L2 LINE L2 1658 1992 -1322 237 247 68 14 chr13 15539430 15539503 -86333666 - MLT1J LTR MaLR -340 171 95 438 308 85 48 chr13 15539573 15540054 -86333115 + L2 LINE L2 2010 2508 -806 1935 220 24 15 chr13 15540376 15540551 -86332618 + MLT1C LTR MaLR 1 173 -294 1648 185 50 0 chr13 15540551 15540848 -86332321 + AluJo SINE Alu 1 312 0 1935 220 24 15 chr13 15540848 15541135 -86332034 + MLT1C LTR MaLR 173 467 0 237 302 32 0 chr13 15541416 15541479 -86331690 + L2 LINE L2 3111 3175 -97 183 318 30 0 chr13 15542322 15542388 -86330781 + L2 LINE L2 2992 3059 -213 2542 119 16 0 chr13 15542683 15543052 -86330117 - THE1C LTR MaLR 0 375 1 240 243 87 78 chr13 15543098 15543304 -86329865 + Tigger1 DNA MER2_type 879 1086 -1332 21 0 0 0 chr13 15543597 15543618 -86329551 + AT_rich Low_complexity Low_complexity 1 21 0 3067 78 45 2 chr13 15543658 15544084 -86329085 + MLT2A1 LTR ERVL 1 444 0 576 283 12 23 chr13 15544240 15544413 -86328756 - MER5B DNA MER1_type -7 171 1 1386 196 0 51 chr13 15544446 15544757 -86328412 + AluJo SINE Alu 1 295 -17 420 313 42 10 chr13 15545421 15545613 -86327556 + MIR SINE MIR 11 208 -54 8250 12 0 0 chr13 15545645 15547176 -86325993 - L1HS LINE L1 -1 6154 4624 493 335 28 9 chr13 15547197 15547412 -86325757 + L1MEc LINE L1 503 721 -6104 1562 203 25 30 chr13 15547800 15548164 -86325005 + MLT1A1 LTR MaLR 1 362 -3 1120 287 50 36 chr13 15548234 15548921 -86324248 + L1MEc LINE L1 1024 1660 -4882 1878 260 96 28 chr13 15548953 15549849 -86323320 + L1MEc LINE L1 1994 2950 -3875 336 283 41 7 chr13 15549865 15550010 -86323159 + L1MEc LINE L1 3781 3930 -2714 2166 124 10 0 chr13 15550014 15550320 -86322849 + AluSg SINE Alu 1 309 -1 1493 278 117 34 chr13 15550353 15550997 -86322172 + HERV16 LTR ERVL 596 1292 -3704 5384 242 36 58 chr13 15551157 15551795 -86321374 + HERV16 LTR ERVL 1592 2242 -2754 2251 96 3 0 chr13 15551795 15552086 -86321083 + AluSq SINE Alu 1 292 -21 5384 242 36 58 chr13 15552086 15552218 -86320951 + HERV16 LTR ERVL 2242 2375 -2621 1727 157 34 14 chr13 15552218 15552511 -86320658 + AluJo SINE Alu 5 303 -9 5384 242 36 58 chr13 15552511 15553277 -86319892 + HERV16 LTR ERVL 2375 3096 -1900 534 291 11 6 chr13 15553365 15553540 -86319629 + HERV16 LTR ERVL 5175 5350 -304 704 282 13 21 chr13 15553641 15553973 -86319196 + LTR16A LTR ERVL 18 401 -49 882 300 101 39 chr13 15554103 15554640 -86318529 + HERV16 LTR ERVL 2048 2617 -2379 1542 181 19 4 chr13 15554714 15554979 -86318190 + MLT1A1 LTR MaLR 1 269 -96 402 322 34 7 chr13 15554979 15555125 -86318044 + HERV16 LTR ERVL 2778 2927 -2837 2973 317 63 34 chr13 15555159 15556700 -86316469 + HERV16 LTR ERVL 3224 4808 -956 1422 296 35 19 chr13 15556762 15557245 -86315924 + LTR16C LTR ERVL 1 491 0 702 280 19 56 chr13 15560016 15560160 -86313009 - MIR SINE MIR 0 262 131 2499 88 3 0 chr13 15560160 15560468 -86312701 + AluSg SINE Alu 1 309 -1 702 280 19 56 chr13 15560468 15560591 -86312578 - MIR SINE MIR -131 131 5 217 205 0 0 chr13 15560612 15560651 -86312518 + (CCCA)n Simple_repeat Simple_repeat 4 42 0 267 308 26 0 chr13 15561184 15561262 -86311907 + MIR3 SINE MIR 108 187 -21 529 234 111 18 chr13 15561822 15561993 -86311176 - MIR SINE MIR 0 262 76 1870 127 51 0 chr13 15562434 15562710 -86310459 + AluSx SINE Alu 1 290 -22 876 110 79 6 chr13 15563353 15563517 -86309652 - L1MA6 LINE L1 -4 6296 6121 188 282 214 0 chr13 15563517 15563620 -86309549 + L3 LINE CR1 524 648 -929 28 29 0 0 chr13 15563687 15563722 -86309447 + AT_rich Low_complexity Low_complexity 1 35 0 589 269 115 61 chr13 15563812 15564497 -86308672 - L1MC5 LINE L1 -78 7883 7247 1617 166 26 62 chr13 15565135 15565442 -86307727 - AluJo SINE Alu -16 296 1 1566 174 113 64 chr13 15565620 15566027 -86307142 - MER51A LTR ERV1 0 634 208 1406 238 111 2 chr13 15566990 15567439 -86305730 - MER114 LTR ERV 0 648 151 1002 145 0 0 chr13 15567458 15567610 -86305559 - AluSg/x SINE Alu -12 300 149 2169 314 35 10 chr13 15567712 15568701 -86304468 - ERVL LTR ERVL -1412 4352 3292 1206 299 41 19 chr13 15568720 15569223 -86303946 - ERVL LTR ERVL -1913 3083 2666 576 321 38 52 chr13 15569257 15569818 -86303351 - ERVL LTR ERVL -2639 2357 1969 570 263 47 6 chr13 15569833 15570004 -86303165 + L1MD2 LINE L1 6165 6342 -17 204 67 0 0 chr13 15570119 15570149 -86303020 + (CA)n Simple_repeat Simple_repeat 1 30 0 191 272 99 25 chr13 15572082 15572163 -86301006 - L2 LINE L2 -50 3222 3136 207 0 0 0 chr13 15572377 15572400 -86300769 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr13 15572497 15572526 -86300643 + AT_rich Low_complexity Low_complexity 1 29 0 293 365 48 8 chr13 15572554 15572680 -86300489 + L2 LINE L2 3138 3268 -4 1137 251 30 14 chr13 15572751 15573046 -86300123 - MLT1I LTR MaLR -3 406 107 574 182 0 15 chr13 15573278 15573410 -86299759 + CT-rich Low_complexity Low_complexity 2 131 0 1467 172 0 38 chr13 15573416 15573683 -86299486 - AluJo SINE Alu -55 257 1 222 150 0 0 chr13 15574016 15574056 -86299113 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 297 169 185 0 chr13 15574394 15574459 -86298710 + MLT1C LTR MaLR 6 82 -385 3410 136 23 59 chr13 15574460 15575109 -86298060 + L1MA7 LINE L1 5656 6281 -10 496 171 24 81 chr13 15575128 15575251 -86297918 + MLT1C LTR MaLR 67 182 -285 357 62 0 0 chr13 15575256 15575304 -86297865 + (CA)n Simple_repeat Simple_repeat 2 49 0 417 206 11 11 chr13 15575379 15575471 -86297698 + MLT1C LTR MaLR 376 467 0 1085 214 24 36 chr13 15576030 15576282 -86296887 - MIR SINE MIR -3 259 11 279 191 29 0 chr13 15576313 15576381 -86296788 + MER116 DNA Mariner 11 80 0 496 295 9 71 chr13 15576501 15576711 -86296458 + MIR SINE MIR 22 218 -44 2205 128 0 0 chr13 15577583 15577881 -86295288 + AluSx SINE Alu 1 298 -14 1887 201 66 43 chr13 15577985 15578473 -86294696 - MLT1D LTR MaLR -5 500 2 27 62 0 0 chr13 15578897 15578945 -86294224 + AT_rich Low_complexity Low_complexity 1 48 0 225 283 0 0 chr13 15579002 15579062 -86294107 - L1ME4a LINE L1 -88 6033 5974 551 284 148 42 chr13 15579108 15579342 -86293827 + L2 LINE L2 2841 3128 -185 1892 156 70 25 chr13 15579342 15579700 -86293469 - MLT1A2 LTR MaLR 0 374 1 551 284 148 42 chr13 15579700 15579824 -86293345 + L2 LINE L2 3128 3237 -76 303 307 10 10 chr13 15580187 15580288 -86292881 - MIR SINE MIR -74 134 34 1851 183 7 0 chr13 15581445 15581746 -86291423 - AluJo SINE Alu -9 303 1 718 275 160 47 chr13 15581753 15582196 -86290973 + MLT1H LTR MaLR 37 529 -20 336 237 59 44 chr13 15582204 15582339 -86290830 + MER65B LTR ERV1 1 137 -394 777 283 59 110 chr13 15582789 15583179 -86289990 + MLT1L LTR MaLR 110 584 -31 402 287 144 23 chr13 15583258 15583432 -86289737 + MIR3 SINE MIR 7 201 -7 2169 110 10 3 chr13 15584590 15584890 -86288279 - AluSq SINE Alu -11 302 1 240 111 0 0 chr13 15585426 15585471 -86287698 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 2096 115 3 3 chr13 15585722 15586032 -86287137 + AluSq SINE Alu 1 310 0 196 42 0 0 chr13 15586008 15586067 -86287102 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1193 238 161 43 chr13 15587029 15587520 -86285649 - MLT1H LTR MaLR 0 549 1 446 290 129 24 chr13 15589774 15590022 -86283147 - L1ME4a LINE L1 -297 5824 5551 397 219 39 28 chr13 15590613 15590791 -86282378 + (TA)n Simple_repeat Simple_repeat 1 180 0 217 143 44 11 chr13 15590885 15590976 -86282193 + (TA)n Simple_repeat Simple_repeat 1 94 0 207 132 75 0 chr13 15590993 15591046 -86282123 + (TA)n Simple_repeat Simple_repeat 1 57 0 720 170 89 0 chr13 15591052 15591164 -86282005 - FLAM_C SINE Alu -20 123 2 470 316 38 14 chr13 15592337 15592546 -86280623 - MIR SINE MIR -29 233 20 904 218 40 44 chr13 15592725 15592806 -86280363 - MIR SINE MIR -24 238 158 2106 191 8 11 chr13 15592806 15593172 -86279997 - MLT1A1 LTR MaLR 0 365 1 904 218 40 44 chr13 15593172 15593315 -86279854 - MIR SINE MIR -104 158 15 405 273 245 43 chr13 15593332 15593610 -86279559 - L2 LINE L2 -902 2412 2079 183 256 179 36 chr13 15593616 15593811 -86279358 + L2 LINE L2 2465 2687 -627 199 365 56 0 chr13 15594534 15594660 -86278509 + L2 LINE L2 2910 3042 -230 1004 232 76 108 chr13 15594743 15595310 -86277859 + MER34B LTR ERV1 1 542 0 296 347 0 0 chr13 15595379 15595451 -86277718 + L2 LINE L2 3201 3272 0 1721 175 0 14 chr13 15598148 15598440 -86274729 - AluJb SINE Alu -24 288 1 386 300 14 21 chr13 15598546 15598686 -86274483 + MER117 DNA MER1_type 1 139 -58 632 246 97 64 chr13 15599569 15599899 -86273270 - MLT1J LTR MaLR -8 503 163 458 305 37 21 chr13 15600237 15600427 -86272742 + LTR16C LTR ERVL 299 491 0 270 292 50 33 chr13 15600430 15600550 -86272619 - MLT1J LTR MaLR -354 157 36 1654 178 3 32 chr13 15601141 15601455 -86271714 + AluJo SINE Alu 5 309 -3 865 232 217 62 chr13 15602065 15602517 -86270652 - MLT1L LTR MaLR -5 610 89 398 293 115 0 chr13 15602536 15602693 -86270476 + MIR SINE MIR 88 262 0 423 259 127 71 chr13 15603215 15603412 -86269757 + MIR SINE MIR 47 254 -8 9293 233 63 24 chr13 15603495 15604541 -86268628 - L1ME1 LINE L1 -6 6658 5654 1455 201 27 7 chr13 15604541 15604835 -86268334 + AluJo SINE Alu 1 300 -12 9293 233 63 24 chr13 15604835 15605545 -86267624 - L1ME1 LINE L1 -1010 5654 4973 1899 159 21 0 chr13 15605545 15605835 -86267334 - AluJb SINE Alu -16 296 1 9293 233 63 24 chr13 15605835 15606526 -86266643 - L1ME1 LINE L1 -1691 4973 4310 1608 253 46 36 chr13 15606526 15607024 -86266145 + MLT1D LTR MaLR 1 503 -2 9293 233 63 24 chr13 15607024 15608293 -86264876 - L1ME1 LINE L1 -2354 4310 2769 7628 49 7 3 chr13 15608293 15609965 -86263204 - L1PA7 LINE L1 -2 6152 4477 188 133 0 0 chr13 15610466 15610496 -86262673 - MIR SINE MIR -109 153 124 215 304 0 0 chr13 15611633 15611679 -86261490 + L2 LINE L2 3161 3206 -66 411 199 62 85 chr13 15612075 15612251 -86260918 - MER53 DNA DNA 0 189 18 189 333 0 0 chr13 15612262 15612316 -86260853 + MIR SINE MIR 93 146 -62 294 231 15 15 chr13 15613015 15613080 -86260089 - L2 LINE L2 -2 3270 3206 4309 79 70 0 chr13 15613094 15613678 -86259491 - L1PB1 LINE L1 -5 6146 5522 353 77 0 0 chr13 15613926 15613978 -86259191 + FAM SINE Alu 122 173 -2 209 298 60 48 chr13 15614279 15614363 -86258806 + L2 LINE L2 3143 3227 -45 323 328 106 16 chr13 15614471 15614660 -86258509 + MIR SINE MIR 23 228 -34 378 337 66 28 chr13 15615964 15616145 -86257024 + L2 LINE L2 2932 3119 -153 2121 241 30 35 chr13 15616270 15616846 -86256323 - L1ME1 LINE L1 -5688 854 282 611 266 60 22 chr13 15616873 15617057 -86256112 + MLT1L LTR MaLR 43 233 -382 235 221 84 63 chr13 15617084 15617179 -86255990 - MER5A DNA MER1_type -86 103 7 2183 119 0 7 chr13 15617231 15617533 -86255636 + AluSg SINE Alu 1 300 -10 682 272 109 18 chr13 15617543 15617826 -86255343 + MLT1L LTR MaLR 295 603 -12 198 0 0 0 chr13 15617949 15617971 -86255198 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 1120 241 16 4 chr13 15618207 15618456 -86254713 - MER112 DNA MER1_type -1 259 8 278 294 102 99 chr13 15619293 15619636 -86253533 + L2 LINE L2 2913 3256 -16 4823 177 27 29 chr13 15619680 15620247 -86252922 + L1MB3 LINE L1 4838 5405 -778 2096 129 3 0 chr13 15620247 15620541 -86252628 + AluSq SINE Alu 1 295 -18 4823 177 27 29 chr13 15620541 15621321 -86251848 + L1MB3 LINE L1 5405 6183 0 1739 127 35 0 chr13 15622286 15622545 -86250624 + AluSg SINE Alu 36 303 -7 231 241 0 0 chr13 15622652 15622706 -86250463 - MER5B DNA MER1_type -124 54 1 1847 272 118 41 chr13 15622729 15624069 -86249100 - L2 LINE L2 -42 3271 1825 1688 116 8 0 chr13 15624120 15624362 -86248807 - L1MB2 LINE L1 -125 6046 5803 483 33 0 0 chr13 15627487 15627548 -86245621 + (CA)n Simple_repeat Simple_repeat 2 62 0 195 258 318 0 chr13 15627661 15627727 -86245442 - MER5A DNA MER1_type -94 95 9 428 301 30 12 chr13 15628383 15628549 -86244620 - MIR SINE MIR -24 238 70 349 317 20 0 chr13 15628816 15628917 -86244252 + L2 LINE L2 3208 3310 -3 271 258 11 34 chr13 15629419 15629508 -86243661 + MER5A DNA MER1_type 97 183 -6 505 254 14 28 chr13 15629949 15630091 -86243078 - L2 LINE L2 0 3272 3133 396 125 0 0 chr13 15630462 15630526 -86242643 + (GA)n Simple_repeat Simple_repeat 1 64 0 1227 158 171 40 chr13 15630527 15630849 -86242320 - MLT1B LTR MaLR 0 390 27 1350 77 0 22 chr13 15630942 15631123 -86242046 - L1PB1 LINE L1 -1 6150 5974 2355 76 0 7 chr13 15632453 15632757 -86240412 + AluSq SINE Alu 1 302 -11 25 0 0 0 chr13 15632917 15632942 -86240227 + AT_rich Low_complexity Low_complexity 1 25 0 2417 57 17 0 chr13 15633202 15633499 -86239670 - AluY SINE Alu -9 302 1 455 249 37 69 chr13 15633649 15633838 -86239331 + MER5A DNA MER1_type 7 189 0 259 257 162 13 chr13 15633962 15634111 -86239058 - MIR3 SINE MIR -2 206 36 202 359 29 35 chr13 15634606 15634776 -86238393 + L3b LINE CR1 1317 1485 -98 288 363 14 7 chr13 15634903 15635049 -86238120 - ERVL LTR ERVL -765 4999 4853 1739 216 95 31 chr13 15635485 15635906 -86237263 - LTR16A LTR ERVL -2 448 1 1182 308 70 29 chr13 15636528 15637188 -86235981 - ERVL LTR ERVL -867 4787 4102 647 193 20 7 chr13 15637194 15637344 -86235825 + Charlie1 DNA MER1_type 2610 2761 0 342 0 0 0 chr13 15637739 15637777 -86235392 + (TG)n Simple_repeat Simple_repeat 2 39 0 2151 122 0 10 chr13 15638249 15638552 -86234617 + AluSx SINE Alu 1 300 -12 1023 186 41 23 chr13 15640760 15640980 -86232189 - L1MC1 LINE L1 -13 6320 6097 1375 188 16 8 chr13 15640980 15641161 -86232008 - AluJo SINE Alu -3 309 124 8163 21 5 0 chr13 15641161 15642121 -86231048 + L1PA3 LINE L1 5191 6154 -1 1375 188 16 8 chr13 15642121 15642195 -86230974 - AluJo SINE Alu -188 124 52 2347 138 30 51 chr13 15642228 15642662 -86230507 - L1MC1 LINE L1 -227 6106 5682 3079 139 24 6 chr13 15642666 15643161 -86230008 - L1MB3 LINE L1 -1 6182 5679 545 192 8 0 chr13 15643162 15643282 -86229887 + CT-rich Low_complexity Low_complexity 3 123 0 380 148 15 25 chr13 15643297 15643374 -86229795 - L1P5 LINE L1 -478 5676 5605 * 5433 187 50 31 chr13 15643369 15644365 -86228804 - L1MB3 LINE L1 -649 5695 4657 2521 46 3 3 chr13 15644365 15644669 -86228500 - AluY SINE Alu -7 304 1 5433 187 50 31 chr13 15644669 15645446 -86227723 - L1MB3 LINE L1 -1687 4657 3896 805 99 0 0 chr13 15645493 15645594 -86227575 - AluS SINE Alu -211 102 2 1387 247 63 18 chr13 15645625 15646052 -86227117 + LTR51 LTR ERV1 228 842 -81 325 226 75 82 chr13 15646638 15646797 -86226372 + MIR SINE MIR 105 262 0 250 333 11 11 chr13 15646864 15646954 -86226215 + MIR SINE MIR 20 109 -153 508 224 64 26 chr13 15646966 15647122 -86226047 - MER5A DNA MER1_type -21 168 7 218 169 231 0 chr13 15648522 15648587 -86224582 - L2 LINE L2 0 3272 3193 1615 115 77 4 chr13 15648720 15648955 -86224214 - L1PB3 LINE L1 0 6154 5903 193 133 0 0 chr13 15649013 15649043 -86224126 + MIR SINE MIR 158 187 -75 207 209 0 23 chr13 15649310 15649353 -86223816 + CT-rich Low_complexity Low_complexity 4 45 0 1421 134 17 26 chr13 15650345 15650443 -86222726 - MER30 DNA MER1_type 0 230 133 2392 106 0 0 chr13 15650443 15650746 -86222423 - AluSx SINE Alu -9 303 1 1421 134 17 26 chr13 15650746 15650879 -86222290 - MER30 DNA MER1_type -97 133 1 186 43 0 0 chr13 15650960 15650983 -86222186 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1901 94 4 0 chr13 15651293 15651538 -86221631 - AluSx SINE Alu -6 306 61 3908 148 6 16 chr13 15652558 15653202 -86219967 - L1MB3 LINE L1 0 6183 5546 2266 113 3 3 chr13 15653213 15653522 -86219647 - AluSx SINE Alu -3 309 1 1061 250 24 15 chr13 15654904 15655206 -86217963 + MLT2D LTR ERVL 66 366 -48 725 139 20 0 chr13 15655215 15655472 -86217697 + (TG)n Simple_repeat Simple_repeat 1 262 0 923 76 41 0 chr13 15655490 15655662 -86217507 + (TG)n Simple_repeat Simple_repeat 2 180 0 303 130 0 0 chr13 15655682 15655728 -86217441 + MLT2D LTR ERVL 473 518 -2 884 289 141 22 chr13 15655883 15656344 -86216825 - LTR33 LTR ERVL -4 517 2 681 155 84 39 chr13 15656936 15657091 -86216078 + MER96 DNA MER1_type? 14 175 0 318 26 0 0 chr13 15658530 15658569 -86214600 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr13 15658618 15658646 -86214523 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr13 15658765 15658818 -86214351 + AT_rich Low_complexity Low_complexity 1 53 0 198 291 25 25 chr13 15659619 15659698 -86213471 - MIR SINE MIR 0 262 184 2439 60 7 0 chr13 15659782 15660080 -86213089 + AluY SINE Alu 1 300 -11 537 271 91 50 chr13 15660133 15660489 -86212680 + L1ME3A LINE L1 5208 5579 -583 325 367 59 23 chr13 15660514 15660819 -86212350 + L1ME3A LINE L1 5625 5940 -230 304 160 0 0 chr13 15661493 15661543 -86211626 - L2 LINE L2 -2 3311 3262 909 337 104 15 chr13 15661543 15661925 -86211244 + L2 LINE L2 2202 2549 -765 1912 134 26 35 chr13 15661925 15662238 -86210931 - AluSx SINE Alu -2 310 1 909 337 104 15 chr13 15662238 15662568 -86210601 + L2 LINE L2 2549 2977 -337 422 276 78 0 chr13 15662611 15662727 -86210442 - L2 LINE L2 0 3313 3189 486 263 26 53 chr13 15662891 15663043 -86210126 + L2 LINE L2 3124 3271 -1 274 270 118 33 chr13 15663185 15663337 -86209832 - L2 LINE L2 -1605 1709 1545 762 216 34 6 chr13 15663417 15663593 -86209576 + MER33 DNA MER1_type 6 186 -138 3709 140 42 32 chr13 15663622 15664244 -86208925 + MER82 DNA MER2_type 25 652 -1 545 190 28 21 chr13 15664244 15664372 -86208797 + MER33 DNA MER1_type 192 320 -4 22 0 0 0 chr13 15666359 15666381 -86206788 + AT_rich Low_complexity Low_complexity 1 22 0 281 211 119 0 chr13 15667137 15667246 -86205923 - L1ME4a LINE L1 0 6121 6000 21 0 0 0 chr13 15667974 15667995 -86205174 + AT_rich Low_complexity Low_complexity 1 21 0 209 302 0 16 chr13 15668074 15668137 -86205032 - MIR3 SINE MIR -8 200 139 2395 180 40 4 chr13 15668455 15668905 -86204264 - MLT1C LTR MaLR 0 467 2 445 198 155 9 chr13 15668968 15669084 -86204085 - MIR SINE MIR -88 174 42 1129 255 81 15 chr13 15669121 15669718 -86203451 - L2 LINE L2 -18 3295 2328 282 242 0 16 chr13 15669926 15669988 -86203181 + L2 LINE L2 3210 3270 -2 1026 190 0 0 chr13 15670061 15670235 -86202934 + AluJo SINE Alu 122 295 -17 291 204 0 0 chr13 15670240 15670289 -86202880 + AluSc SINE Alu 125 173 -126 343 197 0 0 chr13 15671393 15671459 -86201710 - Alu SINE Alu 0 302 237 189 0 0 0 chr13 15671500 15671521 -86201648 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1657 167 0 57 chr13 15671524 15671823 -86201346 - AluJo SINE Alu -30 282 1 22 0 0 0 chr13 15672333 15672355 -86200814 + AT_rich Low_complexity Low_complexity 1 22 0 1230 217 20 23 chr13 15672674 15672796 -86200373 - L1MA4 LINE L1 -5 6295 6174 1062 62 12 12 chr13 15672796 15672957 -86200212 + (TTTC)n Simple_repeat Simple_repeat 3 163 0 1677 140 62 11 chr13 15672957 15673224 -86199945 - AluSq SINE Alu -32 281 1 1230 217 20 23 chr13 15673224 15673404 -86199765 - L1MA4 LINE L1 -124 6176 5998 3468 288 176 24 chr13 15673671 15673822 -86199347 - L2 LINE L2 -2 3311 3184 4727 167 57 16 chr13 15673822 15674653 -86198516 - MER6 DNA MER2_type 0 865 1 3468 288 176 24 chr13 15674653 15675653 -86197516 - L2 LINE L2 -129 3184 2338 2636 156 30 26 chr13 15675653 15676083 -86197086 + Tigger2a DNA MER2_type 3 434 0 3468 288 176 24 chr13 15676083 15677417 -86195752 - L2 LINE L2 -975 2338 451 2119 142 0 0 chr13 15677427 15677729 -86195440 - AluSx SINE Alu -10 302 1 309 320 131 8 chr13 15678151 15678410 -86194759 - L2 LINE L2 -645 2669 2379 119 37 0 0 chr13 15678428 15678589 -86194580 + AT_rich Low_complexity Low_complexity 1 161 0 315 276 121 75 chr13 15678764 15678985 -86194184 - L1ME4a LINE L1 -233 5888 5646 951 196 28 0 chr13 15678985 15679164 -86194005 - L1MD1 LINE L1 0 6242 6059 315 276 121 75 chr13 15679164 15679264 -86193905 - L1ME4a LINE L1 -475 5646 5552 239 304 80 64 chr13 15679406 15679656 -86193513 + MLT1J1 LTR MaLR 58 311 -135 785 121 49 197 chr13 15679773 15680037 -86193132 + MLT1A1 LTR MaLR 1 225 -149 579 230 59 0 chr13 15680189 15680341 -86192828 + L2 LINE L2 2448 2608 -706 630 80 0 0 chr13 15680385 15680460 -86192709 + AluY SINE Alu 218 292 -19 1286 249 47 64 chr13 15680502 15680934 -86192235 + L2 LINE L2 2853 3278 -35 1908 209 96 24 chr13 15680934 15681402 -86191767 - MLT1D LTR MaLR -3 502 1 1286 249 47 64 chr13 15681402 15681438 -86191731 + L2 LINE L2 3278 3313 0 599 307 115 16 chr13 15682120 15682364 -86190805 + L3 LINE CR1 1301 1568 -9 285 306 41 27 chr13 15682410 15682557 -86190612 - LTR67 LTR ERVL 0 557 409 525 334 77 13 chr13 15683092 15683658 -86189511 - L1MD1 LINE L1 -755 5391 5176 227 155 14 113 chr13 15685464 15685535 -86187634 - HAL1 LINE L1 -121 2386 2323 455 216 97 15 chr13 15685570 15685704 -86187465 - HAL1 LINE L1 -314 2193 2049 1805 187 62 40 chr13 15685732 15685779 -86187390 - L1MCb LINE L1 -5015 1030 985 285 29 0 0 chr13 15685779 15685813 -86187356 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1805 187 62 40 chr13 15685813 15686187 -86186982 - L1MCb LINE L1 -5060 985 600 460 198 72 27 chr13 15688524 15688635 -86184534 - MER117 DNA MER1_type -3 194 79 927 311 83 11 chr13 15688697 15689141 -86184028 - L2 LINE L2 0 3313 2838 5241 141 21 27 chr13 15689147 15689582 -86183587 + L1MA8 LINE L1 5168 5604 -708 1933 164 0 16 chr13 15689582 15689894 -86183275 + AluJo SINE Alu 1 307 -5 5241 141 21 27 chr13 15689894 15690461 -86182708 + L1MA8 LINE L1 5604 6142 -170 2303 109 3 3 chr13 15690461 15690773 -86182396 - AluSx SINE Alu 0 312 1 5241 141 21 27 chr13 15690773 15690919 -86182250 + L1MA8 LINE L1 6142 6287 -25 180 0 0 0 chr13 15690920 15690940 -86182229 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 204 281 172 0 chr13 15691005 15691069 -86182100 - L2 LINE L2 0 3313 3239 2136 110 3 0 chr13 15691897 15692179 -86180990 + AluSx SINE Alu 1 283 -29 266 210 81 0 chr13 15693159 15693221 -86179948 - MIR SINE MIR -115 147 81 206 106 43 21 chr13 15694306 15694353 -86178816 + (CGGG)n Simple_repeat Simple_repeat 2 49 0 358 319 129 74 chr13 15694373 15695131 -86178038 + L1M2 LINE L1 471 1270 -5579 225 0 0 0 chr13 15697668 15697693 -86175476 + (TG)n Simple_repeat Simple_repeat 1 25 0 362 119 48 0 chr13 15697693 15697777 -86175392 + GA-rich Low_complexity Low_complexity 2 89 0 1216 282 175 10 chr13 15698185 15698798 -86174371 + L2 LINE L2 1954 2667 -647 2227 99 0 7 chr13 15699570 15699862 -86173307 + AluSq SINE Alu 1 290 -23 211 267 13 67 chr13 15700573 15700648 -86172521 + L2 LINE L2 2957 3027 -245 196 368 35 11 chr13 15700686 15700773 -86172396 + L2 LINE L2 3149 3237 -35 301 265 147 1 chr13 15700985 15701111 -86172058 - MLT1J2 LTR MaLR -223 227 99 337 330 168 21 chr13 15701834 15702119 -86171050 - L3 LINE CR1 -11 1566 1240 187 152 0 0 chr13 15702221 15702254 -86170915 - MIR SINE MIR -10 252 220 905 202 43 58 chr13 15703228 15703436 -86169733 - MER58A DNA MER1_type 0 224 20 709 242 144 28 chr13 15703599 15703884 -86169285 - L3 LINE CR1 -464 1113 796 266 250 37 56 chr13 15704220 15704328 -86168841 + MLT1H LTR MaLR 440 545 -4 303 222 56 0 chr13 15704335 15704407 -86168762 + HAL1 LINE L1 1268 1343 -1164 512 244 9 0 chr13 15704433 15704548 -86168621 - HERV16 LTR ERVL -3169 1827 1712 1465 320 53 18 chr13 15704571 15705234 -86167935 - HERV16 LTR ERVL -3539 1457 772 251 241 69 0 chr13 15705294 15705352 -86167817 - HERV16 LTR ERVL -4320 676 615 303 323 55 18 chr13 15705617 15705781 -86167388 - HERV16 LTR ERVL -4766 230 61 1844 247 33 20 chr13 15705801 15706259 -86166910 - LTR16B LTR ERVL 0 464 1 1278 259 154 22 chr13 15706259 15706843 -86166326 + HAL1 LINE L1 1531 2191 -316 429 213 213 62 chr13 15706845 15707070 -86166099 + HAL1 LINE L1 2235 2493 -14 22 88 0 0 chr13 15707071 15707128 -86166041 + AT_rich Low_complexity Low_complexity 1 57 0 194 348 37 31 chr13 15707179 15707340 -86165829 - L3 LINE CR1 -861 716 555 1489 199 65 70 chr13 15707552 15707597 -86165572 - MSTD LTR MaLR 0 396 352 2397 63 0 0 chr13 15707597 15707907 -86165262 - AluY SINE Alu 0 310 1 1489 199 65 70 chr13 15707907 15708258 -86164911 - MSTD LTR MaLR -44 352 1 842 306 15 6 chr13 15708767 15709103 -86164066 + HAL1 LINE L1 1032 1370 -1137 779 269 200 37 chr13 15709106 15709841 -86163328 + HAL1 LINE L1 1642 2496 -11 268 294 94 0 chr13 15709930 15710015 -86163154 - MIR SINE MIR -86 122 30 603 264 194 65 chr13 15710226 15710753 -86162416 - MLT1G1 LTR MaLR 0 595 1 279 341 83 30 chr13 15710781 15710913 -86162256 + L2 LINE L2 2953 3091 -181 230 288 121 79 chr13 15711423 15711638 -86161531 + L2 LINE L2 2837 3060 -253 250 262 12 36 chr13 15712295 15712379 -86160790 + LTR37B LTR ERV1 117 198 -270 * 297 259 12 12 chr13 15712368 15712453 -86160716 + LTR37A LTR ERV1 111 195 -231 797 203 32 60 chr13 15712528 15712779 -86160390 + L2 LINE L2 3065 3308 -5 495 227 53 0 chr13 15712858 15712990 -86160179 + MER112 DNA MER1_type 77 215 -45 489 125 50 0 chr13 15714307 15714427 -86158742 + (CA)n Simple_repeat Simple_repeat 2 127 0 245 157 0 59 chr13 15714532 15714583 -86158586 - MLT1K LTR MaLR -317 271 224 318 192 41 0 chr13 15714752 15714825 -86158344 + L1MB2 LINE L1 6096 6171 0 282 282 64 0 chr13 15715169 15715247 -86157922 + L2 LINE L2 3229 3311 -2 645 222 100 123 chr13 15715461 15715812 -86157357 + MLT1H LTR MaLR 1 343 -206 408 263 62 96 chr13 15716890 15717309 -86155860 - L1ME4a LINE L1 -4 6117 5713 193 196 0 22 chr13 15717309 15717355 -86155814 + L2 LINE L2 3269 3313 0 765 257 82 31 chr13 15718836 15719093 -86154076 + L2 LINE L2 2451 2720 -594 327 209 132 54 chr13 15719096 15719225 -86153944 + L1ME2 LINE L1 5886 6024 -140 538 156 19 14 chr13 15719228 15719330 -86153839 - L1ME LINE L1 -357 5805 5705 648 49 0 24 chr13 15719330 15719412 -86153757 + MADE1 DNA Mariner 1 80 0 538 156 19 14 chr13 15719412 15719432 -86153737 - L1ME LINE L1 -457 5705 5687 815 165 129 31 chr13 15719486 15719680 -86153489 - MIR SINE MIR -42 220 8 234 180 369 9 chr13 15719899 15720010 -86153159 + L2 LINE L2 3159 3309 -4 21 0 0 0 chr13 15720031 15720052 -86153117 + AT_rich Low_complexity Low_complexity 1 21 0 3010 206 36 81 chr13 15720221 15720657 -86152512 - L1ME2 LINE L1 -36 6197 5743 2118 101 0 10 chr13 15720657 15720954 -86152215 - AluSq SINE Alu -19 294 1 3010 206 36 81 chr13 15720954 15721201 -86151968 - L1ME2 LINE L1 -490 5743 5565 2004 144 14 0 chr13 15721201 15721492 -86151677 - AluSx SINE Alu -17 295 1 3010 206 36 81 chr13 15721492 15721741 -86151428 - L1ME2 LINE L1 -668 5565 5306 358 228 89 0 chr13 15721747 15721848 -86151321 + L1M4 LINE L1 5120 5229 -917 2425 231 78 5 chr13 15721869 15722612 -86150557 - L1ME2 LINE L1 -1033 5182 4386 1107 141 0 50 chr13 15722614 15722813 -86150356 - AluJo SINE Alu 0 312 124 751 173 72 43 chr13 15722813 15722927 -86150242 - L1ME2 LINE L1 -1838 4377 4253 183 42 0 0 chr13 15722927 15722951 -86150218 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 751 173 72 43 chr13 15722951 15723044 -86150125 - L1ME2 LINE L1 -1962 4253 4164 6158 231 27 28 chr13 15723046 15723452 -86149717 - L1M4 LINE L1 -1717 4429 4024 2208 68 14 0 chr13 15723452 15723754 -86149415 - AluSp SINE Alu 0 306 1 6158 231 27 28 chr13 15723754 15725191 -86147978 - L1M4 LINE L1 -2122 4024 2588 674 257 78 47 chr13 15725172 15725329 -86147840 - L1ME2 LINE L1 -3930 2466 2315 * 2093 84 84 0 chr13 15725329 15725603 -86147566 - AluSg SINE Alu -13 297 1 674 257 78 47 chr13 15725603 15725869 -86147300 - L1ME2 LINE L1 -4081 2315 2030 601 304 94 38 chr13 15725885 15726744 -86146425 - L1ME2 LINE L1 -5152 1053 173 277 202 119 36 chr13 15727488 15727572 -86145597 - L2 LINE L2 -213 3059 2969 240 261 0 0 chr13 15728103 15728168 -86145001 - L1ME LINE L1 -367 5754 5690 230 281 45 11 chr13 15728810 15728899 -86144270 - MIR SINE MIR -57 205 114 341 258 22 0 chr13 15729078 15729167 -86144002 - MIR SINE MIR -12 250 160 1682 157 40 30 chr13 15729226 15729526 -86143643 + AluJo SINE Alu 1 303 -9 1517 178 6 38 chr13 15729922 15730242 -86142927 - AluJo SINE Alu -2 310 1 2297 52 0 35 chr13 15734500 15734790 -86138379 + AluY SINE Alu 13 292 -19 2483 72 7 0 chr13 15736299 15736606 -86136563 - AluY SINE Alu -2 309 1 2305 117 0 0 chr13 15737428 15737737 -86135432 - AluSg SINE Alu -1 309 1 1635 163 67 11 chr13 15737928 15738211 -86134958 - AluJb SINE Alu -13 299 1 1767 171 7 10 chr13 15740064 15740357 -86132812 + AluJb SINE Alu 2 293 -19 2303 125 0 0 chr13 15740357 15740662 -86132507 + AluSx SINE Alu 1 305 -7 2054 141 42 12 chr13 15740719 15741272 -86131897 - LTR31 LTR ERV1 -9 610 1 2265 90 0 23 chr13 15741458 15741759 -86131410 + AluSc SINE Alu 1 294 -15 630 160 16 0 chr13 15743657 15743782 -86129387 - L1ME4a LINE L1 -3 6118 5992 398 245 133 0 chr13 15743803 15743954 -86129215 - L1ME4a LINE L1 -204 5917 5747 1800 141 7 4 chr13 15744918 15745187 -86127982 + AluJo SINE Alu 13 282 -30 931 160 50 0 chr13 15745249 15745449 -86127720 - Charlie5 DNA MER1_type 0 2623 2414 230 350 60 10 chr13 15745600 15745700 -86127469 + L2 LINE L2 3168 3272 0 333 0 0 0 chr13 15746376 15746413 -86126756 + (T)n Simple_repeat Simple_repeat 1 37 0 231 206 88 29 chr13 15746505 15746573 -86126596 + MIR SINE MIR 73 144 -118 334 295 0 32 chr13 15748595 15748690 -86124479 + MIR SINE MIR 60 151 -57 445 220 262 0 chr13 15748699 15748840 -86124329 + MER5B DNA MER1_type 1 178 0 453 233 164 25 chr13 15748847 15749006 -86124163 - MER5A DNA MER1_type 0 189 9 1889 112 26 0 chr13 15749262 15749531 -86123638 - L1PA11 LINE L1 -7 6167 5892 27 29 0 0 chr13 15749892 15749926 -86123243 + AT_rich Low_complexity Low_complexity 1 34 0 278 223 284 20 chr13 15751254 15751402 -86121767 + L2 LINE L2 3127 3313 0 511 174 143 0 chr13 15752205 15752303 -86120866 - MER5B DNA MER1_type 0 178 67 763 204 49 35 chr13 15752344 15752570 -86120599 + LTR33A LTR ERVL 274 502 -21 468 0 0 0 chr13 15753384 15753436 -86119733 + (CA)n Simple_repeat Simple_repeat 2 53 0 311 287 47 67 chr13 15753694 15753756 -86119413 - MIR SINE MIR -102 160 98 1218 152 221 70 chr13 15753756 15754072 -86119097 - MLT1A1 LTR MaLR 0 365 2 311 287 47 67 chr13 15754072 15754159 -86119010 - MIR SINE MIR -164 98 14 877 216 161 63 chr13 15754552 15754899 -86118270 + MER45R DNA AcHobo 1 381 -1200 245 152 0 0 chr13 15754915 15754961 -86118208 + MER45R DNA AcHobo 890 935 -646 1964 154 3 0 chr13 15754970 15755263 -86117906 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr13 15755268 15755288 -86117881 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2782 153 40 80 chr13 15755307 15755861 -86117308 + MER45R DNA AcHobo 930 1454 -127 2319 113 0 0 chr13 15755861 15756163 -86117006 - AluSx SINE Alu -10 302 1 2782 153 40 80 chr13 15756163 15756287 -86116882 + MER45R DNA AcHobo 1454 1581 0 1293 214 4 0 chr13 15756796 15757030 -86116139 - Charlie1a DNA MER1_type -1218 237 3 2218 109 0 19 chr13 15757307 15757620 -86115549 + AluSc SINE Alu 1 307 -2 425 319 57 69 chr13 15757695 15758084 -86115085 + HAL1 LINE L1 1218 1601 -906 1049 126 222 104 chr13 15758390 15758660 -86114509 - AluJo SINE Alu 0 302 1 238 226 0 48 chr13 15759023 15759107 -86114062 + A-rich Low_complexity Low_complexity 4 83 0 748 186 7 0 chr13 15759121 15759261 -86113908 + L1MC3 LINE L1 7451 7591 -194 204 97 0 0 chr13 15759529 15759560 -86113609 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 387 301 65 115 chr13 15759562 15759901 -86113268 - L2 LINE L2 -12 3260 2939 607 295 85 66 chr13 15760123 15760733 -86112436 + L1MD1 LINE L1 3356 3953 -2193 1836 135 62 0 chr13 15760733 15761022 -86112147 + AluSx SINE Alu 1 307 -5 607 295 85 66 chr13 15761022 15761190 -86111979 + L1MD1 LINE L1 3953 4116 -2030 743 178 0 31 chr13 15761190 15761319 -86111850 + FLAM_A SINE Alu 1 125 -8 607 295 85 66 chr13 15761319 15761459 -86111710 + L1MD1 LINE L1 4116 4292 -1854 225 154 0 0 chr13 15762134 15762173 -86110996 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 375 284 111 65 chr13 15762384 15762934 -86110235 + L1MD1 LINE L1 5330 5829 -413 189 121 0 0 chr13 15762977 15763010 -86110159 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 250 240 0 0 chr13 15763071 15763121 -86110048 + GA-rich Low_complexity Low_complexity 1 50 0 452 169 17 17 chr13 15763145 15763263 -86109906 + GA-rich Low_complexity Low_complexity 3 120 0 2107 229 44 50 chr13 15765858 15766475 -86106694 + MER97a DNA MER1_type? 4 616 -278 1206 186 5 0 chr13 15766481 15766701 -86106468 + L1M4 LINE L1 5438 5658 -526 739 203 32 0 chr13 15766702 15766860 -86106309 - MLT1F1 LTR MaLR -403 164 2 21 0 0 0 chr13 15767051 15767072 -86106097 + AT_rich Low_complexity Low_complexity 1 21 0 254 270 140 10 chr13 15767894 15767994 -86105175 + MIR SINE MIR 39 151 -111 227 231 0 0 chr13 15768039 15768091 -86105078 + L1MC4 LINE L1 6652 6703 -1339 2144 94 75 70 chr13 15768120 15768492 -86104677 - THE1C LTR MaLR -1 374 1 611 278 81 63 chr13 15771823 15772107 -86101062 + L2 LINE L2 3024 3312 -1 2237 161 75 50 chr13 15772197 15772613 -86100556 - MSTB LTR MaLR 0 426 1 2693 97 17 36 chr13 15772757 15772807 -86100362 - L1MA4 LINE L1 -4 6296 6247 216 0 0 0 chr13 15772807 15772831 -86100338 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2289 88 0 0 chr13 15772831 15773114 -86100055 - AluSx SINE Alu -29 283 1 2693 97 17 36 chr13 15773114 15773475 -86099694 - L1MA4 LINE L1 -51 6249 5892 2640 133 31 0 chr13 15773475 15773897 -86099272 + L1MA4 LINE L1 5409 5843 -457 1867 199 126 36 chr13 15774228 15774575 -86098594 - MLT2B1 LTR ERVL 0 520 117 17372 131 32 12 chr13 15774575 15777240 -86095929 - Tigger2 DNA MER2_type 0 2718 2 1867 199 126 36 chr13 15777240 15777369 -86095800 - MLT2B1 LTR ERVL -403 117 1 180 302 43 52 chr13 15777369 15777485 -86095684 + L2 LINE L2 2276 2390 -924 293 343 120 50 chr13 15777496 15777796 -86095373 + L2 LINE L2 2369 2689 -625 2009 221 22 14 chr13 15778736 15779180 -86093989 - MER82 DNA MER2_type -7 646 199 1162 190 10 0 chr13 15779469 15779669 -86093500 - MER82 DNA MER2_type -451 202 1 512 92 51 51 chr13 15780264 15780362 -86092807 - L1MA5A LINE L1 -3 6294 6197 27 0 0 0 chr13 15781132 15781159 -86092010 + AT_rich Low_complexity Low_complexity 1 27 0 362 236 194 0 chr13 15781505 15781649 -86091520 + MER5A DNA MER1_type 8 179 -10 209 238 16 16 chr13 15783185 15783248 -86089921 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 21 82 0 0 chr13 15783316 15783365 -86089804 + AT_rich Low_complexity Low_complexity 1 49 0 1904 147 0 3 chr13 15784117 15784409 -86088760 + AluJb SINE Alu 1 291 -21 216 147 0 0 chr13 15784429 15784463 -86088706 - L2 LINE L2 -19 3253 3220 756 304 91 6 chr13 15785483 15785835 -86087334 + L3 LINE CR1 1190 1571 -6 277 331 171 7 chr13 15786352 15786621 -86086548 + L2 LINE L2 2967 3279 -34 636 246 104 5 chr13 15788273 15788493 -86084676 - MIR SINE MIR 0 262 21 507 133 61 8 chr13 15790398 15790635 -86082534 + (TCTA)n Simple_repeat Simple_repeat 1 249 0 237 323 42 0 chr13 15791051 15791147 -86082022 - MIR SINE MIR -142 120 21 276 196 54 115 chr13 15792051 15792199 -86080970 + Charlie7 DNA MER1_type 2427 2565 -47 742 267 63 55 chr13 15793466 15793863 -86079306 + MLT1L LTR MaLR 1 400 -215 225 196 107 0 chr13 15793907 15793963 -86079206 + MLT1L LTR MaLR 507 568 -47 241 340 59 55 chr13 15794242 15794498 -86078671 + L2 LINE L2 3004 3260 -12 2230 104 0 7 chr13 15795094 15795391 -86077778 - AluSx SINE Alu -17 295 1 296 267 0 22 chr13 15796401 15796491 -86076678 + MIR SINE MIR 125 212 -50 391 288 17 8 chr13 15796537 15796655 -86076514 - L2 LINE L2 0 3313 3195 522 236 20 92 chr13 15798659 15798757 -86074412 + MLT1L LTR MaLR 420 499 -116 1694 121 121 11 chr13 15798757 15799022 -86074147 - AluSg SINE Alu -16 294 1 522 236 20 92 chr13 15799022 15799118 -86074051 + MLT1L LTR MaLR 499 600 -15 2216 123 0 3 chr13 15799266 15799567 -86073602 + AluSx SINE Alu 1 300 -12 2066 129 0 44 chr13 15799652 15799833 -86073336 - AluSx SINE Alu -8 304 141 2267 118 0 0 chr13 15799833 15800129 -86073040 - AluSq SINE Alu -17 296 1 2066 129 0 44 chr13 15800129 15800265 -86072904 - AluSx SINE Alu -171 141 1 576 205 103 7 chr13 15800385 15800535 -86072634 + MER45A DNA AcHobo 13 178 0 2587 77 0 3 chr13 15800756 15801069 -86072100 + AluSx SINE Alu 1 312 0 213 65 0 0 chr13 15805855 15805886 -86067283 + (TG)n Simple_repeat Simple_repeat 1 31 0 408 172 16 8 chr13 15805886 15806008 -86067161 + GA-rich Low_complexity Low_complexity 2 124 0 433 208 12 0 chr13 15806054 15806227 -86066942 + GA-rich Low_complexity Low_complexity 1 175 0 204 318 0 0 chr13 15806804 15806867 -86066302 + L2 LINE L2 3209 3271 -1 441 175 0 0 chr13 15809514 15809594 -86063575 + AluJ/FRAM SINE Alu 219 298 -14 213 383 47 7 chr13 15809742 15809891 -86063278 + MIR SINE MIR 47 201 -61 1970 133 43 54 chr13 15810207 15810575 -86062594 + THE1B LTR MaLR 1 364 0 793 182 0 0 chr13 15810575 15810707 -86062462 + FLAM_A SINE Alu 11 142 0 600 290 29 29 chr13 15811566 15811811 -86061358 + MER112 DNA MER1_type 8 252 -8 308 310 125 47 chr13 15811968 15812177 -86060992 + L3 LINE CR1 280 520 -1057 1499 112 51 0 chr13 15812177 15812392 -86060777 + MER30 DNA MER1_type 5 230 0 308 310 125 47 chr13 15812392 15812479 -86060690 + L3 LINE CR1 520 599 -978 744 333 80 27 chr13 15812741 15813191 -86059978 + L3 LINE CR1 759 1232 -345 367 219 123 0 chr13 15813191 15813305 -86059864 + MER5C DNA MER1_type 1 128 -196 2093 133 7 0 chr13 15813833 15814127 -86059042 + AluSx SINE Alu 1 296 -16 2385 187 64 27 chr13 15814341 15814929 -86058240 + LTR27 LTR ERV1 3 680 -141 580 192 79 11 chr13 15815070 15815247 -86057922 + MER5C DNA MER1_type 132 320 -4 314 135 0 19 chr13 15815366 15815418 -86057751 - MER58A DNA MER1_type -11 96 46 375 300 74 58 chr13 15815457 15815767 -86057402 + L3 LINE CR1 1261 1575 -2 306 279 135 0 chr13 15817255 15817359 -86055810 + MIR SINE MIR 32 149 -113 2311 95 16 0 chr13 15818747 15819051 -86054118 - AluSx SINE Alu -3 309 1 326 348 118 9 chr13 15819209 15819430 -86053739 + MIR SINE MIR 4 248 -14 189 326 45 30 chr13 15819467 15819599 -86053570 - L2 LINE L2 -350 2963 2830 1280 164 9 35 chr13 15820025 15820256 -86052913 - AluJo SINE Alu -17 295 71 1308 208 58 61 chr13 15820829 15821190 -86051979 + MLT1A2 LTR MaLR 1 360 -14 255 143 0 0 chr13 15821263 15821298 -86051871 - Alu SINE Alu -267 35 1 892 204 78 13 chr13 15821303 15821533 -86051636 - L1ME3 LINE L1 -189 5973 5729 2277 98 3 7 chr13 15821535 15821842 -86051327 - AluSc SINE Alu -3 306 1 203 379 116 12 chr13 15822198 15822449 -86050720 + L2 LINE L2 2368 2644 -670 3035 201 106 61 chr13 15823091 15823892 -86049277 + L1ME1 LINE L1 5213 6220 -114 1842 146 0 33 chr13 15823892 15824032 -86049137 + AluJb SINE Alu 1 144 -168 2283 106 3 0 chr13 15824032 15824324 -86048845 + AluSx SINE Alu 1 293 -19 1842 146 0 33 chr13 15824324 15824485 -86048684 + AluJb SINE Alu 144 292 -20 3035 201 106 61 chr13 15824485 15824605 -86048564 + L1ME1 LINE L1 6220 6333 -1 4431 225 35 27 chr13 15824617 15825661 -86047508 + L1MC1 LINE L1 2 1054 -5488 213 65 0 0 chr13 15825661 15825692 -86047477 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5962 195 26 11 chr13 15825695 15827383 -86045786 + L1MC1 LINE L1 5119 6831 0 196 361 56 28 chr13 15828368 15828476 -86044693 - MIR3 SINE MIR -40 168 58 355 274 66 0 chr13 15828892 15828998 -86044171 - L2 LINE L2 -27 3245 3133 2280 186 29 10 chr13 15829186 15829601 -86043568 - MSTB LTR MaLR -1 425 3 2701 169 53 25 chr13 15830342 15830873 -86042296 + LTR35 LTR ERV1 73 618 0 340 287 37 19 chr13 15833298 15833406 -86039763 + MIR SINE MIR 151 260 -2 31 44 0 0 chr13 15833629 15833674 -86039495 + AT_rich Low_complexity Low_complexity 1 45 0 490 298 42 64 chr13 15834100 15834412 -86038757 + MER41E LTR ERV1 148 452 -60 465 206 36 198 chr13 15834555 15834803 -86038366 + MIR SINE MIR 45 252 -10 28 71 0 0 chr13 15835017 15835073 -86038096 + AT_rich Low_complexity Low_complexity 1 56 0 1980 153 0 7 chr13 15835375 15835683 -86037486 + AluSx SINE Alu 1 306 -6 246 105 0 0 chr13 15836173 15836211 -86036958 + (GA)n Simple_repeat Simple_repeat 2 39 0 3597 235 65 10 chr13 15837596 15839300 -86033869 + L1ME1 LINE L1 4235 6051 -115 1930 174 0 0 chr13 15839300 15839604 -86033565 - AluJo SINE Alu -8 304 1 3597 235 65 10 chr13 15839604 15839707 -86033462 + L1ME1 LINE L1 6051 6147 -19 2581 106 6 11 chr13 15839708 15840065 -86033104 - THE1A LTR MaLR 0 355 1 1176 70 6 0 chr13 15840065 15840222 -86032947 - THE1A-int LTR MaLR 0 1580 1423 * 4983 96 38 11 chr13 15840216 15840923 -86032246 - THE1A-int LTR MaLR -853 727 2 2684 93 8 8 chr13 15840924 15841279 -86031890 - THE1A LTR MaLR 0 355 1 2153 129 0 10 chr13 15841294 15841596 -86031573 + AluSx SINE Alu 1 299 -13 640 98 67 0 chr13 15841596 15841760 -86031409 + (TA)n Simple_repeat Simple_repeat 2 176 0 29 28 0 0 chr13 15841803 15841839 -86031330 + AT_rich Low_complexity Low_complexity 1 36 0 280 344 10 10 chr13 15842413 15842509 -86030660 + MIR SINE MIR 19 114 -94 200 200 18 0 chr13 15843042 15843097 -86030072 + CT-rich Low_complexity Low_complexity 2 57 0 315 357 16 8 chr13 15843125 15843251 -86029918 + L2 LINE L2 3185 3311 -2 2184 116 10 7 chr13 15844704 15845014 -86028155 + AluSx SINE Alu 1 311 -1 2969 92 2 12 chr13 15847898 15848302 -86024867 + L1MA1 LINE L1 5903 6302 0 21 36 0 0 chr13 15852248 15852276 -86020893 + AT_rich Low_complexity Low_complexity 1 28 0 738 275 67 37 chr13 15852331 15852693 -86020476 + MLT1I LTR MaLR 52 395 -14 1460 21 3 17 chr13 15855695 15856044 -86017125 + (GGAA)n Simple_repeat Simple_repeat 1 344 0 658 262 24 12 chr13 15857250 15857418 -86015751 + MIR SINE MIR 49 218 -44 201 325 106 63 chr13 15857559 15857796 -86015373 - L2 LINE L2 0 3272 3026 285 75 0 0 chr13 15859246 15859286 -86013883 + (CA)n Simple_repeat Simple_repeat 1 40 0 374 236 68 96 chr13 15860021 15860241 -86012928 + MER112 DNA MER1_type 5 218 -42 226 268 48 100 chr13 15860336 15860479 -86012690 + L2 LINE L2 2451 2579 -735 1712 94 31 5 chr13 15860479 15860703 -86012466 + MER30 DNA MER1_type 1 230 0 226 268 48 100 chr13 15860703 15860790 -86012379 + L2 LINE L2 2579 2669 -645 407 332 109 40 chr13 15860982 15861286 -86011883 + L2 LINE L2 2932 3256 -16 201 274 110 118 chr13 15862048 15862285 -86010884 + L2 LINE L2 2954 3188 -84 312 252 47 9 chr13 15862542 15862649 -86010520 + MIR SINE MIR 74 184 -78 227 295 54 60 chr13 15863417 15863566 -86009603 + L2 LINE L2 2702 2849 -465 2039 138 7 7 chr13 15865670 15865974 -86007195 - AluSx SINE Alu -8 304 1 207 179 0 0 chr13 15866467 15866506 -86006663 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 274 0 0 chr13 15867295 15867368 -86005801 + GA-rich Low_complexity Low_complexity 4 76 0 24 93 0 0 chr13 15867634 15867688 -86005481 + AT_rich Low_complexity Low_complexity 1 54 0 198 291 25 25 chr13 15868489 15868568 -86004601 - MIR SINE MIR 0 262 184 904 216 81 16 chr13 15868620 15868652 -86004517 + L1ME3 LINE L1 5695 5723 -439 2175 108 7 3 chr13 15868652 15868958 -86004211 + AluSg SINE Alu 1 307 -3 904 216 81 16 chr13 15868958 15869190 -86003979 + L1ME3 LINE L1 5723 5973 -189 250 143 0 0 chr13 15869195 15869230 -86003939 + Alu SINE Alu 1 35 -267 1310 205 58 61 chr13 15869303 15869664 -86003505 - MLT1A2 LTR MaLR -14 360 1 186 346 70 59 chr13 15869672 15869958 -86003211 - L2 LINE L2 -2110 1204 916 1303 157 9 26 chr13 15870237 15870466 -86002703 + AluJo SINE Alu 71 295 -17 230 326 45 30 chr13 15870893 15871025 -86002144 + L2 LINE L2 2831 2964 -350 1353 174 101 22 chr13 15872359 15872635 -86000534 + AluJb SINE Alu 1 298 -14 2328 113 3 0 chr13 15872773 15873082 -86000087 - AluSg SINE Alu 0 310 1 22 0 0 0 chr13 15873426 15873448 -85999721 + AT_rich Low_complexity Low_complexity 1 22 0 290 270 14 14 chr13 15873516 15873590 -85999579 + MIR SINE MIR 74 147 -61 436 265 12 96 chr13 15874726 15874819 -85998350 - MIR SINE MIR -27 235 160 2203 104 3 0 chr13 15874819 15875107 -85998062 + AluSp SINE Alu 5 293 -20 436 265 12 96 chr13 15875107 15875179 -85997990 - MIR SINE MIR -102 160 84 258 276 106 65 chr13 15875665 15875835 -85997334 - MIR SINE MIR -41 221 45 579 215 44 0 chr13 15877969 15878104 -85995065 + MIR SINE MIR 53 193 -69 38 40 0 27 chr13 15878267 15878301 -85994868 + AT_rich Low_complexity Low_complexity 1 34 -38 1903 124 35 18 chr13 15878301 15878584 -85994585 + AluSx SINE Alu 1 288 -24 38 40 0 27 chr13 15878584 15878623 -85994546 + AT_rich Low_complexity Low_complexity 34 72 0 995 306 98 30 chr13 15878623 15879163 -85994006 + Charlie7 DNA MER1_type 113 689 -1923 388 182 25 66 chr13 15879148 15879269 -85993900 + Charlie7 DNA MER1_type 2497 2612 0 * 279 0 0 0 chr13 15879615 15879646 -85993523 + (TG)n Simple_repeat Simple_repeat 2 32 0 2215 103 7 0 chr13 15880087 15880388 -85992781 + AluY SINE Alu 1 303 -8 821 290 38 76 chr13 15880499 15880975 -85992194 + L2 LINE L2 2851 3308 -5 240 209 0 0 chr13 15881529 15881572 -85991597 + L2 LINE L2 3219 3261 -11 2451 73 3 19 chr13 15882938 15883254 -85989915 + AluY SINE Alu 1 311 0 213 22 0 89 chr13 15883259 15883304 -85989865 + (TAAAAA)n Simple_repeat Simple_repeat 4 44 0 600 212 123 41 chr13 15884144 15884314 -85988855 - L1ME LINE L1 -382 5739 5556 222 319 122 80 chr13 15884643 15885044 -85988125 - L2 LINE L2 -2 3270 2853 204 326 11 65 chr13 15886194 15886286 -85986883 - MIR SINE MIR -95 113 27 189 0 0 0 chr13 15887713 15887734 -85985435 + (GGAA)n Simple_repeat Simple_repeat 2 22 0 270 0 0 0 chr13 15888565 15888595 -85984574 + (CA)n Simple_repeat Simple_repeat 2 31 0 207 361 78 44 chr13 15890531 15890944 -85982225 - L2 LINE L2 -337 2977 2551 463 257 77 22 chr13 15890993 15891176 -85981993 + L1MC/D LINE L1 5625 5817 -1991 295 197 0 118 chr13 15891365 15891441 -85981728 - MER91B DNA MER1_type -129 67 1 1599 175 11 7 chr13 15891900 15892169 -85981000 + AluJb SINE Alu 12 281 -31 192 40 0 0 chr13 15892173 15892198 -85980971 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 581 259 138 0 chr13 15892584 15892773 -85980396 + MIR SINE MIR 38 252 -10 76 51 0 0 chr13 15893356 15893474 -85979695 + AT_rich Low_complexity Low_complexity 1 118 0 259 221 52 39 chr13 15893580 15893657 -85979512 - L1ME4a LINE L1 -108 6013 5936 1795 149 41 16 chr13 15893688 15894003 -85979166 + MER2 DNA MER2_type 22 344 -1 372 43 0 0 chr13 15894004 15894050 -85979119 + (TG)n Simple_repeat Simple_repeat 1 46 0 251 239 14 14 chr13 15894050 15894121 -85979048 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 555 96 0 0 chr13 15896854 15896937 -85976232 + (CA)n Simple_repeat Simple_repeat 2 84 0 6851 86 3 5 chr13 15897979 15898921 -85974248 + L1PB1 LINE L1 5210 6150 -1 2560 167 57 5 chr13 15898949 15899391 -85973778 + LTR32 LTR ERVL 7 471 0 225 108 0 0 chr13 15900181 15900218 -85972951 + (CA)n Simple_repeat Simple_repeat 2 38 0 2328 157 68 30 chr13 15900308 15900748 -85972421 + LTR32 LTR ERVL 15 471 0 306 139 0 0 chr13 15901575 15901618 -85971551 - MER45A DNA AcHobo 0 178 136 848 67 0 0 chr13 15901641 15901746 -85971423 + AluY SINE Alu 206 310 -1 1704 149 103 0 chr13 15901748 15902029 -85971140 + AluJo SINE Alu 1 310 -2 447 251 56 39 chr13 15902171 15902350 -85970819 + L2 LINE L2 3108 3289 -24 2368 101 0 3 chr13 15902609 15902917 -85970252 + AluSg SINE Alu 1 307 -3 1960 140 70 3 chr13 15903286 15903629 -85969540 - L1MB2 LINE L1 -7 6164 5799 620 182 6 136 chr13 15903830 15903910 -85969259 - MER45A DNA AcHobo -1403 178 132 2648 150 56 23 chr13 15903910 15904067 -85969102 + L1MB2 LINE L1 5670 5820 -351 2261 107 0 0 chr13 15904067 15904356 -85968813 + AluSc SINE Alu 1 289 -20 2648 150 56 23 chr13 15904356 15904677 -85968492 + L1MB2 LINE L1 5820 6164 -7 620 182 6 136 chr13 15904677 15904772 -85968397 - MER45A DNA AcHobo -1449 132 26 2290 91 0 0 chr13 15905575 15905860 -85967309 + AluSq SINE Alu 1 285 -28 1019 240 32 16 chr13 15905883 15906133 -85967036 + MIR SINE MIR 9 262 0 1434 233 78 18 chr13 15906544 15906930 -85966239 - MLT1I LTR MaLR 0 409 1 265 214 270 0 chr13 15907401 15907490 -85965679 - L2 LINE L2 0 3272 3160 1928 170 41 27 chr13 15908067 15908432 -85964737 + MLT1A2 LTR MaLR 1 370 -4 2130 136 3 0 chr13 15908631 15908933 -85964236 - AluSx SINE Alu -9 303 1 264 327 26 96 chr13 15910017 15910402 -85962767 - L2 LINE L2 -33 3239 2882 230 255 0 0 chr13 15913262 15913309 -85959860 - MER81 DNA DNA -36 78 32 1138 155 11 5 chr13 15914042 15914229 -85958940 + MER2 DNA MER2_type 3 190 -155 2234 109 0 10 chr13 15914229 15914533 -85958636 + AluSx SINE Alu 1 301 -11 232 211 56 42 chr13 15914602 15914673 -85958496 + MER2 DNA MER2_type 267 338 -7 2418 136 115 14 chr13 15914835 15915254 -85957915 + LOR1b LTR ERV1 1 461 0 5885 134 97 1 chr13 15915273 15916204 -85956965 + LTR28 LTR ERV1 1 1020 0 290 260 67 10 chr13 15916877 15916981 -85956188 + MIR SINE MIR 86 195 -67 837 253 5 31 chr13 15917245 15917295 -85955874 + MER5A DNA MER1_type 1 51 -138 2862 185 18 73 chr13 15917295 15917912 -85955257 + MER119 DNA MER1_type 1 583 0 837 253 5 31 chr13 15917912 15918055 -85955114 + MER5A DNA MER1_type 51 189 0 211 326 52 42 chr13 15919675 15919868 -85953301 + L2 LINE L2 2569 2763 -551 191 302 0 0 chr13 15920371 15920424 -85952745 - L2 LINE L2 -56 3257 3205 334 331 48 0 chr13 15920824 15920948 -85952221 + MIR SINE MIR 26 155 -107 225 211 39 0 chr13 15920975 15921027 -85952142 - MIR SINE MIR -50 212 159 4882 160 14 104 chr13 15921031 15923251 -85949918 - L1MB2 LINE L1 -1 6170 4166 21 0 0 0 chr13 15923708 15923729 -85949440 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr13 15923734 15923762 -85949407 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 5642 93 18 8 chr13 15923762 15924969 -85948200 + SVA Other Other 52 1386 0 248 350 166 14 chr13 15925665 15925882 -85947287 - L2 LINE L2 -505 2809 2560 658 192 212 25 chr13 15926156 15926354 -85946815 - MER46A DNA MER2_type -1 235 1 * 775 149 0 0 chr13 15926242 15926356 -85946813 + MER46A DNA MER2_type 33 146 -90 343 273 36 72 chr13 15926459 15926598 -85946571 - MIR SINE MIR -73 135 2 1308 249 109 31 chr13 15926654 15927141 -85946028 + MLT1H LTR MaLR 25 549 0 258 190 35 17 chr13 15928750 15928808 -85944361 - L2 LINE L2 0 3313 3255 21 0 0 0 chr13 15928870 15928891 -85944278 + AT_rich Low_complexity Low_complexity 1 21 0 2247 96 0 0 chr13 15929113 15929443 -85943726 + AluSx SINE Alu 1 330 0 354 296 94 13 chr13 15929972 15930131 -85943038 + MER5B DNA MER1_type 7 178 0 539 134 4 15 chr13 15930316 15930568 -85942601 + AluJo SINE Alu 1 312 0 225 298 16 24 chr13 15930804 15930928 -85942241 + CT-rich Low_complexity Low_complexity 1 123 0 428 310 89 24 chr13 15931707 15931920 -85941249 - MIR SINE MIR -23 239 13 198 0 0 0 chr13 15931979 15932001 -85941168 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1704 174 3 3 chr13 15932006 15932288 -85940881 - AluJb SINE Alu -30 282 1 298 306 200 30 chr13 15932702 15932967 -85940202 - L3 LINE CR1 -555 1022 713 373 362 27 43 chr13 15932977 15933165 -85940004 + L2 LINE L2 3087 3271 -1 258 210 123 12 chr13 15933304 15933385 -85939784 + MIR SINE MIR 95 184 -78 395 321 9 0 chr13 15936234 15936343 -85936826 - MER81 DNA DNA -1 113 4 3489 174 73 24 chr13 15936666 15937398 -85935771 + LTR1B LTR ERV1 1 785 0 23 33 0 0 chr13 15939016 15939046 -85934123 + AT_rich Low_complexity Low_complexity 1 30 0 277 335 31 37 chr13 15939239 15939430 -85933739 - L2 LINE L2 -927 2387 2198 281 306 151 83 chr13 15941167 15941419 -85931750 + L2 LINE L2 3004 3272 0 645 89 0 0 chr13 15941999 15942078 -85931091 + THE1B LTR MaLR 1 79 -285 935 136 7 0 chr13 15942078 15942218 -85930951 + AluSg/x SINE Alu 166 306 -6 449 289 44 22 chr13 15942232 15942412 -85930757 - MIR SINE MIR -67 195 12 181 428 86 0 chr13 15943144 15943296 -85929873 + L2 LINE L2 3107 3271 -1 965 241 9 5 chr13 15943349 15943565 -85929604 + MER20 DNA MER1_type 1 217 -2 338 0 24 0 chr13 15944847 15944889 -85928280 + (CA)n Simple_repeat Simple_repeat 1 43 0 384 307 20 0 chr13 15945208 15945309 -85927860 + MIR SINE MIR 50 152 -110 1195 191 38 0 chr13 15945324 15945534 -85927635 - MER20 DNA MER1_type -1 218 1 192 261 29 43 chr13 15945761 15945830 -85927339 + MIR SINE MIR 158 225 -37 1454 231 139 25 chr13 15946061 15946537 -85926632 + MLT1G3 LTR MaLR 1 530 0 548 260 96 19 chr13 15948321 15948529 -85924640 + MIR SINE MIR 21 244 -18 263 254 54 54 chr13 15948987 15949117 -85924052 + L2 LINE L2 3174 3303 -10 294 325 102 41 chr13 15949353 15949648 -85923521 - L3 LINE CR1 -1072 505 193 219 308 99 0 chr13 15950529 15950620 -85922549 - L2 LINE L2 -5 3267 3168 1909 131 0 54 chr13 15950935 15951248 -85921921 + AluSx SINE Alu 1 296 -16 325 245 76 3 chr13 15951276 15951393 -85921776 + L1MA9 LINE L1 6167 6290 -4 1411 191 33 46 chr13 15951867 15952170 -85920999 - AluJo SINE Alu -13 299 1 203 42 0 0 chr13 15952955 15952979 -85920190 - L2 LINE L2 -23 3290 3267 185 362 0 0 chr13 15954657 15954726 -85918443 - L3 LINE CR1 -14 1563 1495 625 334 96 30 chr13 15954771 15955136 -85918033 - L3 LINE CR1 -209 1368 980 1572 146 47 36 chr13 15956073 15956348 -85916821 + AluJb SINE Alu 18 295 -17 413 313 87 56 chr13 15956542 15957078 -85916091 + L2 LINE L2 2691 3268 -4 3235 93 7 16 chr13 15957277 15957718 -85915451 + MLT2A1 LTR ERVL 1 437 -7 230 268 83 38 chr13 15958018 15958175 -85914994 + L1ME4a LINE L1 5873 6036 -85 2263 87 16 39 chr13 15958598 15958909 -85914260 - AluSx SINE Alu -4 308 5 230 254 45 0 chr13 15959084 15959151 -85914018 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 2056 137 102 0 chr13 15959447 15959762 -85913407 + MER7A DNA MER2_type 1 345 -1 476 264 0 0 chr13 15960217 15960327 -85912842 - L2 LINE L2 -5 3308 3199 473 316 53 53 chr13 15960540 15960727 -85912442 + MIR SINE MIR 29 215 -47 471 305 63 85 chr13 15961286 15961696 -85911473 + L2 LINE L2 2867 3267 -5 2491 74 0 3 chr13 15962033 15962345 -85910824 - AluY SINE Alu 0 311 1 331 213 50 12 chr13 15962788 15962868 -85910301 - MIR SINE MIR 0 262 180 1597 167 56 24 chr13 15962897 15963184 -85909985 - AluJb SINE Alu -16 296 1 359 145 26 13 chr13 15963184 15963260 -85909909 - MIR SINE MIR -66 196 120 275 306 83 9 chr13 15963511 15963619 -85909550 + L2 LINE L2 2945 3060 -212 400 305 85 0 chr13 15963811 15963968 -85909201 + MIR3 SINE MIR 3 164 -64 465 170 32 0 chr13 15964386 15964480 -85908689 + MER5A DNA MER1_type 9 105 -84 29 84 0 0 chr13 15964718 15964789 -85908380 + AT_rich Low_complexity Low_complexity 1 71 0 5565 107 0 28 chr13 15965374 15966170 -85906999 + L1PA10 LINE L1 4536 5299 -869 2288 122 0 0 chr13 15966170 15966481 -85906688 + AluSx SINE Alu 1 311 -1 5565 107 0 28 chr13 15966481 15966946 -85906223 + L1PA10 LINE L1 5299 5776 -392 738 136 0 0 chr13 15967047 15967183 -85905986 + L1PA10 LINE L1 6045 6180 0 2233 131 0 0 chr13 15967796 15968162 -85905007 - AluSq SINE Alu 0 366 1 2108 127 13 98 chr13 15969732 15970009 -85903160 - MER7A DNA MER2_type -2693 345 109 1776 163 13 16 chr13 15970009 15970322 -85902847 + AluJb SINE Alu 1 312 0 2108 127 13 98 chr13 15970322 15970421 -85902748 - MER7A DNA MER2_type -2929 109 3 487 224 50 37 chr13 15970429 15970597 -85902572 + MIR SINE MIR 40 212 -50 249 325 42 42 chr13 15972645 15972765 -85900404 - MIR3 SINE MIR -52 156 37 198 238 0 0 chr13 15973569 15973611 -85899558 + L2 LINE L2 3271 3312 -1 190 141 35 224 chr13 15973619 15973704 -85899465 - MIR SINE MIR -70 192 124 675 277 25 34 chr13 15974671 15974909 -85898260 - MIR SINE MIR -6 256 21 22 0 0 0 chr13 15976100 15976122 -85897047 + AT_rich Low_complexity Low_complexity 1 22 0 2061 125 0 0 chr13 15976184 15976494 -85896675 + AluSx SINE Alu 1 310 0 275 207 17 0 chr13 15976757 15976815 -85896354 - MIR SINE MIR -100 162 104 438 275 22 89 chr13 15978121 15978390 -85894779 + MIR SINE MIR 1 251 -11 1477 168 17 0 chr13 15978395 15978627 -85894542 - MER46A DNA MER2_type 0 236 1 2131 166 30 0 chr13 15980382 15980755 -85892414 + MLT1B LTR MaLR 7 390 0 207 329 37 12 chr13 15980852 15980934 -85892235 - MIR3 SINE MIR -39 169 86 199 170 0 151 chr13 15981597 15981650 -85891519 - L2 LINE L2 -9 3263 3219 * 622 305 26 34 chr13 15981619 15981852 -85891317 - MIR SINE MIR -17 245 15 248 247 165 21 chr13 15984389 15984486 -85888683 + MER103 DNA DNA 22 132 -34 234 160 0 120 chr13 15984708 15984758 -85888411 - Alu SINE Alu -126 176 133 528 286 32 13 chr13 15986620 15986774 -85886395 - MIR3 SINE MIR -2 206 50 330 26 0 0 chr13 15987244 15987283 -85885886 + (TG)n Simple_repeat Simple_repeat 2 40 0 306 103 0 218 chr13 15987353 15987440 -85885729 + L1MB3 LINE L1 5423 5490 -681 2537 147 2 12 chr13 15987441 15987855 -85885314 + L1MB3 LINE L1 5774 6183 0 1962 153 0 10 chr13 15988586 15988887 -85884282 + AluJo SINE Alu 5 302 -10 457 215 146 15 chr13 15989143 15989273 -85883896 + MIR SINE MIR 6 152 -110 30 0 0 0 chr13 15989698 15989728 -85883441 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 15990558 15990579 -85882590 + AT_rich Low_complexity Low_complexity 1 21 0 204 237 0 0 chr13 15992682 15992720 -85880449 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 244 156 0 0 chr13 15992720 15992765 -85880404 - LTR66 LTR ERVL -172 438 394 440 248 22 72 chr13 15994528 15994703 -85878466 - MIR SINE MIR -63 145 18 1533 254 203 17 chr13 15994835 15995544 -85877625 + L2 LINE L2 1838 2678 -636 699 286 45 31 chr13 15995545 15995832 -85877337 + L2 LINE L2 2949 3239 -74 249 159 0 0 chr13 15995865 15995909 -85877260 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 373 273 57 11 chr13 15995977 15996065 -85877104 - MIR SINE MIR -157 105 14 4704 165 60 2 chr13 15996334 15997586 -85875583 + L1MB7 LINE L1 4865 6183 -1 275 296 74 30 chr13 15997663 15997798 -85875371 + MIR3 SINE MIR 37 177 -31 491 325 66 0 chr13 15997931 15998097 -85875072 + MIR SINE MIR 35 211 -51 656 227 0 8 chr13 15998716 15998848 -85874321 + FLAM_A SINE Alu 1 131 -2 2070 121 13 10 chr13 15999250 15999548 -85873621 + AluSx SINE Alu 1 299 -13 648 175 158 12 chr13 15999558 15999729 -85873440 - MIR SINE MIR 0 262 67 622 270 48 70 chr13 16001187 16001607 -85871562 + L2 LINE L2 2845 3249 -23 21 0 0 0 chr13 16003075 16003096 -85870073 + AT_rich Low_complexity Low_complexity 1 21 0 1803 135 0 18 chr13 16003268 16003542 -85869627 - AluSx SINE Alu -43 269 1 22 0 0 0 chr13 16003925 16003947 -85869222 + AT_rich Low_complexity Low_complexity 1 22 0 888 183 0 23 chr13 16003966 16004141 -85869028 - FRAM SINE Alu -2 174 4 541 290 152 99 chr13 16004359 16004740 -85868429 + L2 LINE L2 2122 2481 -833 1852 159 7 16 chr13 16004740 16005049 -85868120 + AluJb SINE Alu 1 306 -6 541 290 152 99 chr13 16005049 16005436 -85867733 + L2 LINE L2 2481 2931 -383 634 234 72 6 chr13 16005524 16005691 -85867478 + MER5B DNA MER1_type 1 178 0 1082 193 244 52 chr13 16007394 16007799 -85865370 + MLT1F1 LTR MaLR 1 507 -59 1976 120 3 31 chr13 16008053 16008386 -85864783 - AluSx SINE Alu 0 325 1 2087 139 16 68 chr13 16008588 16008685 -85864484 + MER7A DNA MER2_type 1 101 -2937 1999 142 0 35 chr13 16008685 16008995 -85864174 - AluSx SINE Alu -13 299 1 2087 139 16 68 chr13 16008995 16009264 -85863905 + MER7A DNA MER2_type 101 346 0 29 60 0 0 chr13 16011661 16011711 -85861458 + GC_rich Low_complexity Low_complexity 1 50 0 314 221 21 71 chr13 16012098 16012238 -85860931 + C-rich Low_complexity Low_complexity 2 134 0 244 325 202 29 chr13 16014151 16014948 -85858221 + L2 LINE L2 1141 2075 -1239 186 197 76 30 chr13 16015040 16015106 -85858063 + MIR SINE MIR 151 219 -43 610 280 142 19 chr13 16015152 16015420 -85857749 + L2 LINE L2 3013 3313 0 192 379 9 9 chr13 16015465 16015581 -85857588 + L2 LINE L2 2358 2473 -841 185 218 129 118 chr13 16015697 16015867 -85857302 + L2 LINE L2 2912 3083 -189 29 0 0 0 chr13 16016197 16016226 -85856943 + AT_rich Low_complexity Low_complexity 1 29 0 399 261 84 25 chr13 16016375 16016578 -85856591 - L1ME4a LINE L1 -217 5904 5690 855 305 12 4 chr13 16017905 16018164 -85855005 + MIR SINE MIR 2 262 0 196 350 33 42 chr13 16018829 16018949 -85854220 + MIR SINE MIR 25 143 -65 273 321 37 0 chr13 16019569 16019650 -85853519 - MIR SINE MIR -126 136 53 883 138 15 0 chr13 16019664 16019794 -85853375 + AluSq SINE Alu 23 154 -159 7666 130 82 101 chr13 16019794 16021512 -85851657 + pTR5 LTR ERV1 747 2432 -6 1163 145 0 0 chr13 16021512 16021671 -85851498 + AluSg/x SINE Alu 138 296 -16 2201 104 0 0 chr13 16022199 16022496 -85850673 - AluY SINE Alu -14 297 1 327 167 0 0 chr13 16022698 16022752 -85850417 + Tigger2 DNA MER2_type 3 56 -2662 2320 73 3 35 chr13 16022755 16023069 -85850100 - AluY SINE Alu -7 304 1 2072 132 120 57 chr13 16023071 16023483 -85849686 + Tigger2 DNA MER2_type 2267 2708 -10 2444 108 134 8 chr13 16023483 16023863 -85849306 - MSTA LTR MaLR 0 428 1 2072 132 120 57 chr13 16023863 16023875 -85849294 + Tigger2 DNA MER2_type 2708 2718 0 2627 136 75 5 chr13 16024020 16024418 -85848751 - MSTB LTR MaLR 0 426 1 205 242 45 15 chr13 16024524 16024590 -85848579 + L2 LINE L2 3225 3292 -21 523 316 174 4 chr13 16024639 16024886 -85848283 + L2 LINE L2 3006 3294 -19 232 314 107 14 chr13 16024989 16025129 -85848040 + L2 LINE L2 749 901 -2413 282 209 93 6 chr13 16025569 16025656 -85847513 + L2 LINE L2 2890 2980 -292 367 309 57 8 chr13 16025693 16025816 -85847353 + L2 LINE L2 3184 3312 -1 779 197 23 0 chr13 16026148 16026280 -85846889 + AluJo SINE Alu 1 135 -177 23 0 0 0 chr13 16026367 16026390 -85846779 + AT_rich Low_complexity Low_complexity 1 23 0 2553 49 0 0 chr13 16026572 16026877 -85846292 + AluY SINE Alu 1 305 -6 370 210 0 0 chr13 16030301 16030363 -85842806 - L2 LINE L2 0 3313 3252 207 0 0 0 chr13 16030492 16030515 -85842654 + (CAG)n Simple_repeat Simple_repeat 1 23 0 324 231 13 39 chr13 16030544 16030622 -85842547 - L2 LINE L2 -9 3263 3188 462 200 38 9 chr13 16030968 16031073 -85842096 + MER53 DNA DNA 1 108 -81 181 292 0 0 chr13 16031765 16031813 -85841356 + L2 LINE L2 3219 3266 -6 686 217 102 6 chr13 16032000 16032166 -85841003 + MIR SINE MIR 64 245 -17 2250 108 3 10 chr13 16032572 16032886 -85840283 - AluSx SINE Alu 0 312 1 327 365 40 14 chr13 16033582 16033730 -85839439 + MIR3 SINE MIR 48 199 -9 21 0 0 0 chr13 16035375 16035396 -85837773 + AT_rich Low_complexity Low_complexity 1 21 0 5185 150 43 9 chr13 16035459 16036430 -85836739 + L1MB3 LINE L1 5175 6181 -2 193 306 159 71 chr13 16036779 16036949 -85836220 - MER5A DNA MER1_type 0 189 5 374 181 0 96 chr13 16037366 16037409 -85835760 - MER94 DNA DNA -40 94 63 2651 85 13 75 chr13 16037409 16037807 -85835362 - THE1C LTR MaLR -2 373 1 374 181 0 96 chr13 16037807 16037857 -85835312 - MER94 DNA DNA -71 63 10 382 279 0 73 chr13 16038199 16038335 -85834834 - L2 LINE L2 0 3313 3188 812 157 54 7 chr13 16038453 16038600 -85834569 + FAM SINE Alu 18 171 -14 256 253 140 43 chr13 16038716 16038902 -85834267 - L2 LINE L2 -1177 2137 1934 239 312 65 0 chr13 16039621 16039714 -85833455 - L3b LINE CR1 -97 1486 1388 2479 77 0 3 chr13 16040475 16040786 -85832383 + AluSg SINE Alu 1 310 0 2002 156 0 0 chr13 16040794 16041095 -85832074 + AluJb SINE Alu 1 301 -11 694 229 45 22 chr13 16041614 16041793 -85831376 - MIR SINE MIR -74 188 6 303 302 58 0 chr13 16041845 16041931 -85831238 - L2 LINE L2 -19 3294 3204 2135 91 0 88 chr13 16042076 16042405 -85830764 + AluSx SINE Alu 1 300 -12 241 275 47 123 chr13 16042640 16042876 -85830293 - L2 LINE L2 -209 3063 2846 248 320 46 39 chr13 16043102 16043255 -85829914 - MER103 DNA DNA -12 154 1 2255 109 3 3 chr13 16043430 16043741 -85829428 + AluSx SINE Alu 1 311 -1 283 301 48 41 chr13 16044406 16044552 -85828617 + L2 LINE L2 3117 3263 -50 668 161 0 88 chr13 16045223 16045360 -85827809 + FLAM_C SINE Alu 1 125 -8 2116 124 6 43 chr13 16045434 16045756 -85827413 + AluSx SINE Alu 1 310 -2 180 0 0 0 chr13 16047100 16047120 -85826049 + (TA)n Simple_repeat Simple_repeat 2 21 0 330 26 0 0 chr13 16047192 16047231 -85825938 + (TA)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr13 16047437 16047462 -85825707 + (A)n Simple_repeat Simple_repeat 1 25 0 2346 87 30 0 chr13 16047548 16047848 -85825321 + AluSx SINE Alu 1 309 -3 30 0 0 0 chr13 16047848 16047878 -85825291 + AT_rich Low_complexity Low_complexity 1 30 0 1430 208 31 10 chr13 16048987 16049276 -85823893 - AluJo SINE Alu -17 295 1 262 236 85 66 chr13 16049364 16049470 -85823699 - L2 LINE L2 -15 3257 3150 2237 187 52 14 chr13 16049510 16049948 -85823221 - LTR32 LTR ERVL 0 471 17 2359 95 0 7 chr13 16050924 16051230 -85821939 - AluSq SINE Alu -9 304 1 2259 113 0 0 chr13 16054671 16054964 -85818205 - AluSx SINE Alu -19 293 1 215 294 76 0 chr13 16055724 16055816 -85817353 + MIR SINE MIR 94 192 -70 188 254 36 0 chr13 16056007 16056062 -85817107 - MIR SINE MIR -119 143 87 999 211 25 5 chr13 16056548 16056752 -85816417 - MER3 DNA MER1_type -1 208 1 26 30 0 0 chr13 16057657 16057690 -85815479 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr13 16058304 16058324 -85814845 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1532 160 7 44 chr13 16058327 16058620 -85814549 - AluJo SINE Alu -25 287 6 820 176 0 0 chr13 16058643 16058768 -85814401 - AluJb SINE Alu -187 125 1 793 287 61 32 chr13 16059228 16059604 -85813565 + L1MEc LINE L1 92 478 -5918 1987 215 64 16 chr13 16059625 16060063 -85813106 + LTR40b LTR ERVL 4 462 0 486 243 36 0 chr13 16060064 16060175 -85812994 + HERVL40 LTR ERVL 1 115 -5415 1422 215 120 3 chr13 16060177 16060502 -85812667 - MLT1A1 LTR MaLR 0 365 3 719 231 143 37 chr13 16060514 16060730 -85812439 + HERVL40 LTR ERVL 114 352 -5178 1629 240 120 10 chr13 16060737 16061552 -85811617 + L1ME1 LINE L1 4920 5830 -332 1587 142 21 31 chr13 16061557 16061845 -85811324 + L1MA9 LINE L1 5750 6034 -278 473 252 18 87 chr13 16061850 16061885 -85811284 + L1ME1 LINE L1 5832 5868 -298 2362 83 0 22 chr13 16061885 16062198 -85810971 + AluY SINE Alu 1 306 -5 473 252 18 87 chr13 16062198 16062380 -85810789 + L1ME1 LINE L1 5868 6034 -132 2379 151 17 18 chr13 16062406 16062932 -85810237 - L1MA9 LINE L1 -4 6296 5673 2264 88 3 10 chr13 16062938 16063235 -85809934 - AluY SINE Alu -16 295 1 398 214 106 4 chr13 16063243 16063365 -85809804 + L1ME1 LINE L1 6050 6334 0 437 195 48 22 chr13 16063377 16063535 -85809634 + L1MC4 LINE L1 6879 7039 -956 780 306 50 55 chr13 16063790 16064248 -85808921 + LTR16B LTR ERVL 9 464 0 515 321 19 19 chr13 16064305 16064520 -85808649 - L3 LINE CR1 -754 823 609 1769 126 6 94 chr13 16064921 16065263 -85807906 + LTR1B LTR ERV1 1 312 -514 2602 143 69 7 chr13 16065397 16065858 -85807311 + LTR1B LTR ERV1 337 826 0 4704 162 60 0 chr13 16065977 16066958 -85806211 + L1MB7 LINE L1 5149 6183 -1 275 296 74 30 chr13 16067035 16067170 -85805999 + MIR3 SINE MIR 37 177 -31 491 325 66 0 chr13 16067303 16067469 -85805700 + MIR SINE MIR 35 211 -51 656 227 0 8 chr13 16068088 16068220 -85804949 + FLAM_A SINE Alu 1 131 -2 2070 121 13 10 chr13 16068622 16068920 -85804249 + AluSx SINE Alu 1 299 -13 648 190 145 10 chr13 16068930 16069129 -85804040 - MIR SINE MIR 0 262 35 622 270 48 70 chr13 16070559 16070979 -85802190 + L2 LINE L2 2845 3249 -23 21 0 0 0 chr13 16072447 16072468 -85800701 + AT_rich Low_complexity Low_complexity 1 21 0 2506 37 31 0 chr13 16073112 16073406 -85799763 + AluY SINE Alu 1 303 -8 416 314 57 23 chr13 16073953 16074128 -85799041 + MER5A DNA MER1_type 6 186 -3 243 294 171 14 chr13 16074321 16074467 -85798702 + MIR SINE MIR 79 247 -15 1942 130 7 17 chr13 16074771 16075064 -85798105 - AluJo SINE Alu -16 296 7 429 332 29 46 chr13 16075654 16075892 -85797277 + MIR SINE MIR 28 261 -1 2527 172 84 32 chr13 16076687 16077043 -85796126 - L1MA9 LINE L1 -23 6143 5807 321 26 0 0 chr13 16077043 16077081 -85796088 + (TG)n Simple_repeat Simple_repeat 1 38 0 2527 172 84 32 chr13 16077081 16077096 -85796073 - L1MA9 LINE L1 -359 5807 5794 2246 117 0 0 chr13 16077096 16077403 -85795766 - AluSx SINE Alu -5 307 1 2527 172 84 32 chr13 16077403 16077668 -85795501 - L1MA9 LINE L1 -372 5794 5477 1931 135 3 46 chr13 16078727 16079052 -85794117 - AluSp SINE Alu -2 311 1 275 227 0 30 chr13 16079139 16079205 -85793964 + L2 LINE L2 3250 3313 0 930 291 126 22 chr13 16079503 16079705 -85793464 + L2 LINE L2 2823 3003 -310 1645 226 44 14 chr13 16079705 16080068 -85793101 + MLT1A2 LTR MaLR 1 374 0 930 291 126 22 chr13 16080068 16080309 -85792860 + L2 LINE L2 3003 3312 -1 240 35 0 0 chr13 16080395 16080424 -85792745 + (TAA)n Simple_repeat Simple_repeat 3 31 0 2159 119 7 0 chr13 16080494 16080796 -85792373 + AluSx SINE Alu 1 304 -8 374 292 29 64 chr13 16081267 16081438 -85791731 + MIR3 SINE MIR 37 201 -7 188 243 271 22 chr13 16081733 16081914 -85791255 + MIR SINE MIR 8 233 -29 202 188 31 16 chr13 16082224 16082288 -85790881 + (CA)n Simple_repeat Simple_repeat 2 66 0 240 302 0 0 chr13 16082298 16082361 -85790808 + MER5A DNA MER1_type 127 189 0 242 310 90 1 chr13 16082424 16082556 -85790613 + MIR SINE MIR 6 147 -75 475 307 59 7 chr13 16083015 16083168 -85790001 + MER91A DNA MER1_type 1 161 -35 205 283 0 0 chr13 16083194 16083240 -85789929 + MER91A DNA MER1_type 151 196 0 315 49 0 0 chr13 16083353 16083394 -85789775 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 261 329 94 41 chr13 16083395 16083565 -85789604 - L2 LINE L2 -14 3258 3080 1789 175 3 10 chr13 16083857 16084160 -85789009 + AluJo SINE Alu 1 301 -11 597 103 0 0 chr13 16084275 16084353 -85788816 - MADE1 DNA Mariner -2 78 1 25 51 0 0 chr13 16084361 16084400 -85788769 + AT_rich Low_complexity Low_complexity 1 39 0 1073 203 6 0 chr13 16085189 16085366 -85787803 - MER45A DNA AcHobo 0 178 1 301 257 0 14 chr13 16085677 16085747 -85787422 - MIR3 SINE MIR -3 205 137 1935 66 0 4 chr13 16086058 16086299 -85786870 + AluY SINE Alu 71 310 -1 1062 214 13 9 chr13 16086445 16086674 -85786495 - MIR SINE MIR -21 241 12 672 129 138 0 chr13 16087190 16087306 -85785863 + FLAM_C SINE Alu 1 132 -1 1088 162 25 34 chr13 16087598 16087802 -85785367 - AluJb SINE Alu -21 291 90 1346 130 190 8 chr13 16088742 16088995 -85784174 + AluSg SINE Alu 1 299 -1 2285 109 0 0 chr13 16090637 16090940 -85782229 - AluSx SINE Alu -9 303 1 501 327 18 65 chr13 16091758 16092033 -85781136 - MIR SINE MIR 0 262 1 2812 209 58 21 chr13 16092230 16092853 -85780316 + MER82 DNA MER2_type 8 653 0 2368 172 14 2 chr13 16094008 16094445 -85778724 - L1MB2 LINE L1 -2 6169 5728 1015 293 36 38 chr13 16094571 16095070 -85778099 + L2 LINE L2 2810 3307 -6 945 288 8 4 chr13 16095069 16095312 -85777857 - MIR SINE MIR -13 249 6 * 952 103 7 0 chr13 16097521 16097666 -85775503 - L1MC1 LINE L1 -361 5972 5827 2931 232 82 33 chr13 16097670 16099378 -85773791 + L1MD1 LINE L1 1838 3632 -2908 * 4135 157 53 17 chr13 16099347 16099506 -85773663 + L1MD1 LINE L1 5522 5674 -2528 189 0 0 0 chr13 16099506 16099527 -85773642 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4135 157 53 17 chr13 16099527 16099613 -85773556 + L1MD1 LINE L1 5674 5755 -2447 2139 137 0 3 chr13 16099613 16099926 -85773243 + AluSx SINE Alu 1 312 0 4135 157 53 17 chr13 16099926 16100681 -85772488 + L1MD1 LINE L1 5755 8147 -55 2441 42 0 0 chr13 16100951 16101258 -85771911 + AluY SINE Alu 2 308 0 202 288 0 45 chr13 16101985 16102051 -85771118 - L2 LINE L2 0 3313 3251 2504 202 29 59 chr13 16102433 16103815 -85769354 + L1MB8 LINE L1 4856 6178 0 28338 108 10 9 chr13 16103834 16108039 -85765130 + L1P LINE L1 11 4219 -1927 10256 73 0 0 chr13 16108191 16110333 -85762836 + L1PA6 LINE L1 4010 6154 0 230 336 96 0 chr13 16110397 16110501 -85762668 + MIR SINE MIR 20 133 -129 1076 296 69 17 chr13 16111677 16112139 -85761030 + MER20B DNA MER1_type 1 486 -297 524 192 130 11 chr13 16112784 16112961 -85760208 + MER20B DNA MER1_type 522 719 -64 424 284 73 65 chr13 16113287 16113525 -85759644 - MIR SINE MIR 0 262 21 378 209 0 0 chr13 16113813 16113880 -85759289 + MER33 DNA MER1_type 2 68 -256 2478 67 3 0 chr13 16113900 16114200 -85758969 + AluSp SINE Alu 1 301 -12 2907 174 25 3 chr13 16114202 16114884 -85758285 + L1MA4 LINE L1 4789 5484 -745 * 3841 88 6 37 chr13 16114879 16115540 -85757629 + L1MA1 LINE L1 5137 5785 -517 595 54 0 3 chr13 16115541 16115763 -85757406 + AluY SINE Alu 1 295 -17 3199 88 10 83 chr13 16115765 16116164 -85757005 + L1MA1 LINE L1 5769 6115 -187 2422 46 0 0 chr13 16116164 16116445 -85756724 - AluY SINE Alu -30 281 1 3199 88 10 83 chr13 16116445 16116621 -85756548 + L1MA1 LINE L1 6115 6302 0 4169 155 27 10 chr13 16116637 16117404 -85755765 + L1MA4 LINE L1 5477 6256 -44 1077 139 71 52 chr13 16117464 16117731 -85755438 + MER33 DNA MER1_type 53 324 0 298 298 58 25 chr13 16117879 16118000 -85755169 + MIR SINE MIR 67 191 -71 182 263 221 0 chr13 16118004 16118099 -85755070 - L2 LINE L2 -1 3312 3197 2305 119 0 0 chr13 16120299 16120610 -85752559 + AluSx SINE Alu 1 311 -1 265 278 56 74 chr13 16120659 16120821 -85752348 + MIR SINE MIR 91 249 -13 347 262 24 0 chr13 16120989 16121073 -85752096 - L2 LINE L2 -1 3271 3186 566 51 0 13 chr13 16121094 16121173 -85751996 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 267 288 54 45 chr13 16121929 16122040 -85751129 + L2 LINE L2 3198 3309 -4 1970 183 91 35 chr13 16123237 16123701 -85749468 + LTR2B LTR ERV1 1 490 0 1656 163 27 14 chr13 16126221 16126515 -85746654 + AluJb SINE Alu 1 298 -14 879 284 93 99 chr13 16126577 16127006 -85746163 + L2 LINE L2 1862 2292 -1022 846 123 7 43 chr13 16127006 16127144 -85746025 - FLAM_C SINE Alu 0 133 1 879 284 93 99 chr13 16127144 16127632 -85745537 + L2 LINE L2 2292 2773 -541 334 225 56 0 chr13 16127681 16127752 -85745417 + MIR SINE MIR 78 152 -56 25 0 0 0 chr13 16128576 16128601 -85744568 + AT_rich Low_complexity Low_complexity 1 25 0 994 150 14 59 chr13 16129159 16129325 -85743844 + L1MB3 LINE L1 5974 6129 -54 2366 78 3 0 chr13 16129325 16129621 -85743548 + AluY SINE Alu 1 297 -14 994 150 14 59 chr13 16129621 16129674 -85743495 + L1MB3 LINE L1 6129 6183 0 2289 103 0 16 chr13 16129832 16130142 -85743027 + AluSg SINE Alu 1 305 -5 1697 175 3 14 chr13 16130712 16131003 -85742166 + AluJb SINE Alu 1 288 -24 2020 158 60 26 chr13 16131789 16132207 -85740962 - MSTB1 LTR MaLR 0 432 1 950 111 53 5 chr13 16134288 16134478 -85738691 - L1MA6 LINE L1 -4 6296 6098 7472 160 35 11 chr13 16134480 16136775 -85736394 - L1MA6 LINE L1 -285 6015 3672 224 309 59 70 chr13 16136934 16137098 -85736071 - L2 LINE L2 -212 3060 2899 1730 177 10 13 chr13 16137098 16137408 -85735761 - AluJo SINE Alu -3 309 1 224 309 59 70 chr13 16137408 16137499 -85735670 - L2 LINE L2 -373 2899 2808 212 244 24 61 chr13 16138084 16138166 -85735003 - L2 LINE L2 -1355 1959 1881 372 352 56 11 chr13 16138778 16138957 -85734212 + MIR SINE MIR 1 187 -75 874 288 136 0 chr13 16140375 16140691 -85732478 + LTR16B LTR ERVL 106 464 0 215 378 0 54 chr13 16140735 16140846 -85732323 - MIR SINE MIR -69 139 35 226 282 14 14 chr13 16140851 16140922 -85732247 - L2 LINE L2 -2 3311 3241 382 355 18 0 chr13 16140931 16141100 -85732069 - L2 LINE L2 -568 2746 2575 187 258 81 0 chr13 16141157 16141219 -85731950 - L2 LINE L2 -31 3282 3216 397 223 32 0 chr13 16141785 16141879 -85731290 + MER58B DNA MER1_type 20 116 -225 1981 109 25 0 chr13 16141880 16142000 -85731169 + AluSc SINE Alu 1 116 -197 180 0 0 0 chr13 16142000 16142020 -85731149 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1981 109 25 0 chr13 16142020 16142205 -85730964 + AluSc SINE Alu 116 313 0 1055 140 52 68 chr13 16142420 16142481 -85730688 - MLT1B LTR MaLR 0 390 330 2222 109 0 0 chr13 16142481 16142790 -85730379 - AluSx SINE Alu 0 309 1 1055 140 52 68 chr13 16142790 16142976 -85730193 - MLT1B LTR MaLR -60 330 145 962 167 69 0 chr13 16142976 16143150 -85730019 + MLT1A1 LTR MaLR 109 294 -71 503 216 0 0 chr13 16143187 16143284 -85729885 + MER58B DNA MER1_type 239 335 -6 405 331 116 8 chr13 16143452 16143694 -85729475 + HAL1b LINE L1 110 377 -971 484 306 35 75 chr13 16143698 16143850 -85729319 + HAL1b LINE L1 437 593 -755 1949 174 46 3 chr13 16143850 16144200 -85728969 - MLT1A1 LTR MaLR 0 365 1 484 306 35 75 chr13 16144200 16144554 -85728615 + HAL1b LINE L1 593 923 -425 1005 82 0 0 chr13 16144564 16144699 -85728470 - AluY SINE Alu -3 308 174 364 204 142 28 chr13 16144700 16144876 -85728293 + HAL1b LINE L1 910 1105 -243 214 296 0 0 chr13 16144905 16144949 -85728220 - MER91A DNA MER1_type 0 196 153 222 283 83 0 chr13 16145048 16145108 -85728061 - MER91A DNA MER1_type -114 82 18 1205 106 0 12 chr13 16145116 16145276 -85727893 - AluSg SINE Alu -8 304 147 436 123 0 0 chr13 16145279 16145344 -85727825 - AluSg SINE Alu -253 65 1 1723 249 43 28 chr13 16145391 16145970 -85727199 - L1ME1 LINE L1 -7 6553 5966 662 277 88 22 chr13 16145967 16146475 -85726694 - L1ME1 LINE L1 -4517 2023 1546 * 2146 103 3 20 chr13 16146509 16146810 -85726359 + AluSc SINE Alu 3 298 -11 1319 235 15 18 chr13 16147165 16147559 -85725610 + L1ME1 LINE L1 5774 6161 -5 462 254 37 15 chr13 16147651 16147785 -85725384 - MIR SINE MIR -19 243 107 1794 176 33 43 chr13 16148695 16149252 -85723917 - MLT2A2 LTR ERVL 0 554 1 2722 191 4 4 chr13 16149395 16149881 -85723288 - MER66B LTR ERV1 0 486 1 1997 142 10 0 chr13 16150033 16150322 -85722847 + AluSq SINE Alu 1 292 -21 312 91 0 0 chr13 16150322 16150366 -85722803 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 435 236 22 22 chr13 16150403 16150585 -85722584 + L1MC5 LINE L1 7725 7906 -55 198 296 244 61 chr13 16150844 16150869 -85722300 - L2 LINE L2 -1 3271 3252 1827 136 50 4 chr13 16150869 16151149 -85722020 + AluSx SINE Alu 1 293 -19 198 296 244 61 chr13 16151149 16151238 -85721931 - L2 LINE L2 -20 3252 3136 403 300 198 55 chr13 16151289 16151497 -85721672 + L2 LINE L2 2437 2614 -700 2462 62 10 0 chr13 16151497 16151803 -85721366 - AluY SINE Alu -2 309 1 403 300 198 55 chr13 16151803 16151994 -85721175 + L2 LINE L2 2614 2893 -421 21 71 0 0 chr13 16152205 16152247 -85720922 + AT_rich Low_complexity Low_complexity 1 42 0 366 286 40 16 chr13 16152315 16152441 -85720728 + MIR SINE MIR 107 235 -27 386 266 42 10 chr13 16152621 16152813 -85720356 - L1MC5 LINE L1 -40 7921 7724 2663 106 0 92 chr13 16153301 16153841 -85719328 - MER1A DNA MER1_type -39 494 1 395 226 108 0 chr13 16153990 16154092 -85719077 - MIR SINE MIR -20 242 130 188 360 65 49 chr13 16154313 16154638 -85718531 + L2 LINE L2 2175 2504 -810 1646 198 9 75 chr13 16154663 16155087 -85718082 + MSTD LTR MaLR 1 396 0 604 308 31 18 chr13 16155395 16155619 -85717550 - MIR SINE MIR -24 238 12 190 333 74 0 chr13 16155822 16155903 -85717266 - L2 LINE L2 -5 3267 3181 245 295 58 58 chr13 16155953 16156109 -85717060 - MIR SINE MIR -75 187 32 198 0 0 0 chr13 16156185 16156207 -85716962 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6936 45 2 0 chr13 16156216 16157453 -85715716 - L1PA7 LINE L1 -7 6147 4926 21 0 0 0 chr13 16158272 16158293 -85714876 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 16158457 16158492 -85714677 + AT_rich Low_complexity Low_complexity 1 35 0 446 118 0 0 chr13 16158492 16158568 -85714601 - L1MA2 LINE L1 0 6304 6229 26 0 0 0 chr13 16158595 16158621 -85714548 + AT_rich Low_complexity Low_complexity 1 26 0 655 210 12 119 chr13 16158687 16158930 -85714239 - MER20 DNA MER1_type -2 217 1 252 234 125 0 chr13 16159402 16159466 -85713703 - L2 LINE L2 0 3272 3201 323 294 59 7 chr13 16159561 16159697 -85713472 - MIR SINE MIR -71 191 49 541 167 0 0 chr13 16159703 16159793 -85713376 - LOR1b LTR ERV1 0 461 372 470 213 37 0 chr13 16159805 16159913 -85713256 + LOR1b LTR ERV1 348 459 -2 9720 140 26 13 chr13 16159915 16161635 -85711534 + LOR1a-int LTR ERV1 1 1743 -6377 7779 132 40 22 chr13 16161636 16161978 -85711191 + LOR1a-int LTR ERV1 2621 2955 -3803 2379 97 3 3 chr13 16161978 16162287 -85710882 + AluSc SINE Alu 1 309 0 7779 132 40 22 chr13 16162287 16163429 -85709740 + LOR1a-int LTR ERV1 2955 6166 -592 1521 153 8 0 chr13 16163610 16163858 -85709311 + LOR1a-int LTR ERV1 6830 7079 -1041 900 198 12 0 chr13 16163881 16164048 -85709121 + MER49 LTR ERV1 1 169 -754 682 112 0 19 chr13 16164048 16164155 -85709014 + LOR1a-int LTR ERV1 7995 8099 -21 2734 128 25 73 chr13 16164168 16164690 -85708479 + LOR1a LTR ERV1 1 497 0 444 244 87 17 chr13 16164783 16165013 -85708156 - Charlie2 DNA MER1_type -6 2856 2611 1955 176 0 0 chr13 16165029 16165336 -85707833 + AluJb SINE Alu 1 307 -5 1437 248 49 65 chr13 16165391 16166015 -85707154 + L1MC5 LINE L1 5255 5868 -1940 2873 117 26 7 chr13 16166015 16166435 -85706734 + MSTA LTR MaLR 1 428 0 1437 248 49 65 chr13 16166435 16166504 -85706665 + L1MC5 LINE L1 5868 5937 -1871 21 57 0 0 chr13 16166706 16166741 -85706428 + AT_rich Low_complexity Low_complexity 1 35 0 1683 225 53 81 chr13 16166951 16167998 -85705171 + L1MC5 LINE L1 6476 7492 -469 313 216 29 29 chr13 16168049 16168151 -85705018 + L1MC5 LINE L1 7481 7582 -379 1806 60 0 21 chr13 16168174 16168408 -85704761 + AluY SINE Alu 82 310 -1 192 77 0 0 chr13 16168526 16168552 -85704617 + (A)n Simple_repeat Simple_repeat 1 26 0 822 223 31 21 chr13 16168562 16168853 -85704316 + L1MC5 LINE L1 7620 7913 -48 391 208 69 82 chr13 16168934 16169237 -85703932 - Charlie2 DNA MER1_type -322 2540 2242 2260 164 40 16 chr13 16169966 16170416 -85702753 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr13 16170521 16170543 -85702626 + AT_rich Low_complexity Low_complexity 1 22 0 2997 167 43 53 chr13 16170587 16171306 -85701863 + LTR8A LTR ERV1 1 712 -15 1422 148 109 0 chr13 16172854 16173137 -85700032 - MER44D DNA MER2_type -25 584 1 641 245 50 0 chr13 16173602 16173761 -85699408 + MIR SINE MIR 71 237 -25 228 290 0 0 chr13 16173774 16173836 -85699333 + (TTG)n Simple_repeat Simple_repeat 3 64 0 348 319 163 43 chr13 16174385 16175037 -85698132 + L2 LINE L2 1837 2566 -748 298 329 77 21 chr13 16175198 16175341 -85697828 + L2 LINE L2 2911 3061 -211 192 77 0 0 chr13 16178179 16178205 -85694964 + (CA)n Simple_repeat Simple_repeat 1 26 0 306 264 298 6 chr13 16178683 16178849 -85694320 + MIR SINE MIR 1 223 -39 2365 83 0 13 chr13 16178849 16179161 -85694008 + AluY SINE Alu 1 308 -3 306 264 298 6 chr13 16179161 16179172 -85693997 + MIR SINE MIR 223 230 -32 2142 107 0 7 chr13 16179172 16179462 -85693707 + AluY SINE Alu 1 288 -23 1258 112 12 0 chr13 16179463 16179633 -85693536 + AluSg/x SINE Alu 133 304 -8 428 200 33 33 chr13 16179881 16180001 -85693168 + MER94 DNA DNA 15 134 0 476 305 51 13 chr13 16180581 16180787 -85692382 - MIR SINE MIR -44 218 7 667 56 0 11 chr13 16181555 16181645 -85691524 - MER4E LTR ERV1 0 766 678 616 116 42 0 chr13 16181695 16181790 -85691379 - MER4B LTR ERV1 -85 525 427 2533 110 6 88 chr13 16181857 16182356 -85690813 - MER4B LTR ERV1 -152 458 1 503 296 140 37 chr13 16182489 16182840 -85690329 - L2 LINE L2 0 3313 2927 309 328 17 17 chr13 16182836 16182952 -85690217 - L2 LINE L2 -25 3247 3132 * 2204 165 15 22 chr13 16183071 16183477 -85689692 + MER57A LTR ERV1 1 403 0 2236 118 25 3 chr13 16184377 16184742 -85688427 - MER39B LTR ERV1 -23 630 258 696 182 0 47 chr13 16184743 16184891 -85688278 - FLAM_C SINE Alu -2 141 1 1824 98 8 0 chr13 16184891 16185157 -85688012 - MER39B LTR ERV1 -385 268 1 321 256 83 38 chr13 16185166 16185299 -85687870 - MIR SINE MIR -14 248 110 299 213 43 64 chr13 16186156 16186250 -85686919 - MIR SINE MIR -150 112 21 21 0 0 0 chr13 16186345 16186366 -85686803 + AT_rich Low_complexity Low_complexity 1 21 0 399 41 0 0 chr13 16186662 16186711 -85686458 + (CA)n Simple_repeat Simple_repeat 2 50 0 452 288 29 14 chr13 16187680 16187819 -85685350 + MIR SINE MIR 16 156 -106 23 40 0 0 chr13 16188289 16188314 -85684855 + AT_rich Low_complexity Low_complexity 1 25 0 822 280 107 20 chr13 16188663 16189145 -85684024 + MLT1H LTR MaLR 1 537 -12 24 77 0 0 chr13 16190472 16190524 -85682645 + AT_rich Low_complexity Low_complexity 1 52 0 26 0 0 0 chr13 16190656 16190682 -85682487 + AT_rich Low_complexity Low_complexity 1 26 0 224 194 32 0 chr13 16191500 16191562 -85681607 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 389 265 82 14 chr13 16191860 16192007 -85681162 - MIR SINE MIR -94 168 12 323 243 27 14 chr13 16192031 16192105 -85681064 + MIR SINE MIR 40 114 -148 338 127 14 42 chr13 16192500 16192572 -85680597 + L1M3 LINE L1 5385 5454 -849 2199 122 51 25 chr13 16192572 16192964 -85680205 + MSTA LTR MaLR 27 428 0 1504 168 25 38 chr13 16192964 16193279 -85679890 + L1M3 LINE L1 5463 5773 -410 398 249 249 35 chr13 16194780 16194884 -85678285 + MIR SINE MIR 8 88 -174 2423 76 0 7 chr13 16194884 16195185 -85677984 - AluY SINE Alu -2 309 11 398 249 249 35 chr13 16195185 16195281 -85677888 + MIR SINE MIR 88 251 -11 5102 166 44 18 chr13 16196398 16197475 -85675694 - L1MC2 LINE L1 -13 6331 5225 23 0 0 0 chr13 16197475 16197498 -85675671 + AT_rich Low_complexity Low_complexity 1 23 0 5445 148 22 6 chr13 16197500 16199181 -85673988 - L1PB3 LINE L1 -6 6148 4441 1569 213 56 2 chr13 16199180 16199589 -85673580 - L1MC2 LINE L1 -905 5241 4811 * 1967 136 0 36 chr13 16200600 16200902 -85672267 + AluJo SINE Alu 1 291 -21 2269 157 56 7 chr13 16201259 16201691 -85671478 - MSTB2 LTR MaLR -4 453 1 2190 123 3 3 chr13 16201918 16202220 -85670949 + AluSg SINE Alu 1 302 -8 1741 166 0 21 chr13 16202378 16202667 -85670502 - AluJb SINE Alu -16 296 14 22 0 0 0 chr13 16203187 16203209 -85669960 + AT_rich Low_complexity Low_complexity 1 22 0 820 196 55 0 chr13 16203466 16203629 -85669540 + MER2 DNA MER2_type 2 173 -172 329 169 70 28 chr13 16203717 16203788 -85669381 + MER2 DNA MER2_type 272 345 0 2277 131 37 3 chr13 16203871 16204254 -85668915 - MER57A LTR ERV1 -6 397 2 644 165 0 0 chr13 16206276 16206373 -85666796 - AluJ/FLAM SINE Alu -213 99 3 195 114 0 0 chr13 16206447 16206482 -85666687 - MER5C DNA MER1_type -57 267 233 441 272 53 0 chr13 16206526 16206640 -85666529 - MER5C DNA MER1_type -204 120 1 401 272 110 13 chr13 16206640 16206868 -85666301 - L1MC2 LINE L1 -2735 3411 3162 756 284 64 21 chr13 16206889 16207010 -85666159 + MIR SINE MIR 17 131 -131 2221 128 0 3 chr13 16207010 16207314 -85665855 + AluSq SINE Alu 1 303 -10 756 284 64 21 chr13 16207314 16207428 -85665741 + MIR SINE MIR 131 262 0 507 263 148 5 chr13 16207432 16207649 -85665520 - L1MC2 LINE L1 -2986 3160 2913 1029 210 25 52 chr13 16207654 16208091 -85665078 - MLT1D LTR MaLR 0 505 10 200 135 27 0 chr13 16208207 16208244 -85664925 + A-rich Low_complexity Low_complexity 1 38 0 2261 107 3 0 chr13 16208288 16208588 -85664581 - AluY SINE Alu -10 301 1 362 301 94 27 chr13 16208618 16208913 -85664256 + L1ME LINE L1 4147 4421 -1725 1739 185 11 0 chr13 16208913 16209199 -85663970 - AluJo SINE Alu -23 289 1 362 301 94 27 chr13 16209199 16209766 -85663403 + L1ME LINE L1 4421 5067 -1079 2530 33 0 20 chr13 16209797 16210097 -85663072 + AluY SINE Alu 1 294 -17 1181 276 68 43 chr13 16211951 16212881 -85660288 + L1MC4 LINE L1 7090 8042 0 259 289 56 0 chr13 16212990 16213080 -85660089 + MIR SINE MIR 59 153 -109 364 295 133 20 chr13 16213530 16213832 -85659337 + L1ME LINE L1 5302 5637 -529 2469 71 0 7 chr13 16213833 16214143 -85659026 - AluY SINE Alu -3 308 1 180 288 51 34 chr13 16216331 16216390 -85656779 - L2 LINE L2 -7 3265 3206 306 260 14 0 chr13 16216490 16216563 -85656606 - MER91B DNA MER1_type 0 190 117 299 215 139 90 chr13 16216565 16216709 -85656460 - MER91B DNA MER1_type -16 174 24 261 303 156 8 chr13 16217463 16217585 -85655584 - MIR SINE MIR -56 206 67 234 0 0 0 chr13 16218546 16218572 -85654597 + (TG)n Simple_repeat Simple_repeat 2 27 0 695 333 148 30 chr13 16218731 16219677 -85653492 - L2 LINE L2 -13 3300 2236 189 262 0 0 chr13 16220381 16220442 -85652727 + GA-rich Low_complexity Low_complexity 2 62 0 * 308 205 25 33 chr13 16220439 16220561 -85652608 + G-rich Low_complexity Low_complexity 5 125 0 207 167 0 0 chr13 16220553 16220595 -85652574 + GA-rich Low_complexity Low_complexity 4 45 0 * 291 367 24 101 chr13 16220901 16221239 -85651930 - L2 LINE L2 -1 3271 2960 258 281 110 0 chr13 16221495 16221577 -85651592 + MIR SINE MIR 166 256 -6 313 283 141 13 chr13 16221749 16221986 -85651183 - MLT1E2 LTR MaLR -369 257 6 406 325 154 31 chr13 16221993 16222375 -85650794 - L2 LINE L2 -15 3298 2870 522 223 97 34 chr13 16222540 16222715 -85650454 - L2 LINE L2 -11 3302 3117 2977 161 40 0 chr13 16222996 16223575 -85649594 - L1MB3 LINE L1 -10 6173 5572 5375 125 35 19 chr13 16224906 16225893 -85647276 - L1MA4 LINE L1 -8 6292 5290 293 361 83 0 chr13 16226346 16226479 -85646690 - MIR3 SINE MIR -62 146 3 2244 93 0 3 chr13 16226843 16227134 -85646035 - AluY SINE Alu -11 300 11 2213 162 28 45 chr13 16227347 16227374 -85645795 + LOR1b LTR ERV1 1 27 -434 1736 168 42 30 chr13 16227374 16227707 -85645462 + MER1B DNA MER1_type 1 337 0 2213 162 28 45 chr13 16227707 16228148 -85645021 + LOR1b LTR ERV1 27 461 0 424 289 105 76 chr13 16228184 16229090 -85644079 + L1MEd LINE L1 326 1257 -4862 328 270 143 0 chr13 16229074 16229263 -85643906 + HAL1 LINE L1 1351 1566 -941 * 2120 140 0 19 chr13 16229263 16229578 -85643591 + AluSx SINE Alu 1 309 -3 421 132 44 0 chr13 16229708 16229776 -85643393 + AluJ/FLAM SINE Alu 1 71 -241 230 310 108 19 chr13 16230457 16230615 -85642554 + MIR SINE MIR 12 183 -79 316 298 64 64 chr13 16231795 16231966 -85641203 - MIR SINE MIR -70 192 22 396 0 0 0 chr13 16232531 16232575 -85640594 + (TG)n Simple_repeat Simple_repeat 2 45 0 298 145 58 0 chr13 16232675 16232744 -85640425 + AluSc SINE Alu 215 287 -12 1678 171 14 10 chr13 16233254 16233546 -85639623 - AluJo SINE Alu -19 293 1 252 281 56 11 chr13 16233567 16233656 -85639513 - L3b LINE CR1 -340 1243 1151 239 208 14 83 chr13 16234504 16234576 -85638593 + MIR3 SINE MIR 101 167 -41 220 326 96 30 chr13 16235433 16235569 -85637600 - MIR3 SINE MIR -73 135 14 207 167 0 0 chr13 16235704 16235746 -85637423 + GA-rich Low_complexity Low_complexity 3 44 0 346 256 67 110 chr13 16236258 16236474 -85636695 - MIR SINE MIR -8 254 44 180 47 47 47 chr13 16236507 16236550 -85636619 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 318 87 0 0 chr13 16236665 16236711 -85636458 + (CA)n Simple_repeat Simple_repeat 1 46 0 417 20 0 0 chr13 16236965 16237015 -85636154 + (TG)n Simple_repeat Simple_repeat 2 51 0 679 137 77 11 chr13 16237447 16237629 -85635540 + Charlie5 DNA MER1_type 2387 2580 -32 225 113 75 57 chr13 16238126 16238179 -85634990 + MER113 DNA MER1_type? 350 403 -118 219 200 27 13 chr13 16238381 16238456 -85634713 + (CTCA)n Simple_repeat Simple_repeat 4 79 0 234 289 0 62 chr13 16238460 16238557 -85634612 - L2 LINE L2 -2 3270 3180 8053 44 0 1 chr13 16238684 16239684 -85633485 - L1P LINE L1 -2789 3357 2359 4026 38 0 4 chr13 16239684 16240160 -85633009 + L1PA5 LINE L1 5385 5858 -296 2618 39 0 0 chr13 16240929 16241236 -85631933 - AluYa5 SINE Alu -4 307 1 1710 189 16 70 chr13 16241410 16241796 -85631373 + MLT1A1 LTR MaLR 1 365 0 511 264 16 0 chr13 16242150 16242275 -85630894 - MER94 DNA DNA 0 134 8 207 265 0 0 chr13 16242330 16242379 -85630790 + L2 LINE L2 3186 3234 -38 948 232 65 90 chr13 16242401 16242897 -85630272 + MLT1H1 LTR MaLR 19 554 -1 385 260 29 0 chr13 16243457 16243561 -85629608 + MIR SINE MIR 91 197 -65 4437 215 40 14 chr13 16243642 16245238 -85627931 + L1MC4 LINE L1 4366 5403 -743 2444 148 63 5 chr13 16244938 16245385 -85627784 + L1MB7 LINE L1 5695 6167 -17 * 289 325 56 25 chr13 16246336 16246496 -85626673 + L2 LINE L2 3145 3309 -4 376 259 110 59 chr13 16246768 16247023 -85626146 + L2 LINE L2 3045 3312 -1 249 271 0 29 chr13 16247023 16247093 -85626076 + GA-rich Low_complexity Low_complexity 4 71 0 2408 77 7 3 chr13 16247734 16248044 -85625125 + AluY SINE Alu 1 311 0 472 292 9 0 chr13 16248076 16248189 -85624980 - L2 LINE L2 -4 3268 3155 3272 132 20 4 chr13 16248641 16249135 -85624034 - L1MB3 LINE L1 -1 6182 5681 4016 173 55 21 chr13 16249381 16249961 -85623208 + MER21B LTR ERV1 1 612 -251 2387 87 7 16 chr13 16249961 16250271 -85622898 - AluSx SINE Alu -5 307 1 4016 173 55 21 chr13 16250271 16250414 -85622755 + MER21B LTR ERV1 612 749 -114 198 0 0 0 chr13 16250415 16250437 -85622732 + (CTTG)n Simple_repeat Simple_repeat 1 22 0 1713 181 3 13 chr13 16251344 16251642 -85621527 - AluJo SINE Alu -17 295 1 777 190 38 22 chr13 16251680 16251864 -85621305 + MER53 DNA DNA 1 187 -2 2148 104 82 25 chr13 16252223 16252578 -85620591 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr13 16252662 16252697 -85620472 + AT_rich Low_complexity Low_complexity 1 35 0 2553 51 0 0 chr13 16252739 16253035 -85620134 + AluY SINE Alu 1 296 -15 390 324 49 49 chr13 16253589 16253836 -85619333 + L1ME4a LINE L1 5347 5593 -528 949 178 0 41 chr13 16253842 16254011 -85619158 - AluJb SINE Alu -17 295 134 311 283 58 17 chr13 16254348 16254468 -85618701 + L1ME4a LINE L1 5963 6087 -34 2198 99 0 0 chr13 16255392 16255684 -85617485 - AluY SINE Alu -19 292 1 2351 93 0 7 chr13 16257043 16257353 -85615816 - AluY SINE Alu -3 308 1 2091 109 3 10 chr13 16257355 16257649 -85615520 - AluSx SINE Alu -20 292 1 25 0 0 0 chr13 16258067 16258092 -85615077 + AT_rich Low_complexity Low_complexity 1 25 0 2483 73 7 0 chr13 16258933 16259236 -85613933 - AluSc SINE Alu -2 307 3 186 213 0 21 chr13 16259690 16259737 -85613432 + MIR SINE MIR 60 105 -157 1750 200 59 75 chr13 16260208 16260768 -85612401 - L1ME2 LINE L1 -323 5910 5360 274 256 102 47 chr13 16261029 16261244 -85611925 - L1ME2 LINE L1 -916 5299 5073 1111 123 7 0 chr13 16261405 16261584 -85611585 - AluSg/x SINE Alu 0 305 126 2428 80 0 0 chr13 16261586 16261888 -85611281 - AluSc SINE Alu -7 302 1 1870 89 89 7 chr13 16261888 16262159 -85611010 - AluY SINE Alu -5 306 14 1903 211 67 125 chr13 16262162 16262430 -85610739 - L1ME2 LINE L1 -2343 3872 3590 2341 85 3 0 chr13 16262430 16262725 -85610444 + AluSq SINE Alu 8 303 -10 1903 211 67 125 chr13 16262725 16262826 -85610343 - L1ME2 LINE L1 -2625 3590 3485 2465 69 0 10 chr13 16262826 16263132 -85610037 - AluY SINE Alu -8 303 1 1903 211 67 125 chr13 16263132 16263945 -85609224 - L1ME2 LINE L1 -2730 3485 2776 2327 115 0 0 chr13 16263945 16264257 -85608912 + AluSx SINE Alu 1 312 0 1903 211 67 125 chr13 16264257 16264435 -85608734 - L1ME2 LINE L1 -3439 2776 2589 1796 152 28 3 chr13 16264457 16264746 -85608423 - AluSq SINE Alu -17 296 1 369 228 16 93 chr13 16264754 16265000 -85608169 - L1ME2 LINE L1 -4130 2266 2040 368 380 22 0 chr13 16265630 16265814 -85607355 - L1ME2 LINE L1 -6030 366 179 1143 179 85 123 chr13 16265969 16266359 -85606810 + MER4C LTR ERV1 91 465 0 223 305 60 131 chr13 16266670 16267106 -85606063 + L2 LINE L2 2851 3255 -17 205 288 93 42 chr13 16267915 16268033 -85605136 + MIR SINE MIR 16 139 -69 2158 178 37 16 chr13 16268883 16269311 -85603858 + LTR23 LTR ERV1 1 437 0 204 156 0 188 chr13 16269592 16269656 -85603513 - L2 LINE L2 0 3272 3221 188 93 47 47 chr13 16269785 16269828 -85603341 + L3 LINE CR1 1060 1102 -475 22 35 0 0 chr13 16271049 16271078 -85602091 + AT_rich Low_complexity Low_complexity 1 29 0 2416 78 7 3 chr13 16271345 16271651 -85601518 - AluY SINE Alu -4 307 1 1852 161 0 3 chr13 16271653 16271944 -85601225 - AluJb SINE Alu -20 292 3 2643 170 27 29 chr13 16272050 16272574 -85600595 - L1MC2 LINE L1 -2 6342 5820 3330 165 185 31 chr13 16272577 16273890 -85599279 - pTR5 LTR ERV1 0 2438 747 1433 128 60 4 chr13 16273890 16274125 -85599044 - L1MC2 LINE L1 -518 5826 5579 788 250 72 119 chr13 16274342 16274917 -85598252 + MLT1H1 LTR MaLR 1 555 0 2369 74 0 10 chr13 16275038 16275337 -85597832 - AluY SINE Alu -15 296 1 33 0 0 0 chr13 16275339 16275372 -85597797 + AT_rich Low_complexity Low_complexity 1 33 0 269 293 114 32 chr13 16275922 16276045 -85597124 - L2 LINE L2 -4 3268 3136 1903 133 14 7 chr13 16276929 16277208 -85595961 - AluSx SINE Alu -19 293 13 585 311 10 5 chr13 16277274 16277467 -85595702 + Charlie8 DNA MER1_type 1 194 -2223 765 85 57 0 chr13 16277701 16277807 -85595362 + AluSg/x SINE Alu 197 308 -2 2262 107 10 0 chr13 16281514 16281822 -85591347 + AluSx SINE Alu 1 311 -1 2075 119 14 0 chr13 16281837 16282123 -85591046 + AluSc SINE Alu 1 290 -19 245 318 88 36 chr13 16282693 16282885 -85590284 + L3 LINE CR1 248 449 -1128 5587 43 5 0 chr13 16283139 16283772 -85589397 - L1PA8 LINE L1 -10 6162 5527 1499 194 11 0 chr13 16283900 16284207 -85588962 - AluJo SINE Alu 0 326 17 1204 311 89 16 chr13 16284752 16285257 -85587912 + L3 LINE CR1 400 941 -636 385 316 53 8 chr13 16285303 16285436 -85587733 - L3 LINE CR1 -1028 549 411 2389 105 0 0 chr13 16285840 16286146 -85587023 + AluSg SINE Alu 1 306 -4 457 253 124 21 chr13 16286612 16286798 -85586371 + MIR SINE MIR 58 262 0 271 268 52 57 chr13 16287173 16287367 -85585802 - L1MC5 LINE L1 -74 7887 7695 2380 163 12 15 chr13 16287471 16287875 -85585294 - MER57A LTR ERV1 0 403 1 756 179 0 14 chr13 16287956 16288096 -85585073 + MER104 DNA Tc2 28 165 -15 406 235 70 0 chr13 16289073 16289188 -85583981 + MER94 DNA DNA 12 134 0 648 343 85 50 chr13 16289188 16289352 -85583817 + L2 LINE L2 1779 1936 -1378 2118 125 0 10 chr13 16289352 16289655 -85583514 - AluSx SINE Alu -4 308 9 648 343 85 50 chr13 16289655 16290163 -85583006 + L2 LINE L2 1936 2474 -840 352 314 131 0 chr13 16290736 16290911 -85582258 + L2 LINE L2 2470 2667 -647 403 145 0 0 chr13 16292081 16292143 -85581026 - AluSp/q SINE Alu -86 227 166 610 180 22 43 chr13 16292865 16293004 -85580165 + LTR45 LTR ERV1 390 525 0 2332 90 6 10 chr13 16293092 16293403 -85579766 + AluSp SINE Alu 1 310 -3 1365 201 56 88 chr13 16293923 16294470 -85578699 + MER39 LTR ERV1 5 705 -2 234 209 0 0 chr13 16294993 16295036 -85578133 + LTR30 LTR ERV1 1 43 -679 1027 111 19 167 chr13 16295041 16295311 -85577858 + LTR12 LTR ERV1 49 278 -436 325 237 31 21 chr13 16295311 16295408 -85577761 + LTR30 LTR ERV1 546 643 -79 713 130 0 0 chr13 16295410 16295510 -85577659 + LTR12 LTR ERV1 615 714 0 648 193 0 62 chr13 16295847 16295992 -85577177 + MLT1E2 LTR MaLR 69 204 -420 1570 235 74 17 chr13 16295995 16296467 -85576702 + MER84 LTR ERVI 1 499 -8 1079 265 12 4 chr13 16296599 16296856 -85576313 + MLT1E2 LTR MaLR 368 626 0 1714 152 7 0 chr13 16297075 16297344 -85575825 + AluSq SINE Alu 9 279 -34 623 80 0 0 chr13 16297444 16297532 -85575637 - L1PB2 LINE L1 -115 6036 5949 256 287 43 11 chr13 16298057 16298151 -85575018 - L1ME LINE L1 -501 5620 5524 2563 14 3 0 chr13 16301184 16301487 -85571682 + AluYa5 SINE Alu 1 304 0 3214 180 40 32 chr13 16301491 16302208 -85570961 + L1MB7 LINE L1 5457 6179 -5 216 0 0 0 chr13 16302316 16302340 -85570829 + (T)n Simple_repeat Simple_repeat 1 24 0 2572 228 42 35 chr13 16302709 16303402 -85569767 + L1ME1 LINE L1 5479 6334 0 22 0 0 0 chr13 16303535 16303557 -85569612 + AT_rich Low_complexity Low_complexity 1 22 0 456 51 0 0 chr13 16304097 16304156 -85569013 + (TA)n Simple_repeat Simple_repeat 2 60 0 222 150 0 0 chr13 16304255 16304295 -85568874 + (TA)n Simple_repeat Simple_repeat 2 41 0 232 156 0 0 chr13 16304303 16304348 -85568821 - L1MC4 LINE L1 -1339 6703 6659 24 0 0 0 chr13 16306031 16306055 -85567114 + AT_rich Low_complexity Low_complexity 1 24 0 193 244 0 0 chr13 16306218 16306259 -85566910 + L2 LINE L2 3261 3301 -12 933 133 0 15 chr13 16306435 16306612 -85566557 - FLAM_C SINE Alu 0 175 1 190 330 70 20 chr13 16306685 16306785 -85566384 - L2 LINE L2 0 3272 3168 310 147 29 0 chr13 16306836 16306904 -85566265 + (TA)n Simple_repeat Simple_repeat 1 70 0 209 319 147 56 chr13 16306950 16307182 -85565987 - L2 LINE L2 -216 3056 2804 339 214 262 16 chr13 16307540 16307666 -85565503 + MER5B DNA MER1_type 22 178 0 225 266 177 13 chr13 16307709 16307788 -85565381 - MIR SINE MIR -94 114 23 1225 193 15 50 chr13 16308761 16309020 -85564149 + MIR SINE MIR 13 262 0 2148 98 31 3 chr13 16309149 16309435 -85563734 + AluSx SINE Alu 1 294 -18 484 72 48 84 chr13 16309583 16309666 -85563503 + MADE1 DNA Mariner 1 80 0 545 325 11 26 chr13 16310628 16310819 -85562350 - MIR3 SINE MIR -11 197 10 233 29 29 0 chr13 16310918 16310952 -85562217 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1664 123 119 0 chr13 16311043 16311295 -85561874 + AluSx SINE Alu 1 282 -30 1993 114 0 0 chr13 16311368 16311630 -85561539 + AluSq SINE Alu 39 300 -13 2424 71 0 10 chr13 16312402 16312712 -85560457 - AluY SINE Alu -4 307 1 291 340 72 7 chr13 16313215 16313368 -85559801 - MIR SINE MIR 0 262 100 651 278 9 57 chr13 16313391 16313579 -85559590 - MIR SINE MIR -48 214 36 2180 93 0 54 chr13 16313579 16313892 -85559277 - AluSg1 SINE Alu -13 296 1 651 278 9 57 chr13 16313892 16313915 -85559254 - MIR SINE MIR -226 36 13 2096 126 3 16 chr13 16314614 16314931 -85558238 + AluSq SINE Alu 1 313 0 1998 116 3 39 chr13 16315689 16315999 -85557170 - AluSx SINE Alu -9 303 5 1795 99 12 24 chr13 16316722 16316975 -85556194 + AluSq SINE Alu 1 250 -63 1189 54 7 7 chr13 16316975 16317123 -85556046 + MER4B LTR ERV1 463 610 0 396 268 19 79 chr13 16317317 16317634 -85555535 - HAL1 LINE L1 -1333 1174 877 330 239 112 9 chr13 16317760 16317973 -85555196 + L1ME LINE L1 5568 5854 -267 1026 195 41 1 chr13 16318418 16318740 -85554429 - MER93b LTR ERV1 0 373 6 1977 150 0 10 chr13 16318800 16319100 -85554069 - AluSx SINE Alu -15 297 1 1682 146 58 85 chr13 16319543 16319921 -85553248 + L1MB1 LINE L1 5693 6060 -108 22 0 0 0 chr13 16320057 16320079 -85553090 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 16321007 16321028 -85552141 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 16321100 16321123 -85552046 + AT_rich Low_complexity Low_complexity 1 23 0 206 346 211 0 chr13 16321689 16321793 -85551376 + L2 LINE L2 3127 3252 -20 183 214 71 0 chr13 16321802 16321844 -85551325 + L3 LINE CR1 1530 1574 -3 186 274 145 48 chr13 16322001 16322125 -85551044 - MIR SINE MIR -3 259 124 1448 126 5 5 chr13 16324536 16324743 -85548426 + AluSq SINE Alu 1 207 -106 251 325 0 17 chr13 16325358 16325478 -85547691 + (TA)n Simple_repeat Simple_repeat 1 118 0 207 184 41 0 chr13 16325585 16325634 -85547535 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 854 233 115 84 chr13 16326167 16326519 -85546650 - LTR48B LTR ERV1 0 595 215 1813 97 0 12 chr13 16326519 16326766 -85546403 - AluSx SINE Alu -15 297 54 854 233 115 84 chr13 16326766 16326943 -85546226 - LTR48B LTR ERV1 -380 215 45 623 138 21 0 chr13 16326943 16327037 -85546132 + MER2 DNA MER2_type 2 97 -248 1512 198 0 30 chr13 16327037 16327335 -85545834 + AluJo SINE Alu 1 289 -23 182 91 30 0 chr13 16327339 16327372 -85545797 + (TA)n Simple_repeat Simple_repeat 2 35 0 219 36 0 0 chr13 16327372 16327400 -85545769 + (CA)n Simple_repeat Simple_repeat 2 29 0 225 162 0 0 chr13 16327401 16327438 -85545731 - MER2 DNA MER2_type -226 119 83 185 154 26 0 chr13 16327444 16327483 -85545686 + (TA)n Simple_repeat Simple_repeat 1 40 0 357 24 0 0 chr13 16327484 16327526 -85545643 + (TG)n Simple_repeat Simple_repeat 2 43 0 1302 222 134 82 chr13 16327537 16328251 -85544918 + LTR1B LTR ERV1 41 983 -37 451 175 0 12 chr13 16328307 16328387 -85544782 + MER4A LTR ERV1 20 98 -566 1776 136 47 23 chr13 16328387 16328724 -85544445 + MER4A LTR ERV1 261 664 0 720 241 88 32 chr13 16328751 16329000 -85544169 + MER2 DNA MER2_type 83 345 0 492 171 0 23 chr13 16329001 16329095 -85544074 - MER34C LTR ERV1 -503 82 4 316 145 0 79 chr13 16329106 16329182 -85543987 - L1ME4a LINE L1 -54 6067 5998 457 280 66 19 chr13 16329283 16329540 -85543629 - L1ME4a LINE L1 -281 5840 5572 933 125 0 0 chr13 16329540 16329699 -85543470 - AluY SINE Alu 0 316 158 259 236 0 42 chr13 16329836 16329908 -85543261 + MLT1C LTR MaLR 399 467 0 2379 96 0 0 chr13 16330188 16330481 -85542688 + AluSg SINE Alu 1 293 -17 210 37 0 0 chr13 16332164 16332191 -85540978 + (CA)n Simple_repeat Simple_repeat 2 28 0 1600 139 70 55 chr13 16333395 16333740 -85539429 - LOR1b LTR ERV1 -80 381 32 1877 151 0 50 chr13 16333753 16334072 -85539097 - MER1B DNA MER1_type 0 339 37 736 296 40 12 chr13 16334739 16334986 -85538183 + MIR SINE MIR 2 255 -7 1781 247 95 11 chr13 16335153 16335680 -85537489 - MLT1G LTR MaLR -11 579 9 2412 128 14 3 chr13 16335949 16336307 -85536862 + MER4B LTR ERV1 227 588 -22 1145 99 324 0 chr13 16336307 16336520 -85536649 + LTR12 LTR ERV1 1 282 -432 305 240 0 0 chr13 16336521 16336596 -85536573 + LTR30 LTR ERV1 550 624 -98 1206 93 57 3 chr13 16336596 16336788 -85536381 + LTR12 LTR ERV1 472 660 -54 2479 84 0 0 chr13 16336788 16337096 -85536073 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 16338101 16338122 -85535047 + AT_rich Low_complexity Low_complexity 1 21 0 1468 201 150 35 chr13 16338586 16339159 -85534010 + MER39 LTR ERV1 4 707 0 188 280 20 0 chr13 16339160 16339210 -85533959 - MIR SINE MIR -73 135 85 974 153 64 15 chr13 16340054 16340257 -85532912 - L1M4 LINE L1 -934 5212 5000 261 0 0 0 chr13 16340843 16340872 -85532297 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 14117 188 60 11 chr13 16341440 16346733 -85526436 - L1MA4 LINE L1 -7 6181 580 1586 215 3 3 chr13 16346733 16347026 -85526143 - AluJo SINE Alu -19 293 1 14117 188 60 11 chr13 16347026 16347285 -85525884 - L1MA4 LINE L1 -5608 580 335 845 331 3 48 chr13 16348479 16348794 -85524375 - L1MA4 LINE L1 -5614 341 42 2103 131 7 0 chr13 16348794 16349092 -85524077 - AluSx SINE Alu -12 300 1 845 331 3 48 chr13 16349092 16349132 -85524037 - L1MA4 LINE L1 -5913 42 2 251 163 0 0 chr13 16352516 16352559 -85520610 + MLT1K LTR MaLR 546 588 0 204 324 171 0 chr13 16352649 16352754 -85520415 + L2 LINE L2 3150 3272 0 788 128 0 64 chr13 16353064 16353252 -85519917 + (TTC)n Simple_repeat Simple_repeat 1 176 0 243 268 28 14 chr13 16353357 16353428 -85519741 + MER5B DNA MER1_type 7 78 -100 2174 138 0 0 chr13 16353430 16353742 -85519427 - AluSx SINE Alu 0 312 1 200 291 18 0 chr13 16354651 16354706 -85518463 + MIR3 SINE MIR 111 166 -42 10453 183 32 21 chr13 16354706 16357131 -85516038 + L1M1 LINE L1 3280 5743 -1822 2319 74 7 7 chr13 16357131 16357428 -85515741 + AluY SINE Alu 1 297 -14 10453 183 32 21 chr13 16357428 16357583 -85515586 + L1M1 LINE L1 5743 5895 -1670 1582 176 0 46 chr13 16357571 16357900 -85515269 + L1MD2 LINE L1 5529 5842 -517 * 1526 236 80 70 chr13 16357900 16358487 -85514682 + MLT1E2 LTR MaLR 1 624 -2 2124 200 66 22 chr13 16358489 16358763 -85514406 + L1MD2 LINE L1 5838 6145 -214 1704 137 53 66 chr13 16358763 16359143 -85514026 + THE1C LTR MaLR 1 375 0 2124 200 66 22 chr13 16359143 16359367 -85513802 + L1MD2 LINE L1 6145 6358 -1 34 24 0 0 chr13 16359390 16359431 -85513738 + AT_rich Low_complexity Low_complexity 1 41 0 593 230 36 0 chr13 16359539 16359678 -85513491 - Charlie7 DNA MER1_type -2141 471 328 2342 165 58 48 chr13 16359682 16360180 -85512989 - MLT1D LTR MaLR 0 505 3 548 306 49 61 chr13 16360186 16360513 -85512656 - Charlie7 DNA MER1_type -2289 323 1 1486 176 85 48 chr13 16360589 16360941 -85512228 - MLT1A1 LTR MaLR 0 365 1 312 244 90 0 chr13 16360997 16361075 -85512094 - MIR SINE MIR -116 146 62 362 296 9 26 chr13 16363180 16363295 -85509874 + MER5A DNA MER1_type 51 163 -26 348 268 89 32 chr13 16363199 16363322 -85509847 - MER5A DNA MER1_type -59 130 1 * 237 288 261 0 chr13 16363326 16363437 -85509732 - MIR3 SINE MIR -51 157 18 326 338 70 25 chr13 16363552 16363709 -85509460 + L3b LINE CR1 1412 1575 -8 231 103 0 0 chr13 16364475 16364514 -85508655 + (TA)n Simple_repeat Simple_repeat 1 39 0 187 149 21 21 chr13 16364558 16364605 -85508564 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 1219 167 99 111 chr13 16365858 16365926 -85507243 - MLT1B LTR MaLR 0 390 323 2068 113 3 7 chr13 16365926 16366260 -85506909 + AluSx SINE Alu 1 333 0 1219 167 99 111 chr13 16366260 16366584 -85506585 - MLT1B LTR MaLR -67 323 1 732 91 20 0 chr13 16366597 16366696 -85506473 + AluSg/x SINE Alu 197 297 -13 297 307 88 7 chr13 16367018 16367155 -85506014 + MIR SINE MIR 64 211 -51 200 330 91 0 chr13 16367843 16367931 -85505238 - L2 LINE L2 -43 3229 3134 345 296 0 113 chr13 16369414 16369524 -85503645 + MIR SINE MIR 20 109 -153 2303 75 0 0 chr13 16369524 16369828 -85503341 + AluSc SINE Alu 1 304 0 345 296 0 113 chr13 16369828 16369875 -85503294 + MIR SINE MIR 109 160 -102 258 282 71 12 chr13 16370626 16370711 -85502458 + L2 LINE L2 3209 3298 -15 242 325 69 96 chr13 16371144 16371235 -85501934 + L2 LINE L2 212 304 -3010 2226 174 62 2 chr13 16371235 16371637 -85501532 - MSTB LTR MaLR 0 426 1 242 325 69 96 chr13 16371637 16371818 -85501351 + L2 LINE L2 304 476 -2838 2122 134 0 7 chr13 16371818 16372124 -85501045 - AluSx SINE Alu -8 304 1 242 325 69 96 chr13 16372124 16372185 -85500984 + L2 LINE L2 476 537 -2777 376 296 24 53 chr13 16372249 16372418 -85500751 + L2 LINE L2 2220 2383 -931 2446 136 32 17 chr13 16372966 16373371 -85499798 - LTR57 LTR ERVL 0 411 1 1650 158 40 4 chr13 16373886 16374198 -85498971 - AluSx SINE Alu 0 322 1 3127 173 49 2 chr13 16375083 16375673 -85497496 - L1MB2 LINE L1 -16 6155 5538 21 0 0 0 chr13 16375726 16375747 -85497422 + AT_rich Low_complexity Low_complexity 1 21 0 377 20 20 0 chr13 16376271 16376321 -85496848 + (TG)n Simple_repeat Simple_repeat 2 52 0 1172 208 32 7 chr13 16376397 16376681 -85496488 + L1ME2 LINE L1 4569 4859 -1287 205 296 19 0 chr13 16377042 16377096 -85496073 + L2 LINE L2 3151 3205 -67 2310 94 10 0 chr13 16377294 16377603 -85495566 + AluSx SINE Alu 1 312 0 711 153 30 0 chr13 16378293 16378424 -85494745 - MER53 DNA DNA 0 189 55 506 222 131 17 chr13 16378430 16378606 -85494563 + L1MB8 LINE L1 5983 6178 0 270 295 179 27 chr13 16379139 16379251 -85493918 - L2 LINE L2 -1 3271 3143 4817 100 33 12 chr13 16380657 16381386 -85491783 + L1PB2 LINE L1 5406 6149 -2 21 0 0 0 chr13 16381386 16381407 -85491762 + AT_rich Low_complexity Low_complexity 1 21 0 3941 248 88 15 chr13 16381544 16383846 -85489323 + L1M3d LINE L1 802 3181 -3201 956 214 6 0 chr13 16383849 16384031 -85489138 - MLT2B1 LTR ERVL -317 203 21 1622 133 61 33 chr13 16384039 16384165 -85489004 + L1MB1 LINE L1 5830 5951 -217 2325 163 42 7 chr13 16384165 16384575 -85488594 + MSTB LTR MaLR 3 426 0 1622 133 61 33 chr13 16384575 16384778 -85488391 + L1MB1 LINE L1 5951 6168 0 322 231 19 58 chr13 16384884 16384988 -85488181 - MLT1C LTR MaLR -366 101 2 1427 186 82 48 chr13 16385032 16385409 -85487760 + MLT1B LTR MaLR 1 390 0 1174 261 88 15 chr13 16386046 16386375 -85486794 + MLT1E3 LTR MaLR 270 622 -2 2409 226 108 40 chr13 16386566 16387501 -85485668 + L1ME2 LINE L1 5163 6158 -6 2131 90 4 7 chr13 16387528 16387806 -85485363 + AluSx SINE Alu 1 277 -35 213 47 70 0 chr13 16387806 16387849 -85485320 + (CAA)n Simple_repeat Simple_repeat 3 48 0 503 284 89 48 chr13 16388564 16388856 -85484313 + L2 LINE L2 3006 3309 -4 21 36 0 0 chr13 16388866 16388894 -85484275 + AT_rich Low_complexity Low_complexity 1 28 0 2177 123 0 3 chr13 16388950 16389259 -85483910 - AluSp SINE Alu -5 308 1 1680 207 0 0 chr13 16389283 16389602 -85483567 - AluJb SINE Alu 0 320 2 1484 195 34 84 chr13 16390343 16390819 -85482350 + MLT1C LTR MaLR 1 452 -15 487 205 134 9 chr13 16391278 16391390 -85481779 + FLAM_A SINE Alu 1 126 -7 435 207 333 0 chr13 16392519 16392654 -85480515 - MER5A DNA MER1_type -1 188 9 221 253 110 117 chr13 16392724 16392878 -85480291 + L2 LINE L2 3094 3246 -26 385 309 66 22 chr13 16393976 16394112 -85479057 + MIR SINE MIR 1 142 -120 2042 125 0 0 chr13 16394435 16394754 -85478415 + AluSx SINE Alu 5 323 0 584 274 85 40 chr13 16394868 16395091 -85478078 + MLT1J2 LTR MaLR 1 233 -217 793 246 48 56 chr13 16395091 16395589 -85477580 - MER39 LTR ERV1 0 787 5 260 322 22 61 chr13 16395598 16395778 -85477391 + MLT1J1 LTR MaLR 241 413 -33 2043 135 6 6 chr13 16395780 16396092 -85477077 - AluSq SINE Alu -1 312 1 379 255 21 0 chr13 16398330 16398424 -85474745 + MIR SINE MIR 95 190 -72 220 146 24 0 chr13 16398838 16398879 -85474290 + (TTA)n Simple_repeat Simple_repeat 2 43 0 319 380 7 7 chr13 16399001 16399138 -85474031 + MER5B DNA MER1_type 1 137 -41 420 220 198 34 chr13 16399500 16399677 -85473492 + MIR SINE MIR 13 218 -44 246 298 81 24 chr13 16399719 16399843 -85473326 + MIR SINE MIR 2 132 -130 186 237 0 0 chr13 16399900 16399938 -85473231 - L2 LINE L2 -8 3264 3227 230 305 55 55 chr13 16400105 16400233 -85472936 + L2 LINE L2 2923 3050 -222 2221 118 3 7 chr13 16401313 16401618 -85471551 + AluSx SINE Alu 2 305 -7 342 299 35 40 chr13 16402663 16402837 -85470332 - MIR3 SINE MIR 0 208 36 192 333 74 43 chr13 16403019 16403277 -85469892 + L2 LINE L2 2820 3085 -187 2292 81 3 0 chr13 16403511 16403828 -85469341 - AluSx SINE Alu 0 318 1 1044 259 68 67 chr13 16403887 16404091 -85469078 - HAL1 LINE L1 -143 2364 2162 1749 115 76 49 chr13 16404091 16404379 -85468790 - AluSg SINE Alu -14 296 1 1044 259 68 67 chr13 16404379 16404480 -85468689 - HAL1 LINE L1 -345 2162 2063 1079 214 110 31 chr13 16404480 16404797 -85468372 - MER2 DNA MER2_type -1 343 2 1044 259 68 67 chr13 16404797 16405061 -85468108 - HAL1 LINE L1 -444 2063 1793 1208 250 125 35 chr13 16405578 16406153 -85467016 + L1M4 LINE L1 4627 5253 -893 4978 163 50 30 chr13 16406305 16406614 -85466555 - L1MA4 LINE L1 -165 6135 5834 2369 76 17 0 chr13 16406614 16406916 -85466253 - AluY SINE Alu 0 311 5 4978 163 50 30 chr13 16406916 16407399 -85465770 - L1MA4 LINE L1 -466 5834 5362 2114 105 6 53 chr13 16407399 16407722 -85465447 - AluSx SINE Alu -4 308 1 4978 163 50 30 chr13 16407722 16408636 -85464533 - L1MA4 LINE L1 -938 5362 4393 22 0 0 0 chr13 16409100 16409122 -85464047 + AT_rich Low_complexity Low_complexity 1 22 0 299 341 67 0 chr13 16409164 16409299 -85463870 - L2 LINE L2 -213 3059 2916 1595 208 38 35 chr13 16411604 16411792 -85461377 - MLT1A2 LTR MaLR -17 357 166 2178 102 0 10 chr13 16411792 16412087 -85461082 - AluSg SINE Alu -18 292 1 1595 208 38 35 chr13 16412087 16412244 -85460925 - MLT1A2 LTR MaLR -208 166 11 194 115 0 66 chr13 16413051 16413112 -85460057 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 26 0 0 0 chr13 16413237 16413263 -85459906 + AT_rich Low_complexity Low_complexity 1 26 0 676 221 51 67 chr13 16413263 16413458 -85459711 - MIR SINE MIR -5 257 66 220 330 62 10 chr13 16413998 16414095 -85459074 - L2 LINE L2 -7 3265 3164 220 316 0 0 chr13 16414423 16414480 -85458689 + GA-rich Low_complexity Low_complexity 3 59 0 1080 158 77 0 chr13 16414703 16414886 -85458283 + AluJb SINE Alu 105 301 -11 1508 185 11 21 chr13 16415079 16415365 -85457804 + AluJo SINE Alu 9 291 -21 229 190 17 35 chr13 16415545 16415603 -85457566 - MER45B DNA AcHobo -232 808 752 282 344 48 43 chr13 16415824 16416010 -85457159 - MIR SINE MIR -56 206 20 215 325 65 26 chr13 16416440 16416517 -85456652 + MIR SINE MIR 19 98 -110 418 248 12 56 chr13 16416589 16416756 -85456413 + MER5A DNA MER1_type 7 157 -21 246 325 58 52 chr13 16416893 16417047 -85456122 + MIR SINE MIR 103 257 -5 665 255 62 21 chr13 16417077 16417269 -85455900 - MIR SINE MIR 0 262 63 22 80 0 0 chr13 16417643 16417693 -85455476 + AT_rich Low_complexity Low_complexity 1 50 0 2322 88 0 0 chr13 16417775 16418069 -85455100 + AluSc SINE Alu 1 294 -15 27 29 0 0 chr13 16418077 16418111 -85455058 + AT_rich Low_complexity Low_complexity 1 34 0 275 265 120 72 chr13 16418136 16418510 -85454659 - L1ME4a LINE L1 -113 6008 5617 381 297 116 47 chr13 16418608 16418928 -85454241 - L1ME4a LINE L1 -1326 4820 4479 443 189 106 23 chr13 16419035 16419167 -85454002 - L1MB7 LINE L1 -9 6175 6033 1823 211 43 85 chr13 16419172 16419763 -85453406 - L1ME4a LINE L1 -3314 2832 2276 2054 139 3 0 chr13 16419763 16420066 -85453103 + AluSx SINE Alu 9 312 0 1823 211 43 85 chr13 16420066 16420200 -85452969 - L1ME4a LINE L1 -3870 2276 2138 12246 139 23 4 chr13 16420204 16422126 -85451043 + Tigger4(Zombi) DNA MER2_type 5 1962 -769 602 233 30 8 chr13 16422158 16422291 -85450878 - MER5A DNA MER1_type -42 147 12 21 57 0 0 chr13 16422807 16422842 -85450327 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 16423007 16423028 -85450141 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 16423671 16423700 -85449469 + AT_rich Low_complexity Low_complexity 1 29 0 995 101 14 0 chr13 16424859 16424997 -85448172 + AluSg/x SINE Alu 154 293 -17 2481 132 27 41 chr13 16425679 16426117 -85447052 - MSTB1 LTR MaLR 0 432 1 2318 80 6 13 chr13 16426253 16426388 -85446781 + AluY SINE Alu 1 135 -176 2046 108 3 17 chr13 16426388 16426707 -85446462 + AluSp SINE Alu 1 313 0 2318 80 6 13 chr13 16426707 16426882 -85446287 + AluY SINE Alu 135 309 -2 246 279 16 0 chr13 16427818 16427879 -85445290 + MER5A DNA MER1_type 8 69 -120 370 343 181 16 chr13 16430731 16431096 -85442073 + L2 LINE L2 1048 1472 -1842 1254 175 73 14 chr13 16431121 16431571 -85441598 + Tigger7 DNA MER2_type 8 521 -212 459 180 22 0 chr13 16431570 16431659 -85441510 + Tigger7 DNA MER2_type 2400 2490 -1 * 743 172 59 18 chr13 16431744 16431913 -85441256 - L1M4 LINE L1 -805 5341 5166 1887 214 122 10 chr13 16432021 16432619 -85440550 - L1M4 LINE L1 -1133 5013 4349 2392 77 0 0 chr13 16432689 16432986 -85440183 + AluY SINE Alu 1 297 -14 245 312 201 0 chr13 16434208 16434362 -85438807 + MIR SINE MIR 57 241 -21 185 362 0 17 chr13 16434493 16434551 -85438618 - L2 LINE L2 -5 3267 3211 2170 114 3 10 chr13 16436526 16436824 -85436345 - AluSq SINE Alu -15 298 3 243 385 27 27 chr13 16439261 16439560 -85433609 + HAL1b LINE L1 216 514 -834 2247 229 86 57 chr13 16439923 16440453 -85432716 + L1MC5 LINE L1 6476 7045 -916 2278 133 37 3 chr13 16440453 16440805 -85432364 - THE1B LTR MaLR 0 364 1 2247 229 86 57 chr13 16440805 16441255 -85431914 + L1MC5 LINE L1 7045 7480 -481 309 265 64 54 chr13 16441395 16441602 -85431567 + L1ME3A LINE L1 5962 6162 -8 251 353 133 47 chr13 16441849 16442271 -85430898 + L2 LINE L2 2815 3272 0 351 234 32 11 chr13 16442750 16442844 -85430325 - MIR SINE MIR -89 173 78 1549 190 10 17 chr13 16443185 16443480 -85429689 + AluJo SINE Alu 1 293 -19 232 109 0 0 chr13 16443492 16443538 -85429631 - LTR66 LTR ERVL -171 439 394 188 159 0 23 chr13 16443544 16443588 -85429581 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 38 22 0 0 chr13 16443985 16444030 -85429139 + AT_rich Low_complexity Low_complexity 1 45 0 709 312 24 12 chr13 16444951 16445198 -85427971 - MIR SINE MIR 0 262 13 268 276 0 0 chr13 16445297 16445355 -85427814 - L2 LINE L2 -5 3308 3251 314 383 8 0 chr13 16445459 16445579 -85427590 + L1M4 LINE L1 3715 3835 -2311 32 0 0 0 chr13 16446243 16446275 -85426894 + AT_rich Low_complexity Low_complexity 1 32 0 1882 160 0 3 chr13 16446438 16446726 -85426443 + AluJo SINE Alu 4 290 -22 1580 139 14 11 chr13 16446764 16447044 -85426125 + L1MA8 LINE L1 6011 6291 0 825 336 33 4 chr13 16448467 16448738 -85424431 - LTR33 LTR ERVL -242 279 1 291 316 77 0 chr13 16448771 16448888 -85424281 - MIR SINE MIR -17 245 120 295 315 0 0 chr13 16448914 16449003 -85424166 - MIR SINE MIR -99 163 75 2353 154 21 34 chr13 16449078 16449552 -85423617 + L1MC1 LINE L1 5861 6328 -5 769 135 24 0 chr13 16452134 16452260 -85420909 - MER31A LTR ERV1 -70 415 287 853 95 0 0 chr13 16452267 16452372 -85420797 + AluSq/x SINE Alu 1 105 -208 952 105 13 0 chr13 16452399 16452551 -85420618 + (GAAA)n Simple_repeat Simple_repeat 2 155 0 1178 124 173 24 chr13 16452551 16452800 -85420369 - MER31A LTR ERV1 -199 286 1 261 0 0 0 chr13 16453718 16453747 -85419422 + (TTG)n Simple_repeat Simple_repeat 2 30 0 725 133 19 13 chr13 16454620 16454778 -85418391 - MER33 DNA MER1_type -27 336 178 972 176 0 33 chr13 16454780 16454962 -85418207 - FRAM SINE Alu 0 176 1 562 165 0 0 chr13 16454989 16455080 -85418089 - MER33 DNA MER1_type -205 119 29 24 77 0 0 chr13 16455480 16455532 -85417637 + AT_rich Low_complexity Low_complexity 1 52 0 215 100 75 12 chr13 16455540 16455620 -85417549 + (TA)n Simple_repeat Simple_repeat 2 86 0 222 191 0 0 chr13 16455655 16455702 -85417467 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 312 297 62 23 chr13 16456555 16456683 -85416486 - MIR SINE MIR -69 193 61 844 171 21 0 chr13 16458606 16458746 -85414423 - MER58B DNA MER1_type -5 336 194 1235 150 5 0 chr13 16458749 16458942 -85414227 - MLT1C LTR MaLR -2 465 272 2158 129 0 3 chr13 16458988 16459299 -85413870 + AluSq SINE Alu 1 310 -3 2060 131 0 10 chr13 16460433 16460730 -85412439 - AluSx SINE Alu -18 294 1 878 291 89 54 chr13 16460884 16461313 -85411856 - MLT1K LTR MaLR -60 528 85 2091 145 0 49 chr13 16462646 16463011 -85410158 + MER7A DNA MER2_type 2 346 0 287 264 107 16 chr13 16463337 16463458 -85409711 - MLT1K LTR MaLR -162 426 295 235 314 93 42 chr13 16463514 16463632 -85409537 - MLT1K LTR MaLR -399 189 66 2432 154 14 30 chr13 16463734 16464175 -85408994 + Tigger2a DNA MER2_type 1 434 0 5745 184 55 46 chr13 16464213 16464643 -85408526 - Charlie1a DNA MER1_type -1313 1448 1023 1670 167 47 0 chr13 16464643 16464918 -85408251 - AluJb SINE Alu -14 298 11 5745 184 55 46 chr13 16464918 16465918 -85407251 - Charlie1a DNA MER1_type -1738 1023 6 284 319 141 5 chr13 16466434 16466619 -85406550 + MIR SINE MIR 47 256 -6 290 203 0 0 chr13 16466915 16466974 -85406195 + AluSq SINE Alu 1 59 -249 7067 57 0 5 chr13 16466992 16467964 -85405205 - L1PA6 LINE L1 -3 6151 5182 18966 55 5 2 chr13 16467964 16470420 -85402749 + L1PA6 LINE L1 2740 5200 -946 1563 158 31 4 chr13 16470420 16470679 -85402490 + AluSq SINE Alu 41 306 -7 799 174 31 31 chr13 16471542 16471703 -85401466 + MLT1A2 LTR MaLR 1 161 -213 1651 164 61 3 chr13 16471710 16472003 -85401166 + AluJo SINE Alu 1 310 -2 183 80 0 0 chr13 16472005 16472030 -85401139 + (GGGAGA)n Simple_repeat Simple_repeat 4 28 0 1262 77 0 6 chr13 16472030 16472211 -85400958 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1067 118 82 9 chr13 16472357 16472577 -85400592 - AluSx SINE Alu -45 267 32 189 107 0 0 chr13 16475053 16475081 -85398088 + (TAA)n Simple_repeat Simple_repeat 1 28 0 113 81 0 0 chr13 16475124 16475384 -85397785 + AT_rich Low_complexity Low_complexity 1 260 0 314 184 34 45 chr13 16475384 16475563 -85397606 + (TAA)n Simple_repeat Simple_repeat 3 179 0 * 368 155 48 48 chr13 16475506 16475674 -85397495 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 24 0 0 0 chr13 16475682 16475706 -85397463 + AT_rich Low_complexity Low_complexity 1 24 0 240 143 18 36 chr13 16476142 16476198 -85396971 + L1MB3 LINE L1 6109 6163 -20 503 295 61 64 chr13 16477009 16477304 -85395865 - L2 LINE L2 0 3313 3020 660 132 81 0 chr13 16477770 16477906 -85395263 - L1MC2 LINE L1 0 6344 6198 506 161 54 9 chr13 16477975 16478087 -85395082 - L1MC2 LINE L1 -145 6199 6083 230 247 241 25 chr13 16478490 16478563 -85394606 + MIR SINE MIR 71 127 -135 4175 91 4 0 chr13 16478563 16479115 -85394054 - MER41A LTR ERV1 0 554 1 230 247 241 25 chr13 16479115 16479199 -85393970 + MIR SINE MIR 127 262 0 2719 58 137 2 chr13 16479207 16479602 -85393567 + LTR7 LTR ERV1 1 448 -2 269 140 20 20 chr13 16480182 16480232 -85392937 - L2 LINE L2 0 3313 3264 4071 157 62 31 chr13 16480414 16481215 -85391954 - LTR1B LTR ERV1 0 826 1 1348 236 133 19 chr13 16481480 16482366 -85390803 + L1M4 LINE L1 4637 5621 -553 1380 128 0 5 chr13 16482368 16482571 -85390598 + AluSx SINE Alu 2 203 -109 233 67 0 0 chr13 16482620 16482650 -85390519 - MER53 DNA DNA -131 58 29 344 327 56 23 chr13 16482745 16482959 -85390210 + L2 LINE L2 549 769 -2545 676 271 24 19 chr13 16482969 16483176 -85389993 - L2 LINE L2 -208 3105 2898 209 328 17 0 chr13 16483791 16483849 -85389320 + L2 LINE L2 3201 3259 -13 230 54 0 27 chr13 16483849 16483886 -85389283 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 703 277 113 18 chr13 16484405 16484805 -85388364 - L2 LINE L2 -170 3143 2701 2543 52 0 3 chr13 16484925 16485233 -85387936 - AluSq SINE Alu -6 307 1 821 273 97 76 chr13 16486256 16486732 -85386437 + LTR16C LTR ERVL 4 489 -2 210 255 38 104 chr13 16486741 16486847 -85386322 + MER5A DNA MER1_type 84 182 -7 189 0 0 0 chr13 16486944 16486965 -85386204 + (TA)n Simple_repeat Simple_repeat 2 22 0 225 329 53 0 chr13 16487531 16487607 -85385562 - MIR SINE MIR -93 115 36 277 312 109 28 chr13 16488295 16488767 -85384402 + L1MC/D LINE L1 4501 5012 -1134 228 281 175 72 chr13 16488972 16489544 -85383625 + L1MC/D LINE L1 5273 5903 -1905 22 0 0 0 chr13 16489551 16489573 -85383596 + AT_rich Low_complexity Low_complexity 1 22 0 363 229 57 41 chr13 16490766 16490888 -85382281 - MIR SINE MIR -33 229 106 589 249 30 28 chr13 16492287 16492507 -85380662 - L1MC/D LINE L1 -470 5651 5437 552 327 62 2 chr13 16492718 16493167 -85380002 - L1MC/D LINE L1 -1842 4304 3829 * 904 226 0 11 chr13 16493158 16493339 -85379830 + AluJo SINE Alu 124 302 -10 24 32 0 0 chr13 16493550 16493581 -85379588 + AT_rich Low_complexity Low_complexity 1 31 0 1009 165 6 0 chr13 16494045 16494203 -85378966 + FRAM SINE Alu 13 171 -5 428 207 0 0 chr13 16494340 16494422 -85378747 - AluJ/FLAM SINE Alu -225 87 6 1561 151 34 45 chr13 16494575 16494867 -85378302 - AluJo SINE Alu -23 289 1 638 150 35 9 chr13 16495567 16495680 -85377489 - U5 snRNA snRNA 0 116 1 1781 139 90 13 chr13 16496919 16497229 -85375940 - MER1B DNA MER1_type -3 334 1 22 0 0 0 chr13 16497626 16497648 -85375521 + AT_rich Low_complexity Low_complexity 1 22 0 188 277 135 57 chr13 16497765 16497930 -85375239 + MIR SINE MIR 19 188 -62 237 331 86 63 chr13 16498484 16498659 -85374510 - MIR SINE MIR -71 191 13 216 298 164 10 chr13 16498939 16499043 -85374126 + MIR SINE MIR 21 140 -122 236 244 126 76 chr13 16499129 16499248 -85373921 + MIR SINE MIR 20 144 -118 432 55 0 0 chr13 16499464 16499519 -85373650 + (TA)n Simple_repeat Simple_repeat 1 55 0 271 286 158 5 chr13 16500514 16500717 -85372452 - L2 LINE L2 -3 3310 3077 309 299 1 27 chr13 16500882 16501050 -85372119 - L1MC/D LINE L1 -305 5816 5673 1636 206 126 22 chr13 16502278 16502859 -85370310 - L1ME2 LINE L1 -12 6963 6323 748 216 58 32 chr13 16502864 16503206 -85369963 - L1ME2 LINE L1 -2969 3988 3638 554 187 53 120 chr13 16503244 16503527 -85369642 - L1ME2 LINE L1 -3587 3370 3107 577 259 142 12 chr13 16503534 16503858 -85369311 - L1ME2 LINE L1 -4549 2408 1942 616 249 61 30 chr13 16503871 16504168 -85369001 - L1ME2 LINE L1 -5348 1511 1206 447 238 54 12 chr13 16504884 16505052 -85368117 - L1MEc LINE L1 -4614 1782 1608 536 296 170 28 chr13 16505097 16505496 -85367673 - L1MEc LINE L1 -4659 1556 1101 440 214 139 9 chr13 16505503 16505718 -85367451 - L1MEc LINE L1 -5352 1044 802 1394 166 69 12 chr13 16505826 16506146 -85367023 + Tigger2 DNA MER2_type 1 338 -2380 1730 145 0 42 chr13 16506166 16506477 -85366692 + MER1B DNA MER1_type 40 337 -2 707 137 65 0 chr13 16506477 16506598 -85366571 + Tigger2 DNA MER2_type 344 472 -2246 235 135 0 0 chr13 16506608 16506645 -85366524 + Tigger2 DNA MER2_type 708 744 -1974 969 173 142 0 chr13 16506681 16506907 -85366262 + Tigger2 DNA MER2_type 2461 2718 0 397 358 30 20 chr13 16506918 16507119 -85366050 - L1MEc LINE L1 -5696 700 498 814 225 60 30 chr13 16507129 16507188 -85365981 + Tigger7 DNA MER2_type 24 80 -428 1645 181 13 29 chr13 16507188 16507497 -85365672 + AluJo SINE Alu 1 304 -8 814 225 60 30 chr13 16507497 16507652 -85365517 + Tigger7 DNA MER2_type 80 243 -265 228 336 27 7 chr13 16507679 16507825 -85365344 - L1MEc LINE L1 -6007 389 241 379 267 78 0 chr13 16508912 16509028 -85364141 - MIR SINE MIR -17 245 121 599 309 49 14 chr13 16509447 16509732 -85363437 - L1ME LINE L1 -5666 404 110 11759 153 38 5 chr13 16509744 16512223 -85360946 - L1M1 LINE L1 -4027 3538 263 2120 118 7 7 chr13 16512223 16512527 -85360642 - AluSx SINE Alu -8 304 1 11759 153 38 5 chr13 16512527 16512788 -85360381 - L1M1 LINE L1 -7302 263 12 252 222 0 16 chr13 16512785 16512848 -85360321 - L1ME LINE L1 -5964 106 45 * 811 297 139 43 chr13 16512903 16513556 -85359613 + L2 LINE L2 1692 2407 -907 388 258 52 45 chr13 16514226 16514381 -85358788 - L2 LINE L2 0 3313 3158 255 125 0 0 chr13 16514381 16514421 -85358748 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 471 216 141 124 chr13 16514512 16514659 -85358510 - L2 LINE L2 -350 2964 2821 775 170 149 48 chr13 16514659 16514847 -85358322 + MER63A DNA MER1_type 4 210 0 471 216 141 124 chr13 16514847 16514924 -85358245 - L2 LINE L2 -493 2821 2747 1930 148 23 3 chr13 16514924 16515228 -85357941 + AluSx SINE Alu 1 310 -2 471 216 141 124 chr13 16515228 16515293 -85357876 - L2 LINE L2 -567 2747 2669 1230 291 149 29 chr13 16515566 16516600 -85356569 + Charlie8 DNA MER1_type 339 1612 -805 2048 167 44 39 chr13 16516600 16517031 -85356138 - Tigger2a DNA MER2_type -1 433 1 1230 291 149 29 chr13 16517031 16517463 -85355706 + Charlie8 DNA MER1_type 1612 1991 -426 403 208 21 10 chr13 16520208 16520304 -85352865 + MER95 LTR ERV 22 118 -313 336 115 103 13 chr13 16520404 16520482 -85352687 + MER95 LTR ERV 343 427 -4 3265 137 24 0 chr13 16520554 16521387 -85351782 - L1P4 LINE L1 -368 5795 4949 2154 119 3 0 chr13 16521387 16521715 -85351454 + L1PA13 LINE L1 5830 6158 -5 246 316 53 13 chr13 16522936 16523012 -85350157 - L2 LINE L2 -4 3309 3231 1877 169 20 31 chr13 16524764 16525154 -85348015 + MLT1B LTR MaLR 1 386 -4 265 381 35 10 chr13 16525303 16525505 -85347664 - L3 LINE CR1 -258 1319 1113 871 162 40 0 chr13 16525847 16525995 -85347174 - FRAM SINE Alu -23 153 1 2182 105 0 53 chr13 16526277 16526600 -85346569 + AluSq SINE Alu 1 306 -7 203 250 33 11 chr13 16527544 16527636 -85345533 + (TA)n Simple_repeat Simple_repeat 2 95 0 2172 181 19 14 chr13 16528850 16529270 -85343899 - MSTB LTR MaLR -4 422 1 199 259 35 0 chr13 16529620 16529678 -85343491 - L2 LINE L2 -540 2774 2715 313 0 0 0 chr13 16529723 16529760 -85343409 - MSTB LTR MaLR -372 54 18 200 216 20 0 chr13 16530505 16530556 -85342613 + (CAAT)n Simple_repeat Simple_repeat 3 54 0 2367 82 3 16 chr13 16530703 16531008 -85342161 + AluSp SINE Alu 1 301 -12 525 319 113 34 chr13 16531119 16531794 -85341375 + HERVL LTR ERVL 1362 2089 -3675 215 265 0 0 chr13 16531850 16531899 -85341270 + (TA)n Simple_repeat Simple_repeat 2 50 0 341 281 21 10 chr13 16531906 16532002 -85341167 + HERVL LTR ERVL 2171 2267 -3497 286 315 159 26 chr13 16532015 16532355 -85340814 + HERVL LTR ERVL 4506 4890 -764 302 338 22 35 chr13 16532506 16532737 -85340432 + HERVL LTR ERVL 5072 5299 -186 2584 129 194 21 chr13 16533241 16533766 -85339403 + MER51A LTR ERV1 1 616 -18 342 269 0 55 chr13 16534090 16534235 -85338934 + LTR67 LTR ERVL 414 550 -7 197 83 28 0 chr13 16535661 16535697 -85337472 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 513 299 57 6 chr13 16535922 16536079 -85337090 - MIR3 SINE MIR -14 194 30 2105 203 60 6 chr13 16536115 16536594 -85336575 - MLT1D LTR MaLR 0 505 1 22 0 0 0 chr13 16537359 16537381 -85335788 + AT_rich Low_complexity Low_complexity 1 22 0 2271 90 3 0 chr13 16537382 16537692 -85335477 + AluSp SINE Alu 1 311 -2 199 111 0 0 chr13 16537739 16537766 -85335403 + L2 LINE L2 3232 3258 -14 245 312 174 7 chr13 16538162 16538300 -85334869 - MIR SINE MIR -6 256 96 316 304 175 21 chr13 16538539 16538733 -85334436 + MIR SINE MIR 19 242 -20 2148 128 0 3 chr13 16539236 16539549 -85333620 - AluSx SINE Alu 0 312 1 714 270 75 107 chr13 16540016 16540390 -85332779 - L2 LINE L2 -1 3271 2910 210 341 62 31 chr13 16540555 16540684 -85332485 + L2 LINE L2 2954 3086 -186 332 276 265 0 chr13 16540744 16540929 -85332240 + MIR SINE MIR 26 259 -3 234 431 36 6 chr13 16540960 16541127 -85332042 + L2 LINE L2 3099 3270 -2 269 366 66 22 chr13 16541630 16541813 -85331356 + MIR3 SINE MIR 9 199 -9 633 266 131 18 chr13 16541975 16542204 -85330965 - MIR SINE MIR -6 256 2 208 372 0 0 chr13 16542212 16542298 -85330871 - MIR SINE MIR -15 247 162 213 252 18 18 chr13 16542637 16542748 -85330421 + (TTATA)n Simple_repeat Simple_repeat 5 115 0 227 181 15 98 chr13 16542801 16542934 -85330235 + (TATAA)n Simple_repeat Simple_repeat 3 124 0 315 267 111 39 chr13 16542960 16543140 -85330029 + MIR SINE MIR 57 249 -13 26 0 0 0 chr13 16543256 16543282 -85329887 + AT_rich Low_complexity Low_complexity 1 26 0 290 222 152 66 chr13 16543321 16543625 -85329544 - L2 LINE L2 -677 2637 2317 188 61 61 0 chr13 16544535 16544568 -85328601 + A-rich Low_complexity Low_complexity 2 36 0 1822 172 53 3 chr13 16544789 16545108 -85328061 - MER7A DNA MER2_type -13 333 1 781 216 33 19 chr13 16545108 16545357 -85327812 - L1MA9 LINE L1 -33 6266 5997 2117 177 60 24 chr13 16545364 16545815 -85327354 - MLT1C LTR MaLR 0 467 1 373 289 83 62 chr13 16548821 16549157 -85324012 + L1ME LINE L1 4477 4819 -1327 249 284 110 55 chr13 16549159 16549268 -85323901 + L2 LINE L2 3198 3312 -1 490 196 209 13 chr13 16549857 16550015 -85323154 + MER5A DNA MER1_type 1 189 0 2095 168 43 33 chr13 16550632 16551178 -85321991 + MLT2A2 LTR ERVL 1 554 0 318 329 43 0 chr13 16551341 16551502 -85321667 + L1ME LINE L1 5569 5736 -385 696 266 84 21 chr13 16552974 16553211 -85319958 + MIR SINE MIR 11 262 0 1431 220 36 51 chr13 16553439 16553907 -85319262 + MER65B LTR ERV1 1 461 -70 23 78 0 0 chr13 16554083 16554134 -85319035 + AT_rich Low_complexity Low_complexity 1 51 0 241 378 20 26 chr13 16554556 16554707 -85318462 + GA-rich Low_complexity Low_complexity 1 150 0 2279 30 0 0 chr13 16554712 16554981 -85318188 - L1PA3 LINE L1 -142 6013 5745 320 130 78 26 chr13 16554981 16555058 -85318111 + MER65B LTR ERV1 440 520 -11 183 80 0 0 chr13 16555226 16555251 -85317918 + (TG)n Simple_repeat Simple_repeat 2 26 0 227 125 50 0 chr13 16555265 16555305 -85317864 + L1MA9 LINE L1 6196 6237 -75 219 116 0 47 chr13 16555306 16555349 -85317820 + (TA)n Simple_repeat Simple_repeat 1 41 0 526 134 42 33 chr13 16555355 16555603 -85317566 + (TATG)n Simple_repeat Simple_repeat 1 250 0 535 122 39 39 chr13 16555609 16555789 -85317380 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 264 174 0 76 chr13 16555789 16555881 -85317288 + (TA)n Simple_repeat Simple_repeat 1 85 0 358 172 115 0 chr13 16555882 16555969 -85317200 - L1MA9 LINE L1 -40 6272 6176 1114 158 48 31 chr13 16555969 16556197 -85316972 - L1MA9 LINE L1 -101 6211 5980 314 203 20 27 chr13 16556197 16556345 -85316824 + (TA)n Simple_repeat Simple_repeat 2 148 0 995 252 9 0 chr13 16556378 16556588 -85316581 - MER58A DNA MER1_type -9 215 4 655 267 85 21 chr13 16557976 16558221 -85314948 - MIR SINE MIR -13 249 3 661 193 62 0 chr13 16558602 16558747 -85314422 + L1MB7 LINE L1 6031 6184 0 436 322 87 51 chr13 16559494 16559829 -85313340 + L2 LINE L2 2925 3271 -1 371 324 35 17 chr13 16560803 16560976 -85312193 - MIR SINE MIR -51 211 36 438 285 62 8 chr13 16561138 16561268 -85311901 + MIR3 SINE MIR 3 139 -69 358 234 11 43 chr13 16562478 16562662 -85310507 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1937 143 3 3 chr13 16563218 16563504 -85309665 + AluSx SINE Alu 1 286 -26 22 56 0 0 chr13 16563504 16563540 -85309629 + AT_rich Low_complexity Low_complexity 1 36 0 457 282 49 45 chr13 16564626 16564871 -85308298 - L1ME LINE L1 -368 5753 5508 653 274 30 79 chr13 16565559 16565825 -85307344 - MIR SINE MIR 0 262 10 251 324 140 59 chr13 16566190 16567053 -85306116 + L2 LINE L2 2296 3221 -51 556 79 13 0 chr13 16567241 16567317 -85305852 + MADE1 DNA Mariner 1 77 -3 2697 151 15 30 chr13 16567399 16567862 -85305307 + MSTB2 LTR MaLR 1 456 -1 350 204 10 61 chr13 16568065 16568163 -85305006 + MIR3 SINE MIR 64 156 -52 348 313 36 62 chr13 16568347 16568366 -85304803 + L2 LINE L2 2892 2910 -362 2370 110 126 3 chr13 16568366 16568747 -85304422 + MSTA LTR MaLR 1 428 0 348 313 36 62 chr13 16568747 16568922 -85304247 + L2 LINE L2 2910 3081 -191 465 281 252 5 chr13 16568994 16569204 -85303965 - MIR SINE MIR 0 262 1 192 353 47 12 chr13 16569222 16569307 -85303862 + L2 LINE L2 3184 3271 -1 236 311 11 56 chr13 16569514 16569604 -85303565 + L2 LINE L2 3184 3269 -3 435 317 0 22 chr13 16569834 16570017 -85303152 + GA-rich Low_complexity Low_complexity 1 179 0 203 258 30 30 chr13 16570163 16570229 -85302940 + MIR3 SINE MIR 137 202 -6 1282 236 106 64 chr13 16570333 16570787 -85302382 + MLT2B1 LTR ERVL 1 479 -41 378 0 0 0 chr13 16570787 16570829 -85302340 + (TG)n Simple_repeat Simple_repeat 2 43 0 1282 236 106 64 chr13 16570829 16570873 -85302296 + MLT2B1 LTR ERVL 479 520 0 1255 233 34 15 chr13 16572321 16572583 -85300586 + AluJb SINE Alu 9 275 -37 180 256 0 0 chr13 16573835 16573878 -85299291 - MIR SINE MIR -3 259 217 341 259 79 36 chr13 16574023 16574162 -85299007 - HsTC2 DNA Tc2 -107 1791 1647 * 405 174 209 0 chr13 16574161 16574247 -85298922 - HsTC2 DNA Tc2 -1764 134 31 388 179 214 0 chr13 16574334 16574418 -85298751 - HsTC2 DNA Tc2 -1766 132 31 300 356 83 21 chr13 16574762 16575099 -85298070 - L2 LINE L2 -404 2910 2553 410 258 43 0 chr13 16575312 16575405 -85297764 - L2 LINE L2 -2 3270 3174 1618 190 102 8 chr13 16575963 16576357 -85296812 - MER63 DNA MER1_type -1 1059 629 634 355 44 19 chr13 16576363 16576507 -85296662 - L2 LINE L2 -436 2878 2739 1492 100 45 0 chr13 16576507 16576727 -85296442 - MER30 DNA MER1_type 0 230 1 634 355 44 19 chr13 16576727 16576943 -85296226 - L2 LINE L2 -575 2739 2509 15123 196 18 29 chr13 16577714 16581537 -85291632 - L1MA4 LINE L1 -6 7713 3850 471 87 0 0 chr13 16581537 16581606 -85291563 - L1MA3 LINE L1 -1 6304 6236 15123 196 18 29 chr13 16581606 16582797 -85290372 - L1MA4 LINE L1 -3869 3850 2758 1980 150 40 0 chr13 16582797 16583097 -85290072 - AluSx SINE Alu 0 312 1 15123 196 18 29 chr13 16583097 16583273 -85289896 - L1MA4 LINE L1 -4961 2758 2582 186 43 0 0 chr13 16583349 16583372 -85289797 + (TA)n Simple_repeat Simple_repeat 1 23 0 5474 148 26 18 chr13 16583372 16584817 -85288352 - L1PB3 LINE L1 -1 6153 4706 1561 307 65 18 chr13 16584825 16585531 -85287638 - L1MA4 LINE L1 -6122 1444 706 5274 235 85 12 chr13 16585563 16586816 -85286353 - L1M1 LINE L1 -4065 1263 9 205 362 26 26 chr13 16587482 16587634 -85285535 - L3b LINE CR1 -328 1255 1104 274 393 124 5 chr13 16587881 16588082 -85285087 - L3 LINE CR1 -1132 445 221 556 256 25 103 chr13 16588642 16588884 -85284285 + MIR SINE MIR 26 248 -14 231 360 0 11 chr13 16589465 16589554 -85283615 + L2 LINE L2 3196 3283 -30 540 184 0 7 chr13 16589554 16589662 -85283507 - L1MA6 LINE L1 -295 5871 5770 2248 162 14 7 chr13 16589662 16590076 -85283093 + L1MA6 LINE L1 5879 6295 -5 21 0 0 0 chr13 16590083 16590104 -85283065 + AT_rich Low_complexity Low_complexity 1 21 0 2361 84 3 0 chr13 16590456 16590752 -85282417 + AluY SINE Alu 1 297 -14 21 71 0 0 chr13 16591047 16591089 -85282080 + AT_rich Low_complexity Low_complexity 1 42 0 249 276 0 0 chr13 16591128 16591186 -85281983 - L2 LINE L2 -223 3049 2992 212 254 141 42 chr13 16591203 16591274 -85281895 + MER91C DNA MER1_type 31 108 -32 7819 17 0 0 chr13 16591310 16592863 -85280306 + L1PA3 LINE L1 4593 6152 -3 2006 121 37 0 chr13 16592935 16593233 -85279936 - AluY SINE Alu 0 311 3 320 311 89 64 chr13 16593390 16593670 -85279499 - MLT1L LTR MaLR -161 454 168 896 186 6 0 chr13 16594072 16594228 -85278941 + L1PB4 LINE L1 5982 6138 -18 1328 110 24 5 chr13 16595636 16595845 -85277324 - L1PA13 LINE L1 -2 6161 5949 1060 210 134 7 chr13 16595848 16596047 -85277122 - L1MD2 LINE L1 -1 6358 6109 219 88 0 0 chr13 16596047 16596081 -85277088 + (TG)n Simple_repeat Simple_repeat 2 35 0 1060 210 134 7 chr13 16596081 16596171 -85276998 - L1MD2 LINE L1 -250 6109 6032 1306 243 73 18 chr13 16596429 16596865 -85276304 + L1MD2 LINE L1 5615 6074 -285 1374 202 31 39 chr13 16596866 16597222 -85275947 - MLT1A1 LTR MaLR -12 353 1 313 238 8 41 chr13 16597222 16597344 -85275825 + L1MD2 LINE L1 6068 6185 -174 231 269 0 39 chr13 16597539 16597617 -85275552 - MIR SINE MIR -180 82 8 293 258 113 24 chr13 16598060 16598184 -85274985 + L2 LINE L2 3138 3272 0 1972 131 34 0 chr13 16598435 16598726 -85274443 - AluSg SINE Alu -9 301 1 1002 196 0 5 chr13 16598848 16599052 -85274117 - MER3 DNA MER1_type -1 208 6 1239 206 51 71 chr13 16599315 16599708 -85273461 + MLT1D LTR MaLR 1 385 -120 284 260 34 2 chr13 16599828 16599957 -85273212 - L1M LINE L1 -749 5413 5281 274 253 0 0 chr13 16599980 16600063 -85273106 - L1M4 LINE L1 -933 5213 5131 1236 260 40 46 chr13 16600099 16600675 -85272494 + MER21B LTR ERV1 162 784 -79 770 304 93 27 chr13 16600688 16601385 -85271784 - L1MEc LINE L1 -2790 3636 2894 366 317 59 69 chr13 16601412 16601718 -85271451 - L1MEc LINE L1 -4237 2370 2068 1923 189 21 3 chr13 16601756 16602157 -85271012 + MER61C LTR ERV1 13 404 -30 598 308 59 17 chr13 16602192 16602669 -85270500 - L1MEc LINE L1 -4634 1973 1477 357 266 60 82 chr13 16602863 16603047 -85270122 - L1MEc LINE L1 -5433 993 814 25 0 0 0 chr13 16603117 16603142 -85270027 + AT_rich Low_complexity Low_complexity 1 25 0 940 139 30 0 chr13 16603142 16603308 -85269861 - L1MA3 LINE L1 0 6305 6135 423 238 98 21 chr13 16603315 16603508 -85269661 - Charlie7 DNA MER1_type -1945 667 460 308 289 62 0 chr13 16604044 16604141 -85269028 - MIR SINE MIR -43 219 117 863 251 37 8 chr13 16604142 16604287 -85268882 - MLT1E1 LTR MaLR 0 654 498 893 167 6 0 chr13 16604287 16604455 -85268714 + L1MA5 LINE L1 6132 6300 0 863 251 37 8 chr13 16604455 16604552 -85268617 - MLT1E1 LTR MaLR -156 498 405 316 177 33 73 chr13 16604584 16604744 -85268425 - MLT1E1 LTR MaLR -433 221 51 199 304 33 22 chr13 16606120 16606212 -85266957 - MIR SINE MIR -45 217 125 208 358 127 6 chr13 16606678 16606843 -85266326 + L2 LINE L2 2434 2618 -696 2709 210 81 15 chr13 16607181 16607926 -85265243 - Charlie1a DNA MER1_type -1306 1455 760 1965 135 55 22 chr13 16607926 16608289 -85264880 + THE1C LTR MaLR 1 375 0 9947 121 30 38 chr13 16608289 16609881 -85263288 + THE1C-int LTR MaLR 1 1580 0 1720 130 109 29 chr13 16609881 16610228 -85262941 + THE1C LTR MaLR 1 375 0 2709 210 81 15 chr13 16610228 16610443 -85262726 - Charlie1a DNA MER1_type -2000 761 368 1371 219 82 30 chr13 16610443 16610844 -85262325 + MLT2B1 LTR ERVL 2 423 -97 269 87 0 22 chr13 16610844 16610890 -85262279 + (TC)n Simple_repeat Simple_repeat 2 46 0 306 0 0 0 chr13 16610890 16610924 -85262245 + (CA)n Simple_repeat Simple_repeat 2 35 0 1484 212 45 17 chr13 16610962 16611321 -85261848 - Charlie1a DNA MER1_type -1082 373 5 397 257 59 0 chr13 16611436 16611572 -85261597 + MLT1K LTR MaLR 379 522 -66 200 35 35 0 chr13 16611572 16611601 -85261568 + (TC)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr13 16611857 16611881 -85261288 + (T)n Simple_repeat Simple_repeat 1 24 0 2172 101 3 3 chr13 16612051 16612349 -85260820 - AluY SINE Alu -13 298 1 542 315 64 5 chr13 16612584 16612803 -85260366 - MIR SINE MIR 0 262 31 221 277 12 48 chr13 16612856 16612939 -85260230 - L2 LINE L2 -4 3309 3230 402 311 115 43 chr13 16613496 16613801 -85259368 - L3 LINE CR1 -21 1556 1230 180 0 0 0 chr13 16614142 16614162 -85259007 + (A)n Simple_repeat Simple_repeat 1 20 0 1784 174 19 25 chr13 16615348 16615715 -85257454 - MLT1A1 LTR MaLR 0 365 1 219 233 62 123 chr13 16617475 16617621 -85255548 + MIR SINE MIR 56 192 -70 204 70 70 0 chr13 16617807 16617850 -85255319 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 713 313 37 67 chr13 16618689 16619124 -85254045 - L2 LINE L2 -2 3311 2890 307 319 72 30 chr13 16620037 16620203 -85252966 + L2 LINE L2 2695 2867 -447 2515 163 12 0 chr13 16620598 16621021 -85252148 - MSTA LTR MaLR 0 428 1 192 338 44 0 chr13 16621091 16621159 -85252010 + MIR SINE MIR 38 108 -100 204 348 70 81 chr13 16621701 16621793 -85251376 + L2 LINE L2 2807 2898 -374 860 149 20 51 chr13 16621793 16621988 -85251181 - MER53 DNA DNA 0 189 1 204 348 70 81 chr13 16621988 16622364 -85250805 + L2 LINE L2 2898 3270 -2 304 307 102 0 chr13 16623296 16623423 -85249746 + L1ME4a LINE L1 5573 5712 -409 280 273 13 0 chr13 16623437 16623514 -85249655 + L1ME4a LINE L1 5788 5865 -256 346 281 51 39 chr13 16623817 16623995 -85249174 + L1ME4a LINE L1 5942 6121 0 918 253 89 50 chr13 16625536 16625975 -85247194 + MLT1C LTR MaLR 6 461 -6 355 202 167 39 chr13 16625975 16626092 -85247077 + MIR SINE MIR 18 161 -93 1290 157 197 14 chr13 16626092 16626386 -85246783 + MER7A DNA MER2_type 1 346 0 355 202 167 39 chr13 16626386 16626423 -85246746 + MIR SINE MIR 161 192 -62 205 326 0 0 chr13 16627061 16627110 -85246059 + L2 LINE L2 3008 3056 -257 1986 138 3 22 chr13 16627692 16628010 -85245159 + AluSx SINE Alu 1 312 0 2420 96 0 0 chr13 16628301 16628603 -85244566 - AluSg SINE Alu -8 302 1 235 125 0 0 chr13 16628620 16628660 -85244509 - MER103 DNA DNA -119 47 8 2182 104 7 0 chr13 16628955 16629243 -85243926 - AluSx SINE Alu -22 290 1 289 331 50 50 chr13 16630453 16630592 -85242577 + MIR3 SINE MIR 4 142 -66 4175 96 12 5 chr13 16630734 16631330 -85241839 - L1PA11 LINE L1 0 6174 5575 951 297 88 23 chr13 16631359 16631800 -85241369 - LTR16C LTR ERVL 0 491 22 21 0 0 0 chr13 16631860 16631881 -85241288 + AT_rich Low_complexity Low_complexity 1 21 0 1004 202 0 5 chr13 16632278 16632466 -85240703 - MER58A DNA MER1_type 0 224 38 325 314 65 20 chr13 16632476 16632629 -85240540 - L1ME LINE L1 -353 5809 5650 1911 141 0 14 chr13 16632649 16632933 -85240236 + AluSx SINE Alu 1 280 -32 363 254 97 92 chr13 16633168 16633396 -85239773 - L1MEd LINE L1 -5871 248 20 231 329 57 0 chr13 16633547 16633617 -85239552 + L2 LINE L2 3150 3223 -49 193 276 103 60 chr13 16634060 16634176 -85238993 - L2 LINE L2 -262 3051 2931 335 58 58 0 chr13 16634411 16634463 -85238706 + CT-rich Low_complexity Low_complexity 4 58 0 1807 119 8 0 chr13 16634463 16634715 -85238454 - AluSx SINE Alu -3 309 56 4796 194 36 7 chr13 16635523 16635677 -85237492 + L1MC3 LINE L1 5311 5459 -2326 192 77 0 0 chr13 16635677 16635703 -85237466 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4796 194 36 7 chr13 16635703 16636630 -85236539 + L1MC3 LINE L1 5459 6424 -1361 3713 191 133 42 chr13 16636647 16637054 -85236115 + L1MC3 LINE L1 6614 6982 -803 2752 118 80 4 chr13 16637054 16637528 -85235641 + L1MA4 LINE L1 5785 6294 -6 3713 191 133 42 chr13 16637528 16638194 -85234975 + L1MC3 LINE L1 6982 7785 0 24 32 0 0 chr13 16638324 16638355 -85234814 + AT_rich Low_complexity Low_complexity 1 31 0 28 95 0 0 chr13 16638711 16638795 -85234374 + AT_rich Low_complexity Low_complexity 1 84 0 576 338 49 21 chr13 16639585 16639913 -85233256 + L2 LINE L2 2020 2356 -958 216 284 101 81 chr13 16640051 16640199 -85232970 + L2 LINE L2 2564 2714 -600 1085 120 0 21 chr13 16640342 16640533 -85232636 - L1MA5A LINE L1 -1 6296 6110 392 298 50 8 chr13 16640674 16640795 -85232374 + L2 LINE L2 3145 3270 -2 270 81 0 0 chr13 16641677 16641714 -85231455 + (TA)n Simple_repeat Simple_repeat 2 38 0 233 258 43 0 chr13 16641726 16641819 -85231350 + L1MC4 LINE L1 6622 6718 -1324 198 71 0 0 chr13 16641822 16641850 -85231319 + (TA)n Simple_repeat Simple_repeat 1 28 0 424 254 30 18 chr13 16641861 16642026 -85231143 - L1M4 LINE L1 -957 5189 5023 1339 80 6 6 chr13 16642029 16642204 -85230965 - AluSp SINE Alu -3 310 136 490 291 102 11 chr13 16642274 16642645 -85230524 - L1M4 LINE L1 -1212 4934 4530 321 324 65 46 chr13 16642684 16643012 -85230157 + L2 LINE L2 2635 3055 -258 431 338 47 5 chr13 16643012 16643441 -85229728 + L1 LINE L1 3964 4410 -1736 333 214 90 11 chr13 16643442 16643531 -85229638 + L1 LINE L1 4419 4514 -1632 753 257 58 35 chr13 16643571 16644107 -85229062 + L1M4 LINE L1 3159 3747 -2399 36 53 0 0 chr13 16644123 16644180 -85228989 + AT_rich Low_complexity Low_complexity 1 57 0 37 23 0 0 chr13 16644296 16644340 -85228829 + AT_rich Low_complexity Low_complexity 1 44 0 1780 243 67 80 chr13 16644360 16645490 -85227679 + L1M4 LINE L1 3797 4912 -1234 24487 42 42 2 chr13 16645494 16648740 -85224429 + L1P LINE L1 3 3378 -2768 238 363 56 31 chr13 16649630 16649790 -85223379 - MIR SINE MIR -78 184 21 234 296 93 0 chr13 16650101 16650209 -85222960 - MLT1H LTR MaLR -11 538 421 384 318 8 58 chr13 16650325 16650567 -85222602 - MLT1H LTR MaLR -289 260 31 379 258 10 10 chr13 16650721 16650818 -85222351 + MIR3 SINE MIR 112 208 0 198 118 0 0 chr13 16651238 16651272 -85221897 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1738 170 3 7 chr13 16651275 16651558 -85221611 - AluJo SINE Alu -30 282 1 1610 167 48 0 chr13 16652467 16652760 -85220409 + Tigger3(Golem) DNA MER2_type 2722 3028 -1 262 280 210 14 chr13 16654441 16654584 -85218585 - MIR SINE MIR -11 251 81 241 356 43 17 chr13 16656029 16656144 -85217025 + L2 LINE L2 3191 3308 -5 296 256 144 0 chr13 16656187 16656277 -85216892 - MIR SINE MIR -76 132 30 376 337 0 18 chr13 16657312 16657475 -85215694 + MIR SINE MIR 71 230 -32 213 305 28 77 chr13 16657792 16658005 -85215164 - MIR SINE MIR -43 219 20 699 236 56 14 chr13 16659586 16659811 -85213358 + MLT1J2 LTR MaLR 1 236 -214 2273 68 3 10 chr13 16659927 16660222 -85212947 + AluSq SINE Alu 1 293 -20 399 229 27 122 chr13 16661478 16661666 -85211503 + MER102a DNA MER1_type 153 322 -8 725 313 111 27 chr13 16661800 16662276 -85210893 + L1M4 LINE L1 3682 4197 -1949 21 71 0 0 chr13 16662415 16662457 -85210712 + AT_rich Low_complexity Low_complexity 1 42 0 1003 213 4 29 chr13 16662511 16662755 -85210414 - MLT1E1 LTR MaLR -2 622 385 1454 96 5 0 chr13 16662762 16662949 -85210220 - AluSg/x SINE Alu -3 309 122 939 248 8 20 chr13 16663050 16663304 -85209865 - AluSx SINE Alu -52 260 10 1376 214 109 19 chr13 16663321 16663714 -85209455 - MLT1E1 LTR MaLR -257 395 6 341 289 13 7 chr13 16663746 16663895 -85209274 + L1M4 LINE L1 4549 4698 -1448 226 204 45 0 chr13 16664137 16664181 -85208988 + MER21B LTR ERV1 47 92 -771 1906 153 0 11 chr13 16664181 16664497 -85208672 - AluJb SINE Alu 0 319 7 1761 242 87 23 chr13 16664719 16665285 -85207884 + MER21B LTR ERV1 157 758 -105 24 0 0 0 chr13 16665702 16665726 -85207443 + AT_rich Low_complexity Low_complexity 1 24 0 1347 209 110 128 chr13 16666283 16667237 -85205932 + LTR1B LTR ERV1 3 1020 0 227 288 18 96 chr13 16668755 16669088 -85204081 - L2 LINE L2 -665 2649 2343 194 103 0 51 chr13 16670273 16670312 -85202857 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 403 286 12 12 chr13 16670443 16670614 -85202555 - L1MC4 LINE L1 -8 8034 7864 1271 258 103 4 chr13 16670734 16671210 -85201959 - L1MC4 LINE L1 -585 7457 6935 387 191 11 11 chr13 16671323 16671412 -85201757 - L1ME1 LINE L1 -185 5981 5893 663 313 70 12 chr13 16671453 16671971 -85201198 - L1M4 LINE L1 -2376 3770 3223 531 315 79 68 chr13 16672113 16672557 -85200612 - L1MEd LINE L1 -5669 450 2 364 271 0 8 chr13 16672621 16672739 -85200430 - MER33 DNA MER1_type -2 322 206 576 215 80 10 chr13 16672794 16672994 -85200175 - MER33 DNA MER1_type -99 225 12 29 60 0 0 chr13 16673654 16673704 -85199465 + AT_rich Low_complexity Low_complexity 1 50 0 207 269 115 26 chr13 16673789 16673867 -85199302 - L2 LINE L2 -27 3245 3161 180 125 0 0 chr13 16673931 16673963 -85199206 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 204 222 0 0 chr13 16674494 16674530 -85198639 + polypyrimidine Low_complexity Low_complexity 1 36 0 269 373 28 14 chr13 16676320 16676462 -85196707 + L2 LINE L2 2685 2828 -486 262 365 88 0 chr13 16676503 16676651 -85196518 + L2 LINE L2 2894 3054 -218 186 310 113 14 chr13 16677993 16678064 -85195105 - L2 LINE L2 -9 3263 3186 246 176 0 0 chr13 16678597 16678648 -85194521 + CT-rich Low_complexity Low_complexity 2 52 0 1586 251 77 20 chr13 16678976 16679203 -85193966 + MER97c DNA MER1_type? 25 238 -852 210 37 0 0 chr13 16679203 16679230 -85193939 + (CA)n Simple_repeat Simple_repeat 2 28 0 1586 251 77 20 chr13 16679230 16679509 -85193660 + MER97c DNA MER1_type? 238 560 -530 797 230 151 42 chr13 16679558 16679915 -85193254 + L1ME1 LINE L1 5766 6161 -5 1743 175 0 7 chr13 16680489 16680769 -85192400 - AluJb SINE Alu -34 278 1 277 206 0 27 chr13 16682313 16682386 -85190783 + MER116 DNA Mariner 2 72 -8 306 106 0 0 chr13 16683175 16683222 -85189947 + (GA)n Simple_repeat Simple_repeat 2 48 0 14471 24 1 0 chr13 16684449 16686923 -85186246 + L1PA3 LINE L1 3677 6151 -4 346 264 147 48 chr13 16686937 16687168 -85186001 + L1M4 LINE L1 4566 4819 -1327 234 279 93 107 chr13 16687712 16687852 -85185317 + L2 LINE L2 2916 3053 -219 2121 192 35 76 chr13 16688132 16688548 -85184621 - L1MD3 LINE L1 -3 7992 7607 2145 85 0 21 chr13 16688548 16688829 -85184340 - AluY SINE Alu 0 311 37 2121 192 35 76 chr13 16688829 16689015 -85184154 - L1MD3 LINE L1 -388 7607 7415 500 313 85 31 chr13 16689069 16689328 -85183841 - L2 LINE L2 -9 3304 3032 2658 184 5 40 chr13 16689328 16689897 -85183272 + MER89 LTR ERV1 1 549 -10 3067 268 61 35 chr13 16689904 16690874 -85182295 - L2 LINE L2 -279 3034 2045 1121 191 69 132 chr13 16691144 16691567 -85181602 + MSTD LTR MaLR 1 396 0 325 218 26 26 chr13 16692721 16692799 -85180370 + MIR SINE MIR 72 149 -113 25 51 0 0 chr13 16693352 16693391 -85179778 + AT_rich Low_complexity Low_complexity 1 39 0 309 268 179 0 chr13 16693626 16693738 -85179431 - MIR SINE MIR -2 260 129 2542 77 0 0 chr13 16693918 16694229 -85178940 - AluY SINE Alu 0 311 1 1004 259 44 24 chr13 16694391 16694664 -85178505 + L1MEc LINE L1 159 425 -5971 2313 146 28 0 chr13 16694664 16695054 -85178115 + MER57A LTR ERV1 3 403 0 1004 259 44 24 chr13 16695054 16695793 -85177376 + L1MEc LINE L1 425 1237 -5159 327 339 57 32 chr13 16695896 16696176 -85176993 - MLT1K LTR MaLR -132 456 170 239 336 67 25 chr13 16696457 16696576 -85176593 + L2 LINE L2 3137 3260 -12 186 43 0 0 chr13 16696728 16696751 -85176418 + (T)n Simple_repeat Simple_repeat 1 23 0 297 218 13 13 chr13 16697711 16697789 -85175380 - HsTC2 DNA Tc2 -1820 78 1 376 304 52 0 chr13 16699733 16699868 -85173301 + MIR SINE MIR 51 192 -70 330 286 118 32 chr13 16700085 16700305 -85172864 + L2 LINE L2 2359 2597 -717 246 359 22 0 chr13 16700436 16700528 -85172641 + L2 LINE L2 3216 3309 -4 229 245 75 0 chr13 16700552 16700605 -85172564 - MIR SINE MIR -87 175 119 530 90 0 0 chr13 16700883 16700961 -85172208 - Alu SINE Alu -2 308 231 805 235 27 76 chr13 16702258 16702362 -85170807 - L1ME2 LINE L1 -5 6159 6051 2474 123 55 26 chr13 16702362 16702778 -85170391 + MSTC LTR MaLR 1 428 0 805 235 27 76 chr13 16702778 16703001 -85170168 - L1ME2 LINE L1 -113 6051 5848 946 231 103 41 chr13 16703108 16703498 -85169671 - MLT1G LTR MaLR -151 439 26 2029 147 14 0 chr13 16703717 16704010 -85169159 + AluSx SINE Alu 1 297 -15 404 177 0 62 chr13 16704373 16704469 -85168700 + MLT1D LTR MaLR 20 109 -517 1313 241 33 41 chr13 16704474 16704973 -85168196 + MLT1C LTR MaLR 6 505 0 896 194 112 23 chr13 16704984 16705242 -85167927 + MLT1D LTR MaLR 153 433 -72 2071 175 13 8 chr13 16705328 16705716 -85167453 + MLT1B LTR MaLR 1 390 0 220 374 84 9 chr13 16705737 16705844 -85167325 - MIR3 SINE MIR -54 154 40 341 294 126 14 chr13 16706885 16707028 -85166141 - MIR SINE MIR -84 178 20 197 257 196 34 chr13 16707022 16707170 -85165999 - MIR SINE MIR -22 240 69 * 837 201 11 11 chr13 16707495 16707684 -85165485 - MER53 DNA DNA 0 189 1 2884 152 47 80 chr13 16707792 16708639 -85164530 + L1MB8 LINE L1 5140 5964 -214 1979 104 61 0 chr13 16708639 16708917 -85164252 + AluY SINE Alu 1 295 -16 2884 152 47 80 chr13 16708917 16708958 -85164211 + L1MB8 LINE L1 5964 6005 -173 488 196 9 0 chr13 16709077 16709184 -85163985 + L1MB8 LINE L1 6064 6171 -7 1730 192 0 22 chr13 16709251 16709568 -85163601 + AluJo SINE Alu 2 311 -1 686 173 39 45 chr13 16709669 16709848 -85163321 + MLT1A1 LTR MaLR 185 362 -3 319 247 45 0 chr13 16709851 16709940 -85163229 - L1MC4a LINE L1 -1105 6703 6611 25 51 0 0 chr13 16710044 16710083 -85163086 + AT_rich Low_complexity Low_complexity 1 39 0 25285 92 21 3 chr13 16710088 16714697 -85158472 - L1PA8 LINE L1 -20 6467 1778 6805 105 3 15 chr13 16714688 16715698 -85157471 - L1PA8 LINE L1 -5454 1007 10 * 2060 156 0 3 chr13 16715713 16716015 -85157154 - AluSx SINE Alu -11 301 1 705 218 94 0 chr13 16716284 16716385 -85156784 - MER5A DNA MER1_type 0 189 99 225 0 0 0 chr13 16716385 16716410 -85156759 + (TG)n Simple_repeat Simple_repeat 1 25 0 705 218 94 0 chr13 16716410 16716478 -85156691 - MER5A DNA MER1_type -90 99 4 1612 189 106 64 chr13 16717190 16717646 -85155523 + MER34B LTR ERV1 1 467 -98 1619 206 3 10 chr13 16717646 16717947 -85155222 + AluJo SINE Alu 1 299 -13 1612 189 106 64 chr13 16717947 16718051 -85155118 + MER34B LTR ERV1 467 565 0 282 56 0 0 chr13 16718171 16718207 -85154962 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1438 182 74 4 chr13 16718210 16718357 -85154812 - AluJo SINE Alu -30 282 147 327 49 0 0 chr13 16718357 16718398 -85154771 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1438 182 74 4 chr13 16718398 16718508 -85154661 - AluJo SINE Alu -165 147 7 28 29 0 0 chr13 16718519 16718554 -85154615 + AT_rich Low_complexity Low_complexity 1 35 0 2407 61 6 10 chr13 16719038 16719350 -85153819 - AluY SINE Alu 0 311 1 279 0 0 0 chr13 16719433 16719464 -85153705 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 449 212 27 49 chr13 16719585 16719638 -85153531 - MER53 DNA DNA -2 187 134 2189 141 122 8 chr13 16719638 16720022 -85153147 - MSTA LTR MaLR 0 428 1 449 212 27 49 chr13 16720022 16720152 -85153017 - MER53 DNA DNA -55 134 8 2456 69 0 13 chr13 16720316 16720621 -85152548 - AluY SINE Alu -10 301 1 452 191 0 0 chr13 16720788 16720872 -85152297 + LTR62 LTR ERVK 1 84 -635 3355 154 40 27 chr13 16720973 16721648 -85151521 + LTR62 LTR ERVK 34 717 -2 618 277 27 27 chr13 16721697 16721921 -85151248 - MLT1H1 LTR MaLR -5 550 327 983 225 100 81 chr13 16721937 16722408 -85150761 + MER34 LTR ERV1 3 482 -60 243 241 35 0 chr13 16722408 16722495 -85150674 + (TA)n Simple_repeat Simple_repeat 1 90 0 706 222 34 36 chr13 16722611 16722854 -85150315 - MLT1H1 LTR MaLR -291 264 1 294 188 31 0 chr13 16723093 16723189 -85149980 + (TA)n Simple_repeat Simple_repeat 1 99 0 487 253 32 19 chr13 16723189 16723347 -85149822 + MER105 DNA DNA 43 202 -2 330 26 0 0 chr13 16723533 16723572 -85149597 + (CA)n Simple_repeat Simple_repeat 2 40 0 2738 7 0 3 chr13 16723781 16724083 -85149086 - AluYa5 SINE Alu -10 301 1 2546 211 31 31 chr13 16724428 16724978 -85148191 - MLT2B3 LTR ERVL -2 552 3 208 386 8 24 chr13 16726470 16726597 -85146572 - L2 LINE L2 -482 2832 2708 1017 275 144 27 chr13 16726727 16727130 -85146039 - L2 LINE L2 0 3313 2864 527 84 56 47 chr13 16727504 16727611 -85145558 + LTR45B LTR ERV1 343 450 -39 495 281 189 6 chr13 16727724 16727888 -85145281 - L2 LINE L2 -586 2728 2535 312 236 69 0 chr13 16729256 16729328 -85143841 + MIR SINE MIR 61 137 -71 1562 150 78 38 chr13 16729342 16729549 -85143620 - MER46B DNA MER2_type -2495 236 133 1848 177 7 7 chr13 16729549 16729848 -85143321 + AluJb SINE Alu 1 299 -13 1562 150 78 38 chr13 16729848 16729986 -85143183 - MER46B DNA MER2_type -2598 133 2 449 314 68 39 chr13 16729999 16730206 -85142963 - MIR SINE MIR -46 216 4 1926 206 40 0 chr13 16730370 16730749 -85142420 + MSTD LTR MaLR 1 394 -2 252 0 0 0 chr13 16730822 16730850 -85142319 + (CA)n Simple_repeat Simple_repeat 1 28 0 986 211 24 87 chr13 16731523 16731914 -85141255 + L1ME1 LINE L1 5674 6034 -132 2032 219 7 7 chr13 16731924 16732349 -85140820 - MLT1C LTR MaLR 0 467 43 2488 161 37 40 chr13 16732349 16732919 -85140250 - MER34C LTR ERV1 0 585 18 287 130 0 0 chr13 16732890 16732936 -85140233 - MLT1C LTR MaLR -421 46 1 * 437 148 188 0 chr13 16732936 16733037 -85140132 + L1ME1 LINE L1 6042 6161 -5 261 139 0 0 chr13 16733347 16733390 -85139779 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 259 114 48 chr13 16733407 16733573 -85139596 + L2 LINE L2 2915 3091 -181 7590 178 94 9 chr13 16734109 16735923 -85137246 - L1 LINE L1 -3706 2676 681 261 0 0 0 chr13 16735923 16735952 -85137217 + (TG)n Simple_repeat Simple_repeat 2 30 0 7590 178 94 9 chr13 16735952 16736079 -85137090 - L1 LINE L1 -5701 681 566 231 321 46 9 chr13 16736136 16736245 -85136924 - MER117 DNA MER1_type -51 146 34 289 331 82 0 chr13 16737209 16737361 -85135808 - MIR SINE MIR -54 208 45 515 296 43 5 chr13 16738820 16739006 -85134163 - MIR SINE MIR -14 248 56 498 248 0 0 chr13 16739683 16740100 -85133069 + (TG)n Simple_repeat Simple_repeat 1 417 0 233 268 0 0 chr13 16740516 16740572 -85132597 + (CA)n Simple_repeat Simple_repeat 1 56 0 548 232 6 0 chr13 16740584 16740761 -85132408 + (CA)n Simple_repeat Simple_repeat 1 178 0 263 275 88 47 chr13 16741067 16741238 -85131931 - L2 LINE L2 -955 2359 2182 1937 155 3 28 chr13 16744940 16745257 -85127912 - AluJb SINE Alu -3 309 1 196 294 162 0 chr13 16745258 16745326 -85127843 + MIR SINE MIR 114 192 -70 1044 266 58 30 chr13 16746189 16746584 -85126585 - MLT1I LTR MaLR 0 409 4 791 188 8 0 chr13 16746953 16747086 -85126083 + MER2 DNA MER2_type 1 134 -211 368 256 12 0 chr13 16747141 16747223 -85125946 + MER2 DNA MER2_type 263 345 0 274 189 21 53 chr13 16748295 16748390 -85124779 - MLT1I LTR MaLR 0 409 318 8928 116 58 12 chr13 16748424 16749867 -85123302 + THE1C-int LTR MaLR 67 1574 -6 1152 190 203 16 chr13 16749872 16750188 -85122981 + THE1C LTR MaLR 1 375 0 462 318 96 46 chr13 16750315 16750365 -85122804 - MIR SINE MIR -1 261 215 2302 94 0 0 chr13 16750365 16750653 -85122516 - AluSg SINE Alu -21 289 2 462 318 96 46 chr13 16750653 16750841 -85122328 - MIR SINE MIR -47 215 11 1128 249 86 90 chr13 16750996 16751220 -85121949 - MLT1E LTR MaLR -1 592 369 2348 83 0 6 chr13 16751220 16751533 -85121636 + AluY SINE Alu 1 311 0 1128 249 86 90 chr13 16751533 16751842 -85121327 - MLT1E LTR MaLR -224 369 61 366 313 41 29 chr13 16752145 16752490 -85120679 - L1ME4a LINE L1 -183 5938 5590 284 236 43 41 chr13 16752809 16752955 -85120214 - L1ME4a LINE L1 -646 5475 5327 666 266 41 22 chr13 16754816 16755083 -85118086 - L1ME4a LINE L1 -1031 5115 4844 835 228 43 17 chr13 16755305 16755661 -85117508 + L1M4 LINE L1 5144 5511 -667 239 233 0 0 chr13 16755666 16755726 -85117443 + LTR68 LTR ERV1 5 64 -676 1831 164 53 0 chr13 16755902 16756243 -85116926 + MER47A DNA MER2_type 8 366 0 3672 187 25 36 chr13 16756394 16756622 -85116547 + L1MB8 LINE L1 4902 5131 -1047 2477 177 88 4 chr13 16756622 16757102 -85116067 - MLT2B1 LTR ERVL 0 520 1 3672 187 25 36 chr13 16757102 16758073 -85115096 + L1MB8 LINE L1 5131 6084 -94 800 278 91 37 chr13 16761073 16761276 -85111893 - HAL1 LINE L1 -383 2124 1933 306 0 0 0 chr13 16761276 16761310 -85111859 + (TG)n Simple_repeat Simple_repeat 2 35 0 800 278 91 37 chr13 16761310 16761566 -85111603 - HAL1 LINE L1 -574 1933 1640 21 0 0 0 chr13 16761593 16761614 -85111555 + AT_rich Low_complexity Low_complexity 1 21 0 1366 274 120 58 chr13 16761812 16763300 -85109869 - HAL1 LINE L1 -927 1580 1 251 243 99 45 chr13 16764038 16764149 -85109020 - MER117 DNA MER1_type -79 118 2 286 136 0 0 chr13 16766250 16766294 -85106875 + AluSx SINE Alu 1 44 -258 2101 92 46 0 chr13 16766295 16766576 -85106593 + AluSx SINE Alu 15 308 -4 692 48 0 0 chr13 16767305 16767388 -85105781 + AluSx SINE Alu 23 105 -207 847 230 14 14 chr13 16767388 16767647 -85105522 - LTR12 LTR ERV1 -136 578 216 1206 166 5 45 chr13 16767795 16768018 -85105151 + AluSx SINE Alu 99 312 0 268 298 255 27 chr13 16768247 16768435 -85104734 + MIR SINE MIR 16 246 -16 198 156 0 0 chr13 16768458 16768503 -85104666 + A-rich Low_complexity Low_complexity 1 45 0 500 250 86 0 chr13 16769552 16769704 -85103465 - MLT2F LTR ERVL -14 649 485 416 286 61 0 chr13 16769947 16770094 -85103075 + MIR SINE MIR 36 191 -71 467 249 167 17 chr13 16770097 16770330 -85102839 - L2 LINE L2 0 3313 3046 1385 221 97 19 chr13 16770331 16770693 -85102476 - MLT1E LTR MaLR 0 593 204 336 334 51 68 chr13 16770855 16771117 -85102052 - L2 LINE L2 -258 3055 2798 749 216 92 80 chr13 16772479 16773002 -85100167 - L1M4 LINE L1 -1296 4850 4322 234 0 0 0 chr13 16773334 16773360 -85099809 + (TTG)n Simple_repeat Simple_repeat 2 27 0 225 289 100 22 chr13 16773731 16773821 -85099348 - MIR SINE MIR -101 161 65 22 56 0 0 chr13 16775523 16775559 -85097610 + AT_rich Low_complexity Low_complexity 1 36 0 243 324 65 14 chr13 16776012 16776151 -85097018 - L2 LINE L2 -1 3312 3167 212 338 83 8 chr13 16776411 16776544 -85096625 - L2 LINE L2 -602 2712 2570 291 71 0 0 chr13 16777394 16777436 -85095733 + (TG)n Simple_repeat Simple_repeat 1 42 0 3894 179 95 3 chr13 16778753 16779509 -85093660 + LTR1B LTR ERV1 1 826 0 2171 104 0 7 chr13 16781266 16781564 -85091605 + AluY SINE Alu 1 296 -15 22 0 0 0 chr13 16782095 16782117 -85091052 + AT_rich Low_complexity Low_complexity 1 22 0 2275 110 13 0 chr13 16782225 16782533 -85090636 + AluSx SINE Alu 1 312 0 287 299 127 0 chr13 16782786 16782920 -85090249 - L2 LINE L2 0 3272 3122 205 312 37 107 chr13 16783378 16783593 -85089576 + L2 LINE L2 298 497 -2817 260 264 58 0 chr13 16783792 16783879 -85089290 - MLT1J LTR MaLR -35 476 385 1153 233 56 15 chr13 16783899 16784290 -85088879 + LTR52 LTR ERVL 1 407 -14 919 319 31 11 chr13 16784305 16784659 -85088510 - MLT1J LTR MaLR -149 362 2 251 265 0 36 chr13 16785106 16785189 -85087980 + CT-rich Low_complexity Low_complexity 1 80 0 2085 148 0 7 chr13 16785479 16785782 -85087387 - AluSq SINE Alu -12 301 1 826 253 140 80 chr13 16785855 16786354 -85086815 - MLT1F1 LTR MaLR -10 557 4 897 324 140 44 chr13 16786369 16787777 -85085392 + L2 LINE L2 1756 3309 -4 1275 188 122 24 chr13 16787777 16788112 -85085057 - MER39 LTR ERV1 0 707 340 473 228 110 8 chr13 16788115 16788242 -85084927 - MER39 LTR ERV1 -567 140 1 895 185 85 25 chr13 16789013 16789213 -85083956 - AluJo SINE Alu -1 311 100 1547 173 121 36 chr13 16789232 16789421 -85083748 + LTR2B LTR ERV1 34 205 -285 246 62 0 0 chr13 16789421 16789453 -85083716 + (TTCTG)n Simple_repeat Simple_repeat 2 33 0 1547 173 121 36 chr13 16789453 16789684 -85083485 + LTR2B LTR ERV1 205 490 0 331 286 19 8 chr13 16789684 16789810 -85083359 - AluJ SINE Alu -197 105 17 234 224 0 0 chr13 16791201 16791250 -85081919 - L2 LINE L2 0 3313 3265 333 186 0 0 chr13 16791336 16791406 -85081763 + (CTA)n Simple_repeat Simple_repeat 2 71 0 256 200 44 33 chr13 16791921 16792011 -85081158 - HAL1 LINE L1 -476 2031 1941 589 242 81 57 chr13 16792039 16792457 -85080712 - HAL1 LINE L1 -1048 1459 1032 374 331 12 45 chr13 16792632 16792874 -85080295 + L2 LINE L2 3080 3313 0 300 282 72 76 chr13 16793418 16793680 -85079489 - L1ME LINE L1 -634 5528 5268 3456 259 46 7 chr13 16793783 16794774 -85078395 + ERVL LTR ERVL 1484 2513 -3251 533 318 10 28 chr13 16794775 16795025 -85078144 + ERVL LTR ERVL 2641 2892 -2768 453 239 99 85 chr13 16795025 16795226 -85077943 + MER58C DNA MER1_type 1 204 -11 2231 256 41 4 chr13 16795233 16795796 -85077373 + ERVL LTR ERVL 2921 3504 -2260 367 199 14 2 chr13 16795809 16795890 -85077279 + ERVL LTR ERVL 4285 4399 -1120 810 136 0 57 chr13 16796121 16796261 -85076908 - FLAM_C SINE Alu -1 132 1 2531 300 57 15 chr13 16796263 16797695 -85075474 + ERVL LTR ERVL 3633 5122 -363 1997 176 7 90 chr13 16797702 16798260 -85074909 + L1MB8 LINE L1 5667 6178 0 421 289 8 16 chr13 16798261 16798389 -85074780 + ERVL LTR ERVL 5176 5302 -462 459 146 178 0 chr13 16798396 16798531 -85074638 - L1MC3 LINE L1 -822 6975 6818 * 755 290 89 47 chr13 16798530 16799236 -85073933 - L1MEc LINE L1 -4128 2268 1533 303 293 36 72 chr13 16799426 16799760 -85073409 - L1M4 LINE L1 -2054 4092 3771 2106 99 3 54 chr13 16799922 16800236 -85072933 + AluSp SINE Alu 1 298 -15 518 283 139 9 chr13 16800679 16800909 -85072260 - HsTC2a DNA Tc2 -467 277 18 23 33 0 0 chr13 16801416 16801446 -85071723 + AT_rich Low_complexity Low_complexity 1 30 0 191 300 0 0 chr13 16801995 16802045 -85071124 - MIR SINE MIR -10 252 203 368 312 75 23 chr13 16802294 16802467 -85070702 + MLT1J2 LTR MaLR 255 436 -14 318 245 69 58 chr13 16802673 16802795 -85070374 + MIR SINE MIR 30 152 -60 2356 183 14 20 chr13 16804416 16804919 -85068250 + MER89 LTR ERV1 1 500 -59 192 261 0 0 chr13 16805542 16805607 -85067562 + CT-rich Low_complexity Low_complexity 1 65 0 225 94 0 0 chr13 16805619 16805651 -85067518 + (T)n Simple_repeat Simple_repeat 1 32 0 2153 100 4 0 chr13 16807491 16807771 -85065398 + AluSg SINE Alu 17 297 -13 217 281 0 16 chr13 16808452 16808516 -85064653 + L2 LINE L2 3210 3272 0 394 202 25 25 chr13 16808953 16809072 -85064097 - MER103 DNA DNA -25 141 23 1268 218 7 24 chr13 16809297 16809586 -85063583 + MLT1C LTR MaLR 1 284 -183 323 185 9 130 chr13 16809578 16809686 -85063483 - MER4A LTR ERV1 -197 467 373 * 228 111 22 22 chr13 16809740 16809785 -85063384 - MER4A LTR ERV1 -566 98 54 966 185 39 5 chr13 16809804 16810009 -85063160 + MLT1C LTR MaLR 248 459 -8 286 351 177 26 chr13 16810060 16810325 -85062844 + L2 LINE L2 2968 3272 0 2022 130 0 0 chr13 16811591 16811868 -85061301 - AluSx SINE Alu -15 297 21 351 96 0 0 chr13 16811900 16811952 -85061217 + (TG)n Simple_repeat Simple_repeat 2 53 0 2661 166 66 4 chr13 16811967 16812480 -85060689 - L1MB3 LINE L1 -3 6180 5636 201 208 21 0 chr13 16812613 16812661 -85060508 + (TTA)n Simple_repeat Simple_repeat 3 51 0 205 191 48 0 chr13 16813046 16813088 -85060081 - MIR SINE MIR -111 151 108 231 113 19 38 chr13 16813274 16813327 -85059842 + (TA)n Simple_repeat Simple_repeat 1 52 0 664 269 47 0 chr13 16813396 16813567 -85059602 + MIR SINE MIR 78 256 -6 831 258 77 65 chr13 16814119 16814623 -85058546 + LTR33A LTR ERVL 2 511 -12 504 291 105 12 chr13 16815357 16815529 -85057640 - MIR SINE MIR -63 199 12 2054 120 40 0 chr13 16816303 16816603 -85056566 - AluSq SINE Alu -1 312 1 371 310 166 51 chr13 16818048 16818458 -85054711 - L2 LINE L2 -1 3271 2815 186 261 0 0 chr13 16819138 16819184 -85053985 + MIR SINE MIR 171 216 -46 3678 65 43 0 chr13 16819537 16820029 -85053140 - LTR10D LTR ERV1 0 513 1 22 0 0 0 chr13 16820433 16820455 -85052714 + AT_rich Low_complexity Low_complexity 1 22 0 218 255 0 0 chr13 16821487 16821534 -85051635 + MIR SINE MIR 100 146 -116 22 35 0 0 chr13 16821589 16821618 -85051551 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 16824205 16824226 -85048943 + (CAA)n Simple_repeat Simple_repeat 2 22 0 209 176 0 20 chr13 16824776 16824827 -85048342 + CT-rich Low_complexity Low_complexity 2 51 0 691 239 171 11 chr13 16826092 16826356 -85046813 - LTR16A LTR ERVL 0 450 145 498 325 86 11 chr13 16826450 16826730 -85046439 + L2 LINE L2 2384 2684 -630 1014 231 37 34 chr13 16826960 16827310 -85045859 - LTR37A LTR ERV1 -58 368 18 361 204 19 46 chr13 16827415 16827523 -85045646 - MER94 DNA DNA -29 105 1 331 252 27 45 chr13 16830030 16830141 -85043028 - L1ME4a LINE L1 -69 6052 5944 446 265 112 19 chr13 16830145 16830360 -85042809 - L1ME4a LINE L1 -254 5867 5633 450 0 0 0 chr13 16830376 16830426 -85042743 + (TG)n Simple_repeat Simple_repeat 2 51 0 249 286 29 14 chr13 16831886 16831956 -85041213 - L2 LINE L2 -11 3261 3191 186 143 0 0 chr13 16831986 16832021 -85041148 + (TAG)n Simple_repeat Simple_repeat 3 37 0 452 254 147 52 chr13 16832021 16832253 -85040916 - MIR SINE MIR 0 262 9 183 307 27 40 chr13 16832294 16832369 -85040800 + MIR SINE MIR 89 162 -100 300 118 0 0 chr13 16833091 16833142 -85040027 + L1MB2 LINE L1 6079 6129 -42 227 196 0 18 chr13 16833707 16833763 -85039406 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 257 77 26 0 chr13 16834750 16834789 -85038380 - MSTD LTR MaLR 0 396 357 504 157 11 0 chr13 16834800 16834889 -85038280 - MLT1A1-int LTR MaLR -1645 90 1 1391 210 8 72 chr13 16834889 16835279 -85037890 - MLT1A1 LTR MaLR 0 365 1 798 199 117 123 chr13 16835352 16835719 -85037450 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr13 16835792 16835813 -85037356 + AT_rich Low_complexity Low_complexity 1 21 0 404 280 88 39 chr13 16836550 16836732 -85036437 - L2 LINE L2 -4 3309 3119 655 92 0 0 chr13 16837343 16837487 -85035682 + AluSc SINE Alu 195 338 0 292 284 23 0 chr13 16837842 16837930 -85035239 + L1ME LINE L1 5553 5642 -479 1293 274 108 27 chr13 16837945 16838724 -85034445 + L2 LINE L2 2446 3310 -3 744 175 68 178 chr13 16838940 16839095 -85034074 + MLT1A1 LTR MaLR 4 174 -191 1639 119 0 5 chr13 16839095 16839314 -85033855 - AluSg/x SINE Alu -20 290 73 744 175 68 178 chr13 16839314 16839557 -85033612 + MLT1A1 LTR MaLR 174 358 -7 313 259 309 31 chr13 16841432 16841594 -85031575 - MIR SINE MIR -48 214 8 576 295 84 50 chr13 16841630 16841952 -85031217 + MLT1G1 LTR MaLR 47 379 -216 244 314 20 72 chr13 16842089 16842242 -85030927 - MER45C DNA AcHobo -488 465 321 646 257 208 4 chr13 16842245 16842486 -85030683 - MER45C DNA AcHobo -576 377 88 337 206 48 0 chr13 16843368 16843431 -85029738 + MER5A DNA MER1_type 124 189 0 1771 189 0 0 chr13 16843794 16844085 -85029084 - AluJo SINE Alu -19 293 3 292 277 176 34 chr13 16844098 16844246 -85028923 + MIR SINE MIR 53 221 -41 180 307 9 53 chr13 16844272 16844386 -85028783 + MIR SINE MIR 108 216 -46 360 0 0 0 chr13 16845330 16845370 -85027799 + (CA)n Simple_repeat Simple_repeat 2 41 0 3134 179 52 42 chr13 16845998 16846779 -85026390 - L1MB1 LINE L1 -12 6220 5432 1574 224 10 0 chr13 16846780 16847163 -85026006 - L1MB1 LINE L1 -912 5298 4912 1668 217 24 62 chr13 16847171 16847566 -85025603 - L1MB1 LINE L1 -4519 1622 1214 5705 43 22 18 chr13 16847566 16848268 -85024901 + SVA Other Other 665 1372 -14 186 71 0 0 chr13 16848268 16848296 -85024873 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 5705 43 22 18 chr13 16848296 16848307 -85024862 + SVA Other Other 1372 1381 -5 1668 217 24 62 chr13 16848307 16848603 -85024566 - L1MB1 LINE L1 -4927 1214 640 266 314 12 0 chr13 16848604 16848690 -85024479 - L1M3c LINE L1 -5151 990 904 227 286 39 78 chr13 16849167 16849321 -85023848 - L1MB1 LINE L1 -5487 644 497 819 365 69 11 chr13 16849350 16849783 -85023386 - L1MB1 LINE L1 -5683 458 1 2486 91 0 0 chr13 16849957 16850265 -85022904 + AluSc SINE Alu 1 308 -1 358 306 180 27 chr13 16851057 16851279 -85021890 + MIR SINE MIR 5 260 -2 246 174 152 43 chr13 16851274 16851366 -85021803 + L2 LINE L2 3134 3235 -78 * 1790 152 0 4 chr13 16852645 16852914 -85020255 - AluSx SINE Alu -42 270 3 847 248 9 77 chr13 16853250 16853573 -85019596 - L1MC5 LINE L1 -1021 6940 6640 2076 138 0 0 chr13 16853641 16853931 -85019238 - AluSx SINE Alu -22 290 1 499 320 59 41 chr13 16854297 16854684 -85018485 - HAL1b LINE L1 -734 614 221 684 211 26 10 chr13 16854843 16855037 -85018132 + L1MA4A LINE L1 5926 6122 -181 429 228 0 0 chr13 16855041 16855133 -85018036 + L1MA4A LINE L1 6189 6280 -23 2257 102 3 10 chr13 16855184 16855489 -85017680 - AluY SINE Alu -8 303 1 1807 226 51 44 chr13 16856655 16856924 -85016245 + L1MC4 LINE L1 7282 7548 -494 6733 76 5 2 chr13 16856924 16857881 -85015288 + L1PA7 LINE L1 5194 6152 -2 1807 226 51 44 chr13 16857881 16858203 -85014966 + L1MC4 LINE L1 7548 7877 -165 542 253 7 47 chr13 16858203 16858353 -85014816 + MER82 DNA MER2_type 1 144 -509 1217 185 25 126 chr13 16858353 16858758 -85014411 - MLT1A1 LTR MaLR 0 365 2 815 201 0 0 chr13 16858759 16858913 -85014256 + MER82 DNA MER2_type 140 293 -360 492 226 7 15 chr13 16859005 16859142 -85014027 + L1MC4 LINE L1 7907 8042 0 23 33 0 0 chr13 16860389 16860419 -85012750 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 16860494 16860515 -85012654 + AT_rich Low_complexity Low_complexity 1 21 0 197 284 134 0 chr13 16862097 16862164 -85011005 + MIR3 SINE MIR 81 156 -52 208 0 62 0 chr13 16862197 16862229 -85010940 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3225 22 0 0 chr13 16862229 16862599 -85010570 - L1PA3 LINE L1 -18 6137 5768 23 0 0 0 chr13 16863872 16863895 -85009274 + AT_rich Low_complexity Low_complexity 1 23 0 879 311 73 74 chr13 16864300 16864447 -85008722 + L1MEd LINE L1 75 221 -5898 1983 132 10 0 chr13 16864447 16864735 -85008434 - AluSc SINE Alu -18 291 1 879 311 73 74 chr13 16864735 16865058 -85008111 + L1MEd LINE L1 221 543 -5576 2598 153 29 14 chr13 16865058 16865541 -85007628 + L1MB2 LINE L1 5682 6171 0 879 311 73 74 chr13 16865541 16866235 -85006934 + L1MEd LINE L1 543 1239 -4880 333 200 17 0 chr13 16866291 16866351 -85006818 + MER70B LTR ERVL 1 61 -517 312 87 0 0 chr13 16866351 16866397 -85006772 + MADE1 DNA Mariner 1 46 -34 * 2156 213 17 5 chr13 16866396 16866804 -85006365 + MER70A LTR ERVL 60 472 0 323 278 86 35 chr13 16866866 16867121 -85006048 + L1MEd LINE L1 1430 1697 -4613 34 0 0 0 chr13 16867387 16867421 -85005748 + AT_rich Low_complexity Low_complexity 1 34 0 239 264 11 11 chr13 16867438 16867525 -85005644 - L1M4 LINE L1 -3525 2621 2535 1205 279 73 42 chr13 16868612 16869985 -85003184 + L1MDa LINE L1 1811 3242 -3298 699 310 108 23 chr13 16869992 16870379 -85002790 + L1MDa LINE L1 3395 3814 -2726 1418 278 79 30 chr13 16870501 16871196 -85001973 + L1MDa LINE L1 4090 4749 -1791 2401 211 19 64 chr13 16871196 16871837 -85001332 - LTR9 LTR ERV1 0 612 1 1418 278 79 30 chr13 16871837 16872335 -85000834 + L1MDa LINE L1 4749 5437 -1103 777 288 36 25 chr13 16872365 16872643 -85000526 + MLT1G LTR MaLR 10 290 -300 1752 220 65 21 chr13 16872713 16872889 -85000280 - MLT1D LTR MaLR 0 505 338 2021 138 6 13 chr13 16872889 16873201 -84999968 - AluSx SINE Alu -2 310 1 1752 220 65 21 chr13 16873201 16873497 -84999672 - MLT1D LTR MaLR -167 338 12 508 217 52 40 chr13 16873508 16873680 -84999489 + MLT1F LTR MaLR 356 507 -35 443 331 66 8 chr13 16874525 16874782 -84998387 - L3 LINE CR1 -166 1411 1140 413 299 140 62 chr13 16874786 16875251 -84997918 - MLT1J LTR MaLR 0 511 11 1753 127 0 0 chr13 16875311 16875548 -84997621 + AluSx SINE Alu 63 299 -13 428 346 56 5 chr13 16875743 16875957 -84997212 - L3 LINE CR1 -685 892 668 701 294 93 40 chr13 16877703 16878230 -84994939 + MLT1H1 LTR MaLR 1 555 0 407 277 216 28 chr13 16878435 16878648 -84994521 + MIR SINE MIR 10 262 0 228 86 0 0 chr13 16878836 16878871 -84994298 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2495 32 0 3 chr13 16878873 16879157 -84994012 - AluY SINE Alu -28 283 1 585 299 0 0 chr13 16879916 16880050 -84993119 + MER63 DNA MER1_type 1 760 -302 193 292 0 0 chr13 16881399 16881447 -84991722 - MIR SINE MIR -67 141 94 363 310 18 26 chr13 16881618 16881731 -84991438 - MIR SINE MIR -137 125 14 2579 97 11 6 chr13 16881992 16882354 -84990815 - THE1B LTR MaLR 0 364 1 344 22 22 0 chr13 16883009 16883054 -84990115 + (TG)n Simple_repeat Simple_repeat 2 47 0 25 51 0 0 chr13 16884270 16884309 -84988860 + AT_rich Low_complexity Low_complexity 1 39 0 1692 216 39 18 chr13 16884828 16885212 -84987957 - MSTD LTR MaLR -2 394 3 556 200 26 113 chr13 16885445 16885651 -84987518 + LTR37B LTR ERV1 186 358 -110 1517 174 24 24 chr13 16885651 16885939 -84987230 - AluJo SINE Alu -24 288 1 556 200 26 113 chr13 16885939 16886042 -84987127 + LTR37B LTR ERV1 358 468 0 428 272 73 31 chr13 16886476 16886667 -84986502 - MIR SINE MIR -43 219 21 368 348 76 67 chr13 16888419 16888935 -84984234 + L2 LINE L2 2766 3292 -21 1770 156 8 78 chr13 16889328 16889713 -84983456 + MLT1B LTR MaLR 1 358 -32 305 367 61 18 chr13 16890300 16890529 -84982640 + MIR SINE MIR 8 246 -16 552 261 65 62 chr13 16891604 16891864 -84981305 + MLT1H LTR MaLR 226 486 -63 223 286 14 14 chr13 16892783 16892853 -84980316 - MIR SINE MIR 0 262 193 1822 156 0 36 chr13 16893324 16893632 -84979537 + AluJo SINE Alu 1 297 -15 1653 239 90 37 chr13 16893731 16894220 -84978949 + MLT2B1 LTR ERVL 1 515 -5 230 43 29 87 chr13 16894724 16894793 -84978376 + (TA)n Simple_repeat Simple_repeat 1 65 0 243 45 26 110 chr13 16894823 16894978 -84978191 + (TA)n Simple_repeat Simple_repeat 2 143 0 520 137 11 33 chr13 16895005 16895188 -84977981 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 517 7 104 37 chr13 16895183 16895454 -84977715 + (TA)n Simple_repeat Simple_repeat 1 289 0 * 280 254 42 17 chr13 16895519 16895637 -84977532 - L1MEc LINE L1 -4700 1696 1576 * 848 142 90 52 chr13 16895635 16895787 -84977382 - L1MA9 LINE L1 0 6312 6148 216 0 0 0 chr13 16895787 16895811 -84977358 + (TG)n Simple_repeat Simple_repeat 1 24 0 848 142 90 52 chr13 16895811 16895870 -84977299 - L1MA9 LINE L1 -164 6148 6093 249 33 0 0 chr13 16895904 16895934 -84977235 + (TA)n Simple_repeat Simple_repeat 1 30 0 1810 174 15 9 chr13 16895971 16896311 -84976858 - MER47A DNA MER2_type -3 363 22 363 96 0 0 chr13 16896313 16896365 -84976804 + (CA)n Simple_repeat Simple_repeat 2 53 0 230 79 0 26 chr13 16896529 16896567 -84976602 + (CAT)n Simple_repeat Simple_repeat 2 38 0 623 292 68 9 chr13 16896599 16896818 -84976351 + MIR SINE MIR 31 262 0 686 289 63 24 chr13 16896858 16897273 -84975896 - L1MCc LINE L1 -4121 3001 2571 41 0 0 0 chr13 16897312 16897353 -84975816 + AT_rich Low_complexity Low_complexity 1 41 0 16365 114 10 4 chr13 16897485 16900779 -84972390 - L1PA8A LINE L1 0 6446 3151 5522 184 11 33 chr13 16900766 16902826 -84970343 - L1PA8A LINE L1 -4274 2187 1 428 271 66 11 chr13 16902828 16903009 -84970160 - L1MCc LINE L1 -4639 2483 2293 * 5278 168 55 3 chr13 16902997 16903496 -84969673 - L1MA9 LINE L1 0 6312 5840 276 30 0 0 chr13 16903496 16903529 -84969640 + (TG)n Simple_repeat Simple_repeat 1 33 0 5278 168 55 3 chr13 16903529 16904182 -84968987 - L1MA9 LINE L1 -472 5840 5111 600 284 77 61 chr13 16904182 16904748 -84968421 - L1MCc LINE L1 -4805 2317 1761 1819 89 0 4 chr13 16904748 16904983 -84968186 - AluSc SINE Alu -4 305 72 600 284 77 61 chr13 16904983 16905385 -84967784 - L1MCc LINE L1 -5361 1761 1130 229 335 75 62 chr13 16905611 16905984 -84967185 - L1MCc LINE L1 -5965 458 81 2254 114 7 3 chr13 16906153 16906461 -84966708 - AluSc SINE Alu 0 309 1 313 227 209 18 chr13 16906801 16906911 -84966258 - MIR SINE MIR -81 181 51 189 306 46 37 chr13 16906992 16907100 -84966069 - MIR SINE MIR -59 203 95 1837 144 85 0 chr13 16908815 16909134 -84964035 - MER46B DNA MER2_type -14 222 2 2351 100 3 0 chr13 16910314 16910614 -84962555 + AluSx SINE Alu 1 301 -11 208 325 58 58 chr13 16911140 16911294 -84961875 - MIR SINE MIR -56 206 53 750 174 0 0 chr13 16911330 16911451 -84961718 - FLAM_A SINE Alu 0 142 22 2187 199 31 51 chr13 16911509 16912021 -84961148 - MLT1D LTR MaLR -2 503 2 249 277 65 65 chr13 16912292 16912447 -84960722 - MER103 DNA DNA -1 165 11 279 373 78 33 chr13 16913584 16913737 -84959432 - L2 LINE L2 -6 3266 3107 430 222 35 62 chr13 16913973 16914117 -84959052 - MER5B DNA MER1_type -1 177 38 496 276 60 10 chr13 16914300 16914450 -84958719 + MIR SINE MIR 2 153 -64 1825 248 113 4 chr13 16914490 16915020 -84958149 + L1MC4 LINE L1 7467 7995 0 632 288 85 33 chr13 16915848 16916272 -84956897 - L1MC/D LINE L1 -1998 5810 5365 496 284 168 5 chr13 16916485 16916682 -84956487 + MIR SINE MIR 23 251 -11 1644 194 54 44 chr13 16918308 16918694 -84954475 + MLT1B LTR MaLR 1 390 0 212 344 0 0 chr13 16919136 16919200 -84953969 - MIR3 SINE MIR -35 173 110 312 286 150 7 chr13 16919228 16919368 -84953801 + MIR SINE MIR 97 256 -6 1007 181 6 0 chr13 16919746 16919917 -84953252 + FRAM SINE Alu 1 168 -8 2243 99 3 3 chr13 16919917 16920209 -84952960 + AluSc SINE Alu 1 292 -17 332 198 0 12 chr13 16920235 16920316 -84952853 + GA-rich Low_complexity Low_complexity 3 82 0 226 301 27 0 chr13 16920762 16920835 -84952334 - MLT1J LTR MaLR -59 452 378 634 256 160 8 chr13 16920903 16921141 -84952028 - MLT1J LTR MaLR -237 274 1 2307 93 7 0 chr13 16921225 16921515 -84951654 - AluSq SINE Alu -21 292 1 354 23 0 0 chr13 16921919 16921962 -84951207 + (CA)n Simple_repeat Simple_repeat 1 43 0 348 24 0 0 chr13 16921961 16922002 -84951167 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 257 271 86 76 chr13 16922081 16922291 -84950878 - MER102b DNA MER1_type -49 292 81 252 122 0 0 chr13 16922670 16922711 -84950458 + (TG)n Simple_repeat Simple_repeat 1 41 0 181 337 144 10 chr13 16922884 16923086 -84950083 - L2 LINE L2 -531 2783 2555 2128 132 0 0 chr13 16923282 16923578 -84949591 + AluSx SINE Alu 1 296 -16 1137 270 167 22 chr13 16924123 16924579 -84948590 - MLT1G1 LTR MaLR -1 594 73 390 301 66 88 chr13 16924878 16925104 -84948065 + L2 LINE L2 3045 3265 -7 279 312 76 27 chr13 16925997 16926189 -84946980 + MIR SINE MIR 6 208 -54 237 234 117 63 chr13 16926189 16926300 -84946869 + L2 LINE L2 3197 3313 0 227 259 0 17 chr13 16926301 16926359 -84946810 + MIR SINE MIR 204 260 -2 201 304 11 22 chr13 16926366 16926458 -84946711 + (TAG)n Simple_repeat Simple_repeat 1 91 0 1041 153 119 84 chr13 16927203 16927492 -84945677 - MER57A LTR ERV1 0 403 111 1876 140 0 4 chr13 16927500 16927803 -84945366 + AluSx SINE Alu 15 316 0 1760 319 15 33 chr13 16928070 16928218 -84944951 - MER57-int LTR ERV1 -588 6949 6800 1874 179 55 0 chr13 16928218 16928548 -84944621 + MER7A DNA MER2_type 1 346 0 1760 319 15 33 chr13 16928548 16929130 -84944039 - MER57-int LTR ERV1 -737 6800 6232 2228 57 0 24 chr13 16929565 16929862 -84943307 + AluY SINE Alu 1 290 -21 233 29 29 0 chr13 16929862 16929896 -84943273 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 893 271 73 84 chr13 16930111 16930737 -84942432 - MER57-int LTR ERV1 -780 6207 3930 1527 204 118 40 chr13 16930887 16931343 -84941826 - MER57-int LTR ERV1 -1716 5821 5330 379 308 0 0 chr13 16931769 16931902 -84941267 + (TA)n Simple_repeat Simple_repeat 1 133 0 439 243 33 59 chr13 16933291 16933372 -84939797 - MIR SINE MIR -112 150 73 1863 174 0 10 chr13 16933372 16933671 -84939498 - AluSx SINE Alu -16 296 1 439 243 33 59 chr13 16933671 16933741 -84939428 - MIR SINE MIR -189 73 3 2798 10 0 7 chr13 16934334 16934641 -84938528 - AluY SINE Alu -6 305 1 233 245 0 0 chr13 16935191 16935244 -84937925 - L2 LINE L2 -4 3309 3257 2381 89 3 0 chr13 16936685 16936989 -84936180 + AluY SINE Alu 1 305 -6 255 212 35 88 chr13 16937132 16937207 -84935962 + MIR SINE MIR 130 199 -63 2150 246 25 14 chr13 16937207 16937719 -84935450 - LTR40a LTR ERVL 0 519 2 255 212 35 88 chr13 16937719 16937756 -84935413 + MIR SINE MIR 199 236 -26 2265 115 0 0 chr13 16938569 16938874 -84934295 - AluSx SINE Alu -7 305 1 359 225 166 0 chr13 16939106 16939244 -84933925 - MER5A DNA MER1_type -20 158 4 2347 93 0 0 chr13 16940984 16941284 -84931885 + AluSx SINE Alu 1 300 -12 2415 59 0 29 chr13 16941286 16941592 -84931577 + AluY SINE Alu 3 299 -12 245 109 22 0 chr13 16942356 16942402 -84930767 + (TG)n Simple_repeat Simple_repeat 1 47 0 624 276 126 0 chr13 16942556 16942730 -84930439 + MIR SINE MIR 18 213 -49 267 321 92 18 chr13 16942978 16943087 -84930082 - MIR SINE MIR -126 136 20 29 0 0 0 chr13 16943104 16943133 -84930036 + AT_rich Low_complexity Low_complexity 1 29 0 427 296 70 28 chr13 16943952 16944094 -84929075 + L2 LINE L2 3125 3272 0 619 280 62 36 chr13 16944235 16944542 -84928627 - MER102b DNA MER1_type 0 341 27 225 213 131 0 chr13 16944573 16944634 -84928535 - MIR SINE MIR -142 120 52 205 88 29 0 chr13 16944664 16944698 -84928471 + (TA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr13 16944709 16944737 -84928432 + AT_rich Low_complexity Low_complexity 1 28 0 1594 55 10 30 chr13 16944890 16945091 -84928078 - MER107 DNA MER1_type 0 197 1 377 225 11 34 chr13 16945209 16945298 -84927871 - MIR SINE MIR -171 91 5 1997 120 28 0 chr13 16945427 16945710 -84927459 + AluSg SINE Alu 1 291 -19 617 179 11 17 chr13 16945732 16945911 -84927258 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 665 171 23 0 chr13 16945946 16946121 -84927048 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 180 0 0 0 chr13 16946163 16946183 -84926986 + (CCA)n Simple_repeat Simple_repeat 1 20 0 219 307 0 0 chr13 16946452 16946589 -84926580 + (TG)n Simple_repeat Simple_repeat 2 138 0 480 242 133 117 chr13 16946930 16947314 -84925855 + LTR33 LTR ERVL 82 471 -50 206 100 0 50 chr13 16948303 16948343 -84924826 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 1204 85 13 0 chr13 16949487 16949640 -84923529 - L1PA14 LINE L1 -4 6157 6003 374 275 25 25 chr13 16952429 16952549 -84920620 - MIR SINE MIR 0 262 143 239 346 0 66 chr13 16952548 16952730 -84920439 + L2 LINE L2 2342 2511 -803 * 262 255 98 0 chr13 16952772 16952874 -84920295 + L2 LINE L2 2809 2920 -352 598 348 68 20 chr13 16952922 16953314 -84919855 + L2 LINE L2 2577 2996 -317 292 270 90 36 chr13 16953684 16953795 -84919374 - MIR SINE MIR -123 139 23 1902 173 28 30 chr13 16954221 16954779 -84918390 + MLT2A2 LTR ERVL 2 554 0 387 113 0 0 chr13 16955769 16955831 -84917338 + (CA)n Simple_repeat Simple_repeat 1 62 0 2246 165 24 14 chr13 16956395 16956820 -84916349 + MSTB1 LTR MaLR 1 429 -3 30 69 0 0 chr13 16957845 16957903 -84915266 + AT_rich Low_complexity Low_complexity 1 58 0 2122 84 44 3 chr13 16958546 16958843 -84914326 - L1PB1 LINE L1 0 6151 5843 321 259 6 18 chr13 16959513 16959679 -84913490 + CT-rich Low_complexity Low_complexity 1 164 0 255 367 115 0 chr13 16962330 16962469 -84910700 + L2 LINE L2 2828 2982 -331 1793 185 33 14 chr13 16962510 16962878 -84910291 + THE1C LTR MaLR 1 375 0 9083 131 13 33 chr13 16962884 16964469 -84908700 + THE1C-int LTR MaLR 27 1580 0 2108 146 30 19 chr13 16964469 16964840 -84908329 + THE1C LTR MaLR 1 375 0 187 213 106 0 chr13 16964840 16964887 -84908282 + L2 LINE L2 3011 3062 -251 308 313 97 7 chr13 16965914 16966058 -84907111 + MIR SINE MIR 57 213 -49 236 227 0 0 chr13 16966264 16966308 -84906861 - LTR33 LTR ERVL 0 521 478 804 216 22 5 chr13 16966557 16966742 -84906427 - MER5A DNA MER1_type 0 189 2 3053 164 44 81 chr13 16967255 16967763 -84905406 + L1MC3 LINE L1 6968 7434 -351 1744 129 3 96 chr13 16967763 16967877 -84905292 + AluSx SINE Alu 2 125 -177 228 35 0 0 chr13 16967877 16967906 -84905263 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1744 129 3 96 chr13 16967906 16968123 -84905046 + AluSx SINE Alu 125 302 0 3053 164 44 81 chr13 16968123 16968455 -84904714 + L1MC3 LINE L1 7434 7777 -8 390 21 0 0 chr13 16969419 16969466 -84903703 + (CA)n Simple_repeat Simple_repeat 1 47 0 263 348 107 30 chr13 16969581 16969880 -84903289 - L2 LINE L2 -680 2634 2313 318 146 0 0 chr13 16970180 16970228 -84902941 + L2 LINE L2 3266 3313 0 1985 133 75 20 chr13 16970565 16970910 -84902259 - THE1B LTR MaLR 0 364 1 222 204 20 0 chr13 16972257 16972306 -84900863 - L2 LINE L2 -13 3259 3210 640 283 128 5 chr13 16974389 16974622 -84898547 + MIR SINE MIR 8 248 -14 255 203 0 0 chr13 16977222 16977286 -84895883 + GA-rich Low_complexity Low_complexity 1 64 0 22 56 0 0 chr13 16977932 16977968 -84895201 + AT_rich Low_complexity Low_complexity 1 36 0 328 200 300 9 chr13 16978190 16978300 -84894869 - MIR SINE MIR -33 229 88 334 265 27 7 chr13 16978386 16978533 -84894636 + L1MC/D LINE L1 4456 4605 -1541 967 331 82 39 chr13 16979253 16979766 -84893403 + L2 LINE L2 1326 1860 -1454 820 92 9 0 chr13 16979773 16979882 -84893287 + AluSg/x SINE Alu 189 298 -11 273 303 71 0 chr13 16979884 16979983 -84893186 + L2 LINE L2 1854 1959 -1355 200 208 146 0 chr13 16980146 16980194 -84892975 - MIR SINE MIR -4 258 204 * 1220 284 186 46 chr13 16980177 16981326 -84891843 + L2 LINE L2 1991 3313 0 565 273 103 39 chr13 16981334 16981871 -84891298 + L1MC/D LINE L1 5197 5761 -409 23 33 0 0 chr13 16981926 16981956 -84891213 + AT_rich Low_complexity Low_complexity 1 30 0 1548 265 53 14 chr13 16982080 16982593 -84890576 - MLT1H1 LTR MaLR -6 549 17 198 351 38 8 chr13 16982758 16982889 -84890280 - L2 LINE L2 -1004 2310 2176 36 40 0 0 chr13 16983388 16983438 -84889731 + AT_rich Low_complexity Low_complexity 1 50 0 2311 75 3 47 chr13 16983637 16983958 -84889211 - AluY SINE Alu -4 307 1 378 310 46 56 chr13 16984012 16984341 -84888828 - L1ME3A LINE L1 -214 5956 5629 408 300 125 21 chr13 16984381 16984708 -84888461 - MLT1L LTR MaLR -52 563 203 334 292 33 2 chr13 16984904 16985077 -84888092 - L1ME3A LINE L1 -561 5601 5423 375 306 99 17 chr13 16985086 16985318 -84887851 - L1ME3A LINE L1 -756 5390 5140 691 278 15 93 chr13 16985500 16985770 -84887399 - MIR SINE MIR -13 249 1 228 277 0 0 chr13 16985973 16986020 -84887149 + polypyrimidine Low_complexity Low_complexity 4 50 0 230 363 44 26 chr13 16987478 16987591 -84885578 - L2 LINE L2 -36 3236 3122 2540 71 3 0 chr13 16988676 16988986 -84884183 - AluY SINE Alu 0 311 1 5709 89 3 44 chr13 16992263 16993177 -84879992 - L1PA11 LINE L1 -14 6160 5284 378 316 44 13 chr13 16993251 16993409 -84879760 - MIR SINE MIR 0 262 100 234 292 80 24 chr13 16993532 16993782 -84879387 + L1ME LINE L1 4342 4605 -1541 232 335 92 38 chr13 16993955 16994194 -84878975 - L2 LINE L2 -2607 707 456 24 0 0 0 chr13 16994244 16994268 -84878901 + AT_rich Low_complexity Low_complexity 1 24 0 462 329 59 29 chr13 16994384 16994949 -84878220 + L1ME LINE L1 4904 5545 -576 1748 166 13 23 chr13 16995174 16995475 -84877694 - AluJb SINE Alu -10 302 5 1686 148 3 42 chr13 16995790 16995931 -84877238 + AluSx SINE Alu 1 127 -185 2098 134 20 0 chr13 16995931 16996237 -84876932 + AluSx SINE Alu 1 312 0 1686 148 3 42 chr13 16996237 16996379 -84876790 + AluSx SINE Alu 127 273 -39 861 40 32 8 chr13 16996383 16996508 -84876661 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 26 30 0 0 chr13 16997496 16997529 -84875640 + AT_rich Low_complexity Low_complexity 1 33 0 466 277 95 92 chr13 16998311 16998636 -84874533 - L2 LINE L2 -1 3312 2987 427 304 51 42 chr13 17000191 17000357 -84872812 + MIR SINE MIR 44 214 -48 2349 124 91 8 chr13 17000357 17000752 -84872417 - MSTA LTR MaLR 0 428 1 427 304 51 42 chr13 17000752 17000802 -84872367 + MIR SINE MIR 214 262 0 199 288 75 62 chr13 17000814 17000894 -84872275 - L2 LINE L2 -25 3288 3208 390 354 78 0 chr13 17002420 17002612 -84870557 + MIR SINE MIR 41 247 -15 5813 186 70 12 chr13 17003468 17003827 -84869342 - L1PBa LINE L1 -3302 3560 3223 396 55 0 0 chr13 17003827 17003882 -84869287 + (TA)n Simple_repeat Simple_repeat 1 55 0 5813 186 70 12 chr13 17003882 17005094 -84868075 - L1PBa LINE L1 -3639 3223 1876 3198 156 7 31 chr13 17005095 17006222 -84866947 + L1PB1 LINE L1 4679 5791 -360 490 147 8 31 chr13 17006222 17006351 -84866818 + (TA)n Simple_repeat Simple_repeat 1 126 0 2327 101 14 20 chr13 17006351 17006706 -84866463 + L1PB1 LINE L1 5782 6134 -17 300 299 41 10 chr13 17008019 17008116 -84865053 + L2 LINE L2 3208 3307 -6 197 311 0 0 chr13 17008481 17008526 -84864643 + L2 LINE L2 3255 3299 -14 505 250 8 23 chr13 17009286 17009414 -84863755 + MIR SINE MIR 66 191 -71 1895 161 49 14 chr13 17009445 17009794 -84863375 - MLT1A1 LTR MaLR -2 363 3 281 293 38 45 chr13 17009945 17010078 -84863091 + L2 LINE L2 2439 2570 -744 269 276 109 13 chr13 17013077 17013233 -84859936 - ERVL LTR ERVL -335 5429 5259 467 313 108 11 chr13 17013461 17013729 -84859440 - ERVL LTR ERVL -2462 3302 3009 495 334 72 20 chr13 17014078 17014383 -84858786 - ERVL LTR ERVL -3163 2491 2171 3084 155 44 24 chr13 17014385 17014951 -84858218 + L1MB7 LINE L1 5280 5862 -322 2129 135 3 0 chr13 17014951 17015254 -84857915 + AluSx SINE Alu 1 304 -8 3084 155 44 24 chr13 17015254 17015321 -84857848 + L1MB7 LINE L1 5862 5926 -258 1745 313 50 13 chr13 17015299 17015992 -84857177 - L1MEc LINE L1 -5646 750 32 * 3344 269 48 54 chr13 17015989 17016953 -84856216 - L1MEc LINE L1 -1336 4879 3911 2339 109 0 0 chr13 17016953 17017266 -84855903 - AluSq SINE Alu 0 313 1 3344 269 48 54 chr13 17017266 17019060 -84854109 - L1MEc LINE L1 -2304 3911 2108 1717 142 15 4 chr13 17019060 17019328 -84853841 - AluSx SINE Alu -3 309 39 3344 269 48 54 chr13 17019328 17020696 -84852473 - L1MEc LINE L1 -4107 2108 288 246 83 333 0 chr13 17020704 17020752 -84852417 - L1M1 LINE L1 -5601 1964 1901 497 306 8 0 chr13 17020847 17020971 -84852198 - L2 LINE L2 0 3313 3189 13979 176 52 22 chr13 17022609 17025219 -84847950 + L1MA4A LINE L1 17 2704 -4861 10631 181 36 23 chr13 17025212 17028346 -84844823 + L1MA4A LINE L1 4462 7637 -85 * 2951 153 56 52 chr13 17028346 17028956 -84844213 + LTR9 LTR ERV1 1 612 0 10631 181 36 23 chr13 17028956 17029016 -84844153 + L1MA4A LINE L1 7637 7695 -27 22 0 0 0 chr13 17029030 17029052 -84844117 + AT_rich Low_complexity Low_complexity 1 22 0 2338 70 37 0 chr13 17029102 17029402 -84843767 + AluY SINE Alu 1 311 0 224 363 44 26 chr13 17030487 17030600 -84842569 + L2 LINE L2 3122 3236 -36 228 277 0 0 chr13 17032056 17032103 -84841066 + polypurine Low_complexity Low_complexity 4 50 0 693 278 15 93 chr13 17032306 17032576 -84840593 + MIR SINE MIR 1 249 -13 349 275 133 24 chr13 17032758 17033172 -84839997 + L1ME LINE L1 5140 5601 -561 513 300 125 21 chr13 17033368 17033695 -84839474 + MLT1L LTR MaLR 203 563 -52 241 326 38 8 chr13 17033787 17033919 -84839250 + L1ME LINE L1 5685 5820 -350 2297 75 3 47 chr13 17034118 17034439 -84838730 + AluY SINE Alu 1 307 -4 36 40 0 0 chr13 17034638 17034688 -84838481 + AT_rich Low_complexity Low_complexity 1 50 0 194 351 38 8 chr13 17035187 17035318 -84837851 + L2 LINE L2 2176 2310 -1004 1699 267 53 14 chr13 17035483 17035996 -84837173 + MLT1H1 LTR MaLR 17 549 -6 24 32 0 0 chr13 17036120 17036151 -84837018 + AT_rich Low_complexity Low_complexity 1 31 0 670 273 97 39 chr13 17036206 17036743 -84836426 - L1ME LINE L1 -409 5761 5197 1173 284 186 46 chr13 17036751 17037900 -84835269 - L2 LINE L2 0 3313 1991 202 208 146 0 chr13 17037883 17037931 -84835238 + MIR SINE MIR 204 258 -4 * 269 313 71 0 chr13 17038094 17038193 -84834976 - L2 LINE L2 -1355 1959 1854 811 92 9 0 chr13 17038195 17038304 -84834865 - AluSg/x SINE Alu -11 298 189 1036 310 83 47 chr13 17038311 17038827 -84834342 - L2 LINE L2 -1454 1860 1326 370 265 27 7 chr13 17039547 17039694 -84833475 - L1ME LINE L1 -1541 4605 4456 331 200 300 9 chr13 17039780 17039890 -84833279 + MIR SINE MIR 88 229 -33 22 56 0 0 chr13 17040112 17040148 -84833021 + AT_rich Low_complexity Low_complexity 1 36 0 327 181 0 0 chr13 17040797 17040869 -84832300 + CT-rich Low_complexity Low_complexity 1 72 0 630 266 132 9 chr13 17043469 17043702 -84829467 - MIR SINE MIR -14 248 8 220 204 20 0 chr13 17045785 17045834 -84827335 + L2 LINE L2 3210 3259 -13 1979 133 75 20 chr13 17047185 17047530 -84825639 + THE1B LTR MaLR 1 364 0 319 146 0 0 chr13 17047867 17047915 -84825254 - L2 LINE L2 0 3313 3266 260 348 107 30 chr13 17048215 17048514 -84824655 + L2 LINE L2 2313 2634 -680 390 21 0 0 chr13 17048629 17048676 -84824493 + (TG)n Simple_repeat Simple_repeat 1 47 0 3241 164 44 82 chr13 17049640 17049972 -84823197 - L1MC3 LINE L1 -8 7777 7434 1742 127 3 96 chr13 17049972 17050189 -84822980 - AluSx SINE Alu 0 302 125 228 35 0 0 chr13 17050189 17050218 -84822951 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1742 127 3 96 chr13 17050218 17050332 -84822837 - AluSx SINE Alu -177 125 2 3241 164 44 82 chr13 17050332 17050833 -84822336 - L1MC3 LINE L1 -351 7434 6975 229 259 19 0 chr13 17050833 17050887 -84822282 + LTR64 LTR ERVK 423 477 -81 823 211 22 5 chr13 17051353 17051538 -84821631 + MER5A DNA MER1_type 2 189 0 257 309 122 8 chr13 17051708 17051831 -84821338 + LTR33 LTR ERVL 385 521 0 313 313 97 7 chr13 17052037 17052181 -84820988 - MIR SINE MIR -49 213 57 187 213 106 0 chr13 17053208 17053255 -84819914 - L2 LINE L2 -251 3062 3011 2281 146 30 19 chr13 17053255 17053626 -84819543 - THE1C LTR MaLR 0 375 1 9881 130 12 33 chr13 17053626 17055213 -84817956 - THE1C-int LTR MaLR 0 1580 27 1959 185 33 14 chr13 17055219 17055587 -84817582 - THE1C LTR MaLR 0 375 1 250 367 115 0 chr13 17055628 17055767 -84817402 - L2 LINE L2 -331 2982 2828 321 259 6 18 chr13 17058418 17058584 -84814585 + GA-rich Low_complexity Low_complexity 1 164 0 2282 84 44 3 chr13 17059254 17059551 -84813618 + L1PB1 LINE L1 5843 6151 0 30 69 0 0 chr13 17060194 17060252 -84812917 + AT_rich Low_complexity Low_complexity 1 58 0 2468 165 24 12 chr13 17061277 17061701 -84811468 - MSTB1 LTR MaLR -3 429 1 333 125 0 0 chr13 17062264 17062320 -84810849 + (TG)n Simple_repeat Simple_repeat 1 56 0 2046 173 28 30 chr13 17063310 17063868 -84809301 - MLT2A2 LTR ERVL 0 554 2 287 270 90 36 chr13 17064294 17064405 -84808764 + MIR SINE MIR 23 139 -123 577 332 76 28 chr13 17064775 17065167 -84808002 - L2 LINE L2 -317 2996 2577 260 274 98 0 chr13 17065215 17065317 -84807852 - L2 LINE L2 -352 2920 2809 229 346 0 66 chr13 17065359 17065541 -84807628 - L2 LINE L2 -803 2511 2342 * 361 275 25 25 chr13 17065540 17065660 -84807509 + MIR SINE MIR 143 262 0 1189 92 13 0 chr13 17068449 17068602 -84804567 + L1PA14 LINE L1 6003 6157 -4 183 42 0 0 chr13 17069745 17069769 -84803400 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 498 240 133 117 chr13 17070776 17071160 -84802009 - LTR33 LTR ERVL -50 471 82 219 307 0 0 chr13 17071501 17071638 -84801531 + (CA)n Simple_repeat Simple_repeat 2 138 0 180 0 0 0 chr13 17071907 17071927 -84801242 + (TGG)n Simple_repeat Simple_repeat 1 20 0 665 171 23 0 chr13 17071969 17072144 -84801025 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 617 179 11 17 chr13 17072179 17072358 -84800811 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1997 120 28 0 chr13 17072380 17072663 -84800506 - AluSg SINE Alu -19 291 1 377 225 11 34 chr13 17072792 17072881 -84800288 + MIR SINE MIR 5 91 -171 1594 55 10 30 chr13 17072999 17073200 -84799969 + MER107 DNA MER1_type 1 197 0 36 70 0 0 chr13 17073353 17073424 -84799745 + AT_rich Low_complexity Low_complexity 1 71 0 225 213 131 0 chr13 17073454 17073515 -84799654 + MIR SINE MIR 52 120 -142 666 283 58 36 chr13 17073546 17073854 -84799315 + MER102b DNA MER1_type 27 341 0 427 296 70 28 chr13 17073995 17074137 -84799032 - L2 LINE L2 0 3272 3125 29 0 0 0 chr13 17074957 17074986 -84798183 + AT_rich Low_complexity Low_complexity 1 29 0 256 314 132 16 chr13 17074991 17075112 -84798057 + MIR SINE MIR 2 136 -126 624 276 126 0 chr13 17075360 17075534 -84797635 - MIR SINE MIR -49 213 18 263 104 21 0 chr13 17075688 17075736 -84797433 + (CA)n Simple_repeat Simple_repeat 1 49 0 2404 62 0 29 chr13 17076500 17076806 -84796363 - AluY SINE Alu -12 299 3 2285 98 0 0 chr13 17076808 17077105 -84796064 - AluSx SINE Alu -15 297 1 346 270 30 0 chr13 17078845 17078945 -84794224 + MER5A DNA MER1_type 4 106 -83 2291 112 0 0 chr13 17079214 17079519 -84793650 + AluSx SINE Alu 1 305 -7 243 221 35 88 chr13 17080332 17080369 -84792800 - MIR SINE MIR -26 236 199 2188 242 25 14 chr13 17080369 17080881 -84792288 + LTR40a LTR ERVL 2 519 0 243 221 35 88 chr13 17080881 17080956 -84792213 - MIR SINE MIR -63 199 130 2364 89 3 0 chr13 17081099 17081401 -84791768 - AluY SINE Alu -8 303 1 233 245 0 0 chr13 17082842 17082895 -84790274 + L2 LINE L2 3257 3309 -4 2885 10 0 0 chr13 17083445 17083755 -84789414 + AluY SINE Alu 1 310 -1 439 243 33 59 chr13 17084357 17084427 -84788742 + MIR SINE MIR 3 73 -189 1866 174 0 10 chr13 17084427 17084725 -84788444 + AluSx SINE Alu 1 295 -17 439 243 33 59 chr13 17084725 17084806 -84788363 + MIR SINE MIR 73 150 -112 379 308 0 0 chr13 17086195 17086328 -84786841 + (TA)n Simple_repeat Simple_repeat 1 133 0 3036 76 0 109 chr13 17087484 17087706 -84785463 + L1PA7 LINE L1 5684 5826 -328 7875 36 6 0 chr13 17087706 17089125 -84784044 + L1PA5 LINE L1 4725 6148 -6 3036 76 0 109 chr13 17089125 17089389 -84783780 + L1PA7 LINE L1 5826 6117 -37 322 299 62 10 chr13 17090755 17090852 -84782317 + MIR SINE MIR 6 107 -155 675 250 13 14 chr13 17090871 17091037 -84782132 + MLT1J2 LTR MaLR 24 218 -270 393 284 134 35 chr13 17091163 17091364 -84781805 + MLT1J2 LTR MaLR 227 447 -3 25 0 0 0 chr13 17091479 17091504 -84781665 + AT_rich Low_complexity Low_complexity 1 25 0 198 71 0 0 chr13 17091519 17091547 -84781622 + (TC)n Simple_repeat Simple_repeat 1 28 0 306 261 59 34 chr13 17091671 17091790 -84781379 + MIR SINE MIR 71 192 -70 2284 200 37 24 chr13 17092653 17093192 -84779977 + L1MD3 LINE L1 7450 7995 0 63 67 0 0 chr13 17093223 17093342 -84779827 + AT_rich Low_complexity Low_complexity 1 119 0 322 295 92 70 chr13 17094381 17094567 -84778602 + HAL1b LINE L1 59 239 -1109 1887 118 0 11 chr13 17094567 17094838 -84778331 + AluSx SINE Alu 40 307 -5 322 295 92 70 chr13 17094838 17095288 -84777881 + HAL1b LINE L1 239 715 -633 1989 140 27 0 chr13 17095288 17095581 -84777588 + AluSx SINE Alu 1 301 -11 322 295 92 70 chr13 17095581 17095669 -84777500 + HAL1b LINE L1 715 800 -548 1304 233 107 49 chr13 17095858 17096561 -84776608 + L1MC5 LINE L1 6529 7281 -680 538 250 47 8 chr13 17096592 17096720 -84776449 + MLT1D LTR MaLR 1 133 -372 295 217 72 0 chr13 17096720 17096803 -84776366 - L2 LINE L2 -2407 907 819 423 218 0 0 chr13 17096805 17096892 -84776277 + MER105 DNA DNA 2 88 -116 197 331 68 53 chr13 17097521 17097654 -84775515 - L2 LINE L2 -15 3257 3123 250 270 220 0 chr13 17098823 17098923 -84774246 - MIR SINE MIR -85 177 56 27 0 0 0 chr13 17099064 17099091 -84774078 + AT_rich Low_complexity Low_complexity 1 27 0 606 235 99 38 chr13 17099772 17099985 -84773184 + MIR SINE MIR 35 260 -2 293 335 31 43 chr13 17100493 17100654 -84772515 - L2 LINE L2 -9 3263 3105 1754 162 4 0 chr13 17100876 17101147 -84772022 + AluSx SINE Alu 6 277 -35 247 276 143 51 chr13 17101299 17101397 -84771772 + MIR SINE MIR 16 122 -86 210 143 0 0 chr13 17102969 17103004 -84770165 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 320 372 54 14 chr13 17103243 17103391 -84769778 - L2 LINE L2 -6 3266 3113 223 396 81 0 chr13 17103493 17103642 -84769527 - L2 LINE L2 -218 3054 2894 2112 109 3 3 chr13 17104234 17104517 -84768652 + AluSx SINE Alu 1 283 -29 285 0 0 27 chr13 17104517 17104554 -84768615 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 362 252 76 34 chr13 17105096 17105215 -84767954 - MIR SINE MIR -72 190 67 388 289 103 33 chr13 17106978 17107220 -84765949 + LTR33 LTR ERVL 178 436 -85 386 19 0 19 chr13 17107220 17107272 -84765897 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7480 34 0 0 chr13 17107272 17108204 -84764965 - L1PA4 LINE L1 -11 6144 5213 6920 35 6 0 chr13 17108204 17109100 -84764069 + L1P LINE L1 2788 3688 -2458 339 198 12 12 chr13 17109100 17109186 -84763983 + LTR33 LTR ERVL 421 506 -15 235 303 40 10 chr13 17111051 17111150 -84762019 - MIR3 SINE MIR -24 184 83 277 266 14 173 chr13 17111187 17111331 -84761838 + MER5A DNA MER1_type 9 110 -79 2269 102 0 0 chr13 17111331 17111625 -84761544 - AluSg SINE Alu -16 294 1 277 266 14 173 chr13 17111625 17111694 -84761475 + MER5A DNA MER1_type 110 188 -1 1679 192 0 10 chr13 17112212 17112504 -84760665 - AluJo SINE Alu -13 299 11 1509 246 79 78 chr13 17112560 17113273 -84759896 - MER21B LTR ERV1 -125 738 22 351 18 54 0 chr13 17113273 17113329 -84759840 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 222 396 88 11 chr13 17113754 17113845 -84759324 + L2 LINE L2 3147 3244 -28 2452 75 0 3 chr13 17113855 17114160 -84759009 - AluY SINE Alu -7 304 1 24 0 0 0 chr13 17114365 17114389 -84758780 + AT_rich Low_complexity Low_complexity 1 24 0 369 319 28 14 chr13 17114925 17115069 -84758100 - MIR SINE MIR -5 257 112 31 0 0 0 chr13 17115415 17115446 -84757723 + AT_rich Low_complexity Low_complexity 1 31 0 355 246 73 48 chr13 17115474 17115722 -84757447 + L1ME LINE L1 2158 2411 -3985 3109 261 27 37 chr13 17115740 17117712 -84755457 + L1MA6 LINE L1 16 1951 -4098 3983 207 86 7 chr13 17117722 17118931 -84754238 + L1MA6 LINE L1 2440 3743 -2585 684 185 0 0 chr13 17118966 17119085 -84754084 + AluSg/x SINE Alu 183 301 -9 4874 26 2 0 chr13 17119268 17119838 -84753331 - L1PA4 LINE L1 -3 6152 5582 6563 166 37 35 chr13 17119840 17121332 -84751837 + L1MA6 LINE L1 3735 5228 -1100 3979 169 91 18 chr13 17121322 17122285 -84750884 + L1MA6 LINE L1 5449 6482 0 * 1991 276 65 45 chr13 17122383 17123864 -84749305 + L1ME LINE L1 2495 4004 -2211 2336 89 3 6 chr13 17123887 17124201 -84748968 - AluSp SINE Alu 0 313 1 25 0 0 0 chr13 17124257 17124282 -84748887 + AT_rich Low_complexity Low_complexity 1 25 0 239 299 6 19 chr13 17124415 17124572 -84748597 + L1ME LINE L1 4181 4335 -1880 229 100 25 0 chr13 17124574 17124614 -84748555 - MADE1 DNA Mariner -5 75 35 1259 258 80 6 chr13 17124745 17125246 -84747923 + L1ME LINE L1 4875 5412 -803 305 300 11 0 chr13 17125273 17125363 -84747806 - L1MC4 LINE L1 -1339 6703 6613 212 158 0 0 chr13 17125380 17125418 -84747751 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 873 269 26 16 chr13 17125427 17125735 -84747434 + L1ME LINE L1 5464 5774 -457 1376 315 71 41 chr13 17125736 17126784 -84746385 - HERV16 LTR ERVL -1904 3860 2711 1308 317 26 16 chr13 17126850 17127467 -84745702 - HERV16 LTR ERVL -2588 2408 1914 2011 164 45 32 chr13 17127520 17128027 -84745142 + MLT2A2 LTR ERVL 1 520 0 1912 310 71 13 chr13 17128027 17129165 -84744004 - HERV16 LTR ERVL -3124 1872 604 425 355 47 14 chr13 17129424 17129720 -84743449 - HERV16 LTR ERVL -4676 320 15 752 316 33 28 chr13 17129722 17130117 -84743052 - LTR16B LTR ERVL -2 462 66 1866 136 23 0 chr13 17132831 17133133 -84740036 - MER7A DNA MER2_type 0 346 40 526 286 79 31 chr13 17134606 17134833 -84738336 + MIR SINE MIR 20 257 -5 321 68 0 0 chr13 17136081 17136125 -84737044 + (TG)n Simple_repeat Simple_repeat 1 44 0 2132 138 0 0 chr13 17137271 17137582 -84735587 + AluSx SINE Alu 1 311 -1 221 196 18 0 chr13 17137610 17137666 -84735503 + (TA)n Simple_repeat Simple_repeat 1 57 0 1978 205 94 14 chr13 17137872 17138374 -84734795 - MLT1F LTR MaLR 0 542 1 1448 143 9 5 chr13 17141251 17141474 -84731695 + AluSx SINE Alu 1 224 -88 180 0 0 0 chr13 17141485 17141505 -84731664 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1090 207 132 35 chr13 17141510 17141911 -84731258 - MLT1C LTR MaLR -27 440 1 995 200 45 76 chr13 17142213 17142737 -84730432 + MER34B LTR ERV1 4 585 0 287 273 172 50 chr13 17143456 17143654 -84729515 + MIR SINE MIR 3 224 -38 182 273 55 82 chr13 17143708 17143818 -84729351 - MIR SINE MIR -147 115 9 209 327 77 39 chr13 17144154 17144258 -84728911 - L2 LINE L2 -32 3240 3133 778 213 24 0 chr13 17144579 17144743 -84728426 - MER5A DNA MER1_type -5 184 17 1767 130 70 12 chr13 17144743 17145073 -84728096 - THE1C LTR MaLR 0 375 27 1315 187 101 1 chr13 17147600 17147951 -84725218 - MLT2C2 LTR ERVL 0 397 3 2070 113 7 29 chr13 17147978 17148288 -84724881 + AluSq SINE Alu 11 313 0 21 36 0 0 chr13 17148489 17148517 -84724652 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 17148561 17148587 -84724582 + AT_rich Low_complexity Low_complexity 1 26 0 627 278 46 85 chr13 17148602 17149167 -84724002 + L1ME LINE L1 13 555 -5515 1793 215 61 8 chr13 17149641 17150115 -84723054 - Charlie1b DNA MER1_type -1 522 24 560 329 82 16 chr13 17150265 17150581 -84722588 - ERVL LTR ERVL -1914 3850 3514 438 324 42 14 chr13 17150664 17150880 -84722289 - ERVL LTR ERVL -2375 3389 3168 312 333 33 18 chr13 17150921 17151134 -84722035 - ERVL LTR ERVL -1981 3015 2788 362 264 47 47 chr13 17151141 17151289 -84721880 - MLT1F LTR MaLR -7 535 388 238 329 27 67 chr13 17151419 17151492 -84721677 - MLT1F LTR MaLR -362 228 162 2854 82 0 6 chr13 17151492 17151858 -84721311 + THE1B LTR MaLR 1 364 0 238 329 27 67 chr13 17151858 17151933 -84721236 - MLT1F LTR MaLR -428 162 86 410 325 21 16 chr13 17152424 17152618 -84720551 - ERVL LTR ERVL -3427 2337 2143 440 207 33 50 chr13 17152675 17152796 -84720373 - MLT1F LTR MaLR -8 534 416 232 284 23 0 chr13 17154371 17154459 -84718710 + (TA)n Simple_repeat Simple_repeat 2 91 0 736 246 77 40 chr13 17155923 17156171 -84716998 - MIR SINE MIR 0 262 6 38 22 0 0 chr13 17156554 17156599 -84716570 + AT_rich Low_complexity Low_complexity 1 45 0 216 0 0 0 chr13 17159246 17159270 -84713899 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1248 237 58 40 chr13 17159492 17159939 -84713230 - MLT1C LTR MaLR -7 460 6 2725 217 103 23 chr13 17160106 17160147 -84713022 - MER21B LTR ERV1 -15 848 812 2271 82 11 61 chr13 17160147 17160524 -84712645 - L1PB2 LINE L1 0 6151 5794 2725 217 103 23 chr13 17160524 17161252 -84711917 - MER21B LTR ERV1 -51 812 18 410 224 0 0 chr13 17161276 17161352 -84711817 - MER21B LTR ERV1 -776 87 12 527 321 75 25 chr13 17161548 17161828 -84711341 + HAL1 LINE L1 1134 1427 -1080 354 104 15 0 chr13 17161834 17161885 -84711284 + L1PA4 LINE L1 5983 6037 -118 428 105 0 105 chr13 17161885 17161980 -84711189 + L1PA10 LINE L1 6084 6168 0 354 104 15 0 chr13 17161980 17161995 -84711174 + L1PA4 LINE L1 6037 6050 -105 1175 234 127 15 chr13 17162122 17162643 -84710526 + MER114 LTR ERV 70 648 0 22 56 0 0 chr13 17163082 17163118 -84710051 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr13 17163136 17163159 -84710010 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 1724 195 0 16 chr13 17163159 17163467 -84709702 + AluJo SINE Alu 4 306 -6 1803 166 43 10 chr13 17167407 17167772 -84705397 + AluSx SINE Alu 1 375 0 327 236 22 22 chr13 17168594 17168683 -84704486 - MIR SINE MIR -117 145 57 508 315 76 0 chr13 17169607 17169791 -84703378 - MIR SINE MIR -8 254 57 847 255 172 45 chr13 17170751 17171147 -84702022 - L2 LINE L2 0 3313 2868 523 280 46 6 chr13 17171824 17171999 -84701170 + MIR SINE MIR 81 262 0 195 352 130 9 chr13 17172094 17172202 -84700967 - L2 LINE L2 -5 3267 3147 303 294 39 0 chr13 17172771 17172873 -84700296 - MLT1H LTR MaLR 0 549 444 384 240 157 30 chr13 17173574 17173761 -84699408 - MIR SINE MIR 0 262 59 2128 117 3 23 chr13 17174633 17174942 -84698227 + AluSg SINE Alu 1 303 -7 2225 76 10 10 chr13 17175803 17176094 -84697075 - AluY SINE Alu -20 291 1 182 233 0 67 chr13 17176138 17176198 -84696971 + L3 LINE CR1 1377 1432 -145 584 188 8 0 chr13 17176383 17176511 -84696658 + L1MB3 LINE L1 4992 5120 -1026 1041 144 26 0 chr13 17176532 17176726 -84696443 + L1MB3 LINE L1 5949 6147 -36 4415 177 14 13 chr13 17176781 17177023 -84696146 + L1MB3 LINE L1 5173 5413 -770 1856 115 118 38 chr13 17177023 17177370 -84695799 + THE1C LTR MaLR 1 375 0 4415 177 14 13 chr13 17177370 17178137 -84695032 + L1MB3 LINE L1 5413 6183 0 2122 152 0 0 chr13 17178202 17178505 -84694664 + AluSx SINE Alu 1 303 -9 1401 220 90 48 chr13 17178911 17179449 -84693720 + MLT1F1 LTR MaLR 1 567 0 727 263 157 27 chr13 17181589 17181920 -84691249 + L2 LINE L2 2940 3313 0 298 252 79 24 chr13 17182757 17182884 -84690285 + LTR16A1 LTR ERVL 321 454 -3 241 233 11 22 chr13 17182917 17183007 -84690162 + A-rich Low_complexity Low_complexity 3 91 0 447 251 57 43 chr13 17183323 17183534 -84689635 - L1MC/D LINE L1 -1992 5816 5603 280 248 168 0 chr13 17183542 17183643 -84689526 + MER69A DNA AcHobo 8 125 -52 310 403 29 21 chr13 17183736 17183974 -84689195 - L1MC/D LINE L1 -526 5595 5356 880 249 169 26 chr13 17184042 17184613 -84688556 - L2 LINE L2 -1 3312 2662 35530 35 25 1 chr13 17185523 17190995 -84682174 - L1HS LINE L1 0 6155 551 1774 191 7 3 chr13 17191846 17192283 -84680886 + AluSx SINE Alu 1 438 0 1772 185 60 32 chr13 17194288 17194822 -84678347 + MLT2A2 LTR ERVL 1 554 0 386 167 115 21 chr13 17195166 17195262 -84677907 - L2 LINE L2 0 3272 3168 1659 166 10 28 chr13 17196644 17196934 -84676235 + AluJb SINE Alu 16 300 -12 467 318 45 0 chr13 17197177 17197309 -84675860 - L2 LINE L2 0 3313 3176 404 256 103 0 chr13 17197325 17197442 -84675727 - MIR SINE MIR -45 217 89 251 299 0 15 chr13 17198823 17198890 -84674279 + MIR SINE MIR 32 97 -111 721 274 59 35 chr13 17199094 17199433 -84673736 + MLT1I LTR MaLR 63 409 0 210 322 101 20 chr13 17199861 17200010 -84673159 - L2 LINE L2 -38 3275 3115 1685 150 49 36 chr13 17200571 17200877 -84672292 + AluSg SINE Alu 1 310 0 1459 184 43 15 chr13 17201326 17201652 -84671517 - MER2 DNA MER2_type -9 336 2 2183 86 0 67 chr13 17201825 17202140 -84671029 - AluY SINE Alu -17 294 1 226 337 20 0 chr13 17202157 17202255 -84670914 + HAL1b LINE L1 798 897 -451 213 360 20 7 chr13 17202739 17202886 -84670283 + CT-rich Low_complexity Low_complexity 5 153 0 * 476 228 0 78 chr13 17202875 17203068 -84670101 + C-rich Low_complexity Low_complexity 3 180 0 2220 113 3 0 chr13 17204173 17204466 -84668703 + AluSx SINE Alu 1 294 -18 398 248 73 29 chr13 17204470 17204607 -84668562 - MIR SINE MIR -1 261 119 331 361 49 0 chr13 17204707 17204829 -84668340 - L2 LINE L2 -1 3271 3144 3428 206 6 57 chr13 17205185 17205578 -84667591 - L1MB5 LINE L1 -14 6160 5749 1985 112 0 11 chr13 17205578 17205847 -84667322 - AluSx SINE Alu -30 282 17 3428 206 6 57 chr13 17205847 17206337 -84666832 - L1MB5 LINE L1 -425 5749 5322 432 200 24 0 chr13 17207094 17207219 -84665950 + (TA)n Simple_repeat Simple_repeat 2 129 0 329 297 27 70 chr13 17208464 17208649 -84664520 + L1ME4a LINE L1 5295 5471 -2337 387 270 114 44 chr13 17208681 17208824 -84664345 + L1ME4a LINE L1 5534 5665 -456 2093 154 0 0 chr13 17208824 17209135 -84664034 + AluSx SINE Alu 1 311 -1 387 270 114 44 chr13 17209135 17209358 -84663811 + L1ME4a LINE L1 5665 5926 -195 22 0 0 0 chr13 17209408 17209430 -84663739 + AT_rich Low_complexity Low_complexity 1 22 0 547 181 19 0 chr13 17210301 17210406 -84662763 + FLAM_C SINE Alu 1 107 -36 15326 67 6 2 chr13 17210406 17212588 -84660581 + L1PA5 LINE L1 1398 3587 -2559 13841 55 14 1 chr13 17212714 17215292 -84657877 + L1PA5 LINE L1 3545 6153 -1 2070 133 10 10 chr13 17215304 17215606 -84657563 + AluSq SINE Alu 1 302 -11 532 163 16 101 chr13 17215813 17215942 -84657227 + FRAM SINE Alu 1 117 -59 189 121 0 0 chr13 17216336 17216369 -84656800 + (GA)n Simple_repeat Simple_repeat 2 34 0 297 276 67 0 chr13 17218744 17218849 -84654320 - MIR3 SINE MIR -4 204 93 3910 153 26 7 chr13 17219681 17219919 -84653250 - Tigger1 DNA MER2_type 0 2418 2186 180 0 0 0 chr13 17219919 17219939 -84653230 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3910 153 26 7 chr13 17219939 17220015 -84653154 - Tigger1 DNA MER2_type -232 2186 2113 2452 77 0 13 chr13 17220015 17220328 -84652841 - AluY SINE Alu -2 309 1 3910 153 26 7 chr13 17220328 17220731 -84652438 - Tigger1 DNA MER2_type -305 2113 1686 5416 162 30 2 chr13 17220734 17221711 -84651458 - Tigger1 DNA MER2_type -1410 1008 5 479 266 31 8 chr13 17221741 17221869 -84651300 + L2 LINE L2 3134 3264 -8 213 94 0 0 chr13 17221896 17221928 -84651241 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 328 263 32 11 chr13 17223596 17223691 -84649478 + L2 LINE L2 2685 2781 -533 1118 297 96 8 chr13 17223781 17224265 -84648904 + L2 LINE L2 2782 3313 0 1970 121 65 39 chr13 17224288 17224643 -84648526 - THE1B LTR MaLR 0 364 1 242 347 31 20 chr13 17225186 17225284 -84647885 - MER91A DNA MER1_type 0 196 98 248 342 0 0 chr13 17225880 17225959 -84647210 - MIR SINE MIR -16 246 168 219 333 21 21 chr13 17226508 17226601 -84646568 - L3 LINE CR1 -1415 162 70 437 195 0 0 chr13 17226686 17226768 -84646401 - AluJ/FRAM SINE Alu -5 307 226 * 758 174 194 7 chr13 17226764 17226919 -84646250 - AluSg SINE Alu -126 184 1 327 308 42 17 chr13 17227057 17227177 -84645992 - L2 LINE L2 -1 3312 3190 316 244 44 22 chr13 17227764 17227854 -84645315 - L2 LINE L2 0 3313 3222 361 286 8 17 chr13 17230539 17230658 -84642511 - L2 LINE L2 -5 3308 3191 371 187 11 11 chr13 17230772 17230863 -84642306 - L1PA16 LINE L1 0 6166 6076 33 0 0 0 chr13 17230946 17230979 -84642190 + AT_rich Low_complexity Low_complexity 1 33 0 1483 148 29 0 chr13 17231361 17231638 -84641531 + L1MA8 LINE L1 6004 6288 -3 217 354 63 25 chr13 17232005 17232084 -84641085 + L3b LINE CR1 1490 1571 -12 868 236 85 69 chr13 17233049 17233413 -84639756 - MLT1A2 LTR MaLR -4 370 1 314 303 9 0 chr13 17234038 17234147 -84639022 - MER103 DNA DNA -49 117 8 293 241 65 15 chr13 17234168 17234308 -84638861 + MLT1J2 LTR MaLR 1 146 -263 456 212 51 6 chr13 17234393 17234560 -84638609 + MLT1J2 LTR MaLR 274 405 -4 756 225 70 20 chr13 17234658 17234858 -84638311 - MER58A DNA MER1_type -13 211 2 984 232 82 0 chr13 17236725 17236992 -84636177 - MER33 DNA MER1_type 0 324 36 404 227 34 0 chr13 17237052 17237140 -84636029 - MIR SINE MIR -90 172 82 3783 101 2 5 chr13 17237185 17237323 -84635846 - L1PA12 LINE L1 -2 6166 6029 2584 91 11 0 chr13 17237323 17237674 -84635495 + THE1A LTR MaLR 1 355 0 11650 88 15 2 chr13 17237674 17239233 -84633936 + THE1A-int LTR MaLR 1 1580 0 2850 68 3 0 chr13 17239235 17239587 -84633582 + THE1A LTR MaLR 3 355 0 3783 101 2 5 chr13 17239587 17239997 -84633172 - L1PA12 LINE L1 -139 6029 5616 337 306 198 51 chr13 17240122 17240495 -84632674 - L3 LINE CR1 -363 1214 787 2039 123 3 27 chr13 17240660 17240960 -84632209 + AluSx SINE Alu 1 293 -19 638 314 96 17 chr13 17241010 17241363 -84631806 + MLT1I LTR MaLR 3 383 -26 1560 171 62 14 chr13 17243605 17243880 -84629289 - AluJo SINE Alu -20 292 5 384 276 0 35 chr13 17245126 17245242 -84627927 + MER81 DNA DNA 1 112 -2 197 319 15 74 chr13 17245245 17245380 -84627789 + MIR SINE MIR 14 140 -122 452 281 8 0 chr13 17245553 17245681 -84627488 + MER94 DNA DNA 1 129 -5 2219 99 0 23 chr13 17245940 17246242 -84626927 + AluY SINE Alu 1 295 -16 394 53 0 18 chr13 17246373 17246430 -84626739 - MADE1 DNA Mariner 0 80 25 2032 141 0 0 chr13 17246432 17246716 -84626453 + AluSx SINE Alu 3 286 -26 307 140 0 0 chr13 17246816 17246873 -84626296 + Alu SINE Alu 244 300 0 2261 110 0 0 chr13 17247056 17247356 -84625813 - AluSg SINE Alu -10 300 1 513 44 0 0 chr13 17248728 17248796 -84624373 + (TCTCCC)n Simple_repeat Simple_repeat 5 72 0 3735 75 18 77 chr13 17249356 17250084 -84623085 + SVA Other Other 439 1123 -263 595 311 19 19 chr13 17250849 17251058 -84622111 - MIR SINE MIR -41 221 13 1091 127 0 0 chr13 17251426 17251599 -84621570 - L1MA6 LINE L1 0 6300 6128 485 161 27 45 chr13 17251599 17251711 -84621458 + Tigger3(Golem) DNA MER2_type 2 111 -2918 * 3417 145 61 29 chr13 17251708 17251788 -84621381 + Tigger3(Golem) DNA MER2_type 2284 2360 -668 2256 110 0 0 chr13 17251788 17252087 -84621082 + AluSx SINE Alu 1 299 -13 3417 145 61 29 chr13 17252087 17252728 -84620441 + Tigger3(Golem) DNA MER2_type 2360 3028 0 4381 166 5 14 chr13 17252728 17253983 -84619186 - L1MA6 LINE L1 -170 6130 4885 249 186 0 0 chr13 17255578 17255621 -84617548 + MLT1D LTR MaLR 1 43 -462 2176 81 0 0 chr13 17255622 17255883 -84617286 + AluSg SINE Alu 1 261 -49 947 158 0 23 chr13 17255915 17256092 -84617077 + MLT1D LTR MaLR 333 505 0 269 282 120 43 chr13 17257481 17257598 -84615571 + MIR SINE MIR 25 150 -112 474 241 97 7 chr13 17258532 17258677 -84614492 + LTR16A LTR ERVL 293 450 0 776 320 61 28 chr13 17258689 17259148 -84614021 - MARNA DNA Mariner -93 493 20 223 330 68 0 chr13 17259340 17259428 -84613741 + L2 LINE L2 3171 3264 -8 189 0 0 0 chr13 17259494 17259515 -84613654 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2702 165 19 2 chr13 17260025 17260444 -84612725 - MSTB LTR MaLR 0 426 1 4565 37 6 0 chr13 17260887 17261406 -84611763 + L1PA4 LINE L1 5634 6155 0 262 357 62 40 chr13 17262408 17262632 -84610537 - MIR SINE MIR -14 248 20 505 281 107 29 chr13 17262949 17263249 -84609920 + L1ME4a LINE L1 5309 5631 -490 318 319 42 25 chr13 17263250 17263491 -84609678 + L1ME4a LINE L1 5682 5926 -195 415 365 115 21 chr13 17263919 17264302 -84608867 - L2 LINE L2 -16 3256 2838 254 342 49 49 chr13 17264538 17264781 -84608388 - L2 LINE L2 -479 2835 2593 216 372 102 14 chr13 17265009 17265380 -84607789 - L2 LINE L2 -1003 2311 1908 188 271 94 0 chr13 17269019 17269104 -84604065 - MIR SINE MIR -8 254 162 1282 234 58 58 chr13 17270092 17270541 -84602628 + MLT1D LTR MaLR 5 453 -52 206 121 0 0 chr13 17271948 17271981 -84601188 + (A)n Simple_repeat Simple_repeat 1 33 0 8727 162 15 12 chr13 17271983 17274485 -84598684 + L1PB1 LINE L1 3644 6149 -2 5312 156 16 49 chr13 17274783 17275835 -84597334 + L1PB4 LINE L1 4782 5867 -289 327 49 0 0 chr13 17275835 17275876 -84597293 + (CA)n Simple_repeat Simple_repeat 2 42 0 2148 221 6 30 chr13 17275876 17276343 -84596826 + LTR22A LTR ERVK 3 458 0 5312 156 16 49 chr13 17276343 17276696 -84596473 + L1PB4 LINE L1 5865 6145 -11 6823 129 19 13 chr13 17276872 17278481 -84594688 + L1MA2 LINE L1 4677 6297 -7 2424 70 3 0 chr13 17278481 17278779 -84594390 - AluY SINE Alu -12 299 1 26 30 0 0 chr13 17278779 17278812 -84594357 + AT_rich Low_complexity Low_complexity 1 33 0 452 231 163 7 chr13 17281458 17281605 -84591564 - MIR SINE MIR -14 248 79 216 67 0 0 chr13 17281652 17281682 -84591487 + (TC)n Simple_repeat Simple_repeat 1 30 0 1098 178 20 15 chr13 17281698 17281895 -84591274 + MER3 DNA MER1_type 2 199 -10 273 239 0 14 chr13 17281963 17282034 -84591135 - MIR SINE MIR -71 191 122 1263 152 17 46 chr13 17282046 17282283 -84590886 + MSTB1 LTR MaLR 1 230 -202 1086 145 17 0 chr13 17283145 17283317 -84589852 + MSTB1 LTR MaLR 256 430 -2 316 260 94 10 chr13 17283458 17283554 -84589615 + L2 LINE L2 3210 3313 0 281 351 264 5 chr13 17283582 17283790 -84589379 + L3b LINE CR1 1269 1530 -53 310 279 90 0 chr13 17284569 17284691 -84588478 - LTR33A LTR ERVL 0 523 391 500 306 77 25 chr13 17284793 17285028 -84588141 - LTR33A LTR ERVL -276 247 1 190 246 115 0 chr13 17285167 17285228 -84587941 + L2 LINE L2 3205 3272 0 1678 167 0 46 chr13 17285416 17285739 -84587430 + AluJo SINE Alu 1 308 -4 2207 99 6 37 chr13 17286077 17286399 -84586770 + AluSx SINE Alu 1 312 0 254 264 0 0 chr13 17286705 17286777 -84586392 + L1MC/D LINE L1 5680 5751 -2057 276 354 10 10 chr13 17287448 17287544 -84585625 + L2 LINE L2 3177 3272 0 2325 170 39 30 chr13 17287732 17288192 -84584977 + MLT1C LTR MaLR 1 464 -3 247 322 67 11 chr13 17288755 17288845 -84584324 - L2 LINE L2 -25 3247 3153 29 78 0 0 chr13 17290858 17290922 -84582247 + AT_rich Low_complexity Low_complexity 1 64 0 207 0 0 0 chr13 17291219 17291242 -84581927 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 212 259 58 72 chr13 17291248 17291387 -84581782 - L2 LINE L2 -19 3294 3158 21 36 0 0 chr13 17292023 17292051 -84581118 + AT_rich Low_complexity Low_complexity 1 28 0 219 325 214 8 chr13 17292950 17293067 -84580102 + L2 LINE L2 3124 3264 -8 2330 96 0 3 chr13 17293947 17294248 -84578921 + AluSg SINE Alu 2 301 -9 1353 53 12 16 chr13 17294302 17294551 -84578618 + (GAAA)n Simple_repeat Simple_repeat 4 249 0 3160 222 25 5 chr13 17294926 17295565 -84577604 + MER82 DNA MER2_type 1 652 -1 25 0 0 0 chr13 17296195 17296220 -84576949 + AT_rich Low_complexity Low_complexity 1 25 0 204 247 156 0 chr13 17297811 17297888 -84575281 + L2 LINE L2 2305 2393 -921 278 138 17 0 chr13 17298035 17298093 -84575076 + GA-rich Low_complexity Low_complexity 4 62 0 216 277 24 72 chr13 17298406 17298489 -84574680 + MIR SINE MIR 109 187 -75 1219 258 105 46 chr13 17298664 17299400 -84573769 + L2 LINE L2 2527 3313 0 1687 173 23 13 chr13 17299850 17300151 -84573018 - AluJo SINE Alu -8 304 1 22 56 0 0 chr13 17300219 17300255 -84572914 + AT_rich Low_complexity Low_complexity 1 36 0 303 229 24 0 chr13 17300801 17300884 -84572285 + L1ME LINE L1 5670 5754 -408 595 304 23 37 chr13 17302020 17302234 -84570935 + MIR SINE MIR 52 262 0 211 229 0 0 chr13 17302234 17302282 -84570887 + (TTA)n Simple_repeat Simple_repeat 2 49 0 339 273 100 0 chr13 17302486 17302596 -84570573 - MIR SINE MIR -1 261 141 2531 123 83 5 chr13 17302732 17303129 -84570040 + MSTA LTR MaLR 1 428 0 710 148 0 9 chr13 17303659 17303767 -84569402 + AluSq/x SINE Alu 2 108 -205 446 313 79 0 chr13 17304269 17304478 -84568691 + L1ME LINE L1 5592 5818 -303 195 227 0 0 chr13 17304594 17304638 -84568531 + L2 LINE L2 3021 3064 -208 190 222 62 74 chr13 17304781 17304862 -84568307 + MIR SINE MIR 183 262 0 1966 134 13 19 chr13 17305162 17305476 -84567693 + AluSx SINE Alu 1 312 0 1593 234 103 39 chr13 17307366 17307850 -84565319 - MLT1F LTR MaLR -19 523 9 1225 199 42 94 chr13 17307943 17308289 -84564880 + MER39 LTR ERV1 68 589 -118 2051 119 25 0 chr13 17308289 17308575 -84564594 + AluSp SINE Alu 1 293 -20 1225 199 42 94 chr13 17308575 17308651 -84564518 + MER39 LTR ERV1 589 667 -40 1419 196 122 9 chr13 17308763 17308910 -84564259 + MLT1A2 LTR MaLR 1 130 -244 252 0 0 0 chr13 17308910 17308938 -84564231 + (TC)n Simple_repeat Simple_repeat 1 28 0 1419 196 122 9 chr13 17308938 17309126 -84564043 + MLT1A2 LTR MaLR 130 374 0 207 264 0 19 chr13 17309387 17309440 -84563729 + GA-rich Low_complexity Low_complexity 128 179 0 2468 201 52 89 chr13 17310191 17311075 -84562094 + MER69 DNA AcHobo 1451 2287 -239 2144 104 7 20 chr13 17311075 17311374 -84561795 - AluSg SINE Alu -15 295 1 2468 201 52 89 chr13 17311374 17311606 -84561563 + MER69 DNA AcHobo 2287 2526 0 230 255 176 0 chr13 17311642 17311744 -84561425 - L2 LINE L2 -1262 2052 1933 238 0 0 0 chr13 17311776 17311804 -84561365 + THE1C LTR MaLR 1 28 -347 320 296 18 11 chr13 17313932 17314069 -84559100 - MLT1H1 LTR MaLR -2 565 429 710 291 54 22 chr13 17314365 17314970 -84558199 - L1ME LINE L1 -415 5681 5056 572 263 78 61 chr13 17315021 17315681 -84557488 - L1ME LINE L1 -4748 1513 807 189 368 23 0 chr13 17316601 17316688 -84556481 - L2 LINE L2 -962 2352 2264 423 183 0 0 chr13 17316965 17317047 -84556122 + (TG)n Simple_repeat Simple_repeat 1 82 0 345 275 183 0 chr13 17317237 17317368 -84555801 - MIR3 SINE MIR -12 196 42 240 333 36 29 chr13 17318057 17318195 -84554974 + MIR3 SINE MIR 7 145 -63 1455 214 43 6 chr13 17318205 17318556 -84554613 + MLT1B LTR MaLR 8 371 -19 24 0 0 0 chr13 17319683 17319707 -84553462 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 17320679 17320702 -84552467 + AT_rich Low_complexity Low_complexity 1 23 0 4336 82 2 36 chr13 17320706 17321349 -84551820 - L1PB1 LINE L1 -6 6145 5525 406 306 132 4 chr13 17321821 17322056 -84551113 - L1ME LINE L1 -299 5822 5558 860 268 121 14 chr13 17322625 17322980 -84550189 - LTR16C LTR ERVL 0 491 99 352 287 33 8 chr13 17325357 17325479 -84547690 + L1ME LINE L1 5588 5712 -409 232 178 100 56 chr13 17325997 17326087 -84547082 - Charlie4 DNA MER1_type -587 1374 1281 3618 111 7 16 chr13 17326391 17326875 -84546294 + MER41A LTR ERV1 3 483 -71 2257 102 0 3 chr13 17326875 17327180 -84545989 - AluSq SINE Alu -9 304 1 3618 111 7 16 chr13 17327180 17327252 -84545917 + MER41A LTR ERV1 483 554 0 2132 123 0 49 chr13 17327719 17328045 -84545124 - AluSg SINE Alu 0 310 1 204 125 0 0 chr13 17329675 17329707 -84543462 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2004 212 114 19 chr13 17330399 17330574 -84542595 + L1MC4a LINE L1 7166 7323 -485 1723 115 17 0 chr13 17330574 17330836 -84542333 + AluSx SINE Alu 47 312 0 2004 212 114 19 chr13 17330836 17331244 -84541925 + L1MC4a LINE L1 7323 7806 -2 281 227 176 42 chr13 17333543 17333662 -84539507 - MIR3 SINE MIR -64 144 10 4210 80 2 0 chr13 17333828 17334381 -84538788 - MER41A LTR ERV1 0 554 1 1988 147 24 37 chr13 17334918 17335298 -84537871 - THE1C LTR MaLR 0 375 1 363 179 60 40 chr13 17335756 17335977 -84537192 - MER34B LTR ERV1 -5 537 355 2839 122 7 91 chr13 17336140 17336756 -84536413 + MER4B LTR ERV1 1 564 -46 368 169 22 45 chr13 17336890 17336979 -84536190 - MER34C LTR ERV1 -459 126 40 3425 169 49 25 chr13 17337180 17337890 -84535279 + LTR8A LTR ERV1 1 727 0 311 350 10 0 chr13 17338739 17338836 -84534333 + MIR3 SINE MIR 110 207 -1 234 257 29 100 chr13 17340090 17340230 -84532939 - L2 LINE L2 -202 3070 2941 304 333 79 8 chr13 17340784 17340910 -84532259 - L2 LINE L2 -196 3076 2942 628 225 7 20 chr13 17340939 17341090 -84532079 + MER3 DNA MER1_type 5 153 -56 2570 189 13 25 chr13 17341094 17341651 -84531518 - MER89 LTR ERV1 0 559 10 182 257 156 18 chr13 17343024 17343133 -84530036 + L2 LINE L2 3186 3309 -4 23 0 0 0 chr13 17343136 17343159 -84530010 + AT_rich Low_complexity Low_complexity 1 23 0 214 376 9 46 chr13 17343218 17343327 -84529842 - L2 LINE L2 0 3272 3168 1107 160 0 0 chr13 17343481 17343650 -84529519 + AluSg/x SINE Alu 134 302 -10 288 0 0 0 chr13 17346100 17346132 -84527037 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 426 20 0 0 chr13 17346131 17346182 -84526987 + (TG)n Simple_repeat Simple_repeat 2 52 0 546 223 8 0 chr13 17347852 17347973 -84525196 - MER94 DNA DNA -12 122 1 225 296 0 51 chr13 17348353 17348451 -84524718 - L2 LINE L2 -1 3312 3220 290 136 198 12 chr13 17348553 17348634 -84524535 - MLT1J LTR MaLR -2 509 414 1022 179 0 6 chr13 17348639 17348812 -84524357 + FAM SINE Alu 1 172 -3 798 251 54 133 chr13 17348861 17349343 -84523826 - MLT1J LTR MaLR -67 444 1 234 326 52 36 chr13 17349864 17350057 -84523112 - L2 LINE L2 -411 2903 2708 1963 157 13 0 chr13 17350060 17350365 -84522804 + AluSx SINE Alu 4 312 0 244 213 16 33 chr13 17350773 17350834 -84522335 + GA-rich Low_complexity Low_complexity 1 60 0 2076 141 13 7 chr13 17350850 17351156 -84522013 - AluSx SINE Alu -4 308 1 50 0 0 0 chr13 17351178 17351228 -84521941 + AT_rich Low_complexity Low_complexity 1 50 0 862 295 150 62 chr13 17351310 17352397 -84520772 - L2 LINE L2 0 3313 2126 389 275 55 44 chr13 17352465 17352647 -84520522 + MER69 DNA AcHobo 216 399 -827 2549 197 52 89 chr13 17353607 17354491 -84518678 + MER69 DNA AcHobo 1451 2286 -240 2088 117 7 13 chr13 17354491 17354789 -84518380 - AluY SINE Alu -15 296 1 2549 197 52 89 chr13 17354789 17355022 -84518147 + MER69 DNA AcHobo 2286 2526 0 544 252 80 58 chr13 17355058 17355195 -84517974 - L2 LINE L2 -1262 2052 1920 2125 139 46 0 chr13 17355195 17355541 -84517628 + THE1B LTR MaLR 1 362 -2 10619 98 16 58 chr13 17355544 17357191 -84515978 + THE1B-int LTR MaLR 2 1580 0 2219 152 22 0 chr13 17357191 17357547 -84515622 + THE1B LTR MaLR 1 364 0 544 252 80 58 chr13 17357547 17357630 -84515539 - L2 LINE L2 -1394 1920 1822 573 261 90 36 chr13 17357677 17358076 -84515093 + LTR33 LTR ERVL 45 521 0 183 80 0 0 chr13 17358848 17358873 -84514296 + (A)n Simple_repeat Simple_repeat 1 25 0 470 305 67 14 chr13 17359058 17359281 -84513888 + L2 LINE L2 2827 3061 -211 223 240 120 13 chr13 17359416 17359491 -84513678 + L2 LINE L2 3190 3272 0 192 341 24 24 chr13 17359929 17360011 -84513158 + MIR3 SINE MIR 2 83 -125 580 265 0 0 chr13 17360022 17360158 -84513011 + MIR SINE MIR 65 200 -62 282 352 113 7 chr13 17360190 17360332 -84512837 - MIR3 SINE MIR -34 174 18 2350 63 6 54 chr13 17361599 17361916 -84511253 - AluY SINE Alu -9 302 1 447 290 168 0 chr13 17362276 17362431 -84510738 + MER5A DNA MER1_type 9 189 0 413 253 137 60 chr13 17362557 17362739 -84510430 - MIR SINE MIR -66 196 1 1434 293 74 25 chr13 17363716 17364348 -84508821 - MLT2F LTR ERVL 0 663 1 251 255 92 0 chr13 17364531 17364629 -84508540 - MER103 DNA DNA -59 107 1 1656 197 79 6 chr13 17364759 17365099 -84508070 - MLT1A1 LTR MaLR 0 365 1 1264 240 41 43 chr13 17366563 17367001 -84506168 + LTR16A1 LTR ERVL 7 443 -14 770 258 12 8 chr13 17367092 17367344 -84505825 + L1M4 LINE L1 4795 5047 -1099 458 141 141 0 chr13 17367549 17367648 -84505521 + L1ME LINE L1 4839 4951 -1195 299 250 0 0 chr13 17367648 17367716 -84505453 + Tigger5 DNA MER2_type 2255 2322 -1 1162 268 65 6 chr13 17367769 17368561 -84504608 + L1ME LINE L1 4961 5795 -369 255 234 31 55 chr13 17368562 17368655 -84504514 + L1MC5 LINE L1 7789 7880 -81 1767 201 100 0 chr13 17368655 17369034 -84504135 + MER47B DNA MER2_type 1 417 -1 255 234 31 55 chr13 17369034 17369068 -84504101 + L1MC5 LINE L1 7880 7913 -48 266 288 0 0 chr13 17369331 17369411 -84503758 - MIR SINE MIR 0 262 183 267 311 100 28 chr13 17369435 17369615 -84503554 - L2 LINE L2 -5 3308 3116 400 263 10 20 chr13 17369968 17370067 -84503102 + MER5B DNA MER1_type 17 114 -64 191 269 45 30 chr13 17372566 17372633 -84500536 + L2 LINE L2 3205 3272 0 1810 171 44 3 chr13 17373175 17373473 -84499696 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr13 17373874 17373896 -84499273 + AT_rich Low_complexity Low_complexity 1 22 0 2817 70 0 13 chr13 17373978 17374366 -84498803 + MLT2A1 LTR ERVL 1 383 -61 26 50 0 0 chr13 17374366 17374406 -84498763 + AT_rich Low_complexity Low_complexity 1 40 0 230 57 0 0 chr13 17374408 17374443 -84498726 - MLT2A1 LTR ERVL -44 400 366 366 125 11 4 chr13 17374473 17374556 -84498613 + MLT2A2 LTR ERVL 360 453 0 185 289 24 48 chr13 17375120 17375203 -84497966 - L2 LINE L2 -42 3230 3150 1660 214 73 52 chr13 17375311 17375829 -84497340 + MLT1F LTR MaLR 5 533 -9 236 276 23 11 chr13 17375849 17375936 -84497233 + MLT1F-int LTR MaLR 4 91 -1280 374 276 33 14 chr13 17376534 17376744 -84496425 + MLT1F-int LTR MaLR 307 520 -851 1341 112 128 0 chr13 17376778 17377028 -84496141 - L1MA9 LINE L1 -5 6307 6026 379 252 38 112 chr13 17377703 17378017 -84495152 + MLT1F-int LTR MaLR 1444 1734 -1 1007 246 34 15 chr13 17378018 17378286 -84494883 + MLT1F1 LTR MaLR 1 273 -269 2275 230 90 23 chr13 17378289 17378937 -84494232 + MER63C DNA MER1_type 2 704 -356 3086 168 15 74 chr13 17378937 17379671 -84493498 + LTR8 LTR ERV1 1 691 0 2275 230 90 23 chr13 17379671 17379747 -84493422 + MER63C DNA MER1_type 704 774 -156 2688 130 5 2 chr13 17379748 17380171 -84492998 + MER57B LTR ERV1 2 425 -9 604 195 8 8 chr13 17380240 17380368 -84492801 + MER63C DNA MER1_type 805 932 0 * 1176 180 33 12 chr13 17380368 17380612 -84492557 + MLT1F1 LTR MaLR 311 559 -8 341 232 22 103 chr13 17380797 17380923 -84492246 - MIR SINE MIR -64 144 20 256 133 109 32 chr13 17381233 17381248 -84491921 - L1MC3 LINE L1 -9 7776 7764 2160 64 25 0 chr13 17381248 17381530 -84491639 - L1PA5 LINE L1 -5 6149 5861 256 133 109 32 chr13 17381530 17381828 -84491341 - L1MC3 LINE L1 -21 7764 5989 263 149 0 0 chr13 17382729 17382776 -84490393 - Charlie1 DNA MER1_type -8 2753 2707 2229 198 9 2 chr13 17382871 17383305 -84489864 + MER44D DNA MER2_type 1 492 -113 415 284 9 0 chr13 17383301 17383410 -84489759 - Charlie1 DNA MER1_type -2650 111 2 * 420 293 96 27 chr13 17383720 17383908 -84489261 - MIR SINE MIR -11 251 51 790 244 76 25 chr13 17383928 17384166 -84489003 - MIR SINE MIR -1 261 12 2315 71 40 0 chr13 17384816 17385112 -84488057 + AluY SINE Alu 1 308 -3 222 189 57 0 chr13 17385665 17385718 -84487451 + CT-rich Low_complexity Low_complexity 4 59 0 360 43 0 0 chr13 17386076 17386122 -84487047 + (TG)n Simple_repeat Simple_repeat 1 46 0 1103 252 104 9 chr13 17387140 17387485 -84485684 - MLT1F1 LTR MaLR 0 567 190 261 0 0 0 chr13 17387549 17387578 -84485591 + (T)n Simple_repeat Simple_repeat 1 29 0 695 238 18 6 chr13 17387595 17387763 -84485406 - MLT1F1 LTR MaLR -372 170 1 1100 115 28 197 chr13 17388790 17389180 -84483989 - L1MB3 LINE L1 -13 6170 5847 1719 170 0 31 chr13 17389566 17389860 -84483309 + AluJb SINE Alu 1 285 -27 307 256 150 8 chr13 17390854 17390987 -84482182 - MLT1I LTR MaLR -190 219 68 279 266 46 9 chr13 17391186 17391295 -84481874 + MER46C DNA MER2_type 15 127 -211 779 302 53 4 chr13 17391450 17391695 -84481474 - MIR SINE MIR -5 257 1 2090 121 3 7 chr13 17392130 17392435 -84480734 - AluSx SINE Alu -8 304 1 657 167 35 0 chr13 17392438 17392582 -84480587 - L1MA9 LINE L1 -3 6309 6161 5406 26 0 0 chr13 17392825 17393475 -84479694 + L1PA3 LINE L1 5516 6165 0 22 0 0 0 chr13 17393658 17393680 -84479489 + AT_rich Low_complexity Low_complexity 1 22 0 2212 61 3 27 chr13 17394468 17394762 -84478407 - AluY SINE Alu -2 309 23 194 252 272 0 chr13 17395102 17395205 -84477964 + L2 LINE L2 3122 3252 -20 605 200 0 15 chr13 17395225 17395360 -84477809 + L1PB4 LINE L1 6020 6152 -4 1564 160 80 33 chr13 17395457 17395732 -84477437 - AluJo SINE Alu -24 288 1 532 239 201 10 chr13 17396048 17396257 -84476912 - MIR SINE MIR -1 261 13 255 368 11 0 chr13 17396893 17396980 -84476189 - L2 LINE L2 -4 3309 3222 1292 175 5 116 chr13 17397066 17397471 -84475698 - MLT1A1 LTR MaLR -8 418 1 278 288 0 0 chr13 17397479 17397545 -84475624 + L2 LINE L2 3245 3310 -3 202 291 29 107 chr13 17398736 17398839 -84474330 - L2 LINE L2 -71 3201 3107 1887 137 3 11 chr13 17400312 17400617 -84472552 + AluSx SINE Alu 1 303 0 2845 178 40 30 chr13 17401586 17402214 -84470955 - LTR27 LTR ERV1 0 636 3 423 0 0 0 chr13 17402710 17402757 -84470412 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 220 0 60 chr13 17403874 17403924 -84469245 + MIR SINE MIR 23 69 -193 183 281 16 16 chr13 17403939 17404003 -84469166 + MIR SINE MIR 199 262 0 496 208 131 93 chr13 17404354 17404884 -84468285 + MER34 LTR ERV1 47 542 0 1333 127 39 10 chr13 17404933 17405369 -84467800 + LTR54 LTR ERV1 1 510 0 409 262 104 37 chr13 17405385 17405549 -84467620 - MIR SINE MIR -58 204 30 200 291 134 47 chr13 17405571 17405698 -84467471 - L2 LINE L2 -11 3302 3165 317 235 185 34 chr13 17405699 17405818 -84467351 - MER5A DNA MER1_type -46 143 7 206 346 90 60 chr13 17405849 17406083 -84467086 - L2 LINE L2 -221 3051 2811 333 229 102 72 chr13 17406961 17407127 -84466042 - MER20B DNA MER1_type -612 171 1 309 283 13 19 chr13 17407530 17407689 -84465480 + HAL1 LINE L1 1367 1524 -983 306 268 184 48 chr13 17407725 17407812 -84465357 + HAL1 LINE L1 1529 1603 -904 2200 104 7 7 chr13 17407812 17408109 -84465060 - AluSg SINE Alu -13 297 1 306 268 184 48 chr13 17408109 17408189 -84464980 + HAL1 LINE L1 1603 1719 -788 21 0 0 0 chr13 17408549 17408570 -84464599 + AT_rich Low_complexity Low_complexity 1 21 0 1417 150 15 15 chr13 17408959 17409225 -84463944 - L1MC2 LINE L1 -12 6332 6067 424 277 0 0 chr13 17409650 17409762 -84463407 - L2 LINE L2 -606 2708 2597 1715 190 27 0 chr13 17409804 17410136 -84463033 - MER58B DNA MER1_type 0 341 1 282 0 77 0 chr13 17410137 17410176 -84462993 + T-rich Low_complexity Low_complexity 3 180 0 1540 99 27 157 chr13 17410176 17410509 -84462660 - AluSc SINE Alu -1 328 1 437 292 129 15 chr13 17411490 17411815 -84461354 + L1MC/D LINE L1 3589 3950 -2196 2269 49 10 26 chr13 17412027 17412331 -84460838 + AluY SINE Alu 1 299 -12 251 287 74 9 chr13 17412353 17412461 -84460708 - MLT1I LTR MaLR -22 387 273 413 290 45 11 chr13 17412466 17412642 -84460527 + L1MC/D LINE L1 5615 5796 -2012 21 0 0 0 chr13 17412648 17412669 -84460500 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 17412830 17412868 -84460301 + AT_rich Low_complexity Low_complexity 1 38 0 309 298 36 36 chr13 17412967 17413135 -84460034 - L1 LINE L1 -3677 2469 2302 1679 146 3 3 chr13 17414170 17414457 -84458712 + L1MA6 LINE L1 5844 6130 -170 1843 172 46 0 chr13 17414464 17414790 -84458379 - MER7A DNA MER2_type -7 339 1 857 205 100 0 chr13 17414810 17415000 -84458169 - MER3 DNA MER1_type 0 209 1 3937 222 89 42 chr13 17416118 17417442 -84455727 + HsTC2 DNA Tc2 61 1629 -269 2261 55 4 4 chr13 17417442 17417740 -84455429 + AluY SINE Alu 9 306 0 3937 222 89 42 chr13 17417740 17418026 -84455143 + HsTC2 DNA Tc2 1629 1900 2 1788 186 0 3 chr13 17420263 17420564 -84452605 + AluJb SINE Alu 1 300 -12 2286 112 0 0 chr13 17420567 17420870 -84452299 + AluSg SINE Alu 1 303 -7 2038 194 69 6 chr13 17421293 17421784 -84451385 - L1PA16 LINE L1 -1743 4403 3882 5416 134 18 16 chr13 17421802 17423528 -84449641 + L1PA16 LINE L1 4434 6157 -9 7893 135 16 10 chr13 17424669 17425067 -84448102 - HSMAR2 DNA Mariner -2 1300 906 207 0 0 0 chr13 17425067 17425090 -84448079 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7893 135 16 10 chr13 17425090 17425982 -84447187 - HSMAR2 DNA Mariner -396 906 2 477 313 25 40 chr13 17428563 17428761 -84444408 - MIR SINE MIR -12 250 56 453 19 0 0 chr13 17428988 17429042 -84444127 + (CA)n Simple_repeat Simple_repeat 2 55 0 6968 243 50 32 chr13 17429840 17430704 -84442465 + L1MEc LINE L1 2166 3012 -3203 1692 191 0 3 chr13 17430704 17430992 -84442177 + AluJb SINE Alu 1 287 -25 6968 243 50 32 chr13 17430992 17432872 -84440297 + L1MEc LINE L1 3012 4935 -1280 2160 158 5 16 chr13 17432872 17433251 -84439918 - THE1C LTR MaLR 0 375 1 6968 243 50 32 chr13 17433251 17433386 -84439783 + L1MEc LINE L1 4935 5066 -1149 1077 165 0 0 chr13 17433386 17433544 -84439625 + AluSq SINE Alu 1 158 -155 275 198 26 103 chr13 17433552 17433668 -84439501 + L1MA10 LINE L1 6228 6334 0 810 266 254 7 chr13 17434074 17434458 -84438711 + L2 LINE L2 2519 2989 -283 894 224 21 5 chr13 17434574 17434766 -84438403 + MLT1H LTR MaLR 40 234 -315 1470 196 58 0 chr13 17434884 17435002 -84438167 + AluJo SINE Alu 3 113 -199 243 0 0 0 chr13 17435002 17435029 -84438140 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1470 196 58 0 chr13 17435029 17435170 -84437999 + AluJo SINE Alu 113 277 -35 226 226 0 32 chr13 17435181 17435243 -84437926 + MLT1G1 LTR MaLR 520 579 -16 440 245 9 9 chr13 17435263 17435369 -84437800 + L2 LINE L2 3171 3276 -37 198 0 0 0 chr13 17435437 17435459 -84437710 + (TA)n Simple_repeat Simple_repeat 1 22 0 1039 251 47 0 chr13 17435694 17435929 -84437240 - MLT1F1 LTR MaLR 0 567 322 2084 92 9 82 chr13 17436059 17436387 -84436782 - AluSx SINE Alu -5 307 4 380 226 77 107 chr13 17436390 17436558 -84436611 - MLT1E LTR MaLR -375 167 5 189 107 0 0 chr13 17437361 17437389 -84435780 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 213 196 0 0 chr13 17437765 17437811 -84435358 + (CA)n Simple_repeat Simple_repeat 1 46 0 1384 276 56 82 chr13 17439226 17439937 -84433232 + MER21B LTR ERV1 22 714 -149 387 194 61 103 chr13 17440298 17440463 -84432706 + L2 LINE L2 2357 2514 -800 992 188 2 205 chr13 17440504 17440767 -84432402 + Charlie1a DNA MER1_type 1 153 -2608 1131 201 43 112 chr13 17440767 17441159 -84432010 - MLT1A1 LTR MaLR 0 365 1 992 188 2 205 chr13 17441159 17441304 -84431865 + Charlie1a DNA MER1_type 153 326 -1129 621 172 70 102 chr13 17441365 17441580 -84431589 + MER3 DNA MER1_type 1 208 -1 353 276 141 18 chr13 17442917 17443080 -84430089 - MIR SINE MIR -50 212 30 2115 138 33 30 chr13 17444832 17445195 -84427974 - THE1B LTR MaLR 0 364 1 200 83 0 28 chr13 17445577 17445613 -84427556 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 2232 147 0 8 chr13 17445617 17445984 -84427185 - L1PB1 LINE L1 -3 6864 6501 551 83 83 5 chr13 17445989 17446198 -84426971 + (TA)n Simple_repeat Simple_repeat 1 225 0 555 65 98 0 chr13 17446396 17446549 -84426620 + (TA)n Simple_repeat Simple_repeat 1 168 0 13546 197 60 9 chr13 17446549 17452591 -84420578 - L1PB1 LINE L1 -360 6507 6 188 356 139 0 chr13 17453041 17453142 -84420027 + L2 LINE L2 3149 3263 -9 243 245 0 0 chr13 17453765 17453818 -84419351 + MIR SINE MIR 74 126 -82 213 132 0 0 chr13 17455214 17455252 -84417917 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 1882 135 4 4 chr13 17457238 17457553 -84415616 + AluSx SINE Alu 2 316 0 4813 85 27 3 chr13 17457773 17458445 -84414724 + LTR12 LTR ERV1 1 688 0 2532 292 96 46 chr13 17458580 17459629 -84413540 + L2 LINE L2 1294 2289 -1024 180 77 0 0 chr13 17459629 17459655 -84413514 + (TG)n Simple_repeat Simple_repeat 2 27 0 2532 292 96 46 chr13 17459655 17460511 -84412658 + L2 LINE L2 2289 3305 -8 2516 212 63 26 chr13 17460968 17461726 -84411443 + L1M4 LINE L1 2323 3108 -3038 2625 211 88 20 chr13 17461731 17462346 -84410823 - L1MB8 LINE L1 -207 5971 5399 2197 135 0 0 chr13 17462346 17462643 -84410526 + AluSx SINE Alu 1 297 -15 2625 211 88 20 chr13 17462643 17463100 -84410069 - L1MB8 LINE L1 -779 5399 4813 295 250 0 19 chr13 17463165 17463273 -84409896 + L1M4 LINE L1 2912 3017 -3129 4697 138 20 1 chr13 17463553 17464301 -84408868 - L1MC1 LINE L1 0 6333 5572 21 0 0 0 chr13 17464369 17464390 -84408779 + AT_rich Low_complexity Low_complexity 1 21 0 451 280 34 11 chr13 17464477 17464652 -84408517 + HAL1b LINE L1 521 699 -649 192 314 157 13 chr13 17464956 17465109 -84408060 + L2 LINE L2 3097 3271 -1 437 305 28 67 chr13 17466540 17466689 -84406480 + MIR3 SINE MIR 20 163 -45 489 261 30 0 chr13 17466937 17467071 -84406098 + MER117 DNA MER1_type 32 169 -28 776 255 29 45 chr13 17467392 17467554 -84405615 + MLT1J LTR MaLR 45 208 -303 2080 163 47 126 chr13 17467554 17467621 -84405548 + LTR48B LTR ERV1 1 72 -572 2031 138 3 7 chr13 17467621 17467919 -84405250 + AluSx SINE Alu 1 297 -15 270 0 0 0 chr13 17467919 17467949 -84405220 + (TA)n Simple_repeat Simple_repeat 2 31 0 2080 163 47 126 chr13 17467949 17468579 -84404590 + LTR48B LTR ERV1 70 644 0 776 255 29 45 chr13 17468579 17468659 -84404510 + MLT1J LTR MaLR 208 283 -228 1009 208 38 5 chr13 17468996 17469208 -84403961 + MER58A DNA MER1_type 6 224 0 1019 226 50 31 chr13 17470093 17470411 -84402758 + MER33 DNA MER1_type 1 324 0 3651 120 12 2 chr13 17470423 17470941 -84402228 + MER1A DNA MER1_type 5 527 0 724 144 14 7 chr13 17471552 17471691 -84401478 - L1MA6 LINE L1 -5 6295 6156 1832 152 3 7 chr13 17472097 17472380 -84400789 + AluJo SINE Alu 6 287 -25 1734 144 180 18 chr13 17473876 17474264 -84398905 + LTR47A LTR ERVL 2 452 0 1979 122 14 0 chr13 17474393 17474695 -84398474 - AluSg SINE Alu 0 306 1 347 309 41 0 chr13 17474697 17474794 -84398375 - L2 LINE L2 -8 3305 3205 806 215 13 0 chr13 17474946 17475104 -84398065 + FAM SINE Alu 5 164 -11 303 204 61 21 chr13 17475151 17475259 -84397910 + L1MD2 LINE L1 6243 7994 -1 1975 152 24 32 chr13 17475350 17475726 -84397443 - THE1C LTR MaLR 0 375 3 22 0 0 0 chr13 17475815 17475837 -84397332 + AT_rich Low_complexity Low_complexity 1 22 0 263 313 104 10 chr13 17477166 17477262 -84395907 + L2 LINE L2 3168 3272 0 292 286 27 20 chr13 17477752 17477899 -84395270 + L1MC4a LINE L1 5758 5905 -1903 27 0 0 0 chr13 17478039 17478066 -84395103 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 17478426 17478447 -84394722 + AT_rich Low_complexity Low_complexity 1 21 0 249 231 0 19 chr13 17478490 17478542 -84394627 + MIR SINE MIR 114 164 -98 222 37 0 0 chr13 17479767 17479794 -84393375 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1302 190 76 100 chr13 17481159 17481415 -84391754 - MER34B LTR ERV1 0 585 324 858 134 8 15 chr13 17481415 17481549 -84391620 + FLAM_C SINE Alu 1 133 0 1302 190 76 100 chr13 17481549 17481860 -84391309 - MER34B LTR ERV1 -261 324 13 1970 144 3 0 chr13 17482158 17482457 -84390712 - AluSx SINE Alu -12 300 1 216 0 0 0 chr13 17482900 17482924 -84390245 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 463 165 0 20 chr13 17482993 17483101 -84390068 + L1MA7 LINE L1 5914 6020 -280 299 185 0 65 chr13 17483110 17483202 -84389967 + L1MA7 LINE L1 6206 6291 0 331 276 41 41 chr13 17483780 17484007 -84389162 - MER41B LTR ERV1 -220 415 55 500 255 243 31 chr13 17484081 17484340 -84388829 + L2 LINE L2 2999 3312 -1 1329 211 22 89 chr13 17484423 17484452 -84388717 + LTR37B LTR ERV1 10 39 -429 2584 196 30 13 chr13 17484452 17484992 -84388177 + MER44D DNA MER2_type 1 604 -1 1329 211 22 89 chr13 17484992 17485454 -84387715 + LTR37B LTR ERV1 39 468 0 222 128 0 0 chr13 17486437 17486476 -84386693 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 11996 132 36 7 chr13 17486485 17486528 -84386641 + Tigger1 DNA MER2_type 307 347 -2071 273 29 0 0 chr13 17486528 17486562 -84386607 + (TC)n Simple_repeat Simple_repeat 1 34 0 11996 132 36 7 chr13 17486562 17487171 -84385998 + Tigger1 DNA MER2_type 347 937 -1481 2020 144 0 22 chr13 17487171 17487484 -84385685 - AluSx SINE Alu -6 306 1 11996 132 36 7 chr13 17487484 17488883 -84384286 + Tigger1 DNA MER2_type 937 2418 0 775 138 36 0 chr13 17489079 17489217 -84383952 - Tigger1 DNA MER2_type -223 2195 2053 2277 113 3 0 chr13 17489253 17489553 -84383616 + AluSp SINE Alu 1 301 -12 21 57 0 0 chr13 17489774 17489809 -84383360 + AT_rich Low_complexity Low_complexity 1 35 0 2140 200 41 12 chr13 17490395 17490886 -84382283 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr13 17491058 17491083 -84382086 + AT_rich Low_complexity Low_complexity 1 25 0 1595 122 4 32 chr13 17491203 17491342 -84381827 + AluSq SINE Alu 1 132 -181 2198 125 0 0 chr13 17491342 17491645 -84381524 + AluSc SINE Alu 1 303 -6 1595 122 4 32 chr13 17491645 17491751 -84381418 + AluSq SINE Alu 132 239 -74 1982 147 26 3 chr13 17491849 17492155 -84381014 + AluSq SINE Alu 1 313 0 694 203 0 0 chr13 17492539 17492657 -84380512 + FLAM_C SINE Alu 1 118 -15 1009 218 53 31 chr13 17493237 17493296 -84379873 - LTR37A LTR ERV1 -22 404 348 1936 164 3 0 chr13 17493296 17493589 -84379580 + AluSq SINE Alu 1 294 -19 1009 218 53 31 chr13 17493589 17493887 -84379282 - LTR37A LTR ERV1 -78 348 39 2012 141 9 3 chr13 17494235 17494575 -84378594 - LTR35 LTR ERV1 0 618 277 1257 160 0 0 chr13 17494575 17494762 -84378407 + AluSg/x SINE Alu 100 286 -26 1739 103 0 73 chr13 17494769 17494833 -84378336 - LTR35 LTR ERV1 -339 279 212 2021 136 7 7 chr13 17494833 17495128 -84378041 + AluSx SINE Alu 1 295 -17 1739 103 0 73 chr13 17495128 17495364 -84377805 - LTR35 LTR ERV1 -406 212 1 2559 202 85 69 chr13 17496437 17497250 -84375919 + LTR1B LTR ERV1 1 826 0 271 348 76 50 chr13 17497814 17498274 -84374895 - L2 LINE L2 -411 2903 2432 1721 182 89 9 chr13 17498796 17499225 -84373944 + MER31A LTR ERV1 1 463 -22 2214 136 31 0 chr13 17499275 17499627 -84373542 + THE1B LTR MaLR 1 363 -1 8690 122 35 59 chr13 17499628 17501192 -84371977 + THE1B-int LTR MaLR 1 1527 -53 2132 142 40 6 chr13 17501211 17501563 -84371606 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr13 17502617 17502645 -84370524 + AT_rich Low_complexity Low_complexity 1 28 0 317 155 0 36 chr13 17502854 17502938 -84370231 - LTR37A LTR ERV1 0 426 346 1769 173 0 7 chr13 17502946 17503235 -84369934 + AluJb SINE Alu 3 289 -23 428 212 9 44 chr13 17503264 17503377 -84369792 + MER31B LTR ERV1 1 109 -357 373 147 13 13 chr13 17503518 17503593 -84369576 + MLT1B LTR MaLR 316 390 0 254 262 43 77 chr13 17503593 17503893 -84369276 + MLT1F LTR MaLR 133 539 -3 309 26 0 0 chr13 17504341 17504379 -84368790 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1324 146 84 62 chr13 17504379 17504653 -84368516 - AluJo SINE Alu -32 280 1 1824 179 101 30 chr13 17504748 17504878 -84368291 + MER77 LTR ERV1 182 301 -304 2101 138 0 20 chr13 17504878 17505182 -84367987 + AluY SINE Alu 1 298 -13 1824 179 101 30 chr13 17505182 17505447 -84367722 + MER77 LTR ERV1 301 605 0 371 322 47 13 chr13 17505756 17505905 -84367264 + MIR SINE MIR 50 203 -59 22 35 0 0 chr13 17506657 17506686 -84366483 + AT_rich Low_complexity Low_complexity 1 29 0 1695 166 43 0 chr13 17506691 17506969 -84366200 + AluJo SINE Alu 1 290 -22 22 0 0 0 chr13 17506970 17506992 -84366177 + AT_rich Low_complexity Low_complexity 1 22 0 1803 97 4 4 chr13 17507243 17507481 -84365688 - AluSq SINE Alu -75 238 1 225 0 0 0 chr13 17508071 17508096 -84365073 + (T)n Simple_repeat Simple_repeat 1 25 0 227 234 146 135 chr13 17508213 17508258 -84364911 - MIR3 SINE MIR -12 196 153 2085 119 24 0 chr13 17508258 17508576 -84364593 + AluSq SINE Alu 1 313 0 227 234 146 135 chr13 17508576 17508722 -84364447 - MIR3 SINE MIR -55 153 3 184 129 0 32 chr13 17508885 17508916 -84364253 - MER5A DNA MER1_type -116 73 44 207 0 0 0 chr13 17509612 17509635 -84363534 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2016 125 3 26 chr13 17509664 17509969 -84363200 + AluSx SINE Alu 1 298 -14 1482 144 136 0 chr13 17510132 17510389 -84362780 + AluSx SINE Alu 5 296 -16 32 67 0 0 chr13 17510389 17510449 -84362720 + AT_rich Low_complexity Low_complexity 1 60 0 2392 50 0 0 chr13 17511363 17511691 -84361478 - AluY SINE Alu 0 328 1 300 256 25 13 chr13 17513677 17513784 -84359385 - L2 LINE L2 -281 2991 2883 297 0 0 0 chr13 17513852 17513885 -84359284 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2918 26 0 0 chr13 17513890 17514231 -84358938 - L1PA3 LINE L1 0 6155 5815 617 324 45 24 chr13 17514762 17515017 -84358152 - MER102b DNA MER1_type -1088 340 75 243 0 0 0 chr13 17515017 17515044 -84358125 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 617 324 45 24 chr13 17515044 17515121 -84358048 - MER102b DNA MER1_type -1353 75 1 399 275 37 0 chr13 17515204 17515313 -84357856 + MER117 DNA MER1_type 1 113 -84 1373 189 126 31 chr13 17516427 17516808 -84356361 + LTR37A LTR ERV1 8 424 -2 218 279 12 47 chr13 17517703 17517789 -84355380 - L2 LINE L2 -74 3198 3116 679 139 70 16 chr13 17518718 17518847 -84354322 + LTR53 LTR ERVL 1 136 -383 1602 175 25 74 chr13 17518950 17519315 -84353854 - MLT1B LTR MaLR -43 347 1 635 292 15 15 chr13 17519439 17519641 -84353528 + MER58A DNA MER1_type 3 204 -20 298 242 0 0 chr13 17519640 17519702 -84353467 + MER58A DNA MER1_type 163 224 0 * 314 327 29 27 chr13 17519768 17519921 -84353248 + MIR3 SINE MIR 15 164 -55 680 237 189 40 chr13 17520446 17520695 -84352474 + MLT1H LTR MaLR 71 356 -193 330 273 149 0 chr13 17521137 17521258 -84351911 + MER117 DNA MER1_type 2 140 -57 21 0 0 0 chr13 17521407 17521428 -84351741 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 17521540 17521562 -84351607 + AT_rich Low_complexity Low_complexity 1 22 0 2324 103 0 0 chr13 17521566 17521857 -84351312 - AluSx SINE Alu -21 291 1 27 49 0 0 chr13 17521912 17521953 -84351216 + AT_rich Low_complexity Low_complexity 1 41 0 1038 191 4 71 chr13 17522008 17522233 -84350936 + MER58A DNA MER1_type 4 213 -11 333 301 183 20 chr13 17522363 17522516 -84350653 + MER5B DNA MER1_type 1 178 0 1841 143 38 0 chr13 17523736 17524023 -84349146 - AluSx SINE Alu -14 298 1 25 0 0 0 chr13 17524031 17524056 -84349113 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr13 17524377 17524412 -84348757 - L2 LINE L2 -6 3307 3273 532 233 184 82 chr13 17524962 17525293 -84347876 - MLT1A1 LTR MaLR 0 365 1 2058 189 26 8 chr13 17525304 17525684 -84347485 - MLT1A1-int LTR MaLR -11 1724 1338 1273 148 15 0 chr13 17525749 17525952 -84347217 - AluSg/x SINE Alu -4 308 103 760 182 32 0 chr13 17525957 17526111 -84347058 - MLT2B1 LTR ERVL -361 159 1 343 281 113 38 chr13 17528356 17528541 -84344628 + MER20 DNA MER1_type 1 199 -20 279 320 133 35 chr13 17529674 17529930 -84343239 - L2 LINE L2 -782 2532 2252 410 271 271 52 chr13 17530292 17530661 -84342508 + L2 LINE L2 2863 3312 -1 2147 110 0 19 chr13 17531454 17531762 -84341407 + AluSx SINE Alu 1 302 -10 755 109 0 9 chr13 17532129 17532239 -84340930 - MER46A DNA MER2_type -3 233 125 240 337 281 6 chr13 17532949 17533127 -84340042 + L2 LINE L2 189 415 -2899 6061 94 0 17 chr13 17533237 17534134 -84339035 + HERVH LTR ERV1 2114 2995 -4718 991 120 7 0 chr13 17534113 17534263 -84338906 + HERVH LTR ERV1 3140 3290 -4423 * 1053 142 0 6 chr13 17534253 17534415 -84338754 + HERVH LTR ERV1 3492 3652 -4061 * 4606 60 10 2 chr13 17534407 17535010 -84338159 + HERVH LTR ERV1 7106 7713 0 1461 165 65 79 chr13 17535010 17535428 -84337741 + LTR7 LTR ERV1 1 412 -38 249 175 0 35 chr13 17535546 17535603 -84337566 - LTR37A LTR ERV1 -288 138 84 1340 194 46 9 chr13 17535626 17535928 -84337241 - MER61A LTR ERV1 -37 306 1 323 196 0 0 chr13 17535950 17536006 -84337163 - LTR37A LTR ERV1 -363 63 8 28 0 0 0 chr13 17536300 17536328 -84336841 + AT_rich Low_complexity Low_complexity 1 28 0 270 139 0 0 chr13 17536615 17536658 -84336511 + MSTC LTR MaLR 4 46 -382 22 56 0 0 chr13 17537694 17537730 -84335439 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr13 17539185 17539210 -84333959 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1519 141 147 78 chr13 17540319 17540351 -84332818 - MSTB LTR MaLR -44 382 354 2357 91 0 3 chr13 17540351 17540658 -84332511 + AluSg SINE Alu 5 310 0 1519 141 147 78 chr13 17540658 17540958 -84332211 - MSTB LTR MaLR -72 354 27 216 250 0 0 chr13 17541193 17541245 -84331924 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 726 287 188 14 chr13 17541564 17541857 -84331312 - L3 LINE CR1 -813 764 421 1073 265 90 24 chr13 17541868 17542245 -84330924 - MLT1L LTR MaLR -18 597 196 3280 64 0 12 chr13 17542271 17542694 -84330475 - L1PA8A LINE L1 -28 6103 5686 287 197 121 0 chr13 17542695 17542761 -84330408 - MLT1L LTR MaLR -405 210 137 811 133 111 0 chr13 17542977 17543112 -84330057 + AluSg/x SINE Alu 125 274 -36 310 0 67 0 chr13 17543117 17543162 -84330007 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 375 357 5 55 chr13 17544214 17544413 -84328756 - MIR SINE MIR -73 189 1 186 241 56 37 chr13 17544572 17544626 -84328543 - L2 LINE L2 -8 3305 3251 433 290 89 24 chr13 17545959 17546128 -84327041 + MIR SINE MIR 12 191 -71 354 226 168 66 chr13 17546686 17546823 -84326346 - MIR SINE MIR 0 262 112 375 267 154 21 chr13 17546826 17547066 -84326103 - L1ME LINE L1 -303 5818 5547 601 172 0 0 chr13 17547122 17547215 -84325954 - AluJb SINE Alu -17 295 203 * 651 162 0 0 chr13 17547214 17547313 -84325856 - AluJ/FLAM SINE Alu -213 99 1 74 69 0 0 chr13 17547494 17547638 -84325531 + AT_rich Low_complexity Low_complexity 1 144 0 512 247 209 21 chr13 17547651 17547890 -84325279 - MLT1K LTR MaLR -26 562 279 494 267 17 0 chr13 17548052 17548172 -84324997 - L2 LINE L2 -1357 1957 1836 872 292 118 32 chr13 17548210 17549065 -84324104 + L1ME3 LINE L1 4180 5108 -1038 442 256 11 11 chr13 17549076 17549256 -84323913 + GA-rich Low_complexity Low_complexity 1 180 0 324 200 29 19 chr13 17549269 17549374 -84323795 + GA-rich Low_complexity Low_complexity 2 107 0 1357 266 57 15 chr13 17549375 17550090 -84323079 + L1ME3 LINE L1 5122 5862 -300 1624 274 56 2 chr13 17550220 17550651 -84322518 - LTR16B LTR ERVL 0 464 11 1737 182 66 3 chr13 17550956 17551291 -84321878 + MSTA LTR MaLR 1 356 -72 2096 290 135 23 chr13 17551291 17552273 -84320896 - L2 LINE L2 -1687 1627 536 234 145 0 48 chr13 17552354 17552416 -84320753 - L1MC5 LINE L1 -44 7917 7859 284 327 150 19 chr13 17553045 17553460 -84319709 + L2 LINE L2 2586 3057 -215 204 313 0 0 chr13 17553599 17553647 -84319522 + MIR SINE MIR 209 256 -6 530 164 50 29 chr13 17556301 17556441 -84316728 + LTR49-int LTR ERV1 1152 1294 -3642 499 127 155 56 chr13 17556489 17556631 -84316538 + LTR49-int LTR ERV1 1291 1446 -3490 539 263 17 30 chr13 17556775 17557011 -84316158 + LTR49-int LTR ERV1 1683 1915 -3021 2564 202 13 25 chr13 17557423 17557947 -84315222 - MLT2B1 LTR ERVL 0 520 3 260 309 53 0 chr13 17558951 17559045 -84314124 + LTR49-int LTR ERV1 4466 4564 -1767 2984 221 40 77 chr13 17559091 17560082 -84313087 + LTR49-int LTR ERV1 3270 4224 -712 1456 187 8 0 chr13 17560097 17560364 -84312805 + MER49 LTR ERV1 15 283 -640 1401 257 6 12 chr13 17560424 17560747 -84312422 + MER4D LTR ERV1 551 871 -32 595 144 162 77 chr13 17560799 17561021 -84312148 + LTR37A LTR ERV1 5 245 -181 325 277 0 0 chr13 17561070 17561171 -84311998 + LTR49-int LTR ERV1 4370 4470 -466 322 233 9 95 chr13 17561801 17561917 -84311252 + MER92B LTR ERV1 1 106 -530 437 116 14 0 chr13 17562091 17562160 -84311009 + MER92C LTR ERV1 485 554 0 1849 258 117 72 chr13 17562232 17563571 -84309598 - HAL1 LINE L1 -396 2111 713 756 139 90 0 chr13 17563994 17564116 -84309053 - FLAM_A SINE Alu 0 133 1 1807 208 125 22 chr13 17564286 17564868 -84308301 + LTR48B LTR ERV1 1 642 -2 258 32 0 0 chr13 17566974 17567005 -84306164 + (TA)n Simple_repeat Simple_repeat 2 32 0 1735 173 19 3 chr13 17567006 17567313 -84305856 - AluJo SINE Alu 0 312 1 1910 204 13 15 chr13 17567501 17567898 -84305271 - MSTD LTR MaLR 0 396 1 27 29 0 0 chr13 17567993 17568027 -84305142 + AT_rich Low_complexity Low_complexity 1 34 0 2487 110 0 24 chr13 17568781 17569154 -84304015 - THE1B LTR MaLR 0 364 1 1995 174 50 27 chr13 17569247 17569787 -84303382 - MLT2A2 LTR ERVL -2 552 1 245 162 59 44 chr13 17569991 17570059 -84303110 - MLT1K LTR MaLR -340 248 180 276 313 38 0 chr13 17571062 17571193 -84301976 + (TA)n Simple_repeat Simple_repeat 1 136 0 499 206 44 44 chr13 17571310 17571470 -84301699 + MER112 DNA MER1_type 90 249 -11 319 298 0 0 chr13 17572275 17572359 -84300810 + L2 LINE L2 3186 3269 -3 258 323 84 54 chr13 17572463 17572832 -84300337 + L2 LINE L2 2398 2777 -537 221 276 35 0 chr13 17573088 17573146 -84300023 - L2 LINE L2 -17 3296 3237 728 212 26 82 chr13 17573283 17573514 -84299655 + MER20 DNA MER1_type 2 219 0 3078 119 38 4 chr13 17573672 17574194 -84298975 - L1MB3 LINE L1 -10 6173 5634 387 301 78 19 chr13 17574194 17574400 -84298769 - L2 LINE L2 -7 3306 3089 255 297 0 0 chr13 17574524 17574588 -84298581 - MIR SINE MIR -149 113 50 1955 104 75 0 chr13 17574669 17574949 -84298220 - AluSp SINE Alu -12 301 1 240 283 0 0 chr13 17575809 17575862 -84297307 - L2 LINE L2 -10 3262 3210 453 291 10 0 chr13 17576187 17576290 -84296879 - L2 LINE L2 -33 3239 3136 327 301 90 32 chr13 17577273 17577429 -84295740 - MLT1K LTR MaLR -394 194 30 498 276 184 44 chr13 17578290 17578605 -84294564 - L2 LINE L2 -1634 1680 1322 2078 93 4 0 chr13 17578913 17579192 -84293977 - AluY SINE Alu -4 307 28 241 293 24 37 chr13 17579292 17579374 -84293795 + L2 LINE L2 3233 3313 0 21 36 0 0 chr13 17579549 17579577 -84293592 + AT_rich Low_complexity Low_complexity 1 28 0 2159 87 38 0 chr13 17580202 17580491 -84292678 - AluSc SINE Alu -9 300 1 25 65 0 0 chr13 17581017 17581063 -84292106 + AT_rich Low_complexity Low_complexity 1 46 0 2450 70 0 0 chr13 17581119 17581420 -84291749 + AluY SINE Alu 1 301 -10 234 222 63 0 chr13 17583862 17583925 -84289244 + Tigger1 DNA MER2_type 1 67 -2351 8555 126 20 4 chr13 17583926 17585226 -84287943 + Tigger1 DNA MER2_type 39 1359 -1059 1510 182 24 68 chr13 17585338 17585707 -84287462 + L1PA15 LINE L1 5810 6162 -3 21 0 0 0 chr13 17586057 17586078 -84287091 + AT_rich Low_complexity Low_complexity 1 21 0 381 326 191 0 chr13 17586638 17586830 -84286339 - MIR SINE MIR -2 260 34 5418 252 76 47 chr13 17587451 17588170 -84284999 + L1M4 LINE L1 1617 2314 -3901 569 277 94 0 chr13 17588170 17588372 -84284797 - MER58A DNA MER1_type -3 221 1 5418 252 76 47 chr13 17588372 17588707 -84284462 + L1M4 LINE L1 2314 2638 -3577 1860 148 7 7 chr13 17588707 17588997 -84284172 + AluSx SINE Alu 2 291 -21 5418 252 76 47 chr13 17588997 17589973 -84283196 + L1M4 LINE L1 2638 3584 -2631 1937 106 0 4 chr13 17589973 17590237 -84282932 + AluSx SINE Alu 48 310 -2 5418 252 76 47 chr13 17590237 17591748 -84281421 + L1M4 LINE L1 3584 5228 -987 851 202 52 0 chr13 17591752 17592008 -84281161 + L1M4 LINE L1 5252 5518 -725 539 333 86 44 chr13 17592179 17592694 -84280475 + L2 LINE L2 2645 3191 -122 297 0 0 0 chr13 17592694 17592727 -84280442 + (TG)n Simple_repeat Simple_repeat 2 34 0 539 333 86 44 chr13 17592727 17592822 -84280347 + L2 LINE L2 3191 3281 -32 185 254 0 15 chr13 17593029 17593096 -84280073 + (TA)n Simple_repeat Simple_repeat 2 67 0 22 56 0 0 chr13 17593589 17593625 -84279544 + AT_rich Low_complexity Low_complexity 1 36 0 195 69 0 0 chr13 17594160 17594189 -84278980 + (T)n Simple_repeat Simple_repeat 1 29 0 239 301 35 71 chr13 17594748 17594861 -84278308 + MIR3 SINE MIR 77 185 -23 2193 109 7 0 chr13 17595548 17595842 -84277327 + AluSx SINE Alu 1 296 -16 263 252 159 20 chr13 17595864 17596015 -84277154 + L1ME4a LINE L1 5950 6121 0 193 373 27 0 chr13 17596073 17596148 -84277021 + L2 LINE L2 3148 3224 -48 187 351 0 18 chr13 17596661 17596718 -84276451 + MIR SINE MIR 24 79 -183 211 247 74 12 chr13 17596747 17596828 -84276341 + MIR SINE MIR 148 233 -29 1963 189 37 11 chr13 17596838 17597218 -84275951 + MSTD LTR MaLR 1 390 -6 23 0 0 0 chr13 17597401 17597424 -84275745 + AT_rich Low_complexity Low_complexity 1 23 0 584 298 235 22 chr13 17597982 17598395 -84274774 + L2 LINE L2 1248 1748 -1566 1308 191 57 35 chr13 17598395 17598536 -84274633 - AluJo SINE Alu -23 289 152 351 0 0 0 chr13 17598536 17598575 -84274594 + (TA)n Simple_repeat Simple_repeat 1 39 0 1308 191 57 35 chr13 17598575 17598716 -84274453 - AluJo SINE Alu -160 152 1 1921 132 14 14 chr13 17598722 17599009 -84274160 - AluJb SINE Alu -12 300 14 2087 279 114 27 chr13 17599017 17600169 -84273000 + L2 LINE L2 2078 3313 0 544 219 224 10 chr13 17600520 17600712 -84272457 + L1MB7 LINE L1 5868 6100 -84 1833 199 6 0 chr13 17600724 17601061 -84272108 - MER2 DNA MER2_type -6 339 1 254 224 24 12 chr13 17601061 17601146 -84272023 + L1MB2 LINE L1 6086 6171 0 652 328 77 35 chr13 17601354 17601524 -84271645 + L1MDb LINE L1 949 1110 -5296 1527 201 3 3 chr13 17601524 17601827 -84271342 + AluJb SINE Alu 1 303 -9 652 328 77 35 chr13 17601827 17602328 -84270841 + L1MDb LINE L1 1110 1649 -4757 1232 107 11 28 chr13 17602377 17602554 -84270615 + AluSg/x SINE Alu 114 287 -25 429 379 71 41 chr13 17602568 17603283 -84269886 + L1MDb LINE L1 1766 2502 -4085 325 361 40 83 chr13 17603523 17603764 -84269405 + L2 LINE L2 2962 3189 -83 1620 234 81 32 chr13 17603764 17604256 -84268913 - LTR40a LTR ERVL -1 518 3 325 361 40 83 chr13 17604256 17604316 -84268853 + L2 LINE L2 3189 3250 -22 21 0 0 0 chr13 17604328 17604349 -84268820 + AT_rich Low_complexity Low_complexity 1 21 0 4136 81 21 2 chr13 17604987 17605565 -84267604 + L1PA10 LINE L1 5575 6163 -5 912 175 78 53 chr13 17605963 17606169 -84267000 - AluJb SINE Alu -15 297 87 2584 96 6 3 chr13 17606383 17606737 -84266432 + HSMAR1 DNA Mariner 931 1285 -2 4460 119 53 24 chr13 17607390 17608177 -84264992 - L1MA5 LINE L1 0 6300 5491 576 244 0 16 chr13 17608247 17608389 -84264780 + FLAM_A SINE Alu 3 133 0 180 0 0 0 chr13 17608732 17608752 -84264417 + (TG)n Simple_repeat Simple_repeat 2 21 0 25 51 0 0 chr13 17608752 17608791 -84264378 + AT_rich Low_complexity Low_complexity 1 39 0 252 186 29 43 chr13 17608815 17608885 -84264284 + MIR SINE MIR 194 262 0 339 319 67 14 chr13 17609090 17609300 -84263869 - HAL1 LINE L1 -746 1761 1541 694 224 29 17 chr13 17609447 17609621 -84263548 + MIR SINE MIR 3 178 -84 780 132 0 8 chr13 17610009 17610138 -84263031 + L1MA3 LINE L1 6173 6300 -5 7352 93 12 18 chr13 17610264 17611327 -84261842 + MER11C LTR ERVK 1 1057 -14 21 0 0 0 chr13 17612259 17612280 -84260889 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr13 17612561 17612586 -84260583 + (CA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr13 17613072 17613109 -84260060 + AT_rich Low_complexity Low_complexity 1 37 0 229 267 56 78 chr13 17613228 17613318 -84259851 + MIR SINE MIR 31 118 -90 593 129 65 0 chr13 17613500 17613593 -84259576 + LTR54 LTR ERV1 1 99 -411 439 275 170 10 chr13 17613596 17613833 -84259336 + MER57A LTR ERV1 108 351 -52 1560 125 129 22 chr13 17613903 17614175 -84258994 - AluSg1 SINE Alu -8 301 1 2264 125 0 0 chr13 17615119 17615430 -84257739 - AluSx SINE Alu -1 311 1 298 342 54 92 chr13 17615859 17616338 -84256831 - L2 LINE L2 0 3272 2812 2294 83 0 35 chr13 17616363 17616675 -84256494 + AluY SINE Alu 1 301 -10 1544 133 0 4 chr13 17616858 17617083 -84256086 + AluSg/x SINE Alu 69 292 -20 207 0 0 0 chr13 17617083 17617106 -84256063 + (TA)n Simple_repeat Simple_repeat 1 23 0 453 116 0 0 chr13 17617106 17617175 -84255994 + (CA)n Simple_repeat Simple_repeat 2 70 0 21 0 0 0 chr13 17617193 17617214 -84255955 + AT_rich Low_complexity Low_complexity 1 21 0 416 302 112 55 chr13 17617245 17617706 -84255463 + L1MEc LINE L1 1416 1849 -4547 2169 133 128 8 chr13 17617706 17618088 -84255081 + MSTA LTR MaLR 1 428 0 8325 188 38 7 chr13 17618088 17619690 -84253479 + MSTA-int LTR MaLR 1 1651 0 1856 175 140 8 chr13 17619690 17620068 -84253101 + MSTA LTR MaLR 1 428 0 416 302 112 55 chr13 17620068 17620316 -84252853 + L1MEc LINE L1 1848 2168 -4228 243 0 0 0 chr13 17620904 17620931 -84252238 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 68 0 0 chr13 17621015 17621059 -84252110 + AT_rich Low_complexity Low_complexity 1 44 0 3193 220 55 40 chr13 17621067 17621295 -84251874 + L1ME1 LINE L1 5211 5434 -732 1659 116 39 105 chr13 17621295 17621658 -84251511 + MER44D DNA MER2_type 1 609 0 3193 220 55 40 chr13 17621658 17622109 -84251060 + L1ME1 LINE L1 5434 5876 -290 2009 98 15 0 chr13 17622109 17622383 -84250786 + AluSg SINE Alu 1 278 -32 324 0 0 0 chr13 17622389 17622425 -84250744 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3193 220 55 40 chr13 17622425 17622680 -84250489 + L1ME1 LINE L1 5880 6161 -5 21 0 0 0 chr13 17622687 17622708 -84250461 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr13 17623280 17623303 -84249866 + (TC)n Simple_repeat Simple_repeat 2 24 0 379 0 39 0 chr13 17623487 17623538 -84249631 + (CA)n Simple_repeat Simple_repeat 2 54 0 914 262 13 4 chr13 17623707 17623940 -84249229 - MIR SINE MIR -23 239 5 31 26 0 0 chr13 17624411 17624449 -84248720 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr13 17624734 17624769 -84248400 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr13 17624845 17624882 -84248287 + AT_rich Low_complexity Low_complexity 1 37 0 193 313 157 18 chr13 17627429 17627595 -84245574 + L3 LINE CR1 205 393 -1184 278 369 21 7 chr13 17627863 17628004 -84245165 + L3 LINE CR1 981 1123 -454 203 203 89 89 chr13 17628356 17628435 -84244734 + L3 LINE CR1 1425 1503 -74 404 256 58 16 chr13 17628506 17628627 -84244542 - MIR SINE MIR -103 159 34 20000 168 39 19 chr13 17628674 17634194 -84238975 + L1MA9 LINE L1 13 5638 -1927 2553 156 57 2 chr13 17635172 17635628 -84237541 + MER31A LTR ERV1 5 485 0 1993 162 8 14 chr13 17636414 17636520 -84236649 + L1MA9 LINE L1 7105 7210 -521 342 115 0 0 chr13 17636520 17636572 -84236597 + (TA)n Simple_repeat Simple_repeat 2 53 0 1993 162 8 14 chr13 17636572 17636823 -84236346 + L1MA9 LINE L1 7210 7460 -271 405 218 75 30 chr13 17637119 17637252 -84235917 + L1MA9 LINE L1 7593 7731 0 203 246 49 49 chr13 17637526 17637587 -84235582 - MIR SINE MIR -133 129 69 23 33 0 0 chr13 17638654 17638684 -84234485 + AT_rich Low_complexity Low_complexity 1 30 0 2559 105 14 3 chr13 17638685 17639056 -84234113 - THE1C LTR MaLR 0 375 1 230 164 178 0 chr13 17639056 17639129 -84234040 - HAL1b LINE L1 -248 1100 1015 408 268 9 27 chr13 17639983 17640095 -84233074 - L2 LINE L2 -4 3309 3200 22 0 0 0 chr13 17640255 17640277 -84232892 + GC_rich Low_complexity Low_complexity 1 22 0 215 143 41 0 chr13 17640561 17640610 -84232559 + CT-rich Low_complexity Low_complexity 3 53 0 1167 76 16 10 chr13 17640599 17640928 -84232241 + (TTTC)n Simple_repeat Simple_repeat 2 506 0 305 138 0 17 chr13 17640914 17640972 -84232197 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 2072 120 0 0 chr13 17640981 17641255 -84231914 - AluSx SINE Alu -33 279 6 1723 130 14 51 chr13 17641397 17641689 -84231480 - AluJb SINE Alu -30 282 2 1544 202 0 17 chr13 17641737 17642029 -84231140 + AluJo SINE Alu 3 289 -23 352 227 242 0 chr13 17642265 17642397 -84230772 - MIR SINE MIR -27 235 72 25 0 0 0 chr13 17643964 17643989 -84229180 + AT_rich Low_complexity Low_complexity 1 25 0 653 257 36 85 chr13 17645375 17645706 -84227463 - MLT1K LTR MaLR -119 469 155 288 375 39 0 chr13 17646042 17646170 -84226999 + L2 LINE L2 3181 3313 0 301 329 169 41 chr13 17646892 17647236 -84225933 - L2 LINE L2 0 3313 2926 996 167 154 14 chr13 17647292 17647513 -84225656 - AluJo SINE Alu -11 301 50 25 51 0 0 chr13 17647553 17647592 -84225577 + AT_rich Low_complexity Low_complexity 1 39 0 451 296 122 27 chr13 17647592 17648116 -84225053 - L1MC4a LINE L1 -441 5801 5321 2207 115 0 0 chr13 17648307 17648602 -84224567 - AluSq SINE Alu -10 303 9 240 210 49 12 chr13 17648678 17648759 -84224410 - L1 LINE L1 -1106 5040 4957 22 0 0 0 chr13 17649238 17649260 -84223909 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 17649677 17649699 -84223470 + AT_rich Low_complexity Low_complexity 1 22 0 215 331 191 0 chr13 17650816 17650973 -84222196 + MIR SINE MIR 53 239 -23 458 315 94 28 chr13 17651373 17651586 -84221583 + MIR SINE MIR 2 228 -34 265 275 0 92 chr13 17651809 17651940 -84221229 - L3 LINE CR1 -495 1082 964 29 35 0 35 chr13 17652470 17652495 -84220674 + AT_rich Low_complexity Low_complexity 1 25 -31 1925 158 3 0 chr13 17652495 17652792 -84220377 + AluSq SINE Alu 1 298 -15 29 35 0 35 chr13 17652792 17652824 -84220345 + AT_rich Low_complexity Low_complexity 25 56 0 239 250 161 8 chr13 17652832 17652956 -84220213 - L3 LINE CR1 -801 776 634 669 241 35 96 chr13 17653005 17653266 -84219903 - MER112 DNA MER1_type -10 250 6 301 327 33 33 chr13 17653278 17653431 -84219738 - L3 LINE CR1 -1009 568 416 223 322 58 0 chr13 17654179 17654266 -84218903 + L2 LINE L2 2596 2687 -627 1237 216 139 29 chr13 17654696 17655124 -84218045 + MLT1C LTR MaLR 6 467 0 2153 82 3 48 chr13 17655418 17655734 -84217435 + AluY SINE Alu 1 302 -9 382 282 92 41 chr13 17656142 17656337 -84216832 - MIR SINE MIR -56 206 2 6713 142 24 6 chr13 17656808 17657879 -84215290 - Tigger7 DNA MER2_type -1396 1091 1 324 245 64 11 chr13 17657879 17657973 -84215196 + MIR SINE MIR 156 254 -8 513 280 33 50 chr13 17659689 17659871 -84213298 - L2 LINE L2 -1 3312 3134 206 404 37 0 chr13 17660287 17660396 -84212773 + MIR SINE MIR 84 196 -66 248 330 96 92 chr13 17662508 17662790 -84210379 + L2 LINE L2 2600 2882 -432 761 267 83 21 chr13 17662801 17663035 -84210134 - MIR SINE MIR 0 262 21 228 297 36 62 chr13 17663011 17663203 -84209966 + L2 LINE L2 2866 3052 -220 * 1794 148 11 3 chr13 17663203 17663615 -84209554 + AluSx SINE Alu 27 440 0 463 188 8 23 chr13 17663487 17663806 -84209363 + GA-rich Low_complexity Low_complexity 4 320 0 370 330 81 4 chr13 17663880 17664044 -84209125 + MIR SINE MIR 10 184 -76 607 301 18 46 chr13 17664382 17664770 -84208399 - L1M4 LINE L1 -2056 4090 3714 196 69 0 0 chr13 17665213 17665242 -84207927 + (TTTG)n Simple_repeat Simple_repeat 1 80 0 1466 155 3 94 chr13 17665242 17665551 -84207618 - AluJb SINE Alu -1 309 1 385 322 63 44 chr13 17666069 17666326 -84206843 - L1MEd LINE L1 -1144 1346 997 1193 183 55 126 chr13 17666369 17666789 -84206380 + MLT1B LTR MaLR 1 390 0 201 94 0 0 chr13 17666872 17666904 -84206265 + (TAG)n Simple_repeat Simple_repeat 1 32 0 339 263 113 44 chr13 17667335 17667495 -84205674 + MIR SINE MIR 21 191 -71 198 128 0 106 chr13 17667760 17667807 -84205362 - MIR SINE MIR -112 150 109 1000 146 12 0 chr13 17667970 17668135 -84205034 + MSTC LTR MaLR 1 167 -261 1192 170 85 39 chr13 17668270 17668529 -84204640 - MSTB LTR MaLR -155 271 1 1390 262 78 10 chr13 17668705 17669214 -84203955 - L2 LINE L2 -239 3074 2520 1759 96 50 27 chr13 17670007 17670268 -84202901 - AluSx SINE Alu -45 267 1 23 0 0 0 chr13 17670811 17670834 -84202335 + AT_rich Low_complexity Low_complexity 1 23 0 1093 131 6 0 chr13 17670859 17671019 -84202150 + AluSq SINE Alu 140 300 -13 229 265 0 0 chr13 17671022 17671071 -84202098 + Tigger2 DNA MER2_type 1 49 -2669 5819 155 8 4 chr13 17671180 17672412 -84200757 + L1M1 LINE L1 4303 5538 -743 5998 112 12 8 chr13 17672418 17673387 -84199782 + L1PA14 LINE L1 5182 6152 -9 277 308 10 10 chr13 17673387 17673491 -84199678 + MIR SINE MIR 158 261 -1 400 226 140 43 chr13 17674454 17674618 -84198551 - MIR SINE MIR -77 185 6 226 399 59 20 chr13 17675593 17675746 -84197423 + L2 LINE L2 2933 3091 -181 31 26 0 0 chr13 17676006 17676044 -84197125 + AT_rich Low_complexity Low_complexity 1 38 0 1408 199 24 3 chr13 17676047 17676343 -84196826 + L1MB4 LINE L1 5787 6088 -92 * 2568 246 56 13 chr13 17676341 17678182 -84194987 + L1MD2 LINE L1 4101 6082 -277 562 150 39 0 chr13 17678230 17678357 -84194812 + Charlie5 DNA MER1_type 2454 2585 -27 1953 134 70 22 chr13 17678693 17679051 -84194118 - THE1C LTR MaLR 0 375 1 2952 168 28 20 chr13 17679419 17680316 -84192853 + L1P4 LINE L1 4697 5609 -557 1742 176 0 28 chr13 17680316 17680644 -84192525 - AluSx SINE Alu 0 320 1 2952 168 28 20 chr13 17680644 17680793 -84192376 + L1P4 LINE L1 5609 5755 -411 494 248 77 63 chr13 17680903 17681287 -84191882 + L1ME2 LINE L1 2143 2492 -3723 300 28 0 0 chr13 17681285 17681321 -84191848 + L1PA6 LINE L1 10 45 -6416 * 33064 76 48 8 chr13 17681321 17686941 -84186228 + L1PA6 LINE L1 632 6475 0 917 241 67 52 chr13 17686944 17687361 -84185808 + L1ME2 LINE L1 2480 2906 -3309 2001 126 0 17 chr13 17687361 17687654 -84185515 + AluSx SINE Alu 6 293 -19 917 241 67 52 chr13 17687654 17687717 -84185452 + L1ME2 LINE L1 2906 2967 -3248 1035 217 234 36 chr13 17687721 17688463 -84184706 + L1ME2 LINE L1 3028 3916 -2299 * 2210 230 107 0 chr13 17688462 17689050 -84184119 + L1MB7 LINE L1 5534 6184 0 471 282 66 42 chr13 17689066 17689325 -84183844 + L1ME2 LINE L1 3929 4193 -2022 544 216 75 0 chr13 17689328 17689462 -84183707 - MLT1A1 LTR MaLR -221 144 1 299 24 0 24 chr13 17689471 17689512 -84183657 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 387 226 99 94 chr13 17689512 17689918 -84183251 + L1ME2 LINE L1 4465 4875 -1340 2205 248 79 44 chr13 17690019 17690296 -84182873 + L1ME2 LINE L1 5124 5390 -843 2048 131 34 0 chr13 17690296 17690587 -84182582 - AluSx SINE Alu -10 302 2 2205 248 79 44 chr13 17690587 17691339 -84181830 + L1ME2 LINE L1 5390 6211 -22 1449 189 56 25 chr13 17691728 17692014 -84181155 + AluJo SINE Alu 1 295 -17 2158 122 0 0 chr13 17692226 17692521 -84180648 + AluSx SINE Alu 1 295 -17 2145 135 3 0 chr13 17692595 17692906 -84180263 + AluSp SINE Alu 1 312 -1 243 103 0 0 chr13 17693165 17693204 -84179965 + (A)n Simple_repeat Simple_repeat 1 39 0 6218 137 32 3 chr13 17693255 17694677 -84178492 - L1PB1 LINE L1 -1 6150 4688 332 266 129 0 chr13 17694716 17694840 -84178329 + MIR SINE MIR 51 190 -72 6790 220 28 21 chr13 17695518 17697023 -84176146 + L1PA12 LINE L1 7 2616 -4968 252 163 0 0 chr13 17697024 17697067 -84176102 + AluSg/x SINE Alu 127 169 -133 12728 189 20 18 chr13 17697067 17700493 -84172676 + L1PA12 LINE L1 4144 7605 -1 24 67 0 0 chr13 17700539 17700584 -84172585 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr13 17701098 17701127 -84172042 + AT_rich Low_complexity Low_complexity 1 29 0 420 274 44 9 chr13 17701214 17701327 -84171842 + MER58A DNA MER1_type 1 117 0 1460 264 102 46 chr13 17701342 17702000 -84171169 + MER21B LTR ERV1 17 711 -152 530 211 73 0 chr13 17702118 17702227 -84170942 + MER58A DNA MER1_type 108 224 0 311 307 124 7 chr13 17702562 17702699 -84170470 - MIR3 SINE MIR -9 199 47 218 324 36 18 chr13 17703253 17703364 -84169805 - MIR SINE MIR -133 129 17 288 305 13 16 chr13 17705794 17705964 -84167205 + MIR SINE MIR 37 251 -11 183 100 0 0 chr13 17705964 17705994 -84167175 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1530 167 72 72 chr13 17706351 17706741 -84166428 + MLT1B LTR MaLR 1 390 0 271 321 91 48 chr13 17706771 17706958 -84166211 + MIR3 SINE MIR 14 208 0 967 243 72 6 chr13 17707142 17707488 -84165681 - Charlie7 DNA MER1_type -1381 1231 863 283 208 13 26 chr13 17707493 17707570 -84165599 - MLT1J LTR MaLR 0 511 436 917 191 115 32 chr13 17707754 17708032 -84165137 - MER33 DNA MER1_type -23 301 1 409 335 92 52 chr13 17708044 17708316 -84164853 + L2 LINE L2 2990 3272 0 6807 136 52 4 chr13 17709021 17710187 -84162982 - Tigger3b DNA MER2_type 0 1231 10 880 169 94 42 chr13 17711651 17711959 -84161210 - MER33 DNA MER1_type 0 324 1 414 220 0 0 chr13 17712770 17712870 -84160299 + (TATATG)n Simple_repeat Simple_repeat 4 103 0 477 118 13 0 chr13 17712928 17713004 -84160165 + AluS SINE Alu 1 77 -236 830 135 5 111 chr13 17713005 17713156 -84160013 + L1MB3 LINE L1 5996 6121 -62 1157 143 39 0 chr13 17713156 17713359 -84159810 + L1MA6 LINE L1 6090 6300 0 830 135 5 111 chr13 17713359 17713414 -84159755 + L1MB3 LINE L1 6121 6180 -3 25 65 0 0 chr13 17713528 17713574 -84159595 + AT_rich Low_complexity Low_complexity 1 46 0 843 214 33 45 chr13 17713890 17714133 -84159036 + MLT2B1 LTR ERVL 1 240 -174 327 329 33 90 chr13 17714258 17714559 -84158610 + L2 LINE L2 2915 3198 -74 296 320 148 8 chr13 17714737 17714859 -84158310 + MIR3 SINE MIR 19 157 -51 2004 157 21 3 chr13 17714942 17715280 -84157889 - MER2 DNA MER2_type 0 344 1 1962 147 41 29 chr13 17715586 17715792 -84157377 + MER2 DNA MER2_type 1 214 -131 2115 126 52 15 chr13 17715792 17716117 -84157052 - MER1B DNA MER1_type 0 337 1 1962 147 41 29 chr13 17716117 17716251 -84156918 + MER2 DNA MER2_type 214 345 0 226 278 0 0 chr13 17716740 17716794 -84156375 + MIR SINE MIR 179 232 -30 221 365 31 10 chr13 17716838 17716934 -84156235 + MIR SINE MIR 14 111 -151 320 265 0 12 chr13 17717154 17717237 -84155932 - MER34 LTR ERV1 -460 82 1 1804 145 16 13 chr13 17717258 17717561 -84155608 + AluSx SINE Alu 1 304 -8 258 32 0 0 chr13 17717636 17717667 -84155502 + (CA)n Simple_repeat Simple_repeat 2 32 0 457 253 41 20 chr13 17717722 17717868 -84155301 - MER117 DNA MER1_type -3 194 46 397 310 108 29 chr13 17717891 17718381 -84154788 - L1ME4a LINE L1 -215 5906 5378 204 40 0 0 chr13 17718574 17718599 -84154570 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2054 146 0 0 chr13 17719215 17719517 -84153652 - AluSq SINE Alu -11 302 1 299 257 76 29 chr13 17719742 17719847 -84153322 - MIR SINE MIR -71 191 82 567 266 128 44 chr13 17719859 17720085 -84153084 - MIR SINE MIR -11 251 7 272 278 20 99 chr13 17720349 17720500 -84152669 - MLT1G LTR MaLR -80 510 372 688 205 0 0 chr13 17720500 17720617 -84152552 + MER5A DNA MER1_type 61 177 -12 1264 236 76 22 chr13 17720617 17720985 -84152184 - MLT1G LTR MaLR -193 397 10 21 36 0 0 chr13 17721215 17721243 -84151926 + AT_rich Low_complexity Low_complexity 1 28 0 303 247 59 12 chr13 17723644 17723729 -84149440 - MIR SINE MIR -10 252 164 * 434 256 196 25 chr13 17723720 17723919 -84149250 + MIR SINE MIR 30 262 0 379 278 70 67 chr13 17723955 17724239 -84148930 + MARNA DNA Mariner 32 316 -270 227 323 65 0 chr13 17725030 17725092 -84148077 - L2 LINE L2 -3 3310 3245 294 384 100 26 chr13 17727235 17727654 -84145515 + L2 LINE L2 2347 2796 -518 246 230 40 80 chr13 17727969 17728069 -84145100 + L2 LINE L2 3177 3272 0 445 287 52 11 chr13 17728183 17728359 -84144810 - MIR SINE MIR -31 231 45 195 296 37 0 chr13 17728380 17728434 -84144735 + L2 LINE L2 3213 3268 -4 2299 107 0 0 chr13 17729022 17729332 -84143837 - AluSx SINE Alu -2 310 1 278 315 149 31 chr13 17729870 17730092 -84143077 + L2 LINE L2 3019 3266 -47 23 0 0 0 chr13 17730374 17730397 -84142772 + AT_rich Low_complexity Low_complexity 1 23 0 893 270 171 27 chr13 17730830 17731400 -84141769 - L2 LINE L2 -126 3187 2536 563 215 23 105 chr13 17731716 17731935 -84141234 + MER58C DNA MER1_type 3 203 -12 21 0 0 0 chr13 17732952 17732973 -84140196 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 17732994 17733022 -84140147 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr13 17734150 17734172 -84138997 + (GA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr13 17735080 17735101 -84138068 + AT_rich Low_complexity Low_complexity 1 21 0 494 299 35 15 chr13 17736121 17736318 -84136851 + L1ME LINE L1 138 338 -5867 930 261 94 36 chr13 17736409 17737149 -84136020 + L1ME LINE L1 830 1588 -4627 1922 276 81 53 chr13 17737573 17738738 -84134431 - L2 LINE L2 0 3313 2023 2011 170 18 30 chr13 17738967 17739362 -84133807 + MLT1B LTR MaLR 1 390 0 519 304 60 57 chr13 17739469 17740067 -84133102 - HAL1b LINE L1 -689 659 60 24 32 0 0 chr13 17740073 17740104 -84133065 + AT_rich Low_complexity Low_complexity 1 31 0 2373 241 81 29 chr13 17740166 17740356 -84132813 - L1MEc LINE L1 -3255 2960 2781 1710 177 3 7 chr13 17740356 17740650 -84132519 - AluJo SINE Alu -19 293 1 2373 241 81 29 chr13 17740650 17741678 -84131491 - L1MEc LINE L1 -3434 2781 1734 759 242 0 25 chr13 17741820 17742018 -84131151 - L1MB7 LINE L1 -8 6176 5984 1559 177 7 18 chr13 17742136 17742413 -84130756 - AluJo SINE Alu -24 288 15 898 231 136 8 chr13 17743118 17743369 -84129800 + MER102a DNA MER1_type 43 325 -5 228 386 20 0 chr13 17743369 17743470 -84129699 - MIR3 SINE MIR -48 160 58 181 321 60 24 chr13 17743551 17743635 -84129534 + MIR SINE MIR 103 189 -73 1939 134 0 11 chr13 17746932 17747252 -84125917 - AluSx SINE Alu 0 317 1 1615 183 3 7 chr13 17748048 17748337 -84124832 + AluJb SINE Alu 1 288 -24 213 382 10 10 chr13 17748442 17748544 -84124625 + MIR SINE MIR 11 112 -150 184 212 0 0 chr13 17749033 17749066 -84124103 - MIR SINE MIR -12 250 218 923 286 29 26 chr13 17749071 17749420 -84123749 - L1MA9 LINE L1 -25 6287 5938 461 286 9 0 chr13 17749454 17749566 -84123603 - MIR SINE MIR -140 122 10 303 330 70 35 chr13 17749479 17749709 -84123460 + MIR SINE MIR 15 252 -10 * 21 36 0 0 chr13 17750482 17750510 -84122659 + AT_rich Low_complexity Low_complexity 1 28 0 374 337 102 76 chr13 17751617 17752157 -84121012 + L2 LINE L2 2220 2773 -541 439 304 123 27 chr13 17752667 17752960 -84120209 - MLT1I LTR MaLR -9 400 80 2035 93 0 0 chr13 17753167 17753436 -84119733 + AluSc SINE Alu 36 304 -5 530 148 42 28 chr13 17756169 17756311 -84116858 - L1MA4A LINE L1 -3 6300 6157 7286 39 1 0 chr13 17756311 17757753 -84115416 - L1PA4 LINE L1 -4 6151 4709 23371 40 13 2 chr13 17757753 17760676 -84112493 + L1PA4 LINE L1 1741 4696 -1450 1307 186 4 0 chr13 17760676 17760929 -84112240 - L1MA4A LINE L1 -136 6167 5914 2897 156 21 2 chr13 17760931 17761612 -84111557 - L1MA4A LINE L1 -530 5773 5082 274 279 0 0 chr13 17761614 17761693 -84111476 + L1MA4A LINE L1 5021 5099 -1047 30 0 0 0 chr13 17761693 17761723 -84111446 + AT_rich Low_complexity Low_complexity 1 30 0 7776 15 0 0 chr13 17763065 17764483 -84108686 + L1PA2 LINE L1 4757 6174 0 306 279 22 59 chr13 17765125 17765261 -84107908 + L1ME1 LINE L1 6 136 -5934 3186 250 75 24 chr13 17765824 17767738 -84105431 + L1ME1 LINE L1 4061 6076 -24 21 36 0 0 chr13 17767741 17767769 -84105400 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 17769116 17769160 -84104009 + AT_rich Low_complexity Low_complexity 1 44 0 34 84 0 0 chr13 17769677 17769760 -84103409 + AT_rich Low_complexity Low_complexity 1 83 0 22 70 0 0 chr13 17772974 17773017 -84100152 + AT_rich Low_complexity Low_complexity 1 43 0 1089 247 51 8 chr13 17773065 17773320 -84099849 + Tigger7 DNA MER2_type 2 267 -2220 259 160 20 0 chr13 17773334 17773384 -84099785 + Tigger7 DNA MER2_type 2437 2487 0 1118 123 0 23 chr13 17773416 17773587 -84099582 - AluSg/x SINE Alu -12 300 134 2290 86 0 7 chr13 17773589 17773890 -84099279 - AluY SINE Alu -12 299 1 440 162 30 0 chr13 17774505 17774604 -84098565 + L1MB5 LINE L1 5743 5844 -330 273 252 35 48 chr13 17775075 17775218 -84097951 - L1ME LINE L1 -676 5488 5352 2937 202 40 38 chr13 17775228 17776041 -84097128 - L1MB7 LINE L1 -162 6022 5207 1064 277 101 48 chr13 17776047 17777031 -84096138 - L1M LINE L1 -735 5429 4310 259 86 0 0 chr13 17777031 17777066 -84096103 - U2 snRNA snRNA -153 35 1 1064 277 101 48 chr13 17777066 17777595 -84095574 - L1M LINE L1 -1854 4310 3810 906 321 176 29 chr13 17777595 17778872 -84094297 + L2 LINE L2 1820 3305 -8 707 305 60 4 chr13 17779337 17779681 -84093488 - LTR33 LTR ERVL -2 519 102 359 306 52 8 chr13 17779757 17779891 -84093278 - MLT1L LTR MaLR -112 503 364 204 330 85 0 chr13 17780308 17780402 -84092767 - L3 LINE CR1 -157 1420 1319 22 0 0 0 chr13 17780683 17780705 -84092464 + AT_rich Low_complexity Low_complexity 1 22 0 234 318 32 86 chr13 17781928 17782148 -84091021 + L2 LINE L2 3105 3312 -1 592 251 141 31 chr13 17782786 17783077 -84090092 - MER33 DNA MER1_type -1 323 1 228 287 32 32 chr13 17783168 17783262 -84089907 - L2 LINE L2 -1081 2233 2140 27 62 0 0 chr13 17784212 17784260 -84088909 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr13 17784424 17784446 -84088723 + AT_rich Low_complexity Low_complexity 1 22 0 1395 6 0 0 chr13 17784447 17784605 -84088564 - L1HS LINE L1 -1 6154 5997 440 83 0 0 chr13 17784600 17784660 -84088509 + L1P LINE L1 5349 5408 -747 * 37 69 0 0 chr13 17784896 17784968 -84088201 + AT_rich Low_complexity Low_complexity 1 72 0 30 0 0 0 chr13 17785023 17785053 -84088116 + AT_rich Low_complexity Low_complexity 1 30 0 292 273 50 8 chr13 17785826 17785947 -84087222 - L1ME4a LINE L1 -49 6072 5947 2065 78 0 4 chr13 17786299 17786568 -84086601 - AluY SINE Alu -4 307 40 218 274 292 0 chr13 17786835 17786948 -84086221 - MIR SINE MIR -111 151 6 3473 209 49 59 chr13 17786991 17787979 -84085190 - L1MD3 LINE L1 -6 8028 7065 462 36 0 0 chr13 17787979 17788035 -84085134 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 3473 209 49 59 chr13 17788035 17788077 -84085092 - L1MD3 LINE L1 -969 7065 7024 905 224 52 9 chr13 17788083 17788293 -84084876 - MER58A DNA MER1_type -5 219 1 1613 235 145 0 chr13 17788303 17788793 -84084376 - L1MC4 LINE L1 -1037 7005 6445 23 86 0 0 chr13 17789162 17789220 -84083949 + AT_rich Low_complexity Low_complexity 1 58 0 28 48 0 0 chr13 17789708 17789750 -84083419 + AT_rich Low_complexity Low_complexity 1 42 0 500 256 49 79 chr13 17790144 17790347 -84082822 - MIR SINE MIR 0 262 66 282 275 84 42 chr13 17790665 17790807 -84082362 + L1ME3A LINE L1 6018 6165 -5 31 68 0 0 chr13 17791162 17791221 -84081948 + AT_rich Low_complexity Low_complexity 1 59 0 34 65 0 0 chr13 17791655 17791717 -84081452 + AT_rich Low_complexity Low_complexity 1 62 0 31 26 0 0 chr13 17791888 17791926 -84081243 + AT_rich Low_complexity Low_complexity 1 38 0 38 51 0 0 chr13 17792561 17792620 -84080549 + AT_rich Low_complexity Low_complexity 1 59 0 238 355 90 37 chr13 17793189 17793510 -84079659 - L2 LINE L2 -466 2848 2511 2313 68 0 36 chr13 17793975 17794282 -84078887 - AluY SINE Alu -15 296 1 293 213 67 27 chr13 17794300 17794375 -84078794 + MER116 DNA Mariner 3 80 0 186 417 32 6 chr13 17794434 17794590 -84078579 + L3 LINE CR1 617 776 -801 1725 160 20 23 chr13 17795494 17795800 -84077369 - AluSx SINE Alu -7 305 1 4159 34 2 0 chr13 17796621 17797121 -84076048 + L1PA5 LINE L1 5650 6150 -4 696 189 0 23 chr13 17797406 17797538 -84075631 + AluSq/x SINE Alu 5 133 -180 22 70 0 0 chr13 17797828 17797871 -84075298 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr13 17798107 17798140 -84075029 + AT_rich Low_complexity Low_complexity 1 33 0 268 214 0 78 chr13 17798870 17798973 -84074196 - L1MC4 LINE L1 -1334 6708 6614 232 250 0 48 chr13 17798903 17798987 -84074182 + L1MC4 LINE L1 6624 6703 -1339 * 239 315 0 0 chr13 17798989 17799081 -84074088 - L1MC4 LINE L1 -1335 6707 6616 * 306 208 0 62 chr13 17799007 17799103 -84074066 + L1MC4 LINE L1 6614 6703 -1339 225 287 0 43 chr13 17799121 17799215 -84073954 + L1MC4 LINE L1 6614 6703 -1339 330 26 0 0 chr13 17800215 17800254 -84072915 + (CATA)n Simple_repeat Simple_repeat 2 40 0 589 155 19 0 chr13 17800291 17800394 -84072775 + FLAM_A SINE Alu 24 128 -14 1783 126 69 39 chr13 17800417 17800781 -84072388 + THE1C LTR MaLR 1 375 0 2156 100 0 10 chr13 17801030 17801329 -84071840 + AluSg SINE Alu 1 296 -14 474 278 114 13 chr13 17801720 17801947 -84071222 + HAL1b LINE L1 599 848 -500 392 312 21 64 chr13 17802346 17802479 -84070690 + L1M4 LINE L1 2189 2309 -3837 1302 43 0 0 chr13 17802479 17802642 -84070527 + L1PA3 LINE L1 5993 6155 0 392 312 21 64 chr13 17802642 17802742 -84070427 + L1M4 LINE L1 2309 2412 -3734 1418 84 133 0 chr13 17803387 17803612 -84069557 + L1PA4 LINE L1 5896 6150 -5 450 226 23 15 chr13 17803639 17803772 -84069397 + L1ME2 LINE L1 27 160 -5959 714 264 67 17 chr13 17803832 17804177 -84068992 + L1ME2 LINE L1 892 1253 -4866 23 33 0 0 chr13 17804259 17804289 -84068880 + AT_rich Low_complexity Low_complexity 1 30 0 907 130 34 0 chr13 17804492 17804638 -84068531 + L1MC1 LINE L1 6182 6332 -1 24 0 0 0 chr13 17804827 17804851 -84068318 + AT_rich Low_complexity Low_complexity 1 24 0 278 268 102 19 chr13 17805095 17805412 -84067757 + L1ME2 LINE L1 2662 3014 -3115 452 331 91 15 chr13 17805740 17806069 -84067100 + L1ME2 LINE L1 3756 4109 -2020 734 259 83 30 chr13 17806079 17806380 -84066789 + L1MB7 LINE L1 2644 2960 -3186 1845 241 118 7 chr13 17806391 17806538 -84066631 + L1MB7 LINE L1 5522 5651 -533 1975 136 0 7 chr13 17806538 17806853 -84066316 - AluSx SINE Alu 0 313 1 1845 241 118 7 chr13 17806853 17807289 -84065880 + L1MB7 LINE L1 5651 6171 -13 883 274 126 29 chr13 17807294 17808147 -84065022 + L1ME2 LINE L1 4993 5937 -288 344 339 95 29 chr13 17808461 17808975 -84064194 + L1ME4a LINE L1 2372 2919 -3210 305 322 89 23 chr13 17809846 17810060 -84063109 + L1ME4a LINE L1 4462 4689 -1440 1674 230 130 54 chr13 17810880 17811562 -84061607 + HAL1b LINE L1 256 1033 -315 2148 102 0 0 chr13 17811562 17811857 -84061312 + AluY SINE Alu 1 295 -16 1674 230 130 54 chr13 17811857 17812133 -84061036 + HAL1b LINE L1 1033 1287 -61 397 272 124 54 chr13 17812618 17812853 -84060316 + L1ME4a LINE L1 5508 5725 -379 2115 133 0 0 chr13 17812853 17813153 -84060016 - AluSx SINE Alu -12 300 1 397 272 124 54 chr13 17813153 17813450 -84059719 + L1ME4a LINE L1 5725 6077 -27 2232 125 0 0 chr13 17813451 17813756 -84059413 - AluSx SINE Alu -6 306 2 252 0 0 0 chr13 17814141 17814169 -84059000 + (T)n Simple_repeat Simple_repeat 1 28 0 1411 183 47 14 chr13 17814430 17814709 -84058460 - AluJo SINE Alu -14 288 1 986 311 101 24 chr13 17815157 17815575 -84057594 - MLT1J2 LTR MaLR 0 450 1 2266 104 7 0 chr13 17815654 17815961 -84057208 - AluSg SINE Alu -1 309 1 24 0 0 0 chr13 17816921 17816945 -84056224 + AT_rich Low_complexity Low_complexity 1 24 0 364 341 42 47 chr13 17817235 17817449 -84055720 - L3 LINE CR1 -57 1520 1308 2174 233 103 15 chr13 17817464 17818078 -84055091 + Cheshire DNA MER1_type 40 707 -1713 877 107 0 129 chr13 17818139 17818317 -84054852 + AluJb SINE Alu 157 311 -1 381 284 115 7 chr13 17818357 17818505 -84054664 + MER58B DNA MER1_type 22 185 -156 2315 160 8 15 chr13 17818529 17818928 -84054241 - MER41E LTR ERV1 -116 396 1 1482 249 65 27 chr13 17819017 17819538 -84053631 - MER41E-int LTR ERV1 -1 6675 6135 1006 350 34 27 chr13 17819560 17820376 -84052793 - HUERS-P3 LTR ERV1 -3720 4036 3215 260 176 20 0 chr13 17820934 17820985 -84052184 - HUERS-P3 LTR ERV1 -2803 2151 2100 1055 295 35 47 chr13 17821109 17821727 -84051442 - HUERS-P3 LTR ERV1 -3958 2718 1854 260 267 89 52 chr13 17821813 17821948 -84051221 - HUERS-P3 LTR ERV1 -6036 1720 1581 335 309 0 16 chr13 17822214 17822337 -84050832 - HUERS-P3 LTR ERV1 -7114 1805 1685 1300 151 41 5 chr13 17822467 17822686 -84050483 - MER41E LTR ERV1 0 512 286 468 240 147 7 chr13 17822686 17822836 -84050333 + MER58B DNA MER1_type 171 341 0 1135 167 52 0 chr13 17823136 17823346 -84049823 - MER58A DNA MER1_type -3 221 1 300 383 29 40 chr13 17823406 17823683 -84049486 - L3 LINE CR1 -304 1273 1000 296 356 92 0 chr13 17823690 17823864 -84049305 - MIR SINE MIR -1 261 72 244 333 108 0 chr13 17824352 17824463 -84048706 + L1MD3 LINE L1 6722 6844 -1151 342 0 0 0 chr13 17825191 17825229 -84047940 + (AGTAG)n Simple_repeat Simple_repeat 1 38 0 1886 157 13 7 chr13 17825231 17825537 -84047632 + AluSx SINE Alu 1 308 -4 2347 80 3 0 chr13 17825659 17825959 -84047210 + AluSp SINE Alu 1 301 -12 284 314 78 0 chr13 17826693 17826795 -84046374 - MIR3 SINE MIR -7 201 92 560 154 0 0 chr13 17827139 17827230 -84045939 + MER33 DNA MER1_type 19 109 -215 2388 67 17 3 chr13 17827431 17827730 -84045439 - AluY SINE Alu -8 303 1 222 342 18 45 chr13 17827980 17828091 -84045078 - MIR SINE MIR -46 216 109 276 226 36 24 chr13 17828363 17828447 -84044722 + MER117 DNA MER1_type 10 94 -103 424 295 85 8 chr13 17828972 17829101 -84044068 - L2 LINE L2 0 3313 3175 1677 169 3 22 chr13 17829241 17829555 -84043614 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr13 17829658 17829679 -84043490 + AT_rich Low_complexity Low_complexity 1 21 0 2093 127 13 3 chr13 17829738 17830037 -84043132 + AluSp SINE Alu 1 302 -11 27 0 0 0 chr13 17830766 17830793 -84042376 + AT_rich Low_complexity Low_complexity 1 27 0 241 287 200 7 chr13 17831058 17831208 -84041961 - L2 LINE L2 -8 3305 3127 262 318 12 0 chr13 17831810 17831895 -84041274 - MIR3 SINE MIR -11 197 112 807 249 31 0 chr13 17832363 17832556 -84040613 - MER58A DNA MER1_type -23 201 3 212 204 21 129 chr13 17832560 17832653 -84040516 + MIR3 SINE MIR 113 195 -13 569 205 99 33 chr13 17834604 17834755 -84038414 + MIR3 SINE MIR 47 207 -1 426 191 117 0 chr13 17834906 17835000 -84038169 - MIR SINE MIR -6 256 152 295 222 0 20 chr13 17836925 17837024 -84036145 + CT-rich Low_complexity Low_complexity 2 98 0 430 331 39 39 chr13 17837028 17837288 -84035881 - MLT1L LTR MaLR -355 260 1 1355 152 141 4 chr13 17837768 17838031 -84035138 + AluJo SINE Alu 1 299 -13 28 0 0 0 chr13 17838622 17838650 -84034519 + AT_rich Low_complexity Low_complexity 1 28 0 2096 142 7 0 chr13 17840072 17840382 -84032787 - AluSx SINE Alu 0 312 1 600 243 7 7 chr13 17841509 17841645 -84031524 - MER58B DNA MER1_type 0 341 206 37 81 0 0 chr13 17843242 17843328 -84029841 + AT_rich Low_complexity Low_complexity 1 86 0 21 36 0 0 chr13 17843682 17843710 -84029459 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 17844755 17844778 -84028391 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 17845538 17845560 -84027609 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr13 17845979 17846024 -84027145 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr13 17846848 17846871 -84026298 + AT_rich Low_complexity Low_complexity 1 23 0 963 256 27 16 chr13 17847023 17847281 -84025888 - MIR SINE MIR 0 262 2 30 59 0 0 chr13 17847478 17847529 -84025640 + AT_rich Low_complexity Low_complexity 1 51 0 244 314 148 30 chr13 17848068 17848237 -84024932 + MIR SINE MIR 4 192 -70 325 387 46 29 chr13 17848483 17848721 -84024448 + L2 LINE L2 2813 3054 -218 2274 92 3 0 chr13 17849190 17849483 -84023686 - AluSc SINE Alu -15 294 1 546 307 56 30 chr13 17849521 17849752 -84023417 + MIR SINE MIR 20 256 -6 317 344 104 11 chr13 17850398 17850581 -84022588 - MIR SINE MIR -61 201 2 24 0 0 0 chr13 17852234 17852258 -84020911 + AT_rich Low_complexity Low_complexity 1 24 0 543 282 75 32 chr13 17852740 17853116 -84020053 + L1ME4a LINE L1 5726 6117 -4 274 319 89 22 chr13 17853518 17853653 -84019516 + MIR SINE MIR 8 151 -111 207 88 0 0 chr13 17853925 17853959 -84019210 + (A)n Simple_repeat Simple_repeat 1 34 0 265 236 14 42 chr13 17854060 17854132 -84019037 - L2 LINE L2 0 3313 3244 258 323 93 52 chr13 17854817 17855065 -84018104 - L3 LINE CR1 -301 1276 1019 5734 122 28 12 chr13 17855073 17856153 -84017016 - L1PB1 LINE L1 -3 6148 5053 589 329 108 23 chr13 17856162 17856515 -84016654 - L3 LINE CR1 -577 1000 618 35 41 0 0 chr13 17856575 17856624 -84016545 + AT_rich Low_complexity Low_complexity 1 49 0 1094 285 44 17 chr13 17858722 17859242 -84013927 + L1MEc LINE L1 582 1115 -5281 990 203 87 87 chr13 17859248 17859699 -84013470 + MLT1E3 LTR MaLR 7 452 -172 1901 153 0 3 chr13 17860416 17860710 -84012459 + AluJo SINE Alu 1 293 -19 184 171 24 0 chr13 17861313 17861354 -84011815 + MER5C DNA MER1_type 119 160 -164 21 0 0 0 chr13 17861453 17861474 -84011695 + AT_rich Low_complexity Low_complexity 1 21 0 228 189 56 22 chr13 17861817 17861907 -84011262 + (TATAA)n Simple_repeat Simple_repeat 5 97 0 488 343 163 6 chr13 17861997 17862523 -84010646 + L2 LINE L2 2602 3215 -98 4862 161 54 12 chr13 17862547 17863301 -84009868 - L1MA8 LINE L1 -29 6262 5459 2021 131 3 6 chr13 17863301 17863613 -84009556 - AluSx SINE Alu -1 311 1 4862 161 54 12 chr13 17863613 17863850 -84009319 - L1MA8 LINE L1 -832 5459 5233 29 0 0 0 chr13 17864020 17864049 -84009120 + AT_rich Low_complexity Low_complexity 1 29 0 6063 211 70 30 chr13 17864178 17865755 -84007414 + L1M4 LINE L1 61 1700 -4842 203 175 0 0 chr13 17867452 17867492 -84005677 + T-rich Low_complexity Low_complexity 2 41 0 346 364 99 20 chr13 17868500 17868794 -84004375 - L3 LINE CR1 -877 700 384 184 286 0 18 chr13 17868868 17868924 -84004245 - MIR3 SINE MIR -31 177 123 212 271 83 90 chr13 17868955 17869088 -84004081 - MIR SINE MIR -3 259 128 2149 124 7 0 chr13 17869785 17870091 -84003078 - AluSq SINE Alu -5 308 1 282 376 27 32 chr13 17870902 17871088 -84002081 + MIR3 SINE MIR 22 206 -2 2031 86 54 0 chr13 17871914 17872194 -84000975 - AluSg1 SINE Alu -14 295 1 213 261 31 0 chr13 17872601 17872666 -84000503 + (TATG)n Simple_repeat Simple_repeat 2 68 0 348 390 6 17 chr13 17875944 17876121 -83997048 + MIR3 SINE MIR 21 195 -13 2128 287 91 11 chr13 17876966 17878046 -83995123 + L2 LINE L2 2099 3313 0 1833 147 22 0 chr13 17878384 17878656 -83994513 + Charlie3 DNA MER1_type 1 278 -2432 2599 78 6 14 chr13 17878656 17879014 -83994155 - THE1A LTR MaLR 0 355 1 738 333 111 8 chr13 17879777 17880128 -83993041 - L3 LINE CR1 -238 1339 953 381 286 48 39 chr13 17880135 17880406 -83992763 - MIR SINE MIR -2 260 24 220 426 0 0 chr13 17880644 17880759 -83992410 - L3 LINE CR1 -978 599 485 2080 136 7 0 chr13 17882335 17882643 -83990526 + AluSx SINE Alu 3 312 0 24 0 0 0 chr13 17882964 17882988 -83990181 + AT_rich Low_complexity Low_complexity 1 24 0 249 33 0 0 chr13 17884672 17884702 -83988467 + (TG)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr13 17885386 17885414 -83987755 + AT_rich Low_complexity Low_complexity 1 28 0 2011 116 0 17 chr13 17885927 17886221 -83986948 + AluSx SINE Alu 1 289 -23 234 0 0 0 chr13 17886395 17886421 -83986748 + (CA)n Simple_repeat Simple_repeat 2 27 0 1888 262 99 36 chr13 17886435 17888085 -83985084 - L1ME3A LINE L1 -8 6162 4409 2480 252 38 18 chr13 17888163 17888922 -83984247 - L1ME1 LINE L1 -28 6207 5434 859 232 84 48 chr13 17888950 17889801 -83983368 - L1ME1 LINE L1 -852 5363 4455 465 206 9 0 chr13 17889836 17889943 -83983226 + L1ME2 LINE L1 5881 5988 -176 24 32 0 0 chr13 17889998 17890029 -83983140 + AT_rich Low_complexity Low_complexity 1 31 0 778 277 59 22 chr13 17890153 17890659 -83982510 - L1ME1 LINE L1 -2566 3649 3125 925 239 43 0 chr13 17890664 17890873 -83982296 + MER58A DNA MER1_type 6 223 -1 474 229 75 43 chr13 17890875 17891063 -83982106 - L1ME1 LINE L1 -3084 3131 2938 * 2668 223 52 12 chr13 17891034 17892030 -83981139 - L1MD2 LINE L1 -440 5988 4956 711 328 67 49 chr13 17892032 17892705 -83980464 - L1ME1 LINE L1 -5711 685 1 854 318 34 25 chr13 17892732 17893258 -83979911 - L1MD2 LINE L1 -1831 4298 3768 337 290 12 12 chr13 17893314 17893559 -83979610 - L1MD2 LINE L1 -2585 3544 3258 246 39 0 59 chr13 17893578 17893629 -83979540 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 590 212 106 23 chr13 17893747 17893879 -83979290 - MER5A DNA MER1_type 0 189 47 1503 244 60 71 chr13 17893879 17894400 -83978769 - MLT2B1 LTR ERVL 0 520 6 289 196 0 0 chr13 17894405 17894456 -83978713 - MER5A DNA MER1_type -138 51 1 644 279 55 54 chr13 17894659 17895388 -83977781 - L1MD2 LINE L1 -4573 1737 971 2178 124 3 0 chr13 17895458 17895764 -83977405 + AluSg SINE Alu 1 307 -3 272 221 23 23 chr13 17896351 17896437 -83976732 - L1MD2 LINE L1 -5943 176 91 1514 264 70 68 chr13 17896679 17897241 -83975928 - L1MEc LINE L1 -3823 3118 2558 1999 131 3 13 chr13 17897241 17897547 -83975622 + AluSx SINE Alu 1 303 -9 1514 264 70 68 chr13 17897547 17898130 -83975039 - L1MEc LINE L1 -4383 2558 2010 1733 244 81 51 chr13 17898130 17898736 -83974433 - MLT1E2 LTR MaLR 0 626 3 1514 264 70 68 chr13 17898736 17898989 -83974180 - L1MEc LINE L1 -4931 2010 1759 1693 251 114 9 chr13 17899005 17899661 -83973508 - L1MEc LINE L1 -4887 1536 812 1173 296 57 35 chr13 17899767 17900332 -83972837 - L1MEc LINE L1 -5824 599 23 23 33 0 0 chr13 17900375 17900405 -83972764 + AT_rich Low_complexity Low_complexity 1 30 0 692 283 105 70 chr13 17900462 17900845 -83972324 - LTR16A LTR ERVL -54 396 1 22 0 0 0 chr13 17900845 17900867 -83972302 + AT_rich Low_complexity Low_complexity 1 22 0 608 256 0 0 chr13 17901174 17901291 -83971878 - FAM SINE Alu -65 120 4 21 36 0 0 chr13 17901670 17901698 -83971471 + AT_rich Low_complexity Low_complexity 1 28 0 1735 140 23 29 chr13 17902775 17903082 -83970087 - L1PB4 LINE L1 0 6156 5852 1825 163 0 23 chr13 17903419 17903726 -83969443 - AluJo SINE Alu -12 300 1 21 0 0 0 chr13 17903905 17903926 -83969243 + AT_rich Low_complexity Low_complexity 1 21 0 752 167 70 54 chr13 17905182 17905368 -83967801 + MER5A DNA MER1_type 1 189 0 695 250 156 0 chr13 17905999 17906191 -83966978 - MIR SINE MIR -10 252 31 24 96 0 0 chr13 17906797 17906870 -83966299 + AT_rich Low_complexity Low_complexity 1 73 0 599 271 97 14 chr13 17907818 17908025 -83965144 + MIR SINE MIR 15 238 -24 760 317 38 92 chr13 17908043 17908542 -83964627 - L2 LINE L2 -22 3291 2820 234 225 72 65 chr13 17908840 17908978 -83964191 - L2 LINE L2 -80 3233 3095 2092 82 0 34 chr13 17910801 17911150 -83962019 - AluY SINE Alu 0 339 1 23 0 0 0 chr13 17911265 17911288 -83961881 + AT_rich Low_complexity Low_complexity 1 23 0 1360 169 28 0 chr13 17911408 17911656 -83961513 + AluJo SINE Alu 39 293 -19 22 35 0 0 chr13 17913178 17913207 -83959962 + AT_rich Low_complexity Low_complexity 1 29 0 27 92 0 0 chr13 17913397 17913473 -83959696 + AT_rich Low_complexity Low_complexity 1 76 0 820 323 104 9 chr13 17913931 17914393 -83958776 + L1MC4 LINE L1 6493 6998 -1044 791 266 116 55 chr13 17915255 17915835 -83957334 + L1MC5 LINE L1 6903 7517 -444 319 256 58 58 chr13 17915931 17916052 -83957117 + L1ME3 LINE L1 5961 6081 -81 24 32 0 0 chr13 17916095 17916126 -83957043 + AT_rich Low_complexity Low_complexity 1 31 0 244 143 41 0 chr13 17916165 17916214 -83956955 + L1M4 LINE L1 4490 4540 -1606 40 37 0 0 chr13 17916240 17916294 -83956875 + AT_rich Low_complexity Low_complexity 1 54 0 320 284 136 52 chr13 17916356 17916666 -83956503 + L1M4 LINE L1 4728 5063 -1083 2980 240 65 47 chr13 17917125 17919394 -83953775 + L1MB2 LINE L1 801 3160 -3222 3382 191 49 9 chr13 17919461 17920277 -83952892 - L1 LINE L1 -1161 4985 4137 * 11500 136 139 4 chr13 17920266 17922447 -83950722 - L1PBa LINE L1 -3791 3071 598 259 354 48 20 chr13 17922933 17923080 -83950089 + L2 LINE L2 3118 3268 -4 24 0 0 0 chr13 17923618 17923642 -83949527 + AT_rich Low_complexity Low_complexity 1 24 0 981 252 67 0 chr13 17923704 17923986 -83949183 - MER46C DNA MER2_type -33 305 5 311 121 17 0 chr13 17924107 17924165 -83949004 + (CA)n Simple_repeat Simple_repeat 2 60 0 896 177 24 0 chr13 17924177 17924341 -83948828 + MER58B DNA MER1_type 173 340 -1 26 88 0 0 chr13 17924539 17924607 -83948562 + AT_rich Low_complexity Low_complexity 1 68 0 746 188 7 0 chr13 17925273 17925411 -83947758 + AluJo SINE Alu 1 139 -173 272 246 0 0 chr13 17925411 17925468 -83947701 + AluJ/monomer SINE Alu 241 297 -3 2203 187 52 2 chr13 17925672 17926116 -83947053 - L1PBa LINE L1 -6395 468 3 1052 255 42 7 chr13 17926129 17926675 -83946494 + L1MB2 LINE L1 3431 4139 -2243 2353 197 31 69 chr13 17926712 17926900 -83946269 + L1MB2 LINE L1 4879 5072 -1337 240 86 0 0 chr13 17926900 17926935 -83946234 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2353 197 31 69 chr13 17926935 17927176 -83945993 + L1MB2 LINE L1 5072 5320 -1089 2170 121 3 0 chr13 17927176 17927481 -83945688 + AluSp SINE Alu 1 306 -7 2353 197 31 69 chr13 17927481 17927791 -83945378 + L1MB2 LINE L1 5320 5587 -822 3477 159 45 13 chr13 17927838 17928534 -83944635 + L1MB2 LINE L1 5683 6400 -7 612 295 74 32 chr13 17928540 17929121 -83944048 + L1ME LINE L1 5191 5797 -365 2125 146 24 11 chr13 17930360 17930730 -83942439 - THE1C LTR MaLR 0 375 1 840 169 38 19 chr13 17931508 17931668 -83941501 + Tigger1 DNA MER2_type 1 163 -2255 * 1128 176 23 9 chr13 17931647 17931863 -83941306 + Tigger1 DNA MER2_type 2200 2418 0 826 226 98 0 chr13 17931909 17932113 -83941056 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr13 17932564 17932585 -83940584 + AT_rich Low_complexity Low_complexity 1 21 0 1688 164 26 22 chr13 17932619 17932930 -83940239 - AluJo SINE Alu 0 312 1 35 0 0 0 chr13 17933197 17933232 -83939937 + AT_rich Low_complexity Low_complexity 1 35 0 4102 218 70 104 chr13 17933583 17935399 -83937770 - MER52A LTR ERV1 0 1755 1 21 36 0 0 chr13 17935670 17935698 -83937471 + AT_rich Low_complexity Low_complexity 1 28 0 27 96 0 0 chr13 17936298 17936381 -83936788 + AT_rich Low_complexity Low_complexity 1 83 0 340 294 122 46 chr13 17936420 17936479 -83936690 - MER58C DNA MER1_type -2206 214 161 2113 106 10 0 chr13 17936479 17936772 -83936397 - AluSg SINE Alu -14 296 1 340 294 122 46 chr13 17936772 17936909 -83936260 - MER58C DNA MER1_type -2259 161 3 1692 172 114 12 chr13 17937056 17937388 -83935781 + MER47A DNA MER2_type 1 366 0 29 60 0 0 chr13 17937939 17937989 -83935180 + AT_rich Low_complexity Low_complexity 1 50 0 1382 310 62 51 chr13 17938689 17939538 -83933631 + L1MEc LINE L1 107 974 -5422 1958 134 7 0 chr13 17939538 17939822 -83933347 + AluSx SINE Alu 1 286 -26 1382 310 62 51 chr13 17939822 17940126 -83933043 + L1MEc LINE L1 974 1273 -5123 1930 236 45 48 chr13 17940317 17941084 -83932085 + L1MD2 LINE L1 5330 6115 -51 1958 241 44 2 chr13 17941090 17941616 -83931553 + L1MB3 LINE L1 4437 4984 -1162 * 11586 201 60 8 chr13 17941596 17945031 -83928138 + L1MA8 LINE L1 2493 6125 -166 2232 140 42 28 chr13 17945031 17945459 -83927710 - Tigger2a DNA MER2_type 0 434 1 11586 201 60 8 chr13 17945459 17945620 -83927549 + L1MA8 LINE L1 6125 6276 -15 4340 189 32 19 chr13 17945648 17946766 -83926403 + L1MB3 LINE L1 5052 6179 -4 958 248 23 8 chr13 17947076 17947334 -83925835 + L1MEc LINE L1 1535 1796 -4600 372 219 0 0 chr13 17947349 17947422 -83925747 - Tigger5 DNA MER2_type 0 2323 2251 360 265 164 27 chr13 17947469 17947688 -83925481 + L1M4 LINE L1 3899 4147 -1999 13473 149 15 23 chr13 17948596 17950960 -83922209 + L1P2 LINE L1 12 2357 -3789 22244 75 7 4 chr13 17951076 17954275 -83918894 + L1P2 LINE L1 2301 5506 -648 1145 46 0 20 chr13 17954275 17954421 -83918748 + L1PA6 LINE L1 6006 6153 -1 2297 100 3 0 chr13 17955745 17956054 -83917115 + AluSp SINE Alu 1 310 -3 2019 128 3 3 chr13 17956210 17956499 -83916670 + AluSq SINE Alu 1 289 -24 325 141 28 0 chr13 17956499 17956570 -83916599 + (TA)n Simple_repeat Simple_repeat 2 74 0 1122 259 47 7 chr13 17957170 17957471 -83915698 - MER58B DNA MER1_type 0 341 29 407 253 84 42 chr13 17957476 17957642 -83915527 - MER112 DNA MER1_type -9 251 79 337 318 32 16 chr13 17957694 17957820 -83915349 - MIR SINE MIR -63 145 18 23 33 0 0 chr13 17958407 17958437 -83914732 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr13 17958762 17958794 -83914375 + AT_rich Low_complexity Low_complexity 1 32 0 188 268 21 113 chr13 17960426 17960523 -83912646 + L2 LINE L2 3222 3309 -4 309 51 0 0 chr13 17961051 17961090 -83912079 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 397 321 71 9 chr13 17962026 17962214 -83910955 + MIR SINE MIR 9 205 -57 21 0 0 0 chr13 17962984 17963005 -83910164 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 17963637 17963661 -83909508 + AT_rich Low_complexity Low_complexity 1 24 0 408 264 35 76 chr13 17963903 17964047 -83909122 + MIR SINE MIR 125 262 0 31 0 0 0 chr13 17964154 17964185 -83908984 + AT_rich Low_complexity Low_complexity 1 31 0 411 20 0 0 chr13 17964437 17964486 -83908683 + L1P LINE L1 4009 4057 -2089 28 0 0 0 chr13 17964577 17964605 -83908564 + AT_rich Low_complexity Low_complexity 1 28 0 35 71 0 0 chr13 17965003 17965073 -83908096 + AT_rich Low_complexity Low_complexity 1 70 0 787 87 4 8 chr13 17969242 17969368 -83903801 + MER30B DNA MER1_type 6 110 -80 227 158 66 0 chr13 17969383 17969459 -83903710 + (TA)n Simple_repeat Simple_repeat 1 81 0 2116 94 31 0 chr13 17970400 17970688 -83902481 + AluSg SINE Alu 8 304 -6 796 221 39 63 chr13 17971219 17971473 -83901696 - L1MD2 LINE L1 -24 6335 6088 594 153 9 0 chr13 17972108 17972219 -83900950 - L1MB4 LINE L1 -1 6179 6068 1173 162 14 19 chr13 17972219 17972435 -83900734 - Tigger2 DNA MER2_type -15 2703 2489 339 25 0 0 chr13 17972455 17972495 -83900674 + (TG)n Simple_repeat Simple_repeat 2 41 0 228 67 0 0 chr13 17972494 17972524 -83900645 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1234 102 0 0 chr13 17974442 17974609 -83898560 + AluSg/x SINE Alu 131 297 -15 5789 56 6 0 chr13 17975442 17976174 -83896995 - L1PA8 LINE L1 0 6172 5437 321 68 0 0 chr13 17978602 17978646 -83894523 + (TG)n Simple_repeat Simple_repeat 1 44 0 1064 130 7 0 chr13 17978646 17978800 -83894369 - AluSg/x SINE Alu -33 279 125 27 29 0 0 chr13 17979011 17979045 -83894124 + AT_rich Low_complexity Low_complexity 1 34 0 316 279 130 57 chr13 17979120 17979557 -83893612 - HAL1 LINE L1 -120 2387 1919 817 313 66 18 chr13 17979728 17980063 -83893106 + MLT1I LTR MaLR 59 409 0 430 216 103 0 chr13 17980067 17980183 -83892986 - HAL1 LINE L1 -784 1723 1596 691 229 146 55 chr13 17980375 17980759 -83892410 - HAL1 LINE L1 -973 1534 1116 1242 163 0 0 chr13 17982709 17982975 -83890194 + (TA)n Simple_repeat Simple_repeat 1 266 0 28 48 0 0 chr13 17984337 17984379 -83888790 + AT_rich Low_complexity Low_complexity 1 42 0 33 0 0 0 chr13 17985584 17985617 -83887552 + AT_rich Low_complexity Low_complexity 1 33 0 2136 113 0 20 chr13 17985842 17986142 -83887027 + AluSq SINE Alu 1 294 -19 243 420 0 10 chr13 17986313 17986413 -83886756 - L2 LINE L2 -11 3261 3163 711 320 86 31 chr13 17986840 17987349 -83885820 - L2 LINE L2 -626 2688 2152 546 331 107 32 chr13 17987350 17987697 -83885472 + L2 LINE L2 2929 3301 -12 181 184 26 0 chr13 17987810 17987848 -83885321 - L2 LINE L2 -1385 1929 1891 201 340 0 0 chr13 17987898 17987951 -83885218 - L2 LINE L2 -86 3186 3134 228 352 207 26 chr13 17988055 17988597 -83884572 - L2 LINE L2 -1442 1872 1233 284 308 33 0 chr13 17988880 17988971 -83884198 + MIR SINE MIR 48 141 -121 31223 108 10 59 chr13 17990382 17996838 -83876331 - L1PA7 LINE L1 -4 6150 19 1938 154 0 0 chr13 17997126 17997419 -83875750 - AluJb SINE Alu -19 293 1 4579 20 2 2 chr13 17997453 17998010 -83875159 + L1PA3 LINE L1 5612 6155 0 609 110 50 0 chr13 17999583 17999683 -83873486 - L1MA3 LINE L1 0 6305 6201 847 246 40 11 chr13 17999696 17999973 -83873196 + L1ME1 LINE L1 3558 3842 -2304 3672 241 45 19 chr13 17999981 18001015 -83872154 - L1PA16 LINE L1 -1052 5094 4034 5719 138 23 1 chr13 18001018 18002052 -83871117 + L1PA16 LINE L1 5102 6157 -9 2075 227 125 47 chr13 18002074 18002644 -83870525 + L1ME1 LINE L1 3847 4516 -1630 1730 120 36 0 chr13 18002644 18002919 -83870250 + L1MA2 LINE L1 6018 6302 -2 2075 227 125 47 chr13 18002919 18003257 -83869912 + L1ME1 LINE L1 4516 4826 -1320 3347 218 61 8 chr13 18003258 18004097 -83869072 + L1ME1 LINE L1 5280 6162 -4 187 261 0 0 chr13 18004255 18004301 -83868868 + L2 LINE L2 3227 3272 0 396 226 30 131 chr13 18004399 18004598 -83868571 + MIR SINE MIR 84 262 0 199 411 82 0 chr13 18005619 18005765 -83867404 - MIR3 SINE MIR -28 180 23 206 341 178 19 chr13 18006579 18006787 -83866382 - L2 LINE L2 -340 2974 2734 182 360 67 47 chr13 18006940 18007090 -83866079 - L2 LINE L2 -660 2654 2502 6647 138 13 13 chr13 18007670 18008545 -83864624 - L1MA2 LINE L1 0 6304 5431 1948 150 0 0 chr13 18008545 18008839 -83864330 - AluSx SINE Alu -18 294 1 6647 138 13 13 chr13 18008839 18009833 -83863336 - L1MA2 LINE L1 -873 5431 4433 497 230 30 0 chr13 18009835 18009935 -83863234 + Tigger5 DNA MER2_type 2221 2323 0 2315 243 43 0 chr13 18010001 18010531 -83862638 + L1MB7 LINE L1 495 1047 -5495 306 200 88 72 chr13 18010533 18010658 -83862511 + L1MB7 LINE L1 1075 1201 -5341 3554 160 20 8 chr13 18010666 18011303 -83861866 + L1PA15 LINE L1 5517 6161 -4 6132 238 51 40 chr13 18011317 18013700 -83859469 + L1MB7 LINE L1 2506 4909 -1735 3573 193 43 23 chr13 18013696 18013800 -83859369 + L1MB3 LINE L1 5366 5466 -717 * 2575 128 26 14 chr13 18013800 18014223 -83858946 - MSTA LTR MaLR 0 428 1 3573 193 43 23 chr13 18014223 18014916 -83858253 + L1MB3 LINE L1 5466 6179 -4 4105 205 46 25 chr13 18014929 18016663 -83856506 + L1MB7 LINE L1 4914 6682 0 737 316 63 16 chr13 18017191 18017745 -83855424 + L1M4 LINE L1 2131 2710 -3436 3765 116 9 8 chr13 18017768 18018296 -83854873 + MER1A DNA MER1_type 1 529 0 21 0 0 0 chr13 18018397 18018418 -83854751 + AT_rich Low_complexity Low_complexity 1 21 0 925 284 61 56 chr13 18018457 18019569 -83853600 + L1M4 LINE L1 2909 4026 -2120 183 42 0 0 chr13 18019689 18019713 -83853456 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr13 18021358 18021387 -83851782 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 18021797 18021824 -83851345 + AT_rich Low_complexity Low_complexity 1 27 0 276 130 0 0 chr13 18021937 18021983 -83851186 + (TCC)n Simple_repeat Simple_repeat 1 46 0 999 251 107 31 chr13 18022000 18022459 -83850710 - MLT1G1 LTR MaLR -45 504 1 24 32 0 0 chr13 18022601 18022632 -83850537 + AT_rich Low_complexity Low_complexity 1 31 0 237 254 18 0 chr13 18022829 18022884 -83850285 - L3b LINE CR1 -1 1582 1527 345 152 30 0 chr13 18022892 18022958 -83850211 - MER53 DNA DNA -101 88 21 22 0 0 0 chr13 18022976 18022998 -83850171 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 18023242 18023269 -83849900 + AT_rich Low_complexity Low_complexity 1 27 0 558 214 23 54 chr13 18024577 18024809 -83848360 - MER106B DNA MER1_type 0 1059 11 25 83 0 0 chr13 18024864 18024924 -83848245 + AT_rich Low_complexity Low_complexity 1 60 0 405 0 0 0 chr13 18025004 18025049 -83848120 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 95 0 0 chr13 18025646 18025709 -83847460 + AT_rich Low_complexity Low_complexity 1 63 0 194 224 35 17 chr13 18025858 18025916 -83847253 - MIR3 SINE MIR -30 178 120 28 0 0 0 chr13 18026692 18026720 -83846449 + AT_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr13 18027186 18027212 -83845957 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2194 100 3 0 chr13 18027431 18027720 -83845449 + AluSx SINE Alu 3 292 -20 485 258 47 53 chr13 18027907 18028097 -83845072 - MIR SINE MIR -8 254 66 2117 161 45 8 chr13 18028098 18028477 -83844692 - MLT2C1 LTR ERVL 0 397 5 1824 237 35 89 chr13 18028991 18029642 -83843527 + L2 LINE L2 2131 2746 -568 948 210 36 0 chr13 18029645 18029840 -83843329 - MER3 DNA MER1_type 0 209 8 869 302 120 38 chr13 18029845 18030372 -83842797 + L2 LINE L2 2742 3313 0 26 30 0 0 chr13 18030451 18030484 -83842685 + AT_rich Low_complexity Low_complexity 1 33 0 691 248 250 36 chr13 18030979 18031391 -83841778 + L2 LINE L2 2814 3313 0 193 267 67 0 chr13 18031497 18031542 -83841627 + MIR SINE MIR 64 111 -151 2997 84 23 0 chr13 18031577 18032006 -83841163 - L1PA13 LINE L1 -1 6162 5724 235 326 31 31 chr13 18032015 18032144 -83841025 + MIR SINE MIR 102 230 -32 1143 101 0 19 chr13 18032300 18032458 -83840711 - AluSg/x SINE Alu -18 294 140 1190 109 0 0 chr13 18032559 18032715 -83840454 + AluSg/x SINE Alu 136 291 -19 673 300 40 9 chr13 18032949 18033172 -83839997 - L2 LINE L2 -413 2901 2672 366 23 0 0 chr13 18033804 18033847 -83839322 + (TG)n Simple_repeat Simple_repeat 1 43 0 427 311 48 24 chr13 18033967 18034134 -83839035 - MIR SINE MIR -70 192 22 1561 257 96 51 chr13 18034280 18035370 -83837799 + L1ME1 LINE L1 795 1929 -4477 1171 235 59 47 chr13 18035392 18035851 -83837318 + L1ME1 LINE L1 5116 5629 -853 690 263 21 16 chr13 18035843 18036033 -83837136 + L1ME1 LINE L1 6218 6408 -18 * 189 147 0 0 chr13 18036316 18036350 -83836819 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 21 0 0 0 chr13 18036435 18036456 -83836713 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 18036817 18036840 -83836329 + AT_rich Low_complexity Low_complexity 1 23 0 189 364 129 0 chr13 18037916 18038056 -83835113 - L2 LINE L2 -880 2434 2277 259 348 205 28 chr13 18038295 18038827 -83834342 - L2 LINE L2 -2158 1156 531 23 0 0 0 chr13 18040597 18040620 -83832549 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr13 18042540 18042577 -83830592 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr13 18042812 18042864 -83830305 + AT_rich Low_complexity Low_complexity 1 52 0 3840 198 88 10 chr13 18042998 18043909 -83829260 - L1 LINE L1 -1088 5760 4779 * 16285 186 22 10 chr13 18043904 18047318 -83825851 - L1 LINE L1 -3390 3458 5 1599 129 3 77 chr13 18047321 18047410 -83825759 - Tigger2a DNA MER2_type -2420 288 194 1923 141 3 0 chr13 18047410 18047720 -83825449 + AluJb SINE Alu 1 311 0 1599 129 3 77 chr13 18047720 18047939 -83825230 - Tigger2a DNA MER2_type -2514 194 2 * 2452 180 71 16 chr13 18047939 18048550 -83824619 - Tigger1 DNA MER2_type -1435 983 5 23 0 0 0 chr13 18049047 18049070 -83824099 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr13 18050021 18050046 -83823123 + AT_rich Low_complexity Low_complexity 1 25 0 1288 264 141 16 chr13 18052639 18053411 -83819758 - L1ME3 LINE L1 -3 6228 5351 236 235 94 0 chr13 18056054 18056139 -83817030 - L1ME3 LINE L1 -866 5349 5257 2095 274 87 46 chr13 18056151 18056791 -83816378 - L1ME3 LINE L1 -1002 5213 4601 2054 113 0 10 chr13 18056791 18057103 -83816066 + AluSx SINE Alu 1 309 0 2095 274 87 46 chr13 18057103 18057679 -83815490 - L1ME3 LINE L1 -1614 4601 3945 2233 105 0 0 chr13 18061150 18061454 -83811715 - AluSx SINE Alu -8 304 1 24 0 0 0 chr13 18062011 18062035 -83811134 + AT_rich Low_complexity Low_complexity 1 24 0 1581 187 6 16 chr13 18062046 18062361 -83810808 + AluJo SINE Alu 1 312 0 33 43 0 0 chr13 18062693 18062740 -83810429 + AT_rich Low_complexity Low_complexity 1 47 0 306 0 0 0 chr13 18066599 18066633 -83806536 + (TG)n Simple_repeat Simple_repeat 2 35 0 2064 150 0 0 chr13 18067623 18067930 -83805239 + AluSx SINE Alu 3 309 -3 23 0 0 0 chr13 18068772 18068795 -83804374 + AT_rich Low_complexity Low_complexity 1 23 0 719 287 0 0 chr13 18069128 18069316 -83803853 + MER46C DNA MER2_type 137 324 -14 2868 258 41 39 chr13 18071375 18071817 -83801352 - L1ME3 LINE L1 -2995 3220 2780 2388 119 94 8 chr13 18071817 18072211 -83800958 + MSTA LTR MaLR 1 428 0 2868 258 41 39 chr13 18072211 18072697 -83800472 - L1ME3 LINE L1 -3435 2780 2328 648 218 0 0 chr13 18072697 18072821 -83800348 - FLAM_A SINE Alu -8 125 2 2868 258 41 39 chr13 18072821 18073193 -83799976 - L1ME3 LINE L1 -3887 2328 1958 405 309 72 21 chr13 18073210 18073446 -83799723 - L1ME3 LINE L1 -5820 385 138 1077 323 127 10 chr13 18073520 18074239 -83798930 + L2 LINE L2 2501 3309 -4 10531 111 82 5 chr13 18074240 18075892 -83797277 - Tigger1 DNA MER2_type 0 2418 640 1752 138 82 31 chr13 18075892 18076247 -83796922 - THE1C LTR MaLR 0 375 3 3604 148 19 0 chr13 18076249 18076831 -83796338 - Tigger1 DNA MER2_type -1771 647 55 189 0 0 0 chr13 18076831 18076852 -83796317 + (A)n Simple_repeat Simple_repeat 1 21 0 272 286 170 14 chr13 18076897 18077044 -83796125 + MIR SINE MIR 63 232 -30 185 307 78 48 chr13 18077663 18077829 -83795340 + L2 LINE L2 3122 3292 -21 187 343 27 14 chr13 18077836 18077909 -83795260 - L2 LINE L2 -38 3234 3161 259 167 61 45 chr13 18078064 18078130 -83795039 + MER103 DNA DNA 8 74 -92 27 0 0 0 chr13 18078766 18078793 -83794376 + AT_rich Low_complexity Low_complexity 1 27 0 44 35 0 0 chr13 18079796 18079854 -83793315 + AT_rich Low_complexity Low_complexity 1 58 0 217 336 41 33 chr13 18079888 18080010 -83793159 - L2 LINE L2 -12 3301 3179 7582 21 6 2 chr13 18080065 18081392 -83791777 + L1PA3 LINE L1 4823 6152 -3 230 202 0 0 chr13 18081933 18081979 -83791190 - MIR SINE MIR -118 90 45 204 40 0 0 chr13 18081994 18082019 -83791150 + (CTG)n Simple_repeat Simple_repeat 2 26 0 330 297 135 0 chr13 18082021 18082132 -83791037 - MIR SINE MIR -25 237 112 23 33 0 0 chr13 18082380 18082410 -83790759 + AT_rich Low_complexity Low_complexity 1 30 0 2200 70 10 3 chr13 18082942 18083244 -83789925 - L1PB1 LINE L1 -4 6147 5844 2121 115 0 28 chr13 18083572 18083893 -83789276 - AluSx SINE Alu 0 312 1 5936 92 24 3 chr13 18084315 18086133 -83787036 + L1PA13 LINE L1 4317 6160 -3 7330 128 39 40 chr13 18087153 18088088 -83785081 - HSMAR2 DNA Mariner -1 1301 367 1655 170 3 48 chr13 18088088 18088271 -83784898 - AluJb SINE Alu -15 297 132 212 0 36 0 chr13 18088271 18088299 -83784870 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1655 170 3 48 chr13 18088299 18088426 -83784743 - AluJb SINE Alu -180 132 1 7330 128 39 40 chr13 18088426 18088785 -83784384 - HSMAR2 DNA Mariner -935 367 9 255 298 41 41 chr13 18089142 18089263 -83783906 + L2 LINE L2 3151 3271 -1 864 241 46 30 chr13 18089414 18089664 -83783505 + MIR SINE MIR 1 254 -8 538 312 38 0 chr13 18089691 18089848 -83783321 - MLT1I LTR MaLR -206 203 41 25457 48 4 5 chr13 18090862 18094930 -83778239 - L1PA5 LINE L1 -3 6151 2127 308 269 10 67 chr13 18095109 18095213 -83777956 + L2 LINE L2 3169 3266 -6 1865 182 14 20 chr13 18095449 18095483 -83777686 - MLT1A1 LTR MaLR 0 365 332 1760 110 116 12 chr13 18095483 18095810 -83777359 - MER46B DNA MER2_type 0 236 1 1865 182 14 20 chr13 18095810 18096127 -83777042 - MLT1A1 LTR MaLR -33 332 16 1811 247 45 15 chr13 18096538 18097882 -83775287 - L1MDa LINE L1 -1780 4760 3273 * 3488 204 68 4 chr13 18097878 18098753 -83774416 - L1MDa LINE L1 -909 1992 1573 44097 37 3 0 chr13 18098779 18104911 -83768258 - L1PA4 LINE L1 -3 6152 1 5112 217 122 11 chr13 18104915 18106246 -83766923 - L1MDa LINE L1 -4984 1556 116 1225 95 0 6 chr13 18106259 18106428 -83766741 - L1PB1 LINE L1 -6 6145 5978 306 0 0 0 chr13 18106429 18106463 -83766706 + (TG)n Simple_repeat Simple_repeat 2 35 0 3377 145 25 8 chr13 18106466 18107212 -83765957 - L1PB1 LINE L1 -371 5780 5017 385 200 24 12 chr13 18107211 18107296 -83765873 - L1MDa LINE L1 -6412 128 43 * 284 358 83 0 chr13 18107757 18107866 -83765303 - L2 LINE L2 -1 3271 3154 204 40 0 0 chr13 18108721 18108746 -83764423 + (TA)n Simple_repeat Simple_repeat 2 26 0 219 210 25 12 chr13 18109442 18109523 -83763646 + (TA)n Simple_repeat Simple_repeat 2 83 0 22 35 0 0 chr13 18109987 18110016 -83763153 + AT_rich Low_complexity Low_complexity 1 29 0 695 277 104 34 chr13 18111551 18111639 -83761530 + L1MC4 LINE L1 7565 7645 -397 233 0 62 0 chr13 18111639 18111671 -83761498 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1969 79 68 8 chr13 18111673 18111938 -83761231 - AluSq SINE Alu -32 281 1 695 277 104 34 chr13 18111938 18112286 -83760883 + L1MC4 LINE L1 7645 8035 -7 400 302 0 28 chr13 18112430 18112596 -83760573 + L1ME LINE L1 5513 5662 -459 2493 50 7 0 chr13 18113054 18113353 -83759816 + AluY SINE Alu 1 301 -10 236 330 78 0 chr13 18115602 18115717 -83757452 - L2 LINE L2 -1 3271 3148 555 166 12 117 chr13 18115724 18115887 -83757282 + MER20 DNA MER1_type 73 218 -1 183 360 99 41 chr13 18115887 18116129 -83757040 - L2 LINE L2 -116 3156 2901 1018 48 0 0 chr13 18116240 18116366 -83756803 + L1PA5 LINE L1 6026 6151 -3 21 0 0 0 chr13 18116472 18116493 -83756676 + AT_rich Low_complexity Low_complexity 1 21 0 2336 99 0 0 chr13 18116502 18116805 -83756364 - AluSq SINE Alu -10 303 1 218 269 0 0 chr13 18118642 18118694 -83754475 + CT-rich Low_complexity Low_complexity 1 52 0 192 189 0 0 chr13 18121595 18121632 -83751537 - L2 LINE L2 -94 3219 3183 232 308 68 55 chr13 18121955 18122101 -83751068 - MIR SINE MIR -5 257 110 188 257 129 29 chr13 18122164 18122234 -83750935 - MIR3 SINE MIR -43 165 89 437 62 15 0 chr13 18122397 18122462 -83750707 + (TA)n Simple_repeat Simple_repeat 2 67 0 5643 22 0 0 chr13 18122462 18123111 -83750058 - L1PA5 LINE L1 -20 6134 5486 215 177 16 0 chr13 18123403 18123465 -83749704 + (TA)n Simple_repeat Simple_repeat 2 64 0 360 294 65 74 chr13 18125153 18125384 -83747785 - L2 LINE L2 0 3272 3044 313 328 140 67 chr13 18125555 18126002 -83747167 - L2 LINE L2 -218 3054 2568 1720 167 3 42 chr13 18126818 18127129 -83746040 + AluJb SINE Alu 1 299 -13 2226 84 3 0 chr13 18127739 18128047 -83745122 - AluY SINE Alu -2 309 1 201 296 80 40 chr13 18128397 18128522 -83744647 + MIR SINE MIR 19 148 -114 21 0 0 0 chr13 18128862 18128883 -83744286 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr13 18130457 18130486 -83742683 + AT_rich Low_complexity Low_complexity 1 29 0 2360 91 0 0 chr13 18131204 18131513 -83741656 + AluY SINE Alu 1 309 -2 202 188 0 0 chr13 18132023 18132055 -83741114 + polypurine Low_complexity Low_complexity 2 33 0 474 264 31 0 chr13 18132319 18132448 -83740721 - MIR SINE MIR -44 218 86 216 86 0 0 chr13 18133610 18133645 -83739524 + (TA)n Simple_repeat Simple_repeat 1 35 0 3196 186 41 26 chr13 18133887 18134238 -83738931 - L1MB7 LINE L1 -10 6174 5830 2172 95 3 0 chr13 18134238 18134532 -83738637 - AluY SINE Alu -16 295 1 3196 186 41 26 chr13 18134532 18134884 -83738285 - L1MB7 LINE L1 -354 5830 5460 189 0 0 0 chr13 18135643 18135664 -83737505 + (CA)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr13 18137341 18137363 -83735806 + AT_rich Low_complexity Low_complexity 1 22 0 2670 119 27 19 chr13 18137392 18137803 -83735366 - MSTC LTR MaLR 0 428 15 215 305 222 39 chr13 18139163 18139808 -83733361 - L2 LINE L2 -509 2805 2043 1726 153 20 10 chr13 18139966 18140267 -83732902 + AluJb SINE Alu 1 304 -8 584 268 112 6 chr13 18141208 18141387 -83731782 + MIR SINE MIR 29 226 -36 196 290 58 29 chr13 18141423 18141492 -83731677 + L2 LINE L2 3180 3250 -63 22 0 0 0 chr13 18141720 18141742 -83731427 + AT_rich Low_complexity Low_complexity 1 22 0 292 314 123 83 chr13 18141883 18142087 -83731082 - L2 LINE L2 -4 3268 3057 1495 183 0 4 chr13 18143137 18143394 -83729775 - AluJo SINE Alu -56 256 1 2150 96 3 3 chr13 18143817 18144109 -83729060 + AluSg SINE Alu 1 292 -18 2609 211 39 10 chr13 18144779 18145376 -83727793 + MER90 LTR ERV1 1 614 0 2168 127 0 3 chr13 18145442 18145749 -83727420 + AluSx SINE Alu 1 306 -6 23 68 0 0 chr13 18145854 18145898 -83727271 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr13 18150271 18150299 -83722870 + AT_rich Low_complexity Low_complexity 1 28 0 531 0 0 0 chr13 18152923 18152982 -83720187 + (CTG)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr13 18156750 18156771 -83716398 + AT_rich Low_complexity Low_complexity 1 21 0 446 242 13 59 chr13 18159364 18159517 -83713652 - L1ME1 LINE L1 -7 6159 6014 369 0 0 0 chr13 18160861 18160902 -83712267 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 179 232 9 chr13 18163125 18163237 -83709932 - MIR SINE MIR -66 196 60 21 0 0 0 chr13 18163418 18163439 -83709730 + AT_rich Low_complexity Low_complexity 1 21 0 571 298 144 59 chr13 18164086 18164529 -83708640 - L3 LINE CR1 -14 1563 1083 204 291 114 25 chr13 18165405 18165484 -83707685 - L3 LINE CR1 -473 1104 1019 22 56 0 0 chr13 18165567 18165603 -83707566 + AT_rich Low_complexity Low_complexity 1 36 0 621 296 29 50 chr13 18167316 18167556 -83705613 - MIR SINE MIR -17 245 11 389 255 102 0 chr13 18167560 18167658 -83705511 + MIR SINE MIR 106 213 -49 207 279 59 15 chr13 18167690 18167758 -83705411 - MIR SINE MIR -164 98 28 994 258 151 6 chr13 18167936 18168281 -83704888 + L2 LINE L2 2209 2603 -711 218 302 149 66 chr13 18168336 18168683 -83704486 - L2 LINE L2 -1150 2164 1774 1930 98 39 3 chr13 18168683 18168969 -83704200 + L1PB1 LINE L1 5852 6147 -4 218 302 149 66 chr13 18168969 18169045 -83704124 - L2 LINE L2 -1540 1774 1706 223 392 0 0 chr13 18169652 18169749 -83703420 - L2 LINE L2 -2569 745 649 222 243 14 71 chr13 18170338 18170408 -83702761 + MIR3 SINE MIR 120 185 -23 27 29 0 0 chr13 18170507 18170541 -83702628 + AT_rich Low_complexity Low_complexity 1 34 0 37 90 0 0 chr13 18170571 18170671 -83702498 + AT_rich Low_complexity Low_complexity 1 100 0 223 316 71 10 chr13 18170803 18170901 -83702268 + L3 LINE CR1 69 172 -1405 1398 220 26 87 chr13 18171044 18171061 -83702108 + L1MEc LINE L1 2030 2046 -4169 567 76 13 0 chr13 18171061 18171140 -83702029 + MADE1 DNA Mariner 1 80 0 1398 220 26 87 chr13 18171140 18171362 -83701807 + L1MEc LINE L1 2046 2280 -3935 1647 195 23 3 chr13 18171362 18171664 -83701505 + AluJb SINE Alu 4 311 -1 1398 220 26 87 chr13 18171664 18172096 -83701073 + L1MEc LINE L1 2280 2652 -3563 316 214 0 0 chr13 18172113 18172169 -83701000 - Tigger5 DNA MER2_type 0 2323 2268 440 206 0 0 chr13 18172181 18172254 -83700915 - Tigger5 DNA MER2_type -2250 73 1 969 148 82 0 chr13 18172255 18172451 -83700718 + L1MEc LINE L1 2669 2880 -3335 301 272 82 90 chr13 18172464 18172743 -83700426 + L3 LINE CR1 1111 1387 -190 602 205 0 47 chr13 18172787 18172914 -83700255 - FLAM_A SINE Alu -12 121 1 1653 188 13 3 chr13 18172979 18173287 -83699882 + AluJo SINE Alu 1 311 -1 22 35 0 0 chr13 18174391 18174420 -83698749 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 18175322 18175352 -83697817 + AT_rich Low_complexity Low_complexity 1 30 0 203 248 137 43 chr13 18178603 18178720 -83694449 - L2 LINE L2 -4 3309 3182 390 217 0 12 chr13 18179264 18179347 -83693822 - MER63 DNA MER1_type -295 765 684 471 260 101 52 chr13 18179812 18180355 -83692814 - L1ME4a LINE L1 -2 6119 5550 253 259 37 104 chr13 18180802 18180937 -83692232 - Charlie8 DNA MER1_type -2291 126 1 1485 151 93 18 chr13 18181260 18181538 -83691631 - AluJo SINE Alu -13 299 1 30 0 0 0 chr13 18181663 18181693 -83691476 + AT_rich Low_complexity Low_complexity 1 30 0 1720 169 0 20 chr13 18182684 18182985 -83690184 - AluJo SINE Alu -7 305 11 211 243 135 40 chr13 18183347 18183421 -83689748 - MIR SINE MIR -105 103 23 319 313 99 0 chr13 18183445 18183576 -83689593 - L3 LINE CR1 -1 1576 1433 2233 230 93 47 chr13 18183624 18184367 -83688802 + L2 LINE L2 1801 2577 -737 257 368 152 6 chr13 18184417 18184588 -83688581 - L3 LINE CR1 -498 1079 884 483 305 28 7 chr13 18184665 18184806 -83688363 - MIR SINE MIR -90 172 29 523 327 101 53 chr13 18184900 18185499 -83687670 - L2 LINE L2 -453 2861 2187 3522 167 11 54 chr13 18185512 18186219 -83686950 + MER54B LTR ERVL 1 677 -116 376 297 95 39 chr13 18186287 18186519 -83686650 - L2 LINE L2 -1212 2102 1858 194 290 108 0 chr13 18186542 18186635 -83686534 - L3 LINE CR1 -731 846 744 243 206 59 15 chr13 18187247 18187315 -83685854 + GA-rich Low_complexity Low_complexity 3 73 0 399 267 102 75 chr13 18187316 18187503 -83685666 - MIR SINE MIR -13 249 58 21 82 0 0 chr13 18188356 18188405 -83684764 + AT_rich Low_complexity Low_complexity 1 49 0 2139 98 3 50 chr13 18189760 18190078 -83683091 - AluSx SINE Alu -9 303 1 29 47 0 0 chr13 18190216 18190259 -83682910 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr13 18190609 18190640 -83682529 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr13 18191192 18191241 -83681928 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 0 chr13 18192376 18192405 -83680764 + AT_rich Low_complexity Low_complexity 1 29 0 681 283 68 34 chr13 18193382 18193619 -83679550 - MIR SINE MIR -6 256 12 233 213 129 116 chr13 18194364 18194519 -83678650 + L2 LINE L2 3149 3305 -8 202 350 136 10 chr13 18194701 18194804 -83678365 - L2 LINE L2 -18 3254 3139 577 291 32 16 chr13 18194923 18195112 -83678057 - MIR SINE MIR -66 196 5 24 32 0 0 chr13 18196246 18196277 -83676892 + AT_rich Low_complexity Low_complexity 1 31 0 1795 130 57 3 chr13 18196279 18196595 -83676574 - L1MA4 LINE L1 -14 6286 5954 1296 148 84 15 chr13 18196599 18196859 -83676310 - MER1B DNA MER1_type 0 339 1 36 53 0 0 chr13 18197767 18197824 -83675345 + AT_rich Low_complexity Low_complexity 1 57 0 240 158 105 18 chr13 18198000 18198057 -83675112 - MLT1K LTR MaLR -5 583 522 2181 100 0 55 chr13 18198800 18199129 -83674040 + AluSx SINE Alu 1 311 -1 1815 140 3 17 chr13 18199229 18199522 -83673647 + MER1B DNA MER1_type 51 339 0 293 392 48 0 chr13 18199545 18199711 -83673458 - L2 LINE L2 -743 2571 2398 244 362 79 22 chr13 18199729 18199958 -83673211 - MIR SINE MIR -1 261 20 489 301 80 0 chr13 18199979 18200178 -83672991 - L2 LINE L2 -926 2388 2174 26 0 0 0 chr13 18201270 18201296 -83671873 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr13 18201837 18201867 -83671302 + AT_rich Low_complexity Low_complexity 1 30 0 2133 112 0 7 chr13 18201869 18202197 -83670972 + AluSx SINE Alu 1 312 0 329 314 18 71 chr13 18202243 18202266 -83670903 + MIR SINE MIR 28 51 -211 1291 205 144 28 chr13 18202266 18202593 -83670576 - MLT1A1 LTR MaLR 0 365 1 329 314 18 71 chr13 18202593 18202795 -83670374 + MIR SINE MIR 51 241 -21 1218 154 46 0 chr13 18202969 18203164 -83670005 + AluJb SINE Alu 6 209 -103 4615 186 264 47 chr13 18203166 18204519 -83668650 - MER52A LTR ERV1 -10 1745 1 607 163 0 0 chr13 18204519 18204611 -83668558 + AluSg/x SINE Alu 203 294 -15 634 216 76 22 chr13 18205634 18205819 -83667350 - MIR SINE MIR -1 261 67 24 0 0 0 chr13 18207036 18207060 -83666109 + AT_rich Low_complexity Low_complexity 1 24 0 314 136 227 0 chr13 18209317 18209383 -83663786 + MER69 DNA AcHobo 1 81 -2445 866 279 77 30 chr13 18209529 18209895 -83663274 - L1MC/D LINE L1 -2089 5719 5337 251 300 0 0 chr13 18210409 18210459 -83662710 - L2 LINE L2 -18 3254 3205 22 0 0 0 chr13 18210578 18210600 -83662569 + AT_rich Low_complexity Low_complexity 1 22 0 265 299 46 0 chr13 18211231 18211318 -83661851 - MIR SINE MIR -49 213 123 413 277 27 0 chr13 18211330 18211442 -83661727 + L2 LINE L2 3158 3272 0 228 35 0 0 chr13 18211901 18211930 -83661239 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 374 264 40 69 chr13 18212169 18212343 -83660826 - MIR SINE MIR -12 250 82 402 96 27 14 chr13 18213031 18213104 -83660065 - L1MC2 LINE L1 -13 6331 6258 335 78 20 0 chr13 18213236 18213287 -83659882 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 557 291 108 55 chr13 18213981 18214418 -83658751 - L2 LINE L2 0 3313 2854 3559 115 24 4 chr13 18214708 18215247 -83657922 - Tigger4(Zombi) DNA MER2_type 0 2731 2182 954 208 0 0 chr13 18215266 18215434 -83657735 - Tigger4(Zombi) DNA MER2_type -2559 172 5 371 339 78 0 chr13 18215699 18215814 -83657355 - L2 LINE L2 -32 3240 3117 2704 26 0 0 chr13 18216234 18216542 -83656627 + AluY SINE Alu 1 308 -3 183 318 136 23 chr13 18217273 18217449 -83655720 - L2 LINE L2 -5 3308 3113 220 350 38 0 chr13 18217890 18217970 -83655199 + L2 LINE L2 3172 3254 -59 381 58 0 0 chr13 18218325 18218377 -83654792 + (TG)n Simple_repeat Simple_repeat 2 53 0 732 205 19 68 chr13 18218417 18218622 -83654547 - MIR SINE MIR -8 254 60 2852 219 68 24 chr13 18219237 18220169 -83653000 - Charlie2 DNA MER1_type -35 2827 1855 21 0 0 0 chr13 18220259 18220280 -83652889 + AT_rich Low_complexity Low_complexity 1 21 0 390 308 33 55 chr13 18222642 18222824 -83650345 - L2 LINE L2 -4 3309 3132 1501 169 4 0 chr13 18222839 18223076 -83650093 + AluSx SINE Alu 58 295 -17 27 0 0 26 chr13 18223140 18223155 -83650014 + AT_rich Low_complexity Low_complexity 1 15 -22 2312 94 0 7 chr13 18223155 18223452 -83649717 - AluSg SINE Alu -15 295 1 27 0 0 26 chr13 18223452 18223474 -83649695 + AT_rich Low_complexity Low_complexity 15 37 0 186 43 0 0 chr13 18223580 18223603 -83649566 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 432 273 44 54 chr13 18223708 18223913 -83649256 + MARNA DNA Mariner 19 221 -365 337 185 0 158 chr13 18224066 18224205 -83648964 - LTR41 LTR ERVL -8 765 648 2216 121 0 3 chr13 18224205 18224503 -83648666 + AluSx SINE Alu 1 297 -15 919 224 133 8 chr13 18224590 18224853 -83648316 - LTR41 LTR ERVL -477 296 1 288 276 81 65 chr13 18225595 18225718 -83647451 - MIR SINE MIR -108 154 30 257 288 50 12 chr13 18226194 18226274 -83646895 - MLT1J LTR MaLR -193 318 236 1134 195 23 9 chr13 18226434 18226655 -83646514 + MER58A DNA MER1_type 1 224 0 668 293 88 11 chr13 18228198 18228714 -83644455 - MLT1L LTR MaLR -2 613 1 253 376 51 17 chr13 18228779 18228896 -83644273 + L2 LINE L2 3136 3256 -16 549 338 129 34 chr13 18229082 18229431 -83643738 - L3 LINE CR1 -1192 385 4 1966 153 0 3 chr13 18229489 18229789 -83643380 - AluJb SINE Alu -13 299 1 226 208 0 0 chr13 18230068 18230116 -83643053 + L2 LINE L2 3266 3313 0 2644 205 41 21 chr13 18230328 18230895 -83642274 + MER119 DNA MER1_type 6 583 0 180 77 0 0 chr13 18231212 18231238 -83641931 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 273 268 0 14 chr13 18232691 18232762 -83640407 + (CATA)n Simple_repeat Simple_repeat 2 71 0 258 405 63 0 chr13 18234720 18234831 -83638338 - L2 LINE L2 -21 3251 3134 272 337 79 0 chr13 18234965 18235066 -83638103 - L2 LINE L2 -211 3061 2953 598 239 138 6 chr13 18235183 18235350 -83637819 + MER5A DNA MER1_type 1 189 0 2389 41 0 50 chr13 18236231 18236551 -83636618 + AluY SINE Alu 1 304 -7 1166 248 35 4 chr13 18236590 18236844 -83636325 - MIR SINE MIR 0 262 1 1178 276 45 11 chr13 18237099 18237451 -83635718 - LTR16A LTR ERVL -20 430 67 700 243 50 6 chr13 18237478 18237659 -83635510 - MER5A DNA MER1_type 0 189 1 343 250 95 7 chr13 18238501 18238649 -83634520 - L1ME4a LINE L1 -1 6120 5960 299 290 11 0 chr13 18238698 18238791 -83634378 - L1ME4a LINE L1 -266 5855 5762 405 0 0 0 chr13 18239730 18239775 -83633394 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 31 44 0 0 chr13 18240207 18240252 -83632917 + AT_rich Low_complexity Low_complexity 1 45 0 1216 112 0 6 chr13 18240474 18240652 -83632517 - L1PA15 LINE L1 -3 6162 5986 213 242 144 45 chr13 18241511 18241643 -83631526 - L2 LINE L2 0 3313 3169 21 0 0 0 chr13 18242217 18242238 -83630931 + AT_rich Low_complexity Low_complexity 1 21 0 2161 89 0 0 chr13 18242678 18242989 -83630180 + AluSg SINE Alu 1 311 0 430 280 129 0 chr13 18243112 18243298 -83629871 - MLT1J1 LTR MaLR -236 210 1 475 306 107 19 chr13 18244523 18244739 -83628430 + MIR SINE MIR 28 262 0 1202 151 36 36 chr13 18245222 18245447 -83627722 - MER46A DNA MER2_type 0 236 12 821 248 51 23 chr13 18245450 18245664 -83627505 + MIR SINE MIR 16 235 -27 354 294 25 34 chr13 18246170 18246289 -83626880 - L2 LINE L2 -5 3267 3150 2174 88 0 7 chr13 18246608 18246931 -83626238 - AluSg SINE Alu 0 321 1 21 0 0 0 chr13 18247814 18247835 -83625334 + AT_rich Low_complexity Low_complexity 1 21 0 310 253 0 0 chr13 18247881 18247956 -83625213 - MLT1L LTR MaLR 0 615 541 410 347 57 0 chr13 18248024 18248200 -83624969 + MIR SINE MIR 65 250 -12 26 30 0 0 chr13 18248333 18248366 -83624803 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr13 18248474 18248497 -83624672 + AT_rich Low_complexity Low_complexity 1 23 0 477 121 0 0 chr13 18249311 18249416 -83623753 - AluSg/x SINE Alu 0 317 213 290 265 176 0 chr13 18249854 18249956 -83623213 - L2 LINE L2 0 3272 3153 395 260 31 0 chr13 18250713 18250809 -83622360 - MIR SINE MIR 0 262 164 291 161 0 0 chr13 18250978 18251034 -83622135 + A-rich Low_complexity Low_complexity 1 56 0 888 143 0 0 chr13 18251201 18251327 -83621842 + FLAM_C SINE Alu 1 126 -17 1926 101 58 0 chr13 18251355 18251631 -83621538 - AluSq SINE Alu -15 298 7 312 280 104 76 chr13 18252181 18252538 -83620631 - L1MC4 LINE L1 -145 7897 7531 1918 146 3 16 chr13 18252698 18253014 -83620155 - AluSx SINE Alu 0 312 1 1054 301 150 7 chr13 18253510 18253949 -83619220 - MLT1K LTR MaLR -16 572 71 233 261 0 34 chr13 18254017 18254136 -83619033 - L1M LINE L1 -786 5392 5278 25 0 0 0 chr13 18254237 18254262 -83618907 + AT_rich Low_complexity Low_complexity 1 25 0 231 300 89 0 chr13 18254275 18254365 -83618804 - L2 LINE L2 -1 3312 3215 213 293 182 0 chr13 18254812 18254911 -83618258 + MIR3 SINE MIR 70 186 -22 714 178 0 16 chr13 18254971 18255100 -83618069 + FLAM_C SINE Alu 1 127 -16 1508 167 79 24 chr13 18255343 18255684 -83617485 - MER46B DNA MER2_type 0 236 2 21 0 0 0 chr13 18256249 18256270 -83616899 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 18256972 18256993 -83616176 + AT_rich Low_complexity Low_complexity 1 21 0 3415 24 0 1 chr13 18257707 18258144 -83615025 - L1P1 LINE L1 -490 5665 5230 2851 43 0 0 chr13 18258146 18258517 -83614652 + L1PA2 LINE L1 5808 6178 0 2218 78 0 0 chr13 18258602 18258919 -83614250 + AluY SINE Alu 1 317 0 23 33 0 0 chr13 18259540 18259570 -83613599 + AT_rich Low_complexity Low_complexity 1 30 0 1350 186 16 51 chr13 18260912 18261085 -83612084 - AluJo SINE Alu -11 301 142 2386 99 0 0 chr13 18261085 18261397 -83611772 - AluSx SINE Alu 0 312 1 1350 186 16 51 chr13 18261397 18261535 -83611634 - AluJo SINE Alu -170 142 1 568 328 164 42 chr13 18261686 18262608 -83610561 + L2 LINE L2 1653 2686 -628 1574 153 15 37 chr13 18264480 18264806 -83608363 - MER33 DNA MER1_type 0 324 6 25 0 0 0 chr13 18265148 18265173 -83607996 + AT_rich Low_complexity Low_complexity 1 25 0 227 258 164 47 chr13 18265890 18266018 -83607151 + MIR SINE MIR 114 256 -6 261 265 214 0 chr13 18267504 18267602 -83605567 - L2 LINE L2 -8 3264 3146 265 217 103 143 chr13 18267656 18267859 -83605310 - MIR SINE MIR -28 234 40 585 309 125 57 chr13 18268880 18269402 -83603767 - L2 LINE L2 0 3272 2719 185 246 175 0 chr13 18269675 18269732 -83603437 - MIR SINE MIR -57 151 85 396 0 0 0 chr13 18271544 18271588 -83601581 + (CA)n Simple_repeat Simple_repeat 1 44 0 658 292 114 17 chr13 18272061 18272607 -83600562 - L1MC4a LINE L1 -369 5796 5272 372 94 0 0 chr13 18272675 18272728 -83600441 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr13 18273218 18273240 -83599929 + AT_rich Low_complexity Low_complexity 1 22 0 307 256 139 22 chr13 18274171 18274308 -83598861 - MIR SINE MIR -77 185 33 716 261 61 13 chr13 18274333 18274563 -83598606 - MLT1H LTR MaLR -308 241 1 307 256 139 22 chr13 18275153 18275290 -83597879 - MIR SINE MIR -77 185 33 716 261 61 13 chr13 18275315 18275545 -83597624 - MLT1H LTR MaLR -308 241 1 263 258 155 97 chr13 18275561 18275871 -83597298 - MLT1H-int LTR MaLR -18 1353 1026 271 309 75 60 chr13 18276497 18276749 -83596420 - MLT1H-int LTR MaLR -827 544 289 560 253 119 80 chr13 18276855 18277368 -83595801 - MLT1H LTR MaLR 0 549 17 2124 160 30 26 chr13 18277535 18277961 -83595208 - LTR23 LTR ERV1 0 437 10 371 272 114 19 chr13 18278183 18278341 -83594828 - MIR SINE MIR -54 208 36 1975 158 0 0 chr13 18278472 18278776 -83594393 + AluSx SINE Alu 1 304 -8 304 264 224 17 chr13 18278861 18279035 -83594134 - L2 LINE L2 0 3313 3104 2333 119 0 0 chr13 18279059 18279369 -83593800 + AluSg SINE Alu 1 310 0 781 299 27 14 chr13 18279400 18279647 -83593522 + MIR SINE MIR 3 252 -10 192 346 0 0 chr13 18280828 18280880 -83592289 - L2 LINE L2 -16 3256 3205 204 337 139 43 chr13 18282267 18282635 -83590534 + L2 LINE L2 2831 3233 -39 1077 193 0 33 chr13 18284626 18284838 -83588331 - AluJo SINE Alu -12 300 96 253 321 12 0 chr13 18284993 18285077 -83588092 - L2 LINE L2 0 3313 3229 10048 104 72 32 chr13 18285155 18286218 -83586951 - MER4-int LTR ERV1 -961 5637 4618 2428 79 13 0 chr13 18286218 18286523 -83586646 - AluY SINE Alu 0 311 3 10048 104 72 32 chr13 18286523 18287347 -83585822 - MER4-int LTR ERV1 -1980 4618 3082 4309 148 17 38 chr13 18287473 18287798 -83585371 + L1MB2 LINE L1 5417 5747 -424 2447 87 0 0 chr13 18287798 18288098 -83585071 + AluSg SINE Alu 1 300 -10 4309 148 17 38 chr13 18288098 18288538 -83584631 + L1MB2 LINE L1 5747 6166 -5 264 212 15 0 chr13 18288555 18288621 -83584548 - LTR33 LTR ERVL -53 468 402 365 256 191 35 chr13 18288657 18288856 -83584313 - LTR33 LTR ERVL -233 288 59 2242 112 0 0 chr13 18289389 18289692 -83583477 + AluSc SINE Alu 3 305 -4 3546 202 58 11 chr13 18289985 18290080 -83583089 - L1M4 LINE L1 -639 5545 5456 1406 163 104 31 chr13 18290080 18290369 -83582800 - AluJo SINE Alu -2 310 1 3546 202 58 11 chr13 18290369 18291213 -83581956 - L1M4 LINE L1 -728 5456 4576 1454 208 31 0 chr13 18291213 18291506 -83581663 + MER58B DNA MER1_type 40 341 0 221 260 240 10 chr13 18291770 18291870 -83581299 - MIR3 SINE MIR -5 203 81 2497 87 32 9 chr13 18291955 18292471 -83580698 + MER51A LTR ERV1 1 604 -30 236 302 181 17 chr13 18292645 18292761 -83580408 - MIR SINE MIR -121 141 7 1156 154 0 75 chr13 18294014 18294241 -83578928 + AluJb SINE Alu 100 309 -3 1779 206 74 66 chr13 18294265 18295194 -83577975 + L1MD1 LINE L1 4906 5845 -397 3578 194 69 20 chr13 18295236 18295936 -83577233 - L1MB7 LINE L1 -9 6175 5432 2535 36 0 26 chr13 18295936 18296245 -83576924 - AluY SINE Alu -10 301 1 3578 194 69 20 chr13 18296245 18296309 -83576860 - L1MB7 LINE L1 -752 5432 5373 5412 145 36 30 chr13 18296739 18297423 -83575746 - L1MA7 LINE L1 0 6291 5612 279 0 0 0 chr13 18297423 18297454 -83575715 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1561 157 84 0 chr13 18297454 18297715 -83575454 - AluJb SINE Alu -29 283 1 5412 145 36 30 chr13 18297715 18298047 -83575122 - L1MA7 LINE L1 -678 5613 5268 205 294 29 0 chr13 18298779 18298847 -83574322 - MIR SINE MIR -18 244 175 1287 143 55 73 chr13 18298850 18299123 -83574046 + AluJb SINE Alu 35 302 -10 2282 93 0 3 chr13 18299169 18299460 -83573709 - AluSx SINE Alu -22 290 1 196 239 65 0 chr13 18299906 18299952 -83573217 - MIR SINE MIR -58 150 102 22 0 0 0 chr13 18302230 18302252 -83570917 + AT_rich Low_complexity Low_complexity 1 22 0 923 148 19 13 chr13 18303075 18303230 -83569939 - LTR32 LTR ERVL 0 471 316 1832 170 9 32 chr13 18303235 18303576 -83569593 - LTR32 LTR ERVL -125 346 14 204 315 0 0 chr13 18303645 18303699 -83569470 - L2 LINE L2 0 3272 3219 269 329 88 7 chr13 18303758 18303895 -83569274 - L2 LINE L2 -1 3312 3165 1493 264 105 16 chr13 18303968 18304628 -83568541 - L2 LINE L2 -89 3224 2513 248 355 127 0 chr13 18304864 18304974 -83568195 + L2 LINE L2 3128 3251 -21 437 214 127 0 chr13 18305008 18305134 -83568035 + L2 LINE L2 3172 3313 0 * 1048 254 47 33 chr13 18305133 18305495 -83567674 + L2 LINE L2 2947 3313 0 271 333 42 8 chr13 18305592 18305712 -83567457 - L2 LINE L2 -13 3300 3177 34 55 0 0 chr13 18307340 18307395 -83565774 + AT_rich Low_complexity Low_complexity 1 55 0 237 281 100 43 chr13 18307464 18307833 -83565336 + L1MB8 LINE L1 3338 3754 -2392 357 93 0 0 chr13 18307843 18307897 -83565272 + (TG)n Simple_repeat Simple_repeat 1 54 0 232 274 63 11 chr13 18307927 18308022 -83565147 + L1MB8 LINE L1 4063 4162 -1984 255 318 88 30 chr13 18308131 18308436 -83564733 + L1MB8 LINE L1 4385 4707 -1439 237 273 0 0 chr13 18308689 18308755 -83564414 - L1M4 LINE L1 -1910 4236 4171 298 247 97 69 chr13 18308785 18309151 -83564018 + L1MB8 LINE L1 4885 5282 -879 1830 159 0 26 chr13 18309151 18309460 -83563709 + AluJb SINE Alu 1 301 -11 298 247 97 69 chr13 18309460 18309596 -83563573 + L1MB8 LINE L1 5282 5413 -748 947 224 33 42 chr13 18309728 18310063 -83563106 + L1MB8 LINE L1 5846 6177 -1 1827 214 44 11 chr13 18310076 18310511 -83562658 - L1MC4a LINE L1 -422 7386 6938 192 376 0 0 chr13 18310528 18310613 -83562556 - L2 LINE L2 0 3272 3188 2074 112 0 11 chr13 18311704 18312022 -83561147 + AluSx SINE Alu 1 315 0 1922 138 0 21 chr13 18313056 18313377 -83559792 - AluSx SINE Alu 0 315 1 1225 255 28 28 chr13 18313707 18313845 -83559324 + LTR16A LTR ERVL 68 205 -245 2927 81 3 18 chr13 18313845 18314226 -83558943 + THE1C LTR MaLR 1 375 0 1225 255 28 28 chr13 18314226 18314448 -83558721 + LTR16A LTR ERVL 204 428 -22 983 197 22 0 chr13 18314456 18314639 -83558530 + MER53 DNA DNA 3 189 0 466 230 0 0 chr13 18315922 18316022 -83557147 - L1MB7 LINE L1 -8 6176 6077 427 194 0 0 chr13 18316193 18316265 -83556904 + Tigger7 DNA MER2_type 273 344 -2143 * 961 129 14 7 chr13 18316260 18316407 -83556762 + Tigger7 DNA MER2_type 2439 2586 -1 2086 148 0 0 chr13 18316431 18316736 -83556433 - AluSx SINE Alu -7 305 1 275 270 56 0 chr13 18316756 18316845 -83556324 - MLT1J LTR MaLR -416 95 2 306 282 115 70 chr13 18316879 18317209 -83555960 - MLT2C1 LTR ERVL 0 397 53 * 542 241 57 19 chr13 18317083 18317241 -83555928 - MLT1E3 LTR MaLR -420 204 41 * 579 224 52 15 chr13 18317238 18317372 -83555797 - MLT2F LTR ERVL -524 139 1 203 344 58 45 chr13 18318237 18318391 -83554778 + L2 LINE L2 3113 3268 -4 240 174 0 0 chr13 18318704 18318750 -83554419 + L2 LINE L2 3226 3271 -1 397 223 19 167 chr13 18318881 18319096 -83554073 - MIR SINE MIR -14 248 66 2249 213 63 29 chr13 18319314 18319738 -83553431 + L1ME1 LINE L1 5590 6039 -127 788 192 0 0 chr13 18319738 18319868 -83553301 - FLAM_C SINE Alu -3 130 1 2249 213 63 29 chr13 18319868 18319996 -83553173 + L1ME1 LINE L1 6039 6161 -5 347 269 67 17 chr13 18321498 18321617 -83551552 + MIR SINE MIR 84 208 -54 194 324 28 0 chr13 18321662 18321733 -83551436 + MIR SINE MIR 21 93 -115 363 167 0 64 chr13 18323337 18323415 -83549754 + ORSL DNA AcHobo 1 73 -202 461 164 82 74 chr13 18323417 18323542 -83549627 - L1PB4 LINE L1 -6 6150 6023 1322 115 0 0 chr13 18323646 18323829 -83549340 - AluSg/x SINE Alu -5 305 123 180 0 0 0 chr13 18326299 18326319 -83546850 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 276 193 0 18 chr13 18326547 18326604 -83546565 + L2 LINE L2 3255 3310 -3 198 0 0 0 chr13 18326641 18326663 -83546506 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 693 171 34 0 chr13 18327996 18328113 -83545056 + FLAM_A SINE Alu 11 131 -11 258 81 0 0 chr13 18328859 18328896 -83544273 + (TG)n Simple_repeat Simple_repeat 2 38 0 555 329 24 24 chr13 18331144 18331357 -83541812 - MIR SINE MIR -4 258 46 782 146 7 36 chr13 18331505 18331709 -83541460 + FLAM_C SINE Alu 1 200 0 1552 218 106 12 chr13 18332747 18333321 -83539848 - Charlie2 DNA MER1_type -11 2851 2224 26 30 0 0 chr13 18333648 18333681 -83539488 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr13 18334607 18334642 -83538527 + AT_rich Low_complexity Low_complexity 1 35 0 1838 154 3 3 chr13 18335258 18335544 -83537625 + AluJb SINE Alu 4 289 -23 204 115 16 33 chr13 18336651 18336712 -83536457 + (TAAAA)n Simple_repeat Simple_repeat 3 62 0 29 28 0 0 chr13 18336994 18337030 -83536139 + AT_rich Low_complexity Low_complexity 1 36 0 196 328 0 0 chr13 18337716 18337777 -83535392 + MIR SINE MIR 79 139 -123 207 0 0 0 chr13 18338258 18338281 -83534888 + (A)n Simple_repeat Simple_repeat 1 23 0 411 202 43 0 chr13 18338927 18339021 -83534148 + MER5A DNA MER1_type 4 101 -88 352 158 0 0 chr13 18339128 18339185 -83533984 - L1MC5 LINE L1 -63 7898 7842 425 125 0 0 chr13 18339287 18339351 -83533818 + AluSg SINE Alu 27 90 -220 317 342 8 8 chr13 18339422 18339539 -83533630 + MIR SINE MIR 54 170 -92 2273 80 11 0 chr13 18339908 18340194 -83532975 + AluY SINE Alu 1 289 -22 203 211 0 35 chr13 18342435 18342492 -83530677 + CT-rich Low_complexity Low_complexity 3 57 0 4478 152 25 32 chr13 18343005 18343387 -83529782 + L1MB2 LINE L1 5349 5732 -439 2426 87 0 0 chr13 18343387 18343687 -83529482 + AluSg SINE Alu 1 300 -10 4478 152 25 32 chr13 18343687 18344127 -83529042 + L1MB2 LINE L1 5732 6166 -5 260 236 14 0 chr13 18344144 18344216 -83528953 - LTR33 LTR ERVL -53 468 396 378 274 194 30 chr13 18344246 18344447 -83528722 - LTR33 LTR ERVL -233 288 55 27 29 0 0 chr13 18345078 18345112 -83528057 + AT_rich Low_complexity Low_complexity 1 34 0 260 381 24 0 chr13 18346271 18346355 -83526814 - MER91A DNA MER1_type -110 86 1 24 0 0 0 chr13 18346926 18346950 -83526219 + AT_rich Low_complexity Low_complexity 1 24 0 1453 223 63 12 chr13 18347095 18347526 -83525643 + L1ME3 LINE L1 5561 6013 -149 277 146 0 0 chr13 18347565 18347613 -83525556 - L1ME3 LINE L1 -74 6088 6041 * 326 230 0 103 chr13 18347605 18347731 -83525438 + L1ME3 LINE L1 6020 6132 -30 589 234 24 18 chr13 18348071 18348238 -83524931 + MER104 DNA Tc2 7 174 -6 333 294 150 19 chr13 18348524 18348684 -83524485 - Charlie8 DNA MER1_type -2233 184 4 459 283 17 17 chr13 18348690 18348810 -83524359 + L2 LINE L2 3194 3313 0 199 222 0 0 chr13 18349243 18349279 -83523890 + MIR SINE MIR 222 257 -5 212 259 0 0 chr13 18350321 18350375 -83522794 - L2 LINE L2 -4 3309 3256 821 243 99 0 chr13 18352649 18352871 -83520298 + MIR SINE MIR 8 251 -11 377 244 13 13 chr13 18353281 18353359 -83519810 - L2 LINE L2 -6 3266 3189 2252 104 7 0 chr13 18353413 18353710 -83519459 - AluSg SINE Alu -11 299 1 1558 178 51 7 chr13 18353730 18354006 -83519163 - AluJo SINE Alu -21 291 4 243 0 0 0 chr13 18354026 18354053 -83519116 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr13 18354329 18354356 -83518813 + AT_rich Low_complexity Low_complexity 1 27 0 1435 104 22 5 chr13 18354656 18354878 -83518291 + L1PA10 LINE L1 5943 6168 0 258 274 11 53 chr13 18355839 18355934 -83517235 + L2 LINE L2 3215 3305 -8 391 318 48 8 chr13 18356092 18356218 -83516951 - L2 LINE L2 -4 3309 3179 1672 103 0 0 chr13 18356336 18356559 -83516610 + AluSg/x SINE Alu 72 294 -18 433 274 52 19 chr13 18357251 18357463 -83515706 - L1MCc LINE L1 -6180 243 25 394 59 0 0 chr13 18358049 18358100 -83515069 + L1PA6 LINE L1 6002 6052 -102 2457 45 0 0 chr13 18358200 18358491 -83514678 - AluY SINE Alu -20 291 1 2205 125 0 0 chr13 18358823 18359128 -83514041 - AluSx SINE Alu -7 305 1 26 50 0 0 chr13 18360962 18361002 -83512167 + AT_rich Low_complexity Low_complexity 1 40 0 208 325 113 12 chr13 18361677 18361757 -83511412 - L2 LINE L2 0 3272 3185 21 57 0 0 chr13 18363424 18363459 -83509710 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr13 18363551 18363581 -83509588 + AT_rich Low_complexity Low_complexity 1 30 0 238 318 118 0 chr13 18363964 18364049 -83509120 - L2 LINE L2 -22 3291 3197 197 243 135 0 chr13 18366407 18366481 -83506688 + MIR SINE MIR 151 234 -28 21 0 0 0 chr13 18368164 18368185 -83504984 + AT_rich Low_complexity Low_complexity 1 21 0 3368 135 49 22 chr13 18368487 18369116 -83504053 - L1MA4 LINE L1 -6 6294 5649 25 0 0 0 chr13 18369215 18369240 -83503929 + AT_rich Low_complexity Low_complexity 1 25 0 399 271 83 44 chr13 18370117 18370298 -83502871 + MIR SINE MIR 49 236 -26 438 248 66 15 chr13 18370337 18370474 -83502695 - MIR SINE MIR -45 217 74 2038 127 0 3 chr13 18371078 18371377 -83501792 - AluSq SINE Alu -15 298 1 204 345 0 0 chr13 18371411 18371466 -83501703 + MIR SINE MIR 35 89 -119 200 267 13 27 chr13 18371459 18371534 -83501635 - L2 LINE L2 -330 2942 2869 * 195 100 0 0 chr13 18373763 18373793 -83499376 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 220 327 0 20 chr13 18374070 18374171 -83498998 + GA-rich Low_complexity Low_complexity 2 100 0 23 0 0 0 chr13 18374837 18374860 -83498309 + AT_rich Low_complexity Low_complexity 1 23 0 276 207 179 28 chr13 18375457 18375602 -83497567 + Charlie7 DNA MER1_type 2429 2595 -17 203 273 26 65 chr13 18379166 18379243 -83493926 - MER5A DNA MER1_type -1 188 115 2124 112 3 20 chr13 18379611 18379915 -83493254 - AluSx SINE Alu -13 299 1 454 318 48 63 chr13 18381463 18381715 -83491454 + MLT1K LTR MaLR 156 403 -185 249 281 30 52 chr13 18381985 18382120 -83491049 + L1ME3A LINE L1 5596 5727 -435 678 212 46 79 chr13 18382136 18382377 -83490792 + L1ME3A LINE L1 5931 6163 -7 1536 168 84 4 chr13 18382652 18382926 -83490243 - MLT1A1 LTR MaLR 0 365 70 350 315 0 0 chr13 18382936 18383047 -83490122 + MIR SINE MIR 32 142 -66 2219 127 10 0 chr13 18383412 18383720 -83489449 - AluSx SINE Alu -1 311 1 1544 107 17 34 chr13 18383768 18384002 -83489167 - MER30 DNA MER1_type 0 230 1 211 252 26 61 chr13 18384279 18384394 -83488775 - MIR3 SINE MIR -32 176 66 485 201 35 6 chr13 18384937 18385106 -83488063 + (CATA)n Simple_repeat Simple_repeat 3 176 0 188 196 0 36 chr13 18385141 18385197 -83487972 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 1057 234 145 37 chr13 18385197 18385507 -83487662 - MLT2B1 LTR ERVL -40 480 110 1885 142 3 28 chr13 18385507 18385795 -83487374 - AluSx SINE Alu -30 282 2 1057 234 145 37 chr13 18385795 18385912 -83487257 - MLT2B1 LTR ERVL -410 110 7 2340 119 0 0 chr13 18386999 18387353 -83485816 + AluSx SINE Alu 1 354 0 294 196 0 0 chr13 18387656 18387707 -83485462 + Tigger5 DNA MER2_type 1 51 -2272 363 216 34 11 chr13 18387714 18387802 -83485367 + Tigger5 DNA MER2_type 2234 2323 0 1880 98 0 16 chr13 18388129 18388375 -83484794 + AluSx SINE Alu 12 253 -59 412 241 48 54 chr13 18388402 18388568 -83484601 - MIR SINE MIR -16 246 82 2142 113 0 30 chr13 18388899 18389200 -83483969 - AluSx SINE Alu -20 292 1 226 349 0 0 chr13 18389318 18389404 -83483765 - L2 LINE L2 0 3313 3228 2611 135 114 27 chr13 18390625 18391085 -83482084 - LTR12 LTR ERV1 -227 487 1 1533 168 25 7 chr13 18391085 18391359 -83481810 - AluJo SINE Alu -33 279 1 1992 112 3 26 chr13 18391372 18391677 -83481492 - AluY SINE Alu -13 298 1 1930 136 0 50 chr13 18392124 18392447 -83480722 - AluJb SINE Alu -5 307 1 278 239 28 0 chr13 18393221 18393292 -83479877 + L1MEd LINE L1 6 78 -6041 458 325 116 56 chr13 18393507 18393990 -83479179 + L1MEd LINE L1 329 840 -5279 3101 167 70 27 chr13 18394036 18394623 -83478546 - LTR9 LTR ERV1 0 612 1 240 278 8 23 chr13 18394636 18394769 -83478400 + A-rich Low_complexity Low_complexity 4 134 0 2016 144 36 41 chr13 18395002 18395511 -83477658 + MLT2A2 LTR ERVL 1 416 -37 1899 116 90 0 chr13 18395512 18395789 -83477380 + AluSg SINE Alu 1 302 -8 1360 273 37 8 chr13 18395890 18396268 -83476901 - L1M1 LINE L1 -7046 519 131 2139 129 0 16 chr13 18396274 18396591 -83476578 - AluSx SINE Alu 0 312 1 690 212 20 85 chr13 18396655 18396854 -83476315 - MLT1B LTR MaLR -186 188 3 1603 184 25 69 chr13 18398297 18398705 -83474464 + MLT1B LTR MaLR 1 390 0 1342 199 108 72 chr13 18398935 18399378 -83473791 + MLT1C LTR MaLR 1 459 -8 232 175 0 0 chr13 18399773 18399813 -83473356 + MLT1B LTR MaLR 347 386 -4 198 240 0 40 chr13 18400223 18400273 -83472896 + L2 LINE L2 3225 3272 0 430 241 209 37 chr13 18400316 18400767 -83472402 - MLT1F LTR MaLR -5 588 4 2066 110 39 0 chr13 18401068 18401350 -83471819 - AluSx SINE Alu -19 293 1 1573 174 3 38 chr13 18402876 18403192 -83469977 + AluJo SINE Alu 1 305 -7 693 173 0 8 chr13 18406149 18406276 -83466893 + FLAM_C SINE Alu 3 128 -5 2122 135 3 3 chr13 18406287 18406599 -83466570 + AluSx SINE Alu 1 312 0 1136 214 158 15 chr13 18406908 18407315 -83465854 + MLT2B1 LTR ERVL 1 464 0 980 196 25 15 chr13 18407476 18407675 -83465494 + MLT1D LTR MaLR 8 208 -297 2218 176 41 77 chr13 18407688 18408309 -83464860 + L1M4 LINE L1 4996 5582 -602 309 51 0 0 chr13 18408309 18408348 -83464821 + (TG)n Simple_repeat Simple_repeat 1 39 0 2218 176 41 77 chr13 18408348 18408544 -83464625 + L1M4 LINE L1 5582 5784 -400 1368 111 0 16 chr13 18408605 18408794 -83464375 - AluSg/x SINE Alu -13 299 114 563 218 0 6 chr13 18408946 18409120 -83464049 + (CA)n Simple_repeat Simple_repeat 2 174 0 564 191 17 12 chr13 18409143 18409316 -83463853 + (CATA)n Simple_repeat Simple_repeat 1 174 0 563 226 3 0 chr13 18409321 18409648 -83463521 + (CA)n Simple_repeat Simple_repeat 1 328 0 378 222 0 17 chr13 18409681 18409857 -83463312 + (CA)n Simple_repeat Simple_repeat 1 173 0 420 258 0 0 chr13 18409876 18410054 -83463115 + (CA)n Simple_repeat Simple_repeat 2 179 0 612 228 0 7 chr13 18410074 18410378 -83462791 + (CA)n Simple_repeat Simple_repeat 1 302 0 560 215 12 0 chr13 18410383 18410555 -83462614 + (CATA)n Simple_repeat Simple_repeat 4 177 0 516 240 0 0 chr13 18410597 18410776 -83462393 + (CA)n Simple_repeat Simple_repeat 2 180 0 252 0 0 0 chr13 18412031 18412059 -83461110 + (A)n Simple_repeat Simple_repeat 1 28 0 340 280 77 7 chr13 18412852 18412995 -83460174 + L2 LINE L2 2926 3078 -194 720 142 59 16 chr13 18413681 18413934 -83459235 + CT-rich Low_complexity Low_complexity 1 264 0 202 128 64 0 chr13 18413946 18413993 -83459176 + CT-rich Low_complexity Low_complexity 2 51 0 293 299 0 19 chr13 18414744 18414851 -83458318 + 7SK RNA RNA 1 105 -88 734 93 107 0 chr13 18417902 18418042 -83455127 - MER41B LTR ERV1 -480 155 1 2178 162 58 75 chr13 18418042 18418574 -83454595 + MER34C LTR ERV1 63 585 0 1456 203 110 42 chr13 18418685 18419138 -83454031 - LTR29 LTR ERV1 -2 620 137 300 289 0 0 chr13 18419143 18419219 -83453950 - MER34 LTR ERV1 -446 96 21 1305 193 26 30 chr13 18419376 18419551 -83453618 + MER49 LTR ERV1 25 200 -723 4300 78 9 2 chr13 18419551 18420101 -83453068 - MER41A LTR ERV1 0 554 1 1305 193 26 30 chr13 18420101 18420195 -83452974 + MER49 LTR ERV1 200 293 -630 1601 200 31 31 chr13 18420231 18420586 -83452583 + MER4D LTR ERV1 549 903 0 2014 183 17 32 chr13 18420860 18421163 -83452006 - L1MB7 LINE L1 0 7603 7308 3638 151 48 5 chr13 18421163 18421772 -83451397 - MER41B LTR ERV1 0 635 1 2014 183 17 32 chr13 18421772 18421932 -83451237 - L1MB7 LINE L1 -295 7308 7147 702 136 24 8 chr13 18422370 18422495 -83450674 - L1MB7 LINE L1 -522 7075 6949 268 189 86 6 chr13 18422496 18422582 -83450587 - L1MB7 LINE L1 -715 6878 6793 1427 208 49 3 chr13 18422621 18422909 -83450260 - AluJo SINE Alu -11 301 1 3266 149 61 14 chr13 18423563 18423652 -83449517 - LTR31 LTR ERV1 0 619 536 522 31 0 0 chr13 18423652 18423716 -83449453 + (CAAG)n Simple_repeat Simple_repeat 1 64 0 3266 149 61 14 chr13 18423716 18424217 -83448952 - LTR31 LTR ERV1 -83 536 1 4972 106 1 16 chr13 18424293 18425029 -83448140 - L1MA3 LINE L1 -1 6304 5580 6721 206 51 17 chr13 18425129 18426765 -83446404 - L1MB7 LINE L1 -912 6653 5075 3901 101 28 14 chr13 18426765 18427278 -83445891 + L1PB1 LINE L1 5571 6100 -51 2092 120 43 7 chr13 18427278 18427578 -83445591 + AluSx SINE Alu 1 311 -1 3901 101 28 14 chr13 18427578 18427630 -83445539 + L1PB1 LINE L1 6100 6150 -1 6721 206 51 17 chr13 18427630 18428092 -83445077 - L1MB7 LINE L1 -2490 5075 4630 2417 160 34 14 chr13 18428092 18428510 -83444659 - MSTB LTR MaLR 0 426 1 6721 206 51 17 chr13 18428510 18430339 -83442830 - L1MB7 LINE L1 -2935 4630 2570 637 302 143 47 chr13 18430424 18430777 -83442392 + L2 LINE L2 2260 2578 -735 3523 142 38 28 chr13 18430777 18431381 -83441788 - MER4B LTR ERV1 0 610 1 637 302 143 47 chr13 18431381 18431476 -83441693 + L2 LINE L2 2578 2663 -650 3261 146 66 9 chr13 18431476 18432039 -83441130 - LTR49 LTR ERV1 0 595 1 637 302 143 47 chr13 18432039 18432543 -83440626 + L2 LINE L2 2663 3313 0 198 367 102 9 chr13 18432588 18432814 -83440355 - L2 LINE L2 -565 2749 2503 2674 159 19 80 chr13 18432843 18433408 -83439761 + LTR8 LTR ERV1 158 688 -3 209 333 21 21 chr13 18433466 18433562 -83439607 - L2 LINE L2 -929 2385 2290 3577 128 10 2 chr13 18433634 18434144 -83439025 - MER75 DNA T2_type 0 514 1 2183 306 68 17 chr13 18434335 18434865 -83438304 + MER89 LTR ERV1 3 559 0 324 313 31 57 chr13 18437015 18437149 -83436020 - Charlie2 DNA MER1_type -2641 221 94 2214 123 7 0 chr13 18437149 18437457 -83435712 - AluSx SINE Alu -2 310 1 324 313 31 57 chr13 18437457 18437549 -83435620 - Charlie2 DNA MER1_type -2768 94 1 322 269 170 6 chr13 18437614 18437785 -83435384 + MIR SINE MIR 5 203 -59 2390 100 3 0 chr13 18437869 18438180 -83434989 + AluSx SINE Alu 1 312 0 541 329 38 14 chr13 18438702 18438915 -83434254 + MIR SINE MIR 20 237 -25 458 209 9 0 chr13 18438915 18439020 -83434149 + L1M4 LINE L1 4109 4214 -1932 189 107 0 0 chr13 18439884 18439912 -83433257 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 336 239 0 54 chr13 18440080 18440172 -83432997 + MLT1B LTR MaLR 1 87 -287 3053 146 35 28 chr13 18440178 18440975 -83432194 - MER21A LTR ERV1 -6 925 1 1017 231 50 43 chr13 18440975 18441274 -83431895 + MLT1B LTR MaLR 89 389 -1 2130 118 16 7 chr13 18441689 18441993 -83431176 - AluSx SINE Alu -5 307 1 520 152 8 104 chr13 18442509 18442578 -83430591 + L1MB5 LINE L1 6056 6109 -65 2259 111 0 0 chr13 18442578 18442867 -83430302 - AluSx SINE Alu -23 289 1 520 152 8 104 chr13 18442867 18442922 -83430247 + L1MB5 LINE L1 6109 6168 -6 189 0 0 0 chr13 18442922 18442943 -83430226 + (T)n Simple_repeat Simple_repeat 1 21 0 22 56 0 0 chr13 18446332 18446368 -83426801 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr13 18446919 18446965 -83426204 + AT_rich Low_complexity Low_complexity 1 46 0 293 197 16 0 chr13 18447331 18447392 -83425777 - L1ME4a LINE L1 -71 6050 5989 2294 79 3 25 chr13 18447658 18447974 -83425195 + AluY SINE Alu 1 309 -2 280 246 109 69 chr13 18448063 18448238 -83424931 + L2 LINE L2 2205 2386 -928 361 363 70 18 chr13 18448769 18448818 -83424351 + L2 LINE L2 3078 3123 -149 2183 174 9 0 chr13 18448818 18449163 -83424006 + MER7A DNA MER2_type 1 346 0 361 363 70 18 chr13 18449163 18449284 -83423885 + L2 LINE L2 3123 3257 -15 215 293 93 0 chr13 18449943 18450018 -83423151 + L2 LINE L2 3232 3313 0 227 290 190 0 chr13 18451516 18451616 -83421553 - L2 LINE L2 0 3313 3195 1317 183 5 9 chr13 18451661 18451885 -83421284 - MER58A DNA MER1_type -1 223 1 337 302 84 11 chr13 18452185 18452364 -83420805 - MIR SINE MIR -50 212 21 870 126 68 5 chr13 18452420 18452610 -83420559 - AluSq SINE Alu -22 291 90 517 88 34 1 chr13 18453228 18453467 -83419702 + AluSq SINE Alu 1 279 -34 180 0 0 0 chr13 18453476 18453496 -83419673 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 820 290 122 52 chr13 18453594 18454118 -83419051 - MLT1K LTR MaLR -3 585 25 369 362 73 6 chr13 18455057 18455234 -83417935 + MIR3 SINE MIR 5 193 -15 2575 70 3 0 chr13 18456023 18456335 -83416834 + AluSp SINE Alu 1 313 0 423 295 70 0 chr13 18457131 18457260 -83415909 - MIR SINE MIR -75 187 50 564 167 0 9 chr13 18458354 18458462 -83414707 + MER50 LTR ERV1 499 605 -129 1982 107 4 18 chr13 18459886 18460158 -83413011 + AluSx SINE Alu 1 268 -44 1791 149 10 34 chr13 18461791 18462087 -83411082 + AluJo SINE Alu 1 289 -23 217 226 95 36 chr13 18462286 18462370 -83410799 + L2 LINE L2 3175 3263 -9 350 308 142 24 chr13 18464164 18464333 -83408836 + MIR SINE MIR 3 191 -71 291 226 16 0 chr13 18466854 18466916 -83406253 - MIR3 SINE MIR -50 158 96 236 298 8 66 chr13 18469004 18469125 -83404044 - L3 LINE CR1 -40 1537 1424 1995 67 85 4 chr13 18469524 18469794 -83403375 + L1MA3 LINE L1 6010 6301 -4 2082 127 10 0 chr13 18469796 18470087 -83403082 - AluSx SINE Alu -18 294 1 22 0 0 0 chr13 18470087 18470109 -83403060 + AT_rich Low_complexity Low_complexity 1 22 0 258 276 60 60 chr13 18470492 18470626 -83402543 - MLT1J LTR MaLR -48 463 330 514 196 29 65 chr13 18470839 18470977 -83402192 - MER20 DNA MER1_type -86 133 1 241 313 33 58 chr13 18471625 18471865 -83401304 - Tigger2 DNA MER2_type -1468 1250 1017 2876 168 27 35 chr13 18472019 18472583 -83400586 + MER89 LTR ERV1 1 559 0 1230 250 128 25 chr13 18473012 18473404 -83399765 - MLT1D LTR MaLR -17 488 57 222 333 103 0 chr13 18473500 18473578 -83399591 + L2 LINE L2 2720 2805 -509 186 328 30 60 chr13 18473627 18473761 -83399408 + L2 LINE L2 2896 3025 -247 * 586 286 124 32 chr13 18473759 18474074 -83399095 - L2 LINE L2 0 3313 2970 398 296 162 42 chr13 18474076 18474184 -83398985 - L2 LINE L2 -482 2832 2738 2736 130 30 28 chr13 18474184 18474615 -83398554 + MSTB1 LTR MaLR 1 432 0 398 296 162 42 chr13 18474615 18474814 -83398355 - L2 LINE L2 -576 2738 2488 261 288 36 27 chr13 18474980 18475091 -83398078 + MER5B DNA MER1_type 43 154 -24 186 43 0 0 chr13 18476347 18476370 -83396799 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 83 0 0 chr13 18477010 18477312 -83395857 - AluY SINE Alu -8 303 2 793 195 39 0 chr13 18478771 18478899 -83394270 + FLAM_A SINE Alu 1 133 0 25 0 0 0 chr13 18480021 18480046 -83393123 + AT_rich Low_complexity Low_complexity 1 25 0 303 155 48 36 chr13 18480321 18480405 -83392764 - HAL1b LINE L1 0 1348 1264 22 0 0 0 chr13 18481133 18481155 -83392014 + AT_rich Low_complexity Low_complexity 1 22 0 729 267 146 39 chr13 18481362 18481897 -83391272 - L1MC4a LINE L1 -1926 5882 5291 25 0 0 0 chr13 18482248 18482273 -83390896 + AT_rich Low_complexity Low_complexity 1 25 0 1193 118 0 6 chr13 18482484 18482653 -83390516 + L1MB8 LINE L1 6011 6178 0 247 167 0 0 chr13 18484414 18484456 -83388713 - MIR SINE MIR -3 259 218 199 184 26 0 chr13 18484423 18484461 -83388708 - L2 LINE L2 -18 3254 3216 * 1175 142 12 0 chr13 18484463 18484632 -83388537 + Tigger4(Zombi) DNA MER2_type 3 173 -2558 3568 112 29 11 chr13 18484634 18485129 -83388040 + Tigger4(Zombi) DNA MER2_type 2170 2677 -54 182 62 31 0 chr13 18485129 18485161 -83388008 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3568 112 29 11 chr13 18485161 18485217 -83387952 + Tigger4(Zombi) DNA MER2_type 2677 2731 0 336 269 59 34 chr13 18485275 18485394 -83387775 - MIR SINE MIR -117 145 24 1479 179 32 65 chr13 18485949 18486257 -83386912 - AluJo SINE Alu -14 298 1 2217 119 3 0 chr13 18487257 18487560 -83385609 + AluSq SINE Alu 1 304 -9 203 277 78 92 chr13 18488133 18488404 -83384765 - L2 LINE L2 -494 2820 2554 2080 132 3 0 chr13 18489737 18490033 -83383136 - AluJb SINE Alu -7 305 9 279 0 0 0 chr13 18490339 18490370 -83382799 + (TG)n Simple_repeat Simple_repeat 1 31 0 213 39 0 0 chr13 18490369 18490395 -83382774 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2201 116 0 13 chr13 18491243 18491545 -83381624 - AluSx SINE Alu -14 298 1 1101 132 68 29 chr13 18491619 18491824 -83381345 - MER20 DNA MER1_type 0 219 7 2248 118 0 16 chr13 18492205 18492518 -83380651 + AluSx SINE Alu 1 308 -4 329 382 0 0 chr13 18493148 18493279 -83379890 - MIR SINE MIR -117 145 15 344 250 144 30 chr13 18493294 18493426 -83379743 - MER117 DNA MER1_type -9 188 42 52 0 0 0 chr13 18493947 18493999 -83379170 + AT_rich Low_complexity Low_complexity 1 52 0 1867 111 89 0 chr13 18495222 18495492 -83377677 - AluSx SINE Alu -18 294 1 570 239 81 47 chr13 18495869 18496103 -83377066 + L2 LINE L2 3051 3292 -21 360 310 94 61 chr13 18496257 18496651 -83376518 + MLT1K LTR MaLR 128 534 -54 1094 129 0 12 chr13 18496664 18496827 -83376342 + AluSx SINE Alu 1 161 -151 22 0 0 0 chr13 18497314 18497336 -83375833 + AT_rich Low_complexity Low_complexity 1 22 0 2247 176 23 45 chr13 18497838 18498151 -83375018 + MER65C LTR ERV1 1 302 -159 1671 208 0 0 chr13 18498151 18498463 -83374706 - AluJb SINE Alu 0 312 1 2247 176 23 45 chr13 18498463 18498620 -83374549 + MER65C LTR ERV1 302 461 0 27 62 0 0 chr13 18498910 18498958 -83374211 + AT_rich Low_complexity Low_complexity 1 48 0 407 171 0 0 chr13 18499490 18499560 -83373609 + MER65C LTR ERV1 249 318 -143 226 204 0 0 chr13 18499559 18499603 -83373566 - AluSq SINE Alu -3 299 256 * 2091 125 0 0 chr13 18499656 18499936 -83373233 - AluSq SINE Alu -33 280 1 523 268 146 5 chr13 18500370 18500583 -83372586 + MIR SINE MIR 18 260 -2 414 57 0 0 chr13 18500588 18500641 -83372528 + (TG)n Simple_repeat Simple_repeat 2 54 0 2186 94 7 36 chr13 18502002 18502311 -83370858 + AluY SINE Alu 1 300 -11 299 284 159 5 chr13 18502888 18503096 -83370073 + MIR SINE MIR 10 249 -13 2475 186 243 70 chr13 18503212 18504082 -83369087 + LTR28 LTR ERV1 1 1020 0 2028 135 0 7 chr13 18505036 18505333 -83367836 + AluJb SINE Alu 1 295 -17 489 34 0 0 chr13 18505333 18505392 -83367777 + (TA)n Simple_repeat Simple_repeat 1 59 0 1891 170 3 0 chr13 18505435 18505735 -83367434 + AluJb SINE Alu 1 301 -11 206 368 53 0 chr13 18505811 18505887 -83367282 + L2 LINE L2 3168 3247 -25 1754 154 16 20 chr13 18506419 18506725 -83366444 + AluJo SINE Alu 1 305 -7 280 322 0 11 chr13 18507556 18507646 -83365523 + CT-rich Low_complexity Low_complexity 2 90 0 210 191 24 0 chr13 18507687 18507729 -83365440 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1295 206 45 76 chr13 18507865 18508327 -83364842 + MER39 LTR ERV1 260 707 0 268 169 169 56 chr13 18509597 18509668 -83363501 - L2 LINE L2 -2 3311 3233 1945 110 37 33 chr13 18509893 18510192 -83362977 - AluSx SINE Alu -12 300 1 888 141 0 16 chr13 18510679 18510807 -83362362 + FLAM_C SINE Alu 1 126 -7 429 257 7 59 chr13 18510838 18510974 -83362195 + MIR SINE MIR 104 232 -30 606 293 114 74 chr13 18511886 18512708 -83360461 + L2 LINE L2 2467 3312 -1 199 256 73 49 chr13 18513810 18513892 -83359277 - MIR SINE MIR -107 101 18 2208 118 7 7 chr13 18515368 18515673 -83357496 + AluSx SINE Alu 1 305 -7 1078 246 9 9 chr13 18515800 18516020 -83357149 + MER58A DNA MER1_type 1 220 -4 183 80 0 0 chr13 18516715 18516740 -83356429 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 2094 108 45 0 chr13 18517059 18517346 -83355823 - AluSx SINE Alu -12 300 1 556 279 50 6 chr13 18517708 18517887 -83355282 - MIR SINE MIR -56 206 20 543 291 10 66 chr13 18517948 18518144 -83355025 + MIR3 SINE MIR 20 204 -4 1332 267 86 80 chr13 18518578 18519278 -83353891 + MER21B LTR ERV1 6 709 -154 1072 261 54 45 chr13 18519278 18519723 -83353446 + L2 LINE L2 2857 3305 -8 2120 85 0 0 chr13 18519926 18520185 -83352984 - AluY SINE Alu -20 291 33 186 43 0 0 chr13 18520843 18520866 -83352303 + (T)n Simple_repeat Simple_repeat 1 23 0 1123 162 6 0 chr13 18521439 18521618 -83351551 + AluSg/x SINE Alu 133 312 0 2093 192 8 0 chr13 18521641 18522006 -83351163 + MER93b LTR ERV1 5 372 -1 241 186 0 51 chr13 18522192 18522251 -83350918 - Charlie3 DNA MER1_type -637 2073 2018 754 279 131 46 chr13 18522260 18522718 -83350451 + L3 LINE CR1 740 1236 -341 181 323 0 15 chr13 18522783 18522848 -83350321 - L2 LINE L2 -8 3264 3201 1827 209 92 35 chr13 18522964 18523418 -83349751 + MLT2B1 LTR ERVL 1 480 -40 2101 128 19 53 chr13 18523419 18523795 -83349374 - THE1B LTR MaLR 0 364 2 5097 78 1 6 chr13 18523796 18524446 -83348723 - THE1B-int LTR MaLR 0 1580 934 1704 156 11 7 chr13 18525149 18525424 -83347745 + AluJb SINE Alu 2 277 -35 227 31 31 0 chr13 18525427 18525459 -83347710 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2209 109 0 6 chr13 18525995 18526307 -83346862 + AluSp SINE Alu 3 312 -1 1858 153 3 31 chr13 18526982 18527302 -83345867 + AluJb SINE Alu 1 311 -1 292 309 52 15 chr13 18527365 18527501 -83345668 + MIR SINE MIR 12 152 -110 2201 105 11 0 chr13 18528744 18529030 -83344139 + AluSc SINE Alu 2 290 -19 1339 134 99 95 chr13 18529337 18529651 -83343518 + AluJb SINE Alu 1 315 0 2586 92 48 28 chr13 18529823 18530180 -83342989 - THE1B LTR MaLR 0 364 1 567 29 0 0 chr13 18531197 18531266 -83341903 + (TG)n Simple_repeat Simple_repeat 2 70 0 973 223 27 0 chr13 18531724 18531908 -83341261 + MER5A DNA MER1_type 1 189 0 285 29 0 0 chr13 18531960 18531994 -83341175 + (TG)n Simple_repeat Simple_repeat 2 35 0 264 259 121 52 chr13 18532235 18532351 -83340818 - MIR3 SINE MIR -27 181 58 183 328 0 0 chr13 18533017 18533081 -83340088 + L2 LINE L2 3250 3313 0 2250 100 10 0 chr13 18533820 18534119 -83339050 - AluSc SINE Alu -7 302 1 204 212 45 91 chr13 18534575 18534641 -83338528 + L2 LINE L2 3170 3232 -40 21 36 0 0 chr13 18535205 18535233 -83337936 + AT_rich Low_complexity Low_complexity 1 28 0 3050 106 50 10 chr13 18535233 18535734 -83337435 - LTR9B LTR ERV1 -82 562 42 1232 136 0 0 chr13 18535742 18535941 -83337228 - HUERS-P3 LTR ERV1 -3 8916 8718 1249 141 5 0 chr13 18535983 18536182 -83336987 - LTR9B LTR ERV1 0 644 445 437 309 137 44 chr13 18536582 18536990 -83336179 - L2 LINE L2 -401 2913 2468 325 337 31 0 chr13 18537047 18537145 -83336024 - L2 LINE L2 -3 3269 3169 306 348 79 0 chr13 18537837 18538015 -83335154 - L2 LINE L2 -534 2780 2589 337 305 16 75 chr13 18538029 18538111 -83335058 + MIR SINE MIR 87 172 -90 481 250 44 61 chr13 18538111 18538291 -83334878 + MER69A DNA AcHobo 1 177 0 337 305 16 75 chr13 18538291 18538395 -83334774 + MIR SINE MIR 172 262 0 326 340 106 30 chr13 18538401 18538769 -83334400 - L2 LINE L2 -817 2497 2102 605 206 82 38 chr13 18538769 18539044 -83334125 + L1MD3 LINE L1 6080 7984 -11 185 81 0 27 chr13 18539044 18539081 -83334088 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 399 119 0 0 chr13 18539422 18539489 -83333680 + (GA)n Simple_repeat Simple_repeat 2 68 0 403 167 117 0 chr13 18539716 18539811 -83333358 + MER5A DNA MER1_type 4 112 -77 2266 100 0 7 chr13 18540473 18540772 -83332397 - AluSx SINE Alu -15 297 1 1894 132 4 0 chr13 18541169 18541449 -83331720 + AluSq SINE Alu 33 313 0 322 278 21 21 chr13 18542208 18542305 -83330864 + MIR SINE MIR 163 259 -3 2060 92 0 0 chr13 18542566 18542827 -83330342 - AluY SINE Alu -50 261 1 26 0 0 0 chr13 18542898 18542924 -83330245 + AT_rich Low_complexity Low_complexity 1 26 0 632 259 121 45 chr13 18542937 18543161 -83330008 - MIR SINE MIR -21 241 1 378 309 79 26 chr13 18543175 18543327 -83329842 - MIR SINE MIR -51 211 52 219 330 25 85 chr13 18543473 18543591 -83329578 + MIR SINE MIR 1 111 -151 207 338 26 0 chr13 18543724 18543801 -83329368 + MIR SINE MIR 56 134 -128 2733 111 24 32 chr13 18546017 18546438 -83326731 - MER4E LTR ERV1 0 766 343 2845 104 60 39 chr13 18546438 18546920 -83326249 - LTR22B LTR ERVK 0 492 1 2733 111 24 32 chr13 18546920 18546964 -83326205 - MER4E LTR ERV1 -423 343 300 482 95 12 60 chr13 18546964 18547048 -83326121 + MADE1 DNA Mariner 1 80 0 2733 111 24 32 chr13 18547048 18547189 -83325980 - MER4E LTR ERV1 -466 300 1 972 194 6 0 chr13 18547515 18547685 -83325484 + FRAM SINE Alu 1 170 -6 346 250 13 0 chr13 18547731 18547807 -83325362 + L2 LINE L2 3196 3272 0 1785 224 35 25 chr13 18548052 18548563 -83324606 - MER77 LTR ERV1 -8 597 1 2777 190 44 10 chr13 18548841 18549435 -83323734 + MER90 LTR ERV1 1 614 0 234 91 0 0 chr13 18549676 18549709 -83323460 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 1658 175 0 45 chr13 18549869 18550177 -83322992 - AluJb SINE Alu -18 294 1 468 273 159 18 chr13 18551493 18551516 -83321653 - MIR SINE MIR -7 255 237 806 140 7 37 chr13 18551516 18551652 -83321517 - FLAM_C SINE Alu 0 133 2 468 273 159 18 chr13 18551652 18551848 -83321321 - MIR SINE MIR -25 237 5 471 256 279 0 chr13 18551871 18552090 -83321079 + Charlie2a DNA MER1_type 14 293 -2489 273 192 39 26 chr13 18552738 18552816 -83320353 + Charlie2a DNA MER1_type 608 686 -2176 1172 185 198 0 chr13 18552833 18553231 -83319938 - MER69 DNA AcHobo -5 2521 2043 760 283 135 7 chr13 18553237 18553541 -83319628 - MER69 DNA AcHobo -598 628 286 2045 182 36 49 chr13 18553541 18553560 -83319609 - L1M4 LINE L1 -1373 4773 4755 2189 104 7 0 chr13 18553560 18553859 -83319310 - AluSp SINE Alu -12 301 1 2045 182 36 49 chr13 18553859 18554395 -83318774 - L1M4 LINE L1 -1391 4755 4225 239 257 37 9 chr13 18554422 18554531 -83318638 + Charlie2 DNA MER1_type 2375 2486 -376 1655 155 11 7 chr13 18554559 18554837 -83318332 - AluJb SINE Alu -33 279 1 1057 176 66 25 chr13 18554882 18555200 -83317969 + Charlie2 DNA MER1_type 2532 2862 0 527 123 0 0 chr13 18555288 18555361 -83317808 + AluS SINE Alu 1 73 -239 1687 147 0 8 chr13 18555361 18555619 -83317550 + AluSx SINE Alu 42 297 -15 22 0 0 0 chr13 18556389 18556411 -83316758 + GC_rich Low_complexity Low_complexity 1 22 0 1027 116 0 43 chr13 18558776 18558940 -83314229 - FRAM SINE Alu -1 175 19 189 289 324 0 chr13 18558997 18559139 -83314030 + MIR SINE MIR 68 255 -7 1027 244 137 18 chr13 18559235 18559783 -83313386 - Charlie2 DNA MER1_type -18 2844 2232 842 262 33 50 chr13 18559831 18560133 -83313036 - Charlie2 DNA MER1_type -2564 298 2 898 164 175 26 chr13 18560140 18560329 -83312840 + MER20 DNA MER1_type 3 219 0 626 197 105 7 chr13 18560381 18560533 -83312636 - MER58C DNA MER1_type -3 212 46 289 315 158 7 chr13 18560533 18560679 -83312490 + MIR SINE MIR 86 253 -9 1205 181 33 13 chr13 18561279 18561583 -83311586 + MER33 DNA MER1_type 9 318 -6 904 275 128 18 chr13 18561657 18562155 -83311014 - HAL1 LINE L1 -98 2409 1857 1931 268 96 55 chr13 18562250 18562453 -83310716 - HAL1 LINE L1 -905 1602 1409 2049 86 0 4 chr13 18562453 18562720 -83310449 - AluY SINE Alu -5 306 41 1931 268 96 55 chr13 18562720 18562747 -83310422 - HAL1 LINE L1 -1098 1409 1385 1898 152 10 16 chr13 18562747 18563056 -83310113 - AluJo SINE Alu -5 307 1 1931 268 96 55 chr13 18563056 18563188 -83309981 - HAL1 LINE L1 -1122 1385 1260 1683 115 35 8 chr13 18563188 18563449 -83309720 - AluSx SINE Alu -5 307 40 1931 268 96 55 chr13 18563449 18563845 -83309324 - HAL1 LINE L1 -1247 1260 882 222 105 0 0 chr13 18563845 18563883 -83309286 + (TG)n Simple_repeat Simple_repeat 1 38 0 1931 268 96 55 chr13 18563883 18564574 -83308595 - HAL1 LINE L1 -1625 882 90 3655 170 40 28 chr13 18564660 18565134 -83308035 - MER44D DNA MER2_type -1882 605 245 2155 121 32 22 chr13 18565134 18565505 -83307664 - THE1C LTR MaLR 0 375 1 3655 170 40 28 chr13 18565505 18565754 -83307415 - MER44D DNA MER2_type -2242 245 1 1133 234 101 15 chr13 18565754 18566443 -83306726 - L1ME3 LINE L1 -80 6082 5323 332 299 25 70 chr13 18566811 18566968 -83306201 - L2 LINE L2 0 3313 3164 21 57 0 0 chr13 18567995 18568030 -83305139 + AT_rich Low_complexity Low_complexity 1 35 0 1080 165 52 19 chr13 18568233 18568445 -83304724 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr13 18569395 18569423 -83303746 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr13 18569810 18569835 -83303334 + (A)n Simple_repeat Simple_repeat 1 25 0 2000 136 0 37 chr13 18570308 18570631 -83302538 - AluSx SINE Alu -1 311 1 691 222 49 6 chr13 18570671 18570833 -83302336 + MIR SINE MIR 31 199 -63 770 289 72 0 chr13 18571603 18571838 -83301331 + MIR SINE MIR 11 262 0 23 54 0 0 chr13 18572021 18572058 -83301111 + AT_rich Low_complexity Low_complexity 1 37 0 231 36 0 0 chr13 18572386 18572414 -83300755 + (TG)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr13 18572998 18573027 -83300142 + AT_rich Low_complexity Low_complexity 1 29 0 1018 169 0 28 chr13 18573727 18573905 -83299264 - AluJb SINE Alu -17 295 123 275 372 24 64 chr13 18574180 18574476 -83298693 - L2 LINE L2 -53 3219 2936 187 238 0 0 chr13 18574542 18574584 -83298585 + L2 LINE L2 3272 3313 0 2126 98 0 21 chr13 18574848 18575135 -83298034 - AluSx SINE Alu -31 281 1 283 244 24 0 chr13 18575225 18575307 -83297862 - L1MC4a LINE L1 -1884 5924 5841 2264 136 17 8 chr13 18576608 18576969 -83296200 + MLT1A1 LTR MaLR 2 365 0 3258 59 2 7 chr13 18577710 18578154 -83295015 + LTR7 LTR ERV1 1 442 -8 1731 246 79 13 chr13 18578177 18578710 -83294459 - MLT1G LTR MaLR 0 590 23 1829 147 0 4 chr13 18580367 18580647 -83292522 - AluSx SINE Alu 0 312 30 3550 51 0 7 chr13 18580649 18581100 -83292069 - LTR7 LTR ERV1 -2 448 1 2443 71 45 13 chr13 18581100 18581478 -83291691 - HERVH LTR ERV1 0 7713 7324 1267 143 19 0 chr13 18581478 18581694 -83291475 - HERVH LTR ERV1 -1894 5819 5600 4086 138 6 1 chr13 18581695 18582354 -83290815 - HERVH LTR ERV1 -2564 5149 4488 3273 107 0 6 chr13 18582356 18582861 -83290308 - HERVH LTR ERV1 -3720 3993 3492 * 19010 87 57 34 chr13 18582851 18586023 -83287146 - HERVH LTR ERV1 -4423 3290 46 239 195 49 73 chr13 18586023 18586070 -83287099 - AluY SINE Alu -221 80 34 3466 54 9 5 chr13 18586070 18586516 -83286653 - LTR7 LTR ERV1 -2 448 1 239 195 49 73 chr13 18586516 18586550 -83286619 - AluY SINE Alu -267 34 1 472 185 198 51 chr13 18588752 18588909 -83284260 + MER5A DNA MER1_type 10 189 0 3376 144 29 10 chr13 18588978 18589568 -83283601 - MER7C DNA MER2_type -1 601 1 704 103 0 47 chr13 18590115 18590222 -83282947 + FLAM_A SINE Alu 17 118 -24 2172 112 10 0 chr13 18590731 18591034 -83282135 - AluSq SINE Alu -6 307 2 2559 161 57 39 chr13 18591527 18592366 -83280803 + MER73 LTR ERVL 1 640 -4 556 275 145 19 chr13 18592621 18592828 -83280341 - MIR SINE MIR -9 253 21 3334 117 86 16 chr13 18592939 18593520 -83279649 - L1PA16 LINE L1 0 6166 5545 2333 94 0 0 chr13 18593581 18593878 -83279291 - AluY SINE Alu -14 297 1 337 263 30 30 chr13 18595975 18596074 -83277095 - MIR SINE MIR -70 138 40 919 290 107 30 chr13 18597304 18597735 -83275434 - L2 LINE L2 -1 3312 2849 21 36 0 0 chr13 18599090 18599118 -83274051 + AT_rich Low_complexity Low_complexity 1 28 0 2048 122 80 11 chr13 18599858 18600234 -83272935 + L1MA3 LINE L1 5904 6305 0 976 224 14 0 chr13 18600286 18600500 -83272669 + MER58A DNA MER1_type 1 217 -7 330 272 130 6 chr13 18600907 18601076 -83272093 - L1ME LINE L1 -358 5812 5623 307 320 128 57 chr13 18601307 18601673 -83271496 - L1ME LINE L1 -1116 5030 4639 637 152 0 9 chr13 18601750 18601855 -83271314 + FLAM_C SINE Alu 5 108 -35 1690 222 158 21 chr13 18601864 18602225 -83270944 - L1MEc LINE L1 -5594 802 492 3670 81 140 27 chr13 18602225 18602818 -83270351 + PABL_A LTR ERV1 1 660 0 1690 222 158 21 chr13 18602818 18603131 -83270038 - L1MEc LINE L1 -5904 492 35 2022 112 7 20 chr13 18603231 18603525 -83269644 + AluSg SINE Alu 1 290 -20 872 219 35 101 chr13 18603656 18603994 -83269175 - MLT2D LTR ERVL -8 406 91 1720 90 59 67 chr13 18604071 18604427 -83268742 + MER4E LTR ERV1 425 777 -2 529 291 19 34 chr13 18605882 18606088 -83267081 + MIR SINE MIR 12 214 -48 338 225 34 22 chr13 18606137 18606226 -83266943 + L2 LINE L2 3221 3310 -3 2410 74 0 10 chr13 18606448 18606757 -83266412 + AluSg SINE Alu 1 306 -4 22 70 0 0 chr13 18606937 18606980 -83266189 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr13 18607324 18607353 -83265816 + AT_rich Low_complexity Low_complexity 1 29 0 189 386 14 73 chr13 18607577 18607797 -83265372 - L2 LINE L2 -94 3178 2972 1712 192 68 34 chr13 18607824 18608266 -83264903 + LTR2B LTR ERV1 34 490 0 388 279 82 14 chr13 18608724 18608871 -83264298 - MIR SINE MIR -65 197 41 746 272 181 48 chr13 18608939 18609457 -83263712 - MLT1G1 LTR MaLR -8 587 1 1814 260 53 13 chr13 18609690 18610217 -83262952 + L2 LINE L2 1284 1831 -1483 231 269 45 0 chr13 18610480 18610547 -83262622 - MIR SINE MIR -73 189 120 2121 117 7 19 chr13 18610547 18610854 -83262315 + AluSq SINE Alu 1 303 -10 185 333 0 0 chr13 18610858 18610906 -83262263 + L2 LINE L2 2222 2269 -1045 21 57 0 0 chr13 18610953 18610988 -83262181 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 18611003 18611024 -83262145 + AT_rich Low_complexity Low_complexity 1 21 0 386 341 29 29 chr13 18611031 18611236 -83261933 + L1M4 LINE L1 3985 4189 -1957 23 0 0 0 chr13 18611298 18611321 -83261848 + AT_rich Low_complexity Low_complexity 1 23 0 1329 105 9 22 chr13 18611623 18611852 -83261317 - MER4D LTR ERV1 -638 234 9 1348 194 42 9 chr13 18611864 18612215 -83260954 - MER4D-int LTR ERV1 0 7097 6385 560 140 103 10 chr13 18612221 18612360 -83260809 - MER4D-int LTR ERV1 -624 6134 3950 690 186 6 98 chr13 18612610 18612793 -83260376 - MER4D-int LTR ERV1 -4168 3952 3787 392 211 66 40 chr13 18612925 18613061 -83260108 - LTR38B-int LTR ERV1 -1865 4733 4594 4996 149 72 84 chr13 18613061 18614527 -83258642 - LTR38B-int LTR ERV1 0 1919 1479 2339 79 0 25 chr13 18614527 18614843 -83258326 + AluY SINE Alu 1 308 -3 4996 149 72 84 chr13 18614843 18616207 -83256962 - LTR38B-int LTR ERV1 -440 1479 100 205 156 0 0 chr13 18616208 18616240 -83256929 + GA-rich Low_complexity Low_complexity 1 32 0 820 299 12 16 chr13 18616489 18616740 -83256429 - LTR38B-int LTR ERV1 -1422 364 115 1140 149 70 13 chr13 18616821 18617049 -83256120 - LTR38B LTR ERV1 -25 585 345 375 145 53 0 chr13 18617076 18617160 -83256009 + LTR38B LTR ERV1 522 610 -1 543 53 0 0 chr13 18617181 18617256 -83255913 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2217 111 0 29 chr13 18617258 18617574 -83255595 - AluSx SINE Alu -5 307 1 21 0 0 0 chr13 18617621 18617642 -83255527 + AT_rich Low_complexity Low_complexity 1 21 0 513 286 105 46 chr13 18618332 18618570 -83254599 + MIR SINE MIR 8 259 -3 293 230 15 30 chr13 18618647 18618782 -83254387 + (TA)n Simple_repeat Simple_repeat 2 134 0 314 89 13 127 chr13 18620920 18620965 -83252204 - L1MB4 LINE L1 -2 6178 6144 1866 166 3 0 chr13 18620965 18621260 -83251909 - AluJb SINE Alu -16 296 1 314 89 13 127 chr13 18621260 18621293 -83251876 - L1MB4 LINE L1 -36 6144 6109 23 0 0 0 chr13 18621458 18621481 -83251688 + AT_rich Low_complexity Low_complexity 1 23 0 372 268 6 55 chr13 18621561 18621744 -83251425 - MLT1J LTR MaLR -78 433 260 266 298 6 57 chr13 18621827 18621985 -83251184 - MLT1J1 LTR MaLR -296 150 1 746 260 41 32 chr13 18622957 18623176 -83249993 - MER58A DNA MER1_type -3 221 1 307 267 200 13 chr13 18623184 18623334 -83249835 - MER5B DNA MER1_type 0 178 1 486 357 130 34 chr13 18623451 18624305 -83248864 - L2 LINE L2 -424 2890 1955 525 276 156 16 chr13 18624462 18624654 -83248515 + MIR SINE MIR 23 241 -21 2114 82 60 0 chr13 18624879 18625161 -83248008 - AluSx SINE Alu -13 299 1 3658 56 2 2 chr13 18625353 18625816 -83247353 - L1PA10 LINE L1 -2 6166 5704 217 224 122 0 chr13 18625886 18625935 -83247234 - MER5B DNA MER1_type -74 104 50 2495 44 10 0 chr13 18627674 18627972 -83245197 + AluY SINE Alu 1 301 -10 22 0 0 0 chr13 18629205 18629227 -83243942 + AT_rich Low_complexity Low_complexity 1 22 0 355 337 92 30 chr13 18629885 18630220 -83242949 + HAL1 LINE L1 306 661 -1846 21 0 0 0 chr13 18630293 18630314 -83242855 + AT_rich Low_complexity Low_complexity 1 21 0 409 338 25 50 chr13 18630324 18630525 -83242644 + LTR16B LTR ERVL 1 196 -268 10734 197 16 20 chr13 18630574 18630725 -83242444 - L1PB3 LINE L1 -1 6153 6003 2244 112 0 13 chr13 18630725 18631038 -83242131 - AluSg SINE Alu -1 309 1 10734 197 16 20 chr13 18631038 18633720 -83239449 - L1PB3 LINE L1 -151 6003 3357 2143 134 3 0 chr13 18633720 18634018 -83239151 - AluSx SINE Alu -13 299 1 10734 197 16 20 chr13 18634018 18635566 -83237603 - L1PB3 LINE L1 -2797 3357 1803 746 131 0 0 chr13 18635566 18635673 -83237496 - U6 snRNA snRNA 0 107 1 484 241 42 47 chr13 18635690 18635902 -83237267 + LTR16B LTR ERVL 242 452 -12 865 320 48 17 chr13 18636123 18636601 -83236568 + HERV16 LTR ERVL 283 775 -4221 1161 306 23 24 chr13 18636634 18637488 -83235681 + HERV16 LTR ERVL 1664 2577 -2419 871 277 5 8 chr13 18637493 18637762 -83235407 + L1MCa LINE L1 3 250 -5795 835 212 94 0 chr13 18637754 18637966 -83235203 + L1MCa LINE L1 2920 3151 -3413 * 465 268 57 0 chr13 18637968 18638091 -83235078 + L2 LINE L2 3184 3313 0 22 35 0 0 chr13 18639291 18639320 -83233849 + AT_rich Low_complexity Low_complexity 1 29 0 189 355 0 37 chr13 18639694 18639801 -83233368 + L2 LINE L2 715 817 -2497 874 338 38 11 chr13 18641399 18641849 -83231320 - HERVL LTR ERVL -1300 4354 3893 611 303 51 0 chr13 18642619 18642794 -83230375 + MIR SINE MIR 31 214 -48 1044 189 320 53 chr13 18642990 18643478 -83229691 + MER51A LTR ERV1 1 618 -16 3908 117 44 2 chr13 18643933 18644542 -83228627 - MER41B LTR ERV1 0 635 1 225 262 202 0 chr13 18644902 18644986 -83228183 - MIR3 SINE MIR -21 187 87 360 282 68 8 chr13 18644999 18645116 -83228053 - L2 LINE L2 -12 3260 3137 2242 113 0 0 chr13 18645116 18645418 -83227751 - AluSc SINE Alu -7 302 1 1825 133 82 20 chr13 18646238 18646591 -83226578 + THE1C LTR MaLR 1 375 0 2096 108 17 3 chr13 18647164 18647459 -83225710 - AluSx SINE Alu -11 301 3 218 259 17 0 chr13 18648184 18648242 -83224927 + MIR SINE MIR 204 262 0 2251 106 0 3 chr13 18648266 18648567 -83224602 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr13 18648670 18648698 -83224471 + AT_rich Low_complexity Low_complexity 1 28 0 1819 113 109 0 chr13 18649208 18649483 -83223686 + AluSq SINE Alu 1 305 -8 222 323 88 80 chr13 18649983 18650246 -83222923 - L2 LINE L2 -976 2338 2074 189 333 141 0 chr13 18650605 18650704 -83222465 + L2 LINE L2 2923 3035 -237 485 237 138 69 chr13 18650719 18650951 -83222218 + MIR SINE MIR 15 262 0 640 298 57 66 chr13 18651922 18652271 -83220898 - L3 LINE CR1 -163 1414 1069 196 324 131 42 chr13 18652366 18652625 -83220544 + L2 LINE L2 2694 2975 -339 283 295 39 0 chr13 18652782 18652860 -83220309 + L2 LINE L2 3192 3272 0 33 25 0 0 chr13 18654431 18654471 -83218698 + AT_rich Low_complexity Low_complexity 1 40 0 8315 120 28 10 chr13 18654517 18655891 -83217278 - Tigger1 DNA MER2_type 0 2418 1021 5678 131 24 52 chr13 18656026 18657078 -83216091 - Tigger1 DNA MER2_type -1396 1022 1 1742 167 13 10 chr13 18657221 18657521 -83215648 + AluJo SINE Alu 1 301 -11 403 271 10 0 chr13 18657955 18658051 -83215118 - MER68 LTR ERV1 0 562 466 381 162 0 0 chr13 18658051 18658119 -83215050 + CT-rich Low_complexity Low_complexity 4 71 0 2175 200 10 49 chr13 18658144 18658630 -83214539 - MER68 LTR ERV1 -95 467 1 462 194 30 139 chr13 18658868 18658919 -83214250 - LTR16A LTR ERVL -8 442 387 2235 120 3 0 chr13 18658919 18659228 -83213941 - AluSp SINE Alu -3 310 1 462 194 30 139 chr13 18659228 18659243 -83213926 - LTR16A LTR ERVL -63 387 372 2059 140 0 7 chr13 18659243 18659535 -83213634 - AluSx SINE Alu -22 290 1 462 194 30 139 chr13 18659535 18659632 -83213537 - LTR16A LTR ERVL -78 372 296 1923 251 81 30 chr13 18660351 18660567 -83212602 + L1ME3A LINE L1 5340 5544 -626 1921 152 139 16 chr13 18660567 18660948 -83212221 - MSTA LTR MaLR 0 428 1 1923 251 81 30 chr13 18660948 18661488 -83211681 + L1ME3A LINE L1 5544 6134 -36 34 55 0 0 chr13 18662443 18662498 -83210671 + AT_rich Low_complexity Low_complexity 1 55 0 1651 163 27 18 chr13 18662618 18662949 -83210220 - MER44D DNA MER2_type 0 609 6 241 390 78 7 chr13 18662967 18663121 -83210048 + MIR SINE MIR 24 188 -74 311 186 124 183 chr13 18663352 18663483 -83209686 + MER112 DNA MER1_type 2 110 -150 1653 184 6 34 chr13 18663483 18663804 -83209365 - AluJo SINE Alu 0 312 1 311 186 124 183 chr13 18663804 18663946 -83209223 + MER112 DNA MER1_type 110 259 -1 21 0 0 0 chr13 18664275 18664296 -83208873 + AT_rich Low_complexity Low_complexity 1 21 0 693 217 0 0 chr13 18664343 18664472 -83208697 + FRAM SINE Alu 22 150 -26 1026 204 0 0 chr13 18664492 18664698 -83208471 - L1MB7 LINE L1 -57 6127 5922 1904 138 52 0 chr13 18664702 18665028 -83208141 - MER7A DNA MER2_type 0 346 6 4870 205 36 21 chr13 18665037 18665591 -83207578 - L1MB7 LINE L1 -251 5923 5379 1100 174 158 26 chr13 18665591 18665664 -83207505 - MER2 DNA MER2_type 0 344 282 218 32 32 0 chr13 18665664 18665695 -83207474 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1100 174 158 26 chr13 18665695 18665925 -83207244 - MER2 DNA MER2_type -62 282 1 4870 205 36 21 chr13 18665925 18667270 -83205899 - L1MB7 LINE L1 -795 5379 3995 412 234 44 0 chr13 18667275 18667412 -83205757 + L1M4 LINE L1 2988 3130 -3016 * 478 238 0 21 chr13 18667408 18667551 -83205618 - L1MB7 LINE L1 -2487 3659 3520 2234 245 49 17 chr13 18667551 18668436 -83204733 - L1M4c LINE L1 -4320 2505 1459 1851 164 137 33 chr13 18668453 18668971 -83204198 - LTR49 LTR ERV1 -23 572 1 3809 195 32 21 chr13 18668971 18669841 -83203328 - L1M4c LINE L1 -5075 1467 588 900 161 76 85 chr13 18669856 18670080 -83203089 - AluSg/x SINE Alu -15 297 76 889 139 0 29 chr13 18670106 18670243 -83202926 - AluSq/x SINE Alu -179 133 1 1642 213 21 77 chr13 18670244 18670803 -83202366 - L1M4c LINE L1 -5977 565 38 679 217 0 0 chr13 18670841 18670998 -83202171 + L1M4 LINE L1 1025 1181 -5361 366 292 62 8 chr13 18672050 18672180 -83200989 + MIR3 SINE MIR 49 185 -23 38 0 0 38 chr13 18672882 18672910 -83200259 + AT_rich Low_complexity Low_complexity 1 28 -23 2133 125 3 20 chr13 18672910 18673214 -83199955 + AluSx SINE Alu 1 299 -13 38 0 0 38 chr13 18673214 18673238 -83199931 + AT_rich Low_complexity Low_complexity 28 51 0 310 259 58 86 chr13 18673437 18673576 -83199593 + MIR3 SINE MIR 5 139 -69 1713 136 66 17 chr13 18673909 18674196 -83198973 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr13 18674331 18674352 -83198817 + AT_rich Low_complexity Low_complexity 1 21 0 3530 181 26 4 chr13 18674404 18675104 -83198065 + L1MB8 LINE L1 5464 6178 0 22 0 0 0 chr13 18675235 18675257 -83197912 + AT_rich Low_complexity Low_complexity 1 22 0 350 236 11 22 chr13 18675510 18675599 -83197570 - MER5B DNA MER1_type -4 174 87 5434 162 15 18 chr13 18675794 18676168 -83197001 - L1PA16 LINE L1 -5 6161 5787 1995 147 8 54 chr13 18676168 18676521 -83196648 + MER1B DNA MER1_type 1 337 0 5434 162 15 18 chr13 18676521 18677250 -83195919 - L1PA16 LINE L1 -379 5787 5057 1938 169 3 3 chr13 18677250 18677546 -83195623 + AluJb SINE Alu 1 296 -16 5434 162 15 18 chr13 18677546 18678508 -83194661 - L1PA16 LINE L1 -1109 5057 4106 23 0 0 0 chr13 18679010 18679033 -83194136 + AT_rich Low_complexity Low_complexity 1 23 0 430 372 7 0 chr13 18679376 18679521 -83193648 + L3 LINE CR1 1428 1573 -4 254 236 171 0 chr13 18679683 18679806 -83193363 - L1MEc LINE L1 -4873 1240 1097 827 302 165 19 chr13 18679832 18680697 -83192472 - L1MEc LINE L1 -5367 1029 38 21 36 0 0 chr13 18680722 18680750 -83192419 + AT_rich Low_complexity Low_complexity 1 28 0 256 235 29 29 chr13 18680936 18681004 -83192165 + MLT1J2 LTR MaLR 1 68 -382 867 285 11 73 chr13 18681188 18681557 -83191612 + MLT1J2 LTR MaLR 87 432 -18 2549 89 3 21 chr13 18682729 18683109 -83190060 - THE1C LTR MaLR -2 373 1 22 35 0 0 chr13 18683601 18683630 -83189539 + AT_rich Low_complexity Low_complexity 1 29 0 1306 156 141 34 chr13 18683641 18683910 -83189259 - AluJo SINE Alu -4 298 1 2136 160 20 0 chr13 18684605 18684962 -83188207 - MLT1A1 LTR MaLR -1 364 1 1067 168 41 0 chr13 18685868 18686065 -83187104 - MER20 DNA MER1_type -1 218 14 207 0 0 0 chr13 18686115 18686138 -83187031 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1282 184 61 11 chr13 18686142 18686403 -83186766 - AluJb SINE Alu -30 282 9 234 0 0 0 chr13 18686414 18686440 -83186729 + (T)n Simple_repeat Simple_repeat 1 26 0 2230 87 3 10 chr13 18687366 18687666 -83185503 - AluSx SINE Alu -14 298 1 316 283 91 118 chr13 18688051 18688525 -83184644 + L1M2 LINE L1 530 990 -5859 246 226 118 11 chr13 18689973 18690066 -83183103 + L1ME4a LINE L1 5973 6075 -46 618 234 8 0 chr13 18691270 18691394 -83181775 + L2 LINE L2 3188 3312 -1 517 214 10 0 chr13 18691484 18691587 -83181582 - MER94 DNA DNA -25 109 6 291 248 114 0 chr13 18692170 18692275 -83180894 + L1MC4 LINE L1 7556 7672 -370 2054 164 19 6 chr13 18693046 18693406 -83179763 + MLT1A1 LTR MaLR 1 365 0 387 296 166 49 chr13 18693512 18694090 -83179079 + HAL1 LINE L1 1088 1774 -733 2169 164 179 149 chr13 18694317 18694643 -83178526 + L1MD3 LINE L1 6941 7256 -739 516 219 16 0 chr13 18694643 18694766 -83178403 + MLT1F1 LTR MaLR 1 125 -442 2169 164 179 149 chr13 18694766 18695330 -83177839 + L1MD3 LINE L1 7256 7983 -12 25 31 0 0 chr13 18695869 18695901 -83177268 + AT_rich Low_complexity Low_complexity 1 32 0 288 287 77 58 chr13 18695973 18696454 -83176715 + L1ME LINE L1 2518 3007 -3139 833 197 72 10 chr13 18696467 18696660 -83176509 + MER3 DNA MER1_type 5 209 0 31 44 0 0 chr13 18696749 18696794 -83176375 + AT_rich Low_complexity Low_complexity 1 45 0 733 318 77 39 chr13 18697027 18698361 -83174808 + L1ME LINE L1 3641 5043 -1103 2394 91 10 0 chr13 18698506 18698815 -83174354 + AluSx SINE Alu 1 312 0 334 262 87 52 chr13 18698854 18699026 -83174143 + L1ME LINE L1 5254 5431 -743 247 313 0 0 chr13 18699072 18699152 -83174017 + L1ME LINE L1 5485 5564 -557 1655 168 25 14 chr13 18700999 18701279 -83171890 + AluJo SINE Alu 13 295 -17 2392 101 0 0 chr13 18701680 18701988 -83171181 - AluSg SINE Alu -2 308 1 358 268 132 34 chr13 18702532 18702731 -83170438 - MIR SINE MIR -35 227 19 195 69 0 0 chr13 18703425 18703454 -83169715 + (TG)n Simple_repeat Simple_repeat 2 30 0 1924 164 3 3 chr13 18706328 18706626 -83166543 + AluJb SINE Alu 1 298 -14 303 71 0 0 chr13 18706627 18706669 -83166500 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 530 302 48 85 chr13 18707077 18707767 -83165402 + L2 LINE L2 2592 3255 -17 28 48 0 0 chr13 18707774 18707816 -83165353 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 18707891 18707912 -83165257 + AT_rich Low_complexity Low_complexity 1 21 0 611 293 61 10 chr13 18708142 18708436 -83164733 - L1MC5 LINE L1 -44 7917 7609 23 0 0 0 chr13 18708514 18708537 -83164632 + AT_rich Low_complexity Low_complexity 1 23 0 1685 135 24 3 chr13 18709833 18710129 -83163040 + L1MA9 LINE L1 6011 6312 0 183 244 67 0 chr13 18710338 18710383 -83162786 - L3b LINE CR1 -255 1328 1281 487 305 48 29 chr13 18711015 18711225 -83161944 + L3 LINE CR1 1266 1479 -98 851 333 138 43 chr13 18712958 18714310 -83158859 - L2 LINE L2 -6 3266 1789 1809 231 83 4 chr13 18714416 18714909 -83158260 - MLT1H1 LTR MaLR 0 555 24 3698 215 140 48 chr13 18716361 18717259 -83155910 - L1MEc LINE L1 -2049 4166 3352 2258 100 0 0 chr13 18717259 18717567 -83155602 - AluSg SINE Alu 0 308 1 3698 215 140 48 chr13 18717567 18717599 -83155570 - L1MEc LINE L1 -2863 3352 3324 2947 67 0 5 chr13 18717599 18717985 -83155184 + L1PA8 LINE L1 5772 6155 -17 3698 215 140 48 chr13 18717985 18717999 -83155170 - L1MEc LINE L1 -2891 3324 3313 2466 51 10 0 chr13 18717999 18718293 -83154876 + AluY SINE Alu 4 300 -11 3698 215 140 48 chr13 18718293 18719464 -83153705 - L1MEc LINE L1 -2902 3313 1897 2531 136 41 7 chr13 18719464 18719876 -83153293 - MSTB LTR MaLR 0 426 1 3698 215 140 48 chr13 18719876 18719915 -83153254 - L1MEc LINE L1 -4318 1897 1863 1245 273 83 27 chr13 18719926 18720442 -83152727 - MLT1H1 LTR MaLR -4 551 7 734 276 89 39 chr13 18720839 18721403 -83151766 + L1ME2 LINE L1 1926 2512 -4028 5191 257 60 40 chr13 18721418 18722202 -83150967 + L1ME2 LINE L1 2597 3364 -3194 543 106 59 0 chr13 18722202 18722287 -83150882 + L1PA10 LINE L1 6078 6167 -1 5191 257 60 40 chr13 18722287 18723041 -83150128 + L1ME2 LINE L1 3364 4101 -2457 1882 163 0 14 chr13 18723041 18723336 -83149833 + AluSx SINE Alu 1 291 -21 5191 257 60 40 chr13 18723336 18724526 -83148643 + L1ME2 LINE L1 4101 5266 -1292 719 221 34 25 chr13 18724526 18724730 -83148439 + MER3 DNA MER1_type 4 209 0 5191 257 60 40 chr13 18724730 18725827 -83147342 + L1ME2 LINE L1 5266 6524 -34 304 257 42 108 chr13 18725870 18725986 -83147183 + L1MC4 LINE L1 7835 7932 -110 1456 150 144 0 chr13 18725986 18726299 -83146870 + MER46B DNA MER2_type 4 236 0 304 257 42 108 chr13 18726299 18726396 -83146773 + L1MC4 LINE L1 7932 8034 -8 340 186 167 0 chr13 18726458 18726560 -83146609 - L1ME4a LINE L1 -38 6083 5965 256 318 0 0 chr13 18726808 18726893 -83146276 - L1ME LINE L1 -464 5657 5573 295 156 65 0 chr13 18727055 18727125 -83146044 - MIR SINE MIR -84 124 50 744 232 209 27 chr13 18729402 18729665 -83143504 + L2 LINE L2 2999 3309 -4 266 344 86 0 chr13 18730065 18730158 -83143011 - L2 LINE L2 -62 3210 3110 205 161 0 0 chr13 18730359 18730390 -83142779 + polypurine Low_complexity Low_complexity 5 35 0 234 322 51 42 chr13 18731274 18731392 -83141777 - MIR3 SINE MIR -75 133 15 430 312 57 92 chr13 18732684 18733033 -83140136 - L2 LINE L2 -5 3267 2931 270 299 22 60 chr13 18733148 18733282 -83139887 - MIR SINE MIR 0 262 134 23 54 0 0 chr13 18733518 18733555 -83139614 + AT_rich Low_complexity Low_complexity 1 37 0 388 336 62 55 chr13 18735415 18735689 -83137480 - L2 LINE L2 -814 2500 2225 331 272 0 33 chr13 18736201 18736293 -83136876 - MER5A DNA MER1_type -38 151 63 225 302 31 21 chr13 18736409 18736505 -83136664 - MER5A DNA MER1_type 0 189 93 * 356 361 41 24 chr13 18736412 18736581 -83136588 + MER5A DNA MER1_type 18 189 0 24 0 0 0 chr13 18737261 18737285 -83135884 + AT_rich Low_complexity Low_complexity 1 24 0 385 295 80 40 chr13 18739420 18739640 -83133529 + MIR SINE MIR 1 235 -27 458 274 101 62 chr13 18739814 18740171 -83132998 - L2 LINE L2 -2117 1197 827 310 281 157 13 chr13 18740698 18740851 -83132318 + L1MC/D LINE L1 5443 5617 -2191 180 0 0 0 chr13 18741121 18741141 -83132028 + (A)n Simple_repeat Simple_repeat 1 20 0 2190 94 0 7 chr13 18741257 18741564 -83131605 + AluY SINE Alu 1 305 0 315 290 30 0 chr13 18741611 18741780 -83131389 + L1M4 LINE L1 5224 5397 -749 310 265 232 6 chr13 18742151 18742332 -83130837 + L2 LINE L2 88 309 -3005 873 290 9 31 chr13 18742332 18742653 -83130516 + L2 LINE L2 1522 1835 -1479 564 240 49 44 chr13 18742682 18742886 -83130283 - L1ME3A LINE L1 -31 6139 5935 1053 112 13 0 chr13 18742903 18743146 -83130023 - AluSp/q SINE Alu 0 404 160 578 243 50 55 chr13 18743243 18743424 -83129745 - L2 LINE L2 -527 2787 2608 515 206 142 0 chr13 18744413 18744554 -83128615 + L2 LINE L2 1756 1916 -1398 533 270 56 33 chr13 18744671 18744911 -83128258 + MIR SINE MIR 5 262 0 270 81 0 0 chr13 18745372 18745409 -83127760 + (T)n Simple_repeat Simple_repeat 1 37 0 1620 264 92 25 chr13 18746173 18746793 -83126376 + L2 LINE L2 2341 3002 -311 1520 157 7 47 chr13 18748171 18748445 -83124724 - AluJb SINE Alu -11 301 39 280 315 26 32 chr13 18749184 18749307 -83123862 + MIR SINE MIR 46 167 -91 1618 186 17 10 chr13 18749307 18749603 -83123566 + AluJo SINE Alu 2 299 -13 280 315 26 32 chr13 18749603 18749639 -83123530 + MIR SINE MIR 167 202 -56 342 0 0 0 chr13 18749676 18749714 -83123455 + (TG)n Simple_repeat Simple_repeat 2 39 0 595 316 46 14 chr13 18749731 18749949 -83123220 + MIR SINE MIR 12 236 -26 2473 103 31 14 chr13 18750406 18750764 -83122405 - THE1B LTR MaLR 0 364 1 1115 231 172 9 chr13 18750944 18751281 -83121888 - MLT1H LTR MaLR -146 403 12 328 237 80 91 chr13 18751290 18751577 -83121592 - L1ME3A LINE L1 -2216 5592 5309 6134 131 7 6 chr13 18751681 18753154 -83120015 - L1PB1 LINE L1 -2 6149 4677 359 271 48 32 chr13 18753317 18753595 -83119574 - L1ME3A LINE L1 -1109 5037 4757 338 289 0 0 chr13 18754104 18754180 -83118989 - L2 LINE L2 0 3272 3197 256 234 0 0 chr13 18754206 18754253 -83118916 - MIR SINE MIR -102 160 114 326 291 76 51 chr13 18755749 18755907 -83117262 + MIR SINE MIR 67 228 -34 191 317 17 17 chr13 18756091 18756151 -83117018 + MIR SINE MIR 20 79 -183 448 346 16 5 chr13 18756482 18756667 -83116502 + LTR16C LTR ERVL 300 486 -5 238 385 55 0 chr13 18756680 18756771 -83116398 - L2 LINE L2 -49 3223 3128 799 326 7 15 chr13 18756897 18757308 -83115861 - L1ME3A LINE L1 -293 5860 5453 2233 289 103 26 chr13 18757347 18759512 -83113657 - L1ME3A LINE L1 -671 5474 3141 933 212 151 84 chr13 18759529 18759934 -83113235 - MLT1E1 LTR MaLR -2 652 221 235 344 11 0 chr13 18759922 18760015 -83113154 - MLT1E1 LTR MaLR -558 96 3 * 2301 95 3 7 chr13 18760067 18760373 -83112796 - AluY SINE Alu -6 305 1 381 272 52 42 chr13 18760412 18760603 -83112566 - L1ME3A LINE L1 -3204 2925 2733 380 272 22 37 chr13 18760596 18760732 -83112437 - L1ME3A LINE L1 -3616 2513 2380 * 227 304 36 24 chr13 18760791 18761044 -83112125 - L1ME3A LINE L1 -3997 2313 2058 264 336 7 7 chr13 18761164 18761310 -83111859 - L1ME3A LINE L1 -4688 1443 1298 2874 229 8 2 chr13 18761327 18761957 -83111212 + MER82 DNA MER2_type 11 644 -9 26 30 0 0 chr13 18762042 18762075 -83111094 + AT_rich Low_complexity Low_complexity 1 33 0 459 244 52 92 chr13 18762087 18762611 -83110558 - L1ME3A LINE L1 -4885 1234 732 237 340 19 19 chr13 18762832 18762938 -83110231 - L1ME3A LINE L1 -5578 541 436 337 294 141 54 chr13 18763506 18764152 -83109017 - L1MC4a LINE L1 -1844 5964 5263 2736 220 85 7 chr13 18764250 18765342 -83107827 - L1ME1 LINE L1 -4 6162 4980 21 0 0 0 chr13 18765560 18765581 -83107588 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 18765807 18765835 -83107334 + AT_rich Low_complexity Low_complexity 1 28 0 27 81 0 0 chr13 18765850 18765912 -83107257 + AT_rich Low_complexity Low_complexity 1 62 0 1875 177 0 3 chr13 18765961 18766260 -83106909 + AluJb SINE Alu 1 298 -14 560 276 136 42 chr13 18766512 18767026 -83106143 + L2 LINE L2 2708 3272 0 857 332 163 27 chr13 18767214 18767983 -83105186 + L3 LINE CR1 579 1451 -126 268 263 141 0 chr13 18768269 18768368 -83104801 + L3 LINE CR1 1463 1575 -2 650 278 47 16 chr13 18769116 18769307 -83103862 + MIR SINE MIR 54 250 -12 180 0 0 0 chr13 18771291 18771311 -83101858 + (GGA)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr13 18771358 18771381 -83101788 + (CCG)n Simple_repeat Simple_repeat 2 24 0 456 250 191 69 chr13 18771440 18771844 -83101325 + L1M2 LINE L1 566 1018 -5831 184 300 0 17 chr13 18774233 18774293 -83098876 - MIR SINE MIR -86 122 64 358 296 129 60 chr13 18774338 18774571 -83098598 + MIR SINE MIR 8 256 -6 555 317 11 28 chr13 18775137 18775317 -83097852 - MIR SINE MIR -21 241 65 254 213 16 16 chr13 18775405 18775466 -83097703 + CT-rich Low_complexity Low_complexity 3 63 0 299 331 71 32 chr13 18775771 18775925 -83097244 + MIR SINE MIR 20 179 -83 743 164 14 100 chr13 18776205 18776537 -83096632 + AluJo SINE Alu 28 310 -2 447 300 50 39 chr13 18777378 18777558 -83095611 - MIR3 SINE MIR -8 200 19 867 268 60 0 chr13 18778958 18779193 -83093976 - MIR SINE MIR 0 262 14 236 275 0 14 chr13 18779897 18779966 -83093203 + (TATG)n Simple_repeat Simple_repeat 2 69 0 24 53 0 0 chr13 18780689 18780727 -83092442 + AT_rich Low_complexity Low_complexity 1 38 0 767 154 0 0 chr13 18780814 18780931 -83092238 - FLAM_C SINE Alu -16 117 1 1359 118 32 112 chr13 18780987 18781300 -83091869 - Tigger7 DNA MER2_type 0 2587 2300 798 171 0 14 chr13 18781299 18781445 -83091724 - Tigger7 DNA MER2_type -265 74 27 * 1256 300 41 18 chr13 18781460 18782117 -83091052 - L1MC4a LINE L1 -1882 5926 5255 1927 106 14 0 chr13 18782143 18782425 -83090744 - MER7A DNA MER2_type 0 346 63 2313 224 107 6 chr13 18782745 18783425 -83089744 - L1MC4a LINE L1 -4 7804 7056 1730 171 79 6 chr13 18783689 18784029 -83089140 + MLT1A1 LTR MaLR 1 365 0 342 336 81 41 chr13 18784057 18784589 -83088580 + L2 LINE L2 2170 2722 -592 21 0 0 0 chr13 18784724 18784745 -83088424 + AT_rich Low_complexity Low_complexity 1 21 0 2215 127 0 9 chr13 18786505 18786820 -83086349 + AluSx SINE Alu 1 312 0 207 69 0 0 chr13 18787397 18787426 -83085743 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 948 181 0 50 chr13 18787553 18787735 -83085434 - AluJb SINE Alu -3 309 137 278 319 120 0 chr13 18789008 18789135 -83084034 - MIR SINE MIR -67 141 43 21 36 0 0 chr13 18790498 18790526 -83082643 + AT_rich Low_complexity Low_complexity 1 28 0 2509 52 0 13 chr13 18791621 18791927 -83081242 + AluY SINE Alu 1 302 -9 317 318 69 29 chr13 18792980 18793153 -83080016 + MIR SINE MIR 38 217 -45 647 216 199 6 chr13 18793176 18793357 -83079812 - MIR SINE MIR -40 222 7 669 35 0 0 chr13 18795334 18795419 -83077750 + AluY SINE Alu 224 308 -4 347 225 25 92 chr13 18797259 18797379 -83075790 + MIR SINE MIR 118 229 -33 633 294 51 47 chr13 18797559 18797794 -83075375 + MIR SINE MIR 20 255 -7 260 356 30 69 chr13 18798204 18798437 -83074732 + L2 LINE L2 2996 3219 -53 2218 115 0 13 chr13 18799324 18799636 -83073533 - AluSx SINE Alu -4 308 1 186 43 0 0 chr13 18799665 18799688 -83073481 + (CAA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr13 18800478 18800510 -83072659 + AT_rich Low_complexity Low_complexity 1 32 0 2124 117 3 22 chr13 18800712 18801028 -83072141 + AluSx SINE Alu 1 310 -2 284 220 33 0 chr13 18801038 18801129 -83072040 + MER5A DNA MER1_type 13 106 -83 1254 185 21 110 chr13 18802359 18802694 -83070475 - AluYb8 SINE Alu -13 305 1 2389 71 7 0 chr13 18803488 18803783 -83069386 + AluSq SINE Alu 2 298 -15 422 272 144 15 chr13 18804636 18804831 -83068338 - MIR SINE MIR 0 262 43 21 0 0 0 chr13 18805214 18805235 -83067934 + AT_rich Low_complexity Low_complexity 1 21 0 611 261 46 0 chr13 18805367 18805562 -83067607 - L1ME1 LINE L1 -5 6161 5958 22 35 0 0 chr13 18806757 18806786 -83066383 + AT_rich Low_complexity Low_complexity 1 29 0 1953 149 3 3 chr13 18807249 18807585 -83065584 + AluSx SINE Alu 1 336 0 582 184 0 9 chr13 18808712 18808821 -83064348 + FLAM_A SINE Alu 12 119 -23 27 0 0 0 chr13 18808966 18808993 -83064176 + AT_rich Low_complexity Low_complexity 1 27 0 224 282 0 42 chr13 18809167 18809238 -83063931 + L2 LINE L2 3205 3272 0 2796 16 0 0 chr13 18809969 18810276 -83062893 + AluYa5 SINE Alu 1 307 -4 21 36 0 0 chr13 18810323 18810351 -83062818 + AT_rich Low_complexity Low_complexity 1 28 0 748 234 22 22 chr13 18810353 18810537 -83062632 - MIR SINE MIR -1 261 78 25 31 0 0 chr13 18810696 18810728 -83062441 + AT_rich Low_complexity Low_complexity 1 32 0 1011 37 7 22 chr13 18811374 18811509 -83061660 - L1PA8 LINE L1 0 6172 6040 1809 84 14 0 chr13 18811510 18811785 -83061384 + L1PA8 LINE L1 5096 5374 -772 183 80 0 0 chr13 18811883 18811908 -83061261 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 6492 52 11 7 chr13 18815472 18816302 -83056867 + L1PA8 LINE L1 5340 6172 0 23 0 0 0 chr13 18816690 18816713 -83056456 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 18817634 18817660 -83055509 + AT_rich Low_complexity Low_complexity 1 26 0 233 214 0 36 chr13 18818981 18819037 -83054132 + L2 LINE L2 3251 3304 -9 2448 121 70 16 chr13 18820228 18820657 -83052512 - Tigger2 DNA MER2_type 0 2718 2267 445 123 0 0 chr13 18820643 18820708 -83052461 - Tigger2 DNA MER2_type -2651 67 3 * 23 54 0 0 chr13 18821550 18821587 -83051582 + AT_rich Low_complexity Low_complexity 1 37 0 1048 155 26 58 chr13 18821711 18821937 -83051232 - MER20 DNA MER1_type 0 219 1 779 264 62 7 chr13 18822599 18822887 -83050282 + MER46C DNA MER2_type 22 325 -13 2143 115 0 7 chr13 18823111 18823406 -83049763 - AluSq SINE Alu -19 294 2 314 317 48 36 chr13 18824259 18824426 -83048743 + L3 LINE CR1 520 688 -889 1650 193 74 20 chr13 18824426 18824779 -83048390 - MLT1A2 LTR MaLR 0 374 3 251 371 73 8 chr13 18825184 18825308 -83047861 + L2 LINE L2 3121 3252 -20 199 315 14 82 chr13 18825323 18825469 -83047700 + L3 LINE CR1 1084 1219 -358 214 246 312 14 chr13 18825548 18825686 -83047483 + MIR SINE MIR 72 250 -12 191 114 29 0 chr13 18825719 18825754 -83047415 + CT-rich Low_complexity Low_complexity 2 37 0 375 339 0 0 chr13 18825900 18826009 -83047160 + L3 LINE CR1 1236 1344 -233 2020 117 0 27 chr13 18826722 18827020 -83046149 - AluSx SINE Alu -22 290 1 205 320 40 0 chr13 18827093 18827168 -83046001 - MIR SINE MIR -113 149 72 2049 43 122 4 chr13 18828256 18828534 -83044635 - AluY SINE Alu 0 311 1 336 311 89 0 chr13 18829300 18829435 -83043734 + MIR SINE MIR 103 249 -13 992 208 50 0 chr13 18829446 18829686 -83043483 + L1MB7 LINE L1 5933 6184 0 217 265 44 15 chr13 18830058 18830126 -83043043 - L2 LINE L2 0 3313 3244 * 1647 279 113 10 chr13 18830114 18830724 -83042445 - L2 LINE L2 -933 2381 1709 608 324 40 14 chr13 18830937 18831159 -83042010 + MIR SINE MIR 2 229 -33 377 299 170 10 chr13 18831224 18831418 -83041751 + MIR SINE MIR 6 230 -32 21 0 0 0 chr13 18831422 18831443 -83041726 + AT_rich Low_complexity Low_complexity 1 21 0 2332 81 0 28 chr13 18831810 18832132 -83041037 + AluSq SINE Alu 1 313 0 207 284 75 0 chr13 18833627 18833694 -83039475 + MIR SINE MIR 118 189 -73 198 0 0 0 chr13 18835161 18835183 -83037986 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 7790 19 0 4 chr13 18835186 18836183 -83036986 - L1PA3 LINE L1 -3 6152 5157 245 277 78 42 chr13 18836489 18836655 -83036514 + MIR SINE MIR 47 218 -44 755 222 113 5 chr13 18837406 18837600 -83035569 - MIR SINE MIR 0 262 48 2273 98 0 7 chr13 18838075 18838372 -83034797 - AluSc SINE Alu -10 299 5 294 314 0 0 chr13 18838863 18838949 -83034220 - L2 LINE L2 0 3313 3228 184 242 0 0 chr13 18839811 18839844 -83033325 + L3 LINE CR1 674 706 -871 190 285 271 0 chr13 18840107 18840251 -83032918 - MIR SINE MIR -29 233 51 220 278 56 0 chr13 18840345 18840417 -83032752 - L2 LINE L2 -51 3262 3187 2335 99 3 0 chr13 18842584 18842886 -83030283 + AluSq SINE Alu 1 303 -10 243 61 0 0 chr13 18845579 18845612 -83027557 + (CAT)n Simple_repeat Simple_repeat 3 35 0 21 0 0 0 chr13 18845639 18845660 -83027509 + AT_rich Low_complexity Low_complexity 1 21 0 225 154 0 0 chr13 18845808 18845847 -83027322 + (TA)n Simple_repeat Simple_repeat 1 39 0 1180 72 13 0 chr13 18845847 18845999 -83027170 - AluY SINE Alu -16 295 142 213 246 15 15 chr13 18846003 18846068 -83027101 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 6083 6 0 3 chr13 18846123 18846808 -83026361 - L1PA2 LINE L1 0 6155 5473 438 0 0 0 chr13 18846808 18846858 -83026311 + L1PA2 LINE L1 5427 5476 -679 24 67 0 0 chr13 18846863 18846908 -83026261 + AT_rich Low_complexity Low_complexity 1 45 0 531 220 113 28 chr13 18848035 18848212 -83024957 + L2 LINE L2 2994 3185 -128 1639 270 105 0 chr13 18848298 18848757 -83024412 - LTR40a LTR ERVL -10 509 3 531 267 38 129 chr13 18848931 18849302 -83023867 + L2 LINE L2 2967 3303 -10 330 320 105 0 chr13 18849421 18849574 -83023595 + L2 LINE L2 3096 3264 -8 288 327 77 39 chr13 18849679 18849887 -83023282 + L3 LINE CR1 1311 1526 -51 221 375 111 14 chr13 18850114 18850258 -83022911 + L2 LINE L2 3115 3272 0 527 248 33 79 chr13 18852652 18852866 -83020303 - MER63A DNA MER1_type -6 204 1 275 304 98 20 chr13 18854001 18854103 -83019066 - MIR3 SINE MIR -93 115 6 1026 140 21 16 chr13 18854589 18854782 -83018387 - L1MA8 LINE L1 0 6291 6098 1004 110 7 19 chr13 18854790 18854945 -83018224 - FRAM SINE Alu -23 153 1 4975 117 19 21 chr13 18854947 18855793 -83017376 - L1MA8 LINE L1 -175 6116 5273 180 222 79 16 chr13 18856821 18856884 -83016285 - L2 LINE L2 -1 3271 3205 1975 147 0 3 chr13 18856886 18857185 -83015984 - AluSx SINE Alu -14 298 1 198 0 0 0 chr13 18857377 18857399 -83015770 + (TA)n Simple_repeat Simple_repeat 2 23 0 357 196 10 82 chr13 18857399 18857496 -83015673 - L1MC4 LINE L1 -1339 6703 6614 245 267 57 19 chr13 18857544 18857649 -83015520 + L1MC4 LINE L1 7924 8032 -10 406 231 101 53 chr13 18857758 18857966 -83015203 - HAL1 LINE L1 0 2507 2290 1274 276 123 45 chr13 18858074 18858412 -83014757 - HAL1 LINE L1 -394 2113 1803 1975 170 88 5 chr13 18858412 18858811 -83014358 - MSTB1 LTR MaLR 0 432 1 1274 276 123 45 chr13 18858811 18859541 -83013628 - HAL1 LINE L1 -704 1803 962 5277 142 102 119 chr13 18861180 18862047 -83011122 + L1MC3 LINE L1 6194 7120 -665 257 326 0 11 chr13 18862047 18862139 -83011030 + MLT1F1 LTR MaLR 35 125 -442 5277 142 102 119 chr13 18862139 18862668 -83010501 + L1MC3 LINE L1 7120 7656 -129 473 174 0 0 chr13 18862652 18862738 -83010431 - L1 LINE L1 -1062 5084 4999 * 726 130 9 0 chr13 18862740 18862848 -83010321 + FRAM SINE Alu 54 162 -14 218 171 0 0 chr13 18863117 18863152 -83010017 + (TG)n Simple_repeat Simple_repeat 1 35 0 444 282 53 73 chr13 18863858 18864064 -83009105 + MIR SINE MIR 13 214 -48 272 315 18 36 chr13 18864587 18864698 -83008471 + MIR3 SINE MIR 97 205 -3 3659 135 33 61 chr13 18864915 18864995 -83008174 - L1MA4 LINE L1 0 6300 6219 2229 103 0 0 chr13 18864995 18865301 -83007868 + AluSx SINE Alu 1 306 0 3659 135 33 61 chr13 18865301 18865954 -83007215 - L1MA4 LINE L1 -81 6219 5587 2333 155 41 56 chr13 18866325 18866810 -83006359 - MER66A LTR ERV1 0 478 1 970 147 6 6 chr13 18867077 18867234 -83005935 + FRAM SINE Alu 1 156 -20 270 281 12 0 chr13 18867525 18867607 -83005562 + GA-rich Low_complexity Low_complexity 2 84 0 434 211 100 0 chr13 18868005 18868095 -83005074 - MER63 DNA MER1_type -311 751 27 21 71 0 0 chr13 18868449 18868491 -83004678 + AT_rich Low_complexity Low_complexity 1 42 0 2139 96 4 0 chr13 18868862 18869133 -83004036 - AluSp SINE Alu -38 275 4 247 344 158 9 chr13 18869134 18869355 -83003814 - MIR SINE MIR -7 255 2 2385 89 0 6 chr13 18870336 18870650 -83002519 + AluSx SINE Alu 1 312 0 239 286 14 0 chr13 18871281 18871351 -83001818 + (TA)n Simple_repeat Simple_repeat 1 71 0 627 266 91 24 chr13 18871445 18871697 -83001472 + MARNA DNA Mariner 164 432 -154 2205 105 0 26 chr13 18872172 18872476 -83000693 + AluSq SINE Alu 1 296 -17 411 256 113 34 chr13 18872743 18872934 -83000235 + MIR SINE MIR 45 244 -18 260 298 158 93 chr13 18873315 18873590 -82999579 - L2 LINE L2 -4 3268 2955 3943 127 46 0 chr13 18873590 18874197 -82998972 - MER41B LTR ERV1 0 635 1 260 298 158 93 chr13 18874197 18874340 -82998829 - L2 LINE L2 -317 2955 2823 1709 153 14 4 chr13 18874747 18875051 -82998118 + AluJb SINE Alu 1 307 0 1985 138 49 18 chr13 18875332 18875659 -82997510 + MER1B DNA MER1_type 1 337 0 22 80 0 0 chr13 18875763 18875813 -82997356 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr13 18876942 18876966 -82996203 + AT_rich Low_complexity Low_complexity 1 24 0 1338 199 3 31 chr13 18877086 18877403 -82995766 - L1MB7 LINE L1 -237 6445 6138 * 4498 200 16 40 chr13 18877402 18877509 -82995660 - L1MB7 LINE L1 -1194 5450 5342 2406 109 0 0 chr13 18877509 18877822 -82995347 + AluSp SINE Alu 1 313 0 4498 200 16 40 chr13 18877822 18878583 -82994586 - L1MB7 LINE L1 -1302 5342 4616 2247 88 26 0 chr13 18878583 18878888 -82994281 + AluSq SINE Alu 1 313 0 4498 200 16 40 chr13 18878888 18879183 -82993986 - L1MB7 LINE L1 -2028 4616 4315 781 241 82 124 chr13 18879192 18879682 -82993487 + MLT2B1 LTR ERVL 86 554 0 5305 250 39 34 chr13 18879683 18882116 -82991053 - L1MB7 LINE L1 -2310 4334 1936 490 185 11 35 chr13 18882115 18882239 -82990930 - L1MB7 LINE L1 -5028 1514 1413 * 806 217 59 10 chr13 18882231 18882434 -82990735 - L1MB7 LINE L1 -6303 239 27 2018 183 58 22 chr13 18882514 18882929 -82990240 - MSTB1 LTR MaLR -2 430 1 330 320 105 0 chr13 18883525 18883678 -82989491 - L2 LINE L2 -8 3264 3096 467 303 8 8 chr13 18883797 18883929 -82989240 - L2 LINE L2 -10 3303 3172 222 123 27 68 chr13 18883948 18884021 -82989148 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 25 0 0 0 chr13 18884999 18885024 -82988145 + AT_rich Low_complexity Low_complexity 1 25 0 1210 163 97 10 chr13 18886742 18887030 -82986139 + MER33 DNA MER1_type 2 314 -10 212 250 18 0 chr13 18888138 18888194 -82984975 - MIR3 SINE MIR -2 206 150 22 0 0 0 chr13 18888216 18888238 -82984931 + AT_rich Low_complexity Low_complexity 1 22 0 305 259 148 0 chr13 18888559 18888640 -82984529 - L2 LINE L2 -19 3253 3161 396 59 0 0 chr13 18888678 18888729 -82984440 + (GA)n Simple_repeat Simple_repeat 2 52 0 43564 32 24 2 chr13 18889470 18895505 -82977664 + L1PA2 LINE L1 1 6175 0 207 209 0 0 chr13 18895524 18895567 -82977602 + A-rich Low_complexity Low_complexity 1 43 0 195 308 26 0 chr13 18896842 18896920 -82976249 - MIR SINE MIR -104 158 79 3588 69 0 0 chr13 18897518 18897980 -82975189 - L1PA8 LINE L1 -7 6165 5704 1889 118 65 7 chr13 18898829 18899137 -82974032 + AluJb SINE Alu 1 312 0 541 197 51 8 chr13 18899260 18899377 -82973792 - L2 LINE L2 -1 3312 3191 396 245 177 55 chr13 18899796 18900339 -82972830 - L1ME4a LINE L1 -5 6116 5508 183 129 0 0 chr13 18900379 18900410 -82972759 + (CA)n Simple_repeat Simple_repeat 1 31 0 419 254 16 16 chr13 18902163 18902289 -82970880 - MIR3 SINE MIR 0 208 83 2230 118 3 0 chr13 18902459 18902756 -82970413 + AluSp SINE Alu 1 298 -15 194 289 0 0 chr13 18902847 18902899 -82970270 - L2 LINE L2 0 3313 3262 34 55 0 0 chr13 18903144 18903199 -82969970 + AT_rich Low_complexity Low_complexity 1 55 0 2207 124 0 0 chr13 18904436 18904734 -82968435 - AluSx SINE Alu -14 298 1 264 214 0 60 chr13 18904925 18905009 -82968160 - L1MC5 LINE L1 -212 7749 7671 22 35 0 0 chr13 18905406 18905435 -82967734 + AT_rich Low_complexity Low_complexity 1 29 0 1770 188 59 37 chr13 18906942 18907347 -82965822 - MLT2D LTR ERVL 0 414 1 1908 126 47 20 chr13 18907478 18907779 -82965390 + AluSq SINE Alu 1 309 -4 296 198 39 110 chr13 18910037 18910182 -82962987 - MIR SINE MIR -61 147 59 360 274 65 24 chr13 18910911 18911035 -82962134 + MER94 DNA DNA 1 129 -5 21 0 0 0 chr13 18911694 18911715 -82961454 + AT_rich Low_complexity Low_complexity 1 21 0 1257 198 53 76 chr13 18911916 18912035 -82961134 - MER39 LTR ERV1 -4 703 583 1724 173 10 10 chr13 18912035 18912324 -82960845 - AluJb SINE Alu -23 289 1 1257 198 53 76 chr13 18912324 18912598 -82960571 - MER39 LTR ERV1 -124 583 319 318 308 10 0 chr13 18912588 18912692 -82960477 - LTR48B LTR ERV1 -539 105 1 * 24 0 0 0 chr13 18913780 18913804 -82959365 + AT_rich Low_complexity Low_complexity 1 24 0 1247 177 12 49 chr13 18913853 18914096 -82959073 + AluJo SINE Alu 2 235 -77 2299 96 0 0 chr13 18914150 18914441 -82958728 + AluSq SINE Alu 19 309 -4 761 107 16 8 chr13 18916077 18916198 -82956971 - L1MA2 LINE L1 0 6304 6183 1507 110 5 14 chr13 18916355 18916564 -82956605 - AluSx SINE Alu -105 207 1 2432 98 3 0 chr13 18917375 18917682 -82955487 - AluSg SINE Alu -2 308 1 243 0 0 0 chr13 18918779 18918806 -82954363 + (TG)n Simple_repeat Simple_repeat 1 27 0 1715 88 8 0 chr13 18919946 18920184 -82952985 - L1MA1 LINE L1 -4 6298 6059 809 185 0 0 chr13 18920425 18920560 -82952609 + FRAM SINE Alu 12 146 -30 180 0 0 0 chr13 18920563 18920583 -82952586 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2020 145 7 7 chr13 18920640 18920943 -82952226 + AluSx SINE Alu 1 303 -9 351 113 0 0 chr13 18921219 18921272 -82951897 + (TCCC)n Simple_repeat Simple_repeat 3 55 0 198 0 0 0 chr13 18921276 18921298 -82951871 + (TTTTC)n Simple_repeat Simple_repeat 3 24 0 856 161 13 20 chr13 18921301 18921450 -82951719 - FRAM SINE Alu -28 148 1 3130 116 8 47 chr13 18921672 18922061 -82951108 + L1MB3 LINE L1 5436 5800 -383 1733 144 45 6 chr13 18922061 18922360 -82950809 + L1MC1 LINE L1 6003 6326 -7 3130 116 8 47 chr13 18922360 18922498 -82950671 + L1MB3 LINE L1 5800 5942 -241 691 218 21 21 chr13 18922533 18922721 -82950448 - L1M4 LINE L1 -3714 2432 2245 831 165 0 0 chr13 18922726 18922853 -82950316 + FLAM_C SINE Alu 1 127 -6 1103 132 5 21 chr13 18922877 18923091 -82950078 + MER1B DNA MER1_type 56 335 -4 915 202 61 45 chr13 18923159 18923221 -82949948 + L1MB3 LINE L1 5932 5992 -191 1782 152 21 0 chr13 18923221 18923510 -82949659 - AluJb SINE Alu -17 295 1 915 202 61 45 chr13 18923510 18923694 -82949475 + L1MB3 LINE L1 5992 6182 -1 379 227 136 39 chr13 18924606 18924760 -82948409 + MIR SINE MIR 94 262 0 2340 101 10 0 chr13 18925178 18925485 -82947684 + AluSx SINE Alu 1 310 -2 2760 16 0 13 chr13 18926850 18927158 -82946011 + AluYa5 SINE Alu 1 304 -7 235 311 59 0 chr13 18928610 18928745 -82944424 + MIR SINE MIR 84 226 -36 1988 203 0 18 chr13 18928745 18928884 -82944285 - MLT1B LTR MaLR 0 390 250 2079 134 156 5 chr13 18928884 18929256 -82943913 - MSTA LTR MaLR 0 428 1 1988 203 0 18 chr13 18929256 18929506 -82943663 - MLT1B LTR MaLR -140 250 8 204 40 0 0 chr13 18930039 18930064 -82943105 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 182 209 23 0 chr13 18930067 18930110 -82943059 - L2 LINE L2 -25 3247 3204 465 173 0 0 chr13 18931323 18931398 -82941771 + FRAM SINE Alu 43 117 -59 2312 114 0 0 chr13 18931904 18932203 -82940966 - AluSq SINE Alu -14 299 1 1375 203 12 103 chr13 18932878 18933277 -82939892 - MLT1A1 LTR MaLR 0 365 3 1885 156 82 2 chr13 18933603 18933940 -82939229 - MLT1A1 LTR MaLR 0 396 1 1578 193 121 24 chr13 18934072 18934492 -82938677 - MLT1C LTR MaLR -6 461 1 1825 160 7 0 chr13 18935320 18935620 -82937549 - L1MB3 LINE L1 -59 6124 5823 1133 131 15 45 chr13 18935625 18935824 -82937345 - AluSg/x SINE Alu 0 312 120 10949 62 18 10 chr13 18935833 18937208 -82935961 - SVA Other Other 0 1386 1 1967 186 15 33 chr13 18937220 18937700 -82935469 - L1MB2 LINE L1 -339 5832 5353 1736 169 48 24 chr13 18938666 18938997 -82934172 - MER58B DNA MER1_type 0 341 3 2006 156 64 22 chr13 18939735 18940095 -82933074 - THE1C LTR MaLR 0 375 1 319 322 114 20 chr13 18940464 18940613 -82932556 - MIR3 SINE MIR -9 199 37 2768 182 22 0 chr13 18941090 18941547 -82931622 - MLT1C LTR MaLR 0 467 1 311 343 122 6 chr13 18942456 18942637 -82930532 - MIR SINE MIR -60 202 1 1413 159 126 4 chr13 18942937 18943208 -82929961 + AluJo SINE Alu 1 304 -8 375 127 0 0 chr13 18943776 18943839 -82929330 + (CA)n Simple_repeat Simple_repeat 1 63 0 458 293 142 29 chr13 18944029 18944275 -82928894 + Charlie8 DNA MER1_type 3 276 -2141 362 145 16 0 chr13 18944330 18944392 -82928777 + Charlie8 DNA MER1_type 2341 2403 -14 620 301 28 0 chr13 18945551 18945727 -82927442 - MIR SINE MIR -22 240 60 1697 179 78 29 chr13 18945769 18946115 -82927054 + MLT1A1 LTR MaLR 1 363 -2 28 29 0 0 chr13 18946591 18946626 -82926543 + AT_rich Low_complexity Low_complexity 1 35 0 200 100 0 0 chr13 18948130 18948160 -82925009 + MIR SINE MIR 125 154 -108 299 308 38 15 chr13 18948347 18948480 -82924689 - MIR3 SINE MIR -71 137 2 283 286 14 0 chr13 18949722 18949792 -82923377 + L2 LINE L2 3240 3310 -3 712 65 9 9 chr13 18950019 18950127 -82923042 + (TCCA)n Simple_repeat Simple_repeat 1 108 0 340 258 21 0 chr13 18952034 18952127 -82921042 - MER103 DNA DNA 0 166 72 27 0 0 0 chr13 18953378 18953405 -82919764 + AT_rich Low_complexity Low_complexity 1 27 0 1636 180 36 4 chr13 18955060 18955338 -82917831 + AluJb SINE Alu 5 291 -21 2236 87 7 0 chr13 18956160 18956474 -82916695 + AluSp SINE Alu 1 313 0 2027 184 63 20 chr13 18957918 18958364 -82914805 - MLT1C LTR MaLR 0 467 3 555 256 63 59 chr13 18958536 18958774 -82914395 + L3 LINE CR1 383 621 -956 2276 79 0 54 chr13 18958877 18959192 -82913977 + AluY SINE Alu 1 298 -13 201 365 77 0 chr13 18959235 18959339 -82913830 + L3 LINE CR1 714 825 -752 282 237 0 0 chr13 18959733 18959809 -82913360 + (TG)n Simple_repeat Simple_repeat 2 77 0 551 111 0 12 chr13 18960116 18960197 -82912972 - MADE1 DNA Mariner 0 80 1 234 226 0 48 chr13 18960935 18960997 -82912172 - L2 LINE L2 -1 3312 3254 347 96 0 0 chr13 18961050 18961102 -82912067 - Alu SINE Alu -2 298 247 1604 100 0 0 chr13 18961125 18961335 -82911834 - AluSg/x SINE Alu -16 294 85 1838 136 49 0 chr13 18961664 18961951 -82911218 + AluJb SINE Alu 1 301 -11 392 330 70 48 chr13 18962540 18962720 -82910449 - L3 LINE CR1 -1 1576 1387 2293 96 0 0 chr13 18962720 18963012 -82910157 - AluY SINE Alu -19 292 1 392 330 70 48 chr13 18963012 18963101 -82910068 - L3 LINE CR1 -190 1387 1301 21 0 0 0 chr13 18963506 18963527 -82909642 + AT_rich Low_complexity Low_complexity 1 21 0 2428 77 0 13 chr13 18964087 18964397 -82908772 + AluY SINE Alu 1 306 -5 231 346 83 20 chr13 18965152 18965406 -82907763 + L2 LINE L2 1939 2208 -1106 374 236 94 16 chr13 18965469 18965596 -82907573 - MIR SINE MIR -89 173 37 417 374 15 8 chr13 18965644 18965906 -82907263 + L2 LINE L2 2241 2504 -810 245 346 34 63 chr13 18966144 18966349 -82906820 + L2 LINE L2 2851 3049 -223 310 99 0 0 chr13 18966575 18966624 -82906545 - MLT2C2 LTR ERVL 0 464 422 2259 109 27 56 chr13 18966647 18967022 -82906147 + THE1B LTR MaLR 1 364 0 3965 121 36 2 chr13 18967024 18967723 -82905446 + THE1B-int LTR MaLR 3 752 -828 335 250 149 42 chr13 18969850 18970018 -82903151 - MER5A DNA MER1_type 0 189 4 792 217 30 6 chr13 18970031 18970197 -82902972 + MER5A DNA MER1_type 17 186 -3 2135 133 0 3 chr13 18970757 18971065 -82902104 + AluSx SINE Alu 3 309 -3 2561 50 3 0 chr13 18971525 18971823 -82901346 + AluY SINE Alu 1 299 -12 926 69 15 0 chr13 18971867 18971997 -82901172 + (TTTC)n Simple_repeat Simple_repeat 3 134 0 1159 145 224 59 chr13 18973137 18973392 -82899777 + AluSg SINE Alu 1 297 -3 277 318 33 26 chr13 18973642 18973793 -82899376 - MIR SINE MIR -79 183 32 242 231 125 58 chr13 18974134 18974238 -82898931 - L2 LINE L2 -1 3271 3161 430 94 0 0 chr13 18974590 18974643 -82898526 - Alu SINE Alu -20 292 240 1746 187 13 10 chr13 18974894 18975204 -82897965 + AluJo SINE Alu 1 311 -1 2909 0 0 0 chr13 18975255 18975562 -82897607 - AluYa5 SINE Alu -4 307 1 21 0 0 0 chr13 18976177 18976198 -82896971 + AT_rich Low_complexity Low_complexity 1 21 0 568 91 13 0 chr13 18978050 18978127 -82895042 + MADE1 DNA Mariner 1 78 -2 248 353 76 8 chr13 18978252 18978371 -82894798 + MIR SINE MIR 20 146 -116 347 304 35 94 chr13 18978443 18978870 -82894299 + L2 LINE L2 2461 2862 -452 4296 125 7 0 chr13 18979103 18979701 -82893468 - LTR43 LTR ERV1 0 602 1 565 278 84 16 chr13 18979773 18979964 -82893205 + MIR SINE MIR 1 204 -58 217 359 0 0 chr13 18983410 18983488 -82889681 + MIR SINE MIR 49 126 -82 184 184 0 26 chr13 18984295 18984333 -82888836 - L2 LINE L2 -15 3257 3221 387 60 0 0 chr13 18984750 18984800 -82888369 + (CA)n Simple_repeat Simple_repeat 2 51 0 23 33 0 0 chr13 18986735 18986765 -82886404 + AT_rich Low_complexity Low_complexity 1 30 0 333 68 0 0 chr13 18989113 18989157 -82884012 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 31 58 0 0 chr13 18991352 18991404 -82881765 + AT_rich Low_complexity Low_complexity 1 52 0 2106 132 0 0 chr13 18991518 18991805 -82881364 - AluSx SINE Alu -23 289 3 197 284 30 15 chr13 18992052 18992119 -82881050 + L3 LINE CR1 1386 1453 -124 222 344 50 32 chr13 18992871 18993092 -82880077 - L2 LINE L2 -221 3051 2827 1870 147 0 11 chr13 18993409 18993694 -82879475 + AluJo SINE Alu 1 282 -30 263 313 76 15 chr13 18993756 18993887 -82879282 + MER91C DNA MER1_type 1 139 -1 252 0 0 0 chr13 18994505 18994533 -82878636 + (TG)n Simple_repeat Simple_repeat 1 28 0 1278 147 13 55 chr13 18995512 18995750 -82877419 + AluJo SINE Alu 85 312 0 203 86 0 29 chr13 18997231 18997266 -82875903 + (TGAG)n Simple_repeat Simple_repeat 2 35 0 303 140 0 0 chr13 18997423 18997473 -82875696 + (TATG)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr13 18997506 18997531 -82875638 + AT_rich Low_complexity Low_complexity 1 25 0 253 283 100 99 chr13 18998077 18998538 -82874631 + L3 LINE CR1 476 990 -587 432 333 55 52 chr13 18998621 18998951 -82874218 + L3 LINE CR1 1193 1523 -54 610 295 25 17 chr13 18999210 18999453 -82873716 + L1ME LINE L1 5451 5672 -449 785 300 14 18 chr13 18999586 18999809 -82873360 + MIR SINE MIR 29 250 -12 229 236 91 36 chr13 18999841 18999951 -82873218 + L1ME LINE L1 5777 5892 -229 2407 86 0 0 chr13 19000566 19000867 -82872302 - AluSq SINE Alu -11 302 2 270 315 11 0 chr13 19001185 19001277 -82871892 - L1ME LINE L1 -303 5818 5726 278 308 33 33 chr13 19002200 19002320 -82870849 - MIR SINE MIR -115 147 28 180 0 0 0 chr13 19002513 19002533 -82870636 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 306 241 72 33 chr13 19002791 19002938 -82870231 + MIR SINE MIR 61 211 -51 25 0 0 0 chr13 19003126 19003151 -82870018 + AT_rich Low_complexity Low_complexity 1 25 0 1986 147 10 10 chr13 19003604 19003916 -82869253 - AluSx SINE Alu 0 312 1 516 234 33 181 chr13 19004555 19004953 -82868216 + L2 LINE L2 2974 3312 -1 192 385 24 0 chr13 19005022 19005105 -82868064 - L2 LINE L2 -219 3053 2969 770 117 50 0 chr13 19005145 19005265 -82867904 + L1MB3 LINE L1 6054 6179 -4 1786 177 0 7 chr13 19006883 19007183 -82865986 + AluSx SINE Alu 1 298 -14 362 205 291 8 chr13 19007490 19007617 -82865552 - MER5A DNA MER1_type 0 189 27 201 163 0 0 chr13 19007732 19007749 -82865420 + (TAA)n Simple_repeat Simple_repeat 1 17 -32 2080 129 3 0 chr13 19007749 19008036 -82865133 + AluSx SINE Alu 1 288 -24 201 163 0 0 chr13 19008036 19008047 -82865122 + (TAA)n Simple_repeat Simple_repeat 17 27 -22 2036 132 0 10 chr13 19008047 19008335 -82864834 + AluSx SINE Alu 1 285 -27 201 163 0 0 chr13 19008335 19008354 -82864815 + (TAA)n Simple_repeat Simple_repeat 26 49 0 429 292 61 37 chr13 19009207 19009377 -82863792 - MIR SINE MIR -63 145 23 1259 136 0 25 chr13 19010126 19010324 -82862845 - AluJb SINE Alu -7 305 113 1805 158 3 22 chr13 19011458 19011774 -82861395 + AluSx SINE Alu 1 310 -2 358 296 37 69 chr13 19012083 19012272 -82860897 + MIR SINE MIR 73 255 -7 2338 100 3 0 chr13 19012931 19013231 -82859938 + AluSp SINE Alu 1 301 -12 249 321 45 52 chr13 19013259 19013393 -82859776 + MER5B DNA MER1_type 41 173 -5 205 156 0 0 chr13 19014799 19014831 -82858338 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 222 0 0 chr13 19015446 19015482 -82857687 - L3 LINE CR1 -86 1491 1456 2190 103 6 25 chr13 19016019 19016338 -82856831 - AluSp SINE Alu 0 313 1 373 318 9 9 chr13 19017305 19017415 -82855754 + L2 LINE L2 3163 3272 0 427 215 103 9 chr13 19017643 19017750 -82855419 - L2 LINE L2 0 3313 3197 195 247 101 45 chr13 19017939 19018028 -82855141 + L3b LINE CR1 1343 1436 -147 233 224 0 0 chr13 19018441 19018490 -82854679 + T-rich Low_complexity Low_complexity 2 50 0 26 30 0 0 chr13 19018840 19018873 -82854296 + AT_rich Low_complexity Low_complexity 1 33 0 329 170 32 11 chr13 19022705 19022799 -82850370 + (TA)n Simple_repeat Simple_repeat 2 97 0 862 225 63 28 chr13 19023197 19023450 -82849719 - L1ME3A LINE L1 0 6170 5909 361 60 20 0 chr13 19025986 19026036 -82847133 + Alu SINE Alu 1 51 -251 349 349 176 6 chr13 19034212 19034542 -82838627 + L3 LINE CR1 709 1094 -483 683 162 8 17 chr13 19034544 19034661 -82838508 - FLAM_A SINE Alu -8 134 19 721 331 23 43 chr13 19034661 19034808 -82838361 + L3 LINE CR1 1234 1382 -195 1596 59 0 20 chr13 19034808 19035010 -82838159 - AluY SINE Alu 0 311 114 721 331 23 43 chr13 19035010 19035209 -82837960 + L3 LINE CR1 1382 1573 -4 550 323 0 12 chr13 19138041 19138208 -82734961 + MIR3 SINE MIR 33 197 -11 188 243 108 14 chr13 19141283 19141357 -82731812 - MIR SINE MIR -109 153 73 701 322 90 52 chr13 19141771 19142808 -82730361 + L2 LINE L2 2175 3272 0 28 29 0 0 chr13 19142822 19142857 -82730312 + AT_rich Low_complexity Low_complexity 1 35 0 1383 153 133 7 chr13 19143207 19143507 -82729662 - MER44D DNA MER2_type -1 608 1 2252 93 3 7 chr13 19143566 19143855 -82729314 - AluSx SINE Alu -24 288 1 371 282 200 12 chr13 19144323 19144493 -82728676 + MIR SINE MIR 32 233 -29 2011 125 0 29 chr13 19145342 19145654 -82727515 - AluSx SINE Alu -9 303 1 2483 73 0 10 chr13 19145667 19145980 -82727189 - AluSg SINE Alu 0 310 1 2481 60 7 0 chr13 19145980 19146280 -82726889 - AluSq SINE Alu -11 302 1 2521 196 144 43 chr13 19147659 19148409 -82724760 - LTR1B LTR ERV1 0 826 1 2801 138 15 4 chr13 19148522 19148978 -82724191 + MER4C LTR ERV1 1 461 -4 300 332 183 30 chr13 19151232 19151533 -82721636 + L2 LINE L2 2925 3271 -1 281 352 23 8 chr13 19151802 19151930 -82721239 + MER5B DNA MER1_type 1 130 -48 467 179 32 21 chr13 19151937 19152032 -82721137 - L1MC1 LINE L1 -9 6324 6229 526 307 56 42 chr13 19152128 19152343 -82720826 - MIR SINE MIR -34 228 11 25 31 0 0 chr13 19152700 19152732 -82720437 + AT_rich Low_complexity Low_complexity 1 32 0 522 315 90 2 chr13 19153008 19153421 -82719748 + L1M4 LINE L1 3719 4167 -1979 228 85 38 66 chr13 19154305 19154411 -82718758 + (TAAA)n Simple_repeat Simple_repeat 1 103 0 320 250 0 0 chr13 19154963 19155043 -82718126 - Tigger2a DNA MER2_type -354 80 1 607 283 124 13 chr13 19156377 19156603 -82716566 - MIR SINE MIR 0 262 12 292 148 19 0 chr13 19157230 19157284 -82715885 + MER116 DNA Mariner 1 55 -25 1631 165 77 9 chr13 19157883 19158223 -82714946 - MLT2C1 LTR ERVL 0 397 35 692 258 50 0 chr13 19158242 19158424 -82714745 - MIR SINE MIR -59 203 13 295 287 79 30 chr13 19159849 19159950 -82713219 + MIR SINE MIR 2 107 -155 2039 88 11 18 chr13 19160287 19160595 -82712574 + AluSp SINE Alu 2 307 0 1417 54 0 0 chr13 19160595 19160762 -82712407 + AluSp SINE Alu 135 301 -12 2462 151 112 78 chr13 19161574 19162110 -82711059 - MLT2B3 LTR ERVL 0 554 1 502 275 163 0 chr13 19162380 19162540 -82710629 - MIR SINE MIR -2 260 75 28 0 0 0 chr13 19163732 19163760 -82709409 + AT_rich Low_complexity Low_complexity 1 28 0 1577 199 48 3 chr13 19163953 19164244 -82708925 - AluSx SINE Alu -8 304 1 879 193 113 0 chr13 19164389 19164602 -82708567 + MSTD-int LTR MaLR 1499 1735 0 1254 228 94 32 chr13 19164602 19164975 -82708194 + MSTD LTR MaLR 1 396 0 240 288 0 0 chr13 19166323 19166382 -82706787 + AluJ/FLAM SINE Alu 2 60 -242 6015 166 10 33 chr13 19166863 19167975 -82705194 + L1PA15-16 LINE L1 1 1086 -5763 1975 197 29 30 chr13 19167988 19168711 -82704458 + L1PA15-16 LINE L1 2721 3447 -3402 325 242 78 33 chr13 19169003 19169156 -82704013 + L1MEd LINE L1 1028 1187 -5018 2519 47 0 0 chr13 19169213 19169513 -82703656 + AluY SINE Alu 1 300 -11 319 265 110 40 chr13 19169566 19169766 -82703403 + L1MEd LINE L1 1475 1688 -4708 267 152 80 24 chr13 19169769 19169894 -82703275 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 0 0 0 chr13 19169909 19169931 -82703238 + AT_rich Low_complexity Low_complexity 1 22 0 477 130 91 0 chr13 19170215 19170292 -82702877 + AluJb SINE Alu 85 168 -144 1991 174 32 124 chr13 19170293 19170947 -82702222 + LTR9 LTR ERV1 1 594 -18 2856 161 25 20 chr13 19172359 19173284 -82699885 + L1M2 LINE L1 4808 5727 -573 355 164 0 0 chr13 19175542 19175603 -82697566 - L1M2c LINE L1 -4599 2569 2509 4168 140 72 12 chr13 19175610 19176376 -82696793 - Tigger1 DNA MER2_type -5 2413 1602 366 23 0 0 chr13 19176399 19176442 -82696727 + (TA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr13 19176443 19176463 -82696706 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 754 129 0 91 chr13 19176463 19176595 -82696574 - FLAM_C SINE Alu -22 121 2 1656 154 3 3 chr13 19176596 19176882 -82696287 - Tigger1 DNA MER2_type -826 1592 1307 10226 196 28 13 chr13 19177038 19179518 -82693651 - L1 LINE L1 -1168 6397 3881 1333 200 103 0 chr13 19179723 19180662 -82692507 - L1 LINE L1 -5372 2193 1107 430 217 17 25 chr13 19180661 19180781 -82692388 - L1 LINE L1 -7432 133 15 * 412 218 61 0 chr13 19180780 19180927 -82692242 - L1M2c LINE L1 -4992 2176 2021 * 763 194 117 4 chr13 19180926 19181174 -82691995 + L1 LINE L1 3113 3388 -2758 1762 161 92 34 chr13 19181183 19181563 -82691606 - MSTB1 LTR MaLR -30 402 1 2825 215 18 8 chr13 19181563 19182219 -82690950 + L1 LINE L1 3388 4050 -2096 260 276 207 0 chr13 19182477 19182564 -82690605 - MIR SINE MIR -149 113 9 24 53 0 0 chr13 19183241 19183279 -82689890 + AT_rich Low_complexity Low_complexity 1 38 0 196 263 35 0 chr13 19184423 19184480 -82688689 - L2 LINE L2 -28 3244 3186 252 86 0 0 chr13 19185030 19185065 -82688104 + (T)n Simple_repeat Simple_repeat 1 35 0 12558 144 19 60 chr13 19185666 19187825 -82685344 + L1PA12 LINE L1 482 3739 -3845 237 33 0 0 chr13 19187825 19187855 -82685314 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 12558 144 19 60 chr13 19187855 19188405 -82684764 + L1PA12 LINE L1 3739 4310 -3274 34 0 0 0 chr13 19190686 19190720 -82682449 + AT_rich Low_complexity Low_complexity 1 34 0 2374 78 0 3 chr13 19191993 19192314 -82680855 + L1PB1 LINE L1 5832 6151 0 295 319 7 14 chr13 19192335 19192476 -82680693 - MER112 DNA MER1_type -104 156 17 1637 125 8 4 chr13 19293614 19293878 -82579291 - THE1A LTR MaLR -90 265 1 1124 64 6 0 chr13 19293878 19294035 -82579134 - THE1A-int LTR MaLR 0 1580 1423 * 4651 94 39 10 chr13 19294033 19294735 -82578434 - THE1A-int LTR MaLR -857 723 2 2508 93 8 8 chr13 19294736 19295091 -82578078 - THE1A LTR MaLR 0 355 1 2156 130 0 10 chr13 19295106 19295407 -82577762 + AluSx SINE Alu 1 298 -14 636 100 33 33 chr13 19295407 19295587 -82577582 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 28 0 0 chr13 19295642 19295678 -82577491 + AT_rich Low_complexity Low_complexity 1 36 0 288 344 10 10 chr13 19296252 19296348 -82576821 + MIR SINE MIR 19 114 -94 200 200 18 0 chr13 19296881 19296936 -82576233 + CT-rich Low_complexity Low_complexity 2 57 0 318 357 16 8 chr13 19296964 19297090 -82576079 + L2 LINE L2 3185 3311 -2 2206 120 10 0 chr13 19298543 19298852 -82574317 + AluSx SINE Alu 1 312 0 2999 92 2 10 chr13 19301736 19302139 -82571030 + L1MA1 LINE L1 5903 6302 0 21 36 0 0 chr13 19306085 19306113 -82567056 + AT_rich Low_complexity Low_complexity 1 28 0 738 275 67 37 chr13 19306168 19306530 -82566639 + MLT1I LTR MaLR 52 395 -14 684 48 10 19 chr13 19309533 19309636 -82563533 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 658 262 24 12 chr13 19310842 19311010 -82562159 + MIR SINE MIR 49 218 -44 194 329 106 63 chr13 19311151 19311388 -82561781 - L2 LINE L2 0 3272 3026 201 39 0 0 chr13 19312838 19312864 -82560305 + (CA)n Simple_repeat Simple_repeat 1 26 0 374 236 68 96 chr13 19313598 19313818 -82559351 + MER112 DNA MER1_type 5 218 -42 217 273 48 100 chr13 19313913 19314056 -82559113 + L2 LINE L2 2451 2579 -735 1712 94 31 5 chr13 19314056 19314280 -82558889 + MER30 DNA MER1_type 1 230 0 217 273 48 100 chr13 19314280 19314367 -82558802 + L2 LINE L2 2579 2669 -645 389 335 109 40 chr13 19314559 19314863 -82558306 + L2 LINE L2 2932 3256 -16 190 279 110 118 chr13 19315626 19315863 -82557306 + L2 LINE L2 2954 3188 -84 297 255 57 9 chr13 19316120 19316226 -82556943 + MIR SINE MIR 74 184 -78 227 295 54 60 chr13 19316995 19317144 -82556025 + L2 LINE L2 2702 2849 -465 2083 132 7 7 chr13 19319249 19319553 -82553616 - AluSx SINE Alu -8 304 1 207 179 0 0 chr13 19320046 19320085 -82553084 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 274 0 0 chr13 19320874 19320947 -82552222 + GA-rich Low_complexity Low_complexity 4 76 0 1353 174 101 22 chr13 19321637 19321913 -82551256 + AluJb SINE Alu 1 298 -14 2342 110 3 0 chr13 19322051 19322360 -82550809 - AluSg SINE Alu 0 310 1 22 0 0 0 chr13 19322704 19322726 -82550443 + AT_rich Low_complexity Low_complexity 1 22 0 290 270 14 14 chr13 19322794 19322868 -82550301 + MIR SINE MIR 74 147 -61 442 268 12 95 chr13 19324004 19324097 -82549072 - MIR SINE MIR -27 235 161 2203 104 3 0 chr13 19324097 19324385 -82548784 + AluSp SINE Alu 5 293 -20 442 268 12 95 chr13 19324385 19324459 -82548710 - MIR SINE MIR -101 161 82 277 271 106 65 chr13 19324943 19325113 -82548056 - MIR SINE MIR -41 221 45 579 215 44 0 chr13 19327246 19327381 -82545788 + MIR SINE MIR 53 193 -69 38 40 0 27 chr13 19327544 19327578 -82545591 + AT_rich Low_complexity Low_complexity 1 34 -38 1903 124 35 18 chr13 19327578 19327861 -82545308 + AluSx SINE Alu 1 288 -24 38 40 0 27 chr13 19327861 19327900 -82545269 + AT_rich Low_complexity Low_complexity 34 72 0 995 306 98 30 chr13 19327900 19328440 -82544729 + Charlie7 DNA MER1_type 113 689 -1923 388 182 25 66 chr13 19328425 19328546 -82544623 + Charlie7 DNA MER1_type 2497 2612 0 * 333 0 0 0 chr13 19328892 19328929 -82544240 + (TG)n Simple_repeat Simple_repeat 2 38 0 2305 96 0 0 chr13 19329370 19329673 -82543496 + AluY SINE Alu 1 303 -8 822 290 38 76 chr13 19329784 19330260 -82542909 + L2 LINE L2 2851 3308 -5 240 209 0 0 chr13 19330814 19330857 -82542312 + L2 LINE L2 3219 3261 -11 2451 73 3 19 chr13 19332223 19332539 -82540630 + AluY SINE Alu 1 311 0 213 22 0 89 chr13 19332544 19332589 -82540580 + (TAAAAA)n Simple_repeat Simple_repeat 4 44 0 584 218 123 41 chr13 19333429 19333599 -82539570 - L1ME LINE L1 -382 5739 5556 236 317 122 80 chr13 19333928 19334329 -82538840 - L2 LINE L2 -2 3270 2853 204 326 11 65 chr13 19335479 19335571 -82537598 - MIR SINE MIR -95 113 27 189 0 0 0 chr13 19336998 19337019 -82536150 + (GGAA)n Simple_repeat Simple_repeat 2 22 0 270 0 0 0 chr13 19337850 19337880 -82535289 + (CA)n Simple_repeat Simple_repeat 2 31 0 207 361 78 44 chr13 19339816 19340229 -82532940 - L2 LINE L2 -337 2977 2551 463 257 77 22 chr13 19340278 19340461 -82532708 + L1MC/D LINE L1 5625 5817 -1991 248 197 0 118 chr13 19340650 19340726 -82532443 - MER91A DNA MER1_type -129 67 1 1599 175 11 7 chr13 19341185 19341454 -82531715 + AluJb SINE Alu 12 281 -31 192 40 0 0 chr13 19341458 19341483 -82531686 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 581 259 138 0 chr13 19341869 19342058 -82531111 + MIR SINE MIR 38 252 -10 76 51 0 0 chr13 19342641 19342759 -82530410 + AT_rich Low_complexity Low_complexity 1 118 0 259 221 52 39 chr13 19342865 19342942 -82530227 - L1ME4a LINE L1 -108 6013 5936 1795 149 41 16 chr13 19342973 19343288 -82529881 + MER2 DNA MER2_type 22 344 -1 372 43 0 0 chr13 19343289 19343335 -82529834 + (TG)n Simple_repeat Simple_repeat 1 46 0 251 239 14 14 chr13 19343335 19343406 -82529763 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 573 94 0 0 chr13 19346139 19346224 -82526945 + (CA)n Simple_repeat Simple_repeat 2 86 0 6851 86 3 5 chr13 19347266 19348208 -82524961 + L1PB1 LINE L1 5210 6150 -1 2560 167 57 5 chr13 19348236 19348678 -82524491 + LTR32 LTR ERVL 7 471 0 225 108 0 0 chr13 19349467 19349504 -82523665 + (CA)n Simple_repeat Simple_repeat 2 38 0 2328 157 68 30 chr13 19349594 19350034 -82523135 + LTR32 LTR ERVL 15 471 0 306 139 0 0 chr13 19350861 19350904 -82522265 - MER45A DNA AcHobo 0 178 136 848 67 0 0 chr13 19350927 19351032 -82522137 + AluY SINE Alu 206 310 -1 1704 149 103 0 chr13 19351034 19351315 -82521854 + AluJo SINE Alu 1 310 -2 447 251 56 39 chr13 19351457 19351636 -82521533 + L2 LINE L2 3108 3289 -24 2368 101 0 3 chr13 19351895 19352203 -82520966 + AluSg SINE Alu 1 307 -3 1960 140 70 3 chr13 19352572 19352915 -82520254 - L1MB2 LINE L1 -7 6164 5799 620 182 6 136 chr13 19353116 19353196 -82519973 - MER45A DNA AcHobo -1403 178 132 2648 150 56 23 chr13 19353196 19353353 -82519816 + L1MB2 LINE L1 5670 5820 -351 2261 107 0 0 chr13 19353353 19353642 -82519527 + AluSc SINE Alu 1 289 -20 2648 150 56 23 chr13 19353642 19353963 -82519206 + L1MB2 LINE L1 5820 6164 -7 620 182 6 136 chr13 19353963 19354058 -82519111 - MER45A DNA AcHobo -1449 132 26 2290 91 0 0 chr13 19354861 19355146 -82518023 + AluSq SINE Alu 1 285 -28 1019 240 32 16 chr13 19355169 19355419 -82517750 + MIR SINE MIR 9 262 0 1434 233 78 18 chr13 19355830 19356216 -82516953 - MLT1I LTR MaLR 0 409 1 265 214 270 0 chr13 19356687 19356776 -82516393 - L2 LINE L2 0 3272 3160 1928 170 41 27 chr13 19357353 19357718 -82515451 + MLT1A2 LTR MaLR 1 370 -4 2130 136 3 0 chr13 19357917 19358219 -82514950 - AluSx SINE Alu -9 303 1 264 327 26 96 chr13 19359303 19359688 -82513481 - L2 LINE L2 -33 3239 2882 230 255 0 0 chr13 19362548 19362595 -82510574 - MER81 DNA DNA -36 78 32 1138 155 11 5 chr13 19363328 19363515 -82509654 + MER2 DNA MER2_type 3 190 -155 2234 109 0 10 chr13 19363515 19363819 -82509350 + AluSx SINE Alu 1 301 -11 232 211 56 42 chr13 19363888 19363959 -82509210 + MER2 DNA MER2_type 267 338 -7 2418 136 115 14 chr13 19364121 19364540 -82508629 + LOR1b LTR ERV1 1 461 0 5913 135 96 1 chr13 19364559 19365491 -82507678 + LTR28 LTR ERV1 1 1020 0 290 260 67 10 chr13 19366164 19366268 -82506901 + MIR SINE MIR 86 195 -67 837 253 5 31 chr13 19366532 19366582 -82506587 + MER5A DNA MER1_type 1 51 -138 2862 185 18 73 chr13 19366582 19367199 -82505970 + MER119 DNA MER1_type 1 583 0 837 253 5 31 chr13 19367199 19367342 -82505827 + MER5A DNA MER1_type 51 189 0 211 326 52 42 chr13 19368962 19369155 -82504014 + L2 LINE L2 2569 2763 -551 191 302 0 0 chr13 19369658 19369711 -82503458 - L2 LINE L2 -56 3257 3205 334 331 48 0 chr13 19370111 19370235 -82502934 + MIR SINE MIR 26 155 -107 225 211 39 0 chr13 19370262 19370314 -82502855 - MIR SINE MIR -50 212 159 4882 160 14 104 chr13 19370318 19372538 -82500631 - L1MB2 LINE L1 -1 6170 4166 21 0 0 0 chr13 19372995 19373016 -82500153 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr13 19373021 19373049 -82500120 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 5642 93 18 8 chr13 19373049 19374256 -82498913 + SVA Other Other 52 1386 0 248 350 166 14 chr13 19374952 19375169 -82498000 - L2 LINE L2 -505 2809 2560 658 192 212 25 chr13 19375443 19375641 -82497528 - MER46A DNA MER2_type -1 235 1 * 775 149 0 0 chr13 19375529 19375643 -82497526 + MER46A DNA MER2_type 33 146 -90 343 273 36 72 chr13 19375746 19375885 -82497284 - MIR SINE MIR -73 135 2 1308 249 109 31 chr13 19375941 19376428 -82496741 + MLT1H LTR MaLR 25 549 0 258 190 35 17 chr13 19378037 19378095 -82495074 - L2 LINE L2 0 3313 3255 21 0 0 0 chr13 19378157 19378178 -82494991 + AT_rich Low_complexity Low_complexity 1 21 0 2247 96 0 0 chr13 19378400 19378730 -82494439 + AluSx SINE Alu 1 330 0 354 296 94 13 chr13 19379259 19379418 -82493751 + MER5B DNA MER1_type 7 178 0 539 134 4 15 chr13 19379603 19379855 -82493314 + AluJo SINE Alu 1 312 0 225 298 16 24 chr13 19380091 19380215 -82492954 + CT-rich Low_complexity Low_complexity 1 123 0 428 310 89 24 chr13 19380994 19381207 -82491962 - MIR SINE MIR -23 239 13 198 0 0 0 chr13 19381266 19381288 -82491881 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1704 174 3 3 chr13 19381293 19381575 -82491594 - AluJb SINE Alu -30 282 1 298 306 200 30 chr13 19381989 19382254 -82490915 - L3 LINE CR1 -555 1022 713 373 362 27 43 chr13 19382264 19382452 -82490717 + L2 LINE L2 3087 3271 -1 258 210 123 12 chr13 19382591 19382672 -82490497 + MIR SINE MIR 95 184 -78 395 321 9 0 chr13 19385521 19385630 -82487539 - MER81 DNA DNA -1 113 4 3489 174 73 24 chr13 19385953 19386685 -82486484 + LTR1B LTR ERV1 1 785 0 23 33 0 0 chr13 19388303 19388333 -82484836 + AT_rich Low_complexity Low_complexity 1 30 0 277 335 31 37 chr13 19388526 19388717 -82484452 - L2 LINE L2 -927 2387 2198 185 229 72 60 chr13 19488895 19488978 -82384191 + L2 LINE L2 3227 3310 -3 2061 291 102 16 chr13 19489015 19489815 -82383354 + L2 LINE L2 1928 2796 -518 215 266 46 46 chr13 19489844 19489953 -82383216 + L2 LINE L2 2768 2876 -438 461 243 35 62 chr13 19489969 19490113 -82383056 + L2 LINE L2 3170 3309 -4 444 82 0 0 chr13 19497069 19497130 -82376039 + (TTCTC)n Simple_repeat Simple_repeat 5 65 0 1924 129 7 4 chr13 19497130 19497409 -82375760 - AluSq SINE Alu -32 281 2 667 129 0 170 chr13 19497409 19497580 -82375589 - AluJb SINE Alu -167 145 4 2201 105 11 0 chr13 19498868 19499154 -82374015 + AluSc SINE Alu 2 290 -19 1357 134 99 95 chr13 19499461 19499775 -82373394 + AluJb SINE Alu 1 315 0 2410 92 48 28 chr13 19499947 19500304 -82372865 - THE1B LTR MaLR 0 364 1 567 29 0 0 chr13 19501321 19501390 -82371779 + (TG)n Simple_repeat Simple_repeat 2 70 0 896 223 27 0 chr13 19501936 19502120 -82371049 + MER5A DNA MER1_type 1 189 0 285 29 0 0 chr13 19502172 19502206 -82370963 + (TG)n Simple_repeat Simple_repeat 2 35 0 256 259 121 52 chr13 19502447 19502563 -82370606 - MIR3 SINE MIR -27 181 58 183 328 0 0 chr13 19503229 19503293 -82369876 + L2 LINE L2 3250 3313 0 2250 100 10 0 chr13 19504030 19504329 -82368840 - AluSc SINE Alu -7 302 1 214 250 42 83 chr13 19504778 19504850 -82368319 + L2 LINE L2 3164 3232 -40 21 36 0 0 chr13 19505414 19505442 -82367727 + AT_rich Low_complexity Low_complexity 1 28 0 3050 106 50 10 chr13 19505442 19505943 -82367226 - LTR9B LTR ERV1 -82 562 42 1232 136 0 0 chr13 19505951 19506150 -82367019 - HUERS-P3 LTR ERV1 -3 8916 8718 1249 141 5 0 chr13 19506192 19506391 -82366778 - LTR9B LTR ERV1 0 644 445 437 309 137 44 chr13 19506791 19507199 -82365970 - L2 LINE L2 -401 2913 2468 325 337 31 0 chr13 19507256 19507354 -82365815 - L2 LINE L2 -3 3269 3169 311 358 73 0 chr13 19508046 19508225 -82364944 - L2 LINE L2 -534 2780 2589 337 305 16 75 chr13 19508239 19508321 -82364848 + MIR SINE MIR 87 172 -90 481 250 44 61 chr13 19508321 19508501 -82364668 + MER69A DNA AcHobo 1 177 0 337 305 16 75 chr13 19508501 19508605 -82364564 + MIR SINE MIR 172 262 0 326 340 106 30 chr13 19508611 19508979 -82364190 - L2 LINE L2 -817 2497 2102 605 206 82 38 chr13 19508979 19509254 -82363915 + L1MD3 LINE L1 6080 7984 -11 185 81 0 27 chr13 19509254 19509291 -82363878 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 399 119 0 0 chr13 19509632 19509699 -82363470 + (GA)n Simple_repeat Simple_repeat 2 68 0 351 207 75 126 chr13 19510696 19510746 -82362423 + L1MEd LINE L1 436 487 -5632 2237 96 0 0 chr13 19510746 19511052 -82362117 - AluSx SINE Alu 0 306 1 351 207 75 126 chr13 19511052 19511174 -82361995 + L1MEd LINE L1 487 600 -5519 687 264 38 27 chr13 19511318 19511610 -82361559 + L1MEd LINE L1 895 1189 -4930 234 106 85 0 chr13 19511609 19511656 -82361513 + L1MB5 LINE L1 6108 6158 -16 * 16525 151 51 15 chr13 19511737 19514097 -82359072 + L1M1 LINE L1 602 3180 -4385 1419 62 21 0 chr13 19514097 19514289 -82358880 - L1PA4 LINE L1 0 6155 5960 16525 151 51 15 chr13 19514289 19516066 -82357103 + L1M1 LINE L1 3180 4891 -2674 863 172 0 0 chr13 19516543 19516712 -82356457 + CT-rich Low_complexity Low_complexity 4 172 0 847 92 42 0 chr13 19516760 19516880 -82356289 - AluJo SINE Alu -174 138 14 1740 163 3 11 chr13 19518428 19518748 -82354421 + AluJb SINE Alu 3 320 0 13653 84 13 18 chr13 19519163 19521286 -82351883 + HERVH LTR ERV1 609 2719 -4994 2173 127 0 20 chr13 19521729 19522029 -82351140 + AluSx SINE Alu 3 296 -16 22 56 0 0 chr13 19522167 19522203 -82350966 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 19522858 19522887 -82350282 + AT_rich Low_complexity Low_complexity 1 29 0 2112 173 6 6 chr13 19523463 19523827 -82349342 - MLT1A1 LTR MaLR 0 365 2 1907 155 30 19 chr13 19524034 19524396 -82348773 - THE1C LTR MaLR -9 366 1 1950 126 0 42 chr13 19524509 19524818 -82348351 - AluSx SINE Alu -16 296 1 691 222 49 6 chr13 19524858 19525020 -82348149 + MIR SINE MIR 31 199 -63 770 289 72 0 chr13 19525790 19526025 -82347144 + MIR SINE MIR 11 262 0 23 54 0 0 chr13 19526208 19526245 -82346924 + AT_rich Low_complexity Low_complexity 1 37 0 231 36 0 0 chr13 19526573 19526601 -82346568 + (TG)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr13 19527185 19527214 -82345955 + AT_rich Low_complexity Low_complexity 1 29 0 1018 169 0 28 chr13 19527914 19528092 -82345077 - AluJb SINE Alu -17 295 123 275 372 24 64 chr13 19528367 19528663 -82344506 - L2 LINE L2 -53 3219 2936 187 238 0 0 chr13 19528729 19528771 -82344398 + L2 LINE L2 3272 3313 0 2126 98 0 21 chr13 19529035 19529322 -82343847 - AluSx SINE Alu -31 281 1 283 244 24 0 chr13 19529412 19529494 -82343675 - L1MC4a LINE L1 -1884 5924 5841 2264 136 17 8 chr13 19530793 19531154 -82342015 + MLT1A1 LTR MaLR 2 365 0 472 185 198 51 chr13 19533428 19533585 -82339584 + MER5A DNA MER1_type 10 189 0 1941 157 14 14 chr13 19533654 19534010 -82339159 - Tigger3(Golem) DNA MER2_type -2 3027 2672 284 94 0 94 chr13 19534112 19534165 -82339004 + FLAM_A SINE Alu 71 118 -15 2172 112 10 0 chr13 19534674 19534977 -82338192 - AluSq SINE Alu -6 307 2 2559 161 57 39 chr13 19535470 19536309 -82336860 + MER73 LTR ERVL 1 640 -4 556 275 145 19 chr13 19536564 19536771 -82336398 - MIR SINE MIR -9 253 21 2045 120 28 9 chr13 19536882 19537207 -82335962 - L1PA16 LINE L1 0 6166 5836 686 270 78 15 chr13 19537307 19537511 -82335658 - MIR SINE MIR -43 219 3 26 64 0 0 chr13 19537908 19537955 -82335214 + AT_rich Low_complexity Low_complexity 1 47 0 710 175 9 0 chr13 19539202 19539316 -82333853 + AluJo SINE Alu 6 120 -192 22 0 0 0 chr13 19539316 19539338 -82333831 + AT_rich Low_complexity Low_complexity 1 22 0 1154 188 0 5 chr13 19539347 19539544 -82333625 + AluJo SINE Alu 101 296 -16 2009 146 7 3 chr13 19540368 19540670 -82332499 - AluSx SINE Alu -9 303 1 2269 114 0 3 chr13 19541269 19541575 -82331594 + AluSc SINE Alu 1 305 -4 1769 294 127 41 chr13 19541768 19542136 -82331033 - L2 LINE L2 0 3313 2978 207 0 0 0 chr13 19542136 19542159 -82331010 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1769 294 127 41 chr13 19542159 19542350 -82330819 - L2 LINE L2 -335 2978 2805 2116 133 7 0 chr13 19542350 19542651 -82330518 - AluSx SINE Alu -5 307 5 1769 294 127 41 chr13 19542651 19543363 -82329806 - L2 LINE L2 -508 2805 1941 254 349 89 29 chr13 19543741 19544175 -82328994 - L2 LINE L2 -181 3091 2633 2088 112 4 0 chr13 19544261 19544538 -82328631 + AluSx SINE Alu 2 279 -33 450 0 0 0 chr13 19544538 19544588 -82328581 + (GAAAA)n Simple_repeat Simple_repeat 5 54 0 1205 181 33 13 chr13 19545125 19545429 -82327740 + MER33 DNA MER1_type 9 318 -6 904 275 128 18 chr13 19545503 19546001 -82327168 - HAL1 LINE L1 -98 2409 1857 1931 268 96 55 chr13 19546096 19546299 -82326870 - HAL1 LINE L1 -905 1602 1409 2049 86 0 4 chr13 19546299 19546566 -82326603 - AluY SINE Alu -5 306 41 1931 268 96 55 chr13 19546566 19546593 -82326576 - HAL1 LINE L1 -1098 1409 1385 1898 152 10 16 chr13 19546593 19546902 -82326267 - AluJo SINE Alu -5 307 1 1931 268 96 55 chr13 19546902 19547034 -82326135 - HAL1 LINE L1 -1122 1385 1260 1683 115 35 8 chr13 19547034 19547295 -82325874 - AluSx SINE Alu -5 307 40 1931 268 96 55 chr13 19547295 19547691 -82325478 - HAL1 LINE L1 -1247 1260 882 222 105 0 0 chr13 19547691 19547729 -82325440 + (TG)n Simple_repeat Simple_repeat 1 38 0 1931 268 96 55 chr13 19547729 19548420 -82324749 - HAL1 LINE L1 -1625 882 90 2575 152 53 17 chr13 19548506 19548980 -82324189 - MER44D DNA MER2_type 0 605 243 370 150 0 0 chr13 19548980 19549040 -82324129 - MSTA LTR MaLR 0 428 369 198 252 74 0 chr13 19551392 19551459 -82321710 + MIR SINE MIR 23 95 -113 1573 148 64 33 chr13 19551734 19552064 -82321105 + THE1C LTR MaLR 1 340 -35 2507 55 0 10 chr13 19552276 19552587 -82320582 + AluY SINE Alu 1 308 -3 1687 188 10 3 chr13 19552784 19553076 -82320093 - AluJb SINE Alu -18 294 1 8682 172 35 20 chr13 19553469 19554145 -82319024 - L1 LINE L1 -1788 4358 3693 2293 116 0 3 chr13 19554145 19554456 -82318713 - AluSq SINE Alu -3 310 1 8682 172 35 20 chr13 19554456 19555683 -82317486 - L1 LINE L1 -2453 3693 2427 2298 113 0 0 chr13 19555683 19555984 -82317185 + AluSq SINE Alu 1 301 -12 309 317 57 8 chr13 19557436 19557559 -82315610 + L2 LINE L2 3142 3270 -2 941 196 20 0 chr13 19557585 19557789 -82315380 + LTR55 LTR ERV 1 208 -340 239 300 100 20 chr13 19557944 19558044 -82315125 - MIR SINE MIR -64 144 37 617 231 113 25 chr13 19558325 19558563 -82314606 + MIR SINE MIR 4 262 0 23 33 0 0 chr13 19559414 19559444 -82313725 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 19562672 19562694 -82310475 + GC_rich Low_complexity Low_complexity 1 22 0 1687 147 0 8 chr13 19563464 19563722 -82309447 - AluSx SINE Alu -15 297 42 527 123 0 0 chr13 19563722 19563795 -82309374 - AluS SINE Alu -240 73 1 1057 176 66 25 chr13 19563883 19564201 -82308968 - Charlie2 DNA MER1_type 0 2862 2532 386 192 13 0 chr13 19564211 19564289 -82308880 - L1PB3 LINE L1 -94 6060 5982 408 326 67 19 chr13 19564315 19564585 -82308584 - L1M4 LINE L1 -1718 4428 4146 255 230 0 27 chr13 19564748 19564822 -82308347 + MLT1B LTR MaLR 220 291 -99 529 173 19 10 chr13 19564830 19564934 -82308235 - MLT1A1 LTR MaLR -78 287 183 12168 144 19 9 chr13 19564934 19567843 -82305326 + L1PA11 LINE L1 3262 6172 -2 232 317 92 43 chr13 19568785 19568949 -82304220 + L2 LINE L2 2885 3056 -257 205 366 40 40 chr13 19569166 19569267 -82303902 + L2 LINE L2 3169 3269 -3 234 91 0 0 chr13 19570311 19570344 -82302825 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 2777 190 44 10 chr13 19570585 19571179 -82301990 - MER90 LTR ERV1 0 614 1 1785 224 35 25 chr13 19571457 19571968 -82301201 + MER77 LTR ERV1 1 597 -8 346 250 13 0 chr13 19572213 19572289 -82300880 - L2 LINE L2 0 3272 3196 972 194 6 0 chr13 19572335 19572505 -82300664 - FRAM SINE Alu -6 170 1 2205 156 73 63 chr13 19572699 19573204 -82299965 - Tigger3b DNA MER2_type -720 511 2 919 290 107 30 chr13 19574658 19575089 -82298080 - L2 LINE L2 -1 3312 2849 21 36 0 0 chr13 19576444 19576472 -82296697 + AT_rich Low_complexity Low_complexity 1 28 0 2048 122 80 11 chr13 19577212 19577588 -82295581 + L1MA3 LINE L1 5904 6305 0 976 224 14 0 chr13 19577640 19577854 -82295315 + MER58A DNA MER1_type 1 217 -7 330 272 130 6 chr13 19578261 19578430 -82294739 - L1ME LINE L1 -358 5812 5623 307 320 128 57 chr13 19578661 19579027 -82294142 - L1ME LINE L1 -1116 5030 4639 637 152 0 9 chr13 19579104 19579209 -82293960 + FLAM_C SINE Alu 5 108 -35 1112 207 111 14 chr13 19579218 19579571 -82293598 - L1MEc LINE L1 -5594 802 416 998 126 97 6 chr13 19579579 19579754 -82293415 + PABL_A LTR ERV1 1 191 -469 886 35 0 9 chr13 19579864 19579977 -82293192 + L1PA5 LINE L1 6040 6151 -3 193 294 73 0 chr13 19580446 19580514 -82292655 + L2 LINE L2 2899 2971 -343 754 286 57 21 chr13 19581051 19581334 -82291835 + L2 LINE L2 3020 3312 -1 500 270 189 18 chr13 19581728 19581950 -82291219 + MIR SINE MIR 3 262 0 667 45 67 0 chr13 19583009 19583098 -82290071 + MER51B LTR ERV1 1 95 -282 734 146 238 0 chr13 19583098 19583249 -82289920 + MER51B-int LTR ERV1 3141 3327 -4489 * 2287 136 139 2 chr13 19583231 19583709 -82289460 + MER51B-int LTR ERV1 2829 4529 -2602 1767 87 70 4 chr13 19583697 19584049 -82289120 + MER51B-int LTR ERV1 2221 2640 -2577 * 7623 153 37 16 chr13 19584054 19586078 -82287091 + MER51B-int LTR ERV1 5758 7815 -1 2158 112 92 6 chr13 19586080 19586427 -82286742 + MER51B LTR ERV1 1 377 0 270 81 0 0 chr13 19586903 19586940 -82286229 + (TG)n Simple_repeat Simple_repeat 1 37 0 255 177 0 0 chr13 19586940 19587002 -82286167 + GA-rich Low_complexity Low_complexity 2 63 0 546 289 154 43 chr13 19587169 19587674 -82285495 + L2 LINE L2 2653 3241 -72 403 139 0 0 chr13 19587698 19587770 -82285399 - L1PA11 LINE L1 -1 6173 6102 1427 72 0 0 chr13 19587770 19587963 -82285206 + L1PA10 LINE L1 5732 5924 -244 229 250 0 0 chr13 19588326 19588386 -82284783 + (TG)n Simple_repeat Simple_repeat 2 61 0 232 218 164 73 chr13 19589221 19589331 -82283838 - MER5A DNA MER1_type -24 165 46 180 0 0 0 chr13 19589812 19589832 -82283337 + (ATTTG)n Simple_repeat Simple_repeat 2 21 0 357 174 0 0 chr13 19590099 19590168 -82283001 + (TA)n Simple_repeat Simple_repeat 2 70 0 405 258 48 24 chr13 19593170 19593294 -82279875 + MIR SINE MIR 17 143 -65 186 133 0 0 chr13 19594024 19594054 -82279115 + (GAA)n Simple_repeat Simple_repeat 1 30 0 216 329 56 35 chr13 19594188 19594331 -82278838 - MIR3 SINE MIR -5 203 58 391 326 22 22 chr13 19594466 19594604 -82278565 - MIR SINE MIR -79 183 46 26 0 0 0 chr13 19597585 19597611 -82275558 + AT_rich Low_complexity Low_complexity 1 26 0 2137 103 4 0 chr13 19597888 19598203 -82274966 - AluSx SINE Alu 0 318 3 2130 130 3 0 chr13 19598916 19599209 -82273960 + AluJb SINE Alu 1 294 -18 186 43 0 0 chr13 19599662 19599685 -82273484 + (TG)n Simple_repeat Simple_repeat 2 24 0 921 206 76 79 chr13 19600606 19600975 -82272194 + L1MC4 LINE L1 7645 8012 -30 22 0 0 0 chr13 19602529 19602551 -82270618 + AT_rich Low_complexity Low_complexity 1 22 0 354 255 29 128 chr13 19603019 19603124 -82270045 - MIR SINE MIR -45 163 135 2069 105 11 0 chr13 19603124 19603410 -82269759 - AluSx SINE Alu -19 293 5 354 255 29 128 chr13 19603410 19603530 -82269639 - MIR SINE MIR -73 135 5 980 245 56 43 chr13 19603568 19603943 -82269226 + MLT1I LTR MaLR 5 384 -25 959 150 0 0 chr13 19604399 19604546 -82268623 + AluSg/x SINE Alu 164 310 0 223 292 139 0 chr13 19606236 19606308 -82266861 - MER5C DNA MER1_type -241 83 2 744 103 8 0 chr13 19606565 19606682 -82266487 + AluSc SINE Alu 186 303 -6 3040 91 29 78 chr13 19607282 19607723 -82265446 - Tigger4(Zombi) DNA MER2_type 0 2731 2325 2198 116 3 7 chr13 19607723 19608033 -82265136 + AluSx SINE Alu 1 309 -3 3040 91 29 78 chr13 19608033 19608183 -82264986 - Tigger4(Zombi) DNA MER2_type -406 2325 2169 503 157 12 0 chr13 19608180 19608263 -82264906 - Tigger4(Zombi) DNA MER2_type -2647 84 1 * 560 268 73 97 chr13 19608549 19608734 -82264435 + L1ME4a LINE L1 5636 5824 -297 450 0 0 0 chr13 19608734 19608784 -82264385 + (TA)n Simple_repeat Simple_repeat 1 50 0 1459 69 35 5 chr13 19608786 19608989 -82264180 - L1PA10 LINE L1 -4 6164 5956 560 268 73 97 chr13 19608989 19609296 -82263873 + L1ME4a LINE L1 5825 6119 -2 212 137 0 137 chr13 19610806 19610857 -82262312 - L2 LINE L2 -5 3308 3265 259 366 30 8 chr13 19614120 19614254 -82258915 + MIR3 SINE MIR 62 198 -10 2090 119 0 0 chr13 19615226 19615503 -82257666 - AluSx SINE Alu -35 277 1 1031 204 136 52 chr13 19615923 19616056 -82257113 - MLT1C LTR MaLR -5 462 342 3805 169 20 49 chr13 19616056 19616811 -82256358 - MER44D DNA MER2_type 0 605 1 1031 204 136 52 chr13 19616811 19617103 -82256066 - MLT1C LTR MaLR -125 342 1 2228 117 49 9 chr13 19617423 19617773 -82255396 - THE1B LTR MaLR 0 364 1 474 317 53 44 chr13 19618049 19618224 -82254945 + MIR SINE MIR 28 207 -55 192 77 0 0 chr13 19618224 19618250 -82254919 + (CA)n Simple_repeat Simple_repeat 1 26 0 474 317 53 44 chr13 19618250 19618301 -82254868 + MIR SINE MIR 207 256 -6 287 165 12 106 chr13 19618618 19618703 -82254466 + LTR67 LTR ERVL 477 553 -4 1939 156 3 0 chr13 19620006 19620307 -82252862 - AluJo SINE Alu -10 302 1 380 236 11 11 chr13 19621888 19621977 -82251192 - L2 LINE L2 -1 3312 3224 270 308 44 13 chr13 19622144 19622303 -82250866 + L2 LINE L2 878 1041 -2273 1062 286 152 32 chr13 19622304 19622930 -82250239 + Charlie2a DNA MER1_type 1 701 -2161 2575 164 55 25 chr13 19622933 19623501 -82249668 - L1MC3 LINE L1 0 7785 7201 539 229 72 44 chr13 19623503 19623883 -82249286 + Charlie2a DNA MER1_type 689 1118 -1744 779 37 148 0 chr13 19623884 19623992 -82249177 + L1PA13 LINE L1 6036 6159 -4 3940 203 64 85 chr13 19624066 19624583 -82248586 + Charlie2a DNA MER1_type 1122 1648 -1214 2007 132 0 33 chr13 19624583 19624886 -82248283 + AluSx SINE Alu 1 293 -19 3940 203 64 85 chr13 19624886 19624909 -82248260 + Charlie2a DNA MER1_type 1648 1670 -1192 573 161 0 0 chr13 19624909 19625002 -82248167 + L1MD1 LINE L1 6142 6234 -8 1483 100 76 0 chr13 19625002 19625247 -82247922 + L1MA2 LINE L1 6034 6301 -3 3940 203 64 85 chr13 19625247 19626480 -82246689 + Charlie2a DNA MER1_type 1668 2860 -2 2613 310 94 60 chr13 19626484 19628405 -82244764 + L2 LINE L2 1038 3057 -215 1536 194 25 68 chr13 19628512 19628831 -82244338 - L1MDa LINE L1 -6142 398 98 2066 126 3 0 chr13 19628831 19629117 -82244052 - AluSp SINE Alu -22 291 5 1536 194 25 68 chr13 19629117 19629195 -82243974 - L1MDa LINE L1 -6442 98 18 323 278 142 21 chr13 19629281 19629962 -82243207 - L1MCa LINE L1 -3264 2865 2093 24 32 0 0 chr13 19630214 19630245 -82242924 + AT_rich Low_complexity Low_complexity 1 31 0 2104 184 52 7 chr13 19630391 19630836 -82242333 + MLT1C LTR MaLR 3 467 0 342 45 0 0 chr13 19630929 19630973 -82242196 + (TG)n Simple_repeat Simple_repeat 2 45 0 397 343 41 6 chr13 19630974 19631143 -82242026 - HAL1 LINE L1 -908 1599 1425 416 206 38 8 chr13 19631195 19631326 -82241843 - L1MCa LINE L1 -5081 1038 904 6712 61 10 13 chr13 19631429 19632949 -82240220 + L1PA7 LINE L1 4635 6151 -3 468 119 36 0 chr13 19632953 19633037 -82240132 - L1MB3 LINE L1 -2 6181 6095 520 133 56 0 chr13 19633038 19633128 -82240041 - L1MA6 LINE L1 -366 5934 5840 1695 106 26 0 chr13 19633128 19633392 -82239777 + L1MA6 LINE L1 6030 6300 0 2425 172 34 4 chr13 19633404 19633880 -82239289 - L1MB3 LINE L1 -78 6105 5616 304 261 34 17 chr13 19633893 19634012 -82239157 - L1MCa LINE L1 -5281 838 718 589 279 123 42 chr13 19634016 19634375 -82238794 - L1MCa LINE L1 -5456 663 276 297 0 0 0 chr13 19634454 19634487 -82238682 + (TG)n Simple_repeat Simple_repeat 2 34 0 359 270 237 7 chr13 19634513 19634665 -82238504 + L2 LINE L2 3126 3312 -1 977 201 5 34 chr13 19635494 19635698 -82237471 - MER58A DNA MER1_type 0 224 27 1057 203 53 9 chr13 19635868 19636095 -82237074 - MLT1F1 LTR MaLR -328 239 3 * 4282 192 69 33 chr13 19636095 19637173 -82235996 - Charlie1a DNA MER1_type -338 1117 1 255 103 0 0 chr13 19637361 19637400 -82235769 + (TCC)n Simple_repeat Simple_repeat 2 40 0 468 51 0 0 chr13 19637409 19637468 -82235701 + (TTTTA)n Simple_repeat Simple_repeat 1 59 0 1485 186 3 69 chr13 19637469 19637512 -82235657 - L1MB1 LINE L1 -7 6161 6117 2345 94 0 0 chr13 19637512 19637809 -82235360 - AluY SINE Alu -14 297 1 1485 186 3 69 chr13 19637809 19637844 -82235325 - L1MB1 LINE L1 -51 6117 6081 2232 107 0 3 chr13 19637844 19638142 -82235027 - AluSg SINE Alu -13 297 1 1485 186 3 69 chr13 19638142 19638438 -82234731 - L1MB1 LINE L1 -87 6081 5811 407 168 141 74 chr13 19639317 19639378 -82233791 - MER69 DNA AcHobo 0 2526 2471 3258 122 33 15 chr13 19639378 19639896 -82233273 + MER1A DNA MER1_type 1 527 0 407 168 141 74 chr13 19639896 19639983 -82233186 - MER69 DNA AcHobo -55 2471 2368 22 35 0 0 chr13 19640331 19640360 -82232809 + AT_rich Low_complexity Low_complexity 1 29 0 194 357 133 36 chr13 19641261 19641457 -82231712 - L3b LINE CR1 -34 1549 1335 201 226 19 38 chr13 19641460 19641513 -82231656 - L2 LINE L2 -8 3264 3213 255 246 148 8 chr13 19641878 19642000 -82231169 - L3b LINE CR1 -338 1245 1107 265 185 111 74 chr13 19642031 19642180 -82230989 + MIR3 SINE MIR 41 193 -15 233 216 49 39 chr13 19642508 19642610 -82230559 - HAL1b LINE L1 -34 1314 1212 276 294 184 65 chr13 19642905 19643242 -82229927 + L2 LINE L2 2014 2390 -924 224 292 139 22 chr13 19643836 19643973 -82229196 - MIR SINE MIR -50 212 60 534 318 69 50 chr13 19644069 19644531 -82228638 + L2 LINE L2 2449 2919 -395 314 202 158 53 chr13 19644506 19644620 -82228549 + L2 LINE L2 3179 3304 -9 * 808 234 45 37 chr13 19645277 19645521 -82227648 + MIR SINE MIR 17 262 0 427 246 136 45 chr13 19645538 19645802 -82227367 - MLT1J LTR MaLR 0 511 224 2343 68 3 65 chr13 19646978 19647302 -82225867 + AluSp SINE Alu 1 304 -9 401 200 73 113 chr13 19648132 19648282 -82224887 + LTR33 LTR ERVL 33 176 -345 1773 105 22 99 chr13 19648600 19648949 -82224220 + AluYb8 SINE Alu 1 325 0 2289 130 50 38 chr13 19648995 19649350 -82223819 + MSTA LTR MaLR 1 363 -65 2176 120 10 0 chr13 19649350 19649658 -82223511 - AluSx SINE Alu -1 311 1 2289 130 50 38 chr13 19649658 19649725 -82223444 + MSTA LTR MaLR 363 428 0 7188 163 121 8 chr13 19649727 19651146 -82222023 + MSTA-int LTR MaLR 3 1580 0 2739 109 46 5 chr13 19651146 19651557 -82221612 + MSTA LTR MaLR 1 428 0 309 272 158 6 chr13 19651704 19651862 -82221307 + LTR33 LTR ERVL 340 521 0 190 318 56 37 chr13 19652201 19652308 -82220861 - MIR SINE MIR -70 192 84 1409 165 15 105 chr13 19653465 19653866 -82219303 - MLT1A1 LTR MaLR 0 365 1 384 343 200 15 chr13 19653870 19654666 -82218503 + L2 LINE L2 2128 3091 -181 614 196 60 114 chr13 19654792 19655144 -82218025 - HAL1 LINE L1 -6 2501 2169 347 263 63 86 chr13 19655194 19655369 -82217800 - HAL1 LINE L1 -664 1843 1673 1818 123 98 11 chr13 19655389 19655665 -82217504 + AluJo SINE Alu 1 300 -12 33 56 0 0 chr13 19655679 19655733 -82217436 + AT_rich Low_complexity Low_complexity 1 54 0 404 211 23 23 chr13 19655776 19655947 -82217222 + A-rich Low_complexity Low_complexity 3 173 0 233 288 0 0 chr13 19655955 19656014 -82217155 + GA-rich Low_complexity Low_complexity 3 61 0 2043 84 40 7 chr13 19656133 19656467 -82216702 - AluY SINE Alu 0 343 1 1886 243 151 61 chr13 19656476 19657874 -82215295 - HAL1 LINE L1 -890 1617 94 244 190 114 51 chr13 19658020 19658099 -82215070 + LTR48B LTR ERV1 1 84 -560 1289 169 14 1 chr13 19658143 19658395 -82214774 + MER39 LTR ERV1 385 487 -55 425 123 0 0 chr13 19658488 19658553 -82214616 + MER34C LTR ERV1 37 101 -484 348 202 43 72 chr13 19658707 19658986 -82214183 + MER34 LTR ERV1 390 527 -15 708 177 8 0 chr13 19658986 19659110 -82214059 - MER5B DNA MER1_type -50 128 4 270 257 66 93 chr13 19659967 19660123 -82213046 + MIR SINE MIR 37 189 -28 1048 153 16 26 chr13 19660211 19660400 -82212769 - MER5A DNA MER1_type -2 187 1 4079 87 7 0 chr13 19660813 19661363 -82211806 - MER41A LTR ERV1 0 554 1 243 401 38 38 chr13 19661452 19661584 -82211585 - L2 LINE L2 -20 3252 3121 617 231 81 6 chr13 19661797 19661957 -82211212 - MIR SINE MIR -6 256 85 2027 102 11 4 chr13 19662220 19662495 -82210674 + AluSc SINE Alu 1 277 -32 216 0 0 0 chr13 19662497 19662521 -82210648 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 654 176 183 20 chr13 19662881 19663034 -82210135 + MER5B DNA MER1_type 1 178 0 2211 121 21 9 chr13 19663671 19664010 -82209159 - MER61A LTR ERV1 0 343 1 718 246 58 45 chr13 19664177 19664203 -82208966 + MIR SINE MIR 9 33 -229 2339 92 0 0 chr13 19664203 19664498 -82208671 + AluSq SINE Alu 1 295 -18 718 246 58 45 chr13 19664498 19664695 -82208474 + MIR SINE MIR 33 235 -27 214 337 20 20 chr13 19665028 19665126 -82208043 + MER5B DNA MER1_type 1 98 -80 23 0 0 0 chr13 19666265 19666288 -82206881 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr13 19666326 19666361 -82206808 + AT_rich Low_complexity Low_complexity 1 35 0 474 146 85 12 chr13 19666373 19666455 -82206714 - AluJ/FLAM SINE Alu -222 90 3 1664 184 20 50 chr13 19666701 19667103 -82206066 + L1ME1 LINE L1 5444 5833 -333 239 140 20 0 chr13 19667901 19667951 -82205218 + GA-rich Low_complexity Low_complexity 2 52 0 2018 156 125 13 chr13 19667956 19668341 -82204828 - MSTA LTR MaLR 0 428 1 408 107 40 0 chr13 19668401 19668476 -82204693 + LTR54B LTR ERV1 400 477 -21 2006 96 4 8 chr13 19668479 19668740 -82204429 - AluY SINE Alu -51 260 1 862 141 96 15 chr13 19669004 19669203 -82203966 + L1MC3 LINE L1 7571 7785 0 2206 115 48 28 chr13 19669954 19670311 -82202858 - THE1B LTR MaLR 0 364 1 234 244 9 96 chr13 19670359 19670415 -82202754 - MER103 DNA DNA -59 107 64 2097 116 0 30 chr13 19670415 19670718 -82202451 - AluSx SINE Alu -18 294 1 234 244 9 96 chr13 19670718 19670776 -82202393 - MER103 DNA DNA -102 64 3 421 211 78 47 chr13 19670939 19671067 -82202102 + MIR SINE MIR 33 164 -98 8981 107 13 1 chr13 19671152 19672423 -82200746 + HSMAR1 DNA Mariner 1 1287 0 431 302 32 58 chr13 19674220 19674409 -82198760 - MIR SINE MIR -8 254 71 186 147 0 29 chr13 19674503 19674537 -82198632 - MER5C DNA MER1_type -259 65 33 319 265 209 36 chr13 19675632 19675828 -82197341 + MIR SINE MIR 20 249 -13 3619 169 63 9 chr13 19676582 19677267 -82195902 + MER72 LTR ERV1 1 722 0 199 282 113 14 chr13 19677629 19677700 -82195469 - L2 LINE L2 -1 3312 3235 702 223 37 32 chr13 19677939 19678127 -82195042 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr13 19678153 19678174 -82194995 + AT_rich Low_complexity Low_complexity 1 21 0 258 244 51 0 chr13 19678608 19678686 -82194483 + L1MC4 LINE L1 6622 6703 -1339 497 55 14 0 chr13 19678705 19678778 -82194391 + (TA)n Simple_repeat Simple_repeat 1 74 0 242 209 0 0 chr13 19678778 19678821 -82194348 + MER5A DNA MER1_type 137 179 -10 620 293 50 50 chr13 19679092 19679375 -82193794 + MLT1I LTR MaLR 109 391 -18 905 287 47 40 chr13 19680221 19680746 -82192423 - L1ME3A LINE L1 -342 5828 5294 1895 152 24 0 chr13 19680746 19681035 -82192134 + AluSx SINE Alu 1 296 -16 905 287 47 40 chr13 19681035 19681338 -82191831 - L1ME3A LINE L1 -876 5294 4995 754 253 6 0 chr13 19681678 19681848 -82191321 + MLT1D LTR MaLR 1 171 -334 652 120 0 0 chr13 19683432 19683532 -82189637 + L1 LINE L1 3887 3986 -2160 4129 157 84 12 chr13 19684018 19684499 -82188670 - L1MA8 LINE L1 -99 6192 5747 2048 139 32 32 chr13 19684499 19684872 -82188297 + THE1C LTR MaLR 1 373 -2 4129 157 84 12 chr13 19684872 19685828 -82187341 - L1MA8 LINE L1 -544 5747 4643 2240 166 27 64 chr13 19687346 19687480 -82185689 + MER74A LTR ERVL 5 142 -416 1737 170 7 3 chr13 19687480 19687774 -82185395 - AluJo SINE Alu -7 305 11 2240 166 27 64 chr13 19687774 19688187 -82184982 + MER74A LTR ERVL 142 532 -26 23 68 0 0 chr13 19688828 19688872 -82184297 + AT_rich Low_complexity Low_complexity 1 44 0 4113 156 19 56 chr13 19689222 19689442 -82183727 - MER54B LTR ERVL 0 793 567 2045 144 36 30 chr13 19689442 19689804 -82183365 + THE1B LTR MaLR 1 364 0 4113 156 19 56 chr13 19689804 19690406 -82182763 - MER54B LTR ERVL -226 567 1 22 0 0 0 chr13 19690758 19690780 -82182389 + AT_rich Low_complexity Low_complexity 1 22 0 677 168 27 27 chr13 19690881 19691030 -82182139 - L1ME LINE L1 -356 5810 5662 2498 230 63 69 chr13 19691076 19691268 -82181901 + L1MDa LINE L1 2294 2486 -4054 1585 204 14 17 chr13 19691268 19691562 -82181607 + AluJo SINE Alu 1 293 -19 2498 230 63 69 chr13 19691562 19692478 -82180691 + L1MDa LINE L1 2486 3398 -3142 1691 174 6 32 chr13 19692478 19692794 -82180375 - AluJo SINE Alu -4 308 1 2498 230 63 69 chr13 19692794 19693137 -82180032 + L1MDa LINE L1 3398 3742 -2798 2206 63 0 4 chr13 19693504 19693772 -82179397 + AluY SINE Alu 29 295 -16 21 0 0 0 chr13 19694177 19694198 -82178971 + AT_rich Low_complexity Low_complexity 1 21 0 34 72 0 0 chr13 19694483 19694552 -82178617 + AT_rich Low_complexity Low_complexity 1 69 0 307 329 88 52 chr13 19695050 19695320 -82177849 + L1MEd LINE L1 1081 1340 -1561 2218 120 7 0 chr13 19695320 19695620 -82177549 - AluSx SINE Alu -10 302 1 307 329 88 52 chr13 19695620 19695935 -82177234 + L1MEd LINE L1 1340 1775 -1126 * 331 302 107 12 chr13 19695906 19696075 -82177094 + L1MEd LINE L1 2437 2621 -3919 654 197 15 0 chr13 19696089 19696226 -82176943 - MSTD LTR MaLR 0 396 258 631 188 36 43 chr13 19696269 19696407 -82176762 - MSTC LTR MaLR -258 138 2 420 294 112 13 chr13 19696423 19696957 -82176212 + L1MEd LINE L1 2664 3250 -3290 314 275 68 36 chr13 19697021 19697494 -82175675 + L1MEd LINE L1 3367 3854 -2686 319 205 13 0 chr13 19697705 19697783 -82175386 - MER116 DNA Mariner 0 80 2 351 286 76 65 chr13 19697785 19698192 -82174977 + L1M4 LINE L1 4468 4882 -1264 1651 160 22 60 chr13 19698192 19698510 -82174659 + AluJo SINE Alu 5 310 -2 351 286 76 65 chr13 19698510 19698577 -82174592 + L1M4 LINE L1 4882 4947 -1199 207 0 0 0 chr13 19698670 19698693 -82174476 + (TG)n Simple_repeat Simple_repeat 1 23 0 266 309 52 7 chr13 19698830 19698966 -82174203 + HAL1 LINE L1 13 154 -2353 2423 277 117 28 chr13 19698976 19700387 -82172782 + HAL1 LINE L1 273 1809 -698 2390 118 3 3 chr13 19700589 19700946 -82172223 + THE1B LTR MaLR 7 363 -1 1835 251 131 9 chr13 19700955 19701604 -82171565 - L2 LINE L2 -1106 2208 1481 315 0 0 0 chr13 19703368 19703403 -82169766 + (CA)n Simple_repeat Simple_repeat 2 36 0 1771 248 68 20 chr13 19703710 19704456 -82168713 + HAL1b LINE L1 69 850 -498 186 395 80 5 chr13 19704878 19705078 -82168091 + L3 LINE CR1 64 278 -1299 516 280 74 4 chr13 19705119 19705290 -82167879 - MIR SINE MIR -56 206 28 1802 191 17 56 chr13 19705309 19705770 -82167399 - LTR47B LTR ERVL 0 443 1 252 317 83 28 chr13 19705804 19705949 -82167220 + L3 LINE CR1 345 497 -1080 248 246 0 0 chr13 19706059 19706124 -82167045 + T-rich Low_complexity Low_complexity 1 65 0 2115 122 6 3 chr13 19706126 19706437 -82166732 - AluJo SINE Alu 0 312 1 2112 279 126 13 chr13 19706497 19707214 -82165955 + L3 LINE CR1 581 1378 -199 2085 146 0 0 chr13 19707953 19708248 -82164921 + AluSx SINE Alu 1 295 -17 2937 233 59 11 chr13 19709460 19710259 -82162910 - L1ME3 LINE L1 -6 6156 5320 2771 211 44 32 chr13 19710281 19711009 -82162160 - L1ME1 LINE L1 -10 6156 5420 2278 69 23 13 chr13 19711026 19711329 -82161840 + AluY SINE Alu 1 306 -5 1315 221 24 68 chr13 19712256 19712682 -82160487 + MLT2D LTR ERVL 8 414 0 225 331 78 19 chr13 19713986 19714140 -82159029 - MIR SINE MIR -51 211 49 658 296 36 32 chr13 19714828 19715078 -82158091 - MIR SINE MIR 0 262 12 184 291 39 78 chr13 19716169 19716272 -82156897 - L2 LINE L2 -1 3271 3173 4957 198 38 33 chr13 19717030 19719155 -82154014 - L1MB5 LINE L1 -6 6168 4025 1996 109 65 14 chr13 19719155 19719448 -82153721 - AluSx SINE Alu -4 308 1 4957 198 38 33 chr13 19719448 19719643 -82153526 - L1MB5 LINE L1 -2149 4025 3832 357 215 234 6 chr13 19719678 19719836 -82153333 - MIR SINE MIR -62 200 7 379 307 18 9 chr13 19719860 19719974 -82153195 - L2 LINE L2 -2 3311 3197 2572 234 19 33 chr13 19719992 19720744 -82152425 - L1ME1 LINE L1 -165 6070 5344 2090 117 3 25 chr13 19720744 19721060 -82152109 + AluSx SINE Alu 1 309 -3 2572 234 19 33 chr13 19721060 19721444 -82151725 - L1ME1 LINE L1 -891 5344 4956 2234 147 38 20 chr13 19721444 19721691 -82151478 + L1M2 LINE L1 4895 5136 -1155 2208 91 11 0 chr13 19721691 19722002 -82151167 + AluSp SINE Alu 1 314 0 2234 147 38 20 chr13 19722002 19722435 -82150734 + L1M2 LINE L1 5136 5593 -698 * 3950 244 65 47 chr13 19722434 19724170 -82148999 - L1ME1 LINE L1 -1808 4407 2642 263 242 93 46 chr13 19724157 19724223 -82148946 - L1ME1 LINE L1 -5265 1131 1070 * 2153 116 3 7 chr13 19724223 19724517 -82148652 - AluSx SINE Alu -19 293 1 263 242 93 46 chr13 19724517 19724644 -82148525 - L1ME1 LINE L1 -5326 1070 929 324 329 12 33 chr13 19724779 19724961 -82148208 - L2 LINE L2 -333 2980 2799 483 310 60 25 chr13 19724969 19725253 -82147916 - MLT1I LTR MaLR -8 401 108 757 176 23 0 chr13 19725452 19725583 -82147586 + AluJ SINE Alu 11 144 -168 2180 121 0 13 chr13 19725584 19725899 -82147270 + AluY SINE Alu 1 311 0 199 376 69 0 chr13 19726161 19726262 -82146907 + L3 LINE CR1 1398 1505 -72 1078 273 125 30 chr13 19726278 19726813 -82146356 + Charlie2 DNA MER1_type 45 630 -2152 402 214 31 0 chr13 19726813 19726911 -82146258 + L1PA10 LINE L1 5963 6063 -105 216 333 93 19 chr13 19727311 19727419 -82145750 + L2 LINE L2 3121 3236 -36 286 310 8 70 chr13 19728664 19728793 -82144376 + MIR3 SINE MIR 82 202 -6 1042 172 0 0 chr13 19728794 19728957 -82144212 + AluJ SINE Alu 135 297 -15 299 241 0 37 chr13 19728973 19729081 -82144088 + L1ME1 LINE L1 5175 5278 -868 3159 213 37 22 chr13 19729167 19730000 -82143169 + L1ME1 LINE L1 5297 6142 -24 753 203 0 0 chr13 19730019 19730152 -82143017 - FLAM_C SINE Alu 0 133 1 1716 140 7 57 chr13 19730154 19730454 -82142715 - AluJb SINE Alu -19 293 9 1220 137 64 4 chr13 19730474 19730723 -82142446 - L1MA4 LINE L1 -6 6294 6031 254 283 35 26 chr13 19732279 19732392 -82140777 - MIR SINE MIR -1 261 148 5049 121 5 16 chr13 19732393 19732578 -82140591 + L1PA16 LINE L1 5334 5519 -647 1617 208 14 14 chr13 19732578 19732872 -82140297 + AluJb SINE Alu 1 294 -18 5049 121 5 16 chr13 19732872 19733522 -82139647 + L1PA16 LINE L1 5519 6160 -6 205 244 0 0 chr13 19733664 19733705 -82139464 + GA-rich Low_complexity Low_complexity 3 43 0 967 254 14 161 chr13 19734736 19735389 -82137780 + L2 LINE L2 967 1523 -1791 209 383 25 0 chr13 19735412 19735493 -82137676 - L2 LINE L2 -74 3198 3116 423 311 47 14 chr13 19736007 19736155 -82137014 + MIR3 SINE MIR 47 199 -9 252 0 0 0 chr13 19736770 19736798 -82136371 + (T)n Simple_repeat Simple_repeat 1 28 0 552 265 158 43 chr13 19736991 19737225 -82135944 - MIR SINE MIR -1 261 1 437 230 56 32 chr13 19737285 19737411 -82135758 + L2 LINE L2 3184 3312 -1 488 278 48 32 chr13 19738407 19738594 -82134575 - MIR SINE MIR 0 262 73 618 296 48 5 chr13 19741068 19741274 -82131895 + MIR SINE MIR 47 261 -1 271 108 0 0 chr13 19743189 19743251 -82129918 - Alu SINE Alu 0 307 246 425 351 49 0 chr13 19744974 19745159 -82128010 - MIR SINE MIR -68 194 1 542 308 32 11 chr13 19745821 19746006 -82127163 + MER5A DNA MER1_type 1 189 0 27 29 0 0 chr13 19746038 19746072 -82127097 + AT_rich Low_complexity Low_complexity 1 34 0 1511 243 14 22 chr13 19746188 19746682 -82126487 + L1M4 LINE L1 4488 4977 -1169 524 322 40 10 chr13 19746682 19746881 -82126288 + L2 LINE L2 3107 3311 -2 1257 228 138 50 chr13 19746900 19747624 -82125545 - HAL1b LINE L1 -50 1298 511 2757 267 49 43 chr13 19747666 19747851 -82125318 + L1MEc LINE L1 81 263 -6133 1901 125 52 35 chr13 19747851 19748220 -82124949 - THE1C LTR MaLR 0 375 1 2757 267 49 43 chr13 19748220 19749395 -82123774 + L1MEc LINE L1 263 1449 -4947 486 291 81 44 chr13 19749405 19749835 -82123334 - HAL1b LINE L1 -833 515 70 3996 146 20 14 chr13 19752501 19753234 -82119935 + L1MA8 LINE L1 5543 6280 -11 263 273 16 91 chr13 19753473 19753594 -82119575 - MIR SINE MIR -23 239 128 2219 195 57 13 chr13 19753769 19754297 -82118872 + MER89 LTR ERV1 4 554 -5 688 271 41 14 chr13 19755643 19755864 -82117305 - MIR SINE MIR -18 244 18 464 343 39 23 chr13 19755883 19756192 -82116977 + L2 LINE L2 2590 2903 -411 606 316 53 23 chr13 19756701 19757002 -82116167 - LTR16A LTR ERVL -119 331 22 1178 122 33 0 chr13 19757024 19757204 -82115965 + MER5A DNA MER1_type 1 186 -3 402 275 56 28 chr13 19758053 19758195 -82114974 + MER5A DNA MER1_type 21 166 -23 281 292 34 0 chr13 19758239 19758328 -82114841 - MER5A DNA MER1_type -84 105 14 185 405 38 0 chr13 19758438 19758569 -82114600 + L2 LINE L2 2766 2901 -413 207 204 0 0 chr13 19758581 19758625 -82114544 + (CA)n Simple_repeat Simple_repeat 2 45 0 683 230 19 0 chr13 19758810 19758971 -82114198 - L1PB4 LINE L1 0 6156 5993 1806 182 8 32 chr13 19759859 19760233 -82112936 + MLT1A1 LTR MaLR 1 365 0 545 266 76 19 chr13 19760874 19761032 -82112137 - MER5B DNA MER1_type -9 169 3 584 265 131 64 chr13 19761192 19761679 -82111490 + LTR67 LTR ERVL 29 548 -9 457 276 21 7 chr13 19762446 19762591 -82110578 + MLT1F1 LTR MaLR 313 459 -108 278 333 59 20 chr13 19762930 19763032 -82110137 + L2 LINE L2 3153 3258 -14 347 212 24 12 chr13 19763624 19763709 -82109460 + L1ME1 LINE L1 4884 4969 -1177 1969 249 72 11 chr13 19763710 19764236 -82108933 + MLT1F1 LTR MaLR 2 559 -8 2506 225 62 28 chr13 19764238 19765304 -82107865 + L1ME1 LINE L1 4963 6064 -102 1556 218 88 6 chr13 19765304 19765666 -82107503 + MSTD LTR MaLR 5 396 0 2506 225 62 28 chr13 19765666 19765768 -82107401 + L1ME1 LINE L1 6064 6161 -5 260 79 0 0 chr13 19766522 19766560 -82106609 - AluY SINE Alu -219 82 45 228 108 15 62 chr13 19766588 19766653 -82106516 + (TTTC)n Simple_repeat Simple_repeat 4 65 0 694 258 18 53 chr13 19766698 19766923 -82106246 + MIR SINE MIR 17 233 -29 335 319 120 24 chr13 19767034 19767250 -82105919 - MIR SINE MIR -13 195 11 342 45 0 0 chr13 19767384 19767428 -82105741 + (CA)n Simple_repeat Simple_repeat 2 45 0 348 278 119 11 chr13 19768161 19768352 -82104817 - MIR3 SINE MIR -21 241 26 279 0 42 42 chr13 19768399 19768447 -82104722 + (CAAAAA)n Simple_repeat Simple_repeat 6 53 0 192 77 0 0 chr13 19768546 19768572 -82104597 + (CA)n Simple_repeat Simple_repeat 2 27 0 1961 171 14 22 chr13 19769085 19769453 -82103716 + MLT1A1 LTR MaLR 1 365 0 252 300 25 0 chr13 19769740 19769820 -82103349 - L2 LINE L2 0 3272 3191 758 137 25 50 chr13 19769820 19769981 -82103188 - Tigger7 DNA MER2_type 0 2491 2335 2700 176 26 20 chr13 19770072 19770617 -82102552 - Tigger7 DNA MER2_type -1911 576 29 405 251 18 114 chr13 19770693 19770860 -82102309 - L2 LINE L2 -181 3091 2941 313 288 0 0 chr13 19770984 19771057 -82102112 - L2 LINE L2 0 3272 3200 380 254 71 24 chr13 19772506 19772632 -82100537 + FLAM_C SINE Alu 1 132 -1 198 243 117 36 chr13 19773554 19773665 -82099504 - MIR SINE MIR -56 206 87 250 314 33 33 chr13 19773665 19773786 -82099383 + L1ME LINE L1 5619 5739 -382 2086 125 0 0 chr13 19775342 19775631 -82097538 + AluSx SINE Alu 1 289 -23 231 255 43 96 chr13 19776048 19776142 -82097027 + MIR SINE MIR 59 147 -115 460 343 29 29 chr13 19776602 19776882 -82096287 - L2 LINE L2 -163 3150 2871 21 0 0 0 chr13 19777304 19777325 -82095844 + AT_rich Low_complexity Low_complexity 1 21 0 349 174 163 0 chr13 19777384 19777476 -82095693 - L2 LINE L2 -10 3303 3197 1197 253 83 41 chr13 19778215 19778626 -82094543 + L2 LINE L2 2886 3313 0 1780 120 0 4 chr13 19779011 19779291 -82093878 - AluSx SINE Alu 0 314 36 329 198 86 0 chr13 19779740 19779821 -82093348 - MER3 DNA MER1_type 0 209 122 4385 254 44 59 chr13 19779822 19781730 -82091439 + L1MEc LINE L1 35 1913 -4483 2505 237 41 26 chr13 19781750 19782942 -82090227 + L1MEc LINE L1 1878 3047 -3168 777 283 131 52 chr13 19783108 19783627 -82089542 + MER21B LTR ERV1 155 714 -149 2241 236 48 36 chr13 19783656 19783833 -82089336 + L1MEc LINE L1 3051 3224 -2991 2211 127 3 3 chr13 19783833 19784141 -82089028 + AluSx SINE Alu 1 308 -4 2241 236 48 36 chr13 19784141 19785150 -82088019 + L1MEc LINE L1 3224 4290 -1925 240 257 9 46 chr13 19785180 19785212 -82087957 + L1MEc LINE L1 4361 4393 -1822 1859 142 42 0 chr13 19785212 19785500 -82087669 + AluJo SINE Alu 1 300 -12 240 257 9 46 chr13 19785500 19785576 -82087593 + L1MEc LINE L1 4393 4465 -1750 455 201 117 7 chr13 19785886 19786040 -82087129 + LTR50 LTR ERVL 23 193 -602 2227 108 10 0 chr13 19786066 19786363 -82086806 - AluSp SINE Alu -13 300 1 911 195 83 10 chr13 19786383 19786584 -82086585 - MIR SINE MIR -5 257 41 258 244 23 58 chr13 19787954 19788040 -82085129 - L2 LINE L2 -44 3228 3146 244 319 22 11 chr13 19788203 19788294 -82084875 + MIR SINE MIR 13 104 -158 378 184 0 0 chr13 19788604 19788680 -82084489 + (CA)n Simple_repeat Simple_repeat 2 77 0 196 402 0 0 chr13 19789166 19789248 -82083921 + L2 LINE L2 2589 2670 -644 301 338 96 15 chr13 19789657 19789793 -82083376 + L2 LINE L2 3126 3272 0 251 272 88 44 chr13 19790499 19790613 -82082556 - MIR3 SINE MIR -19 189 71 312 248 38 30 chr13 19791752 19791885 -82081284 + MER113 DNA MER1_type? 3 136 -385 359 226 71 0 chr13 19792141 19792225 -82080944 + L1MC4 LINE L1 6614 6703 -1339 225 0 0 0 chr13 19792225 19792250 -82080919 + (TA)n Simple_repeat Simple_repeat 2 26 0 372 276 24 24 chr13 19792645 19792779 -82080390 + MLT1I LTR MaLR 58 223 -232 544 228 86 73 chr13 19793547 19793780 -82079389 - L1MC4 LINE L1 -306 7736 7501 25596 28 0 1 chr13 19794276 19798122 -82075047 + L1PA3 LINE L1 2326 6170 0 3148 194 51 28 chr13 19798164 19798606 -82074563 + L1MA4 LINE L1 2011 2441 -4407 2284 152 5 13 chr13 19798606 19798982 -82074187 - THE1C LTR MaLR -2 373 1 3148 194 51 28 chr13 19798982 19799493 -82073676 + L1MA4 LINE L1 2441 2986 -3862 1065 178 0 0 chr13 19799495 19799669 -82073500 + FRAM SINE Alu 1 173 -3 8661 192 25 10 chr13 19799669 19801740 -82071429 + L1MA4 LINE L1 2978 5079 -1769 2463 176 46 11 chr13 19801768 19802359 -82070810 + L1MA4 LINE L1 6309 6971 -31 1983 124 0 0 chr13 19802359 19802634 -82070535 - AluSx SINE Alu -3 309 35 2463 176 46 11 chr13 19802634 19802660 -82070509 + L1MA4 LINE L1 6971 6995 -7 189 274 174 44 chr13 19802901 19803171 -82069998 - L2 LINE L2 -654 2660 2356 644 36 12 0 chr13 19803184 19803267 -82069902 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 5767 202 27 30 chr13 19803267 19805662 -82067507 - L1M1 LINE L1 -3946 2382 6 233 276 110 68 chr13 19807286 19807449 -82065720 + L2 LINE L2 2858 3027 -245 1955 250 36 18 chr13 19807460 19807568 -82065601 + L1MA4 LINE L1 17 122 -7443 2342 92 3 13 chr13 19807568 19807883 -82065286 + AluSx SINE Alu 1 312 0 1955 250 36 18 chr13 19807883 19808326 -82064843 + L1MA4 LINE L1 122 578 -6987 1171 248 16 9 chr13 19808472 19808787 -82064382 - L1M1 LINE L1 -5467 2098 1782 3757 210 29 20 chr13 19808804 19809868 -82063301 + L1MA4 LINE L1 3796 4869 -2696 39707 62 5 1 chr13 19809868 19815993 -82057176 + L1PA5 LINE L1 1 6150 -4 8576 166 21 25 chr13 19816009 19818660 -82054509 + L1MA4 LINE L1 4856 7489 -230 207 140 18 211 chr13 19819180 19819294 -82053875 + MER91C DNA MER1_type 17 108 -32 588 262 85 0 chr13 19819613 19819777 -82053392 - MIR SINE MIR -6 256 79 7624 190 30 41 chr13 19819850 19821411 -82051758 + L1M2 LINE L1 3313 4835 -2730 2367 93 0 10 chr13 19821411 19821721 -82051448 + AluSx SINE Alu 1 307 -5 7624 190 30 41 chr13 19821721 19822347 -82050822 + L1M2 LINE L1 4835 5467 -2098 3127 153 19 5 chr13 19822357 19823178 -82049991 + L1M2 LINE L1 6378 7205 -505 251 304 0 0 chr13 19823179 19823235 -82049934 - Tigger3(Golem) DNA MER2_type -1 3028 2973 2185 127 0 0 chr13 19823235 19823535 -82049634 - AluSx SINE Alu -12 300 1 2358 61 0 10 chr13 19823538 19823835 -82049334 - AluY SINE Alu -17 294 1 351 135 144 58 chr13 19823857 19823961 -82049208 - Tigger3(Golem) DNA MER2_type -155 2874 2762 216 316 173 12 chr13 19823961 19824066 -82049103 - L2 LINE L2 -786 2528 2441 252 0 0 0 chr13 19824066 19824094 -82049075 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 216 316 173 12 chr13 19824094 19824156 -82049013 - L2 LINE L2 -873 2441 2334 509 283 60 5 chr13 19824255 19824439 -82048730 + MIR SINE MIR 65 258 -4 181 226 19 19 chr13 19824552 19824605 -82048564 + L3 LINE CR1 1291 1343 -234 1767 191 37 29 chr13 19824667 19824776 -82048393 - MER63C DNA MER1_type -132 928 821 2345 90 3 3 chr13 19824776 19825087 -82048082 + AluSx SINE Alu 1 311 -1 1767 191 37 29 chr13 19825087 19825385 -82047784 - MER63C DNA MER1_type -239 821 518 1602 180 30 33 chr13 19825393 19825726 -82047443 + MER58B DNA MER1_type 9 340 -1 1147 188 58 14 chr13 19825726 19826176 -82046993 - MER63C DNA MER1_type -403 527 22 1945 113 45 3 chr13 19826176 19826468 -82046701 - AluSx SINE Alu -8 304 1 249 288 0 0 chr13 19828359 19828432 -82044737 + (TA)n Simple_repeat Simple_repeat 1 73 0 180 314 0 0 chr13 19828954 19829005 -82044164 - L2 LINE L2 -215 3057 3007 312 264 35 11 chr13 19829019 19829106 -82044063 + MIR SINE MIR 9 97 -165 338 258 129 45 chr13 19829117 19829272 -82043897 - MIR SINE MIR -6 256 89 616 245 170 0 chr13 19830463 19830622 -82042547 - MER5A DNA MER1_type 0 189 4 2087 141 3 3 chr13 19831175 19831481 -82041688 - AluJb SINE Alu -6 306 1 600 128 0 21 chr13 19831606 19831700 -82041469 + AluJ/FLAM SINE Alu 1 92 -220 465 138 0 0 chr13 19831727 19831807 -82041362 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 1029 105 11 22 chr13 19831807 19831988 -82041181 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2674 218 37 48 chr13 19832088 19832150 -82041019 + L1ME1 LINE L1 4716 4777 -1389 2182 96 0 0 chr13 19832150 19832459 -82040710 + AluSx SINE Alu 10 318 0 2674 218 37 48 chr13 19832459 19833566 -82039603 + L1ME1 LINE L1 4777 5873 -293 2211 85 3 0 chr13 19833566 19833876 -82039293 + AluSp SINE Alu 1 311 0 2674 218 37 48 chr13 19833876 19834145 -82039024 + L1ME1 LINE L1 5873 6143 -23 549 239 13 19 chr13 19834146 19834301 -82038868 - MER3 DNA MER1_type -55 154 1 305 322 121 19 chr13 19835650 19836001 -82037168 + L2 LINE L2 2649 3068 -204 594 133 29 0 chr13 19836963 19837068 -82036101 - L1MA6 LINE L1 -224 6076 5969 * 642 196 184 0 chr13 19837063 19837231 -82035938 + L1MA6 LINE L1 6093 6291 -9 483 270 73 40 chr13 19837702 19837899 -82035270 - MIR SINE MIR -6 256 53 256 288 36 78 chr13 19837979 19838195 -82034974 - L2 LINE L2 -964 2350 2096 1558 195 10 13 chr13 19838195 19838502 -82034667 + AluJo SINE Alu 1 306 -6 256 288 36 78 chr13 19838502 19838535 -82034634 - L2 LINE L2 -1218 2096 2063 271 318 45 27 chr13 19841773 19841883 -82031286 + L2 LINE L2 2985 3096 -176 212 159 0 45 chr13 19842058 19842102 -82031067 + L2 LINE L2 3218 3259 -13 258 280 72 106 chr13 19842297 19842533 -82030636 + L2 LINE L2 2522 2749 -565 309 172 0 0 chr13 19842553 19842617 -82030552 + (CA)n Simple_repeat Simple_repeat 1 64 0 191 363 37 65 chr13 19842693 19842908 -82030261 + L2 LINE L2 2853 3061 -252 504 250 9 102 chr13 19843057 19843273 -82029896 + L2 LINE L2 3027 3222 -91 1293 226 35 67 chr13 19843656 19843756 -82029413 + MSTD LTR MaLR 1 103 -293 2300 89 3 0 chr13 19843756 19844049 -82029120 + AluSg SINE Alu 1 294 -16 1293 226 35 67 chr13 19844049 19844350 -82028819 + MSTD LTR MaLR 103 389 -7 379 292 0 0 chr13 19844370 19844459 -82028710 + L2 LINE L2 3214 3302 -11 448 340 159 11 chr13 19844596 19844966 -82028203 + L2 LINE L2 2457 2881 -433 543 411 33 10 chr13 19845105 19845409 -82027760 + L2 LINE L2 2931 3241 -31 2180 104 3 7 chr13 19845904 19846202 -82026967 + AluSx SINE Alu 1 297 -15 873 325 105 24 chr13 19848712 19848788 -82024381 - L2 LINE L2 -6 3266 3198 2219 132 0 0 chr13 19848788 19849099 -82024070 + AluJb SINE Alu 1 311 -1 873 325 105 24 chr13 19849099 19849770 -82023399 - L2 LINE L2 -74 3198 2450 2276 102 0 13 chr13 19850363 19850677 -82022492 - AluSg SINE Alu 0 310 1 435 38 0 0 chr13 19851085 19851138 -82022031 + (TG)n Simple_repeat Simple_repeat 2 54 0 254 157 43 57 chr13 19851485 19851555 -82021614 + MLT1B LTR MaLR 320 388 -2 518 295 62 43 chr13 19851612 19851822 -82021347 - MIR SINE MIR -14 248 35 463 240 101 0 chr13 19851826 19851955 -82021214 - MER5B DNA MER1_type 0 178 37 775 264 79 54 chr13 19851956 19852236 -82020933 - MLT1E LTR MaLR 0 593 368 234 245 0 0 chr13 19852300 19852353 -82020816 - MLT1E LTR MaLR -430 163 111 224 216 0 0 chr13 19852394 19852431 -82020738 - MER5B DNA MER1_type -139 39 3 329 180 0 0 chr13 19852586 19852647 -82020522 + MER116 DNA Mariner 15 75 -5 1094 190 54 54 chr13 19853576 19853907 -82019262 + MER33 DNA MER1_type 1 318 -6 818 191 20 80 chr13 19854119 19854318 -82018851 + MER5A DNA MER1_type 3 189 0 361 266 31 88 chr13 19854321 19854383 -82018786 - MIR SINE MIR -67 195 131 2516 109 61 24 chr13 19854383 19854754 -82018415 + MSTB LTR MaLR 1 390 -36 2616 55 0 0 chr13 19854754 19855062 -82018107 - AluY SINE Alu -3 308 1 2516 109 61 24 chr13 19855062 19855101 -82018068 + MSTB LTR MaLR 390 426 0 361 266 31 88 chr13 19855101 19855230 -82017939 - MIR SINE MIR -131 131 15 1267 188 73 23 chr13 19855575 19855928 -82017241 - MLT1A2 LTR MaLR -2 503 1 201 271 14 0 chr13 19856675 19856745 -82016424 + (TA)n Simple_repeat Simple_repeat 1 71 0 27 29 0 0 chr13 19856748 19856782 -82016387 + AT_rich Low_complexity Low_complexity 1 34 0 342 0 0 0 chr13 19857596 19857634 -82015535 + (CA)n Simple_repeat Simple_repeat 2 39 0 1670 166 107 0 chr13 19858102 19858428 -82014741 + MER46B DNA MER2_type 1 236 0 217 368 99 18 chr13 19859391 19859562 -82013607 - L2 LINE L2 -2521 793 609 1932 179 140 11 chr13 19863455 19863834 -82009335 + MSTA LTR MaLR 1 428 0 2245 110 3 0 chr13 19864212 19864512 -82008657 - AluSx SINE Alu -11 301 1 1334 137 33 0 chr13 19865053 19865265 -82007904 - LTR47A LTR ERVL 0 452 234 966 97 8 0 chr13 19865300 19865434 -82007735 - LTR47A LTR ERVL -314 138 4 237 146 0 0 chr13 19867695 19867736 -82005433 + L1MB3 LINE L1 6143 6183 0 296 268 8 73 chr13 19867842 19867965 -82005204 + MIR3 SINE MIR 62 176 -32 1952 150 3 0 chr13 19867974 19868268 -82004901 + AluSq SINE Alu 1 295 -18 180 0 0 0 chr13 19868271 19868291 -82004878 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 367 321 28 0 chr13 19868304 19868413 -82004756 + MER81 DNA DNA 3 114 0 454 247 62 28 chr13 19868491 19868686 -82004483 - MIR SINE MIR -6 256 4 274 183 67 0 chr13 19868699 19868759 -82004410 - MIR SINE MIR -13 249 186 2428 60 0 29 chr13 19868761 19869077 -82004092 - AluY SINE Alu -4 307 1 420 211 106 10 chr13 19869207 19869311 -82003858 - MER81 DNA DNA 0 114 1 387 0 0 0 chr13 19869479 19869522 -82003647 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1140 152 16 0 chr13 19869962 19870153 -82003016 + AluSg/x SINE Alu 117 310 -2 318 296 83 35 chr13 19870153 19870322 -82002847 - L2 LINE L2 -1211 2103 1927 240 130 0 0 chr13 19870356 19870402 -82002767 + (TG)n Simple_repeat Simple_repeat 1 46 0 1892 160 10 0 chr13 19870778 19871071 -82002098 + AluJo SINE Alu 2 297 -15 1989 124 0 0 chr13 19872396 19872686 -82000483 + L1P5 LINE L1 5517 5806 -348 635 281 112 10 chr13 19872970 19873336 -81999833 + L1ME3 LINE L1 5217 5630 -540 314 222 122 0 chr13 19873337 19873427 -81999742 + MER5A DNA MER1_type 9 109 -80 517 231 22 45 chr13 19873485 19873619 -81999550 + MER5B DNA MER1_type 44 174 -4 487 214 29 103 chr13 19873662 19873716 -81999453 + L1ME3 LINE L1 5717 5773 -389 1713 159 7 13 chr13 19873716 19874018 -81999151 + AluJb SINE Alu 1 300 -12 487 214 29 103 chr13 19874018 19874147 -81999022 + L1ME3 LINE L1 5773 5880 -282 2160 104 7 0 chr13 19874147 19874444 -81998725 + AluSg SINE Alu 1 299 -11 487 214 29 103 chr13 19874444 19874502 -81998667 + L1ME3 LINE L1 5880 5941 -221 231 160 67 27 chr13 19874516 19874591 -81998578 - L1MCa LINE L1 -4363 2063 1986 323 165 12 106 chr13 19875047 19875132 -81998037 + LTR67 LTR ERVL 477 553 -4 1925 156 3 0 chr13 19876435 19876736 -81996433 - AluJo SINE Alu -10 302 1 379 236 11 11 chr13 19878317 19878406 -81994763 - L2 LINE L2 -1 3312 3224 249 270 43 37 chr13 19878569 19878732 -81994437 + L2 LINE L2 878 1041 -2273 1293 281 155 35 chr13 19878733 19879359 -81993810 + Charlie2a DNA MER1_type 1 701 -2161 2753 151 61 30 chr13 19879362 19879904 -81993265 - L1MC3 LINE L1 0 7785 7227 1435 259 65 79 chr13 19879904 19880313 -81992856 + Charlie2a DNA MER1_type 666 1079 -1783 842 37 148 0 chr13 19880313 19880421 -81992748 + L1PA13 LINE L1 6036 6159 -4 1435 259 65 79 chr13 19880421 19881012 -81992157 + Charlie2a DNA MER1_type 1079 1652 -1210 2038 138 3 0 chr13 19881012 19881302 -81991867 + AluSp SINE Alu 1 291 -22 1344 213 32 23 chr13 19881311 19881621 -81991548 + L1MDa LINE L1 86 398 -6142 319 259 49 3 chr13 19881722 19881877 -81991292 - L2 LINE L2 -243 3070 2873 2139 307 137 28 chr13 19882156 19883474 -81989695 - L2 LINE L2 -658 2656 1196 203 197 30 45 chr13 19883907 19883973 -81989196 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 375 254 149 29 chr13 19884894 19885086 -81988083 + MIR SINE MIR 32 249 -13 301 277 11 53 chr13 19885257 19885351 -81987818 + MIR SINE MIR 60 149 -59 191 184 102 0 chr13 19885375 19885424 -81987745 + MIR3 SINE MIR 132 185 -23 416 262 200 7 chr13 19886401 19886691 -81986478 - L1ME LINE L1 -567 5603 5258 638 279 76 18 chr13 19886724 19887000 -81986169 - MLT1J LTR MaLR -151 360 69 195 267 198 0 chr13 19887007 19887093 -81986076 + L3 LINE CR1 1154 1256 -321 261 309 12 36 chr13 19887837 19887921 -81985248 - L2 LINE L2 -15 3257 3176 560 121 0 0 chr13 19888378 19888461 -81984708 + AluJ/FRAM SINE Alu 230 312 0 346 215 0 38 chr13 19888477 19888556 -81984613 + FLAM_A SINE Alu 41 116 -17 2207 119 0 0 chr13 19888622 19888925 -81984244 - AluSx SINE Alu -9 303 1 602 184 128 28 chr13 19888985 19889126 -81984043 - L2 LINE L2 0 3313 3159 599 268 193 5 chr13 19889248 19889461 -81983708 + MIR SINE MIR 9 261 -1 425 132 88 0 chr13 19890432 19890500 -81982669 + MER5A DNA MER1_type 2 75 -114 1236 161 72 14 chr13 19890502 19890542 -81982627 + AluJb SINE Alu 1 37 -275 4017 139 6 35 chr13 19890542 19891196 -81981973 - MER41B LTR ERV1 0 635 1 1236 161 72 14 chr13 19891196 19891378 -81981791 + AluJb SINE Alu 37 236 -76 213 254 0 34 chr13 19892223 19892282 -81980887 + L2 LINE L2 1761 1817 -1497 342 286 17 50 chr13 19892304 19892371 -81980798 + MER5B DNA MER1_type 1 64 -114 2097 143 140 29 chr13 19892371 19892756 -81980413 + MSTA LTR MaLR 1 428 0 342 286 17 50 chr13 19892756 19892807 -81980362 + MER5B DNA MER1_type 64 115 -63 1645 176 0 21 chr13 19892913 19893203 -81979966 - AluJo SINE Alu -24 288 5 3343 153 24 43 chr13 19893779 19894305 -81978864 + MER41B LTR ERV1 1 342 -136 2316 84 3 34 chr13 19894305 19894628 -81978541 - AluSp SINE Alu 0 313 1 3343 153 24 43 chr13 19894628 19894751 -81978418 + MER41B LTR ERV1 342 466 -12 801 223 0 48 chr13 19894780 19894968 -81978201 - LTR16A LTR ERVL -13 437 259 227 323 46 0 chr13 19895006 19895071 -81978098 - MIR SINE MIR -174 88 21 576 209 26 89 chr13 19895109 19895143 -81978026 + MER106A DNA MER1_type 15 50 -186 1795 166 0 17 chr13 19895143 19895444 -81977725 - AluJo SINE Alu -15 297 2 576 209 26 89 chr13 19895444 19895600 -81977569 + MER106A DNA MER1_type 50 193 -43 2240 66 7 0 chr13 19895608 19895882 -81977287 + AluSp SINE Alu 1 276 -37 333 0 0 0 chr13 19896432 19896469 -81976700 + (CA)n Simple_repeat Simple_repeat 2 38 0 1234 215 52 17 chr13 19896500 19896788 -81976381 + AluJb SINE Alu 1 298 -14 340 333 74 19 chr13 19897384 19897546 -81975623 + L2 LINE L2 3077 3247 -25 342 291 66 44 chr13 19897962 19898144 -81975025 + L3b LINE CR1 1181 1366 -217 388 228 13 0 chr13 19898205 19898284 -81974885 + MER5A DNA MER1_type 32 111 -78 205 377 26 13 chr13 19898949 19899103 -81974066 + L2 LINE L2 2886 3041 -231 502 238 74 8 chr13 19899271 19899393 -81973776 + L2 LINE L2 3182 3311 -2 226 179 60 48 chr13 19899725 19899809 -81973360 - HSMAR1 DNA Mariner -1202 85 1 1298 197 55 39 chr13 19901640 19901970 -81971199 + MLT1B LTR MaLR 15 349 -41 6121 142 14 8 chr13 19902094 19903836 -81969333 - L1PA13 LINE L1 -34 6129 4383 1101 292 89 28 chr13 19903828 19904658 -81968511 - L1MEd LINE L1 -1891 4753 3873 * 327 321 61 16 chr13 19904687 19904933 -81968236 - L1MEd LINE L1 -3437 3207 2951 2632 234 40 59 chr13 19904956 19905701 -81967468 + MLT1C-int LTR MaLR 637 1367 -4 1519 224 32 55 chr13 19905719 19906152 -81967017 + MLT1C LTR MaLR 45 467 0 406 316 55 20 chr13 19906161 19906414 -81966755 - L1MEd LINE L1 -4003 2822 2561 344 312 56 34 chr13 19906744 19906978 -81966191 - HAL1 LINE L1 -769 1738 1500 347 256 11 33 chr13 19907018 19907108 -81966061 + MER5A DNA MER1_type 51 138 -51 413 266 87 33 chr13 19907173 19907407 -81965762 - L1MEd LINE L1 -4814 1847 1550 1431 112 5 5 chr13 19908420 19908617 -81964552 - L1PA6 LINE L1 0 6154 5958 219 69 0 0 chr13 19908826 19908855 -81964314 + (TC)n Simple_repeat Simple_repeat 1 29 0 649 330 130 50 chr13 19908917 19909926 -81963243 + L2 LINE L2 1608 2696 -618 608 236 111 42 chr13 19910203 19910419 -81962750 - LTR16B LTR ERVL -127 337 107 2111 321 62 27 chr13 19910794 19911980 -81961189 + ERVL LTR ERVL 4143 5370 -394 321 232 11 0 chr13 19912092 19912187 -81960982 + L1MA4 LINE L1 6200 6295 -5 183 42 0 0 chr13 19912201 19912225 -81960944 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1940 143 0 0 chr13 19912225 19912505 -81960664 - AluSx SINE Alu -32 280 1 1799 255 77 8 chr13 19912508 19913093 -81960076 + Charlie7 DNA MER1_type 1477 2101 -511 210 329 82 0 chr13 19913236 19913309 -81959860 + MIR SINE MIR 27 105 -103 396 307 22 7 chr13 19914239 19914376 -81958793 + L2 LINE L2 3175 3313 0 2039 136 7 19 chr13 19914578 19914887 -81958282 + AluSx SINE Alu 1 305 -7 5444 135 22 31 chr13 19915830 19916542 -81956627 - MER4D LTR ERV1 0 903 186 2393 94 0 3 chr13 19916542 19916849 -81956320 - AluSx SINE Alu -6 306 1 5444 135 22 31 chr13 19916849 19916991 -81956178 - MER4D LTR ERV1 -717 186 55 3465 143 72 21 chr13 19916991 19917573 -81955596 - LTR9 LTR ERV1 0 612 1 5444 135 22 31 chr13 19917573 19917623 -81955546 - MER4D LTR ERV1 -848 55 6 2002 112 4 14 chr13 19917768 19918044 -81955125 - AluSx SINE Alu -23 289 17 1970 181 117 49 chr13 19919822 19920291 -81952878 - MLT1D LTR MaLR 0 505 5 242 319 54 49 chr13 19921006 19921088 -81952081 - L2 LINE L2 -1331 1983 1903 1475 201 30 24 chr13 19921088 19921386 -81951783 + AluJo SINE Alu 1 300 -12 242 319 54 49 chr13 19921386 19921488 -81951681 - L2 LINE L2 -1411 1903 1798 1674 191 78 24 chr13 19922028 19922400 -81950769 - MSTD LTR MaLR 0 396 5 2129 101 19 16 chr13 19923920 19924227 -81948942 + AluSx SINE Alu 1 308 -4 288 91 0 0 chr13 19924557 19924601 -81948568 + (CA)n Simple_repeat Simple_repeat 1 44 0 1844 222 42 48 chr13 19924934 19925196 -81947973 + MER20B DNA MER1_type 1 260 -523 2274 96 0 13 chr13 19925196 19925497 -81947672 + AluSq SINE Alu 1 297 -16 1844 222 42 48 chr13 19925497 19925760 -81947409 + MER20B DNA MER1_type 260 523 -260 204 40 0 0 chr13 19925982 19926007 -81947162 + (TA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 19926788 19926809 -81946360 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr13 19926871 19926910 -81946259 + AT_rich Low_complexity Low_complexity 1 39 0 543 268 102 38 chr13 19926910 19926948 -81946221 - L1MC4 LINE L1 -2 8040 8006 1499 136 45 0 chr13 19926948 19927168 -81946001 - MER30 DNA MER1_type 0 230 1 543 268 102 38 chr13 19927168 19927364 -81945805 - L1MC4 LINE L1 -36 8006 7791 2154 119 0 7 chr13 19928272 19928574 -81944595 - AluSx SINE Alu -8 304 5 1156 146 22 0 chr13 19929177 19929355 -81943814 + AluJb SINE Alu 129 310 -2 2184 128 0 0 chr13 19929842 19930140 -81943029 - AluSq SINE Alu -15 298 1 2650 142 40 19 chr13 19930227 19930651 -81942518 + Tigger2a DNA MER2_type 2 434 0 180 0 0 0 chr13 19930841 19930861 -81942308 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 1045 164 101 24 chr13 19931891 19932122 -81941047 - AluJb SINE Alu 0 305 59 3962 217 24 26 chr13 19932241 19933419 -81939750 + L1PA12 LINE L1 728 2681 -4903 2105 100 0 0 chr13 19933425 19933696 -81939473 + L1PA11 LINE L1 5902 6172 -2 478 191 118 7 chr13 19934548 19934684 -81938485 - MSTB LTR MaLR 0 428 278 3935 192 1 10 chr13 19934684 19935396 -81937773 - MST-int LTR MaLR -406 1245 540 1488 156 83 60 chr13 19935401 19935715 -81937454 - MSTB LTR MaLR -105 321 1 540 306 129 9 chr13 19935845 19936077 -81937092 - MIR SINE MIR 0 262 3 347 212 12 0 chr13 19936599 19936684 -81936485 + GA-rich Low_complexity Low_complexity 3 88 0 604 306 35 27 chr13 19936825 19937194 -81935975 + L1MEc LINE L1 1290 1661 -4735 1779 230 117 10 chr13 19938027 19938532 -81934637 + MLT2F LTR ERVL 31 589 -74 1042 209 134 28 chr13 19938533 19938689 -81934480 - MLT1F LTR MaLR -1 541 403 2399 89 0 0 chr13 19938689 19938991 -81934178 + AluSx SINE Alu 1 302 -10 1042 209 134 28 chr13 19938991 19939002 -81934167 - MLT1F LTR MaLR -139 403 395 1053 209 47 14 chr13 19939002 19939217 -81933952 - MER58A DNA MER1_type -2 222 1 1042 209 134 28 chr13 19939217 19939483 -81933686 - MLT1F LTR MaLR -147 395 1 432 258 58 58 chr13 19939632 19939764 -81933405 + HAL1b LINE L1 283 417 -931 1874 153 0 23 chr13 19939764 19940065 -81933104 - AluJo SINE Alu -18 294 1 432 258 58 58 chr13 19940065 19940192 -81932977 + HAL1b LINE L1 416 542 -806 200 219 141 133 chr13 19940463 19940591 -81932578 - L2 LINE L2 -215 3057 2929 457 332 106 8 chr13 19940982 19941217 -81931952 - L2 LINE L2 -468 2846 2589 2076 103 0 0 chr13 19942038 19942309 -81930860 + AluSq SINE Alu 10 280 -33 1759 120 123 25 chr13 19942409 19942726 -81930443 - LTR26 LTR ERV1 -255 348 1 210 338 122 14 chr13 19942734 19942873 -81930296 + MIR3 SINE MIR 38 191 -17 2400 60 0 0 chr13 19943130 19943464 -81929705 + AluY SINE Alu 1 334 0 8512 124 21 19 chr13 19945169 19946134 -81927035 - HSMAR2 DNA Mariner -1 1301 340 2832 63 0 0 chr13 19946134 19946491 -81926678 - L1PA7 LINE L1 0 6154 5820 2093 128 0 0 chr13 19946491 19946780 -81926389 - AluSq SINE Alu -24 289 1 8512 124 21 19 chr13 19946780 19947111 -81926058 - HSMAR2 DNA Mariner -961 341 1 22 70 0 0 chr13 19947394 19947437 -81925732 + AT_rich Low_complexity Low_complexity 1 43 0 408 345 62 23 chr13 19950395 19950653 -81922516 - L2 LINE L2 -822 2492 2225 2307 123 37 35 chr13 19950774 19951148 -81922021 - THE1C LTR MaLR 0 375 1 220 347 40 84 chr13 19951602 19951876 -81921293 - L2 LINE L2 -2797 517 256 453 269 43 43 chr13 19952736 19952877 -81920292 + MIR SINE MIR 13 153 -109 3429 197 13 45 chr13 19952886 19953642 -81919527 + L1PA12 LINE L1 2 733 -6848 28 0 0 0 chr13 19954848 19954876 -81918293 + AT_rich Low_complexity Low_complexity 1 28 0 483 243 50 31 chr13 19954897 19955117 -81918052 - L1MC5 LINE L1 -519 7493 7237 2153 177 8 11 chr13 19955278 19955640 -81917529 - MLT1A1 LTR MaLR -4 361 1 639 110 0 0 chr13 19956004 19956086 -81917083 - 5S rRNA rRNA -33 88 7 2467 96 45 25 chr13 19956369 19956724 -81916445 - THE1B LTR MaLR -2 362 1 807 207 22 84 chr13 19957220 19957353 -81915816 + MER20B DNA MER1_type 524 633 -150 999 141 43 16 chr13 19957353 19957538 -81915631 - L1MB2 LINE L1 -2 6169 5980 807 207 22 84 chr13 19957538 19957679 -81915490 + MER20B DNA MER1_type 633 781 -2 331 274 128 0 chr13 19957684 19957786 -81915383 + L2 LINE L2 3199 3313 0 1543 191 61 0 chr13 19957804 19957925 -81915244 + AluJo SINE Alu 1 113 -199 206 79 0 26 chr13 19957925 19957963 -81915206 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 1543 191 61 0 chr13 19957963 19958135 -81915034 + AluJo SINE Alu 113 312 0 1264 99 11 22 chr13 19958671 19958852 -81914317 + AluSq SINE Alu 121 299 -14 2171 218 23 7 chr13 19959265 19959705 -81913464 - MER39 LTR ERV1 0 707 261 1905 127 0 0 chr13 19959852 19960112 -81913057 + AluSx SINE Alu 1 260 -52 1097 164 6 0 chr13 19960125 19960308 -81912861 + AluJb SINE Alu 129 312 0 1076 218 34 11 chr13 19960318 19960584 -81912585 + MER69 DNA AcHobo 555 826 -400 2130 110 24 0 chr13 19961001 19961292 -81911877 + AluSq SINE Alu 1 298 -15 24 0 0 0 chr13 19961489 19961513 -81911656 + AT_rich Low_complexity Low_complexity 1 24 0 2188 186 55 14 chr13 19961594 19962029 -81911140 + MSTB2 LTR MaLR 1 453 -4 33 0 0 0 chr13 19962535 19962568 -81910601 + AT_rich Low_complexity Low_complexity 1 33 0 744 306 82 41 chr13 19963375 19963862 -81909307 - LTR33 LTR ERVL 0 521 15 2026 117 30 10 chr13 19964181 19964479 -81908690 + AluSc SINE Alu 1 304 -5 558 190 0 10 chr13 19964860 19964960 -81908209 + MER5B DNA MER1_type 1 99 -79 185 268 0 0 chr13 19965008 19965049 -81908120 - MIR3 SINE MIR -28 180 140 778 246 91 55 chr13 19965049 19965559 -81907610 + LTR48B LTR ERV1 3 772 -12 208 186 47 0 chr13 19965686 19965729 -81907440 - L2 LINE L2 -6 3307 3263 957 204 73 0 chr13 19965750 19965956 -81907213 + L1ME1 LINE L1 5707 5927 -239 4399 139 24 7 chr13 19965957 19966656 -81906513 + MER50 LTR ERV1 1 711 -23 827 215 46 38 chr13 19966657 19966875 -81906294 + L1MB8 LINE L1 5928 6150 -28 1427 204 123 17 chr13 19966875 19967233 -81905936 - MSTD LTR MaLR 0 396 1 827 215 46 38 chr13 19967233 19967251 -81905918 + L1MB8 LINE L1 6150 6166 -12 382 297 77 28 chr13 19967387 19967569 -81905600 - MER34 LTR ERV1 -7 535 345 237 267 99 30 chr13 19967813 19967914 -81905255 - MER34 LTR ERV1 -413 129 22 370 198 12 0 chr13 19967931 19968012 -81905157 + MER63C DNA MER1_type 92 173 -757 2440 91 0 0 chr13 19968107 19968415 -81904754 + AluSq SINE Alu 1 308 -5 3423 107 11 0 chr13 19968421 19968880 -81904289 + L1PA11 LINE L1 5709 6172 -2 446 214 48 0 chr13 19969016 19969119 -81904050 + MER63C DNA MER1_type 260 367 -563 1593 188 138 21 chr13 19969319 19969755 -81903414 + LTR54B LTR ERV1 10 496 -2 1900 144 0 0 chr13 19970989 19971267 -81901902 - AluSg SINE Alu -32 278 1 1939 193 62 7 chr13 19971267 19971702 -81901467 + MER63C DNA MER1_type 473 931 0 253 182 15 30 chr13 19971711 19971777 -81901392 - MIR SINE MIR -123 139 75 26 64 0 0 chr13 19972890 19972937 -81900232 + GC_rich Low_complexity Low_complexity 1 47 0 343 290 86 90 chr13 19973029 19973274 -81899895 - L1M2 LINE L1 -5848 1001 758 294 299 186 6 chr13 19974254 19974421 -81898748 + MIR SINE MIR 32 228 -34 1006 167 0 28 chr13 19974570 19974750 -81898419 + FRAM SINE Alu 1 174 -2 875 147 0 7 chr13 19974886 19975029 -81898140 + AluJ SINE Alu 1 142 -170 995 185 6 0 chr13 19975129 19975291 -81897878 + AluJ SINE Alu 131 293 -19 2057 111 30 7 chr13 19975701 19975998 -81897171 - AluSg SINE Alu -6 304 1 723 172 52 0 chr13 19976190 19976306 -81896863 - FLAM_A SINE Alu -11 122 1 694 264 130 13 chr13 19976630 19976861 -81896308 - MIR SINE MIR -3 259 2 466 326 143 46 chr13 19977375 19977746 -81895423 + L3 LINE CR1 1160 1566 -11 1698 171 22 4 chr13 19979511 19979785 -81893384 + AluJo SINE Alu 1 279 -33 401 277 80 50 chr13 19980064 19980302 -81892867 + L1ME3A LINE L1 5512 5756 -365 786 132 0 9 chr13 19980495 19980609 -81892560 + FRAM SINE Alu 34 146 -30 183 80 0 0 chr13 19980744 19980769 -81892400 + (TA)n Simple_repeat Simple_repeat 2 26 0 25 31 0 0 chr13 19981594 19981626 -81891543 + AT_rich Low_complexity Low_complexity 1 32 0 420 248 82 16 chr13 19981740 19981862 -81891307 + MER20B DNA MER1_type 65 197 -22 1257 264 46 78 chr13 19983219 19983783 -81889386 + MLT1H LTR MaLR 4 549 0 303 203 81 0 chr13 19983790 19983864 -81889305 - MLT1F LTR MaLR -7 535 456 553 264 126 0 chr13 19983913 19984080 -81889089 + MLT1G1 LTR MaLR 1 188 -407 1921 142 0 0 chr13 19984299 19984567 -81888602 + AluSx SINE Alu 29 296 -16 853 251 100 26 chr13 19984650 19984961 -81888208 + L1ME3A LINE L1 5824 6157 -13 873 244 112 42 chr13 19984988 19985300 -81887869 + MLT1J LTR MaLR 101 434 -77 2112 113 3 42 chr13 19986240 19986550 -81886619 + AluSx SINE Alu 6 303 -9 298 343 164 0 chr13 19986818 19986964 -81886205 - MIR SINE MIR -61 201 32 384 306 89 17 chr13 19987151 19987331 -81885838 - MIR SINE MIR -50 212 20 2122 120 10 0 chr13 19987384 19987676 -81885493 - AluSx SINE Alu -17 295 1 754 297 116 36 chr13 19987980 19988467 -81884702 - L1MC4a LINE L1 -331 5839 5387 1821 196 0 0 chr13 19988467 19988778 -81884391 - AluJb SINE Alu -1 311 1 754 297 116 36 chr13 19988778 19988879 -81884290 - L1MC4a LINE L1 -783 5387 5295 2030 149 0 0 chr13 19990192 19990488 -81882681 + AluJb SINE Alu 7 302 -10 2418 165 103 9 chr13 19991270 19991706 -81881463 - MER61D LTR ERV1 0 501 25 283 213 0 0 chr13 19991673 19991734 -81881435 - LTR28 LTR ERV1 -959 61 1 * 359 216 105 70 chr13 19992058 19992229 -81880940 - MLT1H1 LTR MaLR -33 522 346 1328 180 51 38 chr13 19992252 19992604 -81880565 + MER58B DNA MER1_type 11 340 -1 2135 112 6 59 chr13 19992633 19992955 -81880214 - AluSq SINE Alu -8 305 1 231 271 108 36 chr13 19992963 19993129 -81880040 - MLT1H1 LTR MaLR -261 288 111 3374 171 56 64 chr13 19993357 19994149 -81879020 - LTR1 LTR ERV1 0 785 1 1866 167 67 110 chr13 19994161 19994687 -81878482 + MLT1D LTR MaLR 1 503 -2 1271 147 5 0 chr13 19994844 19995035 -81878134 - AluSg/x SINE Alu -15 297 106 436 19 0 19 chr13 19995684 19995736 -81877433 - AluYb8 SINE Alu -27 291 241 267 233 164 43 chr13 19996138 19996254 -81876915 + L2 LINE L2 3128 3257 -56 180 303 15 30 chr13 19996435 19996501 -81876668 - L2 LINE L2 -64 3208 3144 222 171 0 0 chr13 19997390 19997431 -81875738 + (TA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr13 19997614 19997635 -81875534 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 857 235 0 0 chr13 19998249 19998419 -81874750 - FRAM SINE Alu -5 171 2 2395 74 20 0 chr13 19998497 19998793 -81874376 + AluSc SINE Alu 1 302 -7 362 289 31 23 chr13 19999176 19999304 -81873865 + L2 LINE L2 3184 3312 -1 204 311 122 0 chr13 20001410 20001484 -81871685 + L2 LINE L2 3204 3286 -27 189 0 0 0 chr13 20001572 20001593 -81871576 + (TC)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 20001640 20001662 -81871507 + AT_rich Low_complexity Low_complexity 1 22 0 4132 265 172 5 chr13 20001793 20002666 -81870503 + L2 LINE L2 1190 1916 -1397 2310 104 3 7 chr13 20002666 20002975 -81870194 - AluSx SINE Alu -4 308 1 4132 265 172 5 chr13 20002975 20003933 -81869236 + L2 LINE L2 1916 3313 0 223 196 36 18 chr13 20003930 20003986 -81869183 - MIR3 SINE MIR -1 207 151 * 2257 101 0 0 chr13 20005301 20005587 -81867582 + AluSg SINE Alu 1 286 -24 2230 125 0 0 chr13 20006173 20006484 -81866685 + AluSx SINE Alu 1 311 -1 2286 95 3 16 chr13 20006664 20006968 -81866201 - AluSx SINE Alu -12 300 1 1557 141 119 15 chr13 20007308 20007577 -81865592 + AluSx SINE Alu 15 311 -1 364 230 240 0 chr13 20008994 20009094 -81864075 - MER5A DNA MER1_type 0 189 66 2336 85 0 7 chr13 20009095 20009400 -81863769 - AluSq SINE Alu -10 303 1 440 253 129 17 chr13 20010233 20010474 -81862695 + L1MC5 LINE L1 7643 7910 -51 22 35 0 0 chr13 20010502 20010531 -81862638 + AT_rich Low_complexity Low_complexity 1 29 0 600 237 6 41 chr13 20010602 20010771 -81862398 + MER91B DNA MER1_type 27 189 -1 333 181 118 94 chr13 20010987 20011114 -81862055 - L1ME4a LINE L1 -32 6089 5960 1059 178 5 11 chr13 20011122 20011307 -81861862 - AluJo SINE Alu -128 184 1 384 265 45 8 chr13 20011307 20011439 -81861730 - L1ME4a LINE L1 -180 5941 5805 3649 101 29 29 chr13 20011619 20011974 -81861195 + MER41A LTR ERV1 11 368 -186 2357 96 3 0 chr13 20011974 20012286 -81860883 + AluSp SINE Alu 1 313 0 3649 101 29 29 chr13 20012286 20012474 -81860695 + MER41A LTR ERV1 367 554 0 2436 68 0 13 chr13 20012737 20013048 -81860121 - AluY SINE Alu -4 307 1 826 128 0 0 chr13 20013616 20013725 -81859444 - AluSg/x SINE Alu -18 292 184 212 170 75 57 chr13 20014102 20014155 -81859014 + MIR SINE MIR 111 164 -98 478 147 0 0 chr13 20014258 20014326 -81858843 - AluS SINE Alu -243 70 3 2276 101 3 3 chr13 20014360 20014657 -81858512 + AluSx SINE Alu 1 297 -15 291 219 24 61 chr13 20014658 20014740 -81858429 + L2 LINE L2 2644 2722 -592 454 176 10 29 chr13 20014740 20014842 -81858327 + MER4B LTR ERV1 1 100 -510 4145 132 19 20 chr13 20014871 20015507 -81857662 + MER41B LTR ERV1 1 635 0 353 281 244 12 chr13 20015507 20015749 -81857420 + L2 LINE L2 3016 3313 0 1899 196 83 10 chr13 20016218 20016616 -81856553 + MSTB1 LTR MaLR 1 427 -5 735 89 10 0 chr13 20017028 20017129 -81856040 + MER41B LTR ERV1 1 102 -533 378 93 27 107 chr13 20017093 20017168 -81856001 - 5S rRNA rRNA -4 117 49 * 345 283 30 10 chr13 20019404 20019503 -81853666 + MER5A DNA MER1_type 9 109 -80 568 297 28 11 chr13 20020859 20021041 -81852128 - MER5A DNA MER1_type -1 188 4 1705 179 24 14 chr13 20021169 20021466 -81851703 + AluJo SINE Alu 1 300 -12 2116 195 101 6 chr13 20021473 20021950 -81851219 + L1MB4 LINE L1 5600 6121 -59 1907 113 50 0 chr13 20021950 20022232 -81850937 - AluSx SINE Alu -16 296 1 272 200 36 0 chr13 20022240 20022295 -81850874 + AluSp SINE Alu 114 170 -133 1946 117 15 0 chr13 20022820 20023094 -81850075 + AluSq SINE Alu 18 295 -18 504 141 12 0 chr13 20023146 20023231 -81849938 + L1MB8 LINE L1 6093 6178 0 2401 178 141 6 chr13 20023865 20024349 -81848820 - MER44D DNA MER2_type 0 605 2 333 291 12 0 chr13 20024352 20024438 -81848731 + L2 LINE L2 3185 3271 -1 2281 126 0 0 chr13 20024488 20024798 -81848371 + AluSx SINE Alu 1 310 -2 239 317 0 0 chr13 20024815 20024875 -81848294 - L2 LINE L2 0 3272 3213 245 254 16 32 chr13 20025075 20025138 -81848031 + L2 LINE L2 3250 3311 -2 2303 105 0 0 chr13 20026833 20027128 -81846041 + AluSq SINE Alu 1 295 -18 733 299 42 17 chr13 20027363 20027721 -81845448 + HAL1 LINE L1 1227 1593 -914 2352 87 0 3 chr13 20027828 20028126 -81845043 + AluY SINE Alu 1 297 -14 535 291 37 16 chr13 20028152 20028341 -81844828 + MIR SINE MIR 52 244 -18 412 284 191 33 chr13 20028415 20028630 -81844539 + MIR SINE MIR 14 262 0 1243 206 90 34 chr13 20030105 20030483 -81842686 + Charlie4a DNA MER1_type 63 461 -47 2252 65 4 0 chr13 20030593 20030872 -81842297 - AluSx SINE Alu -32 280 1 2626 37 0 0 chr13 20031636 20031936 -81841233 - AluY SINE Alu -11 300 1 288 197 141 0 chr13 20032071 20032142 -81841027 + MER53 DNA DNA 1 81 -108 526 177 108 15 chr13 20032234 20032364 -81840805 + L1MB3 LINE L1 6042 6183 0 288 171 66 26 chr13 20032434 20032510 -81840659 - MER53 DNA DNA -110 79 1 312 306 81 38 chr13 20032620 20032780 -81840389 - L1M2 LINE L1 -5930 919 753 226 0 0 0 chr13 20033096 20033123 -81840046 + L1MC2 LINE L1 6302 6328 -16 21 36 0 0 chr13 20034186 20034214 -81838955 + AT_rich Low_complexity Low_complexity 1 28 0 782 221 164 14 chr13 20034303 20034583 -81838586 + MER5C DNA MER1_type 3 324 0 2080 112 27 0 chr13 20034988 20035282 -81837887 + AluSc SINE Alu 1 302 -7 191 167 24 0 chr13 20036059 20036101 -81837068 + (CA)n Simple_repeat Simple_repeat 2 44 0 1857 176 48 9 chr13 20036137 20036472 -81836697 + MER7A DNA MER2_type 1 346 0 207 69 0 0 chr13 20036608 20036637 -81836532 + (CAGTT)n Simple_repeat Simple_repeat 2 30 0 443 163 255 0 chr13 20037865 20037963 -81835206 + FRAM SINE Alu 19 141 -35 308 239 97 0 chr13 20038334 20038447 -81834722 - L1ME4a LINE L1 -4 6117 5994 387 211 0 14 chr13 20038471 20038542 -81834627 + Charlie1 DNA MER1_type 1 70 -2691 * 1436 209 94 0 chr13 20038541 20038923 -81834246 + Charlie1 DNA MER1_type 2343 2760 -1 385 65 16 16 chr13 20040126 20040188 -81832981 + (TG)n Simple_repeat Simple_repeat 2 63 0 806 192 58 13 chr13 20040710 20040866 -81832303 + AluJo SINE Alu 120 282 -30 1955 167 0 0 chr13 20041375 20041687 -81831482 + AluJb SINE Alu 1 312 0 208 320 0 39 chr13 20041768 20041846 -81831323 + MIR SINE MIR 66 140 -68 180 0 0 0 chr13 20043290 20043310 -81829859 + (CA)n Simple_repeat Simple_repeat 2 21 0 535 274 124 0 chr13 20043972 20044158 -81829011 - MIR SINE MIR -49 213 5 429 314 80 81 chr13 20044445 20044957 -81828212 - L2 LINE L2 0 3272 2761 836 127 110 0 chr13 20044957 20045075 -81828094 - FLAM_C SINE Alu 0 133 3 429 314 80 81 chr13 20045075 20045122 -81828047 - L2 LINE L2 -511 2761 2715 2338 110 0 0 chr13 20045122 20045430 -81827739 - AluSx SINE Alu -4 308 1 429 314 80 81 chr13 20045430 20045582 -81827587 - L2 LINE L2 -557 2715 2558 186 304 169 11 chr13 20045681 20045865 -81827304 - L2 LINE L2 -1809 1505 1293 1785 137 77 58 chr13 20046052 20046417 -81826752 + THE1C LTR MaLR 4 375 0 231 269 0 0 chr13 20049181 20049233 -81823936 - L2 LINE L2 -1 3312 3261 255 276 20 0 chr13 20050971 20051069 -81822100 + L1ME3 LINE L1 5555 5654 -508 264 111 0 0 chr13 20051325 20051370 -81821799 + (TA)n Simple_repeat Simple_repeat 2 46 0 560 286 59 23 chr13 20051380 20051710 -81821459 + L1ME3 LINE L1 5684 5923 -239 26 30 0 0 chr13 20051850 20051883 -81821286 + AT_rich Low_complexity Low_complexity 1 33 0 2235 134 48 31 chr13 20052065 20052423 -81820746 + THE1B LTR MaLR 1 364 0 1014 144 133 26 chr13 20053276 20053471 -81819698 - MER20 DNA MER1_type -3 216 1 1833 160 0 0 chr13 20054017 20054340 -81818829 - AluJb SINE Alu 0 323 1 27 73 0 0 chr13 20054672 20054727 -81818442 + AT_rich Low_complexity Low_complexity 1 55 0 189 0 0 0 chr13 20054960 20054981 -81818188 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 2609 55 0 7 chr13 20055757 20056065 -81817104 - AluY SINE Alu -5 306 1 3519 219 59 52 chr13 20056135 20057405 -81815764 + L1M4 LINE L1 3441 4719 -1427 228 323 71 8 chr13 20057557 20057684 -81815485 - L2 LINE L2 -995 2319 2185 945 245 69 87 chr13 20057721 20058183 -81814986 + L2 LINE L2 2608 3051 -262 2290 109 3 0 chr13 20058183 20058485 -81814684 - AluSg SINE Alu -7 303 1 945 245 69 87 chr13 20058485 20058575 -81814594 + L2 LINE L2 3051 3141 -172 387 0 0 0 chr13 20058592 20058635 -81814534 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr13 20058641 20058670 -81814499 + AT_rich Low_complexity Low_complexity 1 29 0 1503 184 0 22 chr13 20058670 20058942 -81814227 - L1MB5 LINE L1 -8 6166 5901 2815 185 33 41 chr13 20058980 20059318 -81813851 - L1MB5 LINE L1 -416 5758 5419 2340 107 0 16 chr13 20059318 20059635 -81813534 - AluSx SINE Alu 0 312 1 2815 185 33 41 chr13 20059635 20060357 -81812812 - L1MB5 LINE L1 -755 5419 4704 2322 95 0 13 chr13 20060357 20060663 -81812506 - AluSg SINE Alu -8 302 1 2815 185 33 41 chr13 20060663 20060696 -81812473 - L1MB5 LINE L1 -1470 4704 4672 545 248 35 28 chr13 20060708 20060849 -81812320 + L2 LINE L2 3172 3313 0 2223 112 0 6 chr13 20061020 20061332 -81811837 - AluSg SINE Alu 0 310 1 27 0 0 0 chr13 20061874 20061901 -81811268 + AT_rich Low_complexity Low_complexity 1 27 0 216 222 37 56 chr13 20062782 20062836 -81810333 + L2 LINE L2 3251 3303 -10 945 204 41 0 chr13 20062947 20063143 -81810026 + MER20 DNA MER1_type 15 218 -1 1761 160 0 57 chr13 20063381 20063712 -81809457 + AluJo SINE Alu 1 312 0 518 146 122 65 chr13 20063753 20063876 -81809293 - FLAM_C SINE Alu -11 132 3 3853 168 37 40 chr13 20064423 20065294 -81807875 + L1MB4 LINE L1 5262 6131 -49 1655 151 26 40 chr13 20065294 20065598 -81807571 + AluJo SINE Alu 1 300 -12 3853 168 37 40 chr13 20065598 20065645 -81807524 + L1MB4 LINE L1 6131 6177 -3 207 128 77 0 chr13 20067626 20067665 -81805504 + MIR SINE MIR 123 164 -98 2520 46 0 7 chr13 20067823 20068126 -81805043 + AluY SINE Alu 1 301 -10 730 180 0 0 chr13 20068217 20068356 -81804813 + L1MC1 LINE L1 5988 6126 -207 208 182 91 0 chr13 20068824 20068868 -81804301 + L2 LINE L2 3265 3312 -1 1740 166 0 14 chr13 20068927 20069217 -81803952 - AluJb SINE Alu -26 286 1 21 0 0 0 chr13 20069429 20069450 -81803719 + AT_rich Low_complexity Low_complexity 1 21 0 2305 108 3 0 chr13 20069603 20069909 -81803260 - AluSp SINE Alu -6 307 1 1166 182 162 3 chr13 20070786 20071082 -81802087 + MER2 DNA MER2_type 2 344 0 219 249 6 152 chr13 20071154 20071319 -81801850 + L2 LINE L2 3169 3309 -4 2492 68 0 0 chr13 20072140 20072448 -81800721 + AluY SINE Alu 1 308 -3 180 77 0 0 chr13 20073441 20073467 -81799702 + (GA)n Simple_repeat Simple_repeat 1 26 0 199 297 88 33 chr13 20074482 20074573 -81798596 - L2 LINE L2 -18 3295 3200 21 36 0 0 chr13 20076047 20076075 -81797094 + AT_rich Low_complexity Low_complexity 1 28 0 230 270 0 0 chr13 20077542 20077605 -81795564 + C-rich Low_complexity Low_complexity 5 67 0 23 0 0 0 chr13 20077630 20077653 -81795516 + GC_rich Low_complexity Low_complexity 1 23 0 240 35 0 0 chr13 20077720 20077749 -81795420 + (CACCC)n Simple_repeat Simple_repeat 4 32 0 381 257 141 108 chr13 20077962 20078603 -81794566 + L1M2 LINE L1 524 1295 -5554 23 33 0 0 chr13 20081710 20081740 -81791429 + AT_rich Low_complexity Low_complexity 1 30 0 186 298 170 29 chr13 20081968 20082139 -81791030 - L2 LINE L2 -2 3270 3076 318 288 120 0 chr13 20082225 20082350 -81790819 - MER91A DNA MER1_type -52 144 5 182 319 80 0 chr13 20082567 20082680 -81790489 - MIR SINE MIR -36 226 105 285 325 126 7 chr13 20082829 20082980 -81790189 - L2 LINE L2 -639 2675 2507 622 173 168 35 chr13 20083147 20083320 -81789849 + L2 LINE L2 3117 3312 -1 344 237 178 0 chr13 20083376 20083494 -81789675 - Charlie8 DNA MER1_type -2182 235 97 1924 138 0 4 chr13 20083499 20083775 -81789394 - AluSx SINE Alu -37 275 1 2194 95 0 3 chr13 20084871 20085165 -81788004 + AluY SINE Alu 1 293 -18 4068 165 33 16 chr13 20085312 20086317 -81786852 - L1MB2 LINE L1 -52 6119 5096 459 340 81 20 chr13 20086536 20086833 -81786336 + L2 LINE L2 2998 3312 -1 285 29 0 0 chr13 20086969 20087003 -81786166 + (TG)n Simple_repeat Simple_repeat 2 35 0 34 42 0 0 chr13 20087193 20087241 -81785928 + AT_rich Low_complexity Low_complexity 1 48 0 3239 89 5 5 chr13 20087884 20088333 -81784836 - L1PA10 LINE L1 -3 6165 5717 1971 130 33 10 chr13 20088395 20088696 -81784473 + AluJb SINE Alu 1 308 -4 1496 106 23 26 chr13 20088701 20088966 -81784203 + L1MA8 LINE L1 6022 6285 -6 2458 66 0 13 chr13 20089029 20089334 -81783835 - AluY SINE Alu -10 301 1 666 169 184 0 chr13 20089392 20089528 -81783641 - AluSp SINE Alu -16 297 137 183 300 46 62 chr13 20089696 20089826 -81783343 - MIR SINE MIR -53 209 82 2289 109 0 3 chr13 20090310 20090621 -81782548 - AluSx SINE Alu -2 310 1 209 229 0 21 chr13 20090842 20090890 -81782279 + (TAG)n Simple_repeat Simple_repeat 2 48 0 1824 159 0 28 chr13 20090943 20091264 -81781905 + AluJb SINE Alu 1 312 0 1663 181 41 9 chr13 20091303 20091646 -81781523 + MLT1A1 LTR MaLR 2 355 -10 4557 190 33 15 chr13 20091654 20092972 -81780197 - L1MD1 LINE L1 -43 6593 5243 714 221 14 21 chr13 20092975 20093120 -81780049 + AluJo SINE Alu 3 146 -166 3734 215 46 25 chr13 20093124 20093644 -81779525 - L1MD1 LINE L1 -1308 5232 4724 2154 106 38 0 chr13 20093644 20093937 -81779232 - AluSp SINE Alu -9 304 1 3734 215 46 25 chr13 20093937 20094659 -81778510 - L1MD1 LINE L1 -1816 4724 3919 2158 177 85 20 chr13 20094655 20095114 -81778055 - L1MD1 LINE L1 -3584 2956 2528 * 1758 174 7 23 chr13 20095114 20095424 -81777745 - AluJo SINE Alu -7 305 1 2158 177 85 20 chr13 20095424 20095832 -81777337 - L1MD1 LINE L1 -4012 2528 2030 3829 215 115 45 chr13 20097587 20099190 -81773979 - L1MD1 LINE L1 -4495 2045 184 293 0 75 19 chr13 20099190 20099243 -81773926 + (CAAA)n Simple_repeat Simple_repeat 4 59 0 3829 215 115 45 chr13 20099243 20099437 -81773732 - L1MD1 LINE L1 -6356 184 5 2282 108 20 0 chr13 20099585 20099891 -81773278 + AluSx SINE Alu 1 312 0 2361 110 3 0 chr13 20100486 20100796 -81772373 - AluSq SINE Alu -2 311 1 737 118 178 0 chr13 20101325 20101460 -81771709 + MSTA LTR MaLR 1 159 -269 1858 155 28 0 chr13 20101655 20101945 -81771224 - AluSx SINE Alu -14 298 1 1855 151 0 3 chr13 20102109 20102418 -81770751 + AluSx SINE Alu 1 308 0 280 290 60 0 chr13 20102850 20102950 -81770219 + L3 LINE CR1 645 750 -827 2271 77 0 20 chr13 20103224 20103545 -81769624 + AluY SINE Alu 1 311 0 538 290 172 7 chr13 20103559 20103838 -81769331 + L3 LINE CR1 1209 1533 -44 660 246 168 0 chr13 20103840 20104031 -81769138 + MER58A DNA MER1_type 2 224 0 435 145 297 7 chr13 20104847 20104883 -81768286 + MER3 DNA MER1_type 15 39 -170 640 160 101 25 chr13 20104883 20105002 -81768167 + FLAM_A SINE Alu 1 128 -5 435 145 297 7 chr13 20105002 20105103 -81768066 + MER3 DNA MER1_type 39 192 -17 1024 191 31 12 chr13 20105571 20105828 -81767341 - L1MA7 LINE L1 -4 6287 6026 212 377 9 44 chr13 20105988 20106102 -81767067 + MIR SINE MIR 40 149 -59 314 276 60 17 chr13 20106197 20106313 -81766856 + L2 LINE L2 3193 3313 0 1543 156 48 0 chr13 20106317 20106606 -81766563 - MER58B DNA MER1_type 0 341 39 5494 58 46 3 chr13 20106610 20107351 -81765818 - LTR17 LTR ERV1 -7 773 1 506 122 12 0 chr13 20107432 20107514 -81765655 + L1PA16 LINE L1 6075 6157 -9 234 325 53 34 chr13 20107839 20108048 -81765121 + L2 LINE L2 1183 1395 -1919 648 190 0 36 chr13 20108219 20108356 -81764813 - FLAM_A SINE Alu -1 132 1 608 368 85 29 chr13 20108681 20109537 -81763632 + L2 LINE L2 1777 2680 -634 616 279 40 40 chr13 20109614 20109844 -81763325 - MIR SINE MIR 0 262 30 207 0 0 0 chr13 20112006 20112029 -81761140 + (CAA)n Simple_repeat Simple_repeat 2 24 0 291 343 54 24 chr13 20113060 20113226 -81759943 + MER5B DNA MER1_type 3 173 -5 390 284 21 0 chr13 20113889 20113905 -81759264 - L1MA10 LINE L1 -1 6333 6318 2765 204 25 17 chr13 20113905 20114596 -81758573 - L1ME1 LINE L1 -11 6155 5460 8874 169 41 12 chr13 20114718 20116339 -81756830 + L1PA16 LINE L1 2 1813 -5036 180 0 0 0 chr13 20116339 20116359 -81756810 + (TA)n Simple_repeat Simple_repeat 2 21 0 8874 169 41 12 chr13 20116359 20117126 -81756043 + L1PA16 LINE L1 1813 2556 -4293 1060 201 19 8 chr13 20117129 20117397 -81755772 + L1PA16 LINE L1 5652 5922 -927 434 39 0 0 chr13 20117508 20117560 -81755609 + AluSp/q SINE Alu 231 282 -31 5184 121 20 13 chr13 20117560 20118412 -81754757 + L1PA16 LINE L1 5995 6860 -9 3476 185 26 49 chr13 20118419 20119332 -81753837 + L1MB7 LINE L1 5293 6184 0 1270 145 47 0 chr13 20119338 20119572 -81753597 + L1MA4A LINE L1 6059 6303 0 204 299 104 0 chr13 20119998 20120075 -81753094 + L2 LINE L2 3225 3309 -4 3078 128 16 6 chr13 20122937 20123443 -81749726 - L1PA13 LINE L1 -4 6159 5649 4359 176 39 25 chr13 20123451 20124162 -81749007 - L1PA13 LINE L1 -1510 4636 3905 2046 134 0 3 chr13 20124162 20124475 -81748694 - AluSx SINE Alu 0 312 1 4359 176 39 25 chr13 20124475 20124730 -81748439 - L1PA13 LINE L1 -2241 3905 3655 1166 179 5 0 chr13 20124896 20125103 -81748066 - MER63D DNA MER1_type -179 882 675 1094 180 213 19 chr13 20125115 20125477 -81747692 - MER63D DNA MER1_type -626 435 4 2782 171 28 7 chr13 20125560 20126349 -81746820 + L1MB7 LINE L1 5027 5828 -356 234 288 0 0 chr13 20126350 20126416 -81746753 - L2 LINE L2 -1208 2106 2041 193 326 113 28 chr13 20126417 20126558 -81746611 - MIR SINE MIR -77 185 33 476 193 128 100 chr13 20127484 20127936 -81745233 + L1MC5 LINE L1 7274 7738 -223 226 199 178 16 chr13 20127956 20128076 -81745093 - L2 LINE L2 -342 2930 2794 2162 102 20 0 chr13 20128262 20128555 -81744614 + AluSq SINE Alu 1 299 -14 458 307 130 38 chr13 20128710 20128971 -81744198 + L2 LINE L2 2852 3168 -145 1914 223 116 2 chr13 20128971 20129487 -81743682 + MER90 LTR ERV1 1 575 0 458 307 130 38 chr13 20129487 20129648 -81743521 + L2 LINE L2 3168 3313 0 1623 153 139 44 chr13 20129683 20130050 -81743119 + MER93a LTR ERV1 1 402 0 182 250 71 0 chr13 20130487 20130543 -81742626 - MER5A DNA MER1_type 0 189 130 5237 182 138 38 chr13 20130903 20132306 -81740863 - MER52A LTR ERV1 0 1755 212 390 214 98 0 chr13 20133307 20133419 -81739750 - MER67D LTR ERV1 -8 506 384 4840 170 15 4 chr13 20133454 20134438 -81738731 - L1MB4 LINE L1 -1 6179 5184 1170 176 72 71 chr13 20134487 20134852 -81738317 - MER67C LTR ERV1 -243 271 15 2200 105 0 10 chr13 20134896 20135183 -81737986 + AluSx SINE Alu 1 286 -26 483 33 0 0 chr13 20135183 20135244 -81737925 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1075 147 0 0 chr13 20135250 20135413 -81737756 + AluSq SINE Alu 134 296 -17 444 149 56 28 chr13 20136284 20136391 -81736778 - L1MC5 LINE L1 -573 7388 7279 633 216 46 100 chr13 20136505 20136623 -81736546 - L1MC5 LINE L1 -733 7228 7105 2188 124 7 0 chr13 20136623 20136930 -81736239 + AluSq SINE Alu 1 309 -4 633 216 46 100 chr13 20136930 20137220 -81735949 - L1MC5 LINE L1 -856 7105 6864 477 34 0 0 chr13 20137224 20137283 -81735886 + (CA)n Simple_repeat Simple_repeat 2 60 0 227 211 40 138 chr13 20137358 20137510 -81735659 - MLT1I LTR MaLR -272 137 1 1883 169 24 0 chr13 20137515 20137847 -81735322 + MLT2C1 LTR ERVL 1 340 -57 686 204 62 84 chr13 20137853 20138043 -81735126 + L1MB5 LINE L1 4129 4313 -1833 1462 197 124 14 chr13 20138043 20138398 -81734771 + MSTD LTR MaLR 1 394 -2 686 204 62 84 chr13 20138398 20138481 -81734688 + L1MB5 LINE L1 4313 4396 -1750 508 279 31 25 chr13 20138482 20138643 -81734526 + MLT1A2 LTR MaLR 1 162 -212 965 234 10 5 chr13 20138705 20138906 -81734263 + MLT1A2 LTR MaLR 173 374 0 3610 236 66 66 chr13 20138906 20139683 -81733486 + MLT1A2-int LTR MaLR 1 777 -594 2236 121 0 0 chr13 20139683 20139980 -81733189 - AluSg SINE Alu -13 297 1 3610 236 66 66 chr13 20139980 20140314 -81732855 + MLT1A2-int LTR MaLR 777 1115 -256 180 0 0 0 chr13 20140314 20140334 -81732835 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3610 236 66 66 chr13 20140334 20140586 -81732583 + MLT1A2-int LTR MaLR 1114 1365 -6 522 178 99 20 chr13 20140592 20140744 -81732425 + MLT1A2 LTR MaLR 8 171 -219 3089 181 55 15 chr13 20140772 20141695 -81731474 + L1MB5 LINE L1 5086 6046 -128 227 182 91 0 chr13 20141698 20141753 -81731416 - L1MB5 LINE L1 -68 6106 6047 2123 120 7 3 chr13 20141816 20142124 -81731045 + AluSx SINE Alu 1 309 -3 200 241 126 46 chr13 20143558 20143645 -81729524 + MIR SINE MIR 77 170 -92 1773 103 57 21 chr13 20143984 20144266 -81728903 - AluSq SINE Alu -21 292 1 2201 116 0 0 chr13 20144269 20144571 -81728598 - AluSx SINE Alu -10 302 1 586 144 14 65 chr13 20144571 20144710 -81728459 - AluJb SINE Alu -180 132 1 21 0 0 0 chr13 20144720 20144741 -81728428 + AT_rich Low_complexity Low_complexity 1 21 0 1720 162 26 23 chr13 20144938 20145246 -81727923 - AluJb SINE Alu -3 309 1 418 234 90 30 chr13 20145288 20145455 -81727714 + MER5B DNA MER1_type 2 178 0 18203 31 2 1 chr13 20145484 20148458 -81724711 - L1PA4 LINE L1 0 6155 3176 198 0 0 0 chr13 20148511 20148533 -81724636 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 6712 69 25 11 chr13 20148560 20150239 -81722930 - L1PA8 LINE L1 0 6172 4482 646 161 89 16 chr13 20151901 20152025 -81721144 - FLAM_C SINE Alu 0 133 1 2220 122 3 0 chr13 20152494 20152806 -81720363 - AluSq SINE Alu 0 313 1 386 239 63 25 chr13 20152978 20153137 -81720032 + MER104 DNA Tc2 4 168 -12 1163 207 80 19 chr13 20153352 20153666 -81719503 + MER2 DNA MER2_type 7 339 -6 2012 121 14 3 chr13 20153691 20153980 -81719189 - AluSx SINE Alu -20 292 1 723 173 5 70 chr13 20153980 20154100 -81719069 + MER63D DNA MER1_type 889 995 -67 2008 134 3 0 chr13 20154100 20154407 -81718762 - AluSx SINE Alu 0 308 1 723 173 5 70 chr13 20154407 20154470 -81718699 + MER63D DNA MER1_type 995 1061 -1 196 326 103 57 chr13 20154721 20154896 -81718273 - MER5A DNA MER1_type 0 189 7 302 115 19 0 chr13 20155124 20155176 -81717993 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 191 356 0 0 chr13 20155201 20155246 -81717923 - L2 LINE L2 -86 3186 3142 1325 171 103 40 chr13 20155487 20155808 -81717361 - MER2 DNA MER2_type -1 343 3 2317 107 0 0 chr13 20155948 20156248 -81716921 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 20156356 20156381 -81716788 + AT_rich Low_complexity Low_complexity 1 25 0 223 342 99 99 chr13 20156857 20157100 -81716069 + MIR SINE MIR 20 262 0 187 322 81 35 chr13 20157261 20157348 -81715821 - L2 LINE L2 -154 3118 3028 27 0 0 0 chr13 20157904 20157931 -81715238 + AT_rich Low_complexity Low_complexity 1 27 0 2139 107 0 3 chr13 20158802 20159091 -81714078 + AluSq SINE Alu 12 299 -14 256 361 10 0 chr13 20159122 20159219 -81713950 + L3b LINE CR1 1375 1472 -111 2181 95 3 10 chr13 20159283 20159577 -81713592 - AluSx SINE Alu -20 292 1 442 234 58 23 chr13 20159749 20159920 -81713249 + MER104 DNA MER2_type 4 180 0 354 216 43 58 chr13 20162222 20162361 -81710808 - L1MA10 LINE L1 -2 6332 6196 670 244 52 14 chr13 20162413 20162626 -81710543 + MER58A DNA MER1_type 3 223 -1 21 0 0 0 chr13 20164708 20164729 -81708440 + AT_rich Low_complexity Low_complexity 1 21 0 401 136 0 0 chr13 20165111 20165170 -81707999 + AluJ/FRAM SINE Alu 229 287 -25 1552 303 137 28 chr13 20165454 20165757 -81707412 + L2 LINE L2 1355 1623 -1691 902 189 146 0 chr13 20165757 20165963 -81707206 + MER46A DNA MER2_type 1 236 0 1552 303 137 28 chr13 20165963 20166628 -81706541 + L2 LINE L2 1623 2429 -885 687 268 195 49 chr13 20166712 20167138 -81706031 + L2 LINE L2 2824 3311 -2 2312 90 7 3 chr13 20167290 20167591 -81705578 - AluY SINE Alu -9 302 1 8034 114 46 10 chr13 20168883 20170138 -81703031 - HSMAR2 DNA Mariner -1 1301 1 581 258 67 21 chr13 20170359 20170599 -81702570 + L1MC5 LINE L1 6957 7207 -754 324 254 8 31 chr13 20170767 20170897 -81702272 + L1MC5 LINE L1 7292 7418 -543 443 259 54 9 chr13 20171204 20171316 -81701853 + L2 LINE L2 3197 3313 0 737 192 0 0 chr13 20171358 20171483 -81701686 - Tigger1 DNA MER2_type -1 2417 2293 2144 153 88 10 chr13 20171484 20171611 -81701558 - Tigger2 DNA MER2_type -1 2717 2601 1800 174 7 7 chr13 20171611 20171910 -81701259 - AluJb SINE Alu -12 300 2 2144 153 88 10 chr13 20171910 20172200 -81700969 - Tigger2 DNA MER2_type -117 2601 2267 393 135 0 95 chr13 20172186 20172204 -81700965 - Tigger2 DNA MER2_type -2651 67 49 * 2218 106 10 0 chr13 20172204 20172496 -81700673 + AluSc SINE Alu 1 295 -14 393 135 0 95 chr13 20172496 20172551 -81700618 - Tigger2 DNA MER2_type -2669 49 1 * 12621 133 63 17 chr13 20172551 20172994 -81700175 - Tigger1 DNA MER2_type -124 2294 1873 2035 115 0 39 chr13 20172994 20173299 -81699870 + AluSg SINE Alu 2 294 -16 12621 133 63 17 chr13 20173299 20175026 -81698143 - Tigger1 DNA MER2_type -545 1873 24 652 202 0 0 chr13 20175486 20175600 -81697569 - FLAM_C SINE Alu -24 119 6 33 25 0 0 chr13 20175650 20175690 -81697479 + AT_rich Low_complexity Low_complexity 1 40 0 2372 190 16 5 chr13 20176042 20176489 -81696680 - L1MCa LINE L1 -5954 472 21 326 321 38 72 chr13 20176493 20176839 -81696330 + L2 LINE L2 2967 3300 -13 24 67 0 0 chr13 20177646 20177691 -81695478 + AT_rich Low_complexity Low_complexity 1 45 0 468 193 182 6 chr13 20178103 20178257 -81694912 - MER5A DNA MER1_type -1 188 4 444 331 29 29 chr13 20178255 20178430 -81694739 + MER5A DNA MER1_type 1 175 -14 * 2207 94 23 16 chr13 20179268 20179577 -81693592 - AluSq SINE Alu -2 311 1 21 0 0 0 chr13 20179861 20179882 -81693287 + AT_rich Low_complexity Low_complexity 1 21 0 456 290 79 8 chr13 20179991 20180193 -81692976 + MIR SINE MIR 13 225 -37 677 124 39 8 chr13 20181566 20181695 -81691474 - L1PA16 LINE L1 0 6166 6034 326 226 107 12 chr13 20182753 20182837 -81690332 + MIR3 SINE MIR 111 202 -6 2259 108 0 0 chr13 20183582 20183879 -81689290 + AluSx SINE Alu 1 297 -15 21 71 0 0 chr13 20184279 20184321 -81688848 + AT_rich Low_complexity Low_complexity 1 42 0 188 33 0 33 chr13 20185828 20185858 -81687311 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 914 232 59 14 chr13 20187717 20187937 -81685232 + MIR SINE MIR 9 238 -24 370 213 287 0 chr13 20188718 20188840 -81684329 + MER58C DNA MER1_type 57 213 -2 1742 176 28 0 chr13 20189867 20190151 -81683018 + AluJb SINE Alu 1 292 -20 32 0 0 0 chr13 20190673 20190705 -81682464 + AT_rich Low_complexity Low_complexity 1 32 0 285 287 85 0 chr13 20191296 20191390 -81681779 + L2 LINE L2 3208 3309 -4 281 275 136 34 chr13 20191755 20191891 -81681278 - MIR SINE MIR -61 147 8 407 205 36 0 chr13 20192053 20192136 -81681033 - MER5B DNA MER1_type -1 177 92 2110 98 14 20 chr13 20192370 20192666 -81680503 - AluSc SINE Alu -15 294 1 4176 162 56 48 chr13 20192666 20193791 -81679378 - L1MB2 LINE L1 -32 6139 5002 1945 234 173 4 chr13 20194023 20194740 -81678429 - L1MB2 LINE L1 -3061 3085 2248 2809 221 59 59 chr13 20195137 20196206 -81676963 - L1M4 LINE L1 -964 5182 4114 271 258 58 67 chr13 20197549 20197669 -81675500 + MIR3 SINE MIR 65 183 -25 331 148 0 19 chr13 20199830 20199884 -81673285 + MER5A DNA MER1_type 137 189 0 1415 97 5 5 chr13 20200220 20200405 -81672764 - AluSx SINE Alu -127 185 1 433 215 50 41 chr13 20201073 20201194 -81671975 - MIR SINE MIR -30 232 111 2198 107 10 3 chr13 20202993 20203293 -81669876 - AluSc SINE Alu -7 302 1 1579 194 17 7 chr13 20203751 20204044 -81669125 - AluJo SINE Alu -16 296 1 187 267 50 33 chr13 20204560 20204620 -81668549 - MER5B DNA MER1_type -18 160 100 534 248 55 76 chr13 20204684 20204706 -81668463 + MIR SINE MIR 12 33 -229 2252 97 0 0 chr13 20204706 20205004 -81668165 + AluSx SINE Alu 1 298 -14 534 248 55 76 chr13 20205004 20205219 -81667950 + MIR SINE MIR 33 244 -18 423 284 194 27 chr13 20205286 20205508 -81667661 + MIR SINE MIR 4 262 0 1161 212 90 34 chr13 20206983 20207361 -81665808 + Charlie4a DNA MER1_type 63 461 -47 2241 65 4 0 chr13 20207471 20207750 -81665419 - AluSx SINE Alu -32 280 1 2602 37 0 0 chr13 20208514 20208814 -81664355 - AluY SINE Alu -11 300 1 273 197 141 0 chr13 20208949 20209020 -81664149 + MER53 DNA DNA 1 81 -108 496 177 108 15 chr13 20209112 20209242 -81663927 + L1MB3 LINE L1 6042 6183 0 272 171 66 26 chr13 20209312 20209388 -81663781 - MER53 DNA DNA -110 79 1 329 296 141 41 chr13 20209498 20209718 -81663451 - L1M2 LINE L1 -5930 919 678 216 0 0 0 chr13 20210650 20210674 -81662495 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 267 311 107 45 chr13 20210798 20210975 -81662194 - MIR SINE MIR -1 261 74 849 235 76 45 chr13 20211080 20211389 -81661780 - L1MC5 LINE L1 -170 7791 7460 2278 87 24 0 chr13 20211389 20211687 -81661482 - AluSq SINE Alu -8 305 1 849 235 76 45 chr13 20211687 20211862 -81661307 - L1MC5 LINE L1 -501 7460 7292 511 245 53 32 chr13 20212008 20212196 -81660973 - L1MC5 LINE L1 -728 7233 7042 259 249 0 12 chr13 20212325 20212405 -81660764 - L1MC4a LINE L1 -918 6890 6830 389 270 159 26 chr13 20214680 20214869 -81658300 - MIR SINE MIR -17 245 32 270 270 14 0 chr13 20216729 20216803 -81656366 - MLT1L LTR MaLR -50 565 491 798 205 0 48 chr13 20216946 20217112 -81656057 + FRAM SINE Alu 1 158 -18 516 201 190 17 chr13 20219994 20220168 -81653001 - MLT1J LTR MaLR -74 437 234 523 309 34 0 chr13 20220199 20220374 -81652795 - MIR SINE MIR -79 183 3 2065 176 55 2 chr13 20220750 20221148 -81652021 - MSTA LTR MaLR -9 419 1 307 228 53 35 chr13 20221160 20221274 -81651895 - L2 LINE L2 -869 2445 2330 1172 167 5 31 chr13 20221637 20221829 -81651340 - AluJo SINE Alu -125 187 1 1795 166 0 7 chr13 20224085 20224368 -81648801 + AluJo SINE Alu 18 298 -14 1252 140 6 0 chr13 20224505 20224684 -81648485 + AluSg/x SINE Alu 123 302 -10 2152 104 7 3 chr13 20224691 20224979 -81648190 + AluSg SINE Alu 7 295 -15 2165 127 7 0 chr13 20225057 20225356 -81647813 - AluSx SINE Alu -6 306 6 616 189 161 21 chr13 20225358 20225501 -81647668 - AluJb SINE Alu -14 298 136 2218 115 0 0 chr13 20226109 20226405 -81646764 - AluSx SINE Alu -16 296 1 2266 123 10 0 chr13 20226415 20226724 -81646445 - AluSx SINE Alu 0 312 1 24 0 0 0 chr13 20226773 20226797 -81646372 + AT_rich Low_complexity Low_complexity 1 24 0 358 117 0 0 chr13 20226879 20226939 -81646230 - AluJo SINE Alu -2 300 241 1167 146 0 0 chr13 20226940 20227111 -81646058 - AluJo SINE Alu -120 192 22 259 291 124 8 chr13 20227116 20227350 -81645819 + L1ME4a LINE L1 5558 5818 -303 1176 203 137 71 chr13 20227409 20227649 -81645520 + L1MC5 LINE L1 7308 7531 -430 2040 127 0 7 chr13 20227649 20227940 -81645229 - AluSc SINE Alu -20 289 1 1176 203 137 71 chr13 20227940 20228262 -81644907 + L1MC5 LINE L1 7531 7907 -54 314 252 30 82 chr13 20228376 20228511 -81644658 + L1ME4a LINE L1 5966 6093 -28 478 232 268 14 chr13 20228663 20228939 -81644230 - L1MC4a LINE L1 -1875 5933 5588 230 248 71 28 chr13 20228992 20229133 -81644036 - L1MC4a LINE L1 -2375 5433 5287 711 282 102 98 chr13 20229137 20229859 -81643310 - L1MC4a LINE L1 -862 5284 4555 2454 67 0 0 chr13 20229859 20230158 -81643011 - AluY SINE Alu -12 299 1 711 282 102 98 chr13 20230158 20230512 -81642657 - L1MC4a LINE L1 -1591 4555 4204 21 57 0 0 chr13 20230769 20230804 -81642365 + AT_rich Low_complexity Low_complexity 1 35 0 2094 124 3 10 chr13 20231198 20231504 -81641665 - AluSx SINE Alu -8 304 1 2239 108 10 0 chr13 20231932 20232237 -81640932 - AluSx SINE Alu -4 308 1 2101 99 42 0 chr13 20232251 20232534 -81640635 - AluSg SINE Alu -15 295 1 222 152 30 30 chr13 20232767 20232833 -81640336 + (TA)n Simple_repeat Simple_repeat 1 66 0 2158 99 0 3 chr13 20233031 20233314 -81639855 + AluSx SINE Alu 1 282 -30 242 28 0 28 chr13 20233317 20233353 -81639816 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr13 20233434 20233458 -81639711 + AT_rich Low_complexity Low_complexity 1 24 0 658 238 79 46 chr13 20235393 20235615 -81637554 - MIR SINE MIR -10 252 15 2286 119 0 0 chr13 20235615 20235925 -81637244 - AluSx SINE Alu -2 310 1 913 205 0 0 chr13 20236191 20236347 -81636822 + FRAM SINE Alu 1 155 -21 403 306 82 39 chr13 20237771 20237931 -81635238 + L2 LINE L2 1711 1890 -1424 2059 97 68 0 chr13 20237931 20238210 -81634959 - AluSq SINE Alu -15 298 1 403 306 82 39 chr13 20238210 20238330 -81634839 + L2 LINE L2 1890 2003 -1311 213 265 204 8 chr13 20238371 20238503 -81634666 + L2 LINE L2 2447 2604 -710 435 302 56 73 chr13 20238685 20238973 -81634196 + L2 LINE L2 3031 3313 0 929 163 153 42 chr13 20239538 20239625 -81633544 - MER33 DNA MER1_type -2261 324 248 1531 159 28 42 chr13 20239625 20239914 -81633255 + AluJo SINE Alu 11 295 -17 929 163 153 42 chr13 20239914 20240114 -81633055 - MER33 DNA MER1_type -2337 248 5 605 190 9 9 chr13 20240235 20240351 -81632818 + AluJb SINE Alu 1 116 -196 2287 92 0 20 chr13 20240778 20241073 -81632096 + AluSx SINE Alu 1 289 -23 25 31 0 0 chr13 20241129 20241161 -81632008 + AT_rich Low_complexity Low_complexity 1 32 0 1084 204 113 31 chr13 20241240 20241439 -81631730 + MER2 DNA MER2_type 1 237 -108 1666 157 51 3 chr13 20241439 20241732 -81631437 - AluJb SINE Alu -5 307 1 1084 204 113 31 chr13 20241732 20241850 -81631319 + MER2 DNA MER2_type 237 344 -1 1370 184 0 13 chr13 20241921 20242149 -81631020 + AluSq SINE Alu 1 225 -88 911 155 7 7 chr13 20242189 20242337 -81630832 + FRAM SINE Alu 1 148 -18 1094 250 218 32 chr13 20242391 20243383 -81629786 - HAL1 LINE L1 0 2507 1332 2201 134 74 42 chr13 20243389 20243860 -81629309 - L1MA7 LINE L1 -10 6281 5796 21 0 0 0 chr13 20243860 20243881 -81629288 + AT_rich Low_complexity Low_complexity 1 21 0 2310 76 0 9 chr13 20243884 20244213 -81628956 - LTR17 LTR ERV1 -454 326 1 2140 60 28 0 chr13 20244213 20244497 -81628672 - HERV17 LTR ERV1 0 8626 8335 295 0 0 0 chr13 20244490 20244526 -81628643 - HERV17 LTR ERV1 -1081 7545 7510 * 12246 51 1 10 chr13 20244522 20246103 -81627066 - HERV17 LTR ERV1 -1479 7147 5582 744 71 0 18 chr13 20246103 20246216 -81626953 - LTR17 LTR ERV1 -414 366 256 2913 150 34 14 chr13 20246217 20247129 -81626040 - L1MA7 LINE L1 -478 5813 4890 826 286 175 18 chr13 20247111 20247764 -81625405 - HAL1 LINE L1 -1175 1332 578 * 921 174 27 0 chr13 20248375 20248524 -81624645 + AluJb SINE Alu 1 153 -159 332 167 306 9 chr13 20248524 20248632 -81624537 + HAL1 LINE L1 1088 1227 -1280 777 185 0 7 chr13 20248633 20248768 -81624401 + AluJb SINE Alu 156 289 -23 1939 127 10 7 chr13 20250780 20251072 -81622097 + AluSq SINE Alu 1 293 -20 202 250 0 0 chr13 20251740 20251776 -81621393 + MIR SINE MIR 115 150 -112 1849 147 13 26 chr13 20251980 20252287 -81620882 + AluJb SINE Alu 1 303 -9 633 192 0 0 chr13 20253439 20253543 -81619626 + FRAM SINE Alu 41 144 -32 24 0 0 0 chr13 20253547 20253571 -81619598 + AT_rich Low_complexity Low_complexity 1 24 0 525 256 298 5 chr13 20253696 20253887 -81619282 - MIR SINE MIR -11 251 5 235 268 106 73 chr13 20254026 20254064 -81619105 + L2 LINE L2 3186 3221 -92 2353 82 7 0 chr13 20254064 20254358 -81618811 + AluSp SINE Alu 2 297 -16 235 268 106 73 chr13 20254358 20254442 -81618727 + L2 LINE L2 3221 3312 -1 2402 88 0 3 chr13 20254902 20255208 -81617961 - AluSq SINE Alu -8 305 1 346 285 161 0 chr13 20255225 20255362 -81617807 - MIR SINE MIR -27 235 77 14156 129 66 33 chr13 20255593 20255935 -81617234 + Tigger2 DNA MER2_type 3 332 -2386 2322 86 17 0 chr13 20255935 20256225 -81616944 + AluSq SINE Alu 1 295 -18 14156 129 66 33 chr13 20256225 20256612 -81616557 + Tigger2 DNA MER2_type 332 705 -2013 2041 124 21 0 chr13 20256612 20256903 -81616266 + AluSx SINE Alu 1 297 -15 14156 129 66 33 chr13 20256903 20257864 -81615305 + Tigger2 DNA MER2_type 705 1633 -1085 1934 133 3 17 chr13 20257864 20258165 -81615004 + AluJo SINE Alu 5 301 -11 14156 129 66 33 chr13 20258165 20259101 -81614068 + Tigger2 DNA MER2_type 1633 2718 0 1802 153 66 66 chr13 20259160 20259586 -81613583 - MSTA LTR MaLR -2 426 1 2028 116 17 3 chr13 20260430 20260723 -81612446 - AluSx SINE Alu -15 297 1 21 0 0 0 chr13 20260924 20260945 -81612224 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr13 20261223 20261266 -81611903 + AT_rich Low_complexity Low_complexity 1 43 0 1851 194 25 0 chr13 20261413 20261769 -81611400 - MLT1A1 LTR MaLR 0 365 1 3481 64 14 0 chr13 20261911 20262349 -81610820 - MLT2A1 LTR ERVL 0 444 1 660 328 45 47 chr13 20262899 20263323 -81609846 - MLT1K LTR MaLR -3 585 163 1230 130 6 0 chr13 20264093 20264270 -81608899 - AluSg/x SINE Alu -11 301 124 1624 200 20 8 chr13 20264707 20265062 -81608107 + MLT2D LTR ERVL 1 359 -55 543 53 0 0 chr13 20265064 20265139 -81608030 + (TC)n Simple_repeat Simple_repeat 2 76 0 * 636 14 0 0 chr13 20265138 20265211 -81607958 + (TA)n Simple_repeat Simple_repeat 2 74 0 905 230 30 26 chr13 20265357 20265566 -81607603 + MLT2D LTR ERVL 149 361 -53 543 53 0 0 chr13 20265566 20265641 -81607528 + (TC)n Simple_repeat Simple_repeat 2 76 0 905 230 30 26 chr13 20265641 20265696 -81607473 + MLT2D LTR ERVL 361 414 0 3704 112 11 20 chr13 20265871 20266424 -81606745 + LTR14 LTR ERVK 1 548 0 600 243 113 108 chr13 20267190 20267225 -81605944 + MLT1F1 LTR MaLR 15 48 -494 1784 131 91 0 chr13 20267225 20267499 -81605670 - AluSx SINE Alu -13 299 1 600 243 113 108 chr13 20267499 20267924 -81605245 + MLT1F1 LTR MaLR 48 477 -65 235 199 211 70 chr13 20268233 20268389 -81604780 + MIR SINE MIR 85 262 0 245 337 77 36 chr13 20268444 20268640 -81604529 + L2 LINE L2 1989 2192 -1122 229 287 122 43 chr13 20269798 20269913 -81603256 + L2 LINE L2 2933 3056 -257 483 202 57 16 chr13 20270166 20270290 -81602879 - MER94 DNA DNA -4 130 2 1719 167 53 21 chr13 20270495 20270873 -81602296 - MLT1B LTR MaLR 0 390 1 2177 120 0 0 chr13 20271007 20271298 -81601871 - AluSx SINE Alu -21 291 1 23 33 0 0 chr13 20271370 20271400 -81601769 + AT_rich Low_complexity Low_complexity 1 30 0 1718 129 12 74 chr13 20271413 20271771 -81601398 + AluSx SINE Alu 1 312 0 481 295 155 14 chr13 20272034 20272241 -81600928 + MER115 DNA AcHobo 455 690 -3 2138 125 0 0 chr13 20272241 20272536 -81600633 - AluSx SINE Alu -17 295 1 339 282 204 10 chr13 20272549 20272755 -81600414 - MIR SINE MIR -14 248 3 817 268 338 6 chr13 20274007 20274481 -81598688 + L2 LINE L2 2319 2949 -365 260 105 0 0 chr13 20274529 20274567 -81598602 - MER92C LTR ERV1 -26 528 491 538 215 70 7 chr13 20274633 20274785 -81598384 - MER92B LTR ERV1 -389 165 5 350 182 114 0 chr13 20275241 20275329 -81597840 - Charlie1 DNA MER1_type -2336 425 328 492 105 324 0 chr13 20275345 20275450 -81597719 - MER21B LTR ERV1 -396 467 329 703 270 102 33 chr13 20275450 20275724 -81597445 + L2 LINE L2 3020 3312 -1 31 68 0 0 chr13 20276942 20277001 -81596168 + AT_rich Low_complexity Low_complexity 1 59 0 2075 113 7 7 chr13 20277193 20277485 -81595684 - AluSx SINE Alu -18 294 3 212 269 127 49 chr13 20281398 20281547 -81591622 - MIR SINE MIR -61 147 11 482 290 19 13 chr13 20282331 20282486 -81590683 - MLT1I LTR MaLR -39 370 215 395 292 36 29 chr13 20282622 20282759 -81590410 - MIR SINE MIR -105 157 20 296 104 21 0 chr13 20283754 20283802 -81589367 - L2 LINE L2 0 3313 3265 294 344 0 10 chr13 20283802 20283898 -81589271 - MIR SINE MIR -156 106 12 240 194 0 48 chr13 20284139 20284201 -81588968 - MER69 DNA AcHobo -5 2521 2463 282 29 0 0 chr13 20284201 20284236 -81588933 + (CAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr13 20286221 20286250 -81586919 + AT_rich Low_complexity Low_complexity 1 29 0 421 268 0 36 chr13 20286250 20286418 -81586751 + L1M4 LINE L1 60 221 -6321 635 318 74 12 chr13 20287216 20287458 -81585711 - MIR SINE MIR 0 262 6 239 185 31 31 chr13 20287613 20287678 -81585491 - L1MC5 LINE L1 -52 7909 7845 860 192 14 0 chr13 20287878 20288024 -81585145 + FRAM SINE Alu 11 158 -18 1614 142 22 41 chr13 20288289 20288605 -81584564 - L1MC1 LINE L1 -1 6332 6023 369 332 164 0 chr13 20289415 20289623 -81583546 + MIR SINE MIR 2 243 -19 422 309 46 7 chr13 20290521 20290673 -81582496 + MIR SINE MIR 48 205 -57 882 273 29 3 chr13 20290942 20291320 -81581849 - LTR16A LTR ERVL -9 441 27 237 235 0 0 chr13 20291355 20291406 -81581763 - L3 LINE CR1 -192 1385 1335 342 258 45 0 chr13 20291504 20291636 -81581533 + (CATATA)n Simple_repeat Simple_repeat 2 139 0 472 272 66 33 chr13 20291724 20291937 -81581232 - L2 LINE L2 -947 2367 2148 391 300 69 6 chr13 20292007 20292167 -81581002 + Charlie8 DNA MER1_type 79 248 -2169 207 0 0 0 chr13 20292260 20292283 -81580886 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2226 41 0 0 chr13 20292283 20292551 -81580618 - L1PA5 LINE L1 -11 6143 5876 2187 93 3 23 chr13 20292670 20292972 -81580197 - AluSq SINE Alu -17 296 1 407 263 91 0 chr13 20293012 20293187 -81579982 - L2 LINE L2 -1404 1910 1720 647 226 0 0 chr13 20294396 20294511 -81578658 - FLAM_A SINE Alu -18 115 1 276 346 96 8 chr13 20294522 20294681 -81578488 - MER5A DNA MER1_type -3 186 6 213 261 0 31 chr13 20295536 20295601 -81577568 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 397 335 115 56 chr13 20295618 20295887 -81577282 - L2 LINE L2 -17 3255 2971 47 53 0 0 chr13 20295954 20296029 -81577140 + AT_rich Low_complexity Low_complexity 1 75 0 1915 229 88 8 chr13 20296073 20296689 -81576480 - L1MC4 LINE L1 -140 7902 7238 475 155 24 11 chr13 20296704 20296826 -81576343 - L1MC4 LINE L1 -763 7074 6884 5314 169 26 8 chr13 20297256 20299304 -81573865 - L1PA16 LINE L1 -9 6157 4077 362 195 133 23 chr13 20299377 20299505 -81573664 - L1ME LINE L1 -422 5699 5558 1799 156 3 3 chr13 20299528 20299816 -81573353 - AluSx SINE Alu -24 288 1 332 241 136 55 chr13 20299834 20300091 -81573078 + L1MC/D LINE L1 4567 4844 -1302 1796 136 0 0 chr13 20300349 20300599 -81572570 + AluJb SINE Alu 14 263 -49 1015 224 211 9 chr13 20300653 20301099 -81572070 + L1MC/D LINE L1 5254 5789 -2019 721 263 14 30 chr13 20301215 20301447 -81571722 - L1MC4a LINE L1 -339 5822 5711 2165 112 7 3 chr13 20301447 20301743 -81571426 + AluSq SINE Alu 3 299 -14 721 263 14 30 chr13 20301743 20301774 -81571395 - L1MC4a LINE L1 -450 5711 5681 342 0 0 0 chr13 20303203 20303241 -81569928 + (CA)n Simple_repeat Simple_repeat 2 39 0 297 51 0 0 chr13 20303241 20303280 -81569889 + (CAT)n Simple_repeat Simple_repeat 1 39 0 360 332 91 53 chr13 20303968 20304422 -81568747 - L2 LINE L2 -5 3267 2795 189 0 0 0 chr13 20304539 20304560 -81568609 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 787 135 5 4 chr13 20304560 20304760 -81568409 - AluJb SINE Alu -33 279 2 234 231 96 39 chr13 20305342 20305446 -81567723 - LTR33A LTR ERVL -359 164 55 1819 191 7 55 chr13 20305634 20306068 -81567101 - MLT2D LTR ERVL -1 413 1 1469 212 140 80 chr13 20306914 20307527 -81565642 + MLT1E1 LTR MaLR 1 650 -4 1064 218 3 70 chr13 20307895 20308179 -81564990 + Tigger7 DNA MER2_type 2 266 -284 467 219 0 0 chr13 20308177 20308273 -81564896 + Tigger7 DNA MER2_type 2389 2484 -3 * 301 78 20 0 chr13 20308378 20308429 -81564740 - AluJo SINE Alu -1 301 250 1095 173 78 5 chr13 20308431 20308622 -81564547 - AluJo SINE Alu -107 205 1 2188 110 0 0 chr13 20308862 20309174 -81563995 - AluSc SINE Alu 0 312 1 323 377 9 9 chr13 20309191 20309297 -81563872 - MER91A DNA MER1_type -56 140 35 987 127 61 0 chr13 20309560 20309725 -81563444 - MER58B DNA MER1_type 0 341 167 207 139 0 0 chr13 20312213 20312249 -81560920 + (T)n Simple_repeat Simple_repeat 1 36 0 804 178 51 13 chr13 20313168 20313325 -81559844 - FRAM SINE Alu -13 163 1 28 0 0 0 chr13 20313911 20313939 -81559230 + AT_rich Low_complexity Low_complexity 1 28 0 1354 232 146 31 chr13 20314061 20314514 -81558655 + MLT1D LTR MaLR 1 505 0 25 65 0 0 chr13 20314560 20314606 -81558563 + AT_rich Low_complexity Low_complexity 1 46 0 33 0 0 0 chr13 20314852 20314885 -81558284 + AT_rich Low_complexity Low_complexity 1 33 0 2044 163 20 45 chr13 20315584 20315984 -81557185 - MLT1B LTR MaLR 0 390 1 6236 43 4 0 chr13 20316290 20317082 -81556087 - L1PA5 LINE L1 -2 6152 5358 1111 289 20 31 chr13 20317098 20317455 -81555714 + LTR16C LTR ERVL 139 491 0 253 383 29 0 chr13 20317456 20317631 -81555538 + HERV16 LTR ERVL 2 181 -4815 1316 374 70 17 chr13 20317690 20318046 -81555123 + THE1C LTR MaLR 1 375 0 255 309 105 42 chr13 20318753 20318944 -81554225 + HERV16 LTR ERVL 783 985 -4011 3835 188 28 12 chr13 20319124 20319942 -81553227 + Tigger6a DNA MER2_type 24 854 -229 408 257 112 50 chr13 20320038 20320279 -81552890 + HERV16 LTR ERVL 1718 1973 -3681 1743 191 2 72 chr13 20320316 20320735 -81552434 + MLT1B LTR MaLR 1 390 0 950 308 104 19 chr13 20320743 20321588 -81551581 + HERV16 LTR ERVL 2043 2964 -2032 927 324 23 13 chr13 20321599 20321991 -81551178 + HERV16 LTR ERVL 3863 4258 -1396 309 188 35 9 chr13 20322083 20322342 -81550827 + AluJo SINE Alu 1 302 0 356 368 35 37 chr13 20322829 20323177 -81549992 + HERV16 LTR ERVL 4974 5320 -444 1309 151 101 22 chr13 20324152 20324216 -81548953 - L1PB4 LINE L1 -7 6149 6091 2766 191 71 41 chr13 20324216 20324922 -81548247 - LTR8A LTR ERV1 0 727 1 1309 151 101 22 chr13 20324922 20325135 -81548034 - L1PB4 LINE L1 -65 6091 5850 3107 120 49 44 chr13 20325466 20326001 -81547168 + MER4D LTR ERV1 1 541 -362 1074 85 0 182 chr13 20326001 20326237 -81546932 - 7SK RNA RNA 0 193 1 3107 120 49 44 chr13 20326237 20326292 -81546877 + MER4D LTR ERV1 541 594 -309 1214 150 101 28 chr13 20326302 20326589 -81546580 + THE1C LTR MaLR 2 309 -66 1553 126 3 86 chr13 20326595 20326897 -81546272 + MER4E LTR ERV1 502 778 -1 2460 88 3 0 chr13 20327226 20327532 -81545637 - AluSx SINE Alu -5 307 1 338 211 172 72 chr13 20327754 20327934 -81545235 - MIR SINE MIR -9 253 56 2370 100 24 19 chr13 20328245 20328614 -81544555 + L1PA13 LINE L1 5790 6160 -3 702 243 35 0 chr13 20328615 20328788 -81544381 + LTR16C LTR ERVL 313 491 0 342 0 0 0 chr13 20329688 20329726 -81543443 + (CA)n Simple_repeat Simple_repeat 1 38 0 254 26 53 0 chr13 20329873 20329911 -81543258 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 15009 28 2 0 chr13 20330455 20333020 -81540149 - L1PA2 LINE L1 0 6155 3589 1887 77 0 0 chr13 20333180 20333428 -81539741 - L1PA7 LINE L1 -5 6149 5902 1286 99 80 0 chr13 20333461 20333662 -81539507 + MER30 DNA MER1_type 14 230 0 523 296 38 23 chr13 20334559 20334821 -81538348 + HAL1b LINE L1 360 1666 -734 21 57 0 0 chr13 20335102 20335137 -81538032 + AT_rich Low_complexity Low_complexity 1 35 0 651 148 8 8 chr13 20335174 20335296 -81537873 + L1M3 LINE L1 5470 5591 -743 6637 256 19 23 chr13 20335396 20337770 -81535399 - L1P LINE L1 -2075 4071 1708 616 154 27 0 chr13 20337788 20337898 -81535271 - L1MB3 LINE L1 -237 5946 5834 25537 40 39 2 chr13 20337999 20341373 -81531796 - L1P LINE L1 -2646 3500 3 201 239 0 42 chr13 20341377 20341448 -81531721 + T-rich Low_complexity Low_complexity 5 72 0 250 271 47 0 chr13 20341611 20341718 -81531451 - L1ME LINE L1 -295 5875 5764 234 229 16 16 chr13 20341930 20341991 -81531178 - L1ME LINE L1 -671 5495 5435 389 283 91 20 chr13 20342086 20342284 -81530885 - L1ME LINE L1 -807 5339 5128 23 68 0 0 chr13 20342284 20342328 -81530841 + AT_rich Low_complexity Low_complexity 1 44 0 533 180 0 0 chr13 20342478 20342567 -81530602 - FRAM SINE Alu -68 108 20 996 168 55 0 chr13 20342574 20342794 -81530375 - L1MB2 LINE L1 -2 6169 5938 29 0 0 0 chr13 20342794 20342823 -81530346 + AT_rich Low_complexity Low_complexity 1 29 0 2878 135 57 4 chr13 20342827 20343352 -81529817 - L1PA16 LINE L1 -22 6144 5592 1757 207 30 17 chr13 20343346 20343815 -81529354 - L1 LINE L1 -1446 4700 4226 * 406 304 52 36 chr13 20394169 20394740 -81478429 + L1ME3A LINE L1 5260 5873 -297 186 43 0 0 chr13 20394784 20394807 -81478362 + (TA)n Simple_repeat Simple_repeat 1 23 0 7407 42 0 0 chr13 20394822 20395953 -81477216 + L1PA5 LINE L1 5020 6150 -4 2375 60 0 0 chr13 20396066 20396382 -81476787 - AluY SINE Alu 0 316 1 217 227 27 13 chr13 20396696 20396771 -81476398 + (TA)n Simple_repeat Simple_repeat 2 77 0 27 49 0 0 chr13 20396967 20397008 -81476161 + AT_rich Low_complexity Low_complexity 1 41 0 676 307 98 17 chr13 20397473 20398115 -81475054 - L1MEc LINE L1 -4683 1713 1020 21 71 0 0 chr13 20399643 20399685 -81473484 + AT_rich Low_complexity Low_complexity 1 42 0 2543 167 34 85 chr13 20400590 20400694 -81472475 - LTR9 LTR ERV1 0 612 504 1858 122 7 11 chr13 20400694 20401001 -81472168 + AluSc SINE Alu 1 306 0 2543 167 34 85 chr13 20401001 20401540 -81471629 - LTR9 LTR ERV1 -108 504 1 429 20 0 0 chr13 20402791 20402841 -81470328 + (TG)n Simple_repeat Simple_repeat 2 51 0 854 265 43 12 chr13 20403126 20403379 -81469790 - MIR SINE MIR 0 262 2 2135 128 0 0 chr13 20403633 20403930 -81469239 - AluSx SINE Alu -15 297 1 227 357 22 0 chr13 20403930 20404022 -81469147 - MER5A DNA MER1_type -49 140 36 1132 82 0 0 chr13 20404580 20404715 -81468454 + AluSq/x SINE Alu 2 136 -177 2085 129 3 3 chr13 20404715 20405025 -81468144 + AluSx SINE Alu 1 310 -2 2262 50 50 20 chr13 20405384 20405682 -81467487 + AluY SINE Alu 1 307 -4 4555 138 5 19 chr13 20406970 20407726 -81465443 - L1MC1 LINE L1 -1 6612 5867 2123 111 10 10 chr13 20407731 20408038 -81465131 + AluSx SINE Alu 1 307 -5 450 127 0 0 chr13 20408038 20408109 -81465060 + (GA)n Simple_repeat Simple_repeat 1 71 0 1877 142 43 33 chr13 20408109 20408524 -81464645 - L1MC1 LINE L1 -742 5871 5449 5763 232 48 4 chr13 20408639 20410170 -81462999 - L1MC1 LINE L1 -1204 5222 3625 3947 216 31 35 chr13 20410678 20412043 -81461126 - L1MC1 LINE L1 -2792 3634 2265 2275 110 3 0 chr13 20412043 20412343 -81460826 + AluSp SINE Alu 1 301 -12 282 56 0 0 chr13 20412343 20412379 -81460790 + (TA)n Simple_repeat Simple_repeat 2 37 0 3947 216 31 35 chr13 20412379 20412613 -81460556 - L1MC1 LINE L1 -4159 2267 2038 967 164 223 50 chr13 20412626 20413109 -81460060 - LTR29 LTR ERV1 0 622 1 8646 184 77 44 chr13 20413110 20414535 -81458634 - L1MC1 LINE L1 -4413 2013 507 955 41 8 0 chr13 20414535 20414656 -81458513 + L1PA4 LINE L1 6034 6155 0 8646 184 77 44 chr13 20414656 20415174 -81457995 - L1MC1 LINE L1 -5919 507 7 223 278 22 0 chr13 20415822 20415912 -81457257 + T-rich Low_complexity Low_complexity 2 93 0 2127 105 14 3 chr13 20416208 20416504 -81456665 - AluSx SINE Alu -13 299 1 490 317 48 35 chr13 20416504 20416734 -81456435 + MLT1I LTR MaLR 176 408 -1 1655 259 111 9 chr13 20417054 20417611 -81455558 - L1ME3A LINE L1 -230 5940 5327 1209 188 150 11 chr13 20417613 20417879 -81455290 - MLT1D LTR MaLR -194 311 9 1570 219 33 22 chr13 20418403 20418764 -81454405 - MLT1A1 LTR MaLR 0 365 1 301 234 206 27 chr13 20418944 20419071 -81454098 + MIR3 SINE MIR 15 173 -89 397 288 66 54 chr13 20419191 20419590 -81453579 - MLT1K LTR MaLR -49 539 106 592 291 60 5 chr13 20421063 20421262 -81451907 + MIR SINE MIR 53 262 0 563 310 88 0 chr13 20421271 20421510 -81451659 + MIR SINE MIR 3 262 0 553 262 204 16 chr13 20422359 20422550 -81450619 - MIR SINE MIR -10 252 26 2306 152 31 14 chr13 20422642 20423063 -81450106 + MSTC LTR MaLR 1 428 0 355 308 56 85 chr13 20423208 20423598 -81449571 + L1M4 LINE L1 497 875 -5667 1440 265 134 3 chr13 20423667 20424300 -81448869 + L1M4 LINE L1 879 1594 -4948 27 49 0 0 chr13 20424352 20424393 -81448776 + AT_rich Low_complexity Low_complexity 1 41 0 774 253 37 81 chr13 20424423 20424858 -81448311 + L1M4 LINE L1 2140 2555 -4270 231 337 0 10 chr13 20424859 20424960 -81448209 + (TA)n Simple_repeat Simple_repeat 1 100 0 2535 244 67 12 chr13 20424973 20425872 -81447297 + L1M4 LINE L1 2588 3495 -3149 2234 97 7 0 chr13 20427224 20427522 -81445647 - AluSg SINE Alu -10 300 1 31 0 0 0 chr13 20427531 20427562 -81445607 + AT_rich Low_complexity Low_complexity 1 31 0 312 276 9 67 chr13 20427925 20428030 -81445139 + L2 LINE L2 3174 3272 0 1812 154 165 8 chr13 20428187 20428557 -81444612 - MSTA LTR MaLR 0 428 1 2072 131 3 10 chr13 20428891 20429205 -81443964 + AluSx SINE Alu 1 312 0 2161 179 26 21 chr13 20429423 20429853 -81443316 - MSTB1 LTR MaLR 0 432 1 2091 115 16 20 chr13 20430066 20430594 -81442575 + L1P4 LINE L1 5056 5582 -579 606 255 170 12 chr13 20430928 20431175 -81441994 - LTR33 LTR ERVL -235 286 1 23 33 0 0 chr13 20431569 20431599 -81441570 + AT_rich Low_complexity Low_complexity 1 30 0 399 235 156 28 chr13 20431601 20431865 -81441304 + L1ME4a LINE L1 5332 5622 -499 358 277 71 13 chr13 20431886 20432041 -81441128 + L1ME4a LINE L1 5733 5896 -225 608 87 11 0 chr13 20432122 20432214 -81440955 + (TA)n Simple_repeat Simple_repeat 2 94 0 21 0 0 0 chr13 20432683 20432704 -81440465 + AT_rich Low_complexity Low_complexity 1 21 0 1757 196 57 40 chr13 20433277 20433732 -81439437 - MLT1C LTR MaLR -4 463 1 326 268 21 0 chr13 20433901 20433998 -81439171 - MER103 DNA DNA -1 165 67 1463 248 35 28 chr13 20435709 20436133 -81437036 + LTR40a LTR ERVL 1 427 -92 440 240 53 50 chr13 20436310 20436502 -81436667 - MLT1I LTR MaLR -2 407 266 443 276 80 72 chr13 20437152 20437523 -81435646 + L1M4 LINE L1 3190 3557 -2589 1946 178 87 12 chr13 20437523 20437950 -81435219 + MER65C LTR ERV1 1 459 -2 443 276 80 72 chr13 20437950 20438026 -81435143 + L1M4 LINE L1 3557 3631 -2515 1994 147 16 0 chr13 20438026 20438333 -81434836 - AluJo SINE Alu 0 312 1 443 276 80 72 chr13 20438333 20438453 -81434716 + L1M4 LINE L1 3631 3745 -2401 1622 242 80 54 chr13 20438465 20439187 -81433982 + Charlie2a DNA MER1_type 1604 2344 -518 42596 35 21 3 chr13 20439216 20445256 -81427913 + L1PA3 LINE L1 3 6153 -2 235 291 18 0 chr13 20445290 20445345 -81427824 - MER5A DNA MER1_type -127 62 7 555 297 137 5 chr13 20446308 20446527 -81426642 + MIR SINE MIR 14 261 -1 538 308 109 48 chr13 20446552 20446864 -81426305 - L2 LINE L2 0 3272 2942 232 273 15 15 chr13 20447037 20447103 -81426066 + L2 LINE L2 3206 3271 -1 896 148 23 115 chr13 20447962 20448179 -81424990 + MER67D LTR ERV1 1 197 -317 189 0 0 0 chr13 20448306 20448327 -81424842 + (A)n Simple_repeat Simple_repeat 1 21 0 193 50 25 50 chr13 20448884 20448924 -81424245 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 352 275 28 21 chr13 20449772 20449914 -81423255 + HAL1b LINE L1 55 197 -1151 250 245 0 0 chr13 20451008 20451061 -81422108 + L2 LINE L2 3253 3305 -8 1177 105 0 0 chr13 20452625 20452778 -81420391 + AluSx SINE Alu 1 153 -159 1376 201 38 100 chr13 20454007 20454089 -81419080 + MLT1C LTR MaLR 1 87 -380 1182 367 89 35 chr13 20454089 20454495 -81418674 + MSTA LTR MaLR 1 428 0 1376 201 38 100 chr13 20454495 20454518 -81418651 + MLT1C LTR MaLR 87 110 -357 2047 172 83 2 chr13 20454518 20454914 -81418255 + MSTA LTR MaLR 1 428 0 1376 201 38 100 chr13 20454914 20455294 -81417875 + MLT1C LTR MaLR 110 467 0 1931 99 102 3 chr13 20455491 20455774 -81417395 + AluSp SINE Alu 2 312 -1 347 307 112 57 chr13 20455909 20456258 -81416911 - L2 LINE L2 -675 2639 2272 2126 96 10 20 chr13 20457095 20457397 -81415772 + AluSq SINE Alu 1 299 -14 284 265 142 43 chr13 20458846 20459148 -81414021 - L1M4 LINE L1 -815 5331 5000 201 266 0 47 chr13 20459241 20459305 -81413864 - MIR SINE MIR -105 157 97 942 146 12 130 chr13 20459678 20459925 -81413244 + MER20 DNA MER1_type 2 219 0 2508 169 14 86 chr13 20459984 20460541 -81412628 + MLT2B1 LTR ERVL 1 517 -3 843 284 11 17 chr13 20461652 20461906 -81411263 - MIR SINE MIR -12 250 3 905 223 69 89 chr13 20462900 20463488 -81409681 + L1M4c LINE L1 1510 2184 -4200 1344 174 50 129 chr13 20463515 20464129 -81409040 + L1M4c LINE L1 2869 3434 -2948 2041 236 51 62 chr13 20464581 20465705 -81407464 + L1M4c LINE L1 2030 3151 -3231 6207 74 6 28 chr13 20465883 20466751 -81406418 + SVA Other Other 535 1383 -3 9435 177 30 8 chr13 20466760 20468538 -81404631 - L1 LINE L1 -1287 4859 3033 1515 115 0 5 chr13 20468538 20468746 -81404423 + AluSp SINE Alu 107 313 0 9435 177 30 8 chr13 20468746 20468936 -81404233 - L1 LINE L1 -3113 3033 2849 3116 213 50 34 chr13 20469051 20469934 -81403235 - L1M4 LINE L1 -5007 1535 639 536 295 107 50 chr13 20471276 20471595 -81401574 - L2 LINE L2 -696 2618 2282 361 245 47 19 chr13 20471596 20471702 -81401467 + MER94 DNA DNA 1 109 -25 518 292 51 31 chr13 20471705 20471900 -81401269 - L2 LINE L2 -1014 2300 2102 21 57 0 0 chr13 20472070 20472105 -81401064 + AT_rich Low_complexity Low_complexity 1 35 0 357 211 0 0 chr13 20472264 20472335 -81400834 + MIR SINE MIR 139 209 -53 2616 88 8 0 chr13 20472358 20472710 -81400459 - THE1A LTR MaLR 0 355 1 24 32 0 0 chr13 20472724 20472755 -81400414 + AT_rich Low_complexity Low_complexity 1 31 0 400 269 134 17 chr13 20472755 20472874 -81400295 - FLAM_A SINE Alu 0 133 1 558 215 173 25 chr13 20472968 20473205 -81399964 - HAL1 LINE L1 -310 2197 1926 350 300 127 17 chr13 20473200 20473547 -81399622 - L1M4 LINE L1 -948 5198 4814 * 1152 264 64 30 chr13 20473637 20474043 -81399126 - HAL1 LINE L1 -613 1894 1475 702 278 137 38 chr13 20475108 20475583 -81397586 - HAL1 LINE L1 -1324 1183 662 355 322 90 37 chr13 20475635 20475827 -81397342 - HAL1 LINE L1 -1940 567 358 2349 78 0 0 chr13 20475827 20476122 -81397047 - AluY SINE Alu -16 295 1 355 322 90 37 chr13 20476122 20476174 -81396995 - HAL1 LINE L1 -2149 358 310 272 231 0 0 chr13 20476179 20476231 -81396938 + LTR30 LTR ERV1 1 52 -670 1500 111 193 182 chr13 20476231 20476754 -81396415 + LTR12 LTR ERV1 53 581 -133 202 399 54 14 chr13 20478788 20478936 -81394233 + L2 LINE L2 2906 3059 -213 256 174 43 43 chr13 20478995 20479064 -81394105 - MER116 DNA Mariner -4 76 8 24 53 0 0 chr13 20479415 20479453 -81393716 + AT_rich Low_complexity Low_complexity 1 38 0 305 348 57 8 chr13 20479642 20479886 -81393283 + L1ME LINE L1 5547 5802 -319 582 246 32 27 chr13 20480411 20480631 -81392538 - MER20B DNA MER1_type -30 753 533 1122 201 98 38 chr13 20481977 20482295 -81390874 + MER2 DNA MER2_type 1 337 -8 1213 145 36 0 chr13 20483618 20483839 -81389330 - L1MA8 LINE L1 -147 6144 5916 804 140 51 6 chr13 20483839 20483988 -81389181 + L1MA8 LINE L1 6124 6287 -4 230 324 101 0 chr13 20484206 20484354 -81388815 - MER103 DNA DNA -1 165 3 1722 185 24 18 chr13 20484362 20484448 -81388721 - MER2 DNA MER2_type 0 344 260 2204 110 0 7 chr13 20484448 20484748 -81388421 + AluSx SINE Alu 1 298 -14 1722 185 24 18 chr13 20484748 20485002 -81388167 - MER2 DNA MER2_type -84 260 2 6779 171 158 43 chr13 20485004 20486578 -81386591 + MER52A LTR ERV1 1 1755 0 361 233 38 75 chr13 20487024 20487157 -81386012 + L2 LINE L2 3095 3222 -91 954 207 14 100 chr13 20487161 20487517 -81385652 - L1MA4 LINE L1 -2 6298 5980 323 360 20 28 chr13 20487580 20487833 -81385336 - L2 LINE L2 -1058 2256 2006 266 290 159 28 chr13 20489083 20489190 -81383979 + MIR SINE MIR 16 136 -72 296 296 227 8 chr13 20490376 20490508 -81382661 - MIR3 SINE MIR -10 198 38 428 328 31 13 chr13 20490816 20491045 -81382124 + L2 LINE L2 636 868 -2446 255 216 4 43 chr13 20491087 20491353 -81381816 + AluJo SINE Alu 1 282 -20 193 387 118 14 chr13 20491383 20491815 -81381354 + L2 LINE L2 976 1452 -1862 815 276 68 41 chr13 20491871 20492457 -81380712 - L1M4 LINE L1 -1175 4971 4370 979 332 98 33 chr13 20492590 20493162 -81380007 + L2 LINE L2 2368 2976 -338 352 220 220 10 chr13 20493164 20493264 -81379905 + L2 LINE L2 3190 3310 -3 1886 125 68 0 chr13 20493524 20493803 -81379366 - AluSx SINE Alu -14 298 1 320 318 70 23 chr13 20493813 20493942 -81379227 + L2 LINE L2 3171 3305 -8 28 0 0 0 chr13 20494800 20494828 -81378341 + AT_rich Low_complexity Low_complexity 1 28 0 279 79 0 0 chr13 20494976 20495014 -81378155 + (ATG)n Simple_repeat Simple_repeat 2 39 0 1713 264 30 6 chr13 20496107 20496608 -81376561 - L1M4 LINE L1 -1950 4196 3684 27 0 0 0 chr13 20496612 20496639 -81376530 + AT_rich Low_complexity Low_complexity 1 27 0 4438 193 16 33 chr13 20496641 20497659 -81375510 - L1MA8 LINE L1 -7 6284 5285 224 291 128 40 chr13 20497772 20497920 -81375249 + L2 LINE L2 2744 2904 -410 2586 43 0 0 chr13 20498155 20498459 -81374710 - AluY SINE Alu -7 304 1 2139 91 7 3 chr13 20498557 20498855 -81374314 + AluSq SINE Alu 12 310 -3 28 48 0 0 chr13 20499713 20499755 -81373414 + AT_rich Low_complexity Low_complexity 1 42 0 460 266 189 31 chr13 20500218 20500477 -81372692 - L2 LINE L2 0 3313 3014 1402 195 76 12 chr13 20500804 20501147 -81372022 + MLT1A1 LTR MaLR 1 365 0 270 311 94 0 chr13 20501914 20502020 -81371149 - MIR SINE MIR -38 224 109 376 349 77 40 chr13 20502148 20502592 -81370577 - L2 LINE L2 -1935 1379 920 2344 91 3 0 chr13 20502929 20503236 -81369933 + AluSg SINE Alu 1 308 -2 282 248 79 30 chr13 20503622 20503723 -81369446 + L2 LINE L2 3204 3309 -4 2448 262 88 52 chr13 20505315 20506727 -81366442 + HAL1 LINE L1 1022 2485 -22 588 169 17 8 chr13 20506729 20506847 -81366322 - AluJo SINE Alu -8 304 186 740 151 0 0 chr13 20506860 20506979 -81366190 - AluJo SINE Alu -192 120 2 32 26 0 0 chr13 20508276 20508315 -81364854 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr13 20509364 20509386 -81363783 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 20509449 20509472 -81363697 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr13 20509773 20509797 -81363372 + AT_rich Low_complexity Low_complexity 1 24 0 317 364 29 35 chr13 20510509 20510877 -81362292 + L2 LINE L2 2695 3056 -216 184 156 0 67 chr13 20511911 20511956 -81361213 - L2 LINE L2 0 3313 3272 259 270 70 9 chr13 20512062 20512177 -81360992 - L1MC4 LINE L1 -21 8021 7900 278 256 39 0 chr13 20512182 20512311 -81360858 + (TA)n Simple_repeat Simple_repeat 2 135 0 1848 221 86 60 chr13 20512314 20512992 -81360177 - L1MC4 LINE L1 -136 7906 7212 265 235 0 39 chr13 20513304 20513406 -81359763 + CT-rich Low_complexity Low_complexity 1 98 0 275 324 176 14 chr13 20513542 20513752 -81359417 + MIR SINE MIR 4 247 -15 187 358 46 28 chr13 20516283 20516392 -81356777 - L2 LINE L2 -12 3301 3191 620 195 0 16 chr13 20516587 20516715 -81356454 - MIR SINE MIR -6 256 131 293 270 146 0 chr13 20516973 20517062 -81356107 - MIR SINE MIR -147 115 14 1836 274 96 22 chr13 20520685 20521487 -81351682 - L1ME3A LINE L1 -38 6115 5255 225 0 0 0 chr13 20521576 20521601 -81351568 + (TG)n Simple_repeat Simple_repeat 2 26 0 1262 273 68 25 chr13 20521602 20522048 -81351121 - L1ME3A LINE L1 -1045 5084 4599 2233 115 0 3 chr13 20522048 20522343 -81350826 - AluSg SINE Alu -15 295 2 1262 273 68 25 chr13 20522343 20522562 -81350607 - L1ME3A LINE L1 -1530 4599 4391 2091 113 24 0 chr13 20522566 20522858 -81350311 - AluSx SINE Alu -13 299 1 1072 284 102 9 chr13 20522880 20523274 -81349895 - LTR16A LTR ERVL -2 455 7 2676 163 12 5 chr13 20523468 20523891 -81349278 - MSTB LTR MaLR 0 426 1 2277 207 32 98 chr13 20524128 20524849 -81348320 - LTR8 LTR ERV1 -18 673 1 441 212 122 14 chr13 20524934 20524955 -81348214 + L1M4 LINE L1 2902 2919 -3227 1563 173 0 4 chr13 20524955 20525209 -81347960 + AluJo SINE Alu 41 293 -19 441 212 122 14 chr13 20525209 20525409 -81347760 + L1M4 LINE L1 2919 3147 -2999 30 45 0 0 chr13 20525543 20525587 -81347582 + AT_rich Low_complexity Low_complexity 1 44 0 739 271 83 58 chr13 20525588 20525869 -81347300 - L1MEd LINE L1 -4576 1734 1461 2156 109 7 7 chr13 20525869 20526173 -81346996 - AluSx SINE Alu -8 304 1 739 271 83 58 chr13 20526173 20526800 -81346369 - L1MEd LINE L1 -4849 1461 758 182 313 60 0 chr13 20527481 20527548 -81345621 + L2 LINE L2 3201 3271 -1 553 324 22 0 chr13 20528166 20528351 -81344818 - MIR SINE MIR -14 248 60 31 96 0 0 chr13 20529432 20529526 -81343643 + AT_rich Low_complexity Low_complexity 1 94 0 21 57 0 0 chr13 20529577 20529612 -81343557 + AT_rich Low_complexity Low_complexity 1 35 0 526 280 36 68 chr13 20529637 20529887 -81343282 - MLT1J LTR MaLR -42 469 228 622 139 47 47 chr13 20529934 20530063 -81343106 - AluJb SINE Alu -2 310 182 966 114 8 0 chr13 20530063 20530195 -81342974 - AluSq/x SINE Alu -180 133 1 548 284 76 20 chr13 20530197 20530394 -81342775 - MLT1J LTR MaLR -296 215 8 1395 104 5 0 chr13 20531172 20531364 -81341805 + AluSg/x SINE Alu 114 306 -3 338 343 19 0 chr13 20531376 20531484 -81341685 + MER5A DNA MER1_type 79 188 -1 432 330 45 49 chr13 20532289 20532577 -81340592 + MLT1K LTR MaLR 166 452 -136 198 0 0 0 chr13 20532656 20532678 -81340491 + (T)n Simple_repeat Simple_repeat 1 22 0 333 0 0 0 chr13 20532695 20532732 -81340437 + (TG)n Simple_repeat Simple_repeat 2 38 0 333 303 67 17 chr13 20532822 20532941 -81340228 + L2 LINE L2 3180 3304 -9 649 315 68 64 chr13 20533816 20534334 -81338835 + MLT1L LTR MaLR 2 521 -94 2219 151 34 63 chr13 20535261 20535739 -81337430 + MLT2C2 LTR ERVL 1 464 0 195 42 0 0 chr13 20535872 20535896 -81337273 + (CA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr13 20537310 20537332 -81335837 + AT_rich Low_complexity Low_complexity 1 22 0 1597 276 3 11 chr13 20537671 20538037 -81335132 + L1PA15 LINE L1 1 363 -6424 5527 258 79 27 chr13 20538214 20541176 -81331993 - L1PA13 LINE L1 -3284 3513 377 * 12032 199 26 9 chr13 20541173 20544821 -81328348 + L1PA15 LINE L1 3109 6812 -4 2451 74 0 0 chr13 20544830 20545141 -81328028 + AluY SINE Alu 1 311 0 1163 175 52 22 chr13 20545748 20546044 -81327125 + MER67C LTR ERV1 1 309 -243 21 0 0 0 chr13 20546074 20546095 -81327074 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr13 20546447 20546480 -81326689 + (TG)n Simple_repeat Simple_repeat 2 34 0 2223 102 0 0 chr13 20546516 20546799 -81326370 - AluSq SINE Alu -29 284 2 519 191 227 12 chr13 20547083 20547383 -81325786 + LTR37A LTR ERV1 18 417 -9 2220 117 0 0 chr13 20547668 20547966 -81325203 + AluSq SINE Alu 1 298 -15 23 86 0 0 chr13 20548262 20548320 -81324849 + AT_rich Low_complexity Low_complexity 1 58 0 407 316 113 22 chr13 20548495 20548699 -81324470 + L1MC4a LINE L1 5326 5564 -606 2241 98 0 0 chr13 20548699 20549004 -81324165 - AluSq SINE Alu 0 305 1 407 316 113 22 chr13 20549004 20549073 -81324096 + L1MC4a LINE L1 5564 5625 -545 398 229 9 9 chr13 20549220 20549325 -81323844 + L1MC4a LINE L1 5732 5836 -1972 21 0 0 0 chr13 20549611 20549632 -81323537 + AT_rich Low_complexity Low_complexity 1 21 0 199 385 0 0 chr13 20549806 20549889 -81323280 + MIR SINE MIR 22 104 -158 195 269 131 117 chr13 20550038 20550183 -81322986 - L3b LINE CR1 -155 1428 1282 181 253 114 25 chr13 20550213 20550292 -81322877 - L3 LINE CR1 -159 1418 1333 254 263 13 115 chr13 20552391 20552547 -81320622 + MER70-int LTR ERVL 2511 2650 -3004 390 331 39 39 chr13 20552938 20553246 -81319923 + MER70-int LTR ERVL 1796 2103 -2920 1169 202 10 26 chr13 20553510 20553817 -81319352 - L1MA6 LINE L1 -1 6299 5998 1425 252 97 16 chr13 20554386 20554810 -81318359 - L1MC4 LINE L1 -1065 6977 6520 1927 154 99 3 chr13 20554810 20555142 -81318027 + MLT2D LTR ERVL 1 364 -50 291 143 63 16 chr13 20555209 20555272 -81317897 + MLT2D LTR ERVL 455 520 0 450 222 10 0 chr13 20555282 20555381 -81317788 - L1MC4a LINE L1 -1366 6442 6343 3223 242 72 13 chr13 20555409 20557266 -81315903 - L1ME2 LINE L1 -36 6128 4166 735 286 105 18 chr13 20557265 20557768 -81315401 - L1ME2 LINE L1 -2766 3380 2834 * 1515 142 46 0 chr13 20557797 20558079 -81315090 - L1MA8 LINE L1 -10 6281 5987 1132 152 20 0 chr13 20558086 20558290 -81314879 - L1MA8 LINE L1 -447 5853 5646 716 261 93 0 chr13 20558303 20558583 -81314586 - L1ME2 LINE L1 -3327 2819 2514 288 265 174 0 chr13 20559047 20559145 -81314024 + MIR SINE MIR 31 145 -63 281 380 6 25 chr13 20559435 20559593 -81313576 - MIR3 SINE MIR -24 184 30 1261 219 7 14 chr13 20560651 20561095 -81312074 + MLT1D LTR MaLR 5 503 -2 445 302 82 6 chr13 20561107 20561289 -81311880 + LTR16C LTR ERVL 296 491 0 698 244 43 158 chr13 20561735 20562324 -81310845 - L2 LINE L2 -129 3184 2659 208 231 19 0 chr13 20562327 20562379 -81310790 - L2 LINE L2 -1898 1416 1364 652 211 15 25 chr13 20562379 20562578 -81310591 - L2 LINE L2 -2419 895 699 266 238 83 12 chr13 20563094 20563178 -81309991 - MIR SINE MIR -86 176 87 679 237 30 112 chr13 20563220 20563515 -81309654 - Zaphod DNA AcHobo -3759 272 2 746 288 72 79 chr13 20563627 20564182 -81308987 - L2 LINE L2 -622 2692 2142 371 271 19 9 chr13 20564204 20564311 -81308858 + L2 LINE L2 2531 2638 -676 235 293 133 51 chr13 20564305 20564345 -81308824 - L2 LINE L2 -2816 498 463 * 1560 207 25 17 chr13 20564345 20564707 -81308462 - MLT1A1 LTR MaLR 0 365 1 235 293 133 51 chr13 20564707 20564922 -81308247 - L2 LINE L2 -2851 463 222 453 313 13 9 chr13 20565108 20565250 -81307919 - MER5A DNA MER1_type -1 188 32 185 351 27 0 chr13 20565281 20565355 -81307814 - L2 LINE L2 -43 3270 3195 29 0 0 0 chr13 20565411 20565440 -81307729 + AT_rich Low_complexity Low_complexity 1 29 0 540 284 53 62 chr13 20567481 20567706 -81305463 + MIR SINE MIR 28 250 -12 3859 129 20 22 chr13 20568774 20569410 -81303759 + MER41B LTR ERV1 1 635 0 4007 111 12 7 chr13 20569456 20570049 -81303120 + MER4A LTR ERV1 1 596 -4 23 0 0 0 chr13 20570065 20570088 -81303081 + AT_rich Low_complexity Low_complexity 1 23 0 181 365 0 0 chr13 20571115 20571178 -81301991 - L2 LINE L2 0 3313 3251 772 234 121 0 chr13 20571230 20571461 -81301708 - MIR SINE MIR -3 259 1 22 70 0 0 chr13 20571571 20571614 -81301555 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr13 20571888 20571915 -81301254 + AT_rich Low_complexity Low_complexity 1 27 0 2161 122 3 0 chr13 20572499 20572794 -81300375 - AluSg SINE Alu -14 296 1 1784 97 48 87 chr13 20572843 20573152 -81300017 + AluSx SINE Alu 1 297 -15 213 356 55 6 chr13 20573215 20573378 -81299791 - MIR SINE MIR -6 256 86 291 310 49 21 chr13 20573618 20573760 -81299409 - MLT1K LTR MaLR -266 322 177 216 200 0 0 chr13 20573806 20573871 -81299298 + (TG)n Simple_repeat Simple_repeat 1 65 0 2460 61 10 0 chr13 20574562 20574858 -81298311 - AluY SINE Alu -12 299 1 2167 136 0 3 chr13 20575403 20575712 -81297457 - AluSq SINE Alu -5 308 1 1684 272 79 67 chr13 20575833 20576858 -81296311 - L2 LINE L2 -86 3227 2175 194 139 47 0 chr13 20576959 20577002 -81296167 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 271 330 80 0 chr13 20577005 20577093 -81296076 - L2 LINE L2 -5 3267 3173 4161 153 41 21 chr13 20577116 20577758 -81295411 + Tigger1 DNA MER2_type 1 664 -1754 1958 146 10 0 chr13 20577758 20578059 -81295110 - AluJb SINE Alu -8 304 1 4161 153 41 21 chr13 20578059 20578214 -81294955 + Tigger1 DNA MER2_type 664 814 -1604 15988 219 38 17 chr13 20578223 20581626 -81291543 + L1PA15 LINE L1 16 3345 -4258 405 39 0 0 chr13 20581626 20581677 -81291492 + (CA)n Simple_repeat Simple_repeat 2 52 0 15988 219 38 17 chr13 20581677 20585420 -81287749 + L1PA15 LINE L1 3345 7599 -4 8306 134 28 11 chr13 20585432 20586839 -81286330 + Tigger1 DNA MER2_type 802 2231 -187 33 25 0 0 chr13 20586929 20586969 -81286200 + AT_rich Low_complexity Low_complexity 1 40 0 1970 138 47 26 chr13 20586979 20587364 -81285805 - L1MA4 LINE L1 -8 6292 5900 955 151 75 0 chr13 20587366 20587552 -81285617 + Tigger1 DNA MER2_type 2217 2416 -2 21 0 0 0 chr13 20588892 20588913 -81284256 + AT_rich Low_complexity Low_complexity 1 21 0 2015 155 0 3 chr13 20588926 20589223 -81283946 - AluSx SINE Alu -16 296 1 956 189 25 45 chr13 20589957 20590201 -81282968 - MLT1A1 LTR MaLR -126 239 1 2360 98 0 0 chr13 20590820 20591115 -81282054 + AluSg SINE Alu 1 295 -15 2031 67 0 4 chr13 20591855 20592122 -81281047 + L1PA7 LINE L1 5876 6141 -13 709 209 21 38 chr13 20592138 20592377 -81280792 + L1MB8 LINE L1 5927 6161 -17 475 311 66 6 chr13 20594001 20594184 -81278985 + MIR SINE MIR 9 202 -60 911 237 37 12 chr13 20594554 20595009 -81278160 + LTR55 LTR ERV 1 533 -15 1325 175 0 31 chr13 20595019 20595250 -81277919 + L1MA3 LINE L1 6029 6251 -54 2131 123 3 10 chr13 20595250 20595550 -81277619 + AluSx SINE Alu 2 299 -13 1325 175 0 31 chr13 20595550 20595604 -81277565 + L1MA3 LINE L1 6251 6305 0 417 310 222 28 chr13 20595607 20596109 -81277060 - L2 LINE L2 -459 2855 2451 1461 179 68 20 chr13 20596109 20596405 -81276764 + AluJo SINE Alu 1 310 -2 417 310 222 28 chr13 20596405 20596718 -81276451 - L2 LINE L2 -863 2451 1882 261 229 48 24 chr13 20597829 20597912 -81275257 - MIR SINE MIR -66 196 112 933 219 104 1 chr13 20598167 20598525 -81274644 + Charlie4a DNA MER1_type 51 490 -18 2139 93 0 60 chr13 20598530 20598857 -81274312 - AluSq SINE Alu 0 309 1 602 284 91 24 chr13 20599081 20599335 -81273834 + LTR16A LTR ERVL 114 384 -66 661 131 85 26 chr13 20599357 20599510 -81273659 - MER53 DNA DNA -27 162 1 286 169 0 46 chr13 20599510 20599570 -81273599 + LTR16A LTR ERVL 394 450 0 628 217 43 0 chr13 20600025 20600140 -81273029 - FLAM_A SINE Alu -13 120 1 25 31 0 0 chr13 20600883 20600915 -81272254 + AT_rich Low_complexity Low_complexity 1 32 0 267 103 0 0 chr13 20601237 20601276 -81271893 + (TG)n Simple_repeat Simple_repeat 2 40 0 336 176 0 0 chr13 20602349 20602417 -81270752 + CT-rich Low_complexity Low_complexity 5 72 0 262 276 86 112 chr13 20602534 20602766 -81270403 + MIR SINE MIR 10 235 -27 245 264 64 96 chr13 20602921 20603046 -81270123 + MIR SINE MIR 52 172 -90 348 24 0 0 chr13 20603412 20603453 -81269716 + (GA)n Simple_repeat Simple_repeat 2 42 0 546 256 61 17 chr13 20603656 20603836 -81269333 + MIR SINE MIR 1 188 -74 2247 120 73 40 chr13 20603845 20604243 -81268926 + L1MA7 LINE L1 5825 6241 -50 2046 92 28 3 chr13 20604243 20604527 -81268642 + AluSx SINE Alu 1 291 -21 2247 120 73 40 chr13 20604527 20604579 -81268590 + L1MA7 LINE L1 6241 6290 -1 204 217 0 22 chr13 20604598 20604644 -81268525 + MIR SINE MIR 186 230 -32 27 29 0 0 chr13 20604655 20604689 -81268480 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr13 20605532 20605556 -81267613 + AT_rich Low_complexity Low_complexity 1 24 0 1764 196 70 62 chr13 20605720 20606221 -81266948 - MLT1D LTR MaLR 0 505 1 21630 145 19 35 chr13 20606417 20609130 -81264039 + L1M1 LINE L1 22 2776 -4789 561 26 0 26 chr13 20609130 20609208 -81263961 + L1PA4 LINE L1 6080 6155 0 21630 145 19 35 chr13 20609208 20611011 -81262158 + L1M1 LINE L1 2776 4453 -3112 4054 89 16 0 chr13 20611011 20611580 -81261589 + L1PB1 LINE L1 5571 6151 0 21630 145 19 35 chr13 20611580 20612039 -81261130 + L1M1 LINE L1 4453 4918 -2647 1339 284 266 20 chr13 20612795 20613790 -81259379 - L2 LINE L2 -113 3200 1858 2274 144 5 14 chr13 20613790 20614159 -81259010 - MER47A DNA MER2_type 0 366 1 1339 284 266 20 chr13 20614159 20614346 -81258823 - L2 LINE L2 -1455 1858 1718 186 43 0 0 chr13 20615480 20615503 -81257666 + (CAA)n Simple_repeat Simple_repeat 2 24 0 253 365 153 5 chr13 20615558 20615780 -81257389 - MIR SINE MIR -2 260 6 233 293 27 27 chr13 20616192 20616267 -81256902 + MIR SINE MIR 8 82 -180 1501 202 3 16 chr13 20616680 20616987 -81256182 - AluJb SINE Alu -9 303 1 201 158 0 0 chr13 20617030 20617068 -81256101 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 34 55 0 0 chr13 20617075 20617130 -81256039 + AT_rich Low_complexity Low_complexity 1 55 0 750 293 111 30 chr13 20618233 20618908 -81254261 + L1MCa LINE L1 2193 2927 -3499 327 289 32 16 chr13 20618912 20619102 -81254067 + L1ME4a LINE L1 5759 5951 -219 2212 195 53 29 chr13 20619164 20619748 -81253421 + L1ME1 LINE L1 5549 6146 -20 24 77 0 0 chr13 20619935 20619987 -81253182 + AT_rich Low_complexity Low_complexity 1 52 0 624 245 88 10 chr13 20620872 20620924 -81252245 - MLT2F LTR ERVL -2 661 614 266 87 22 0 chr13 20620924 20620970 -81252199 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 624 245 88 10 chr13 20620970 20621121 -81252048 - MLT2F LTR ERVL -49 614 442 2800 226 57 12 chr13 20621121 20622375 -81250794 + L1MB7 LINE L1 4864 6175 -9 1087 227 74 35 chr13 20622391 20622751 -81250418 - MLT2F LTR ERVL -215 448 4 4571 139 51 93 chr13 20622879 20623028 -81250141 - L1MA9 LINE L1 0 6312 6158 402 138 0 0 chr13 20623028 20623093 -81250076 - AluS SINE Alu -15 294 230 4571 139 51 93 chr13 20623093 20624365 -81248804 - L1MA9 LINE L1 -154 6158 4904 4218 247 154 40 chr13 20624363 20624884 -81248285 - L1MA9 LINE L1 -1457 4689 4229 * 322 118 0 0 chr13 20624884 20624935 -81248234 - Alu SINE Alu 0 300 250 4218 247 154 40 chr13 20624935 20625843 -81247326 - L1MA9 LINE L1 -1917 4229 3015 2135 103 7 7 chr13 20625843 20626135 -81247034 - AluSp SINE Alu -21 292 1 4218 247 154 40 chr13 20626135 20626235 -81246934 - L1MA9 LINE L1 -3131 3015 2928 24 0 0 0 chr13 20626406 20626430 -81246739 + AT_rich Low_complexity Low_complexity 1 24 0 310 210 169 40 chr13 20626451 20626575 -81246594 + L1ME4a LINE L1 5982 6121 0 909 130 0 0 chr13 20627820 20627951 -81245218 - FLAM_C SINE Alu -2 131 1 227 283 0 0 chr13 20628251 20628304 -81244865 + L3 LINE CR1 1524 1576 -1 690 290 108 58 chr13 20628421 20628849 -81244320 - MLT1J LTR MaLR -18 493 45 273 57 0 0 chr13 20628886 20628921 -81244248 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 207 146 0 0 chr13 20628927 20628968 -81244201 + (CA)n Simple_repeat Simple_repeat 2 42 0 337 330 74 11 chr13 20629137 20629313 -81243856 + MIR SINE MIR 62 248 -14 2080 107 3 17 chr13 20629469 20629769 -81243400 + AluSq SINE Alu 1 296 -17 279 265 48 12 chr13 20629780 20629863 -81243306 + MIR SINE MIR 73 158 -104 326 305 144 6 chr13 20629984 20630158 -81243011 - MIR SINE MIR -42 220 23 2614 193 41 7 chr13 20630810 20631350 -81241819 - MER74A LTR ERVL 0 558 1 491 333 56 0 chr13 20631653 20631815 -81241354 + MIR3 SINE MIR 32 202 -6 22 0 0 0 chr13 20632549 20632571 -81240598 + AT_rich Low_complexity Low_complexity 1 22 0 206 254 0 17 chr13 20633363 20633422 -81239747 - MIR3 SINE MIR -48 160 103 282 322 82 67 chr13 20633447 20633838 -81239331 - MLT1K LTR MaLR -190 398 2 336 303 76 8 chr13 20634449 20634568 -81238601 + L2 LINE L2 3186 3312 -1 3264 101 24 0 chr13 20637846 20638311 -81234858 - L1PA13 LINE L1 -6 6157 5682 273 293 39 72 chr13 20638629 20638810 -81234359 - LTR33 LTR ERVL -24 497 323 1955 124 0 0 chr13 20639214 20639487 -81233682 + AluSc SINE Alu 1 273 -36 2057 164 91 30 chr13 20639991 20640429 -81232740 + MLT1C LTR MaLR 3 467 0 2252 62 51 20 chr13 20641890 20642182 -81230987 - AluSp SINE Alu -11 302 2 1874 170 13 0 chr13 20642824 20643130 -81230039 - AluJb SINE Alu 0 312 3 207 0 0 0 chr13 20643631 20643654 -81229515 + (CA)n Simple_repeat Simple_repeat 2 24 0 1540 269 150 19 chr13 20643890 20644810 -81228359 - L1MC4 LINE L1 -51 7991 6951 8275 209 30 18 chr13 20644822 20645679 -81227490 - L1MB2 LINE L1 -8 6163 5318 189 0 0 0 chr13 20645679 20645700 -81227469 + (TTG)n Simple_repeat Simple_repeat 1 21 0 8275 209 30 18 chr13 20645700 20645721 -81227448 - L1MB2 LINE L1 -853 5318 5299 7116 37 0 0 chr13 20645721 20646841 -81226328 - L1PA3 LINE L1 0 6155 5017 8275 209 30 18 chr13 20646841 20647588 -81225581 - L1MB2 LINE L1 -872 5299 4563 2089 186 56 0 chr13 20647588 20647997 -81225172 - MSTB1 LTR MaLR 0 432 1 8275 209 30 18 chr13 20647997 20649297 -81223872 - L1MB2 LINE L1 -1608 4563 3198 230 286 0 0 chr13 20650043 20650099 -81223070 - L2 LINE L2 -493 2821 2766 31 68 0 0 chr13 20650602 20650661 -81222508 + AT_rich Low_complexity Low_complexity 1 59 0 29 47 0 0 chr13 20650891 20650934 -81222235 + AT_rich Low_complexity Low_complexity 1 43 0 992 240 123 10 chr13 20651105 20651413 -81221756 + LTR16B LTR ERVL 116 458 -6 321 270 110 67 chr13 20651772 20652128 -81221041 + L1ME LINE L1 604 974 -5096 22 56 0 0 chr13 20652505 20652541 -81220628 + AT_rich Low_complexity Low_complexity 1 36 0 1174 249 186 40 chr13 20653163 20653717 -81219452 + MLT1E1 LTR MaLR 1 635 -19 1195 213 26 96 chr13 20653718 20654197 -81218972 + MLT2B3 LTR ERVL 1 451 -2 445 290 62 31 chr13 20654203 20654427 -81218742 + L1ME LINE L1 2355 2585 -3495 523 271 103 58 chr13 20654430 20654740 -81218429 - MER46C DNA MER2_type -6 332 9 236 219 0 27 chr13 20654827 20654900 -81218269 + L1ME LINE L1 2719 2789 -3291 297 0 0 0 chr13 20655059 20655092 -81218077 + (CA)n Simple_repeat Simple_repeat 2 34 0 458 283 117 60 chr13 20655149 20655703 -81217466 - L1MDa LINE L1 -5800 740 155 1902 68 0 0 chr13 20655703 20655939 -81217230 - LTR12 LTR ERV1 0 714 479 5496 93 54 4 chr13 20655940 20656723 -81216446 - LTR12 LTR ERV1 -4 822 1 290 309 59 0 chr13 20656723 20656859 -81216310 - L1MDa LINE L1 -6382 158 15 706 145 60 177 chr13 20657182 20657430 -81215739 - MER20 DNA MER1_type 0 219 1 2040 178 71 57 chr13 20658862 20658961 -81214208 - MER67D LTR ERV1 0 514 418 1653 161 0 0 chr13 20658961 20659235 -81213934 + L1PA13 LINE L1 5878 6151 -12 2040 178 71 57 chr13 20659235 20659642 -81213527 - MER67D LTR ERV1 -96 418 1 327 344 78 0 chr13 20659687 20659815 -81213354 - MIR SINE MIR -84 178 41 341 140 0 0 chr13 20661977 20662027 -81211142 - AluS SINE Alu -228 74 25 1787 100 0 0 chr13 20662027 20662258 -81210911 + AluSg/x SINE Alu 80 310 0 24 53 0 0 chr13 20662289 20662327 -81210842 + AT_rich Low_complexity Low_complexity 1 38 0 2045 150 144 0 chr13 20662472 20662846 -81210323 + MSTC LTR MaLR 1 428 0 1644 116 0 0 chr13 20664699 20664924 -81208245 - AluSg/x SINE Alu 0 312 88 347 172 16 0 chr13 20665510 20665574 -81207595 - MLT1J LTR MaLR -40 471 407 622 224 210 23 chr13 20665672 20665886 -81207283 - MLT1J LTR MaLR -234 277 24 2129 112 11 0 chr13 20667736 20668022 -81205147 + AluSg SINE Alu 9 297 -13 2243 107 72 20 chr13 20668683 20669029 -81204140 - THE1B LTR MaLR 0 364 1 216 184 0 0 chr13 20669786 20669824 -81203345 + (CA)n Simple_repeat Simple_repeat 1 38 0 187 316 31 92 chr13 20671060 20671158 -81202011 - MIR SINE MIR -64 144 53 308 348 0 0 chr13 20671460 20671529 -81201640 - L3 LINE CR1 -95 1482 1414 210 37 0 0 chr13 20671546 20671573 -81201596 + (TTTAG)n Simple_repeat Simple_repeat 3 29 0 429 323 79 37 chr13 20671657 20672035 -81201134 + MLT1K LTR MaLR 137 530 -58 337 371 105 34 chr13 20672127 20672715 -81200454 - L3 LINE CR1 -249 1328 699 27 0 0 0 chr13 20672739 20672766 -81200403 + AT_rich Low_complexity Low_complexity 1 27 0 204 67 0 0 chr13 20674628 20674658 -81198511 + (T)n Simple_repeat Simple_repeat 1 30 0 253 180 45 11 chr13 20674913 20675002 -81198167 + (TA)n Simple_repeat Simple_repeat 1 92 0 180 0 0 0 chr13 20676202 20676222 -81196947 + (TG)n Simple_repeat Simple_repeat 2 21 0 314 231 44 44 chr13 20676514 20676605 -81196564 - L2 LINE L2 -1 3312 3222 24 53 0 0 chr13 20676622 20676660 -81196509 + AT_rich Low_complexity Low_complexity 1 38 0 570 274 222 0 chr13 20677392 20677604 -81195565 + MIR SINE MIR 2 260 -2 438 254 25 8 chr13 20678321 20678443 -81194726 - LTR33 LTR ERVL -5 516 393 256 373 25 21 chr13 20678705 20678941 -81194228 - ERVL LTR ERVL -437 5327 5091 1148 286 63 34 chr13 20678997 20679441 -81193728 - ERVL LTR ERVL -1164 4600 4144 848 351 37 11 chr13 20679692 20679966 -81193203 - ERVL LTR ERVL -1975 3789 3501 1967 160 0 0 chr13 20679966 20680278 -81192891 - AluSx SINE Alu 0 312 1 848 351 37 11 chr13 20680278 20680379 -81192790 - ERVL LTR ERVL -2263 3501 3404 925 329 56 32 chr13 20680421 20681083 -81192086 - ERVL LTR ERVL -2382 3272 2595 26 30 0 0 chr13 20681605 20681638 -81191531 + AT_rich Low_complexity Low_complexity 1 33 0 1381 130 4 59 chr13 20681697 20681935 -81191234 + AluSg/x SINE Alu 74 298 -14 1402 155 19 0 chr13 20681998 20682256 -81190913 - L1MA9 LINE L1 0 6312 6050 378 254 11 39 chr13 20682262 20682335 -81190834 - L1M4 LINE L1 -3123 3023 2950 2342 50 7 23 chr13 20682335 20682636 -81190533 - AluY SINE Alu -15 296 1 378 254 11 39 chr13 20682636 20682743 -81190426 - L1M4 LINE L1 -3196 2950 2848 3894 195 35 60 chr13 20682786 20683635 -81189534 - L1MD1 LINE L1 -8 6234 5365 1609 146 27 42 chr13 20683635 20683971 -81189198 - L1MA8 LINE L1 -3 6288 5958 3894 195 35 60 chr13 20683971 20685003 -81188166 - L1MD1 LINE L1 -877 5365 4405 27 0 0 0 chr13 20685884 20685911 -81187258 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr13 20686135 20686165 -81187004 + AT_rich Low_complexity Low_complexity 1 30 0 6556 69 21 2 chr13 20686233 20687276 -81185893 + L1PA8 LINE L1 5105 6164 -8 290 317 201 0 chr13 20687444 20687608 -81185561 + MIR SINE MIR 8 204 -58 2482 74 0 0 chr13 20688731 20689041 -81184128 + AluY SINE Alu 2 311 0 11209 161 135 16 chr13 20689149 20691701 -81181468 + L1PBa LINE L1 115 2971 -3892 251 174 14 14 chr13 20691701 20691770 -81181399 + (TA)n Simple_repeat Simple_repeat 2 70 0 5954 99 18 9 chr13 20691781 20692892 -81180277 + L1PB1 LINE L1 5022 6150 -1 1339 216 14 0 chr13 20694410 20694693 -81178476 + MER63 DNA MER1_type 776 1062 0 200 322 85 0 chr13 20695068 20695127 -81178042 - L2 LINE L2 -1 3271 3208 354 299 81 88 chr13 20695625 20696070 -81177099 - HAL1b LINE L1 -699 649 208 21 82 0 0 chr13 20696387 20696436 -81176733 + AT_rich Low_complexity Low_complexity 1 49 0 403 313 16 16 chr13 20697045 20697173 -81175996 + MIR SINE MIR 16 143 -119 290 191 34 56 chr13 20698161 20698250 -81174919 - HAL1 LINE L1 -8 2499 2413 880 260 63 29 chr13 20698252 20698567 -81174602 - HAL1 LINE L1 -683 1824 1499 360 373 62 0 chr13 20698571 20698748 -81174421 - HAL1 LINE L1 -2213 294 107 197 264 42 42 chr13 20699104 20699176 -81173993 + L3 LINE CR1 996 1067 -510 27 62 0 0 chr13 20700563 20700611 -81172558 + AT_rich Low_complexity Low_complexity 1 48 0 1800 225 85 140 chr13 20701230 20701412 -81171757 - HsTC2 DNA Tc2 -744 1154 964 2066 125 41 0 chr13 20701412 20701707 -81171462 - AluSg SINE Alu -3 307 1 1800 225 85 140 chr13 20701707 20701968 -81171201 - HsTC2 DNA Tc2 -934 964 690 2181 110 0 0 chr13 20701968 20702258 -81170911 + AluSq SINE Alu 7 296 -17 1800 225 85 140 chr13 20702258 20703033 -81170136 - HsTC2 DNA Tc2 -1208 690 2 699 244 24 21 chr13 20703095 20703308 -81169861 - L1MB8 LINE L1 0 6178 5961 371 183 73 0 chr13 20705565 20705647 -81167522 - L1M4 LINE L1 -1223 4923 4836 340 254 23 39 chr13 20705644 20705774 -81167395 - L1MEc LINE L1 -3679 2536 2409 * 263 222 0 0 chr13 20705809 20705863 -81167306 - L1MEc LINE L1 -3794 2421 2368 1558 304 68 32 chr13 20705969 20706521 -81166648 - L1MEc LINE L1 -4307 2089 1483 2633 98 35 0 chr13 20706521 20706898 -81166271 - L1PA11 LINE L1 -10 6164 5775 1558 304 68 32 chr13 20706898 20707350 -81165819 - L1MEc LINE L1 -4913 1483 1049 503 375 13 15 chr13 20707445 20707840 -81165329 - L1MEc LINE L1 -5501 895 502 1805 159 10 10 chr13 20708154 20708456 -81164713 - AluSx SINE Alu -10 302 1 291 189 41 41 chr13 20709189 20709311 -81163858 + (TTATA)n Simple_repeat Simple_repeat 4 125 0 500 264 61 6 chr13 20710424 20710587 -81162582 - L1ME3A LINE L1 -8 6162 5991 630 207 17 6 chr13 20710889 20711063 -81162106 + CT-rich Low_complexity Low_complexity 2 177 0 309 261 45 9 chr13 20711758 20711869 -81161300 + L1MC4a LINE L1 5811 5925 -1883 896 209 23 6 chr13 20712126 20712298 -81160871 - MER41D LTR ERV1 -1 556 382 21 36 0 0 chr13 20713185 20713213 -81159956 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 20714672 20714701 -81158468 + AT_rich Low_complexity Low_complexity 1 29 0 654 309 58 38 chr13 20714922 20714945 -81158224 + L1MEc LINE L1 1072 1093 -5303 3254 178 25 2 chr13 20714945 20715534 -81157635 + LTR26 LTR ERV1 1 603 0 654 309 58 38 chr13 20715534 20716168 -81157001 + L1MEc LINE L1 1093 1742 -4654 2099 109 0 0 chr13 20716218 20716494 -81156675 + AluSx SINE Alu 22 297 -15 1529 202 108 19 chr13 20716846 20717207 -81155962 + MSTD LTR MaLR 4 396 0 26 30 0 0 chr13 20718186 20718219 -81154950 + AT_rich Low_complexity Low_complexity 1 33 0 2419 62 3 3 chr13 20719175 20719481 -81153688 - AluY SINE Alu -5 306 1 188 61 61 0 chr13 20719575 20719608 -81153561 + T-rich Low_complexity Low_complexity 2 36 0 194 210 0 113 chr13 20719883 20719945 -81153224 + MER5B DNA MER1_type 1 55 -123 186 427 10 0 chr13 20720173 20720269 -81152900 - L2 LINE L2 -190 3082 2986 1044 234 56 59 chr13 20720638 20720976 -81152193 - MLT1A1 LTR MaLR -28 337 1 195 107 0 0 chr13 20720976 20721004 -81152165 - L2 LINE L2 -695 2619 2592 534 341 166 26 chr13 20721201 20721653 -81151516 + L2 LINE L2 1644 2204 -1110 2101 93 0 36 chr13 20721653 20721955 -81151214 - AluY SINE Alu -20 291 1 534 341 166 26 chr13 20721955 20722109 -81151060 + L2 LINE L2 2204 2335 -979 654 222 0 0 chr13 20722112 20722229 -81150940 - MLT1A1 LTR MaLR -219 146 30 1571 177 64 3 chr13 20722543 20722826 -81150343 + AluJb SINE Alu 3 302 -10 185 35 69 0 chr13 20723460 20723489 -81149680 + A-rich Low_complexity Low_complexity 5 35 0 25 0 0 0 chr13 20724558 20724583 -81148586 + AT_rich Low_complexity Low_complexity 1 25 0 2412 62 0 10 chr13 20725842 20726147 -81147022 + AluY SINE Alu 2 303 -8 206 400 33 0 chr13 20726559 20726649 -81146520 + L3b LINE CR1 1442 1534 -49 1643 157 77 7 chr13 20726651 20726938 -81146231 + AluSx SINE Alu 1 307 -5 239 403 28 0 chr13 20727277 20727458 -81145711 - L2 LINE L2 -10 3303 3118 324 367 23 8 chr13 20727946 20728074 -81145095 + MIR3 SINE MIR 46 175 -33 26 0 0 0 chr13 20729604 20729630 -81143539 + AT_rich Low_complexity Low_complexity 1 26 0 2102 114 0 0 chr13 20729982 20730286 -81142883 + AluSg SINE Alu 1 304 0 1506 201 3 23 chr13 20731822 20732121 -81141048 + AluJo SINE Alu 1 293 -19 1986 104 61 14 chr13 20733812 20734109 -81139060 - AluSx SINE Alu -1 311 1 207 0 0 0 chr13 20735063 20735086 -81138083 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 633 209 8 0 chr13 20735646 20735775 -81137394 + FLAM_C SINE Alu 6 135 -8 214 332 68 68 chr13 20739153 20739373 -81133796 - L2 LINE L2 -835 2479 2260 1748 48 0 9 chr13 20739508 20739735 -81133434 - L1PA4 LINE L1 0 6155 5931 21 36 0 0 chr13 20740499 20740527 -81132642 + AT_rich Low_complexity Low_complexity 1 28 0 721 360 76 11 chr13 20741146 20741526 -81131643 + L3 LINE CR1 563 967 -610 253 250 135 0 chr13 20742983 20743079 -81130090 - MIR SINE MIR -56 206 98 1884 110 45 17 chr13 20743093 20743384 -81129785 - AluSx SINE Alu -13 299 1 291 275 119 9 chr13 20744084 20744193 -81128976 - MIR3 SINE MIR -54 154 34 22 0 0 0 chr13 20746254 20746276 -81126893 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 20747755 20747779 -81125390 + AT_rich Low_complexity Low_complexity 1 24 0 1169 239 99 95 chr13 20752278 20752846 -81120323 - MLT1G LTR MaLR 0 590 21 13846 93 1 0 chr13 20752846 20755582 -81117587 + L1PA7 LINE L1 3413 6154 0 397 296 110 25 chr13 20756085 20756549 -81116620 - L1MEc LINE L1 -4460 1965 1368 216 308 26 51 chr13 20756620 20756698 -81116471 - L3 LINE CR1 -1441 136 61 2163 110 0 7 chr13 20757432 20757742 -81115427 - AluSc SINE Alu -1 308 1 225 339 9 18 chr13 20757876 20757985 -81115184 + L2 LINE L2 352 459 -2855 287 117 0 0 chr13 20758022 20758069 -81115100 - Alu SINE Alu -258 44 5 269 271 0 14 chr13 20758331 20758401 -81114768 + MER5B DNA MER1_type 1 69 -109 366 290 24 16 chr13 20759356 20759480 -81113689 + MIR SINE MIR 30 154 -108 490 207 0 0 chr13 20760012 20760094 -81113075 - AluS SINE Alu -230 82 1 1134 279 23 25 chr13 20760806 20761200 -81111969 - LTR52 LTR ERVL -5 416 24 207 0 0 0 chr13 20762010 20762033 -81111136 + (TG)n Simple_repeat Simple_repeat 1 23 0 311 391 75 0 chr13 20762711 20762872 -81110297 + MIR3 SINE MIR 30 202 -6 295 246 177 15 chr13 20763596 20763726 -81109443 + MIR SINE MIR 75 225 -37 2043 144 8 41 chr13 20763850 20764238 -81108931 + THE1C LTR MaLR 1 375 0 322 397 20 0 chr13 20766108 20766254 -81106915 - L2 LINE L2 -5 3308 3160 2795 13 0 0 chr13 20766353 20766664 -81106505 + AluYa5 SINE Alu 1 311 0 2004 140 10 3 chr13 20767124 20767431 -81105738 - AluSg SINE Alu -1 309 1 283 326 20 34 chr13 20767527 20767674 -81105495 + L2 LINE L2 313 457 -2857 2343 170 50 5 chr13 20768160 20768561 -81104608 + MSTC LTR MaLR 10 428 0 2179 118 0 0 chr13 20769771 20770068 -81103101 + AluSc SINE Alu 1 297 -12 1711 108 4 12 chr13 20770635 20770884 -81102285 + AluSx SINE Alu 61 307 -5 1694 160 41 28 chr13 20770933 20771321 -81101848 + L1MB8 LINE L1 5785 6177 -1 1846 175 112 5 chr13 20773245 20773628 -81099541 + MSTB LTR MaLR 1 424 -2 3168 203 37 37 chr13 20773678 20774669 -81098500 + L1MD1 LINE L1 5012 6017 -225 12545 159 47 17 chr13 20774679 20777025 -81096144 + Tigger1 DNA MER2_type 1 2418 0 1057 222 72 17 chr13 20777025 20777130 -81096039 + L1MD2 LINE L1 6029 6127 -232 222 91 0 0 chr13 20777130 20777163 -81096006 + (CA)n Simple_repeat Simple_repeat 2 34 0 1057 222 72 17 chr13 20777163 20777350 -81095819 + L1MD2 LINE L1 6127 6337 -22 190 159 87 101 chr13 20777449 20777518 -81095651 - MIR SINE MIR -66 142 75 267 31 0 0 chr13 20777726 20777758 -81095411 + (A)n Simple_repeat Simple_repeat 1 32 0 26 64 0 0 chr13 20777812 20777859 -81095310 + AT_rich Low_complexity Low_complexity 1 47 0 438 259 144 15 chr13 20779640 20779841 -81093328 + MIR SINE MIR 2 228 -34 24 0 0 0 chr13 20783596 20783620 -81089549 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 20783990 20784011 -81089158 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr13 20784407 20784453 -81088716 + AT_rich Low_complexity Low_complexity 1 46 0 214 356 167 6 chr13 20785924 20786098 -81087071 + MIR SINE MIR 3 204 -58 2855 184 17 31 chr13 20786587 20786972 -81086197 - L1M3f LINE L1 -4756 572 196 1917 138 27 3 chr13 20786972 20787270 -81085899 - AluSg SINE Alu -2 308 4 2855 184 17 31 chr13 20787270 20787464 -81085705 - L1M3f LINE L1 -5132 196 1 239 227 30 0 chr13 20788079 20788145 -81085024 - MLT1C LTR MaLR -167 300 233 737 174 7 14 chr13 20788197 20788335 -81084834 - MLT1C LTR MaLR -330 137 1 2339 93 0 10 chr13 20788831 20789143 -81084026 + AluY SINE Alu 1 309 -2 213 290 155 45 chr13 20791954 20792109 -81081060 + MIR3 SINE MIR 6 177 -31 2255 83 0 0 chr13 20792351 20792665 -81080504 - AluSc SINE Alu 0 315 2 2546 58 7 0 chr13 20793878 20794186 -81078983 + AluY SINE Alu 1 310 -1 33 43 0 0 chr13 20794619 20794666 -81078503 + AT_rich Low_complexity Low_complexity 1 47 0 314 61 20 0 chr13 20794987 20795036 -81078133 + (TC)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chr13 20795038 20795061 -81078108 + (CA)n Simple_repeat Simple_repeat 2 24 0 289 276 61 0 chr13 20795231 20795329 -81077840 - L2 LINE L2 -33 3239 3136 181 175 0 53 chr13 20796853 20796910 -81076259 + CT-rich Low_complexity Low_complexity 2 55 0 241 331 73 29 chr13 20797418 20797554 -81075615 + L2 LINE L2 3172 3313 0 467 67 45 22 chr13 20797670 20797759 -81075410 + GA-rich Low_complexity Low_complexity 2 92 0 472 258 16 39 chr13 20798668 20798796 -81074373 + L2 LINE L2 3189 3313 0 180 0 0 0 chr13 20799640 20799660 -81073509 + (TA)n Simple_repeat Simple_repeat 1 20 0 1344 210 19 0 chr13 20799848 20800119 -81073050 + MER58B DNA MER1_type 66 341 0 197 359 60 26 chr13 20803259 20803376 -81069793 - L2 LINE L2 -204 3068 2948 2091 187 44 19 chr13 20803484 20803895 -81069274 + MSTB1 LTR MaLR 12 432 0 679 353 56 49 chr13 20804145 20804979 -81068190 - L2 LINE L2 -797 2517 1678 194 314 35 23 chr13 20805043 20805129 -81068040 - MIR SINE MIR 0 262 176 2130 116 3 3 chr13 20806411 20806705 -81066464 + AluSx SINE Alu 1 294 -18 198 313 0 0 chr13 20809314 20809362 -81063807 + L2 LINE L2 3251 3298 -15 207 0 0 0 chr13 20809693 20809716 -81063453 + (A)n Simple_repeat Simple_repeat 1 23 0 305 216 159 13 chr13 20810117 20810284 -81062885 + LTR40c LTR ERVL 198 384 -78 26 30 0 0 chr13 20810511 20810544 -81062625 + AT_rich Low_complexity Low_complexity 1 33 0 617 279 161 50 chr13 20810619 20811171 -81061998 + L2 LINE L2 2065 2689 -625 2082 118 0 3 chr13 20811171 20811460 -81061709 - AluSx SINE Alu -24 288 1 617 279 161 50 chr13 20811460 20811502 -81061667 + L2 LINE L2 2689 2725 -589 243 267 70 23 chr13 20811758 20811844 -81061325 - L2 LINE L2 -2 3270 3181 25 31 0 0 chr13 20812585 20812617 -81060552 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr13 20813012 20813055 -81060114 + AT_rich Low_complexity Low_complexity 1 43 0 1254 211 77 52 chr13 20813486 20813851 -81059318 + MLT1A2 LTR MaLR 1 374 0 201 378 109 29 chr13 20814434 20814746 -81058423 + L2 LINE L2 2926 3262 -10 259 343 38 59 chr13 20814963 20815081 -81058088 - MIR SINE MIR -64 144 40 203 171 0 24 chr13 20815155 20815196 -81057973 + GA-rich Low_complexity Low_complexity 4 43 0 561 252 77 13 chr13 20815215 20815370 -81057799 - MIR SINE MIR -43 219 55 448 315 33 5 chr13 20816011 20816195 -81056974 + MER5A DNA MER1_type 1 189 0 2811 52 0 0 chr13 20816580 20816929 -81056240 - L1PA5 LINE L1 -2 6152 5804 196 337 12 12 chr13 20818072 20818158 -81055011 - MIR3 SINE MIR -9 199 114 21 71 0 0 chr13 20818618 20818660 -81054509 + AT_rich Low_complexity Low_complexity 1 42 0 310 292 91 32 chr13 20818814 20819033 -81054136 + L1MCc LINE L1 24 255 -6168 361 295 36 30 chr13 20819044 20819210 -81053959 + L1MCc LINE L1 303 469 -5954 225 154 0 0 chr13 20821369 20821408 -81051761 + CT-rich Low_complexity Low_complexity 4 42 0 23 0 0 0 chr13 20823834 20823857 -81049312 + AT_rich Low_complexity Low_complexity 1 23 0 312 218 0 0 chr13 20823916 20824003 -81049166 + CT-rich Low_complexity Low_complexity 3 89 0 198 398 21 0 chr13 20824524 20824617 -81048552 - MIR3 SINE MIR 0 208 114 2365 118 39 14 chr13 20824761 20825116 -81048053 - THE1B LTR MaLR 0 364 1 27 49 0 0 chr13 20825169 20825210 -81047959 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr13 20825697 20825727 -81047442 + AT_rich Low_complexity Low_complexity 1 30 0 353 297 30 0 chr13 20826438 20826539 -81046630 + MER5A DNA MER1_type 9 112 -77 645 225 87 6 chr13 20826799 20826948 -81046221 - MER5A DNA MER1_type -2 187 21 1998 94 0 4 chr13 20826948 20827213 -81045956 - AluY SINE Alu -19 292 29 645 225 87 6 chr13 20827213 20827236 -81045933 - MER5A DNA MER1_type -168 21 1 763 309 40 16 chr13 20827789 20828038 -81045131 + MIR SINE MIR 6 260 -2 277 310 20 0 chr13 20828045 20828145 -81045024 + (CATATA)n Simple_repeat Simple_repeat 5 106 0 365 249 116 26 chr13 20828179 20828368 -81044801 + Charlie7 DNA MER1_type 400 605 -2007 1404 244 30 30 chr13 20830670 20831137 -81042032 - MLT1C LTR MaLR 0 467 1 2518 226 33 68 chr13 20832247 20833166 -81040003 + L1ME1 LINE L1 5279 6161 -5 1384 117 216 9 chr13 20833185 20833416 -81039753 + AluSg1 SINE Alu 1 279 -30 243 0 0 0 chr13 20833423 20833450 -81039719 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3916 158 22 7 chr13 20833627 20834366 -81038803 + L1MA8 LINE L1 5542 6291 0 2316 35 0 7 chr13 20835258 20835544 -81037625 - L1PA4 LINE L1 -1 6154 5871 315 244 9 61 chr13 20837409 20837524 -81035645 - L1MC4 LINE L1 -1320 6722 6614 1174 208 6 45 chr13 20840542 20840879 -81032290 - MER33 DNA MER1_type 0 324 1 297 294 14 82 chr13 20841792 20841938 -81031231 - MIR3 SINE MIR -11 197 62 332 117 0 17 chr13 20842812 20842872 -81030297 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 182 37 37 0 chr13 20842866 20842893 -81030276 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 * 1882 152 26 0 chr13 20842905 20843207 -81029962 - AluSx SINE Alu -2 310 1 2006 136 26 0 chr13 20843459 20843761 -81029408 - AluSx SINE Alu -2 310 1 473 329 80 13 chr13 20843788 20844013 -81029156 + L2 LINE L2 2652 2891 -423 434 285 75 25 chr13 20844134 20844334 -81028835 + L2 LINE L2 3104 3313 0 259 294 76 0 chr13 20844773 20844865 -81028304 + MIR SINE MIR 132 230 -32 1051 196 14 10 chr13 20846828 20847150 -81026019 + MLT1B LTR MaLR 1 390 0 2174 250 82 44 chr13 20847152 20848542 -81024627 + L1ME LINE L1 42 1460 -4620 957 172 0 0 chr13 20848546 20848697 -81024472 + AluJb SINE Alu 147 297 -15 506 280 50 15 chr13 20848697 20848897 -81024272 + L1ME LINE L1 1497 1703 -4558 380 294 78 38 chr13 20849068 20849464 -81023705 + L1MDa LINE L1 1914 2322 -4218 340 136 168 101 chr13 20849472 20849590 -81023579 + MLT1E2 LTR MaLR 1 197 -457 822 242 44 16 chr13 20849648 20849987 -81023182 + MLT1D LTR MaLR 125 502 -3 33 0 0 0 chr13 20850982 20851015 -81022154 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr13 20851409 20851435 -81021734 + AT_rich Low_complexity Low_complexity 1 26 0 708 178 0 39 chr13 20851513 20851642 -81021527 - FLAM_C SINE Alu -16 127 4 366 331 50 7 chr13 20851801 20851940 -81021229 - MIR SINE MIR -115 147 3 387 277 72 63 chr13 20853135 20853261 -81019908 + L1MC4a LINE L1 5432 5555 -566 1700 166 20 20 chr13 20853261 20853563 -81019606 - AluJo SINE Alu -10 302 1 387 277 72 63 chr13 20853563 20853888 -81019281 + L1MC4a LINE L1 5555 5790 -331 5993 201 94 36 chr13 20854621 20855634 -81017535 + L1MB3 LINE L1 862 1814 -4568 2028 105 0 18 chr13 20855634 20855919 -81017250 + AluSg SINE Alu 11 290 -20 5993 201 94 36 chr13 20855919 20857551 -81015618 + L1MB3 LINE L1 1814 3667 -2715 3752 215 32 15 chr13 20857551 20859718 -81013451 + L1MB3 LINE L1 4024 6418 -1 186 43 0 0 chr13 20860293 20860316 -81012853 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 68 0 0 chr13 20860752 20860796 -81012373 + AT_rich Low_complexity Low_complexity 1 44 0 397 311 49 37 chr13 20861757 20861921 -81011248 - L2 LINE L2 -3 3269 3104 2547 202 55 10 chr13 20862080 20862676 -81010493 + L1 LINE L1 4043 4669 -1477 216 0 0 0 chr13 20862676 20862700 -81010469 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2547 202 55 10 chr13 20862700 20862721 -81010448 + L1 LINE L1 4669 4688 -1458 1452 211 0 0 chr13 20862721 20862986 -81010183 + AluJo SINE Alu 22 286 -26 349 236 21 14 chr13 20862993 20863094 -81010075 - MLT1H1 LTR MaLR -424 131 45 282 311 121 15 chr13 20863128 20863260 -81009909 - L2 LINE L2 -823 2491 2346 573 306 83 32 chr13 20863435 20863713 -81009456 - L2 LINE L2 -19 3294 3003 251 428 59 11 chr13 20863792 20863979 -81009190 + L2 LINE L2 2895 3090 -182 745 99 0 0 chr13 20864273 20864384 -81008785 + L1MA5A LINE L1 6179 6289 -8 29 0 0 0 chr13 20865523 20865552 -81007617 + AT_rich Low_complexity Low_complexity 1 29 0 1832 165 0 13 chr13 20866437 20866740 -81006429 - AluJb SINE Alu -13 299 1 284 68 0 23 chr13 20866929 20866973 -81006196 + (TAA)n Simple_repeat Simple_repeat 2 44 0 223 238 0 32 chr13 20866996 20867059 -81006110 - MIR SINE MIR -31 231 171 27 49 0 0 chr13 20867160 20867201 -81005968 + AT_rich Low_complexity Low_complexity 1 41 0 1477 193 0 7 chr13 20867201 20867475 -81005694 - AluJb SINE Alu -32 280 9 21 0 0 0 chr13 20867494 20867515 -81005654 + AT_rich Low_complexity Low_complexity 1 21 0 497 255 33 71 chr13 20868183 20868367 -81004802 - MER5B DNA MER1_type -1 177 1 254 224 17 0 chr13 20868612 20868670 -81004499 + MER81 DNA DNA 24 82 -32 2184 117 0 0 chr13 20869212 20869511 -81003658 - AluSg SINE Alu -11 299 1 309 344 61 28 chr13 20871518 20871730 -81001439 + MIR SINE MIR 2 220 -42 199 326 153 68 chr13 20872101 20872395 -81000774 - L2 LINE L2 -5 3267 2949 526 111 0 0 chr13 20872832 20872904 -81000265 + FLAM SINE Alu 54 125 -18 287 259 155 17 chr13 20873250 20873366 -80999803 + L2 LINE L2 3173 3304 -9 21 0 0 0 chr13 20873418 20873439 -80999730 + AT_rich Low_complexity Low_complexity 1 21 0 779 250 0 27 chr13 20874899 20875083 -80998086 + MER8 DNA MER2_type 1 179 -60 387 194 0 0 chr13 20875059 20875121 -80998048 + MER2 DNA MER2_type 283 344 -1 * 234 91 0 0 chr13 20875124 20875157 -80998012 + (TA)n Simple_repeat Simple_repeat 1 33 0 264 278 0 0 chr13 20875157 20875247 -80997922 - L1MC4 LINE L1 -1339 6703 6614 263 333 76 56 chr13 20875268 20875412 -80997757 - MIR SINE MIR -111 151 5 40 0 0 0 chr13 20876033 20876073 -80997096 + AT_rich Low_complexity Low_complexity 1 40 0 2244 90 0 10 chr13 20877789 20878089 -80995080 - AluY SINE Alu -14 297 1 304 256 128 39 chr13 20878301 20878457 -80994712 + MIR SINE MIR 18 187 -75 856 232 6 0 chr13 20879055 20879223 -80993946 - FAM SINE Alu -6 169 1 21 82 0 0 chr13 20879390 20879439 -80993730 + AT_rich Low_complexity Low_complexity 1 49 0 232 326 22 11 chr13 20880667 20880756 -80992413 - L2 LINE L2 -240 3032 2943 2534 208 35 2 chr13 20880963 20881502 -80991667 - L1MD3 LINE L1 -10 7985 7429 393 250 35 17 chr13 20881507 20881623 -80991546 - MLT1F1 LTR MaLR -447 120 3 1753 310 50 73 chr13 20881625 20882388 -80990781 - L1MD3 LINE L1 -717 7307 6560 365 360 139 35 chr13 20882420 20882795 -80990374 - L2 LINE L2 0 3272 2859 640 308 66 9 chr13 20883062 20883289 -80989880 - MIR SINE MIR 0 262 23 911 339 27 25 chr13 20887348 20887749 -80985420 + LTR16A LTR ERVL 16 417 -33 2227 298 29 22 chr13 20890161 20890761 -80982408 + L1MEc LINE L1 78 687 -5709 1864 135 6 49 chr13 20890761 20891086 -80982083 + AluSx SINE Alu 1 311 -1 2227 298 29 22 chr13 20891086 20891342 -80981827 + L1MEc LINE L1 687 940 -5456 773 269 77 67 chr13 20891353 20891948 -80981221 + L1MEc LINE L1 1038 1638 -4758 5690 254 59 21 chr13 20891954 20894108 -80979061 + L1M4 LINE L1 2795 5031 -1115 5854 207 40 7 chr13 20894108 20896623 -80976546 + L1PA7 LINE L1 2087 4517 -1637 207 0 0 0 chr13 20896623 20896646 -80976523 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5854 207 40 7 chr13 20896646 20897271 -80975898 + L1PA7 LINE L1 4517 5120 -1034 5854 66 3 0 chr13 20897271 20898002 -80975167 + L1PA7 LINE L1 5411 6152 -2 5854 207 40 7 chr13 20898002 20898031 -80975138 + L1PA7 LINE L1 5120 6152 -2 5488 125 14 0 chr13 20898043 20898883 -80974286 + L1PA13 LINE L1 5312 6163 0 * 10747 201 22 1 chr13 20898874 20900233 -80972936 + L1P4 LINE L1 3025 4448 -1713 378 0 0 0 chr13 20900233 20900275 -80972894 + (CA)n Simple_repeat Simple_repeat 1 42 0 10747 201 22 1 chr13 20900275 20901317 -80971852 + L1P4 LINE L1 4448 5467 -694 2188 80 13 40 chr13 20901317 20901691 -80971478 - L1PA3 LINE L1 0 6155 5792 384 210 145 16 chr13 20902098 20902222 -80970947 + MIR SINE MIR 86 225 -37 203 125 25 0 chr13 20902239 20902279 -80970890 + (TTG)n Simple_repeat Simple_repeat 2 42 0 241 245 0 0 chr13 20902533 20902586 -80970583 + MIR SINE MIR 71 123 -139 242 109 0 43 chr13 20903132 20903178 -80969991 - L1MB7 LINE L1 -9 6175 6132 21 36 0 0 chr13 20903365 20903393 -80969776 + AT_rich Low_complexity Low_complexity 1 28 0 643 352 39 21 chr13 20903854 20904189 -80968980 - L3 LINE CR1 -9 1568 1228 1325 68 11 0 chr13 20905012 20905188 -80967981 + L1PA4 LINE L1 5978 6155 0 181 292 46 15 chr13 20905558 20905623 -80967546 + L2 LINE L2 2583 2649 -665 336 48 0 0 chr13 20905709 20905751 -80967418 + (CA)n Simple_repeat Simple_repeat 1 42 0 547 329 114 30 chr13 20906343 20906953 -80966216 + L2 LINE L2 2633 3298 -15 2272 101 0 13 chr13 20907055 20907362 -80965807 - AluSg SINE Alu -7 303 1 24 32 0 0 chr13 20907467 20907498 -80965671 + AT_rich Low_complexity Low_complexity 1 31 0 787 303 50 3 chr13 20907605 20907905 -80965264 - MER110 LTR ERV1 -12 479 166 334 300 56 50 chr13 20908171 20908351 -80964818 - L1MEd LINE L1 -4878 1241 1061 330 382 36 18 chr13 20909278 20909503 -80963666 - L2 LINE L2 -492 2822 2594 511 210 17 0 chr13 20909528 20909647 -80963522 + MER3 DNA MER1_type 85 205 -4 22 35 0 0 chr13 20911576 20911605 -80961564 + AT_rich Low_complexity Low_complexity 1 29 0 396 0 0 0 chr13 20912138 20912182 -80960987 + (TG)n Simple_repeat Simple_repeat 2 45 0 34 55 0 0 chr13 20912215 20912270 -80960899 + AT_rich Low_complexity Low_complexity 1 55 0 29 47 0 0 chr13 20912741 20912784 -80960385 + AT_rich Low_complexity Low_complexity 1 43 0 27 62 0 0 chr13 20913704 20913752 -80959417 + AT_rich Low_complexity Low_complexity 1 48 0 892 115 0 8 chr13 20914463 20914582 -80958587 + AluJb SINE Alu 1 120 -192 266 0 29 0 chr13 20914582 20914616 -80958553 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr13 20915448 20915469 -80957700 + (TA)n Simple_repeat Simple_repeat 1 21 0 267 308 93 19 chr13 20915752 20915859 -80957310 + L2 LINE L2 3154 3268 -4 228 67 0 0 chr13 20916119 20916149 -80957020 + (TC)n Simple_repeat Simple_repeat 1 30 0 590 308 37 7 chr13 20916536 20916661 -80956508 + L1ME3A LINE L1 3609 3729 -2417 1791 49 9 0 chr13 20916661 20916886 -80956283 + L1PA7 LINE L1 5920 6146 -8 590 308 37 7 chr13 20916886 20917085 -80956084 + L1ME3A LINE L1 3729 3952 -2194 969 279 75 18 chr13 20917259 20917711 -80955458 + L1ME3A LINE L1 5692 6169 -1 14872 24 6 0 chr13 20917910 20920433 -80952736 + L1PA3 LINE L1 3618 6147 -8 34 0 0 0 chr13 20920643 20920677 -80952492 + AT_rich Low_complexity Low_complexity 1 34 0 228 111 0 0 chr13 20921310 20921346 -80951823 + (T)n Simple_repeat Simple_repeat 1 36 0 727 247 44 6 chr13 20926778 20926960 -80946209 - MER5A DNA MER1_type 0 189 1 253 261 15 15 chr13 20927250 20927315 -80945854 - MIR3 SINE MIR -18 190 126 551 296 19 51 chr13 20927445 20927661 -80945508 - MIR SINE MIR 0 262 54 277 251 104 67 chr13 20927936 20928107 -80945062 + MIR SINE MIR 20 189 -73 2224 124 96 15 chr13 20928299 20928695 -80944474 + MSTA LTR MaLR 1 428 0 815 92 77 15 chr13 20930340 20930470 -80942699 + L1PA11 LINE L1 6037 6174 0 25 31 0 0 chr13 20930624 20930656 -80942513 + AT_rich Low_complexity Low_complexity 1 32 0 1068 165 30 0 chr13 20931172 20931372 -80941797 + L1PA13 LINE L1 5958 6163 0 332 259 28 19 chr13 20932126 20932234 -80940935 - MIR SINE MIR -26 236 128 222 208 0 0 chr13 20933326 20933379 -80939790 + (TA)n Simple_repeat Simple_repeat 2 54 0 224 294 0 0 chr13 20934102 20934153 -80939016 + L2 LINE L2 3214 3264 -8 235 310 10 50 chr13 20934354 20934454 -80938715 - L3 LINE CR1 -2 1575 1480 237 308 9 28 chr13 20935559 20935666 -80937503 - MIR SINE MIR -113 149 45 21 36 0 0 chr13 20935744 20935772 -80937397 + AT_rich Low_complexity Low_complexity 1 28 0 252 209 0 0 chr13 20935841 20935884 -80937285 + MIR SINE MIR 49 91 -171 26 0 0 0 chr13 20936670 20936696 -80936473 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr13 20937597 20937625 -80935544 + AT_rich Low_complexity Low_complexity 1 28 0 309 89 0 0 chr13 20938091 20938136 -80935033 + (TG)n Simple_repeat Simple_repeat 2 46 0 216 111 0 0 chr13 20939414 20939450 -80933719 + (TA)n Simple_repeat Simple_repeat 2 37 0 414 261 83 85 chr13 20941889 20942394 -80930775 + L1M4 LINE L1 3839 4342 -1804 35 71 0 0 chr13 20942433 20942503 -80930666 + AT_rich Low_complexity Low_complexity 1 70 0 1488 300 167 24 chr13 20942719 20943480 -80929689 + L2 LINE L2 611 1480 -1834 325 330 25 0 chr13 20943486 20943604 -80929565 + L2 LINE L2 2018 2138 -1176 1400 98 0 5 chr13 20943696 20943899 -80929270 - HUERS-P3b LTR ERV1 -2443 4975 4774 5155 22 0 0 chr13 20943911 20944507 -80928662 - L1PA3 LINE L1 -3 6152 5557 915 19 0 0 chr13 20944507 20944613 -80928556 + L1PA3 LINE L1 5476 5581 -574 564 283 130 26 chr13 20945391 20945621 -80927548 + MIR SINE MIR 6 259 -3 1272 119 73 36 chr13 20945966 20946185 -80926984 + MER30 DNA MER1_type 4 230 0 236 280 144 41 chr13 20946985 20947256 -80925913 - L1MC/D LINE L1 -2211 5597 5299 286 332 112 6 chr13 20948142 20948358 -80924811 - L1MC/D LINE L1 -1894 4252 4015 342 366 52 6 chr13 20948609 20948781 -80924388 - L1M4 LINE L1 -1982 4164 3985 26 30 0 0 chr13 20949604 20949637 -80923532 + AT_rich Low_complexity Low_complexity 1 33 0 1054 231 106 30 chr13 20949768 20950239 -80922930 + Charlie4a DNA MER1_type 2 508 0 2153 123 0 7 chr13 20950350 20950660 -80922509 + AluSx SINE Alu 1 308 -4 222 118 0 0 chr13 20950895 20950929 -80922240 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 259 313 0 12 chr13 20950963 20951043 -80922126 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 30 45 0 0 chr13 20951070 20951114 -80922055 + AT_rich Low_complexity Low_complexity 1 44 0 1306 146 150 33 chr13 20951487 20951761 -80921408 + AluJo SINE Alu 5 310 -2 596 227 64 7 chr13 20951761 20951902 -80921267 + AluJb SINE Alu 134 282 -30 416 102 0 0 chr13 20952157 20952216 -80920953 + MADE1 DNA Mariner 22 80 0 549 88 0 0 chr13 20953562 20953642 -80919527 + (TC)n Simple_repeat Simple_repeat 1 80 0 285 29 0 0 chr13 20954174 20954208 -80918961 + (TG)n Simple_repeat Simple_repeat 1 34 0 258 267 0 0 chr13 20954264 20954324 -80918845 + L2 LINE L2 3212 3271 -1 189 0 0 0 chr13 20955088 20955109 -80918060 + (TA)n Simple_repeat Simple_repeat 1 21 0 267 308 93 19 chr13 20955392 20955499 -80917670 + L2 LINE L2 3154 3268 -4 228 67 0 0 chr13 20955759 20955789 -80917380 + (TC)n Simple_repeat Simple_repeat 1 30 0 495 128 202 0 chr13 20956163 20956257 -80916912 + AluSp/q SINE Alu 192 304 -9 289 339 28 9 chr13 20957379 20957488 -80915681 - L2 LINE L2 -15 3298 3188 1065 168 173 0 chr13 20957592 20957818 -80915351 + MSTA LTR MaLR 1 265 -163 8814 153 30 11 chr13 20957828 20959258 -80913911 + L1MA2 LINE L1 3566 5074 -1230 1655 182 17 13 chr13 20959258 20959560 -80913609 + AluJb SINE Alu 1 303 -9 8814 153 30 11 chr13 20959560 20960815 -80912354 + L1MA2 LINE L1 5074 6304 0 201 333 0 0 chr13 20960828 20960888 -80912281 + MIR SINE MIR 203 262 0 192 325 55 12 chr13 20961267 20961365 -80911804 + MIR SINE MIR 57 162 -46 197 333 89 33 chr13 20961514 20961604 -80911565 + MIR SINE MIR 53 147 -115 223 188 0 47 chr13 20961717 20961781 -80911388 + T-rich Low_complexity Low_complexity 1 61 0 30 83 0 0 chr13 20961787 20961859 -80911310 + AT_rich Low_complexity Low_complexity 1 72 0 24 0 0 0 chr13 20962218 20962242 -80910927 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr13 20963291 20963319 -80909850 + AT_rich Low_complexity Low_complexity 1 28 0 2122 130 3 0 chr13 20963344 20963643 -80909526 - AluSx SINE Alu -10 302 3 311 268 25 19 chr13 20963680 20963837 -80909332 + L1M4 LINE L1 2860 3017 -3129 254 298 125 15 chr13 20963870 20964199 -80908970 + L1M4 LINE L1 3159 3523 -2623 1904 220 5 23 chr13 20964202 20964598 -80908571 + L1MA4A LINE L1 2 390 -6459 * 12939 205 38 35 chr13 20964597 20967310 -80905859 + L1MA4A LINE L1 2038 4743 -2262 2371 46 0 3 chr13 20967310 20967637 -80905532 - AluY SINE Alu 0 328 3 12939 205 38 35 chr13 20967637 20967922 -80905247 + L1MA4A LINE L1 4743 5026 -1979 1414 101 0 10 chr13 20967922 20968129 -80905040 + L1PA13 LINE L1 5958 6162 -1 12939 205 38 35 chr13 20968129 20970067 -80903102 + L1MA4A LINE L1 5026 7000 -5 5886 213 48 45 chr13 20970101 20970251 -80902918 + L1MA8 LINE L1 3508 3656 -2635 1356 164 13 0 chr13 20970251 20970483 -80902686 + MER46A DNA MER2_type 2 236 0 5886 213 48 45 chr13 20970483 20973106 -80900063 + L1MA8 LINE L1 3656 6287 -4 973 188 0 0 chr13 20973118 20973278 -80899891 + AluJb SINE Alu 130 289 -23 452 205 43 43 chr13 20973299 20973460 -80899709 + L1M4 LINE L1 5188 5348 -798 22 0 0 0 chr13 20973516 20973538 -80899631 + AT_rich Low_complexity Low_complexity 1 22 0 978 226 67 15 chr13 20973567 20973908 -80899261 + L1ME LINE L1 4963 5321 -825 220 297 13 26 chr13 20974612 20974767 -80898402 + T-rich Low_complexity Low_complexity 3 155 0 31 0 0 0 chr13 20975261 20975292 -80897877 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr13 20975867 20975919 -80897250 + AT_rich Low_complexity Low_complexity 1 52 0 1863 122 0 21 chr13 20976097 20976376 -80896793 - AluSx SINE Alu -16 296 24 1328 273 71 64 chr13 20978094 20979093 -80894076 + L1ME3A LINE L1 4269 5291 -873 1676 155 9 31 chr13 20979093 20979410 -80893759 - AluJo SINE Alu -2 310 1 1328 273 71 64 chr13 20979410 20979589 -80893580 + L1ME3A LINE L1 5291 5467 -697 920 234 216 48 chr13 20979639 20980249 -80892920 + L1ME3A LINE L1 5456 6168 -2 2560 152 4 6 chr13 20980347 20980822 -80892347 + L1P LINE L1 3021 3494 -2652 4022 105 12 25 chr13 20980822 20981458 -80891711 + L1PA10 LINE L1 5534 6163 -5 2352 48 20 0 chr13 20981709 20981881 -80891288 - AluY SINE Alu -10 301 119 225 0 0 0 chr13 20981881 20981906 -80891263 + (TA)n Simple_repeat Simple_repeat 1 25 0 2352 48 20 0 chr13 20981906 20982028 -80891141 - AluY SINE Alu -192 119 1 245 377 58 34 chr13 20982472 20982679 -80890490 - L2 LINE L2 -554 2760 2549 200 182 0 0 chr13 20982993 20983026 -80890143 + GA-rich Low_complexity Low_complexity 2 34 0 1627 149 27 0 chr13 20984302 20984598 -80888571 + L1MA4 LINE L1 5992 6295 -5 463 301 129 31 chr13 20984600 20985084 -80888085 + L1ME LINE L1 5327 5868 -302 2429 74 0 0 chr13 20985186 20985497 -80887672 + L1PA7 LINE L1 5821 6131 -23 7169 139 32 23 chr13 20985531 20986816 -80886353 - HSMAR2 DNA Mariner -4 1298 2 1410 224 62 40 chr13 20987870 20988325 -80884844 + MER101 LTR ERV1 10 474 0 213 302 47 23 chr13 20988431 20988517 -80884652 - L3 LINE CR1 -3 1574 1487 324 0 0 0 chr13 20988932 20988968 -80884201 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 288 0 0 0 chr13 20989559 20989591 -80883578 + (TG)n Simple_repeat Simple_repeat 2 33 0 2760 22 0 0 chr13 20990269 20990584 -80882585 + AluYb8 SINE Alu 1 315 -3 21 36 0 0 chr13 20993886 20993914 -80879255 + AT_rich Low_complexity Low_complexity 1 28 0 5765 181 5 8 chr13 20994439 20996107 -80877062 + L1MA6 LINE L1 4635 6298 -2 1841 224 94 22 chr13 20996864 20997363 -80875806 + MLT2B3 LTR ERVL 1 535 -19 305 47 23 0 chr13 20997363 20997406 -80875763 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 351 44 0 0 chr13 20997411 20997456 -80875713 + (TG)n Simple_repeat Simple_repeat 2 46 0 1920 124 0 46 chr13 20997503 20997810 -80875359 + AluSg SINE Alu 1 293 -17 2305 95 0 3 chr13 20998137 20998442 -80874727 + AluY SINE Alu 1 304 -7 267 320 50 20 chr13 20998870 20999070 -80874099 + L1ME LINE L1 5615 5820 -301 304 293 171 0 chr13 20999383 20999506 -80873663 + L3 LINE CR1 1041 1184 -393 640 303 29 0 chr13 20999639 20999814 -80873355 + LTR16A LTR ERVL 16 195 -255 3168 149 10 14 chr13 20999923 21000418 -80872751 - MER1A DNA MER1_type 0 529 37 209 277 0 0 chr13 21000935 21000982 -80872187 + L3 LINE CR1 844 890 -687 476 252 0 84 chr13 21001022 21001165 -80872004 + MLT1A1 LTR MaLR 3 133 -521 481 275 5 9 chr13 21001233 21001418 -80871751 - MLT1E1 LTR MaLR -211 415 284 611 99 0 9 chr13 21001438 21001549 -80871620 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 310 222 14 0 chr13 21001681 21001753 -80871416 - L1MD3 LINE L1 -19 7976 7904 239 247 26 13 chr13 21001949 21002026 -80871143 - L1MC3 LINE L1 -1799 5986 5909 1805 162 139 18 chr13 21002026 21002408 -80870761 + MSTA LTR MaLR 1 428 0 549 222 71 10 chr13 21002420 21002618 -80870551 - L1MC3 LINE L1 -768 5474 5265 * 646 236 25 105 chr13 21002604 21002918 -80870251 + L1M4 LINE L1 3383 3671 -2475 559 224 43 50 chr13 21002952 21003113 -80870056 + MLT1A1 LTR MaLR 206 365 0 357 262 65 62 chr13 21003157 21003282 -80869887 - L1ME LINE L1 -5254 1276 1153 1446 157 125 20 chr13 21003282 21003587 -80869582 - MER44D DNA MER2_type -1 608 2 357 262 65 62 chr13 21003587 21003736 -80869433 - L1ME LINE L1 -5377 1153 1001 1619 240 37 21 chr13 21003783 21004166 -80869003 + MSTD LTR MaLR 6 394 -2 307 249 99 99 chr13 21004616 21004817 -80868352 - L1ME LINE L1 -6159 562 362 635 311 21 13 chr13 21005354 21005589 -80867580 - MIR SINE MIR -6 256 20 1926 153 0 0 chr13 21006842 21007145 -80866024 - AluSq SINE Alu 0 305 3 250 240 184 9 chr13 21007152 21007369 -80865800 - L1ME LINE L1 -3960 2580 2326 355 250 196 33 chr13 21007396 21007580 -80865589 - L1ME LINE L1 -4763 1777 1564 515 75 124 31 chr13 21007779 21007940 -80865229 + CT-rich Low_complexity Low_complexity 3 178 0 876 186 62 0 chr13 21007968 21008129 -80865040 - FAM SINE Alu -2 173 3 777 305 24 71 chr13 21008174 21008712 -80864457 - L1ME LINE L1 -5235 1295 783 312 328 38 57 chr13 21008971 21009233 -80863936 - L1ME LINE L1 -6204 336 80 263 243 27 0 chr13 21009469 21009543 -80863626 + (TA)n Simple_repeat Simple_repeat 2 77 0 2998 176 26 11 chr13 21009580 21010149 -80863020 - L1PA16 LINE L1 -9 6157 5580 26 64 0 0 chr13 21010304 21010351 -80862818 + AT_rich Low_complexity Low_complexity 1 47 0 684 255 99 108 chr13 21011257 21011712 -80861457 - MLT1J LTR MaLR -60 451 1 180 77 0 0 chr13 21011738 21011764 -80861405 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 613 130 0 116 chr13 21012260 21012406 -80860763 + LTR7 LTR ERV1 3 131 -319 18931 88 18 31 chr13 21012417 21015325 -80857844 + HERVH LTR ERV1 125 2995 -4718 5990 82 15 2 chr13 21015304 21016147 -80857022 + HERVH LTR ERV1 3140 3993 -3720 * 4422 136 0 1 chr13 21016150 21016812 -80856357 + HERVH LTR ERV1 4489 5149 -2564 1337 130 28 9 chr13 21016813 21017029 -80856140 + HERVH LTR ERV1 5600 5819 -1894 * 2405 95 48 13 chr13 21017027 21017406 -80855763 + HERVH LTR ERV1 7322 7713 0 2634 70 119 5 chr13 21017406 21017808 -80855361 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr13 21018001 21018022 -80855147 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 21018424 21018445 -80854724 + AT_rich Low_complexity Low_complexity 1 21 0 6043 172 111 76 chr13 21018495 21019045 -80854124 + L1MC3 LINE L1 6051 6580 -1205 1705 194 69 75 chr13 21019045 21019362 -80853807 + MLT1D LTR MaLR 1 315 -190 651 78 0 0 chr13 21019362 21019452 -80853717 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 1705 194 69 75 chr13 21019452 21019639 -80853530 + MLT1D LTR MaLR 315 502 -3 6043 172 111 76 chr13 21019639 21020112 -80853057 + L1MC3 LINE L1 6580 7035 -750 266 243 87 29 chr13 21020112 21020215 -80852954 + MLT1F1 LTR MaLR 35 143 -424 6043 172 111 76 chr13 21020215 21020739 -80852430 + L1MC3 LINE L1 7035 7759 -26 1006 90 0 14 chr13 21020739 21020883 -80852286 + L1PA8 LINE L1 6022 6163 -9 206 316 38 68 chr13 21021441 21021574 -80851595 + MER5A DNA MER1_type 35 163 -26 260 207 17 17 chr13 21022529 21022587 -80850582 - MIR3 SINE MIR -23 185 128 415 241 200 0 chr13 21022797 21022942 -80850227 + MLT2E LTR ERVL 19 192 -436 394 292 91 76 chr13 21023578 21023961 -80849208 + MLT1J1 LTR MaLR 51 439 -7 838 288 4 18 chr13 21024147 21024373 -80848796 + MER58A DNA MER1_type 2 224 0 4529 148 27 33 chr13 21024558 21025428 -80847741 + L1MA7 LINE L1 5065 5935 -356 2474 56 7 0 chr13 21025428 21025732 -80847437 - AluY SINE Alu -5 306 1 4529 148 27 33 chr13 21025732 21025882 -80847287 + L1MA7 LINE L1 5935 6084 -207 2380 256 83 39 chr13 21026113 21027088 -80846081 + L1MC4 LINE L1 6621 7638 -404 * 3034 288 80 30 chr13 21027058 21027699 -80845470 + L1MEc LINE L1 5 612 -5784 276 30 0 0 chr13 21027699 21027732 -80845437 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3034 288 80 30 chr13 21027732 21028742 -80844427 + L1MEc LINE L1 612 1739 -4657 307 330 132 35 chr13 21028857 21029260 -80843909 - L1M4 LINE L1 -1115 5031 4590 1267 257 36 70 chr13 21029594 21030181 -80842988 - L1ME3A LINE L1 -9 6161 5595 313 300 140 33 chr13 21030935 21031085 -80842084 - MIR SINE MIR -6 256 91 2236 119 3 0 chr13 21032027 21032338 -80840831 - AluSx SINE Alu 0 312 1 487 308 96 8 chr13 21032495 21032735 -80840434 + MIR SINE MIR 2 262 0 1882 100 100 6 chr13 21033637 21033680 -80839489 - L1PA10 LINE L1 0 6172 6134 378 0 0 0 chr13 21033680 21033722 -80839447 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 1882 100 100 6 chr13 21033722 21034009 -80839160 - L1PA10 LINE L1 -38 6134 5826 9545 111 12 16 chr13 21034047 21036039 -80837130 + L1P4 LINE L1 3835 5807 -361 223 343 128 0 chr13 21036665 21036767 -80836402 + L2 LINE L2 3199 3313 0 252 170 0 0 chr13 21038050 21038103 -80835066 + T-rich Low_complexity Low_complexity 3 55 0 1890 113 60 0 chr13 21038199 21038491 -80834678 + AluSx SINE Alu 1 308 0 322 308 0 0 chr13 21038614 21038718 -80834451 - LTR16A LTR ERVL -21 429 326 621 341 148 6 chr13 21038915 21039267 -80833902 + L2 LINE L2 2514 2915 -399 2937 31 0 45 chr13 21039647 21040028 -80833141 + L1PA4 LINE L1 5791 6154 -1 21 0 0 0 chr13 21041289 21041310 -80831859 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 21041767 21041794 -80831375 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 683 204 0 40 chr13 21041796 21041948 -80831221 - AluJb SINE Alu -30 282 137 191 341 114 8 chr13 21042260 21042383 -80830786 + MIR3 SINE MIR 13 148 -60 278 287 180 0 chr13 21044385 21044467 -80828702 + MARNA DNA Mariner 166 232 -354 272 70 23 0 chr13 21044467 21044510 -80828659 + (CA)n Simple_repeat Simple_repeat 2 45 0 278 287 180 0 chr13 21044510 21044594 -80828575 + MARNA DNA Mariner 232 362 -224 336 102 0 0 chr13 21044693 21044742 -80828427 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 250 374 33 0 chr13 21045017 21045108 -80828061 - L2 LINE L2 -240 3073 2980 499 164 55 0 chr13 21046370 21046480 -80826689 - L1MA5 LINE L1 -10 6290 6175 212 0 36 0 chr13 21047415 21047443 -80825726 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 1041 164 29 17 chr13 21047871 21048109 -80825060 - L1MA4 LINE L1 -19 6281 6041 183 356 62 14 chr13 21049362 21049508 -80823661 - L2 LINE L2 0 3313 3161 1905 157 7 0 chr13 21050683 21050976 -80822193 - AluSx SINE Alu -14 298 4 199 236 36 18 chr13 21051540 21051595 -80821574 + L3 LINE CR1 818 873 -704 441 265 20 57 chr13 21053316 21053476 -80819693 + LTR1B LTR ERV1 1 151 -634 1627 67 18 0 chr13 21054142 21054365 -80818804 + L1PA7 LINE L1 5920 6146 -8 590 288 6 0 chr13 21054387 21054564 -80818605 + L1ME3A LINE L1 3775 3952 -2194 983 285 71 16 chr13 21054738 21055191 -80817978 + L1ME3A LINE L1 5692 6169 -1 382 265 73 25 chr13 21055182 21055386 -80817783 + L1MC4 LINE L1 6993 7206 -836 * 26 50 0 0 chr13 21055678 21055718 -80817451 + AT_rich Low_complexity Low_complexity 1 40 0 1596 163 62 43 chr13 21055719 21056087 -80817082 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr13 21056275 21056296 -80816873 + AT_rich Low_complexity Low_complexity 1 21 0 259 130 0 43 chr13 21056340 21056386 -80816783 - THE1C LTR MaLR -331 44 1 25 31 0 0 chr13 21056565 21056597 -80816572 + AT_rich Low_complexity Low_complexity 1 32 0 1565 242 12 6 chr13 21056806 21057145 -80816024 + Tigger7 DNA MER2_type 1 341 -2146 456 284 28 32 chr13 21058538 21058788 -80814381 - L1 LINE L1 -3039 3107 2859 1484 197 149 101 chr13 21058807 21059491 -80813678 + LTR28 LTR ERV1 304 1020 0 399 316 23 63 chr13 21059802 21059976 -80813193 - MIR3 SINE MIR -27 181 15 428 245 104 33 chr13 21061469 21061681 -80811488 + HAL1 LINE L1 1091 1317 -1190 574 203 30 15 chr13 21061697 21061830 -80811339 + L1PB4 LINE L1 6022 6156 0 231 207 11 23 chr13 21062154 21062241 -80810928 + GA-rich Low_complexity Low_complexity 2 87 0 580 207 155 72 chr13 21063091 21063284 -80809885 - MER20 DNA MER1_type -3 216 8 217 224 12 12 chr13 21064700 21064785 -80808384 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 1268 201 10 7 chr13 21064849 21065148 -80808021 - L1MA4 LINE L1 -1 6299 6000 317 278 122 41 chr13 21065149 21065394 -80807775 + L1ME LINE L1 5538 5802 -319 204 40 0 0 chr13 21065397 21065422 -80807747 + (TG)n Simple_repeat Simple_repeat 1 25 0 509 285 140 42 chr13 21067140 21067333 -80805836 - MIR SINE MIR -47 215 4 596 346 178 5 chr13 21070827 21071255 -80801914 - L2 LINE L2 -1365 1949 1448 3339 122 26 66 chr13 21071396 21071871 -80801298 + L1MA4A LINE L1 5662 6104 -199 1976 123 10 3 chr13 21071871 21072164 -80801005 + AluSx SINE Alu 1 295 -17 3339 122 26 66 chr13 21072164 21072352 -80800817 + L1MA4A LINE L1 6104 6298 -5 192 241 0 37 chr13 21072679 21072733 -80800436 - MIR SINE MIR -2 260 209 180 0 0 0 chr13 21072735 21072755 -80800414 + (TA)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr13 21072756 21072778 -80800391 + (TG)n Simple_repeat Simple_repeat 2 23 0 227 83 28 0 chr13 21072778 21072814 -80800355 + L1MA4A LINE L1 6250 6286 -17 229 302 31 31 chr13 21072832 21072914 -80800255 - MIR SINE MIR -57 205 121 1966 142 20 0 chr13 21072914 21073216 -80799953 + AluSx SINE Alu 1 308 -4 229 302 31 31 chr13 21073216 21073229 -80799940 - MIR SINE MIR -140 122 110 2064 139 38 12 chr13 21073241 21073586 -80799583 + L1PB4 LINE L1 5772 6125 -31 277 299 155 6 chr13 21073790 21073964 -80799205 - MLT1I LTR MaLR -209 200 1 3597 76 52 2 chr13 21074559 21075043 -80798126 - MER41A LTR ERV1 -46 508 1 370 123 0 0 chr13 21076446 21076511 -80796658 - L1MD2 LINE L1 -3 6356 6292 3468 266 69 64 chr13 21076531 21078529 -80794640 + L1M4b LINE L1 21 2007 -4950 3570 136 20 2 chr13 21078529 21079081 -80794088 + MER61E LTR ERV1 4 565 -4 3468 266 69 64 chr13 21079081 21079485 -80793684 + L1M4b LINE L1 2007 2407 -4550 1675 164 48 0 chr13 21079485 21079754 -80793415 + AluSx SINE Alu 6 287 -25 3468 266 69 64 chr13 21079754 21080742 -80792427 + L1M4b LINE L1 2407 3441 -3516 1438 245 34 5 chr13 21080743 21081159 -80792010 + L1M4b LINE L1 4183 4610 -2347 1097 185 80 15 chr13 21081159 21081419 -80791750 - L1MDa LINE L1 -3890 2650 2461 203 0 37 0 chr13 21081419 21081446 -80791723 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1097 185 80 15 chr13 21081446 21081564 -80791605 - L1MDa LINE L1 -4079 2461 2352 1098 186 44 22 chr13 21081574 21081848 -80791321 - L1MDa LINE L1 -4358 2182 1903 2291 238 95 11 chr13 21081964 21082585 -80790584 - L1MDa LINE L1 -5804 736 64 319 350 91 54 chr13 21082931 21083282 -80789887 + L2 LINE L2 2922 3285 -28 260 242 5 172 chr13 21083322 21083508 -80789661 - L2 LINE L2 -50 3263 3109 1541 163 29 97 chr13 21083539 21083920 -80789249 - MLT1A1 LTR MaLR -7 358 4 21 36 0 0 chr13 21084263 21084291 -80788878 + AT_rich Low_complexity Low_complexity 1 28 0 2342 193 56 6 chr13 21085372 21085853 -80787316 - MLT1D LTR MaLR 0 505 1 396 0 0 0 chr13 21086110 21086154 -80787015 + (TG)n Simple_repeat Simple_repeat 1 44 0 520 335 140 31 chr13 21088070 21088521 -80784648 + L2 LINE L2 2810 3309 -4 2225 95 0 0 chr13 21089360 21089677 -80783492 - AluSp SINE Alu 0 317 1 546 215 69 73 chr13 21090566 21090826 -80782343 - L1MDa LINE L1 -4871 1669 1411 2007 157 0 3 chr13 21090827 21091140 -80782029 - AluSx SINE Alu 0 312 1 10053 61 1 0 chr13 21091197 21093259 -80779910 - L1PA6 LINE L1 0 6154 4097 1856 74 12 0 chr13 21093640 21093898 -80779271 - L1PA6 LINE L1 -2033 4113 3853 1589 262 45 21 chr13 21093896 21094362 -80778807 - L1MDa LINE L1 -6041 499 23 * 1073 186 89 0 chr13 21094371 21094619 -80778550 + Tigger6 DNA MER2_type 1326 1595 -2 423 319 38 4 chr13 21095509 21095680 -80777489 - MIR SINE MIR -64 198 24 370 266 53 0 chr13 21095721 21095815 -80777354 - MIR SINE MIR -163 99 1 862 154 0 27 chr13 21095974 21096143 -80777026 + AluSg/x SINE Alu 136 300 0 21 0 0 0 chr13 21096884 21096905 -80776264 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr13 21097081 21097121 -80776048 + AT_rich Low_complexity Low_complexity 1 40 0 1573 163 69 14 chr13 21097221 21097510 -80775659 - MLT1A1 LTR MaLR -2 363 59 452 336 111 29 chr13 21097787 21098266 -80774903 - L1 LINE L1 -1654 4492 3975 2525 183 7 4 chr13 21098388 21098848 -80774321 + MLT1C LTR MaLR 3 463 -4 22 0 0 0 chr13 21099160 21099182 -80773987 + AT_rich Low_complexity Low_complexity 1 22 0 452 299 63 111 chr13 21099341 21099612 -80773557 + MIR SINE MIR 5 262 0 367 322 0 0 chr13 21100621 21100736 -80772433 - MER103 DNA DNA -51 115 1 974 196 54 10 chr13 21101036 21101240 -80771929 + AluJb SINE Alu 91 303 -9 457 281 179 5 chr13 21101428 21101624 -80771545 + MIR SINE MIR 33 262 0 312 339 89 32 chr13 21101758 21101882 -80771287 - L2 LINE L2 -20 3252 3122 301 292 56 84 chr13 21104805 21104983 -80768186 - MER5B DNA MER1_type -4 174 2 182 311 59 34 chr13 21105059 21105178 -80767991 + MIR SINE MIR 67 188 -74 2558 115 3 6 chr13 21105445 21105810 -80767359 - THE1B LTR MaLR 0 364 1 215 281 62 0 chr13 21105911 21105975 -80767194 + MIR SINE MIR 66 133 -129 180 405 16 8 chr13 21107649 21107770 -80765399 - MIR SINE MIR -113 149 28 276 30 0 0 chr13 21110661 21110694 -80762475 + (TG)n Simple_repeat Simple_repeat 2 34 0 757 169 23 0 chr13 21112699 21112829 -80760340 + MSTD LTR MaLR 1 133 -263 564 222 49 0 chr13 21112843 21112992 -80760177 + MLT1A1 LTR MaLR 244 364 -1 1544 208 3 10 chr13 21113143 21113455 -80759714 + AluJo SINE Alu 3 312 0 21 57 0 0 chr13 21113911 21113946 -80759223 + AT_rich Low_complexity Low_complexity 1 35 0 363 0 0 0 chr13 21114074 21114118 -80759051 + L1PA6 LINE L1 6108 6151 -3 21 0 0 0 chr13 21114118 21114139 -80759030 + AT_rich Low_complexity Low_complexity 1 21 0 958 231 42 49 chr13 21114531 21114817 -80758352 - MER65B LTR ERV1 -18 513 230 444 346 5 16 chr13 21115661 21115849 -80757320 - MIR SINE MIR -52 210 25 657 277 44 39 chr13 21116373 21116579 -80756590 - MIR SINE MIR -54 208 2 4497 54 0 0 chr13 21117411 21117969 -80755200 - LTR6B LTR ERV1 0 558 1 359 238 12 0 chr13 21118078 21118158 -80755011 - MIR SINE MIR -10 252 172 649 272 10 26 chr13 21118544 21118739 -80754430 - MIR SINE MIR 0 262 71 909 280 96 23 chr13 21118740 21119136 -80754033 + L2 LINE L2 2319 2743 -571 646 296 18 93 chr13 21119119 21119291 -80753878 + L2 LINE L2 2952 3080 -233 * 2329 72 7 3 chr13 21119291 21119595 -80753574 - AluY SINE Alu -6 305 1 646 296 18 93 chr13 21119595 21119810 -80753359 + L2 LINE L2 3080 3310 -3 248 321 12 0 chr13 21120378 21120462 -80752707 + L1ME LINE L1 5598 5682 -439 23 68 0 0 chr13 21127639 21127683 -80745486 + AT_rich Low_complexity Low_complexity 1 44 0 260 266 25 0 chr13 21130370 21130449 -80742720 + (TA)n Simple_repeat Simple_repeat 1 81 0 2057 130 32 13 chr13 21130686 21131002 -80742167 - MER7A DNA MER2_type -26 320 1 189 107 0 0 chr13 21131017 21131045 -80742124 + (CA)n Simple_repeat Simple_repeat 2 29 0 320 250 0 13 chr13 21131046 21131122 -80742047 - L2 LINE L2 -12 3260 3186 195 42 0 0 chr13 21131315 21131339 -80741830 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 26 50 0 0 chr13 21134016 21134056 -80739113 + AT_rich Low_complexity Low_complexity 1 40 0 475 305 65 29 chr13 21134126 21134572 -80738597 - L1MEc LINE L1 -4672 2153 1692 17686 173 53 27 chr13 21134786 21138899 -80734270 - L1MA2 LINE L1 0 7723 3238 634 156 0 0 chr13 21138899 21138989 -80734180 + 5S rRNA rRNA 2 91 -30 17686 173 53 27 chr13 21138989 21142299 -80730870 - L1MA2 LINE L1 -4485 3238 14 233 230 0 11 chr13 21142301 21142388 -80730781 - L1MEc LINE L1 -5174 1368 1283 23 33 0 0 chr13 21143117 21143147 -80730022 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr13 21144173 21144195 -80728974 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 410 203 24 11 chr13 21144530 21144651 -80728518 - L1MD2 LINE L1 -320 5858 5746 571 184 31 12 chr13 21145559 21145722 -80727447 - L1MA7 LINE L1 -2 6289 6124 472 167 13 0 chr13 21145722 21145800 -80727369 - Tigger5 DNA MER2_type 0 2323 2245 298 200 0 0 chr13 21145807 21145857 -80727312 - Tigger5 DNA MER2_type -2273 50 1 1092 140 17 146 chr13 21145860 21146192 -80726977 - L1MA7 LINE L1 -150 6034 5813 538 158 0 0 chr13 21146227 21146322 -80726847 - L1MA6 LINE L1 -24 6276 6182 * 3706 279 52 37 chr13 21146318 21148237 -80724932 - L1 LINE L1 -3150 3200 1310 198 0 0 0 chr13 21148237 21148259 -80724910 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3706 279 52 37 chr13 21148259 21149280 -80723889 - L1 LINE L1 -5040 1310 540 2299 117 0 0 chr13 21149280 21149588 -80723581 + AluSp SINE Alu 6 313 0 3706 279 52 37 chr13 21149588 21150135 -80723034 - L1 LINE L1 -5810 540 2 357 82 0 0 chr13 21150139 21150188 -80722981 + (TG)n Simple_repeat Simple_repeat 2 50 0 559 289 94 25 chr13 21150572 21150807 -80722362 - MIR SINE MIR -10 252 2 1506 212 59 15 chr13 21151057 21151397 -80721772 + MLT1A1 LTR MaLR 3 357 -8 267 103 0 0 chr13 21151487 21151526 -80721643 + (T)n Simple_repeat Simple_repeat 1 39 0 2132 128 0 0 chr13 21151584 21151882 -80721287 - AluSx SINE Alu -14 298 1 1676 226 60 20 chr13 21151937 21152474 -80720695 - L1MC/D LINE L1 -556 5686 5121 25 0 0 0 chr13 21152777 21152802 -80720367 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr13 21153202 21153245 -80719924 + AT_rich Low_complexity Low_complexity 1 43 0 247 263 26 0 chr13 21153246 21153322 -80719847 + MER116 DNA Mariner 3 80 0 425 332 101 14 chr13 21154092 21154309 -80718860 + MIR SINE MIR 15 250 -12 199 333 89 0 chr13 21154766 21154856 -80718313 - MIR SINE MIR -9 253 156 350 265 103 8 chr13 21154856 21154973 -80718196 + MIR SINE MIR 19 146 -116 602 252 15 0 chr13 21155496 21155627 -80717542 - MER5A DNA MER1_type -56 133 1 2060 144 51 25 chr13 21155696 21156051 -80717118 - THE1B LTR MaLR 0 364 1 11181 105 19 0 chr13 21156053 21157602 -80715567 - THE1B-int LTR MaLR -2 1578 1 2259 113 51 25 chr13 21157602 21157957 -80715212 - THE1B LTR MaLR 0 364 1 195 42 0 0 chr13 21158756 21158780 -80714389 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 27 0 0 0 chr13 21158802 21158829 -80714340 + AT_rich Low_complexity Low_complexity 1 27 0 1965 120 0 37 chr13 21158831 21159131 -80714038 + AluSx SINE Alu 1 289 -23 656 248 41 52 chr13 21161006 21161305 -80711864 - L1MEc LINE L1 -3956 2440 2139 186 71 0 0 chr13 21161305 21161333 -80711836 + (TTG)n Simple_repeat Simple_repeat 1 28 0 1856 113 47 14 chr13 21161333 21161603 -80711566 - AluSx SINE Alu -33 279 1 656 248 41 52 chr13 21161603 21161650 -80711519 - L1MEc LINE L1 -4255 2141 2102 5085 163 17 14 chr13 21161689 21162670 -80710499 - L1MA7 LINE L1 -10 6281 5298 914 142 59 34 chr13 21162681 21162885 -80710284 + L1MA7 LINE L1 5075 5283 -863 576 233 18 111 chr13 21162924 21163131 -80710038 - L1MEc LINE L1 -4354 2042 1888 2059 125 3 14 chr13 21163131 21163428 -80709741 - AluSq SINE Alu -18 295 2 576 233 18 111 chr13 21163428 21163615 -80709554 - L1MEc LINE L1 -4508 1888 1685 4044 188 27 46 chr13 21163693 21164862 -80708307 - L1MB7 LINE L1 -19 6165 5016 4226 138 29 0 chr13 21164868 21165551 -80707618 - L1PA15 LINE L1 -3 6162 5460 27369 46 38 3 chr13 21165553 21169050 -80704119 + L1P LINE L1 1 3622 -2524 8626 44 4 0 chr13 21170195 21171265 -80701904 + L1PA4 LINE L1 1449 2522 -3624 8046 30 7 3 chr13 21171245 21172806 -80700363 + L1PA4 LINE L1 4394 5956 -199 * 5856 261 146 37 chr13 21172906 21175497 -80697672 + L1PA15 LINE L1 98 2969 -4612 11768 213 14 11 chr13 21175597 21178427 -80694742 + L1PA15 LINE L1 3812 6646 -957 2127 144 131 11 chr13 21178427 21178809 -80694360 + MSTA LTR MaLR 1 428 0 11768 213 14 11 chr13 21178809 21179763 -80693406 + L1PA15 LINE L1 6646 7595 -8 41 0 0 0 chr13 21179868 21179909 -80693260 + AT_rich Low_complexity Low_complexity 1 41 0 461 181 28 28 chr13 21179909 21180135 -80693034 + (TAA)n Simple_repeat Simple_repeat 1 226 0 601 300 98 18 chr13 21180150 21180660 -80692509 + L1MEc LINE L1 1089 1639 -4757 2555 169 77 8 chr13 21180981 21181513 -80691656 - L1MA5 LINE L1 -2 6298 5730 731 172 8 0 chr13 21182154 21182276 -80690893 + MER20 DNA MER1_type 93 215 -4 2197 123 0 0 chr13 21183859 21184161 -80689008 - AluY SINE Alu -9 302 1 190 226 36 107 chr13 21184726 21184810 -80688359 + MIR SINE MIR 46 123 -139 750 268 56 9 chr13 21185582 21185795 -80687374 + MIR SINE MIR 25 247 -15 508 281 27 36 chr13 21187639 21187860 -80685309 + L1MC4 LINE L1 6474 6692 -1350 2685 232 54 7 chr13 21187863 21188476 -80684693 + MER82 DNA MER2_type 6 647 -6 596 218 115 13 chr13 21188481 21188637 -80684532 + L1MC4 LINE L1 6673 6844 -1198 1616 91 0 5 chr13 21188641 21188849 -80684320 - AluSx SINE Alu -105 207 1 558 317 38 6 chr13 21189988 21190171 -80682998 + MIR SINE MIR 40 228 -34 262 275 58 0 chr13 21190625 21190745 -80682424 - L1MA5 LINE L1 -738 5426 5300 218 204 0 0 chr13 21190914 21190958 -80682211 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 650 308 90 54 chr13 21190969 21191706 -80681463 - L1M4 LINE L1 -892 5254 4454 1489 186 43 14 chr13 21191706 21191986 -80681183 + AluJb SINE Alu 2 289 -23 650 308 90 54 chr13 21191986 21192480 -80680689 - L1M4 LINE L1 -1692 4454 3979 335 293 90 18 chr13 21192598 21192765 -80680404 - L1MEc LINE L1 -4084 2741 2563 43534 42 5 3 chr13 21193216 21199411 -80673758 + L1PA3 LINE L1 1 6204 0 1990 145 3 0 chr13 21199472 21199768 -80673401 + AluSq SINE Alu 1 297 -16 234 326 46 34 chr13 21199857 21200032 -80673137 - L1MEc LINE L1 -4850 1692 1516 2511 220 22 22 chr13 21200299 21200854 -80672315 + MER74A LTR ERVL 4 558 0 21 0 0 0 chr13 21202527 21202548 -80670621 + AT_rich Low_complexity Low_complexity 1 21 0 254 303 110 9 chr13 21203142 21203251 -80669918 - LTR16C LTR ERVL -8 483 364 288 117 43 5 chr13 21203287 21203349 -80669820 + AluY SINE Alu 1 44 -258 1913 105 19 0 chr13 21203474 21203741 -80669428 - AluSp SINE Alu -1 312 41 1934 290 80 23 chr13 21203746 21204480 -80668689 + L1MC/D LINE L1 95 870 -5670 1293 234 33 19 chr13 21204522 21204829 -80668340 + L1MA1 LINE L1 163 473 -7092 * 11088 162 72 61 chr13 21204818 21210660 -80662509 + L1MA1 LINE L1 1707 7618 -103 3967 220 81 21 chr13 21210671 21211811 -80661358 + L1MC/D LINE L1 1084 2323 -4217 351 0 0 0 chr13 21211811 21211850 -80661319 + (CA)n Simple_repeat Simple_repeat 2 40 0 3967 220 81 21 chr13 21211850 21212093 -80661076 + L1MC/D LINE L1 2323 2550 -3990 1062 218 91 40 chr13 21212100 21212729 -80660440 + L1MC/D LINE L1 4841 5437 -1199 2149 70 0 4 chr13 21212729 21213001 -80660168 + AluY SINE Alu 41 311 0 1062 218 91 40 chr13 21213001 21213125 -80660044 + L1MC/D LINE L1 5437 5553 -1083 2103 117 79 18 chr13 21213125 21213468 -80659701 - THE1B LTR MaLR 0 364 1 1062 218 91 40 chr13 21213468 21213540 -80659629 + L1MC/D LINE L1 5553 5970 -666 4529 184 88 159 chr13 21213540 21215429 -80657740 + MER52A LTR ERV1 1 1755 0 614 124 0 0 chr13 21215429 21215526 -80657643 + L1 LINE L1 4735 4831 -1315 30 27 0 0 chr13 21215978 21216015 -80657154 + AT_rich Low_complexity Low_complexity 1 37 0 7517 144 46 25 chr13 21216137 21217022 -80656147 - MER57-int LTR ERV1 -1042 6495 5630 333 0 0 0 chr13 21217022 21217059 -80656110 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 366 23 0 0 chr13 21217058 21217101 -80656068 + (CA)n Simple_repeat Simple_repeat 2 44 0 7517 144 46 25 chr13 21217059 21218299 -80654870 - MER57-int LTR ERV1 -1907 5630 4299 11151 28 6 0 chr13 21218556 21220651 -80652518 + L1PA3 LINE L1 4056 6155 0 236 234 16 16 chr13 21220742 21220870 -80652299 + (TA)n Simple_repeat Simple_repeat 1 128 0 458 337 46 83 chr13 21221048 21221481 -80651688 - HAL1 LINE L1 -933 1574 1158 2183 142 108 5 chr13 21221497 21221885 -80651284 - MSTA LTR MaLR 0 428 1 336 333 22 11 chr13 21222189 21222372 -80650797 - L1MEd LINE L1 -5923 196 12 308 218 79 79 chr13 21223148 21223249 -80649920 + MER58 DNA MER1_type 1 101 -114 381 43 0 0 chr13 21223291 21223338 -80649831 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2343 148 32 25 chr13 21223347 21223778 -80649391 + Tigger2a DNA MER2_type 1 434 0 256 116 0 23 chr13 21223817 21223860 -80649309 + MER58 DNA MER1_type 2379 2420 0 307 283 93 4 chr13 21224299 21224536 -80648633 - HAL1 LINE L1 -2 2505 2248 231 147 0 0 chr13 21224542 21224576 -80648593 + U2 snRNA snRNA 1 34 -154 429 70 0 0 chr13 21224677 21224734 -80648435 + (TG)n Simple_repeat Simple_repeat 2 58 0 1224 162 20 0 chr13 21224743 21224947 -80648222 + MER2 DNA MER2_type 4 211 -134 1155 299 90 68 chr13 21225081 21226060 -80647109 - HAL1 LINE L1 -419 2088 1132 1494 207 14 7 chr13 21226060 21226350 -80646819 - AluJo SINE Alu -16 296 5 1155 299 90 68 chr13 21226350 21226362 -80646807 - HAL1 LINE L1 -1375 1132 1122 2690 89 35 15 chr13 21226362 21226757 -80646412 - L1PA10 LINE L1 -1 6167 5765 1155 299 90 68 chr13 21226757 21227391 -80645778 - HAL1 LINE L1 -1385 1122 427 377 365 38 0 chr13 21228809 21229020 -80644149 - MLT1J2 LTR MaLR -211 239 21 23 33 0 0 chr13 21229529 21229559 -80643610 + AT_rich Low_complexity Low_complexity 1 30 0 1259 205 60 55 chr13 21229720 21230105 -80643064 + MLT1C LTR MaLR 81 467 0 277 266 123 34 chr13 21230182 21230475 -80642694 + L1ME3A LINE L1 3197 3515 -2631 9038 206 39 12 chr13 21230583 21231605 -80641564 - L1PA15 LINE L1 0 6165 5172 195 69 0 0 chr13 21231605 21231634 -80641535 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9038 206 39 12 chr13 21231634 21232167 -80641002 - L1PA15 LINE L1 -993 5172 4655 2133 67 14 25 chr13 21232167 21232450 -80640719 + AluY SINE Alu 21 300 -11 9038 206 39 12 chr13 21232450 21232462 -80640707 - L1PA15 LINE L1 -1510 4655 4645 2624 87 8 19 chr13 21232462 21232830 -80640339 + THE1B LTR MaLR 1 364 0 9038 206 39 12 chr13 21232830 21234397 -80638772 - L1PA15 LINE L1 -1520 4645 2975 921 241 68 6 chr13 21234629 21234940 -80638229 - L1PA15 LINE L1 -3170 2976 2647 1656 185 110 0 chr13 21234940 21235232 -80637937 - MER1B DNA MER1_type 0 339 16 4410 258 17 21 chr13 21235267 21236588 -80636581 - L1PA15 LINE L1 -3537 2609 1294 264 312 20 15 chr13 21236822 21237024 -80636145 + L1ME3A LINE L1 5004 5206 -940 22 0 0 0 chr13 21237179 21237201 -80635968 + AT_rich Low_complexity Low_complexity 1 22 0 457 324 97 31 chr13 21237257 21237640 -80635529 + L1ME3A LINE L1 5539 5946 -224 23 33 0 0 chr13 21237890 21237920 -80635249 + AT_rich Low_complexity Low_complexity 1 30 0 411 276 199 32 chr13 21238148 21238304 -80634865 - MER5A DNA MER1_type -1 188 7 416 237 38 15 chr13 21238369 21238500 -80634669 + MER94 DNA DNA 1 134 0 2371 73 0 0 chr13 21238970 21239273 -80633896 + AluY SINE Alu 1 303 -8 3524 131 40 8 chr13 21239318 21239914 -80633255 - L1PA16 LINE L1 -2 6164 5550 12327 47 1 1 chr13 21239919 21242206 -80630963 - L1PA5 LINE L1 -3 6151 3854 5411 202 17 11 chr13 21242226 21243664 -80629505 - L1PA16 LINE L1 -600 5565 4123 21 36 0 0 chr13 21243734 21243762 -80629407 + AT_rich Low_complexity Low_complexity 1 28 0 835 415 70 61 chr13 21244910 21245337 -80627832 + Tigger2 DNA MER2_type 2 2716 -2 193 324 40 27 chr13 21245705 21245779 -80627390 - L3 LINE CR1 -434 1143 1069 285 323 116 0 chr13 21245972 21246127 -80627042 - L3 LINE CR1 -801 776 604 322 308 77 0 chr13 21246273 21246403 -80626766 - MIR SINE MIR -57 205 66 1075 236 55 63 chr13 21246525 21246982 -80626187 + L1ME2 LINE L1 5434 5886 -278 26 0 0 0 chr13 21247084 21247110 -80626059 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr13 21247140 21247162 -80626007 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 10461 35 1 8 chr13 21247162 21249208 -80623961 - L1PA3 LINE L1 -10 6145 4109 512 177 0 9 chr13 21251619 21251732 -80621437 + CT-rich Low_complexity Low_complexity 1 112 0 651 360 51 30 chr13 21252118 21252643 -80620526 + L1MEc LINE L1 82 617 -5779 * 3329 153 38 10 chr13 21252642 21252913 -80620256 + L1MC2 LINE L1 5201 5463 -881 2069 164 48 3 chr13 21252913 21253286 -80619883 - MLT1B LTR MaLR 0 390 1 3329 153 38 10 chr13 21253286 21253646 -80619523 + L1MC2 LINE L1 5463 5852 -492 529 202 69 32 chr13 21253925 21254164 -80619005 - MER57A-int LTR ERV1 -2710 3621 1548 2167 160 56 134 chr13 21254164 21254828 -80618341 - LTR9 LTR ERV1 0 612 1 309 175 0 0 chr13 21254917 21255003 -80618166 - MER57A-int LTR ERV1 -3202 2889 1865 461 245 0 0 chr13 21255254 21255348 -80617821 - MER57A-int LTR ERV1 -2991 3340 3247 271 204 0 87 chr13 21255437 21255540 -80617629 - MER57A-int LTR ERV1 -3735 1388 1295 * 337 211 61 26 chr13 21255512 21255626 -80617543 - MER57A-int LTR ERV1 -4612 1986 1869 359 260 13 53 chr13 21255626 21255882 -80617287 - MER34C LTR ERV1 -143 442 155 3901 165 20 6 chr13 21256128 21256897 -80616272 - MER57A-int LTR ERV1 -6695 842 1 2289 156 31 0 chr13 21256897 21257288 -80615881 - MER57A LTR ERV1 0 403 1 26 30 0 0 chr13 21257591 21257624 -80615545 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 21258097 21258119 -80615050 + AT_rich Low_complexity Low_complexity 1 22 0 1771 122 79 4 chr13 21259530 21259809 -80613360 - AluSx SINE Alu -10 302 3 1631 152 40 25 chr13 21260146 21260469 -80612700 + MER4A LTR ERV1 1 328 -336 2965 102 12 0 chr13 21260529 21260930 -80612239 + MLT2A2 LTR ERVL 1 406 -47 258 0 118 0 chr13 21260982 21261016 -80612153 + MLT2A2 LTR ERVL 416 453 0 * 549 189 253 26 chr13 21261016 21261246 -80611923 + MER4C LTR ERV1 165 447 -18 494 339 16 32 chr13 21261566 21261755 -80611414 + MIR SINE MIR 47 232 -30 33 73 0 0 chr13 21261763 21261831 -80611338 + AT_rich Low_complexity Low_complexity 1 68 0 2100 207 52 2 chr13 21262089 21262495 -80610674 - MSTB LTR MaLR 0 426 1 235 275 22 138 chr13 21263070 21263208 -80609961 + MIR3 SINE MIR 82 203 -5 372 348 39 11 chr13 21264153 21264331 -80608838 + MIR SINE MIR 49 231 -31 2137 180 55 2 chr13 21264453 21264853 -80608316 - MSTB1 LTR MaLR -8 424 4 334 265 98 0 chr13 21266740 21266872 -80606297 - L1M4 LINE L1 -2950 3196 3052 7643 255 50 15 chr13 21267147 21270879 -80602290 + L1PA13 LINE L1 1 4391 -2406 1756 180 91 14 chr13 21270979 21271395 -80601774 + L1MC2 LINE L1 5896 6343 -1 287 316 0 8 chr13 21271412 21271529 -80601640 + L1M4 LINE L1 4253 4368 -1778 * 827 127 0 0 chr13 21271528 21271646 -80601523 + THE1-int LTR MaLR 1208 1325 -255 959 290 40 40 chr13 21271707 21271775 -80601394 + L1M4 LINE L1 4416 4483 -1663 2166 105 43 65 chr13 21271775 21271816 -80601353 - THE1B LTR MaLR -1 363 323 1943 158 10 0 chr13 21271816 21272126 -80601043 + AluSq SINE Alu 1 313 0 2166 105 43 65 chr13 21272126 21272455 -80600714 - THE1B LTR MaLR -41 323 1 11491 98 3 1 chr13 21272455 21274032 -80599137 - THE1B-int LTR MaLR 0 1580 1 1955 131 56 47 chr13 21274032 21274391 -80598778 - THE1B LTR MaLR 0 364 3 959 290 40 40 chr13 21274391 21274633 -80598536 + L1M4 LINE L1 4481 4722 -1424 1778 155 29 0 chr13 21274633 21274910 -80598259 - AluSx SINE Alu -27 285 1 959 290 40 40 chr13 21274910 21275214 -80597955 + L1M4 LINE L1 4721 5033 -1113 1007 153 24 17 chr13 21275223 21275427 -80597742 - MER52C LTR ERV1 -1093 185 1 737 205 19 26 chr13 21275430 21275586 -80597583 + L1ME1 LINE L1 5986 6140 -26 22 56 0 0 chr13 21275602 21275638 -80597531 + AT_rich Low_complexity Low_complexity 1 36 0 212 313 50 0 chr13 21276161 21276241 -80596928 - L2 LINE L2 -1 3312 3229 191 383 94 16 chr13 21276472 21276600 -80596569 + MIR3 SINE MIR 4 141 -67 267 261 0 29 chr13 21276622 21276691 -80596478 + MIR SINE MIR 196 262 0 4675 175 32 13 chr13 21277134 21278360 -80594809 - L1PA16 LINE L1 0 6166 4915 180 0 0 0 chr13 21280368 21280388 -80592781 + (A)n Simple_repeat Simple_repeat 1 20 0 1827 148 4 0 chr13 21280450 21280721 -80592448 - AluSg SINE Alu -17 293 22 2821 86 20 13 chr13 21281064 21281461 -80591708 + MLT2A1 LTR ERVL 1 400 -44 247 100 100 0 chr13 21281516 21281566 -80591603 + MLT2A1 LTR ERVL 399 453 0 353 325 61 15 chr13 21282681 21282878 -80590291 + MIR SINE MIR 3 208 -54 983 224 0 45 chr13 21282899 21283167 -80590002 + L1MA4 LINE L1 6005 6260 -40 360 43 0 0 chr13 21283234 21283280 -80589889 + (TG)n Simple_repeat Simple_repeat 2 47 0 5028 176 18 17 chr13 21283441 21284229 -80588940 + L1PA15 LINE L1 3924 4709 -1456 2626 154 2 16 chr13 21284229 21284663 -80588506 - MSTA LTR MaLR 0 428 1 5028 176 18 17 chr13 21284663 21286111 -80587058 + L1PA15 LINE L1 4709 6163 -2 202 316 214 8 chr13 21287313 21287430 -80585739 - MIR SINE MIR -6 256 116 34 55 0 0 chr13 21288044 21288099 -80585070 + AT_rich Low_complexity Low_complexity 1 55 0 30258 48 34 8 chr13 21288155 21292092 -80581077 + L1P LINE L1 1 4038 -2108 486 0 0 0 chr13 21292783 21292837 -80580332 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 276 301 111 13 chr13 21294042 21294195 -80578974 - L1MC/D LINE L1 -2233 5575 5408 276 407 0 7 chr13 21295795 21295930 -80577239 - L2 LINE L2 -1 3271 3138 259 285 78 24 chr13 21295929 21296056 -80577113 + MIR3 SINE MIR 12 146 -67 * 3985 192 30 37 chr13 21296242 21297526 -80575643 - L1MB4 LINE L1 0 6180 4909 245 292 83 4 chr13 21297593 21297709 -80575460 - L1M4c LINE L1 -5710 936 642 21 36 0 0 chr13 21298161 21298189 -80574980 + AT_rich Low_complexity Low_complexity 1 28 0 267 81 50 40 chr13 21298685 21298784 -80574385 + (TA)n Simple_repeat Simple_repeat 1 100 0 4601 31 0 0 chr13 21300106 21300655 -80572514 - L1PA4 LINE L1 0 6155 5607 267 114 0 0 chr13 21301184 21301228 -80571941 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 391 274 41 123 chr13 21301236 21301601 -80571568 - L2 LINE L2 -20 3293 2959 1794 249 46 69 chr13 21301630 21302265 -80570904 - MLT1E2 LTR MaLR -6 620 1 182 248 314 9 chr13 21302265 21302370 -80570799 - L2 LINE L2 -378 2936 2800 358 328 32 0 chr13 21302370 21302495 -80570674 - L2 LINE L2 -458 2856 2728 23 33 0 0 chr13 21302592 21302622 -80570547 + AT_rich Low_complexity Low_complexity 1 30 0 511 210 19 70 chr13 21302898 21303055 -80570114 - MIR SINE MIR -21 241 93 295 255 0 39 chr13 21303055 21303157 -80570012 + L1MA9 LINE L1 6185 6282 -30 291 359 32 26 chr13 21303251 21303407 -80569762 - MIR SINE MIR -79 183 27 795 170 12 64 chr13 21303484 21303655 -80569514 - MER58A DNA MER1_type -3 221 60 4095 183 7 16 chr13 21303655 21303866 -80569303 - MER44D DNA MER2_type -1882 605 394 2998 195 16 67 chr13 21303866 21304594 -80568575 - LTR8 LTR ERV1 0 691 1 4095 183 7 16 chr13 21304594 21304781 -80568388 - MER44D DNA MER2_type -2093 394 207 2180 191 20 75 chr13 21304781 21305367 -80567802 + MLT2B3 LTR ERVL 1 554 0 4095 183 7 16 chr13 21305367 21305701 -80567468 - MER44D DNA MER2_type -2280 207 7 296 242 0 15 chr13 21305704 21305770 -80567399 - MER58A DNA MER1_type -42 65 1 681 266 51 65 chr13 21305789 21306023 -80567146 + L1ME3A LINE L1 5821 6050 -120 1248 139 0 23 chr13 21306023 21306239 -80566930 + L1PA15 LINE L1 5948 6158 -7 681 266 51 65 chr13 21306239 21306358 -80566811 + L1ME3A LINE L1 6050 6169 -1 444 337 50 0 chr13 21306516 21306718 -80566451 - MIR SINE MIR 0 262 51 3542 145 51 73 chr13 21306881 21307603 -80565566 - MER50 LTR ERV1 -28 706 1 229 306 62 62 chr13 21308138 21308298 -80564871 + L2 LINE L2 3151 3310 -3 841 196 57 10 chr13 21309228 21309423 -80563746 + L1MC4 LINE L1 7599 7713 -95 184 378 78 0 chr13 21310231 21310321 -80562848 - L2 LINE L2 -24 3248 3152 2246 237 86 9 chr13 21310415 21311064 -80562105 + L1MC3 LINE L1 6100 6798 -987 1142 243 39 3 chr13 21312175 21312459 -80560710 - MER67D LTR ERV1 -4 510 217 2472 165 20 41 chr13 21312469 21313009 -80560160 - L1MA9 LINE L1 -2 6310 5782 183 80 0 0 chr13 21313020 21313045 -80560124 + (CA)n Simple_repeat Simple_repeat 2 26 0 303 28 0 0 chr13 21313090 21313126 -80560043 + (TA)n Simple_repeat Simple_repeat 1 36 0 1151 137 71 0 chr13 21313136 21313348 -80559821 - L1MA9 LINE L1 -523 5789 5563 966 151 0 121 chr13 21313357 21313589 -80559580 - MER67D LTR ERV1 -296 218 15 246 369 25 8 chr13 21313800 21313922 -80559247 + MER5A DNA MER1_type 66 189 0 538 320 84 19 chr13 21314127 21314449 -80558720 + L1ME3A LINE L1 5807 6149 -21 2155 64 17 20 chr13 21314477 21314773 -80558396 + AluY SINE Alu 1 295 -16 654 386 6 6 chr13 21314903 21315224 -80557945 + LTR16B LTR ERVL 77 397 -67 247 323 21 11 chr13 21315375 21315468 -80557701 - L2 LINE L2 0 3313 3220 333 149 0 0 chr13 21315468 21315535 -80557634 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 313 266 114 93 chr13 21315535 21315825 -80557344 - L2 LINE L2 -824 2490 2195 570 240 8 8 chr13 21316119 21316248 -80556921 + FLAM_A SINE Alu 1 129 -4 286 294 127 0 chr13 21316744 21316870 -80556299 - MIR SINE MIR 0 262 121 917 249 24 40 chr13 21317142 21317519 -80555650 + L1ME1 LINE L1 3224 3594 -2552 2132 236 92 39 chr13 21317551 21317802 -80555367 + L1ME1 LINE L1 5317 5553 -613 1576 192 14 3 chr13 21317802 21318094 -80555075 + AluJo SINE Alu 6 300 -12 2132 236 92 39 chr13 21318094 21318631 -80554538 + L1ME1 LINE L1 5553 6147 -19 389 224 0 0 chr13 21319149 21319216 -80553953 + MER2 DNA MER2_type 278 344 -1 1069 183 78 47 chr13 21319413 21319828 -80553341 - MLT1D LTR MaLR 0 505 41 1876 156 3 0 chr13 21319828 21320117 -80553052 - AluSx SINE Alu -21 291 2 1069 183 78 47 chr13 21320117 21320160 -80553009 - MLT1D LTR MaLR -464 41 1 189 0 0 0 chr13 21321445 21321466 -80551703 + (T)n Simple_repeat Simple_repeat 1 21 0 534 273 44 54 chr13 21322085 21322290 -80550879 - LTR33 LTR ERVL -309 212 10 1709 302 96 21 chr13 21322292 21322962 -80550207 - HAL1 LINE L1 -68 2439 1820 503 103 13 0 chr13 21322962 21323040 -80550129 + MADE1 DNA Mariner 1 79 -1 1709 302 96 21 chr13 21323040 21323112 -80550057 - HAL1 LINE L1 -687 1820 1755 207 0 0 0 chr13 21323112 21323135 -80550034 + (TG)n Simple_repeat Simple_repeat 2 24 0 1709 302 96 21 chr13 21323135 21323370 -80549799 - HAL1 LINE L1 -752 1755 1388 222 264 0 0 chr13 21324476 21324529 -80548640 + (TG)n Simple_repeat Simple_repeat 1 53 0 180 359 145 23 chr13 21324926 21325057 -80548112 - L2 LINE L2 -2734 580 434 393 221 11 21 chr13 21325498 21325593 -80547576 + MER81 DNA DNA 6 99 -15 549 350 34 0 chr13 21327057 21327234 -80545935 + MER91A DNA MER1_type 2 184 -12 1646 95 5 5 chr13 21328317 21328539 -80544630 + AluSx SINE Alu 1 222 -90 400 303 64 77 chr13 21331268 21332314 -80540855 + L1MEc LINE L1 786 1817 -4579 506 303 74 57 chr13 21332323 21332520 -80540649 + L1MEc LINE L1 1880 2072 -4324 239 54 27 0 chr13 21332520 21332557 -80540612 + (TG)n Simple_repeat Simple_repeat 2 39 0 506 303 74 57 chr13 21332557 21332818 -80540351 + L1MEc LINE L1 2072 2346 -4050 319 305 24 43 chr13 21333026 21333190 -80539979 - L1ME LINE L1 -5897 173 13 309 169 0 0 chr13 21334072 21334131 -80539038 + L1MA2 LINE L1 6246 6304 0 30 45 0 0 chr13 21334131 21334175 -80538994 + AT_rich Low_complexity Low_complexity 1 44 0 1104 283 106 45 chr13 21335722 21336281 -80536888 - MLT1E LTR MaLR 0 593 1 21 0 0 0 chr13 21336628 21336649 -80536520 + AT_rich Low_complexity Low_complexity 1 21 0 2358 99 0 13 chr13 21337265 21337579 -80535590 + AluY SINE Alu 1 310 -1 2200 97 16 13 chr13 21337604 21337913 -80535256 + AluSg SINE Alu 1 310 0 273 294 185 8 chr13 21337941 21338060 -80535109 - LTR50 LTR ERVL -612 183 44 575 273 118 51 chr13 21338098 21338453 -80534716 + LTR16A LTR ERVL 67 445 -5 1249 284 88 49 chr13 21338822 21339473 -80533696 - ERVL LTR ERVL -290 5474 4799 6059 75 157 38 chr13 21339713 21340760 -80532409 - MER11A LTR ERVK 0 1266 1 297 314 81 16 chr13 21340969 21341093 -80532076 - L2 LINE L2 -515 2799 2668 2076 158 42 34 chr13 21341157 21341704 -80531465 + MLT2A2 LTR ERVL 1 554 0 557 296 26 57 chr13 21341704 21341934 -80531235 - L2 LINE L2 -991 2323 2101 238 340 57 9 chr13 21342549 21342655 -80530514 - MER5B DNA MER1_type -50 128 18 3476 47 2 0 chr13 21342698 21343128 -80530041 + L1PA5 LINE L1 5720 6150 -4 390 322 65 50 chr13 21344344 21344543 -80528626 - MIR SINE MIR -15 247 46 420 291 54 73 chr13 21344687 21344929 -80528240 - L1M4 LINE L1 -4255 2570 2325 1266 209 95 4 chr13 21344929 21345202 -80527967 + AluJo SINE Alu 1 298 -14 420 291 54 73 chr13 21345202 21345481 -80527688 - L1M4 LINE L1 -4500 2325 2059 * 1899 260 67 39 chr13 21345479 21346704 -80526465 - L1MB7 LINE L1 -3 6181 4903 1156 314 17 101 chr13 21346760 21347168 -80526001 - MLT1A2 LTR MaLR 0 374 1 1172 237 65 67 chr13 21347173 21347485 -80525684 - MLT1D LTR MaLR 0 505 193 2129 130 7 3 chr13 21347485 21347792 -80525377 - AluSg SINE Alu -2 308 1 1172 237 65 67 chr13 21347792 21347956 -80525213 - MLT1D LTR MaLR -312 193 30 1141 248 60 86 chr13 21347978 21349001 -80524168 - L1M4 LINE L1 -4782 1864 875 605 231 26 6 chr13 21349422 21349578 -80523591 - MER57A LTR ERV1 -1 402 244 1637 67 0 0 chr13 21349578 21349788 -80523381 - L1PA8 LINE L1 -187 5944 5735 1545 101 0 0 chr13 21349788 21350004 -80523165 + L1PA8 LINE L1 5941 6158 -14 22 0 0 0 chr13 21350004 21350026 -80523143 + AT_rich Low_complexity Low_complexity 1 22 0 635 220 10 131 chr13 21350026 21350256 -80522913 - MER57B LTR ERV1 -160 274 44 773 296 54 25 chr13 21350277 21350594 -80522575 - MER31-int LTR ERV1 -491 7325 7000 1069 259 33 72 chr13 21352126 21352516 -80520653 - MER31-int LTR ERV1 -1338 6199 5825 3116 224 84 67 chr13 21352851 21354822 -80518347 - MER31-int LTR ERV1 -1492 3444 1959 437 206 37 19 chr13 21355011 21355118 -80518051 - MER34 LTR ERV1 -304 238 130 425 236 75 57 chr13 21355288 21355680 -80517489 - MER31-int LTR ERV1 -374 1412 1029 369 242 0 0 chr13 21356063 21356129 -80517040 - MER31-int LTR ERV1 -7238 299 234 1610 171 0 0 chr13 21356355 21356641 -80516528 - L1P LINE L1 -3774 2372 2087 2432 256 77 26 chr13 21356725 21357425 -80515744 + MER21B LTR ERV1 98 833 -30 22 0 0 0 chr13 21357471 21357493 -80515676 + AT_rich Low_complexity Low_complexity 1 22 0 1481 139 4 0 chr13 21358096 21358333 -80514836 + L1PA13 LINE L1 5735 5972 -191 1180 268 100 33 chr13 21358940 21359369 -80513800 + MLT2B1 LTR ERVL 1 458 -62 646 247 60 11 chr13 21359783 21359965 -80513204 - MIR SINE MIR -4 258 68 625 328 37 72 chr13 21360877 21361077 -80512092 - L1MEc LINE L1 -5668 728 522 1957 153 0 0 chr13 21361077 21361365 -80511804 + AluSg SINE Alu 1 288 -22 625 328 37 72 chr13 21361365 21361676 -80511493 - L1MEc LINE L1 -5874 522 235 2532 56 0 3 chr13 21361761 21362066 -80511103 - AluY SINE Alu -7 304 1 628 127 48 8 chr13 21362407 21362533 -80510636 - L1MA2 LINE L1 0 6304 6174 1834 92 4 0 chr13 21363063 21363303 -80509866 - AluSx SINE Alu -15 297 57 266 280 93 0 chr13 21363592 21363699 -80509470 + LTR41 LTR ERVL 89 205 -568 368 198 47 28 chr13 21363900 21364006 -80509163 + LTR41 LTR ERVL 584 691 -82 5522 137 66 14 chr13 21364112 21365054 -80508115 + MSTA-int LTR MaLR 590 1580 0 1570 157 208 14 chr13 21365054 21365405 -80507764 + MSTA LTR MaLR 1 419 -9 373 310 84 25 chr13 21366023 21366226 -80506943 + L1 LINE L1 3128 3342 -2804 4999 236 59 32 chr13 21367288 21369690 -80503479 + L1PA11 LINE L1 1 3582 -4002 16681 160 20 0 chr13 21369691 21373526 -80499643 + L1PA11 LINE L1 3669 7610 -2 246 105 0 0 chr13 21373565 21373603 -80499566 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2296 95 0 3 chr13 21373977 21374271 -80498898 + AluSp SINE Alu 1 293 -20 198 333 54 27 chr13 21375060 21375171 -80497998 - L2 LINE L2 -5 3308 3195 1067 115 25 0 chr13 21375355 21375512 -80497657 + AluSg/x SINE Alu 136 296 -16 246 32 0 0 chr13 21375516 21375547 -80497622 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2333 85 7 0 chr13 21375645 21375952 -80497217 + AluSc SINE Alu 1 309 0 740 348 0 0 chr13 21376039 21376260 -80496909 - MIR SINE MIR -30 232 12 4138 244 39 66 chr13 21376579 21378220 -80494949 + L1MB8 LINE L1 19 1615 -4927 729 201 0 7 chr13 21378221 21378360 -80494809 + FRAM SINE Alu 1 132 -44 765 176 0 0 chr13 21378386 21378511 -80494658 - FLAM_C SINE Alu -18 125 1 1057 223 11 26 chr13 21378511 21378776 -80494393 + L1MB8 LINE L1 4113 4373 -2271 * 1533 257 56 21 chr13 21378773 21379345 -80493824 + L1MB8 LINE L1 4942 5533 -1111 2071 200 50 43 chr13 21379356 21379474 -80493695 + L1MB8 LINE L1 5753 5869 -813 632 184 0 64 chr13 21379474 21379615 -80493554 + FLAM_C SINE Alu 1 132 -1 2071 200 50 43 chr13 21379615 21380101 -80493068 + L1MB8 LINE L1 5869 6361 -321 403 91 0 65 chr13 21380140 21380217 -80492952 + FLAM_C SINE Alu 70 141 -2 1496 172 17 7 chr13 21380218 21380509 -80492660 + L1MB8 LINE L1 6377 6670 -6 4126 173 19 55 chr13 21380582 21381337 -80491832 + L1MB4 LINE L1 5243 5955 -225 2171 88 35 0 chr13 21381337 21381620 -80491549 + AluSg SINE Alu 1 293 -17 4126 173 19 55 chr13 21381620 21381839 -80491330 + L1MB4 LINE L1 5955 6180 0 257 202 76 8 chr13 21383325 21383444 -80489725 - L1ME4a LINE L1 -11 6110 5984 25 31 0 0 chr13 21383556 21383588 -80489581 + AT_rich Low_complexity Low_complexity 1 32 0 2404 176 36 5 chr13 21383589 21384038 -80489131 + LTR24 LTR ERV1 5 467 0 1537 233 11 31 chr13 21384038 21384558 -80488611 + LTR24-int LTR ERV1 1 651 -4472 324 375 109 14 chr13 21384582 21384857 -80488312 + PABL_B-int LTR ERV1 379 679 -6079 422 209 0 33 chr13 21384871 21384962 -80488207 + PABL_B-int LTR ERV1 654 741 -4382 246 193 11 80 chr13 21385282 21385370 -80487799 + CT-rich Low_complexity Low_complexity 3 84 0 871 333 48 30 chr13 21386884 21387385 -80485784 + PABL_B-int LTR ERV1 153 662 -3985 288 222 16 0 chr13 21387486 21387549 -80485620 + PABL_B-int LTR ERV1 4173 4236 -4683 317 331 7 42 chr13 21388585 21388727 -80484442 + PABL_B-int LTR ERV1 5633 5769 -1353 1126 334 56 26 chr13 21388997 21389640 -80483529 + PABL_B-int LTR ERV1 6014 6675 -447 2741 154 57 23 chr13 21390112 21390677 -80482492 + LTR24B LTR ERV1 3 635 0 207 377 29 0 chr13 21390888 21390957 -80482212 - L2 LINE L2 -94 3178 3108 2157 155 137 42 chr13 21391283 21391824 -80481345 + LTR49 LTR ERV1 4 595 0 226 283 98 22 chr13 21392885 21392977 -80480192 + MIR SINE MIR 50 148 -114 857 171 19 6 chr13 21393067 21393225 -80479944 + MLT1A1 LTR MaLR 1 160 -205 921 288 113 15 chr13 21393535 21393935 -80479234 - LTR16A1 LTR ERVL 0 457 19 181 380 36 15 chr13 21394450 21394587 -80478582 - L2 LINE L2 -453 2861 2722 300 170 130 80 chr13 21395820 21395920 -80477249 - MIR SINE MIR -76 186 82 2162 118 0 3 chr13 21395949 21396254 -80476915 + AluSx SINE Alu 5 308 -4 21 0 0 0 chr13 21396333 21396354 -80476815 + AT_rich Low_complexity Low_complexity 1 21 0 1999 207 40 24 chr13 21396396 21396893 -80476276 - MLT1D LTR MaLR 0 505 1 1915 105 3 99 chr13 21396956 21397288 -80475881 + AluSq SINE Alu 1 300 -13 1952 156 3 0 chr13 21398336 21398631 -80474538 + AluSx SINE Alu 1 296 -16 278 233 62 85 chr13 21399133 21399262 -80473907 - L1ME LINE L1 -5900 170 45 4218 130 24 1 chr13 21399372 21400048 -80473121 + L1PA16 LINE L1 5465 6155 -11 32 26 0 0 chr13 21400901 21400940 -80472229 + AT_rich Low_complexity Low_complexity 1 39 0 12703 173 20 96 chr13 21401021 21402476 -80470693 + L1PA7 LINE L1 10 1573 -4888 2245 127 0 0 chr13 21402476 21402784 -80470385 + AluSx SINE Alu 1 308 -4 12703 173 20 96 chr13 21402784 21403936 -80469233 + L1PA7 LINE L1 1573 2203 -4258 6732 88 15 3 chr13 21403936 21405673 -80467496 + L1PA7 LINE L1 4699 6464 -5 12703 173 20 96 chr13 21405673 21407380 -80465789 + L1PA7 LINE L1 2203 4037 -2424 581 77 0 0 chr13 21408206 21408284 -80464885 + Alu SINE Alu 1 78 -232 2205 186 19 12 chr13 21408285 21408699 -80464470 + MER47B DNA MER2_type 2 418 0 915 316 104 38 chr13 21408752 21408820 -80464349 + L1ME LINE L1 817 879 -5517 19564 114 14 2 chr13 21408820 21412708 -80460461 + L1PA8 LINE L1 2243 6172 0 915 316 104 38 chr13 21412708 21413528 -80459641 + L1ME LINE L1 879 1814 -4582 243 107 27 80 chr13 21413657 21413732 -80459437 + A-rich Low_complexity Low_complexity 5 75 0 989 267 33 11 chr13 21413765 21414228 -80458941 + L1ME LINE L1 2176 2610 -3605 2073 121 7 0 chr13 21414228 21414531 -80458638 - AluSp SINE Alu 0 305 1 431 256 81 60 chr13 21414682 21414916 -80458253 + L1ME LINE L1 2683 2921 -3294 2411 138 4 21 chr13 21414917 21415577 -80457592 - L1P4 LINE L1 -615 5548 4896 15755 97 10 0 chr13 21415597 21416326 -80456843 + L1PA7 LINE L1 3058 3778 -2376 2342 89 0 0 chr13 21416326 21416618 -80456551 + AluY SINE Alu 1 292 -19 15755 97 10 0 chr13 21416618 21418978 -80454191 + L1PA7 LINE L1 3778 6150 -4 2693 114 0 0 chr13 21418985 21419380 -80453789 + L1PA13 LINE L1 5769 6163 0 294 259 44 0 chr13 21419394 21419529 -80453640 + L1ME LINE L1 2932 3072 -3143 1056 101 0 13 chr13 21419678 21419837 -80453332 + L1PA11 LINE L1 6018 6174 0 263 146 37 61 chr13 21419857 21419939 -80453230 + L1M LINE L1 5293 5372 -792 190 403 0 0 chr13 21420309 21420386 -80452783 - L2 LINE L2 -561 2753 2677 308 219 49 18 chr13 21421052 21421216 -80451953 + (TA)n Simple_repeat Simple_repeat 2 170 0 300 198 18 135 chr13 21421252 21421363 -80451806 + MER106B DNA MER1_type 5 102 -957 1858 316 82 40 chr13 21421462 21422206 -80450963 - L2 LINE L2 -44 3269 2557 1777 167 13 60 chr13 21422206 21422252 -80450917 + MLT1A1 LTR MaLR 1 48 -317 2271 107 0 3 chr13 21422252 21422552 -80450617 - AluSc SINE Alu -10 299 1 1777 167 13 60 chr13 21422552 21422888 -80450281 + MLT1A1 LTR MaLR 48 365 0 1858 316 82 40 chr13 21422888 21423332 -80449837 - L2 LINE L2 -756 2557 888 4904 205 35 32 chr13 21423333 21424492 -80448677 + L1MCa LINE L1 4 1166 -5260 * 12312 50 2 8 chr13 21424489 21426088 -80447081 - L1PA3 LINE L1 -3647 2499 910 23387 36 5 0 chr13 21426088 21429729 -80443440 + L1PA3 LINE L1 2508 6153 -2 1781 235 64 29 chr13 21429729 21430538 -80442631 + L1MCa LINE L1 1152 2019 -4407 226 103 0 0 chr13 21430538 21430606 -80442563 - Alu SINE Alu 0 323 256 1411 154 20 20 chr13 21430610 21430856 -80442313 + AluJo SINE Alu 57 302 -10 7149 216 56 16 chr13 21430856 21432788 -80440381 + L1MCa LINE L1 2577 4585 -1841 5277 159 33 29 chr13 21432783 21433943 -80439226 + L1MA9 LINE L1 5135 6302 -10 * 4553 234 54 81 chr13 21433963 21436478 -80436691 + L1M4 LINE L1 2163 4608 -1538 213 298 0 0 chr13 21437408 21437465 -80435704 + L2 LINE L2 2583 2639 -675 193 348 76 0 chr13 21438817 21438909 -80434260 + L2 LINE L2 3180 3278 -35 259 263 113 12 chr13 21438935 21439015 -80434154 + MIR SINE MIR 172 259 -3 198 0 0 0 chr13 21439630 21439652 -80433517 + (T)n Simple_repeat Simple_repeat 1 22 0 564 386 96 6 chr13 21439735 21440333 -80432836 + L2 LINE L2 2631 3282 -31 249 57 0 0 chr13 21440336 21440371 -80432798 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 288 313 78 0 chr13 21441128 21441243 -80431926 + MIR SINE MIR 70 193 -69 28 0 0 0 chr13 21441357 21441385 -80431784 + AT_rich Low_complexity Low_complexity 1 28 0 888 333 89 43 chr13 21441576 21441677 -80431492 + L2 LINE L2 1527 1622 -1692 2368 106 0 0 chr13 21441677 21441989 -80431180 - AluSp SINE Alu -1 312 1 888 333 89 43 chr13 21441989 21442496 -80430673 + L2 LINE L2 1622 2189 -1125 2349 166 31 0 chr13 21442496 21442911 -80430258 - MSTA LTR MaLR 0 428 1 888 333 89 43 chr13 21442911 21443161 -80430008 + L2 LINE L2 2189 2426 -888 267 31 0 0 chr13 21443995 21444027 -80429142 + (TTG)n Simple_repeat Simple_repeat 2 33 0 557 250 15 8 chr13 21444061 21444193 -80428976 + ERVL LTR ERVL 1920 2052 -2944 1932 323 105 57 chr13 21444510 21446383 -80426786 + ERVL LTR ERVL 2479 4534 -1230 2453 138 44 10 chr13 21446383 21446795 -80426374 - MSTA LTR MaLR -2 426 1 1932 323 105 57 chr13 21446795 21446949 -80426220 + ERVL LTR ERVL 4534 4679 -1085 912 181 36 10 chr13 21446949 21447222 -80425947 - MLT1A2 LTR MaLR -2 372 4 501 331 23 8 chr13 21447724 21447990 -80425179 + ERVL LTR ERVL 4727 4996 0 2463 62 0 7 chr13 21448044 21448353 -80424816 + AluY SINE Alu 1 307 -4 407 265 7 52 chr13 21448353 21448484 -80424685 + LTR16B LTR ERVL 35 159 -305 659 264 64 21 chr13 21448520 21448755 -80424414 + LTR16B LTR ERVL 220 464 0 1263 296 52 28 chr13 21450197 21450879 -80422290 - L1ME3A LINE L1 -144 6095 5387 1813 160 6 6 chr13 21450946 21451258 -80421911 - AluJb SINE Alu 0 312 1 539 202 191 7 chr13 21451308 21451505 -80421664 + L1MA4 LINE L1 6067 6287 -10 1002 290 82 28 chr13 21451520 21451960 -80421209 - L1ME3A LINE L1 -2929 3286 2795 786 188 35 6 chr13 21451960 21452130 -80421039 - L1MC1 LINE L1 0 6333 6159 1002 290 82 28 chr13 21452130 21452368 -80420801 - L1ME3A LINE L1 -3420 2795 2571 383 294 19 39 chr13 21452436 21452679 -80420490 - L1MEc LINE L1 -3840 2375 2172 268 232 0 14 chr13 21452674 21452743 -80420426 - L1 LINE L1 -2191 3955 3888 * 551 308 91 14 chr13 21452790 21453076 -80420093 - MLT1I LTR MaLR -7 402 95 271 272 0 76 chr13 21453635 21453727 -80419442 - L2 LINE L2 0 3272 3188 4260 115 17 5 chr13 21454621 21455273 -80417896 - L1PA11 LINE L1 -4 6821 6162 3474 150 20 3 chr13 21455359 21456142 -80417027 - L1PA11 LINE L1 -662 6150 5359 1438 119 0 68 chr13 21456142 21456378 -80416791 - AluSc SINE Alu -9 300 81 4613 48 17 2 chr13 21456382 21456960 -80416209 - LTR14C LTR ERVK 0 587 1 982 192 35 0 chr13 21456961 21457164 -80416005 - L1PA11 LINE L1 -1436 5361 5152 * 1914 147 6 0 chr13 21457145 21457534 -80415635 - L1PA11 LINE L1 -4425 2372 1971 609 144 0 0 chr13 21457534 21457652 -80415517 + AluSg/x SINE Alu 190 307 0 657 210 64 56 chr13 21457744 21457977 -80415192 + MER106A DNA MER1_type 1 235 -1 379 313 122 26 chr13 21458263 21458493 -80414676 - MIR SINE MIR -9 253 2 527 114 13 0 chr13 21458948 21459027 -80414142 - MADE1 DNA Mariner 0 80 1 26 64 0 0 chr13 21459053 21459100 -80414069 + AT_rich Low_complexity Low_complexity 1 47 0 30 0 0 0 chr13 21459116 21459146 -80414023 + AT_rich Low_complexity Low_complexity 1 30 0 223 271 0 0 chr13 21459219 21459278 -80413891 + CT-rich Low_complexity Low_complexity 3 61 0 333 319 68 43 chr13 21459289 21459452 -80413717 - MIR SINE MIR -76 186 20 378 287 60 60 chr13 21460078 21460245 -80412924 + MER5A DNA MER1_type 7 173 -16 3156 218 22 87 chr13 21460659 21462550 -80410619 + L1ME2 LINE L1 11 2115 -4826 685 150 0 0 chr13 21462554 21462654 -80410515 + AluJ/FLAM SINE Alu 3 102 -210 216 0 0 0 chr13 21462673 21462697 -80410472 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 245 227 86 57 chr13 21462711 21462867 -80410302 + L1ME2 LINE L1 2225 2421 -4557 253 333 61 56 chr13 21463136 21463367 -80409802 - L2 LINE L2 -850 2464 2233 909 104 0 8 chr13 21463380 21463545 -80409624 - AluSg/x SINE Alu 0 322 159 2068 109 23 3 chr13 21463562 21463866 -80409303 + AluSx SINE Alu 3 312 0 250 406 64 5 chr13 21464242 21464429 -80408740 + MLT1K LTR MaLR 189 386 -202 325 148 25 25 chr13 21464478 21464559 -80408610 + CT-rich Low_complexity Low_complexity 2 82 0 22 94 0 0 chr13 21465333 21465397 -80407772 + AT_rich Low_complexity Low_complexity 1 64 0 210 154 0 0 chr13 21465582 21465621 -80407548 + T-rich Low_complexity Low_complexity 3 41 0 216 281 0 0 chr13 21465628 21465685 -80407484 + L2 LINE L2 3215 3271 -1 537 181 0 0 chr13 21465919 21466096 -80407073 + (TA)n Simple_repeat Simple_repeat 1 177 0 300 183 215 0 chr13 21466568 21466580 -80406589 - L1MA4A LINE L1 0 6303 6292 1435 171 96 42 chr13 21466580 21466936 -80406233 - L1PB4 LINE L1 -5 6151 5777 4296 225 59 57 chr13 21467049 21468005 -80405164 + L1ME2 LINE L1 4415 5368 -1591 1816 181 0 0 chr13 21468005 21468303 -80404866 - AluJo SINE Alu -14 298 1 4296 225 59 57 chr13 21468303 21469396 -80403773 + L1ME2 LINE L1 5368 6469 -490 2098 134 0 0 chr13 21469396 21469695 -80403474 + AluSx SINE Alu 4 302 -10 4296 225 59 57 chr13 21469695 21470078 -80403091 + L1ME2 LINE L1 6469 6850 -109 244 172 35 0 chr13 21470080 21470138 -80403031 + Charlie4 DNA MER1_type 1840 1899 -62 23 0 0 0 chr13 21471071 21471094 -80402075 + AT_rich Low_complexity Low_complexity 1 23 0 206 146 24 0 chr13 21471110 21471124 -80402045 + (TA)n Simple_repeat Simple_repeat 2 14 -29 189 0 0 0 chr13 21471124 21471145 -80402024 + (GA)n Simple_repeat Simple_repeat 2 22 0 206 146 24 0 chr13 21471145 21471171 -80401998 + (TA)n Simple_repeat Simple_repeat 14 43 0 2937 89 1 1 chr13 21471449 21472064 -80401105 + PABL_A LTR ERV1 1 660 0 1748 276 80 25 chr13 21473202 21474203 -80398966 - L1MEc LINE L1 -4098 2727 1510 498 33 0 0 chr13 21474203 21474263 -80398906 + (TG)n Simple_repeat Simple_repeat 1 60 0 1748 276 80 25 chr13 21474263 21474319 -80398850 - L1MEc LINE L1 -5315 1510 1459 1315 267 126 20 chr13 21474340 21475000 -80398169 - L1MEc LINE L1 -5290 1535 806 433 257 103 17 chr13 21475060 21475235 -80397934 - L1MEc LINE L1 -6170 655 466 242 258 15 0 chr13 21476214 21476280 -80396889 + (TA)n Simple_repeat Simple_repeat 2 68 0 320 216 62 72 chr13 21476280 21476377 -80396792 - L1MC4 LINE L1 -1334 6708 6613 29 47 0 0 chr13 21476399 21476442 -80396727 + AT_rich Low_complexity Low_complexity 1 43 0 1928 119 20 20 chr13 21476494 21476787 -80396382 - AluSx SINE Alu -19 293 1 1598 225 54 61 chr13 21477775 21478335 -80394834 - MER74B LTR ERVL -14 608 53 248 292 0 15 chr13 21480234 21480299 -80392870 - L2 LINE L2 0 3313 3250 22 0 0 0 chr13 21480756 21480778 -80392391 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 21481024 21481052 -80392117 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 21481364 21481390 -80391779 + AT_rich Low_complexity Low_complexity 1 26 0 3645 134 45 0 chr13 21481994 21482597 -80390572 + L1MC1 LINE L1 5704 6333 0 289 309 32 16 chr13 21485617 21485740 -80387429 + L2 LINE L2 3148 3272 0 994 318 172 32 chr13 21487478 21488351 -80384818 + L2 LINE L2 685 1679 -1635 193 235 0 0 chr13 21488406 21488457 -80384712 + L2 LINE L2 3263 3313 0 195 218 0 0 chr13 21488480 21488535 -80384634 + (TG)n Simple_repeat Simple_repeat 1 55 0 1992 131 20 0 chr13 21488751 21489056 -80384113 - AluY SINE Alu 0 311 1 26 50 0 0 chr13 21489138 21489178 -80383991 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chr13 21490718 21490741 -80382428 + (TTA)n Simple_repeat Simple_repeat 2 24 0 354 207 11 11 chr13 21490966 21491053 -80382116 + L1ME LINE L1 5548 5634 -487 215 324 0 63 chr13 21491503 21491614 -80381555 + MIR3 SINE MIR 2 105 -103 522 98 76 0 chr13 21492322 21492414 -80380755 - Tigger2 DNA MER2_type -187 2531 2433 275 243 233 0 chr13 21493656 21493759 -80379410 + HsTC2 DNA Tc2 1 127 -1771 357 296 61 8 chr13 21493811 21493943 -80379226 + HsTC2 DNA Tc2 1159 1297 -601 227 272 107 0 chr13 21493948 21494051 -80379118 + HsTC2 DNA Tc2 1638 1751 -147 2057 137 78 6 chr13 21494207 21494566 -80378603 - Tigger2 DNA MER2_type 0 2718 2334 189 0 0 0 chr13 21494697 21494718 -80378451 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 21494718 21494740 -80378429 + AT_rich Low_complexity Low_complexity 1 22 0 425 169 90 0 chr13 21496179 21496268 -80376901 - MLT1L LTR MaLR -12 603 507 208 202 170 43 chr13 21496295 21496389 -80376780 + MIR SINE MIR 157 262 0 24 32 0 0 chr13 21496533 21496564 -80376605 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 21496775 21496798 -80376371 + AT_rich Low_complexity Low_complexity 1 23 0 217 132 0 0 chr13 21499103 21499141 -80374028 + (T)n Simple_repeat Simple_repeat 1 38 0 689 80 0 0 chr13 21499165 21499253 -80373916 - AluSc SINE Alu -116 193 106 1662 178 60 21 chr13 21499790 21500122 -80373047 + MER7A DNA MER2_type 2 344 -2 290 301 97 57 chr13 21500215 21500391 -80372778 - MER5A DNA MER1_type -4 185 3 5176 59 23 13 chr13 21500551 21501242 -80371927 + SVA Other Other 688 1385 -1 21 0 0 0 chr13 21502792 21502813 -80370356 + AT_rich Low_complexity Low_complexity 1 21 0 330 284 113 28 chr13 21503222 21503363 -80369806 - MIR SINE MIR -25 237 85 28 0 0 0 chr13 21504405 21504433 -80368736 + AT_rich Low_complexity Low_complexity 1 28 0 1769 157 193 0 chr13 21504689 21505052 -80368117 - Tigger2a DNA MER2_type -1 433 1 1782 117 79 41 chr13 21506103 21506444 -80366725 - HSMAR2 DNA Mariner -1 1301 948 7206 193 16 14 chr13 21506444 21508032 -80365137 - L1 LINE L1 -1435 4711 3121 6353 136 8 10 chr13 21508033 21509446 -80363723 + L1PB1 LINE L1 4747 6150 -1 6098 141 8 1 chr13 21509456 21510413 -80362756 - HSMAR2 DNA Mariner -337 965 2 1041 205 5 38 chr13 21510442 21510652 -80362517 - AluJo SINE Alu -25 287 85 367 292 52 36 chr13 21511137 21511329 -80361840 - MIR SINE MIR -57 205 11 2239 204 87 59 chr13 21511576 21511902 -80361267 + LTR8A LTR ERV1 34 349 -378 202 28 28 28 chr13 21511902 21511938 -80361231 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2239 204 87 59 chr13 21511938 21512286 -80360883 + LTR8A LTR ERV1 349 727 0 23 0 0 0 chr13 21512470 21512493 -80360676 + AT_rich Low_complexity Low_complexity 1 23 0 652 232 0 0 chr13 21512520 21512658 -80360511 - FLAM_C SINE Alu -3 140 3 2017 224 54 6 chr13 21513018 21513555 -80359614 + L1M4 LINE L1 3629 4191 -1955 1425 186 12 81 chr13 21514123 21514456 -80358713 - MLT1B LTR MaLR -15 375 66 214 295 211 21 chr13 21515658 21515848 -80357321 - MIR SINE MIR -6 256 31 1447 221 28 36 chr13 21516004 21516361 -80356808 - MLT1A1 LTR MaLR -11 354 1 1303 133 0 84 chr13 21516396 21516645 -80356524 - AluJo SINE Alu 0 312 85 873 230 119 13 chr13 21517248 21517474 -80355695 - MIR SINE MIR -1 261 12 857 219 16 65 chr13 21517962 21518208 -80354961 - MLT1A1 LTR MaLR -5 360 127 206 290 187 9 chr13 21519142 21519249 -80353920 + L2 LINE L2 3139 3264 -8 229 238 262 0 chr13 21519542 21519626 -80353543 - LTR24B LTR ERV1 -7 569 464 528 152 20 20 chr13 21519838 21519937 -80353232 - LTR24B LTR ERV1 -474 102 4 192 165 0 35 chr13 21519948 21520033 -80353136 + (CATTT)n Simple_repeat Simple_repeat 2 83 0 260 189 0 28 chr13 21520068 21520211 -80352958 + (CATTT)n Simple_repeat Simple_repeat 2 140 0 252 246 0 29 chr13 21520223 21520361 -80352808 + T-rich Low_complexity Low_complexity 3 136 0 830 269 56 41 chr13 21520410 21520752 -80352417 + L1ME LINE L1 5412 5758 -363 21 0 0 0 chr13 21520848 21520869 -80352300 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 21520899 21520936 -80352233 + AT_rich Low_complexity Low_complexity 1 37 0 2599 314 89 16 chr13 21521522 21522961 -80350208 - L2 LINE L2 0 3313 1767 4445 177 34 26 chr13 21523122 21524329 -80348840 - L1MB2 LINE L1 -2 6885 5672 2246 109 0 3 chr13 21524329 21524641 -80348528 - AluSx SINE Alu -1 311 1 4445 177 34 26 chr13 21524641 21524738 -80348431 - L1MB2 LINE L1 -1215 5672 5577 299 259 47 12 chr13 21525439 21525524 -80347645 - MIR SINE MIR 0 262 175 6475 164 49 20 chr13 21526140 21529704 -80343465 - L1MB2 LINE L1 -3091 3771 1 842 136 28 51 chr13 21529696 21529873 -80343296 - L1P LINE L1 -966 5180 5008 * 333 319 68 43 chr13 21530181 21530344 -80342825 + MIR SINE MIR 20 186 -76 223 271 0 0 chr13 21530355 21530414 -80342755 + GA-rich Low_complexity Low_complexity 3 61 0 30 0 0 0 chr13 21530487 21530517 -80342652 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr13 21530533 21530580 -80342589 + AT_rich Low_complexity Low_complexity 1 47 0 527 114 13 0 chr13 21530606 21530685 -80342484 + MADE1 DNA Mariner 1 80 0 379 313 122 26 chr13 21531140 21531370 -80341799 + MIR SINE MIR 2 253 -9 657 210 64 56 chr13 21531656 21531889 -80341280 - MER106A DNA MER1_type -1 235 1 608 144 0 0 chr13 21531981 21532099 -80341070 - AluSg/x SINE Alu 0 308 191 1914 146 7 0 chr13 21532099 21532469 -80340700 + L1PA11 LINE L1 1971 2353 -4444 6227 98 19 0 chr13 21532469 21534102 -80339067 + L1PA11 LINE L1 5152 6823 -2 246 105 0 0 chr13 21534140 21534178 -80338991 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2261 95 0 3 chr13 21534552 21534846 -80338323 + AluSp SINE Alu 1 293 -20 204 333 54 27 chr13 21535635 21535746 -80337423 - L2 LINE L2 -5 3308 3195 1043 115 25 0 chr13 21535930 21536087 -80337082 + AluSg/x SINE Alu 136 296 -16 246 32 0 0 chr13 21536091 21536122 -80337047 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2297 85 7 0 chr13 21536220 21536527 -80336642 + AluSc SINE Alu 1 309 0 746 348 0 0 chr13 21536614 21536835 -80336334 - MIR SINE MIR -30 232 12 4221 246 38 65 chr13 21537154 21538795 -80334374 + L1M3 LINE L1 19 1615 -4927 613 212 15 7 chr13 21538796 21538933 -80334236 + FRAM SINE Alu 1 132 -44 707 168 8 8 chr13 21538961 21539086 -80334083 - FLAM_C SINE Alu -18 125 1 1016 231 15 26 chr13 21539086 21539350 -80333819 + L1M3 LINE L1 4113 4373 -2271 * 1593 258 56 21 chr13 21539345 21539919 -80333250 + L1M3 LINE L1 4940 5533 -1111 563 147 44 118 chr13 21539930 21540048 -80333121 + L1M3 LINE L1 5753 5851 -827 614 183 0 70 chr13 21540048 21540190 -80332979 + FLAM_C SINE Alu 1 132 -1 563 147 44 118 chr13 21540190 21540275 -80332894 + L1M3 LINE L1 5851 5941 -737 24 0 0 0 chr13 21540378 21540402 -80332767 + AT_rich Low_complexity Low_complexity 1 24 0 2102 91 18 0 chr13 21540588 21540887 -80332282 - AluSq SINE Alu 0 307 4 2394 71 3 0 chr13 21540964 21541261 -80331908 - AluSp SINE Alu -15 298 1 184 361 14 0 chr13 21541511 21541583 -80331586 + L2 LINE L2 3185 3257 -15 595 257 209 26 chr13 21541784 21542095 -80331074 + LTR16C LTR ERVL 36 403 -88 21 36 0 0 chr13 21542181 21542209 -80330960 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr13 21543775 21543808 -80329361 + AT_rich Low_complexity Low_complexity 1 33 0 2797 0 0 3 chr13 21543860 21544168 -80329001 + AluYa5 SINE Alu 1 307 -4 21 0 0 0 chr13 21544314 21544335 -80328834 + AT_rich Low_complexity Low_complexity 1 21 0 1625 142 16 84 chr13 21545253 21545564 -80327605 + AluSx SINE Alu 1 290 -22 23 68 0 0 chr13 21546295 21546339 -80326830 + AT_rich Low_complexity Low_complexity 1 44 0 811 266 175 47 chr13 21547497 21547948 -80325221 - MLT1J LTR MaLR -2 509 1 795 235 16 11 chr13 21548999 21549186 -80323983 - MER5A DNA MER1_type 0 189 2 2298 84 0 3 chr13 21549763 21550060 -80323109 + AluSg SINE Alu 2 297 -13 199 355 25 25 chr13 21551151 21551272 -80321897 - L2 LINE L2 -339 2933 2813 244 286 76 8 chr13 21551606 21551725 -80321444 - LTR33A LTR ERVL -2 521 395 282 116 0 0 chr13 21551885 21551928 -80321241 + (CTG)n Simple_repeat Simple_repeat 1 43 0 1813 339 75 24 chr13 21552548 21553679 -80319490 - HERVL LTR ERVL -293 5361 4173 600 297 78 14 chr13 21553678 21553897 -80319272 - HERVL LTR ERVL -2553 3211 2979 * 753 310 115 38 chr13 21553999 21554914 -80318255 - HERVL LTR ERVL -2779 2875 1919 295 191 16 0 chr13 21556791 21556854 -80316315 - L1ME LINE L1 -253 5868 5805 337 198 49 25 chr13 21557127 21557208 -80315961 + L2 LINE L2 3227 3309 -4 210 330 45 23 chr13 21557293 21557381 -80315788 - MIR SINE MIR -102 106 17 25 51 0 0 chr13 21557458 21557497 -80315672 + AT_rich Low_complexity Low_complexity 1 39 0 391 257 5 102 chr13 21557762 21557949 -80315220 + L1ME LINE L1 1201 1369 -5578 2394 70 0 0 chr13 21558039 21558340 -80314829 - AluY SINE Alu -10 301 1 544 328 48 34 chr13 21558542 21559350 -80313819 + L1ME LINE L1 1331 2323 -4815 180 0 0 0 chr13 21559762 21559782 -80313387 + (A)n Simple_repeat Simple_repeat 1 20 0 841 294 70 46 chr13 21560165 21560733 -80312436 + L1ME3 LINE L1 393 974 -5096 * 2480 262 75 29 chr13 21560722 21560995 -80312174 + L1ME3 LINE L1 3812 4071 -2009 342 98 0 0 chr13 21560995 21561046 -80312123 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2480 262 75 29 chr13 21561046 21561926 -80311243 + L1ME3 LINE L1 4071 5018 -1062 329 298 13 13 chr13 21562052 21562210 -80310959 + L1ME3 LINE L1 5001 5158 -922 1291 229 108 25 chr13 21562236 21562745 -80310424 + L1ME3 LINE L1 5247 5794 -306 411 233 20 100 chr13 21562865 21563015 -80310154 + L1ME3 LINE L1 5838 5975 -121 33 66 0 0 chr13 21563015 21563076 -80310093 + AT_rich Low_complexity Low_complexity 1 61 0 25 65 0 0 chr13 21563137 21563183 -80309986 + AT_rich Low_complexity Low_complexity 1 46 0 235 175 16 63 chr13 21563342 21563405 -80309764 + MIR SINE MIR 154 213 -49 25 0 0 0 chr13 21564821 21564846 -80308323 + AT_rich Low_complexity Low_complexity 1 25 0 369 280 37 0 chr13 21564846 21564953 -80308216 + MIR SINE MIR 141 251 -11 1500 164 41 11 chr13 21565092 21565361 -80307808 - AluJo SINE Alu -35 277 1 2780 153 40 17 chr13 21565734 21566265 -80306904 + L1MC1 LINE L1 5780 6322 -11 1039 46 8 0 chr13 21566942 21567072 -80306097 - AluY SINE Alu -8 303 173 650 198 95 107 chr13 21567299 21567542 -80305627 + MER57B LTR ERV1 1 269 -163 2493 148 8 0 chr13 21567587 21567980 -80305189 - MER57A LTR ERV1 0 403 8 586 151 49 15 chr13 21567982 21568166 -80305003 - MER57A-int LTR ERV1 0 7537 7277 731 129 26 0 chr13 21568175 21568291 -80304878 - LTR54B LTR ERV1 -377 121 3 1916 151 14 0 chr13 21568305 21568584 -80304585 + AluSx SINE Alu 1 283 -29 7453 167 13 10 chr13 21568584 21569874 -80303295 - MER57A-int LTR ERV1 -419 7118 5825 6335 158 10 28 chr13 21570169 21570579 -80302590 - MER57A-int LTR ERV1 -1688 5849 5433 2366 85 0 0 chr13 21570579 21570874 -80302295 - AluSg SINE Alu -15 295 1 6335 158 10 28 chr13 21570874 21571630 -80301539 - MER57A-int LTR ERV1 -2104 5433 4704 603 62 0 0 chr13 21571630 21571710 -80301459 + AluSg/x SINE Alu 217 296 -13 369 143 0 14 chr13 21571799 21571869 -80301300 + LTR23-int LTR ERV1 951 1019 -4104 2011 171 56 107 chr13 21571875 21572711 -80300458 - MER57A-int LTR ERV1 -2151 4180 1548 373 231 64 39 chr13 21572711 21572914 -80300255 - MER57A-int LTR ERV1 -3023 1913 1706 779 151 19 159 chr13 21573027 21573285 -80299884 - MER57A-int LTR ERV1 -2879 3452 3231 383 242 55 35 chr13 21573428 21573688 -80299481 - MER57A-int LTR ERV1 -3659 1978 1097 331 133 33 0 chr13 21573733 21573793 -80299376 - MER34C LTR ERV1 -369 216 155 2427 71 0 0 chr13 21573918 21574229 -80298940 - AluY SINE Alu 0 311 1 3975 203 13 31 chr13 21574346 21575204 -80297965 - MER57A-int LTR ERV1 -6695 842 1 605 193 0 0 chr13 21575204 21575313 -80297856 - MER57A LTR ERV1 0 403 295 1070 124 16 38 chr13 21575326 21575511 -80297658 - MER61A LTR ERV1 -1 342 162 408 83 0 12 chr13 21575632 21575751 -80297418 - MER61A LTR ERV1 -190 153 3 349 217 0 0 chr13 21575751 21575819 -80297350 + AluJ/FRAM SINE Alu 234 301 -1 959 294 22 45 chr13 21575851 21576521 -80296648 + MER57-int LTR ERV1 2357 6179 -1358 248 265 172 37 chr13 21577364 21577579 -80295590 + HAL1b LINE L1 1049 1292 -56 406 323 16 8 chr13 21579140 21579264 -80293905 + MIR SINE MIR 23 147 -115 6126 69 1 0 chr13 21581035 21581827 -80291342 - L1PA7 LINE L1 -7 6147 5355 * 8567 77 25 35 chr13 21581825 21583120 -80290049 + L1PA7 LINE L1 4073 5354 -792 2279 190 50 0 chr13 21584243 21584743 -80288426 - L1MB3 LINE L1 0 6183 5659 1574 163 0 83 chr13 21584839 21585176 -80287993 + AluJo SINE Alu 1 309 -3 21 36 0 0 chr13 21585196 21585224 -80287945 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr13 21585243 21585271 -80287898 + AT_rich Low_complexity Low_complexity 1 28 0 299 378 65 29 chr13 21585410 21585685 -80287484 - L2 LINE L2 -181 3091 2807 244 333 26 51 chr13 21587163 21587210 -80285959 + L2 LINE L2 3121 3168 -104 1654 219 22 3 chr13 21587210 21587566 -80285603 - MLT1A1 LTR MaLR 0 365 3 244 333 26 51 chr13 21587566 21587674 -80285495 + L2 LINE L2 3168 3272 0 2264 247 30 35 chr13 21587721 21588324 -80284845 - MER90 LTR ERV1 -14 600 1 200 296 99 25 chr13 21589286 21589367 -80283802 - L2 LINE L2 0 3272 3186 1142 174 13 49 chr13 21589456 21589520 -80283649 - MLT1D LTR MaLR -3 502 437 1854 142 0 0 chr13 21589520 21589794 -80283375 + AluSx SINE Alu 17 290 -22 1142 174 13 49 chr13 21589794 21589953 -80283216 - MLT1D LTR MaLR -68 437 287 5639 190 66 15 chr13 21590001 21591983 -80281186 - L1MC1 LINE L1 0 6333 4243 616 142 14 170 chr13 21592048 21592260 -80280909 - MLT1D LTR MaLR -446 180 2 256 397 17 9 chr13 21592821 21592937 -80280232 + L2 LINE L2 3154 3270 -2 752 284 96 11 chr13 21593582 21593864 -80279305 + L2 LINE L2 2534 2839 -475 667 163 8 0 chr13 21594870 21594993 -80278176 - L1MB8 LINE L1 -2 6176 6053 2268 102 3 0 chr13 21594993 21595298 -80277871 - AluSq SINE Alu -7 306 1 2283 225 90 21 chr13 21595299 21596369 -80276800 - L1ME1 LINE L1 -201 5965 4813 803 115 0 0 chr13 21596369 21596482 -80276687 - AluJb SINE Alu -197 115 3 753 212 45 20 chr13 21596482 21596680 -80276489 - L1ME1 LINE L1 -1327 4819 4617 380 294 183 0 chr13 21597641 21597767 -80275402 - MER5A DNA MER1_type 0 189 41 233 346 77 6 chr13 21598150 21598332 -80274837 - L1MC1 LINE L1 -1897 4249 4055 224 151 0 19 chr13 21598393 21598446 -80274723 + CT-rich Low_complexity Low_complexity 1 52 0 192 125 0 0 chr13 21598457 21598489 -80274680 + (TATATG)n Simple_repeat Simple_repeat 1 32 0 1188 262 19 32 chr13 21598722 21599096 -80274073 - L1ME1 LINE L1 -4 6162 5794 240 91 5 0 chr13 21599292 21599339 -80273830 - L1M4 LINE L1 -1136 5010 4963 215 149 64 0 chr13 21599621 21599668 -80273501 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 22 0 0 0 chr13 21600408 21600430 -80272739 + AT_rich Low_complexity Low_complexity 1 22 0 238 303 138 0 chr13 21600970 21601115 -80272054 + MLT1J2 LTR MaLR 45 209 -241 893 127 0 8 chr13 21601319 21601453 -80271716 - AluSq/x SINE Alu -180 133 1 1912 111 37 20 chr13 21602143 21602441 -80270728 + AluSq SINE Alu 1 303 -10 232 350 26 8 chr13 21603558 21603675 -80269494 - L2 LINE L2 -1 3312 3194 208 163 23 0 chr13 21603789 21603832 -80269337 + CT-rich Low_complexity Low_complexity 1 44 0 324 257 0 29 chr13 21603864 21603934 -80269235 + MIR SINE MIR 31 98 -164 1541 288 52 16 chr13 21603960 21604534 -80268635 + MLT1H1 LTR MaLR 6 555 0 3833 145 107 116 chr13 21604541 21605887 -80267282 + pTR5 LTR ERV1 743 2397 -41 351 336 29 72 chr13 21606152 21606360 -80266809 - L3 LINE CR1 -18 1559 1361 241 318 0 0 chr13 21607348 21607411 -80265758 + MIR SINE MIR 89 151 -57 5980 107 23 2 chr13 21607842 21608964 -80264205 + L1PA13 LINE L1 5017 6153 -10 588 331 0 0 chr13 21609155 21609318 -80263851 - L2 LINE L2 -962 2352 2190 627 320 184 35 chr13 21609474 21609984 -80263185 - L2 LINE L2 -1926 1388 803 1963 142 0 25 chr13 21610004 21610320 -80262849 + AluSq SINE Alu 1 308 -5 341 318 85 23 chr13 21611162 21611338 -80261831 - L1MC5 LINE L1 -48 7913 7727 2473 196 20 2 chr13 21611523 21612029 -80261140 - L1MD1 LINE L1 0 6242 5728 1238 292 12 8 chr13 21612135 21612614 -80260555 - L1MDa LINE L1 -2533 4007 3527 6924 209 108 87 chr13 21612674 21613787 -80259382 - L1MDa LINE L1 -3687 2853 1765 1022 158 25 0 chr13 21613787 21613945 -80259224 - FRAM SINE Alu -15 161 1 6924 209 108 87 chr13 21613945 21615428 -80257741 - L1MDa LINE L1 -4775 1765 26 26 30 0 0 chr13 21616620 21616653 -80256516 + AT_rich Low_complexity Low_complexity 1 33 0 939 297 45 3 chr13 21618751 21619105 -80254064 - L1M4 LINE L1 -1031 5115 4747 347 172 0 0 chr13 21619111 21619169 -80254000 + Tigger1 DNA MER2_type 1 58 -2360 206 200 0 0 chr13 21619172 21619207 -80253962 + polypyrimidine Low_complexity Low_complexity 2 36 0 497 250 0 9 chr13 21619214 21619326 -80253843 + Tigger1 DNA MER2_type 1028 1138 -1280 7570 163 38 8 chr13 21619327 21620657 -80252512 + Tigger1 DNA MER2_type 67 1436 -982 4502 136 33 11 chr13 21620641 21621391 -80251778 + Tigger1 DNA MER2_type 1652 2418 0 * 845 258 46 27 chr13 21621397 21621769 -80251400 - L1M4 LINE L1 -1410 4736 4358 * 2658 265 93 94 chr13 21621752 21622132 -80251037 - L1MEc LINE L1 -4260 2136 1757 2303 218 92 19 chr13 21622132 21622773 -80250396 - MER76 LTR ERV 0 688 1 2658 265 93 94 chr13 21622773 21623681 -80249488 - L1MEc LINE L1 -4639 1757 850 1319 151 75 86 chr13 21623681 21623973 -80249196 - AluSx SINE Alu -23 289 1 2658 265 93 94 chr13 21623973 21624778 -80248391 - L1MEc LINE L1 -5546 850 45 251 337 10 10 chr13 21675005 21675103 -80198066 - MLT1A2 LTR MaLR -91 283 186 22 0 0 0 chr13 21675543 21675565 -80197604 + AT_rich Low_complexity Low_complexity 1 22 0 1818 142 0 51 chr13 21676327 21676653 -80196516 - AluSx SINE Alu 0 313 3 1078 155 225 5 chr13 21676757 21677098 -80196071 + MSTB1 LTR MaLR 1 457 0 1045 160 0 0 chr13 21677245 21677414 -80195755 + FRAM SINE Alu 1 168 -8 854 111 8 0 chr13 21677481 21677607 -80195562 + L1PA15 LINE L1 5828 5954 -211 2757 95 21 37 chr13 21677607 21677661 -80195508 - MLT2A1 LTR ERVL 0 444 391 403 33 33 0 chr13 21677661 21677722 -80195447 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2757 95 21 37 chr13 21677722 21678098 -80195071 - MLT2A1 LTR ERVL -53 391 21 1163 174 9 5 chr13 21678102 21678320 -80194849 + L1PA15 LINE L1 5947 6165 0 1219 184 4 4 chr13 21679789 21680023 -80193146 - L1PA16 LINE L1 -5 6161 5928 1184 280 88 34 chr13 21680176 21680685 -80192484 - L2 LINE L2 0 3313 2787 203 340 113 14 chr13 21680787 21680928 -80192241 - L2 LINE L2 0 3313 3159 2049 129 10 0 chr13 21681058 21681352 -80191817 + AluSx SINE Alu 2 298 -14 749 288 52 9 chr13 21681434 21681663 -80191506 - MIR SINE MIR -10 252 14 23 0 0 0 chr13 21682609 21682632 -80190537 + AT_rich Low_complexity Low_complexity 1 23 0 378 0 0 0 chr13 21682647 21682689 -80190480 + (TG)n Simple_repeat Simple_repeat 2 43 0 595 271 34 83 chr13 21682843 21683109 -80190060 + MIR SINE MIR 10 262 0 1710 136 73 17 chr13 21683547 21683848 -80189321 - THE1C LTR MaLR -55 320 3 22 0 0 0 chr13 21684340 21684362 -80188807 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr13 21684466 21684496 -80188673 + (A)n Simple_repeat Simple_repeat 1 30 0 700 196 8 8 chr13 21684731 21684864 -80188305 - FLAM_A SINE Alu 0 133 1 228 310 15 31 chr13 21685184 21685310 -80187859 + MIR SINE MIR 5 131 -77 515 312 13 13 chr13 21685339 21685496 -80187673 + MIR SINE MIR 12 168 -94 6947 134 39 20 chr13 21686585 21686630 -80186539 + Tigger3b DNA MER2_type 1 44 -2984 2055 117 0 0 chr13 21686630 21686943 -80186226 + AluSc SINE Alu 1 313 0 6947 134 39 20 chr13 21686943 21688090 -80185079 + Tigger3b DNA MER2_type 44 1217 -14 505 325 32 30 chr13 21688946 21689166 -80184003 - MIR SINE MIR -16 246 28 6769 65 9 13 chr13 21690402 21691311 -80181858 - L1PA8 LINE L1 0 6172 5268 338 143 18 0 chr13 21691304 21691360 -80181809 + L1PA8 LINE L1 5206 5262 -884 * 307 242 0 15 chr13 21691704 21691770 -80181399 - L2 LINE L2 0 3313 3249 260 326 169 62 chr13 21692560 21692738 -80180431 + L2 LINE L2 3076 3272 0 1519 228 19 16 chr13 21693137 21693514 -80179655 - MLT1D LTR MaLR 0 505 128 288 291 19 0 chr13 21693542 21693645 -80179524 + L1MC4a LINE L1 4887 4991 -1155 1834 147 5 97 chr13 21693858 21694239 -80178930 - MER7A DNA MER2_type -1 345 2 1184 269 117 76 chr13 21694275 21695607 -80177562 + L1MC4a LINE L1 5319 6705 -1103 818 298 55 30 chr13 21695615 21696044 -80177125 - LTR16B LTR ERVL 0 464 1 342 237 26 0 chr13 21696047 21696123 -80177046 + L1MC4 LINE L1 6799 6876 -1166 5025 144 27 2 chr13 21696134 21697324 -80175845 + L1PA16 LINE L1 4954 6165 -1 21 57 0 0 chr13 21697361 21697396 -80175773 + AT_rich Low_complexity Low_complexity 1 35 0 2002 130 3 0 chr13 21697398 21697691 -80175478 + AluSp SINE Alu 1 294 -19 27 0 0 0 chr13 21697696 21697723 -80175446 + AT_rich Low_complexity Low_complexity 1 27 0 209 242 70 96 chr13 21697779 21697936 -80175233 + MIR3 SINE MIR 44 196 -12 303 241 69 11 chr13 21699078 21699165 -80174004 - L2 LINE L2 -32 3281 3190 220 262 14 83 chr13 21699165 21699310 -80173859 + L2 LINE L2 2372 2506 -808 2061 87 4 11 chr13 21699328 21699629 -80173540 - AluSx SINE Alu 0 305 7 214 270 32 0 chr13 21700424 21700487 -80172682 + L2 LINE L2 3207 3271 -1 660 332 59 59 chr13 21701678 21702172 -80170997 + L3 LINE CR1 1063 1556 -21 200 263 0 0 chr13 21703770 21703808 -80169361 + polypurine Low_complexity Low_complexity 6 43 0 271 238 75 116 chr13 21703957 21704104 -80169065 - MIR SINE MIR -22 240 100 22 80 0 0 chr13 21705048 21705098 -80168071 + AT_rich Low_complexity Low_complexity 1 50 0 399 273 136 26 chr13 21705566 21705720 -80167449 - L2 LINE L2 -5 3308 3138 277 358 22 15 chr13 21705739 21705873 -80167296 + MER115 DNA AcHobo 13 147 -546 2110 138 3 0 chr13 21706058 21706354 -80166815 - AluSq SINE Alu -16 297 1 339 219 64 11 chr13 21706363 21706525 -80166644 + LTR37A LTR ERV1 111 280 -188 201 226 0 0 chr13 21706548 21706601 -80166568 + (TA)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr13 21706754 21706784 -80166385 + AT_rich Low_complexity Low_complexity 1 30 0 209 368 96 0 chr13 21706784 21706920 -80166249 - L2 LINE L2 -230 3083 2935 22 0 0 0 chr13 21707255 21707277 -80165892 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 21707406 21707428 -80165741 + AT_rich Low_complexity Low_complexity 1 22 0 609 215 23 8 chr13 21707509 21707639 -80165530 - MSTD LTR MaLR -1 395 264 503 219 29 0 chr13 21707697 21707799 -80165370 - MSTD LTR MaLR -244 152 48 1851 184 72 3 chr13 21707799 21708158 -80165011 + MSTA LTR MaLR 1 384 -44 567 179 0 0 chr13 21708158 21708242 -80164927 - AluS SINE Alu -227 85 2 1479 131 0 0 chr13 21708242 21708448 -80164721 + AluSg/x SINE Alu 83 288 -22 265 174 0 0 chr13 21708470 21708516 -80164653 + MSTA LTR MaLR 383 428 0 405 77 0 0 chr13 21708516 21708568 -80164601 - MSTD LTR MaLR -344 52 1 486 0 0 0 chr13 21709989 21710043 -80163126 + (TG)n Simple_repeat Simple_repeat 2 55 0 688 293 101 77 chr13 21710204 21710549 -80162620 - L2 LINE L2 -5 3308 2948 825 206 61 88 chr13 21710549 21710957 -80162212 + MLT2C1 LTR ERVL 1 397 0 688 293 101 77 chr13 21710957 21711068 -80162101 - L2 LINE L2 -365 2948 2841 393 239 11 0 chr13 21711093 21711181 -80161988 - L2 LINE L2 -990 2324 2236 1666 218 43 5 chr13 21712992 21713363 -80159806 - MLT1B LTR MaLR 0 390 6 877 152 18 0 chr13 21714081 21714246 -80158923 - L1MA6 LINE L1 0 6300 6133 900 179 28 9 chr13 21714400 21714612 -80158557 - L1MA7 LINE L1 -9 6282 6067 21 0 0 0 chr13 21715715 21715736 -80157433 + AT_rich Low_complexity Low_complexity 1 21 0 208 380 40 20 chr13 21715982 21716082 -80157087 - MIR3 SINE MIR -97 111 10 4175 161 150 79 chr13 21716837 21717400 -80155769 + L1MC3 LINE L1 6495 7016 -769 292 291 0 0 chr13 21717400 21717479 -80155690 + MLT1F1 LTR MaLR 46 124 -443 4175 161 150 79 chr13 21717479 21718027 -80155142 + L1MC3 LINE L1 7016 7769 -16 318 212 51 68 chr13 21718055 21718173 -80154996 - L1MC4 LINE L1 -1338 6704 6589 223 317 33 0 chr13 21718219 21718279 -80154890 + L2 LINE L2 3173 3234 -38 1805 163 3 29 chr13 21718281 21718587 -80154582 - AluJo SINE Alu -13 299 2 198 128 0 0 chr13 21719387 21719426 -80153743 + (TC)n Simple_repeat Simple_repeat 2 40 0 270 233 14 0 chr13 21720094 21720167 -80153002 + L1ME2 LINE L1 5821 5894 -280 474 261 0 65 chr13 21720256 21720394 -80152775 + L1ME2 LINE L1 5920 6048 -116 1008 172 20 0 chr13 21720407 21720610 -80152559 - L1MA8 LINE L1 -4 6287 6081 3095 170 37 35 chr13 21721722 21722001 -80151168 + L1MA8 LINE L1 5621 5898 -393 1879 186 37 127 chr13 21722001 21722673 -80150496 + LTR9 LTR ERV1 1 612 0 3095 170 37 35 chr13 21722673 21723041 -80150128 + L1MA8 LINE L1 5898 6269 -22 212 279 66 0 chr13 21723371 21723432 -80149737 - L2 LINE L2 0 3313 3249 256 111 95 48 chr13 21724180 21724243 -80148926 - MLT1J LTR MaLR -33 478 413 225 228 277 0 chr13 21724273 21724374 -80148795 - MLT1J LTR MaLR -380 131 3 1036 187 34 1 chr13 21724959 21725176 -80147993 + L1M3 LINE L1 5564 5791 -392 765 149 0 0 chr13 21725404 21725518 -80147651 + AluJo/FLAM SINE Alu 1 114 -198 710 200 40 0 chr13 21725512 21725662 -80147507 + AluSg/x SINE Alu 157 312 0 * 285 301 148 53 chr13 21727269 21727478 -80145691 + MIR SINE MIR 33 261 -1 23 0 0 0 chr13 21727482 21727505 -80145664 + AT_rich Low_complexity Low_complexity 1 23 0 467 342 54 19 chr13 21727934 21728194 -80144975 + L2 LINE L2 1733 2001 -1313 698 217 92 0 chr13 21728238 21728390 -80144779 + MER63A DNA MER1_type 1 166 -44 376 233 89 11 chr13 21728405 21728585 -80144584 + Zaphod DNA AcHobo 648 841 -3190 423 0 0 0 chr13 21728613 21728660 -80144509 + (TA)n Simple_repeat Simple_repeat 2 48 0 1860 159 0 23 chr13 21728660 21728961 -80144208 - AluSx SINE Alu -18 294 1 1571 197 60 26 chr13 21729088 21729179 -80143990 + Zaphod DNA AcHobo 3595 3681 -350 2397 72 0 0 chr13 21729179 21729470 -80143699 + AluSg SINE Alu 1 291 -19 1571 197 60 26 chr13 21729470 21729795 -80143374 + Zaphod DNA AcHobo 3681 4025 -6 408 351 81 11 chr13 21731070 21731355 -80141814 + L2 LINE L2 3005 3309 -4 327 238 12 12 chr13 21732040 21732120 -80141049 + L2 LINE L2 3186 3265 -7 2903 118 7 2 chr13 21733319 21733751 -80139418 + MER57B LTR ERV1 1 434 0 34 42 0 0 chr13 21734774 21734822 -80138347 + AT_rich Low_complexity Low_complexity 1 48 0 2226 276 151 28 chr13 21735456 21736181 -80136988 + HAL1 LINE L1 43 677 -1830 198 0 0 0 chr13 21736181 21736203 -80136966 + (CA)n Simple_repeat Simple_repeat 1 22 0 2226 276 151 28 chr13 21736203 21736924 -80136245 + HAL1 LINE L1 677 1668 -839 358 261 121 20 chr13 21736932 21737131 -80136038 + HAL1 LINE L1 2289 2507 0 475 252 8 8 chr13 21737901 21738020 -80135149 - MIR SINE MIR -24 238 120 2347 92 0 13 chr13 21738032 21738348 -80134821 - AluSx SINE Alu 0 312 1 841 201 98 0 chr13 21739159 21739343 -80133826 - MER3 DNA MER1_type 0 209 8 1791 152 51 0 chr13 21739611 21739887 -80133282 + AluSx SINE Alu 2 291 -21 1453 121 85 40 chr13 21740031 21740350 -80132819 - AluSq SINE Alu 0 331 1 2443 58 0 3 chr13 21740396 21740691 -80132478 + AluY SINE Alu 1 294 -17 182 375 18 0 chr13 21741330 21741386 -80131783 - L2 LINE L2 -90 3182 3126 292 253 115 11 chr13 21741485 21741572 -80131597 - L2 LINE L2 0 3313 3218 2323 96 7 0 chr13 21741851 21742154 -80131015 + AluY SINE Alu 6 310 -1 237 362 70 76 chr13 21742611 21742940 -80130229 - L2 LINE L2 0 3272 2946 23 33 0 0 chr13 21743001 21743031 -80130138 + AT_rich Low_complexity Low_complexity 1 30 0 379 309 33 0 chr13 21743466 21743618 -80129551 - L1ME1 LINE L1 -3 6163 6007 1502 210 10 10 chr13 21743956 21744261 -80128908 + AluJb SINE Alu 1 305 -7 345 24 0 0 chr13 21744395 21744437 -80128732 + (TG)n Simple_repeat Simple_repeat 2 43 0 1259 209 25 76 chr13 21745522 21745939 -80127230 + MLT2C1 LTR ERVL 1 662 -1 23 54 0 0 chr13 21746124 21746161 -80127008 + AT_rich Low_complexity Low_complexity 1 37 0 219 224 0 59 chr13 21746934 21747019 -80126150 + A-rich Low_complexity Low_complexity 4 83 0 29 47 0 0 chr13 21748381 21748424 -80124745 + AT_rich Low_complexity Low_complexity 1 43 0 466 337 10 45 chr13 21748453 21748655 -80124514 - MIR SINE MIR -66 196 2 3500 202 126 5 chr13 21748920 21749899 -80123270 - Charlie1a DNA MER1_type 0 1455 359 1150 234 70 32 chr13 21749918 21750234 -80122935 - Charlie1a DNA MER1_type -1126 329 2 537 125 0 11 chr13 21751528 21751638 -80121531 + AluY SINE Alu 213 311 0 1997 84 23 0 chr13 21752253 21752516 -80120653 + AluSc SINE Alu 26 294 -15 4132 207 34 13 chr13 21753194 21754098 -80119071 + MER49 LTR ERV1 1 923 0 267 366 94 14 chr13 21754829 21755042 -80118127 + L2 LINE L2 2139 2368 -946 201 74 0 0 chr13 21755077 21755104 -80118065 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1556 179 3 34 chr13 21755122 21755413 -80117756 - AluJb SINE Alu -30 282 1 342 194 0 0 chr13 21755508 21755580 -80117589 - MER116 DNA Mariner 0 80 9 29 28 0 0 chr13 21757772 21757808 -80115361 + AT_rich Low_complexity Low_complexity 1 36 0 246 105 0 0 chr13 21758474 21758512 -80114657 + (CA)n Simple_repeat Simple_repeat 1 38 0 441 110 0 0 chr13 21759164 21759237 -80113932 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 0 0 0 chr13 21759624 21759646 -80113523 + AT_rich Low_complexity Low_complexity 1 22 0 265 263 62 0 chr13 21760286 21760366 -80112803 - L2 LINE L2 0 3272 3188 284 309 27 34 chr13 21761145 21761294 -80111875 - L2 LINE L2 -1 3312 3165 315 0 0 0 chr13 21762184 21762219 -80110950 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 198 250 103 15 chr13 21762638 21762706 -80110463 - MIR SINE MIR -63 145 72 216 0 0 0 chr13 21762733 21762757 -80110412 + (A)n Simple_repeat Simple_repeat 1 24 0 2304 96 0 0 chr13 21763496 21763789 -80109380 - AluSc SINE Alu -16 293 1 1785 145 151 3 chr13 21764063 21764380 -80108789 + THE1B LTR MaLR 1 364 0 4762 116 59 0 chr13 21764380 21765138 -80108031 + THE1B-int LTR MaLR 1 803 -777 2664 183 2 48 chr13 21765130 21765390 -80107779 + L1MA7 LINE L1 5523 5794 -497 * 231 36 0 0 chr13 21765390 21765418 -80107751 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 2664 183 2 48 chr13 21765418 21765434 -80107735 + L1MA7 LINE L1 5794 5809 -482 378 0 0 0 chr13 21765434 21765476 -80107693 + (GA)n Simple_repeat Simple_repeat 1 42 0 2664 183 2 48 chr13 21765476 21765800 -80107369 + L1MA7 LINE L1 5809 6096 -195 1101 120 0 0 chr13 21765827 21766004 -80107165 - AluSg/x SINE Alu 0 308 132 701 133 107 0 chr13 21766071 21766221 -80106948 + L1MA9 LINE L1 6141 6306 -6 304 340 109 32 chr13 21766941 21767097 -80106072 + L2 LINE L2 3101 3268 -4 266 315 11 0 chr13 21767100 21767189 -80105980 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 846 225 29 10 chr13 21767593 21767802 -80105367 - LTR16A1 LTR ERVL 0 457 245 337 289 88 0 chr13 21767885 21767999 -80105170 - LTR16A1 LTR ERVL -333 124 1 969 222 19 5 chr13 21768010 21768226 -80104943 - MER20 DNA MER1_type 0 219 1 252 296 0 0 chr13 21769179 21769233 -80103936 - L2 LINE L2 -3 3269 3216 21 36 0 0 chr13 21770076 21770104 -80103065 + AT_rich Low_complexity Low_complexity 1 28 0 2670 179 16 2 chr13 21770977 21771468 -80101701 + ERVL-B1 LTR ERVL 929 1426 -4338 * 4404 174 63 30 chr13 21771460 21772428 -80100741 + ERVL-B1 LTR ERVL 4758 5757 -7 1224 206 7 58 chr13 21772428 21772738 -80100431 + MLT2B1 LTR ERVL 1 294 -226 268 136 0 10 chr13 21772750 21772766 -80100403 + MLT2B3 LTR ERVL 459 474 -80 503 16 16 0 chr13 21772766 21772830 -80100339 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 268 136 0 10 chr13 21772830 21772872 -80100297 + MLT2B3 LTR ERVL 474 554 0 22 35 0 0 chr13 21772940 21772969 -80100200 + AT_rich Low_complexity Low_complexity 1 29 0 264 219 27 27 chr13 21773189 21773262 -80099907 - MIR SINE MIR -120 142 70 1430 81 0 0 chr13 21773375 21773549 -80099620 - AluSq SINE Alu -6 307 134 1922 143 24 8 chr13 21774080 21774424 -80098745 - MER7A DNA MER2_type -1 345 2 276 30 0 0 chr13 21774676 21774709 -80098460 + (TA)n Simple_repeat Simple_repeat 1 33 0 2143 103 0 10 chr13 21774710 21775002 -80098167 - AluSq SINE Alu -24 289 1 357 326 47 17 chr13 21775021 21775193 -80097976 - L1ME LINE L1 -343 5778 5602 195 338 73 0 chr13 21775971 21776039 -80097130 + MIR SINE MIR 3 75 -187 750 337 95 8 chr13 21776042 21776410 -80096759 + L3 LINE CR1 1084 1483 -94 2312 97 0 0 chr13 21777646 21777936 -80095233 + AluSc SINE Alu 1 290 -19 206 261 15 15 chr13 21778059 21778124 -80095045 + MIR SINE MIR 78 142 -120 373 248 91 16 chr13 21778599 21778720 -80094449 + LTR67 LTR ERVL 426 555 -2 204 270 79 0 chr13 21779174 21779237 -80093932 + MIR3 SINE MIR 104 171 -37 26 30 0 0 chr13 21780287 21780320 -80092849 + AT_rich Low_complexity Low_complexity 1 33 0 239 316 26 13 chr13 21780386 21780462 -80092707 - MIR3 SINE MIR -123 85 9 26 30 0 0 chr13 21780597 21780630 -80092539 + AT_rich Low_complexity Low_complexity 1 33 0 316 388 39 11 chr13 21780882 21781060 -80092109 - MIR3 SINE MIR -19 189 7 198 0 0 0 chr13 21781708 21781730 -80091439 + (A)n Simple_repeat Simple_repeat 1 22 0 28 29 0 0 chr13 21782520 21782555 -80090614 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr13 21784763 21784784 -80088385 + (CTG)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr13 21792631 21792663 -80080506 + AT_rich Low_complexity Low_complexity 1 32 0 534 168 131 9 chr13 21793358 21793465 -80079704 + FLAM_C SINE Alu 1 120 -23 2088 128 28 0 chr13 21794143 21794432 -80078737 - AluSx SINE Alu -15 297 1 460 374 52 0 chr13 21795376 21795550 -80077619 + MER91A DNA MER1_type 2 184 -12 282 190 51 63 chr13 21797951 21798030 -80075139 - MIR SINE MIR -108 154 77 693 166 0 22 chr13 21798316 21798455 -80074714 - L1PA13 LINE L1 -1 6162 6027 749 343 115 32 chr13 21801531 21802021 -80071148 - L2 LINE L2 -6 3266 2818 1700 139 72 31 chr13 21802021 21802380 -80070789 - THE1C LTR MaLR 0 375 2 749 343 115 32 chr13 21802380 21802763 -80070406 - L2 LINE L2 -454 2818 2321 596 255 34 68 chr13 21802820 21803055 -80070114 + MIR SINE MIR 10 236 -26 226 194 30 0 chr13 21803126 21803193 -80069976 + CT-rich Low_complexity Low_complexity 4 72 0 260 289 0 0 chr13 21805396 21805472 -80067697 + MIR SINE MIR 184 259 -3 444 227 101 25 chr13 21805474 21805593 -80067576 + L2 LINE L2 3185 3312 -1 2203 116 0 0 chr13 21805706 21806000 -80067169 + AluSx SINE Alu 3 296 -16 2055 131 0 0 chr13 21806088 21806392 -80066777 - AluSq SINE Alu 0 304 1 22 35 0 0 chr13 21806699 21806728 -80066441 + AT_rich Low_complexity Low_complexity 1 29 0 238 242 16 0 chr13 21806746 21806808 -80066361 + (TA)n Simple_repeat Simple_repeat 1 63 0 26 0 0 0 chr13 21806839 21806865 -80066304 + AT_rich Low_complexity Low_complexity 1 26 0 1722 141 36 16 chr13 21807194 21807319 -80065850 + AluSx SINE Alu 1 122 -190 459 0 0 0 chr13 21807319 21807370 -80065799 + (CA)n Simple_repeat Simple_repeat 2 52 0 1722 141 36 16 chr13 21807370 21807550 -80065619 + AluSx SINE Alu 122 312 0 193 301 72 0 chr13 21807953 21808036 -80065133 + L2 LINE L2 3221 3309 -4 1961 84 92 3 chr13 21809242 21809526 -80063643 - AluSg SINE Alu -1 309 1 300 158 0 0 chr13 21809926 21809983 -80063186 + CT-rich Low_complexity Low_complexity 2 58 0 378 74 0 0 chr13 21809983 21810037 -80063132 + (CA)n Simple_repeat Simple_repeat 1 54 0 440 289 30 48 chr13 21810552 21810718 -80062451 + MIR SINE MIR 28 190 -72 777 223 57 33 chr13 21811143 21811354 -80061815 + MER20 DNA MER1_type 1 216 -3 201 297 81 54 chr13 21811428 21811539 -80061630 + L2 LINE L2 3199 3312 -1 955 194 65 27 chr13 21811779 21812122 -80061047 + L1MA8 LINE L1 5982 6290 -1 2028 106 3 27 chr13 21812135 21812453 -80060716 + AluSq SINE Alu 1 311 0 21 36 0 0 chr13 21813217 21813245 -80059924 + AT_rich Low_complexity Low_complexity 1 28 0 1986 140 17 0 chr13 21813840 21814140 -80059029 - AluSx SINE Alu -7 305 1 439 296 62 12 chr13 21814318 21814480 -80058689 + L3 LINE CR1 1318 1487 -90 2200 116 0 0 chr13 21814745 21815039 -80058130 - AluSx SINE Alu -8 304 11 231 333 157 0 chr13 21816143 21816296 -80056873 - MIR SINE MIR -1 261 85 2138 191 21 50 chr13 21816298 21816564 -80056605 - MLT1D LTR MaLR -2 503 258 2190 107 0 0 chr13 21816564 21816853 -80056316 - AluSq SINE Alu -24 289 1 2138 191 21 50 chr13 21816853 21817104 -80056065 - MLT1D LTR MaLR -247 258 1 1242 61 12 0 chr13 21818343 21818507 -80054662 + L1PA10 LINE L1 6001 6166 -2 245 225 102 176 chr13 21819247 21819360 -80053809 + MER5B DNA MER1_type 6 101 -77 1296 133 45 166 chr13 21819360 21819692 -80053477 - AluJo SINE Alu -10 292 1 245 225 102 176 chr13 21819692 21819765 -80053404 + MER5B DNA MER1_type 101 178 0 645 181 194 12 chr13 21819861 21820021 -80053148 - MER5A DNA MER1_type 0 189 1 2114 125 3 13 chr13 21820281 21820593 -80052576 + AluSx SINE Alu 1 309 -3 586 206 121 0 chr13 21820973 21821114 -80052055 + MER105 DNA DNA 5 162 -42 739 241 60 19 chr13 21821125 21821341 -80051828 - MIR SINE MIR -36 226 2 241 353 0 0 chr13 21821671 21821756 -80051413 - MIR SINE MIR -131 131 47 452 364 57 53 chr13 21822511 21822986 -80050183 - L2 LINE L2 0 3313 2837 2564 205 16 23 chr13 21823286 21823848 -80049321 - MER74A LTR ERVL 0 558 1 1308 120 22 0 chr13 21824629 21824841 -80048328 + AluSg/x SINE Alu 95 310 0 373 289 67 0 chr13 21824905 21825009 -80048160 + L2 LINE L2 3200 3310 -3 1556 182 7 27 chr13 21825748 21826045 -80047124 - AluJb SINE Alu -21 291 1 272 170 259 82 chr13 21826111 21826160 -80047009 - MER103 DNA DNA 0 166 127 2008 74 4 0 chr13 21826160 21826428 -80046741 - AluSp SINE Alu 0 308 40 272 170 259 82 chr13 21826428 21826512 -80046657 - MER103 DNA DNA -39 127 8 233 264 66 75 chr13 21828804 21828910 -80044259 + MER94 DNA DNA 4 108 -26 298 282 103 0 chr13 21830759 21830876 -80042293 + MER112 DNA MER1_type 98 226 -34 219 36 0 0 chr13 21830996 21831024 -80042145 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 679 198 0 0 chr13 21831024 21831140 -80042029 - FLAM_C SINE Alu -27 116 1 200 163 0 20 chr13 21831499 21831548 -80041621 + A-rich Low_complexity Low_complexity 2 49 0 1418 171 54 54 chr13 21831815 21832071 -80041098 - Charlie1 DNA MER1_type 0 2761 2503 2289 108 0 3 chr13 21832071 21832378 -80040791 - AluSg SINE Alu -4 306 1 1418 171 54 54 chr13 21832378 21832513 -80040656 - Charlie1 DNA MER1_type -257 2504 2370 195 204 0 0 chr13 21834196 21834245 -80038924 + T-rich Low_complexity Low_complexity 1 49 0 477 339 99 66 chr13 21835068 21835616 -80037553 - L2 LINE L2 -434 2880 2294 2249 110 3 3 chr13 21835616 21835924 -80037245 + AluSx SINE Alu 1 308 -4 477 339 99 66 chr13 21835924 21836204 -80036965 - L2 LINE L2 -1020 2294 2025 607 320 30 17 chr13 21836209 21836443 -80036726 + MIR SINE MIR 17 253 -9 203 156 0 0 chr13 21836493 21836525 -80036644 + (CAT)n Simple_repeat Simple_repeat 2 33 0 225 343 145 14 chr13 21836573 21836780 -80036389 - L2 LINE L2 -1344 1970 1737 445 196 203 8 chr13 21838363 21838496 -80034673 - MIR SINE MIR -54 208 50 455 332 15 19 chr13 21839771 21840030 -80033139 - HAL1 LINE L1 -2203 304 47 222 180 0 0 chr13 21840617 21840678 -80032491 + (TA)n Simple_repeat Simple_repeat 1 61 0 189 274 264 19 chr13 21841115 21841221 -80031948 + L2 LINE L2 3141 3272 0 1251 161 32 0 chr13 21841536 21841753 -80031416 - AluJo SINE Alu -5 307 84 2272 84 0 3 chr13 21841812 21842124 -80031045 - AluSq SINE Alu 0 311 1 27 73 0 0 chr13 21842542 21842597 -80030572 + AT_rich Low_complexity Low_complexity 1 55 0 297 0 0 0 chr13 21844728 21844761 -80028408 + (TG)n Simple_repeat Simple_repeat 2 34 0 243 61 0 0 chr13 21844822 21844855 -80028314 + (CA)n Simple_repeat Simple_repeat 2 34 0 361 306 25 12 chr13 21845900 21846060 -80027109 - MER103 DNA DNA -1 165 4 818 143 15 170 chr13 21846853 21847112 -80026057 - MER20 DNA MER1_type 0 219 1 1147 96 28 11 chr13 21847502 21847679 -80025490 + THE1B LTR MaLR 1 180 -184 2072 148 42 10 chr13 21847683 21848024 -80025145 - L1MA4 LINE L1 -369 5931 5575 1862 131 4 15 chr13 21848024 21848298 -80024871 - AluSx SINE Alu -10 302 32 2072 148 42 10 chr13 21848298 21848342 -80024827 - L1MA4 LINE L1 -725 5575 5534 1579 171 0 4 chr13 21848369 21848649 -80024520 - L1M2 LINE L1 -549 5763 5485 297 0 0 0 chr13 21849197 21849230 -80023939 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 354 0 0 chr13 21849480 21849562 -80023607 + CT-rich Low_complexity Low_complexity 5 86 0 24 53 0 0 chr13 21849731 21849769 -80023400 + AT_rich Low_complexity Low_complexity 1 38 0 29 90 0 0 chr13 21850475 21850553 -80022616 + AT_rich Low_complexity Low_complexity 1 78 0 299 0 73 0 chr13 21851289 21851330 -80021839 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 405 0 0 0 chr13 21852191 21852236 -80020933 + (ATG)n Simple_repeat Simple_repeat 2 46 0 2226 104 0 0 chr13 21852253 21852533 -80020636 - AluSg SINE Alu -30 280 1 2409 188 104 38 chr13 21853523 21853857 -80019312 + MER82 DNA MER2_type 1 312 -341 2178 104 0 41 chr13 21853857 21854173 -80018996 - AluSx SINE Alu -9 303 1 2409 188 104 38 chr13 21854173 21854445 -80018724 + MER82 DNA MER2_type 312 647 -6 2045 128 24 0 chr13 21854924 21855220 -80017949 - AluSx SINE Alu -9 303 1 187 304 20 130 chr13 21855642 21855895 -80017274 + L2 LINE L2 2953 3177 -95 862 215 0 0 chr13 21856219 21856382 -80016787 + FRAM SINE Alu 1 163 -3 28 0 0 0 chr13 21858816 21858844 -80014325 + AT_rich Low_complexity Low_complexity 1 28 0 312 290 56 48 chr13 21859417 21859652 -80013517 - MIR3 SINE MIR -12 250 15 2274 87 17 0 chr13 21859778 21860067 -80013102 - AluSp SINE Alu -19 294 1 358 374 69 24 chr13 21860362 21860694 -80012475 - L1ME LINE L1 -449 5672 5326 22 56 0 0 chr13 21861788 21861824 -80011345 + AT_rich Low_complexity Low_complexity 1 36 0 2487 67 0 0 chr13 21862244 21862542 -80010627 - AluY SINE Alu -13 298 1 264 292 0 15 chr13 21864190 21864255 -80008914 - L2 LINE L2 0 3313 3250 320 246 200 9 chr13 21864351 21864461 -80008708 - MIR SINE MIR -130 132 2 215 336 28 9 chr13 21864480 21864587 -80008582 - MIR SINE MIR -148 114 6 517 254 8 8 chr13 21865335 21865453 -80007716 + L2 LINE L2 3196 3313 0 192 97 0 0 chr13 21865594 21865625 -80007544 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1728 154 29 4 chr13 21865629 21865909 -80007260 - AluJb SINE Alu -25 287 1 204 82 41 20 chr13 21867332 21867381 -80005788 + (TA)n Simple_repeat Simple_repeat 1 50 0 195 194 32 0 chr13 21867469 21867562 -80005607 + (TA)n Simple_repeat Simple_repeat 1 96 0 762 172 0 0 chr13 21867568 21867690 -80005479 - FLAM_C SINE Alu -21 122 1 189 107 0 0 chr13 21868191 21868219 -80004950 + (A)n Simple_repeat Simple_repeat 1 28 0 527 250 85 0 chr13 21918793 21918957 -79954212 + MER58B DNA MER1_type 153 330 -11 2318 103 0 0 chr13 21919009 21919301 -79953868 - AluSx SINE Alu -20 292 1 1701 202 98 7 chr13 21919302 21919753 -79953416 - Charlie1b DNA MER1_type -5 518 27 2189 108 13 22 chr13 21919765 21920080 -79953089 - AluSq SINE Alu -1 312 1 204 228 18 97 chr13 21920974 21921088 -79952081 + CT-rich Low_complexity Low_complexity 1 105 0 296 287 79 30 chr13 21921726 21921827 -79951342 + MIR SINE MIR 2 107 -155 2084 88 3 18 chr13 21922164 21922447 -79950722 + AluSx SINE Alu 2 280 -32 183 42 0 0 chr13 21922447 21922471 -79950698 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 1436 42 6 0 chr13 21922471 21922637 -79950532 + AluSp SINE Alu 135 301 -12 2463 149 112 78 chr13 21923449 21923985 -79949184 - MLT2B3 LTR ERVL 0 554 1 505 275 163 0 chr13 21924255 21924415 -79948754 - MIR SINE MIR -2 260 75 268 257 0 40 chr13 21925371 21925445 -79947724 - L2 LINE L2 0 3313 3243 2367 175 37 2 chr13 21927954 21928411 -79944758 + L1MB8 LINE L1 5697 6169 -9 436 305 106 0 chr13 21929308 21929449 -79943720 + MIR3 SINE MIR 46 201 -7 324 277 69 5 chr13 21931702 21931836 -79941333 + MIR SINE MIR 2 157 -51 312 275 14 113 chr13 21933495 21933637 -79939532 + L2 LINE L2 3186 3313 0 1585 173 45 14 chr13 21934349 21934638 -79938531 + AluJo SINE Alu 1 298 -14 418 346 27 11 chr13 21934953 21935138 -79938031 + MIR SINE MIR 75 262 0 21 36 0 0 chr13 21935177 21935205 -79937964 + AT_rich Low_complexity Low_complexity 1 28 0 551 323 0 12 chr13 21935842 21936009 -79937160 + MIR3 SINE MIR 33 197 -11 279 203 0 0 chr13 21942280 21942339 -79930830 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2255 93 0 7 chr13 21942355 21942644 -79930525 - AluSp SINE Alu -18 295 9 790 184 8 24 chr13 21943794 21943958 -79929211 - MER74A LTR ERVL -179 379 137 2456 194 69 12 chr13 21944166 21944671 -79928498 - MER74A LTR ERVL 0 558 25 284 312 0 0 chr13 21944859 21944936 -79928233 + MER63 DNA MER1_type 985 1061 -1 202 350 0 0 chr13 21944946 21945006 -79928163 - MER91A DNA MER1_type -118 78 19 220 254 68 0 chr13 21945974 21946033 -79927136 - MIR SINE MIR -41 221 159 3333 94 12 2 chr13 21946034 21946515 -79926654 + LTR19A LTR ERV1 1 486 0 2581 252 63 49 chr13 21947311 21948266 -79924903 + L1M4 LINE L1 2 969 -5573 2801 138 15 4 chr13 21949363 21949819 -79923350 - MER4C LTR ERV1 -4 461 1 2521 196 144 43 chr13 21949932 21950682 -79922487 + LTR1B LTR ERV1 1 826 0 378 314 36 23 chr13 21952234 21952454 -79920715 + L2 LINE L2 2051 2273 -1041 3168 127 231 11 chr13 21952458 21953180 -79919989 - Tigger3(Golem) DNA MER2_type -1 3028 2148 1171 196 82 86 chr13 21953209 21953894 -79919275 + LTR1B LTR ERV1 2 745 -81 237 68 23 0 chr13 21953999 21954043 -79919126 - Tigger3(Golem) DNA MER2_type -2706 323 279 1047 155 0 0 chr13 21954043 21954236 -79918933 - L1 LINE L1 -911 5235 5043 1564 143 8 0 chr13 21954236 21954501 -79918668 - Tigger3b DNA MER2_type -826 405 139 310 329 12 59 chr13 21954507 21954677 -79918492 + L2 LINE L2 3150 3311 -2 201 312 32 32 chr13 21954739 21954832 -79918337 - MIR3 SINE MIR -112 96 4 28 0 0 0 chr13 21956645 21956673 -79916496 + AT_rich Low_complexity Low_complexity 1 28 0 1577 199 48 3 chr13 21956866 21957157 -79916012 - AluSx SINE Alu -8 304 1 879 193 113 0 chr13 21957302 21957515 -79915654 + MSTD-int LTR MaLR 1499 1735 0 1254 228 94 32 chr13 21957515 21957888 -79915281 + MSTD LTR MaLR 1 396 0 737 169 16 0 chr13 21959238 21959362 -79913807 + AluJb SINE Alu 1 126 -186 325 242 78 33 chr13 21959562 21959715 -79913454 + L1M4 LINE L1 1457 1616 -5018 2519 47 0 0 chr13 21959772 21960072 -79913097 + AluY SINE Alu 1 300 -11 319 265 110 40 chr13 21960125 21960325 -79912844 + L1M4 LINE L1 1904 2117 -4708 267 152 80 24 chr13 21960328 21960453 -79912716 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 0 0 0 chr13 21960468 21960490 -79912679 + AT_rich Low_complexity Low_complexity 1 22 0 487 128 90 0 chr13 21960774 21960852 -79912317 + AluJb SINE Alu 85 169 -143 2056 174 30 123 chr13 21960852 21961511 -79911658 + LTR9 LTR ERV1 1 598 -14 839 168 0 0 chr13 21961519 21961650 -79911519 + AluJb SINE Alu 166 296 -16 305 260 10 0 chr13 21961662 21961762 -79911407 + L1M4 LINE L1 4390 4490 -2154 1430 226 57 65 chr13 21961856 21962361 -79910808 + MLT1E1 LTR MaLR 154 654 0 411 231 121 40 chr13 21962443 21962790 -79910379 + L1M4 LINE L1 4575 4949 -1695 303 248 165 8 chr13 21962836 21962957 -79910212 + L1M4 LINE L1 5016 5155 -1489 266 216 68 45 chr13 21963396 21963429 -79909740 + L1MC4 LINE L1 6447 6478 -1564 4264 154 61 12 chr13 21963429 21964253 -79908916 + MER6 DNA MER2_type 1 864 -1 266 216 68 45 chr13 21964253 21964307 -79908862 + L1MC4 LINE L1 6478 6536 -1506 3609 137 42 14 chr13 21964307 21964844 -79908325 + Tigger2 DNA MER2_type 2 564 -2154 2085 123 0 3 chr13 21964844 21965158 -79908011 - AluSq SINE Alu 0 313 1 3609 137 42 14 chr13 21965158 21965284 -79907885 + Tigger2 DNA MER2_type 564 685 -2033 270 182 68 45 chr13 21965338 21965426 -79907743 + L1MC4 LINE L1 7016 7105 -937 * 315 123 0 18 chr13 21965410 21965467 -79907702 + L1MC4a LINE L1 7163 7218 -590 274 262 0 48 chr13 21965468 21965571 -79907598 + L1MC4 LINE L1 7387 7484 -558 399 151 0 0 chr13 21965572 21965645 -79907524 + L1PA16 LINE L1 6072 6144 -22 520 233 70 0 chr13 21965656 21965828 -79907341 + L1MC4 LINE L1 7470 7653 -389 272 308 208 23 chr13 21966356 21966577 -79906592 - L2 LINE L2 -182 3090 2829 26 30 0 0 chr13 21967094 21967127 -79906042 + AT_rich Low_complexity Low_complexity 1 33 0 2276 110 0 0 chr13 21968990 21969289 -79903880 - AluSq SINE Alu -14 299 1 2129 114 3 10 chr13 21969815 21970105 -79903064 + AluSp SINE Alu 1 288 -25 195 42 0 0 chr13 21970105 21970129 -79903040 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 608 308 70 12 chr13 21970149 21970477 -79902692 - MER41E LTR ERV1 0 512 166 397 179 84 0 chr13 21971036 21971131 -79902038 + L1MA9 LINE L1 6173 6275 -37 183 219 98 0 chr13 21972717 21972758 -79900411 - L2 LINE L2 -2 3311 3267 319 322 153 6 chr13 21972835 21973018 -79900151 + MIR SINE MIR 47 256 -6 22 35 0 0 chr13 21973203 21973232 -79899937 + AT_rich Low_complexity Low_complexity 1 29 0 272 329 65 26 chr13 21973491 21973722 -79899447 + MIR SINE MIR 23 262 0 190 278 33 56 chr13 21975004 21975094 -79898075 - MIR SINE MIR -128 134 47 363 176 199 37 chr13 22025560 22025696 -79847473 + MER103 DNA DNA 2 159 -7 348 250 70 16 chr13 22025837 22025965 -79847204 - Charlie2a DNA MER1_type -1 2861 2727 516 233 100 0 chr13 22025987 22026137 -79847032 - Charlie2a DNA MER1_type -1224 1638 1474 226 246 0 18 chr13 22026207 22026264 -79846905 - Charlie2b DNA MER1_type -2109 673 618 1095 160 5 30 chr13 22026264 22026464 -79846705 - AluJo SINE Alu -117 195 1 239 138 155 35 chr13 22026469 22026527 -79846642 - Charlie2b DNA MER1_type -2158 624 560 434 259 117 19 chr13 22026584 22026746 -79846423 - Charlie2b DNA MER1_type -2640 222 45 604 170 236 0 chr13 22026805 22026970 -79846199 - MER3 DNA MER1_type 0 209 6 813 238 0 5 chr13 22027516 22027701 -79845468 - MER3 DNA MER1_type -25 184 1 2190 108 7 0 chr13 22028660 22028957 -79844212 - AluSq SINE Alu -14 299 1 186 219 98 0 chr13 22030317 22030358 -79842811 - L2 LINE L2 -2 3311 3267 317 322 153 6 chr13 22030435 22030618 -79842551 + MIR SINE MIR 47 256 -6 22 35 0 0 chr13 22030803 22030832 -79842337 + AT_rich Low_complexity Low_complexity 1 29 0 263 329 65 26 chr13 22031091 22031322 -79841847 + MIR SINE MIR 23 262 0 188 278 33 56 chr13 22032604 22032694 -79840475 - MIR SINE MIR -128 134 47 2358 53 0 41 chr13 22035631 22035950 -79837219 + AluY SINE Alu 1 306 -5 26 30 0 0 chr13 22038062 22038095 -79835074 + AT_rich Low_complexity Low_complexity 1 33 0 1275 211 127 42 chr13 22039004 22039430 -79833739 - MLT1C LTR MaLR 0 467 6 354 23 0 0 chr13 22039963 22040006 -79833163 + (TG)n Simple_repeat Simple_repeat 2 44 0 327 177 16 0 chr13 22041223 22041285 -79831884 - MIR SINE MIR -43 219 157 2303 46 42 7 chr13 22041786 22042071 -79831098 + AluY SINE Alu 2 296 -15 193 240 95 32 chr13 22042547 22042649 -79830520 + MIR SINE MIR 31 145 -63 296 340 35 40 chr13 22044150 22044350 -79828819 - L2 LINE L2 -98 3174 2976 204 158 0 0 chr13 22044567 22044605 -79828564 + T-rich Low_complexity Low_complexity 2 39 0 239 235 226 20 chr13 22045105 22045207 -79827962 + MIR SINE MIR 68 190 -72 441 65 0 0 chr13 22046275 22046337 -79826832 - Alu SINE Alu -7 304 243 1919 60 0 28 chr13 22046345 22046595 -79826574 - AluY SINE Alu -40 271 29 216 106 0 64 chr13 22047801 22047848 -79825321 + (TTTAA)n Simple_repeat Simple_repeat 3 46 0 278 336 161 27 chr13 22048361 22048584 -79824585 + L3 LINE CR1 869 1121 -456 2115 168 34 31 chr13 22048600 22049148 -79824021 + MLT2A2 LTR ERVL 1 554 0 255 252 221 38 chr13 22049196 22049327 -79823842 + L3 LINE CR1 1264 1418 -159 626 293 107 18 chr13 22049341 22049566 -79823603 + MIR SINE MIR 4 248 -14 383 305 103 53 chr13 22050006 22050383 -79822786 + MLT1J LTR MaLR 108 503 -8 246 161 43 65 chr13 22050648 22050741 -79822428 + (TTTAA)n Simple_repeat Simple_repeat 4 94 0 237 264 85 54 chr13 22050833 22050962 -79822207 - L1M4 LINE L1 -1999 4147 4015 3195 156 23 3 chr13 22051654 22052220 -79820949 - L1PA16 LINE L1 -8 7596 7020 1264 136 0 0 chr13 22052222 22052413 -79820756 + AluSc SINE Alu 115 305 -4 8305 196 23 10 chr13 22052414 22054598 -79818571 - L1PA16 LINE L1 -580 7024 4818 385 168 0 32 chr13 22054600 22054695 -79818474 + CT-rich Low_complexity Low_complexity 1 92 0 1180 193 9 9 chr13 22054731 22054944 -79818225 - AluSg/x SINE Alu -14 298 86 3007 232 35 148 chr13 22054944 22055790 -79817379 - L1PA16 LINE L1 -2754 4830 3889 331 21 0 0 chr13 22055790 22055838 -79817331 - AluSp/q SINE Alu 0 303 256 1111 112 7 0 chr13 22055838 22055990 -79817179 - AluSp SINE Alu -160 153 1 3007 232 35 148 chr13 22055990 22057080 -79816089 - L1PA16 LINE L1 -3693 3891 2938 1288 209 13 167 chr13 22057119 22057620 -79815549 - L1PA16 LINE L1 -4893 2681 2256 26 50 0 0 chr13 22057629 22057669 -79815500 + AT_rich Low_complexity Low_complexity 1 40 0 398 293 12 24 chr13 22058450 22058614 -79814555 - L1PA16 LINE L1 -5268 2306 2145 1249 312 58 28 chr13 22058642 22059209 -79813960 - L1PA16 LINE L1 -6203 1371 788 325 107 96 20 chr13 22059518 22059767 -79813402 + (TTATA)n Simple_repeat Simple_repeat 1 267 0 408 128 35 50 chr13 22059900 22060158 -79813011 + (TTATA)n Simple_repeat Simple_repeat 1 254 0 1765 167 19 19 chr13 22060588 22060900 -79812269 - AluJb SINE Alu 0 312 1 216 80 20 40 chr13 22061001 22061051 -79812118 + (CA)n Simple_repeat Simple_repeat 1 49 0 378 268 41 8 chr13 22061070 22061193 -79811976 + MIR SINE MIR 92 218 -44 451 306 113 21 chr13 22062259 22062569 -79810600 + L2 LINE L2 2664 2944 -369 840 264 4 51 chr13 22062569 22062666 -79810503 + MER58A DNA MER1_type 1 101 -2319 1967 164 3 16 chr13 22062666 22062976 -79810193 - AluJb SINE Alu -6 306 1 840 264 4 51 chr13 22062976 22063113 -79810056 + MER58A DNA MER1_type 101 224 0 451 306 113 21 chr13 22063113 22063234 -79809935 + L2 LINE L2 2944 3313 0 190 116 47 0 chr13 22063454 22063497 -79809672 + (TTATA)n Simple_repeat Simple_repeat 2 46 0 1364 182 0 0 chr13 22063622 22063847 -79809322 + AluSg/x SINE Alu 83 307 -3 1909 141 6 31 chr13 22065108 22065428 -79807741 - AluSx SINE Alu 0 312 1 2310 78 10 13 chr13 22065787 22066093 -79807076 - AluSx SINE Alu -7 305 1 236 310 54 39 chr13 22066118 22066247 -79806922 + L2 LINE L2 2190 2320 -994 2426 86 0 0 chr13 22066583 22066884 -79806285 + AluSc SINE Alu 1 301 -8 276 313 74 79 chr13 22067004 22067436 -79805733 - L1ME LINE L1 -424 5746 5317 11399 139 44 11 chr13 22067488 22069513 -79803656 - Tigger4(Zombi) DNA MER2_type 0 2731 640 1778 171 0 52 chr13 22069729 22070057 -79803112 + AluJb SINE Alu 1 311 -1 248 266 25 0 chr13 22070186 22070265 -79802904 - L1ME LINE L1 -1956 4190 4110 40870 30 21 6 chr13 22070371 22076429 -79796740 - L1PA2 LINE L1 -3 6152 3 407 285 80 45 chr13 22076486 22076798 -79796371 - L1ME LINE L1 -2203 3943 3621 3528 154 116 13 chr13 22076980 22077763 -79795406 + MER6 DNA MER2_type 2 865 0 2429 111 53 2 chr13 22077988 22078384 -79794785 + MER57B LTR ERV1 10 425 -9 211 322 33 25 chr13 22078776 22078897 -79794272 + L2 LINE L2 2736 2857 -457 207 349 96 12 chr13 22084607 22084690 -79788479 + L2 LINE L2 3144 3233 -39 562 313 71 5 chr13 22085791 22086002 -79787167 - MIR SINE MIR -31 231 7 324 378 0 9 chr13 22086210 22086321 -79786848 - MIR3 SINE MIR -96 112 3 396 0 0 0 chr13 22088024 22088068 -79785101 + (CA)n Simple_repeat Simple_repeat 2 45 0 410 312 95 30 chr13 22088253 22088484 -79784685 + HAL1b LINE L1 106 351 -997 211 247 72 82 chr13 22089052 22089149 -79784020 + MER5B DNA MER1_type 64 159 -19 229 291 13 0 chr13 22089395 22089474 -79783695 - HsTC2 DNA Tc2 -1811 87 8 766 294 44 11 chr13 22091601 22091876 -79781293 + L2 LINE L2 1025 1308 -2006 1167 151 5 10 chr13 22092340 22092539 -79780630 + MER2 DNA MER2_type 13 210 -135 204 152 196 0 chr13 22092577 22092623 -79780546 + L2 LINE L2 1382 1436 -1878 1691 245 106 4 chr13 22092851 22093333 -79779836 + MLT1F LTR MaLR 1 531 -11 343 231 162 0 chr13 22093363 22093480 -79779689 + MER103 DNA DNA 12 147 -19 194 268 169 0 chr13 22094271 22094342 -79778827 - L2 LINE L2 -63 3250 3168 331 250 58 48 chr13 22094432 22094536 -79778633 + L2 LINE L2 3208 3312 -1 214 267 48 0 chr13 22094554 22094659 -79778510 + (TA)n Simple_repeat Simple_repeat 2 111 0 548 227 105 6 chr13 22094749 22094921 -79778248 - L1ME LINE L1 -390 5731 5543 21 57 0 0 chr13 22095983 22096018 -79777151 + AT_rich Low_complexity Low_complexity 1 35 0 284 321 67 15 chr13 22096344 22096478 -79776691 - MIR SINE MIR -31 231 91 213 39 0 0 chr13 22096767 22096793 -79776376 + (A)n Simple_repeat Simple_repeat 1 26 0 659 191 76 0 chr13 22097120 22097277 -79775892 + MER3 DNA MER1_type 37 205 -4 4706 178 45 24 chr13 22097996 22099132 -79774037 - L1MB2 LINE L1 -1 6170 5059 1651 162 0 54 chr13 22099132 22099466 -79773703 - AluJb SINE Alu 0 318 1 4706 178 45 24 chr13 22099466 22099731 -79773438 - L1MB2 LINE L1 -1112 5059 4801 2093 138 3 13 chr13 22099731 22100043 -79773126 - AluSx SINE Alu -3 309 1 4706 178 45 24 chr13 22100043 22100524 -79772645 - L1MB2 LINE L1 -1370 4801 4237 372 22 0 0 chr13 22100524 22100569 -79772600 + (TG)n Simple_repeat Simple_repeat 2 46 0 4706 178 45 24 chr13 22100569 22100705 -79772464 - L1MB2 LINE L1 -1934 4237 4105 184 360 40 0 chr13 22101011 22101086 -79772083 - MIR3 SINE MIR -129 79 2 1879 141 59 3 chr13 22101135 22101425 -79771744 + AluSx SINE Alu 1 306 -6 392 338 48 0 chr13 22101865 22102010 -79771159 + L1ME LINE L1 5487 5638 -483 676 263 125 22 chr13 22102046 22102278 -79770891 - MIR SINE MIR 0 262 7 645 263 117 24 chr13 22102582 22102795 -79770374 - MIR SINE MIR 0 262 30 1867 142 43 43 chr13 22103014 22103388 -79769781 + THE1C LTR MaLR 1 374 -1 37 81 0 0 chr13 22103459 22103545 -79769624 + AT_rich Low_complexity Low_complexity 1 86 0 1046 310 60 8 chr13 22103613 22103978 -79769191 + L2 LINE L2 1993 2376 -938 915 98 21 0 chr13 22104156 22104299 -79768870 - MER2 DNA MER2_type -135 210 65 609 191 52 0 chr13 22104302 22104417 -79768752 - MER2 DNA MER2_type -224 121 1 638 257 130 36 chr13 22104420 22104696 -79768473 + L2 LINE L2 3005 3306 -7 246 220 17 0 chr13 22105464 22105523 -79767646 + MLT1D LTR MaLR 284 343 -162 712 233 57 25 chr13 22105529 22105808 -79767361 + L1MEc LINE L1 1542 1829 -4567 915 310 64 12 chr13 22105829 22106251 -79766918 + L1M2 LINE L1 3 446 -6403 1335 199 3 43 chr13 22106985 22107287 -79765882 + L1PA16 LINE L1 444 733 -6116 12116 227 30 12 chr13 22107759 22113027 -79760142 + L1PA16 LINE L1 1427 6860 -9 2373 253 48 19 chr13 22113066 22114322 -79758847 + L1MEc LINE L1 1864 3124 -3091 833 101 51 70 chr13 22114325 22114377 -79758792 + MER41A LTR ERV1 400 451 -103 2234 80 0 0 chr13 22114377 22114652 -79758517 + AluSc SINE Alu 35 309 0 833 101 51 70 chr13 22114652 22114757 -79758412 + MER41A LTR ERV1 451 554 0 5386 118 27 30 chr13 22114757 22115388 -79757781 + MER41A-int LTR ERV1 1 632 -5314 2304 92 16 0 chr13 22115388 22115693 -79757476 - AluSg SINE Alu 0 310 1 5386 118 27 30 chr13 22115693 22116646 -79756523 + MER41A-int LTR ERV1 632 1668 -4278 4661 112 35 18 chr13 22116689 22117600 -79755569 + MER41A-int LTR ERV1 1944 2946 -3000 * 12181 103 28 18 chr13 22117582 22119879 -79753290 + MER41B-int LTR ERV1 4092 5941 -5 3435 119 9 11 chr13 22119890 22120438 -79752731 + MER41B LTR ERV1 1 547 -88 356 238 139 5 chr13 22120446 22120669 -79752500 + L1MEc LINE L1 3116 3368 -2847 256 176 0 0 chr13 22120684 22120735 -79752434 - L1ME2 LINE L1 -64 6100 6050 25 31 0 0 chr13 22120854 22120886 -79752283 + AT_rich Low_complexity Low_complexity 1 32 0 779 175 58 0 chr13 22120923 22121077 -79752092 - MER58B DNA MER1_type -12 329 167 803 226 53 43 chr13 22121079 22121402 -79751767 + L1ME2 LINE L1 5829 6154 -10 285 183 42 42 chr13 22123366 22123437 -79749732 - MIR SINE MIR -128 134 64 196 244 22 0 chr13 22123437 22123482 -79749687 - MIR SINE MIR -155 107 62 952 240 69 38 chr13 22123763 22124155 -79749014 - MER96B DNA MER1_type? -1 416 13 273 250 229 14 chr13 22124278 22124418 -79748751 - MIR SINE MIR -65 197 28 26 0 0 0 chr13 22124935 22124961 -79748208 + AT_rich Low_complexity Low_complexity 1 26 0 247 309 21 31 chr13 22125441 22125538 -79747631 + L2 LINE L2 3208 3303 -10 2113 127 0 7 chr13 22126138 22126437 -79746732 - AluSg SINE Alu -13 297 1 250 184 0 41 chr13 22126703 22126752 -79746417 + MER5B DNA MER1_type 8 54 -124 401 347 84 22 chr13 22127062 22127382 -79745787 - L2 LINE L2 -743 2571 2232 236 64 21 43 chr13 22127391 22127438 -79745731 + LTR14B LTR ERVK 1 46 -562 * 1916 122 98 16 chr13 22127426 22127794 -79745375 + LTR14B LTR ERVK 211 608 0 266 335 111 47 chr13 22127831 22128383 -79744786 - L2 LINE L2 -1120 2194 1608 434 271 125 49 chr13 22129921 22130884 -79742285 - L1M4 LINE L1 -2845 3301 2266 186 43 0 0 chr13 22130906 22130929 -79742240 + (TC)n Simple_repeat Simple_repeat 2 24 0 2569 78 24 16 chr13 22130945 22131317 -79741852 - THE1C LTR MaLR 0 375 1 540 281 22 0 chr13 22131885 22132020 -79741149 + MIR3 SINE MIR 70 207 -1 1481 197 3 36 chr13 22132240 22132545 -79740624 - AluJo SINE Alu -13 299 5 1678 235 28 40 chr13 22133218 22133789 -79739380 - L1MC4a LINE L1 -88 7720 7157 273 297 14 22 chr13 22133891 22134029 -79739140 - L1MEd LINE L1 -5914 205 69 246 32 0 0 chr13 22134404 22134435 -79738734 + (ATG)n Simple_repeat Simple_repeat 2 32 0 231 36 0 0 chr13 22134859 22134887 -79738282 + (TG)n Simple_repeat Simple_repeat 1 28 0 1048 117 160 34 chr13 22136251 22136457 -79736712 - LTR18B LTR ERVL 0 614 383 1209 122 15 10 chr13 22136500 22136697 -79736472 - LTR18B LTR ERVL -416 198 1 322 267 89 0 chr13 22138804 22138905 -79734264 - MIR SINE MIR -53 209 100 300 338 91 48 chr13 22139002 22139399 -79733770 - L2 LINE L2 -3 3269 2856 2371 104 0 0 chr13 22139551 22139858 -79733311 - AluSx SINE Alu -5 307 1 389 305 169 0 chr13 22140189 22140402 -79732767 - L1MC/D LINE L1 -2054 5754 5506 371 258 75 19 chr13 22140947 22141160 -79732009 - L1MC4a LINE L1 -1906 5902 5678 207 250 191 15 chr13 22142134 22142202 -79730967 - L2 LINE L2 -2 3270 3191 388 156 0 0 chr13 22142205 22142269 -79730900 + LTR8A LTR ERV1 664 727 0 202 241 52 0 chr13 22142499 22142557 -79730612 - MIR3 SINE MIR -25 183 123 1355 264 27 11 chr13 22143082 22143556 -79729613 + L1ME3 LINE L1 5402 5883 -279 543 119 0 0 chr13 22143569 22143653 -79729516 + MER67D LTR ERV1 26 109 -405 22 109 0 0 chr13 22143653 22143745 -79729424 + AT_rich Low_complexity Low_complexity 1 92 0 1028 186 70 0 chr13 22143772 22143987 -79729182 + MER67C LTR ERV1 114 343 -367 1519 156 38 38 chr13 22144007 22144354 -79728815 + MER4A LTR ERV1 1 347 -317 286 167 17 17 chr13 22144474 22144534 -79728635 + MER4C LTR ERV1 296 355 -110 237 136 23 0 chr13 22144531 22144575 -79728594 + MER4A LTR ERV1 603 647 -17 * 582 249 66 6 chr13 22144625 22144806 -79728363 + MER67D LTR ERV1 319 510 -4 2138 154 30 0 chr13 22145828 22146166 -79727003 + MER7A DNA MER2_type 1 346 0 2083 122 3 29 chr13 22146542 22146854 -79726315 + AluSx SINE Alu 1 304 -8 323 370 24 8 chr13 22146988 22147115 -79726054 + L1ME4a LINE L1 5678 5806 -2002 269 207 11 23 chr13 22147204 22147291 -79725878 + L1ME4a LINE L1 5929 6014 -107 336 83 0 0 chr13 22147291 22147339 -79725830 + (T)n Simple_repeat Simple_repeat 1 48 0 1803 130 67 23 chr13 22147437 22147736 -79725433 - AluSx SINE Alu 0 312 1 448 250 45 51 chr13 22148173 22148349 -79724820 + MER5A DNA MER1_type 9 183 -6 277 224 86 43 chr13 22148460 22148576 -79724593 + MER63 DNA MER1_type 2 748 -88 341 197 0 0 chr13 22148702 22148763 -79724406 + L1MC/D LINE L1 5503 5563 -2245 1065 158 5 48 chr13 22148763 22148972 -79724197 - MLT2D LTR ERVL 0 414 215 781 259 54 11 chr13 22150350 22150648 -79722521 + MLT1I LTR MaLR 63 402 -7 325 296 8 16 chr13 22150967 22151092 -79722077 - MLT1H LTR MaLR -387 162 39 249 218 77 96 chr13 22151190 22151232 -79721937 + L2 LINE L2 22 63 -3251 562 231 16 55 chr13 22151232 22151414 -79721755 - MER69A DNA AcHobo -2 175 1 249 218 77 96 chr13 22151414 22151527 -79721642 + L2 LINE L2 63 174 -3140 883 291 50 18 chr13 22151548 22151830 -79721339 + L2 LINE L2 3019 3309 -4 307 213 33 0 chr13 22151929 22151990 -79721179 - MIR3 SINE MIR -22 186 124 228 216 0 14 chr13 22151991 22152065 -79721104 - Charlie2 DNA MER1_type -116 2746 2674 23231 159 29 23 chr13 22152068 22152209 -79720960 - L1PA10 LINE L1 -4 6479 6340 189 0 0 0 chr13 22152209 22152230 -79720939 + (TCCCC)n Simple_repeat Simple_repeat 1 21 0 23231 159 29 23 chr13 22152230 22157243 -79715926 - L1PA10 LINE L1 -143 6340 1277 180 77 0 0 chr13 22157243 22157269 -79715900 + (TTG)n Simple_repeat Simple_repeat 2 27 0 23231 159 29 23 chr13 22157269 22158539 -79714630 - L1PA10 LINE L1 -5206 1277 17 2155 97 0 42 chr13 22158549 22158858 -79714311 - AluSq SINE Alu -17 296 1 577 236 145 9 chr13 22158858 22159202 -79713967 - Charlie2 DNA MER1_type -171 2691 2301 1072 195 9 26 chr13 22159206 22159437 -79713732 + MER46A DNA MER2_type 1 227 -9 1025 207 40 92 chr13 22159461 22159887 -79713282 - Charlie2 DNA MER1_type -574 2288 1885 590 215 42 14 chr13 22160012 22160156 -79713013 + MER45A DNA AcHobo 31 178 0 * 623 254 85 27 chr13 22160156 22160378 -79712791 - Charlie2 DNA MER1_type -2626 236 2 2658 79 27 3 chr13 22160642 22161008 -79712161 + L1PA11 LINE L1 5798 6172 -2 195 296 0 19 chr13 22161671 22161725 -79711444 + MIR SINE MIR 23 75 -133 449 152 0 11 chr13 22161964 22162056 -79711113 - L1MDa LINE L1 -4115 2425 2335 181 325 0 0 chr13 22164334 22164374 -79708795 + L2 LINE L2 3210 3249 -23 222 333 80 0 chr13 22166366 22166441 -79706728 - L2 LINE L2 -20 3252 3172 300 264 137 61 chr13 22167138 22167335 -79705834 - HAL1 LINE L1 -2295 212 1 399 41 0 0 chr13 22167872 22167921 -79705248 + (CA)n Simple_repeat Simple_repeat 1 49 0 2043 216 50 17 chr13 22168359 22168877 -79704292 - MLT1F1 LTR MaLR -32 535 1 333 390 26 16 chr13 22168909 22169099 -79704070 + L2 LINE L2 2843 3034 -238 183 316 0 18 chr13 22169242 22169299 -79703870 + L2 LINE L2 3193 3248 -24 188 313 157 20 chr13 22169447 22169696 -79703473 - L2 LINE L2 -814 2500 2218 1961 140 20 7 chr13 22171524 22171817 -79701352 - AluSx SINE Alu -15 297 1 945 182 28 0 chr13 22171883 22172064 -79701105 + MLT1B LTR MaLR 1 186 -204 630 205 8 126 chr13 22172060 22172299 -79700870 - LTR24B LTR ERV1 -178 398 188 * 281 148 168 30 chr13 22172394 22172495 -79700674 - LTR23-int LTR ERV1 0 5123 5009 253 319 12 25 chr13 22172866 22172888 -79700281 - MER70-int LTR ERVL -328 4695 4674 338 296 8 15 chr13 22172888 22173020 -79700149 - MER110-int LTR ERV1 -467 6209 6079 2367 78 0 37 chr13 22173498 22173819 -79699350 + AluY SINE Alu 1 309 -2 382 294 74 40 chr13 22174787 22175113 -79698056 - MER110-int LTR ERV1 -2169 2478 2142 539 217 53 59 chr13 22176412 22176734 -79696435 + L1PA16 LINE L1 5812 6131 -35 1245 179 45 38 chr13 22176734 22177024 -79696145 - THE1B LTR MaLR -72 292 1 244 251 239 25 chr13 22177024 22177187 -79695982 + L1ME3A LINE L1 5913 6110 -60 186 319 134 64 chr13 22177680 22177837 -79695332 + MIR SINE MIR 1 168 -94 308 214 9 0 chr13 22177851 22177963 -79695206 + (TA)n Simple_repeat Simple_repeat 1 113 0 1242 221 52 11 chr13 22177982 22178253 -79694916 - AluJo SINE Alu -30 282 1 264 167 0 0 chr13 22178255 22178303 -79694866 + T-rich Low_complexity Low_complexity 1 48 0 6061 126 13 49 chr13 22178320 22179470 -79693699 + L1P LINE L1 3529 4637 -1509 1006 254 48 48 chr13 22179797 22180132 -79693037 + LTR16A LTR ERVL 105 439 -11 1913 117 88 0 chr13 22180401 22180675 -79692494 + AluSc SINE Alu 1 298 -11 1050 182 0 6 chr13 22181588 22181758 -79691411 - AluJb SINE Alu -19 293 125 33 0 0 0 chr13 22181758 22181791 -79691378 + AT_rich Low_complexity Low_complexity 1 33 0 305 309 71 24 chr13 22182424 22182550 -79690619 + MIR3 SINE MIR 66 197 -11 414 0 0 0 chr13 22182577 22182623 -79690546 + (TTA)n Simple_repeat Simple_repeat 3 48 0 39381 35 23 8 chr13 22182623 22188487 -79684682 - L1PA7 LINE L1 -18 6136 187 407 326 181 5 chr13 22189851 22190072 -79683097 + MIR SINE MIR 3 262 0 256 200 36 0 chr13 22191161 22191216 -79681953 + GA-rich Low_complexity Low_complexity 2 58 0 936 136 0 22 chr13 22191216 22191400 -79681769 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2238 124 7 0 chr13 22191956 22192263 -79680906 + AluSp SINE Alu 1 309 -4 269 296 148 9 chr13 22192632 22192747 -79680422 + MIR3 SINE MIR 27 157 -51 3779 125 15 61 chr13 22192969 22193904 -79679265 - L1MA5 LINE L1 -4 6296 5211 1404 76 10 0 chr13 22193908 22194105 -79679064 + L1MA1 LINE L1 6097 6295 -7 312 237 179 47 chr13 22194115 22194305 -79678864 - L1M4 LINE L1 -1623 4523 4309 439 161 35 0 chr13 22194307 22194394 -79678775 - L1M2a LINE L1 -7075 93 4 325 244 26 0 chr13 22194485 22194563 -79678606 - L3 LINE CR1 -149 1428 1349 325 297 33 6 chr13 22194641 22194823 -79678346 + L1ME LINE L1 5325 5511 -653 2042 254 29 28 chr13 22194968 22195683 -79677486 + L1ME3 LINE L1 5445 6160 -2 1096 306 30 21 chr13 22195920 22196348 -79676821 - LTR16A LTR ERVL -3 447 16 1054 339 63 18 chr13 22196818 22197531 -79675638 - ERVL LTR ERVL -951 4813 4069 2156 113 10 7 chr13 22198108 22198410 -79674759 - AluSq SINE Alu -10 303 1 421 233 11 0 chr13 22199476 22199566 -79673603 + L2 LINE L2 3182 3272 0 182 345 46 23 chr13 22199589 22199676 -79673493 + L2 LINE L2 2994 3082 -190 357 75 0 0 chr13 22199743 22199796 -79673373 + (TC)n Simple_repeat Simple_repeat 2 54 0 218 338 144 30 chr13 22200937 22201271 -79671898 + L2 LINE L2 2368 2739 -575 254 146 0 135 chr13 22202277 22202366 -79670803 + AluSq/x SINE Alu 59 135 -167 2105 130 0 20 chr13 22202997 22203352 -79669817 - L1MA8 LINE L1 -430 5861 5514 324 0 0 0 chr13 22203456 22203492 -79669677 + (CA)n Simple_repeat Simple_repeat 2 37 0 273 387 21 14 chr13 22203498 22203640 -79669529 - MIR SINE MIR -73 189 47 22 0 0 0 chr13 22203925 22203947 -79669222 + AT_rich Low_complexity Low_complexity 1 22 0 1930 186 32 67 chr13 22204221 22204390 -79668779 - MLT1D LTR MaLR 0 505 332 2029 161 148 30 chr13 22204390 22204855 -79668314 - MLT2B1 LTR ERVL 0 520 1 1930 186 32 67 chr13 22204855 22205208 -79667961 - MLT1D LTR MaLR -173 332 1 306 314 157 10 chr13 22205278 22205482 -79667687 + MIR SINE MIR 3 236 -26 417 324 78 64 chr13 22206869 22207165 -79666004 + L1ME LINE L1 5316 5615 -506 2314 113 0 3 chr13 22207482 22207783 -79665386 + AluSq SINE Alu 1 300 -13 4859 55 8 0 chr13 22208401 22209037 -79664132 - L1PA7 LINE L1 -94 6060 5420 4733 115 8 0 chr13 22209033 22209780 -79663389 + L1P LINE L1 2454 3206 -2940 * 472 250 83 22 chr13 22209790 22210018 -79663151 - L1MC4a LINE L1 -1885 5923 5682 3840 100 42 8 chr13 22210519 22211159 -79662010 + L1P LINE L1 3079 3740 -2406 21 0 0 0 chr13 22211515 22211536 -79661633 + AT_rich Low_complexity Low_complexity 1 21 0 213 333 0 0 chr13 22211970 22212060 -79661109 + GA-rich Low_complexity Low_complexity 1 90 0 1070 200 37 62 chr13 22212785 22213140 -79660029 - LTR24-int LTR ERV1 -4473 650 305 490 272 21 21 chr13 22213265 22213456 -79659713 - LTR24 LTR ERV1 0 467 277 755 262 63 30 chr13 22213581 22213818 -79659351 - MIR SINE MIR -1 261 17 201 277 0 0 chr13 22214082 22214129 -79659040 + MIR SINE MIR 102 148 -114 2014 158 12 92 chr13 22214132 22214643 -79658526 + L1PB4 LINE L1 5684 6153 -3 193 158 0 26 chr13 22214644 22214682 -79658487 + MIR3 SINE MIR 137 173 -35 186 243 27 0 chr13 22215338 22215375 -79657794 - L2 LINE L2 -17 3255 3218 378 221 115 0 chr13 22215393 22215506 -79657663 - MIR SINE MIR 0 262 137 241 286 13 39 chr13 22215931 22216008 -79657161 - MER5A DNA MER1_type 0 189 115 * 258 200 29 57 chr13 22215954 22216024 -79657145 + MER5A DNA MER1_type 35 102 -87 2228 84 0 0 chr13 22216792 22217066 -79656103 - AluSc SINE Alu -15 294 21 195 254 55 0 chr13 22217149 22217204 -79655965 - L2 LINE L2 -42 3230 3173 2374 75 0 3 chr13 22217495 22217788 -79655381 - AluSq SINE Alu -9 304 13 185 333 0 0 chr13 22217791 22217842 -79655327 - MIR SINE MIR -136 126 76 523 218 132 29 chr13 22218830 22219004 -79654165 + ERVL LTR ERVL 2781 2972 -2792 793 240 204 34 chr13 22219023 22219406 -79653763 + MLT1D LTR MaLR 55 502 -3 302 183 169 0 chr13 22219438 22219509 -79653660 + LTR67 LTR ERVL 97 179 -378 335 219 68 68 chr13 22219639 22219785 -79653384 + LTR67 LTR ERVL 412 557 0 354 212 96 106 chr13 22221183 22221381 -79651788 + MLT1E2 LTR MaLR 1 196 -430 * 899 212 31 62 chr13 22221282 22221574 -79651595 + MLT2C1 LTR ERVL 115 397 0 3193 77 37 2 chr13 22221904 22222292 -79650877 + MLT2A1 LTR ERVL 1 407 -37 225 0 0 0 chr13 22222292 22222317 -79650852 + (TA)n Simple_repeat Simple_repeat 2 26 0 3193 77 37 2 chr13 22222317 22222357 -79650812 + MLT2A1 LTR ERVL 407 444 0 305 75 0 0 chr13 22224062 22224102 -79649067 - MLT2D LTR ERVL 0 464 425 333 0 0 0 chr13 22224102 22224139 -79649030 + (TG)n Simple_repeat Simple_repeat 1 37 0 1624 205 27 19 chr13 22224611 22224977 -79648192 - MLT2D LTR ERVL -40 374 6 199 339 18 37 chr13 22225109 22225218 -79647951 + MIR3 SINE MIR 55 161 -47 2229 135 13 70 chr13 22225353 22225555 -79647614 + Tigger2 DNA MER2_type 6 218 -2500 1466 165 5 0 chr13 22225555 22225779 -79647390 + AluJb SINE Alu 1 225 -87 2229 135 13 70 chr13 22225779 22226044 -79647125 + Tigger2 DNA MER2_type 218 446 -2272 703 210 64 13 chr13 22226047 22226204 -79646965 + AluJb SINE Alu 147 311 -1 1131 129 95 0 chr13 22226205 22226415 -79646754 + Tigger2 DNA MER2_type 530 759 -1959 439 184 39 0 chr13 22226468 22226571 -79646598 + Tigger2 DNA MER2_type 2461 2567 -151 561 28 28 0 chr13 22226571 22226643 -79646526 - AluY SINE Alu -14 296 223 777 172 40 0 chr13 22226643 22226794 -79646375 + Tigger2 DNA MER2_type 2552 2708 -10 23 33 0 0 chr13 22227186 22227216 -79645953 + AT_rich Low_complexity Low_complexity 1 30 0 303 219 14 14 chr13 22227224 22227297 -79645872 - HAL1b LINE L1 -105 1243 1171 477 263 73 167 chr13 22227302 22227547 -79645622 - L2 LINE L2 -20 3293 3027 1763 53 0 18 chr13 22227547 22227774 -79645395 - L1PA8 LINE L1 0 6172 5950 419 70 0 0 chr13 22227774 22227831 -79645338 + L1P3 LINE L1 5681 5737 -435 477 263 73 167 chr13 22227831 22227966 -79645203 - L2 LINE L2 -284 3029 2897 535 295 26 11 chr13 22229065 22229255 -79643914 - HERV16 LTR ERVL -4330 666 474 425 244 79 40 chr13 22229408 22229783 -79643386 + MLT1G1 LTR MaLR 78 589 -6 301 315 31 12 chr13 22229804 22229966 -79643203 - HERV16 LTR ERVL -4680 316 152 375 318 124 32 chr13 22230718 22231096 -79642073 - LTR16A LTR ERVL -29 428 16 225 288 0 0 chr13 22232505 22232564 -79640605 - L2 LINE L2 -547 2767 2709 3957 142 47 20 chr13 22232760 22233513 -79639656 - L1MA5 LINE L1 -5 6295 5523 329 256 16 48 chr13 22234330 22234455 -79638714 - LTR16C LTR ERVL -2 489 369 619 272 138 34 chr13 22234458 22234778 -79638391 - LTR16C LTR ERVL -52 439 87 2012 109 10 10 chr13 22234924 22235245 -79637924 - AluSq SINE Alu 0 313 1 1261 242 97 21 chr13 22236626 22237064 -79636105 - MLT1C LTR MaLR 0 467 1 250 75 0 57 chr13 22237270 22237323 -79635846 - L1MC5 LINE L1 -44 7917 7868 1063 226 72 104 chr13 22237411 22237954 -79635215 - L1MC5 LINE L1 -283 7678 7176 2248 114 0 0 chr13 22237954 22238260 -79634909 - AluY SINE Alu -1 310 5 1063 226 72 104 chr13 22238260 22238655 -79634514 - L1MC5 LINE L1 -785 7176 6770 234 241 92 82 chr13 22238771 22239086 -79634083 + L1M4 LINE L1 4500 4817 -1329 350 229 7 64 chr13 22239602 22239742 -79633427 + L1ME1 LINE L1 5977 6108 -58 * 410 192 96 90 chr13 22239647 22239803 -79633366 + L1MA10 LINE L1 6175 6331 -3 331 309 64 0 chr13 22239915 22240025 -79633144 + MIR SINE MIR 76 192 -70 569 184 0 0 chr13 22240805 22240908 -79632261 - MER58 DNA MER1_type 0 2420 2318 287 243 19 93 chr13 22240920 22241027 -79632142 - MER58 DNA MER1_type -2321 99 1 225 0 0 0 chr13 22241677 22241702 -79631467 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 616 301 52 32 chr13 22241785 22242400 -79630769 - L1M4 LINE L1 -1131 5015 4389 318 289 33 43 chr13 22242606 22242817 -79630352 - L1M4 LINE L1 -1988 4158 3950 6739 67 53 0 chr13 22242838 22243215 -79629954 - L1PA7 LINE L1 0 6154 5798 2420 69 6 28 chr13 22243215 22243532 -79629637 - AluY SINE Alu -1 310 1 6739 67 53 0 chr13 22243532 22244175 -79628994 - L1PA7 LINE L1 -356 5798 5124 378 0 0 0 chr13 22244691 22244733 -79628436 + (CA)n Simple_repeat Simple_repeat 2 43 0 1746 145 27 10 chr13 22245077 22245373 -79627796 - AluSx SINE Alu -11 301 1 522 285 105 19 chr13 22245653 22246025 -79627144 - L1M4 LINE L1 -2393 3753 3350 282 259 12 0 chr13 22246332 22246413 -79626756 + MLT1I LTR MaLR 326 407 -2 1948 132 0 43 chr13 22246551 22246877 -79626292 - AluSx SINE Alu 0 312 1 311 282 26 51 chr13 22246912 22247107 -79626062 - L1M4 LINE L1 -2993 3153 2964 1593 161 98 0 chr13 22247146 22247420 -79625749 + AluJo SINE Alu 9 309 -3 354 255 138 7 chr13 22247762 22247907 -79625262 - L1M4 LINE L1 -3647 2499 2336 261 248 103 8 chr13 22248064 22248181 -79624988 - L1MC5 LINE L1 -52 7909 7782 21 57 0 0 chr13 22248309 22248344 -79624825 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 22248441 22248462 -79624707 + AT_rich Low_complexity Low_complexity 1 21 0 379 319 125 83 chr13 22248533 22248680 -79624489 - L2 LINE L2 -422 2892 2753 2172 117 3 3 chr13 22248680 22248980 -79624189 + AluSq SINE Alu 1 300 -13 379 319 125 83 chr13 22248980 22250299 -79622870 - L2 LINE L2 -561 2753 1365 288 328 108 53 chr13 22251293 22251634 -79621535 - L2 LINE L2 -8 3305 2946 204 185 31 15 chr13 22253157 22253222 -79619947 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 1022 249 39 0 chr13 22253225 22253482 -79619687 + Tigger3(Golem) DNA MER2_type 17 283 -2746 5703 92 62 1 chr13 22253665 22255084 -79618085 + L1PA11 LINE L1 4697 6174 0 700 174 17 0 chr13 22255088 22255203 -79617966 - FLAM_C SINE Alu -16 117 1 196 262 0 0 chr13 22255607 22255649 -79617520 + MIR3 SINE MIR 162 203 -5 18356 111 9 13 chr13 22256237 22259245 -79613924 - L1P3 LINE L1 -2304 4157 1162 679 98 0 0 chr13 22259243 22259335 -79613834 - L1P3 LINE L1 -6365 96 5 * 381 237 46 15 chr13 22260144 22260275 -79612894 - MER103 DNA DNA -30 136 2 258 229 0 0 chr13 22260989 22261059 -79612110 - L1ME2 LINE L1 -13 6151 6082 201 176 0 0 chr13 22261498 22261532 -79611637 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 26 30 0 0 chr13 22261706 22261739 -79611430 + AT_rich Low_complexity Low_complexity 1 33 0 193 289 48 48 chr13 22263534 22263638 -79609531 + MIR SINE MIR 112 215 -47 7245 161 112 113 chr13 22263918 22265525 -79607644 + L1MC3 LINE L1 5433 7041 -744 847 156 0 15 chr13 22265525 22265660 -79607509 + AluJ SINE Alu 1 133 -169 7245 161 112 113 chr13 22265660 22265694 -79607475 + L1MC3 LINE L1 7041 7074 -711 1114 165 28 0 chr13 22265694 22265876 -79607293 + AluJ SINE Alu 122 308 -4 7245 161 112 113 chr13 22265876 22266399 -79606770 + L1MC3 LINE L1 7074 7776 -9 31 26 0 0 chr13 22266875 22266913 -79606256 + AT_rich Low_complexity Low_complexity 1 38 0 322 272 228 0 chr13 22267466 22267580 -79605589 + MIR3 SINE MIR 31 170 -38 21 36 0 0 chr13 22267732 22267760 -79605409 + AT_rich Low_complexity Low_complexity 1 28 0 1654 258 51 42 chr13 22268547 22269417 -79603752 - L1M4 LINE L1 -833 5313 4437 645 301 84 3 chr13 22269703 22270049 -79603120 - LTR68 LTR ERV1 -366 374 1 238 313 81 30 chr13 22270060 22270159 -79603010 + L2 LINE L2 3204 3307 -6 1522 219 106 47 chr13 22270159 22270671 -79602498 - MLT1F LTR MaLR 0 542 1 261 211 19 19 chr13 22271959 22272011 -79601158 - L2 LINE L2 -16 3256 3205 1139 281 46 13 chr13 22273499 22273891 -79599278 - LTR16A LTR ERVL -39 411 7 1567 184 3 9 chr13 22275184 22275500 -79597669 - L1ME2 LINE L1 -376 5936 5623 327 237 86 59 chr13 22275540 22275692 -79597477 + L1MA9 LINE L1 6119 6274 -38 23 0 0 0 chr13 22275692 22275715 -79597454 + AT_rich Low_complexity Low_complexity 1 23 0 349 200 13 13 chr13 22275746 22275821 -79597348 + MER21B LTR ERV1 16 90 -773 27 49 0 0 chr13 22275969 22276010 -79597159 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr13 22276066 22276088 -79597081 + AT_rich Low_complexity Low_complexity 1 22 0 845 252 160 69 chr13 22279186 22279322 -79593847 - MLT1E LTR MaLR -68 525 403 2339 70 10 3 chr13 22279322 22279622 -79593547 - AluY SINE Alu -9 302 1 845 252 160 69 chr13 22279622 22279714 -79593455 - MLT1E LTR MaLR -190 403 321 3505 152 0 4 chr13 22279714 22280242 -79592927 - MER1A DNA MER1_type 0 527 2 845 252 160 69 chr13 22280242 22280493 -79592676 - MLT1E LTR MaLR -272 321 1 260 298 51 47 chr13 22280603 22281247 -79591922 - L1M4 LINE L1 -2169 3977 3331 1626 191 40 35 chr13 22281484 22281856 -79591313 - MLT1A2 LTR MaLR 0 374 1 2029 214 30 13 chr13 22281879 22282338 -79590831 + MLT1C LTR MaLR 1 467 0 399 256 192 0 chr13 22283488 22283644 -79589525 + L2 LINE L2 2852 3037 -276 1996 206 84 4 chr13 22283678 22284163 -79589006 - MER74A LTR ERVL -30 528 5 4723 119 29 6 chr13 22284334 22285057 -79588112 + L1PA16 LINE L1 5418 6157 -9 791 197 0 0 chr13 22285647 22285794 -79587375 - MLT1A1 LTR MaLR -48 317 171 2617 42 0 3 chr13 22286144 22286454 -79586715 - AluYa5 SINE Alu -2 309 1 11831 81 7 0 chr13 22286455 22288559 -79584610 - L1P3 LINE L1 -393 5779 3668 298 119 0 0 chr13 22288556 22288598 -79584571 + L1P3 LINE L1 29 70 -6391 * 1040 211 87 16 chr13 22288767 22289090 -79584079 - LTR48B LTR ERV1 0 644 299 605 163 0 47 chr13 22289190 22289319 -79583850 - FAM SINE Alu -62 123 1 288 296 96 32 chr13 22289535 22289660 -79583509 - MER5B DNA MER1_type -4 174 42 392 304 61 16 chr13 22289752 22289918 -79583251 + MIR SINE MIR 10 183 -70 477 203 12 28 chr13 22290496 22290749 -79582420 + GA-rich Low_complexity Low_complexity 1 248 0 21 57 0 0 chr13 22290998 22291033 -79582136 + AT_rich Low_complexity Low_complexity 1 35 0 1145 282 30 30 chr13 22291172 22291624 -79581545 + LTR40a LTR ERVL 5 448 -14 1244 242 21 9 chr13 22291649 22291980 -79581189 + HERVL40 LTR ERVL 17 351 -5179 1517 220 80 23 chr13 22292160 22292597 -79580572 + LTR40b LTR ERVL 1 462 0 369 232 99 110 chr13 22292597 22292932 -79580237 - LTR16A1 LTR ERVL -71 386 54 560 282 153 21 chr13 22294958 22295384 -79577785 - L1ME3A LINE L1 -219 5951 5470 1910 280 55 29 chr13 22295458 22295697 -79577472 - L1ME3A LINE L1 -26 6144 5913 216 0 0 0 chr13 22295697 22295721 -79577448 + (TG)n Simple_repeat Simple_repeat 2 25 0 1910 280 55 29 chr13 22295721 22296349 -79576820 - L1ME3A LINE L1 -257 5913 5254 2009 287 90 27 chr13 22296350 22297522 -79575647 - L1ME3A LINE L1 -2366 3780 2484 2193 142 63 36 chr13 22297522 22297937 -79575232 + MSTB LTR MaLR 1 426 0 2009 287 90 27 chr13 22297937 22298327 -79574842 - L1ME3A LINE L1 -3662 2484 2120 741 304 219 43 chr13 22298499 22299284 -79573885 + L3 LINE CR1 48 970 -607 291 212 0 30 chr13 22300050 22300149 -79573020 - HAL1 LINE L1 -1042 1465 1370 1485 260 124 27 chr13 22300165 22300290 -79572879 - HAL1 LINE L1 -124 2383 2272 2317 166 23 14 chr13 22300290 22300718 -79572451 + MSTB1 LTR MaLR 1 432 0 1485 260 124 27 chr13 22300718 22301416 -79571753 - HAL1 LINE L1 -235 2272 1480 894 265 68 68 chr13 22301458 22302065 -79571104 - HAL1 LINE L1 -1730 777 168 1595 223 7 0 chr13 22302065 22302352 -79570817 - AluJo SINE Alu -23 289 1 894 265 68 68 chr13 22302352 22302510 -79570659 - HAL1 LINE L1 -2338 169 12 333 221 12 0 chr13 22302522 22302608 -79570561 + MER103 DNA DNA 55 141 -25 414 232 14 49 chr13 22302631 22302773 -79570396 - MLT1I LTR MaLR -34 375 239 455 316 126 5 chr13 22303176 22303382 -79569787 + MIR SINE MIR 28 258 -4 1756 147 48 0 chr13 22303382 22303655 -79569514 + AluSq SINE Alu 1 286 -27 423 0 0 0 chr13 22303658 22303705 -79569464 + (TA)n Simple_repeat Simple_repeat 2 48 0 264 30 0 0 chr13 22303704 22303737 -79569432 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 186 191 0 0 chr13 22303741 22303783 -79569386 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2325 98 0 0 chr13 22304082 22304378 -79568791 + AluY SINE Alu 2 297 -14 1748 186 0 11 chr13 22304471 22304842 -79568327 + L1PA14 LINE L1 2290 2656 -3490 * 9328 187 10 12 chr13 22304838 22306813 -79566356 + L1PA14 LINE L1 3266 5236 -910 1964 105 28 50 chr13 22306819 22307182 -79565987 - THE1C LTR MaLR -20 355 1 5312 143 11 2 chr13 22307197 22308095 -79565074 + L1PA14 LINE L1 5254 6159 -2 3485 120 2 22 chr13 22308460 22309002 -79564167 + LTR26B LTR ERV1 1 531 0 3632 118 13 0 chr13 22310005 22310545 -79562624 + L1PA15 LINE L1 5610 6156 -9 21 0 0 0 chr13 22310555 22310576 -79562593 + AT_rich Low_complexity Low_complexity 1 21 0 567 189 139 137 chr13 22312498 22313002 -79560167 - MLT1D LTR MaLR 0 505 1 1675 181 28 19 chr13 22313164 22313528 -79559641 + THE1C LTR MaLR 1 367 -8 9288 115 45 17 chr13 22313528 22315063 -79558106 + THE1C-int LTR MaLR 3 1580 0 1663 164 66 23 chr13 22315078 22315425 -79557744 + THE1C LTR MaLR 14 375 0 1901 181 17 39 chr13 22315947 22316362 -79556807 - MLT2D LTR ERVL -8 406 1 964 299 129 55 chr13 22316929 22317085 -79556084 + L1MC4a LINE L1 4023 4166 -1980 1380 146 33 11 chr13 22317085 22317360 -79555809 - L1MA8 LINE L1 0 6291 6011 964 299 129 55 chr13 22317360 22317569 -79555600 + L1MC4a LINE L1 4166 4358 -1788 195 42 0 0 chr13 22317569 22317593 -79555576 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 964 299 129 55 chr13 22317593 22318225 -79554944 + L1MC4a LINE L1 4358 5095 -1051 336 273 86 8 chr13 22318254 22318382 -79554787 + L1MC4a LINE L1 5195 5332 -814 2020 125 0 40 chr13 22318386 22318707 -79554462 + AluSx SINE Alu 1 308 -4 766 294 109 27 chr13 22318737 22319223 -79553946 + L1MC4a LINE L1 5412 5937 -1871 879 250 23 5 chr13 22320516 22320736 -79552433 + MER58A DNA MER1_type 1 224 0 498 303 60 11 chr13 22320831 22321016 -79552153 + MIR SINE MIR 19 212 -50 456 186 41 0 chr13 22321100 22321197 -79551972 - MLT1H1 LTR MaLR -49 506 406 749 206 7 0 chr13 22321275 22321411 -79551758 + FLAM_C SINE Alu 1 137 -6 927 255 99 14 chr13 22321411 22321693 -79551476 - MLT1H1 LTR MaLR -247 308 3 808 125 18 60 chr13 22321712 22321880 -79551289 + L1M3f LINE L1 1 161 -5167 2037 135 10 0 chr13 22321967 22322264 -79550905 + AluSx SINE Alu 7 306 -6 4700 57 0 7 chr13 22323533 22324128 -79549041 + L1PA7 LINE L1 5558 6148 -6 32 43 0 0 chr13 22324161 22324207 -79548962 + AT_rich Low_complexity Low_complexity 1 46 0 253 278 67 11 chr13 22324411 22324501 -79548668 - MIR SINE MIR -50 212 118 405 254 159 32 chr13 22325029 22325218 -79547951 + L2 LINE L2 2943 3155 -117 266 172 153 24 chr13 22325992 22326075 -79547094 - MER5A DNA MER1_type -8 181 78 229 235 0 49 chr13 22328167 22328248 -79544921 - MER103 DNA DNA -73 93 17 1351 224 53 18 chr13 22328284 22328624 -79544545 - MLT1A1 LTR MaLR -11 354 3 395 326 125 42 chr13 22329791 22330144 -79543025 + MER115 DNA AcHobo 59 440 -253 522 287 60 12 chr13 22330294 22330461 -79542708 - MIR SINE MIR -21 241 67 2211 117 0 0 chr13 22331882 22332180 -79540989 + AluSx SINE Alu 1 298 -14 491 323 68 36 chr13 22332686 22332937 -79540232 + MIR SINE MIR 4 262 0 4629 161 52 13 chr13 22333101 22333592 -79539577 - L1MA8 LINE L1 -4 6287 5817 617 40 0 56 chr13 22333592 22333717 -79539452 + (TA)n Simple_repeat Simple_repeat 2 119 0 4629 161 52 13 chr13 22333717 22334421 -79538748 - L1MA8 LINE L1 -474 5817 5045 339 262 31 10 chr13 22334589 22334716 -79538453 + MER21B LTR ERV1 24 196 -409 * 1040 274 42 83 chr13 22334715 22335329 -79537840 + MER21B LTR ERV1 126 714 -149 25 0 0 0 chr13 22336358 22336383 -79536786 + AT_rich Low_complexity Low_complexity 1 25 0 2354 95 0 0 chr13 22336399 22336695 -79536474 + AluSg SINE Alu 1 296 -14 2201 280 35 54 chr13 22336941 22337923 -79535246 + L1M4b LINE L1 18 1217 -5642 1281 237 19 57 chr13 22338389 22338799 -79534370 + L1M4b LINE L1 1211 1590 -5265 2448 201 50 4 chr13 22338799 22339296 -79533873 + MLT2B1 LTR ERVL 1 520 0 1281 237 19 57 chr13 22339296 22339566 -79533603 + L1M4b LINE L1 1590 1869 -4986 312 27 0 0 chr13 22340185 22340222 -79532947 + (TG)n Simple_repeat Simple_repeat 2 38 0 309 329 62 50 chr13 22340287 22340448 -79532721 + L2 LINE L2 3017 3179 -93 393 247 14 7 chr13 22340512 22340658 -79532511 + GA-rich Low_complexity Low_complexity 2 148 0 381 291 0 0 chr13 22342323 22342488 -79530681 + (CA)n Simple_repeat Simple_repeat 1 165 0 495 268 0 0 chr13 22342509 22342819 -79530350 + (CA)n Simple_repeat Simple_repeat 1 310 0 204 322 44 11 chr13 22343795 22343885 -79529284 + MER5A DNA MER1_type 63 155 -34 322 363 105 36 chr13 22344551 22345120 -79528049 - L2 LINE L2 0 3272 2615 385 217 20 13 chr13 22345209 22345361 -79527808 + (TA)n Simple_repeat Simple_repeat 1 153 0 587 300 137 26 chr13 22346120 22346500 -79526669 - L2 LINE L2 -784 2530 2109 4496 135 30 1 chr13 22346942 22347639 -79525530 - LTR62 LTR ERVK -2 717 1 758 252 85 30 chr13 22347956 22348321 -79524848 - L1MC4a LINE L1 -1759 6049 5665 15765 82 5 0 chr13 22348807 22351304 -79521865 + L1P3 LINE L1 3079 5589 -565 322 314 77 48 chr13 22351475 22351682 -79521487 + L2 LINE L2 1860 2072 -1242 6775 118 20 63 chr13 22351806 22352021 -79521148 + Tigger3b DNA MER2_type 3 226 -2802 1172 139 28 5 chr13 22352021 22352237 -79520932 + L1MA5 LINE L1 6078 6298 -2 6775 118 20 63 chr13 22352237 22353015 -79520154 + Tigger3b DNA MER2_type 226 932 -2096 2253 75 0 0 chr13 22353015 22353356 -79519813 - AluSc SINE Alu 0 341 1 6775 118 20 63 chr13 22353356 22353643 -79519526 + Tigger3b DNA MER2_type 932 1230 -1 234 371 0 0 chr13 22353655 22353744 -79519425 + L2 LINE L2 2260 2348 -966 419 95 54 0 chr13 22353877 22353951 -79519218 - L1MA7 LINE L1 -5 6286 6209 1229 227 175 19 chr13 22354491 22355362 -79517807 - L1ME3 LINE L1 -3 6159 5155 197 400 110 0 chr13 22355492 22355592 -79517577 + L2 LINE L2 3141 3251 -21 180 0 0 0 chr13 22355891 22355911 -79517258 + (A)n Simple_repeat Simple_repeat 1 20 0 1608 161 48 45 chr13 22356691 22357001 -79516168 - AluSx SINE Alu -1 311 1 423 0 0 0 chr13 22358333 22358380 -79514789 + (TG)n Simple_repeat Simple_repeat 2 48 0 236 159 0 95 chr13 22360222 22360285 -79512884 - L1MC4 LINE L1 -26 8016 7960 1157 211 30 32 chr13 22360323 22360435 -79512734 - L1ME3 LINE L1 -1302 4844 4733 1935 167 50 18 chr13 22360435 22360819 -79512350 - MSTD LTR MaLR 0 396 1 1157 211 30 32 chr13 22360819 22361076 -79512093 - L1ME3 LINE L1 -1413 4733 4476 826 267 152 38 chr13 22362555 22362740 -79510429 + MLT1H LTR MaLR 1 164 -385 1654 166 33 33 chr13 22362740 22363047 -79510122 + AluJo SINE Alu 1 307 -5 826 267 152 38 chr13 22363047 22363336 -79509833 + MLT1H LTR MaLR 164 529 -20 330 271 0 12 chr13 22364790 22364875 -79508294 + MIR3 SINE MIR 86 169 -39 2610 142 42 2 chr13 22365115 22365525 -79507644 + MSTB LTR MaLR 1 426 0 4870 178 97 14 chr13 22365525 22365992 -79507177 + MSTB-int LTR MaLR 1 428 -1223 1704 197 7 0 chr13 22365992 22366291 -79506878 + AluJo SINE Alu 1 301 -11 4870 178 97 14 chr13 22366291 22366867 -79506302 + MSTB-int LTR MaLR 428 1130 -521 311 254 0 0 chr13 22366894 22366965 -79506204 + MSTB-int LTR MaLR 1581 1651 0 1780 152 34 133 chr13 22366966 22367440 -79505729 + MSTB LTR MaLR 2 426 0 334 224 182 79 chr13 22367535 22367700 -79505469 + MIR SINE MIR 79 260 -2 435 317 32 27 chr13 22369531 22369717 -79503452 - MIR SINE MIR -51 211 25 2477 45 7 10 chr13 22369820 22370130 -79503039 - AluY SINE Alu -2 309 1 185 299 247 0 chr13 22370601 22370678 -79502491 + MER5A DNA MER1_type 11 106 -83 1582 170 51 11 chr13 22370797 22371073 -79502096 - AluJo SINE Alu -25 287 1 272 278 0 28 chr13 22371090 22371162 -79502007 + L2 LINE L2 3203 3272 0 441 309 67 24 chr13 22371170 22371335 -79501834 - MIR SINE MIR -71 191 20 242 109 0 0 chr13 22371649 22371695 -79501474 + LTR66 LTR ERVL 394 439 -171 333 303 0 0 chr13 22371701 22371790 -79501379 - L1MC4 LINE L1 -1339 6703 6615 193 275 58 29 chr13 22372422 22372491 -79500678 - L2 LINE L2 -9 3263 3193 550 181 173 0 chr13 22373242 22373375 -79499794 - MER5A DNA MER1_type -33 156 1 340 326 49 43 chr13 22373381 22373565 -79499604 - MER5A DNA MER1_type -3 186 2 282 327 19 10 chr13 22373668 22373772 -79499397 - MIR SINE MIR -2 260 156 415 184 13 0 chr13 22373773 22373849 -79499320 - MER2 DNA MER2_type -1 344 268 721 190 7 15 chr13 22373902 22374039 -79499130 - AluJo SINE Alu -176 136 1 1163 166 5 0 chr13 22374061 22374266 -79498903 - MER2 DNA MER2_type -139 206 1 422 148 86 0 chr13 22374269 22374350 -79498819 - MIR SINE MIR -105 157 70 2511 55 0 13 chr13 22374559 22374866 -79498303 - AluY SINE Alu -8 303 1 314 317 150 42 chr13 22375987 22376154 -79497015 - MIR3 SINE MIR -10 198 14 210 310 40 40 chr13 22376333 22376433 -79496736 - L2 LINE L2 -1 3271 3172 2375 147 15 0 chr13 22376572 22376980 -79496189 + L1MB4 LINE L1 5759 6172 -8 209 236 181 42 chr13 22377003 22377075 -79496094 + L2 LINE L2 3187 3268 -4 315 270 40 0 chr13 22377539 22377639 -79495530 - L1ME3 LINE L1 -53 6109 6006 341 22 22 0 chr13 22377684 22377730 -79495439 + (TTA)n Simple_repeat Simple_repeat 3 49 0 24 0 0 0 chr13 22378342 22378366 -79494803 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 22379681 22379702 -79493467 + AT_rich Low_complexity Low_complexity 1 21 0 948 191 108 0 chr13 22379899 22380093 -79493076 + MER58A DNA MER1_type 2 216 -8 285 292 103 17 chr13 22380150 22380584 -79492585 - L1MC4 LINE L1 -184 7777 7311 2430 91 3 0 chr13 22380717 22381026 -79492143 + AluSx SINE Alu 1 310 -2 180 284 28 64 chr13 22381323 22381432 -79491737 + L3b LINE CR1 1120 1224 -359 913 280 36 36 chr13 22382272 22382693 -79490476 - LTR16B LTR ERVL -41 423 3 971 257 78 20 chr13 22383794 22384140 -79489029 + MLT1C LTR MaLR 98 463 -4 6106 32 2 14 chr13 22386636 22387424 -79485745 + L1P LINE L1 4109 4887 -1259 1293 124 0 0 chr13 22388372 22388549 -79484620 + AluSg/x SINE Alu 136 312 0 1887 178 3 3 chr13 22388568 22388871 -79484298 + AluJb SINE Alu 1 303 -9 273 182 0 0 chr13 22388906 22388961 -79484208 + GA-rich Low_complexity Low_complexity 2 56 0 1776 158 3 17 chr13 22388968 22389266 -79483903 + AluJb SINE Alu 1 294 -18 1242 156 33 0 chr13 22389300 22389512 -79483657 - MER20 DNA MER1_type 0 219 1 1301 228 73 0 chr13 22389530 22389833 -79483336 - MLT1F LTR MaLR -4 538 214 335 220 20 0 chr13 22389921 22390021 -79483148 + GA-rich Low_complexity Low_complexity 4 105 0 287 263 66 33 chr13 22390044 22390224 -79482945 + L1MC4a LINE L1 5723 5915 -206 2182 119 30 0 chr13 22390896 22391199 -79481970 + AluSx SINE Alu 1 312 0 964 111 217 21 chr13 22391268 22391457 -79481712 - MER30 DNA MER1_type 0 230 5 1930 169 0 3 chr13 22391862 22392175 -79480994 + AluSx SINE Alu 1 312 0 188 328 0 31 chr13 22392310 22392374 -79480795 + L2 LINE L2 2678 2739 -575 198 206 0 0 chr13 22392416 22392479 -79480690 + A-rich Low_complexity Low_complexity 1 63 0 442 362 68 51 chr13 22392547 22392689 -79480480 + L2 LINE L2 2807 2945 -327 1968 170 11 11 chr13 22392689 22393054 -79480115 - MLT1A1 LTR MaLR 0 365 1 442 362 68 51 chr13 22393054 22393364 -79479805 + L2 LINE L2 2945 3267 -5 327 286 8 8 chr13 22393395 22393521 -79479648 - LTR67 LTR ERVL -6 551 426 344 315 108 79 chr13 22394373 22394678 -79478491 + L2 LINE L2 2928 3241 -31 1251 226 67 35 chr13 22394678 22394760 -79478409 + MLT1A1 LTR MaLR 1 79 -286 4543 50 2 0 chr13 22394760 22395318 -79477851 + L1PA8 LINE L1 5612 6170 -2 1251 226 67 35 chr13 22395318 22395576 -79477593 + MLT1A1 LTR MaLR 79 352 -13 23 0 0 0 chr13 22395618 22395641 -79477528 + AT_rich Low_complexity Low_complexity 1 23 0 1139 196 33 121 chr13 22395697 22396028 -79477141 - AluJb SINE Alu 0 302 1 25 65 0 0 chr13 22396211 22396257 -79476912 + AT_rich Low_complexity Low_complexity 1 46 0 236 128 0 0 chr13 22396300 22396339 -79476830 - Charlie7 DNA MER1_type -300 2312 2274 989 259 68 63 chr13 22396513 22396657 -79476512 - Charlie7 DNA MER1_type -2045 567 425 2272 103 0 31 chr13 22396657 22396976 -79476193 - AluSg SINE Alu -1 309 1 989 259 68 63 chr13 22396976 22397388 -79475781 - Charlie7 DNA MER1_type -2187 425 8 2282 109 0 10 chr13 22397821 22398132 -79475037 + AluSc SINE Alu 1 308 -1 459 296 159 6 chr13 22398303 22398479 -79474690 + L3 LINE CR1 1370 1572 -5 933 148 22 50 chr13 22398765 22398947 -79474222 + AluJb SINE Alu 118 294 -18 910 127 0 36 chr13 22398976 22399142 -79474027 - MER51C LTR ERV1 0 640 481 763 116 16 8 chr13 22399142 22399263 -79473906 - MER83A-int LTR ERV1 -28 7788 7667 1975 152 129 62 chr13 22399269 22399788 -79473381 + MER41A LTR ERV1 1 554 0 744 261 41 59 chr13 22400008 22400399 -79472770 - MER83A-int LTR ERV1 -343 8576 3452 5563 60 29 7 chr13 22400417 22400446 -79472723 - MER4E LTR ERV1 0 766 739 2158 105 7 10 chr13 22400446 22400740 -79472429 - AluSp SINE Alu -20 293 1 5563 60 29 7 chr13 22400740 22401459 -79471710 - MER4E LTR ERV1 -27 739 1 402 21 0 0 chr13 22401627 22401674 -79471495 + (CA)n Simple_repeat Simple_repeat 1 47 0 1096 128 24 12 chr13 22401779 22401943 -79471226 - AluSg/x SINE Alu -10 302 137 974 219 63 51 chr13 22402235 22402716 -79470453 - LTR10B LTR ERV1 -5 542 17 1412 51 0 6 chr13 22402823 22402999 -79470170 + AluY SINE Alu 119 293 -18 2099 117 3 0 chr13 22403170 22403460 -79469709 - AluSx SINE Alu -21 291 1 205 139 56 0 chr13 22403529 22403565 -79469604 + GA-rich Low_complexity Low_complexity 5 42 0 212 358 32 21 chr13 22403613 22403708 -79469461 - MER5A DNA MER1_type -59 130 35 * 291 196 0 0 chr13 22403675 22403721 -79469448 + MER5A DNA MER1_type 134 179 -10 21 57 0 0 chr13 22404025 22404060 -79469109 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr13 22404727 22404768 -79468401 + AT_rich Low_complexity Low_complexity 1 41 0 2131 107 3 17 chr13 22405788 22406088 -79467081 - AluSx SINE Alu -16 296 1 451 57 11 45 chr13 22406370 22406458 -79466711 + (TTCC)n Simple_repeat Simple_repeat 1 85 0 2023 120 10 10 chr13 22406458 22406757 -79466412 - AluSc SINE Alu -9 300 2 10174 193 54 47 chr13 22407435 22409659 -79463510 + L1M4c LINE L1 24 2232 -4150 1823 203 3 0 chr13 22409659 22409970 -79463199 + AluJb SINE Alu 1 312 0 10174 193 54 47 chr13 22409970 22410073 -79463096 + L1M4c LINE L1 2232 2333 -4049 317 24 24 0 chr13 22410073 22410115 -79463054 + (CA)n Simple_repeat Simple_repeat 2 44 0 10174 193 54 47 chr13 22410115 22410545 -79462624 + L1M4c LINE L1 2333 2759 -3623 1896 145 28 0 chr13 22410545 22410828 -79462341 + AluSq SINE Alu 1 291 -22 10174 193 54 47 chr13 22410828 22411541 -79461628 + L1M4c LINE L1 2759 3510 -2872 308 210 27 71 chr13 22411729 22411960 -79461209 + MLT1J LTR MaLR 220 450 0 669 206 24 0 chr13 22414916 22415042 -79458127 - FLAM_A SINE Alu -4 129 1 254 261 0 46 chr13 22415103 22415168 -79458001 - L2 LINE L2 0 3272 3211 246 302 0 0 chr13 22415465 22415528 -79457641 + MIR SINE MIR 92 154 -108 236 213 131 0 chr13 22415675 22415736 -79457433 + L2 LINE L2 3242 3310 -3 2276 124 0 0 chr13 22415786 22416092 -79457077 + AluSx SINE Alu 1 306 -6 316 254 28 0 chr13 22418922 22418993 -79454176 - L2 LINE L2 -10 3303 3231 235 336 58 39 chr13 22420392 22420496 -79452673 + L2 LINE L2 3134 3239 -33 210 321 38 61 chr13 22421530 22421610 -79451559 - L3 LINE CR1 -520 1057 980 2233 36 96 0 chr13 22421610 22421890 -79451279 - AluY SINE Alu -4 307 1 210 321 38 61 chr13 22421890 22421940 -79451229 - L3 LINE CR1 -597 980 930 253 282 13 0 chr13 22422045 22422123 -79451046 - MIR SINE MIR -66 142 59 282 211 78 33 chr13 22422234 22422324 -79450845 - L3 LINE CR1 -1013 564 471 1044 231 28 24 chr13 22422780 22423031 -79450138 + MIR SINE MIR 6 257 -5 564 221 156 7 chr13 22424243 22424397 -79448772 - MER5B DNA MER1_type -1 177 1 2200 131 3 0 chr13 22425919 22426224 -79446945 - AluSq SINE Alu -7 306 1 272 173 5 218 chr13 22426361 22426498 -79446671 - MER5B DNA MER1_type -64 125 2 227 295 91 73 chr13 22426931 22427273 -79445896 - L2 LINE L2 -417 2897 2550 232 277 0 0 chr13 22427282 22427347 -79445822 + MER94 DNA DNA 9 73 -61 735 165 9 0 chr13 22427351 22427466 -79445703 + FLAM_C SINE Alu 1 116 -17 269 213 0 0 chr13 22427482 22427543 -79445626 + MER94 DNA DNA 64 124 -10 246 183 122 69 chr13 22427624 22427755 -79445414 - L2 LINE L2 -1037 2277 2140 232 310 0 0 chr13 22428458 22428529 -79444640 - MIR SINE MIR -82 126 56 230 326 146 56 chr13 22430956 22431134 -79442035 - MIR3 SINE MIR -8 200 7 539 270 49 6 chr13 22431417 22431580 -79441589 + MIR SINE MIR 79 248 -14 2624 48 0 0 chr13 22432549 22432859 -79440310 - AluY SINE Alu -1 310 1 21 36 0 0 chr13 22433697 22433725 -79439444 + AT_rich Low_complexity Low_complexity 1 28 0 2419 90 0 0 chr13 22434007 22434307 -79438862 + AluSq SINE Alu 1 300 -13 1695 143 71 0 chr13 22435222 22435502 -79437667 - AluJo SINE Alu -12 300 1 30 69 0 0 chr13 22435601 22435659 -79437510 + AT_rich Low_complexity Low_complexity 1 58 0 429 240 8 8 chr13 22435747 22435872 -79437297 + L1ME1 LINE L1 5007 5131 -1015 2970 227 33 50 chr13 22435883 22436855 -79436314 + L1ME1 LINE L1 5225 6150 -16 2293 87 0 13 chr13 22436855 22437153 -79436016 + AluSx SINE Alu 1 294 -18 326 248 20 67 chr13 22437153 22437187 -79435982 + L1MA10 LINE L1 6300 6334 0 344 153 0 28 chr13 22437222 22437294 -79435875 + GA-rich Low_complexity Low_complexity 1 70 0 438 244 111 15 chr13 22437305 22437440 -79435729 + MIR SINE MIR 21 168 -94 210 71 0 0 chr13 22438612 22438640 -79434529 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 623 283 130 40 chr13 22439409 22439762 -79433407 - L3 LINE CR1 -15 1562 1178 202 289 0 66 chr13 22439754 22439830 -79433339 + L2 LINE L2 3192 3262 -10 * 1960 155 16 16 chr13 22440398 22440772 -79432397 + MLT1B LTR MaLR 17 390 0 21 0 0 0 chr13 22441020 22441041 -79432128 + AT_rich Low_complexity Low_complexity 1 21 0 278 45 136 0 chr13 22441105 22441149 -79432020 - MADE1 DNA Mariner 0 80 31 337 221 71 0 chr13 22441400 22441513 -79431656 - MER112 DNA MER1_type -59 201 81 1300 240 57 64 chr13 22441513 22442090 -79431079 - L2 LINE L2 -2 3311 2719 858 227 0 0 chr13 22442119 22442282 -79430887 + FRAM SINE Alu 1 159 -17 230 279 82 66 chr13 22442450 22442562 -79430607 - MER5A DNA MER1_type -3 186 68 1703 146 36 14 chr13 22442562 22442843 -79430326 - AluJo SINE Alu -25 287 1 230 279 82 66 chr13 22442843 22442913 -79430256 - MER5A DNA MER1_type -121 68 1 265 215 46 0 chr13 22442929 22442994 -79430175 + MIR SINE MIR 56 123 -139 252 256 13 26 chr13 22443915 22443993 -79429176 + MIR3 SINE MIR 9 85 -123 941 209 6 0 chr13 22444132 22444304 -79428865 + MER5A DNA MER1_type 17 189 0 1056 153 6 12 chr13 22444625 22444795 -79428374 + AluJo SINE Alu 1 169 -143 1253 123 15 15 chr13 22444795 22444990 -79428179 + AluJb SINE Alu 118 312 0 615 258 107 30 chr13 22445277 22445548 -79427621 - MLT1K LTR MaLR 0 588 297 243 360 0 0 chr13 22445751 22445840 -79427329 - L2 LINE L2 -649 2665 2577 2022 129 7 10 chr13 22446018 22446321 -79426848 + AluSx SINE Alu 1 302 -10 1549 198 85 0 chr13 22448730 22449059 -79424110 + MLT1A1 LTR MaLR 1 357 -8 338 300 36 27 chr13 22449212 22449322 -79423847 - MIR SINE MIR -81 127 17 225 0 0 0 chr13 22449375 22449400 -79423769 + (A)n Simple_repeat Simple_repeat 1 25 0 208 310 0 0 chr13 22449427 22449485 -79423684 + L2 LINE L2 3244 3301 -12 326 307 54 83 chr13 22450669 22450910 -79422259 + MIR SINE MIR 8 241 -21 242 143 20 0 chr13 22451822 22451871 -79421298 + T-rich Low_complexity Low_complexity 4 53 0 816 155 83 22 chr13 22452272 22452453 -79420716 + LTR47A LTR ERVL 261 452 0 194 189 75 0 chr13 22452739 22452792 -79420377 + L2 LINE L2 2433 2489 -825 393 276 40 60 chr13 22452804 22453003 -79420166 - MIR SINE MIR 0 262 68 204 305 198 0 chr13 22452999 22453196 -79419973 + L2 LINE L2 2505 2740 -574 * 934 80 0 24 chr13 22453196 22453321 -79419848 + AluSq/x SINE Alu 22 143 -169 848 114 0 0 chr13 22453424 22453538 -79419631 + AluSg/x SINE Alu 190 303 -7 418 333 113 0 chr13 22453557 22453743 -79419426 + L2 LINE L2 2771 2977 -337 210 261 0 0 chr13 22453753 22453799 -79419370 + L2 LINE L2 3263 3308 -5 422 296 59 38 chr13 22454797 22455084 -79418085 + LTR16A1 LTR ERVL 162 454 -3 24 0 0 0 chr13 22455624 22455648 -79417521 + AT_rich Low_complexity Low_complexity 1 24 0 200 256 0 0 chr13 22455863 22455902 -79417267 + polypyrimidine Low_complexity Low_complexity 3 41 0 448 298 88 77 chr13 22455907 22456283 -79416886 - L2 LINE L2 0 3313 2934 423 297 0 0 chr13 22456471 22456582 -79416587 - L2 LINE L2 -13 3300 3190 181 326 70 12 chr13 22457515 22457601 -79415568 + L2 LINE L2 3223 3313 0 367 236 114 65 chr13 22457758 22457881 -79415288 - MIR SINE MIR -112 150 22 2935 131 7 2 chr13 22458029 22458456 -79414713 + MER57B LTR ERV1 1 429 -5 361 279 36 9 chr13 22459234 22459345 -79413824 - L1MC4 LINE L1 -1319 6723 6610 322 283 0 22 chr13 22459264 22459356 -79413813 + L1MC4 LINE L1 6614 6703 -1339 * 236 188 0 0 chr13 22459358 22459406 -79413763 - LTR66 LTR ERVL -169 441 394 2115 92 31 20 chr13 22459426 22459718 -79413451 - AluSx SINE Alu -14 298 4 2099 86 45 7 chr13 22459880 22460172 -79412997 + AluY SINE Alu 1 303 -8 6675 239 28 23 chr13 22460530 22463323 -79409846 + L1PA8 LINE L1 2190 4940 -2644 1651 186 0 7 chr13 22463323 22463651 -79409518 + AluJb SINE Alu 1 312 0 6675 239 28 23 chr13 22463651 22463735 -79409434 + L1PA8 LINE L1 4940 5022 -2562 6275 183 36 37 chr13 22463739 22465326 -79407843 + L1PA8 LINE L1 5383 6983 -627 1997 100 36 0 chr13 22465326 22465606 -79407563 + AluSg SINE Alu 1 290 -20 6275 183 36 37 chr13 22465606 22466234 -79406935 + L1PA8 LINE L1 6983 7610 0 2236 75 11 0 chr13 22466446 22466754 -79406415 - AluY SINE Alu 0 311 1 2404 90 0 6 chr13 22467740 22468051 -79405118 - AluSc SINE Alu 0 309 1 1033 233 94 0 chr13 22468207 22468495 -79404674 + L1MC4 LINE L1 7728 8042 0 2436 125 117 5 chr13 22468532 22468917 -79404252 + MSTA LTR MaLR 1 428 0 279 180 0 0 chr13 22469840 22469884 -79403285 - MER58A DNA MER1_type 0 224 181 542 220 85 0 chr13 22469884 22470002 -79403167 - MER58A DNA MER1_type 0 128 1 671 184 18 0 chr13 22470338 22470452 -79402717 - Tigger3(Golem) DNA MER2_type -5 3024 2909 435 235 0 0 chr13 22470458 22470539 -79402630 - Tigger3(Golem) DNA MER2_type -2948 81 1 763 128 0 32 chr13 22471088 22471213 -79401956 - L1PA8 LINE L1 0 6172 6052 2163 229 67 20 chr13 22472999 22473493 -79399676 - LTR40a LTR ERVL -2 517 1 1367 171 0 0 chr13 22473603 22473820 -79399349 + L1PA16 LINE L1 5950 6166 0 1542 136 0 21 chr13 22474479 22474714 -79398455 + AluSx SINE Alu 1 230 -82 2223 118 0 0 chr13 22474738 22475044 -79398125 + AluSc SINE Alu 1 306 -3 429 141 0 0 chr13 22476004 22476075 -79397094 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 181 341 82 12 chr13 22476132 22476217 -79396952 + L2 LINE L2 3172 3262 -10 22 0 0 0 chr13 22477309 22477331 -79395838 + AT_rich Low_complexity Low_complexity 1 22 0 195 350 25 0 chr13 22477491 22477571 -79395598 + L3 LINE CR1 1493 1574 -3 199 231 26 0 chr13 22477918 22477957 -79395212 - L2 LINE L2 -14 3258 3219 248 335 32 19 chr13 22478583 22478738 -79394431 + MLT1L LTR MaLR 450 606 -9 251 207 0 35 chr13 22480140 22480198 -79392971 + MER58A DNA MER1_type 28 83 -24 5239 106 15 18 chr13 22480198 22480992 -79392177 + L1PA16 LINE L1 5375 6166 0 474 202 56 0 chr13 22481022 22481111 -79392058 + MER58A DNA MER1_type 131 224 0 518 237 21 53 chr13 22481177 22481367 -79391802 + L2 LINE L2 3128 3311 -2 2118 130 3 0 chr13 22481845 22482144 -79391025 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr13 22483103 22483126 -79390043 + AT_rich Low_complexity Low_complexity 1 23 0 269 269 28 46 chr13 22483295 22483403 -79389766 + LTR48B LTR ERV1 1 106 -538 * 1384 217 39 77 chr13 22483370 22483836 -79389333 + MER39 LTR ERV1 260 707 0 361 291 36 55 chr13 22483854 22484074 -79389095 + L1ME LINE L1 5607 5822 -299 213 277 77 71 chr13 22484318 22484473 -79388696 + L2 LINE L2 2918 3073 -240 259 360 90 9 chr13 22484611 22484722 -79388447 + L2 LINE L2 3153 3272 0 3832 132 0 22 chr13 22486765 22486947 -79386222 + MER1A DNA MER1_type 1 186 -2514 1900 131 64 0 chr13 22486947 22487229 -79385940 - AluSx SINE Alu -12 300 1 3832 132 0 22 chr13 22487229 22487585 -79385584 + MER1A DNA MER1_type 186 527 0 990 275 86 43 chr13 22487910 22488115 -79385054 + LTR38 LTR ERV1 94 289 -267 2536 156 2 63 chr13 22488115 22488577 -79384592 - MER57B LTR ERV1 0 434 1 990 275 86 43 chr13 22488577 22488815 -79384354 + LTR38 LTR ERV1 289 556 0 1959 110 50 17 chr13 22488824 22489124 -79384045 - AluSg SINE Alu 0 310 1 21 0 0 0 chr13 22489275 22489296 -79383873 + AT_rich Low_complexity Low_complexity 1 21 0 1028 172 25 39 chr13 22489792 22489996 -79383173 - MER3 DNA MER1_type 0 209 9 256 259 32 127 chr13 22490318 22490538 -79382631 + LTR33A LTR ERVL 325 523 0 266 211 189 21 chr13 22492873 22492968 -79380201 - MIR SINE MIR -79 129 19 262 227 160 0 chr13 22493104 22493179 -79379990 + Charlie8 DNA MER1_type 129 215 -2202 23 54 0 0 chr13 22493581 22493618 -79379551 + AT_rich Low_complexity Low_complexity 1 37 0 2249 114 3 0 chr13 22493703 22494009 -79379160 + AluSg SINE Alu 1 307 -3 264 271 105 38 chr13 22494011 22494144 -79379025 - MIR SINE MIR -108 154 13 281 149 0 21 chr13 22494987 22495034 -79378135 + MIR SINE MIR 102 147 -61 1272 178 0 9 chr13 22496731 22496961 -79376208 + AluJo SINE Alu 84 311 -1 706 194 76 0 chr13 22496982 22497126 -79376043 + L1PB4 LINE L1 6000 6154 -2 2179 97 0 7 chr13 22497147 22497456 -79375713 + AluSx SINE Alu 1 307 0 290 220 68 61 chr13 22497781 22497913 -79375256 + MIR SINE MIR 63 195 -67 186 43 0 0 chr13 22497913 22497936 -79375233 + (TG)n Simple_repeat Simple_repeat 2 24 0 2317 75 4 0 chr13 22498747 22499058 -79374111 + AluSq SINE Alu 1 312 0 32 56 0 14 chr13 22499234 22499285 -79373884 + AT_rich Low_complexity Low_complexity 1 52 -18 2007 177 33 3 chr13 22499285 22499619 -79373550 - MER2 DNA MER2_type 0 344 1 32 56 0 14 chr13 22499619 22499638 -79373531 + AT_rich Low_complexity Low_complexity 52 70 0 1615 152 21 128 chr13 22500123 22500369 -79372800 - MLT1B LTR MaLR -7 383 201 1703 184 7 3 chr13 22500369 22500674 -79372495 - AluJo SINE Alu -6 306 1 1615 152 21 128 chr13 22500674 22500856 -79372313 - MLT1B LTR MaLR -189 201 1 283 368 60 8 chr13 22501216 22501333 -79371836 - MIR3 SINE MIR -84 124 2 1937 185 81 27 chr13 22502757 22502948 -79370221 + MLT1C LTR MaLR 1 180 -287 1894 156 10 10 chr13 22502948 22503243 -79369926 + AluJb SINE Alu 1 295 -17 1937 185 81 27 chr13 22503243 22503266 -79369903 + MLT1C LTR MaLR 180 200 -267 219 69 0 0 chr13 22503266 22503295 -79369874 + (CA)n Simple_repeat Simple_repeat 2 30 0 1937 185 81 27 chr13 22503295 22503522 -79369647 + MLT1C LTR MaLR 200 467 0 225 108 0 0 chr13 22504341 22504378 -79368791 + (TG)n Simple_repeat Simple_repeat 2 38 0 2251 132 6 9 chr13 22505079 22505419 -79367750 + MER1B DNA MER1_type 1 339 0 2278 113 3 0 chr13 22506246 22506555 -79366614 + AluSp SINE Alu 1 310 -3 595 254 0 8 chr13 22506756 22506886 -79366283 - MER3 DNA MER1_type -80 129 1 2913 3 0 0 chr13 22506936 22507246 -79365923 + AluYa5 SINE Alu 1 310 -1 1081 179 17 101 chr13 22508405 22508663 -79364506 + MER33 DNA MER1_type 6 229 -2356 1782 169 0 17 chr13 22508663 22508964 -79364205 - AluJo SINE Alu -16 296 1 1081 179 17 101 chr13 22508964 22509051 -79364118 + MER33 DNA MER1_type 229 322 -2 344 318 104 65 chr13 22510757 22510875 -79362294 + L2 LINE L2 2912 3024 -289 722 183 27 70 chr13 22510875 22511061 -79362108 + MER5B DNA MER1_type 1 178 0 344 318 104 65 chr13 22511061 22511326 -79361843 + L2 LINE L2 3024 3310 -3 2478 93 0 0 chr13 22515607 22515918 -79357251 + AluSx SINE Alu 2 312 0 209 59 59 0 chr13 22516217 22516251 -79356918 + GA-rich Low_complexity Low_complexity 5 40 0 440 293 48 6 chr13 22518210 22518377 -79354792 + MLT1J2 LTR MaLR 3 176 -274 270 251 61 25 chr13 22518465 22518589 -79354580 + MLT1J1 LTR MaLR 290 418 -28 620 290 71 44 chr13 22518904 22519077 -79354092 - MIR SINE MIR 0 262 78 2312 93 0 3 chr13 22519077 22519379 -79353790 + AluSg1 SINE Alu 1 301 -8 620 290 71 44 chr13 22519379 22519457 -79353712 - MIR SINE MIR -184 78 4 648 158 7 96 chr13 22519870 22520016 -79353153 - FLAM_A SINE Alu 0 133 1 1751 251 46 2 chr13 22520117 22520642 -79352527 - L1ME3A LINE L1 -12 6158 5611 539 268 0 8 chr13 22522664 22522787 -79350382 + L2 LINE L2 3191 3312 -1 30 0 0 0 chr13 22525434 22525464 -79347705 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 22526112 22526134 -79347035 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 22526279 22526309 -79346860 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 22527876 22527902 -79345267 + AT_rich Low_complexity Low_complexity 1 26 0 2116 117 47 3 chr13 22528746 22529045 -79344124 + AluSp SINE Alu 1 312 -1 2676 76 8 24 chr13 22529190 22529571 -79343598 - THE1C LTR MaLR 0 375 1 1142 165 0 0 chr13 22529851 22530027 -79343142 - AluSq SINE Alu -9 304 129 261 370 101 21 chr13 22530125 22530452 -79342717 - L2 LINE L2 -409 2905 2553 2774 207 84 26 chr13 22531334 22532260 -79340909 - L1ME1 LINE L1 -3 6163 5190 541 250 0 0 chr13 22532277 22532389 -79340780 - FLAM_A SINE Alu -18 115 4 1761 202 9 40 chr13 22532416 22532639 -79340530 - L1MB4 LINE L1 0 6180 5975 2446 90 3 0 chr13 22532639 22532951 -79340218 - AluSp SINE Alu 0 313 1 1761 202 9 40 chr13 22532951 22533157 -79340012 - L1MB4 LINE L1 -205 5975 5764 1242 183 10 29 chr13 22533183 22533495 -79339674 - L1ME1 LINE L1 -985 5161 4856 5794 229 85 16 chr13 22533517 22534172 -79338997 - L1ME1 LINE L1 -1794 4352 3743 2291 140 37 57 chr13 22534172 22534608 -79338561 + MSTA LTR MaLR 2 428 0 5794 229 85 16 chr13 22534608 22536031 -79337138 - L1ME1 LINE L1 -2403 3743 2131 1537 288 19 19 chr13 22536088 22536554 -79336615 + L2 LINE L2 1750 2215 -1099 671 293 79 27 chr13 22536555 22536976 -79336193 + LTR16A LTR ERVL 1 450 0 5503 87 93 0 chr13 22536994 22537750 -79335419 + LTR12 LTR ERV1 1 826 0 1053 58 0 0 chr13 22537750 22537883 -79335286 + LTR12 LTR ERV1 582 714 0 1353 268 39 88 chr13 22537890 22538334 -79334835 + L2 LINE L2 2235 2699 -614 1314 161 99 68 chr13 22538334 22538688 -79334481 + MLT1A1 LTR MaLR 1 365 0 1353 268 39 88 chr13 22538688 22539276 -79333893 + L2 LINE L2 2699 3302 -11 186 103 0 0 chr13 22539276 22539305 -79333864 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 520 336 129 4 chr13 22540607 22540839 -79332330 - MIR SINE MIR -1 261 1 4030 209 86 34 chr13 22540977 22541206 -79331963 + Charlie1a DNA MER1_type 70 286 -2475 2863 22 0 0 chr13 22541206 22541522 -79331647 + AluYb8 SINE Alu 1 316 -2 4030 209 86 34 chr13 22541522 22542605 -79330564 + Charlie1a DNA MER1_type 286 1451 -4 2181 168 30 5 chr13 22543642 22544046 -79329123 + MSTA LTR MaLR 3 416 -12 2496 51 3 0 chr13 22544053 22544348 -79328821 + AluY SINE Alu 1 296 -15 8612 170 33 14 chr13 22544363 22545981 -79327188 + MSTA-int LTR MaLR 2 1651 0 2655 123 28 14 chr13 22545981 22546403 -79326766 + MSTA LTR MaLR 1 428 0 559 260 0 8 chr13 22546779 22546906 -79326263 + FLAM_C SINE Alu 1 126 -17 1454 160 13 78 chr13 22547046 22547155 -79326014 - AluJo SINE Alu -25 287 172 2219 126 30 38 chr13 22547155 22547521 -79325648 + THE1B LTR MaLR 2 364 0 1454 160 13 78 chr13 22547521 22547718 -79325451 - AluJo SINE Alu -140 172 1 1722 179 4 4 chr13 22547959 22548239 -79324930 - AluJb SINE Alu -26 286 7 2331 105 3 0 chr13 22548256 22548561 -79324608 - AluSq SINE Alu -7 306 1 228 329 147 59 chr13 22548962 22549132 -79324037 + MIR3 SINE MIR 11 195 -13 210 118 0 0 chr13 22549352 22549386 -79323783 + (TC)n Simple_repeat Simple_repeat 1 34 0 1526 192 17 79 chr13 22549430 22549837 -79323332 + MSTD LTR MaLR 1 382 -14 4443 232 63 31 chr13 22549842 22550143 -79323026 + MSTD-int LTR MaLR 2 292 -1443 1736 151 100 6 chr13 22550143 22550474 -79322695 + MER47A DNA MER2_type 2 363 -3 4443 232 63 31 chr13 22550474 22551412 -79321757 + MSTD-int LTR MaLR 292 1281 -454 1012 231 78 11 chr13 22551413 22551681 -79321488 + MSTD LTR MaLR 104 389 -7 379 313 76 8 chr13 22553038 22553169 -79320000 - MIR SINE MIR -76 186 47 491 176 20 0 chr13 22553547 22553649 -79319520 - U13 snRNA snRNA 0 104 1 192 179 13 115 chr13 22556710 22556788 -79316381 - L2 LINE L2 -61 3252 3183 350 179 26 13 chr13 22557121 22557199 -79315970 - MER116 DNA Mariner -1 79 1 198 0 0 0 chr13 22558353 22558375 -79314794 + (TG)n Simple_repeat Simple_repeat 1 22 0 430 199 71 50 chr13 22559362 22559476 -79313693 + L1ME4a LINE L1 5726 5845 -276 2016 129 3 49 chr13 22559476 22559802 -79313367 + AluSp SINE Alu 2 312 -1 430 199 71 50 chr13 22559802 22559828 -79313341 + L1ME4a LINE L1 5845 5869 -252 316 250 71 0 chr13 22559897 22560009 -79313160 + L1ME4a LINE L1 5998 6117 -4 228 314 91 58 chr13 22560318 22560439 -79312730 - L2 LINE L2 0 3272 3148 795 168 0 0 chr13 22560592 22560729 -79312440 - MER3 DNA MER1_type -6 203 67 184 297 31 16 chr13 22562237 22562301 -79310868 - L3b LINE CR1 -226 1357 1293 1911 135 7 7 chr13 22562600 22562882 -79310287 + AluJb SINE Alu 1 282 -30 406 325 70 6 chr13 22562989 22563146 -79310023 - MIR3 SINE MIR -18 190 24 2084 153 34 3 chr13 22564120 22564474 -79308695 - MLT1A1 LTR MaLR 0 365 1 996 110 7 0 chr13 22564542 22564678 -79308491 - AluSp SINE Alu -163 150 14 401 40 0 0 chr13 22564678 22564728 -79308441 - AluY SINE Alu -260 50 1 229 348 0 0 chr13 22564970 22565039 -79308130 - MIR SINE MIR -109 153 85 464 310 91 22 chr13 22566342 22566581 -79306588 + MIR SINE MIR 2 262 0 362 298 104 42 chr13 22568109 22568418 -79304751 - L2 LINE L2 -844 2470 2143 546 302 146 62 chr13 22568770 22568938 -79304231 + L2 LINE L2 1947 2099 -1215 2085 147 3 0 chr13 22568938 22569231 -79303938 - AluSx SINE Alu -16 296 3 546 302 146 62 chr13 22569231 22569728 -79303441 + L2 LINE L2 2099 2668 -646 395 350 68 39 chr13 22569759 22570070 -79303099 + L2 LINE L2 2933 3252 -61 354 362 87 0 chr13 22571642 22571769 -79301400 + L2 LINE L2 3122 3259 -13 234 130 74 0 chr13 22572192 22572246 -79300923 - MLT2B1 LTR ERVL 0 520 463 349 344 86 16 chr13 22572485 22572613 -79300556 + L2 LINE L2 3123 3259 -13 303 255 57 57 chr13 22572689 22572795 -79300374 + L2 LINE L2 3192 3297 -16 25 0 0 0 chr13 22574514 22574539 -79298630 + AT_rich Low_complexity Low_complexity 1 25 0 964 110 0 0 chr13 22574569 22574696 -79298473 + FLAM_C SINE Alu 1 127 -16 354 323 126 6 chr13 22575735 22575902 -79297267 + MER5A DNA MER1_type 3 189 0 273 297 53 90 chr13 22575921 22576187 -79296982 + L2 LINE L2 3004 3259 -13 186 71 0 0 chr13 22577486 22577514 -79295655 + (TG)n Simple_repeat Simple_repeat 1 28 0 2154 104 0 7 chr13 22577938 22578235 -79294934 + AluSx SINE Alu 1 295 -17 185 366 47 91 chr13 22579581 22579920 -79293249 + L2 LINE L2 2946 3269 -3 21 0 0 0 chr13 22580734 22580755 -79292414 + AT_rich Low_complexity Low_complexity 1 21 0 187 250 0 0 chr13 22581040 22581076 -79292093 + L2 LINE L2 3222 3257 -15 3495 158 46 3 chr13 22582815 22583429 -79289740 - LTR48B LTR ERV1 -4 640 1 241 298 0 0 chr13 22583527 22583584 -79289585 - L2 LINE L2 0 3313 3257 233 382 10 10 chr13 22584195 22584297 -79288872 - MIR SINE MIR -149 113 12 256 291 130 72 chr13 22584916 22585277 -79287892 - L3 LINE CR1 -45 1532 1151 21 0 0 0 chr13 22587435 22587456 -79285713 + AT_rich Low_complexity Low_complexity 1 21 0 276 256 204 64 chr13 22588063 22588235 -79284934 + MIR SINE MIR 6 201 -61 4498 104 2 3 chr13 22589383 22590024 -79283145 + L1PA15 LINE L1 5526 6165 0 269 283 0 47 chr13 22591451 22591557 -79281612 + A-rich Low_complexity Low_complexity 4 104 0 461 71 14 0 chr13 22591585 22591655 -79281514 + (CA)n Simple_repeat Simple_repeat 2 72 0 1850 150 14 7 chr13 22592226 22592520 -79280649 - AluJb SINE Alu -16 296 1 195 42 0 0 chr13 22592650 22592674 -79280495 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 423 252 61 0 chr13 22593112 22593243 -79279926 - L1ME1 LINE L1 -2 6164 6026 1792 212 62 3 chr13 22593311 22593835 -79279334 - L1ME1 LINE L1 -530 5636 5058 2214 109 0 10 chr13 22593835 22594138 -79279031 + AluSx SINE Alu 1 300 -12 1792 212 62 3 chr13 22594138 22594355 -79278814 - L1ME1 LINE L1 -1108 5058 4855 345 277 37 0 chr13 22594354 22594479 -79278690 - L1ME1 LINE L1 -2273 3873 3729 * 791 197 0 0 chr13 22595781 22595928 -79277241 - MLT1A1 LTR MaLR -48 317 171 2553 61 0 0 chr13 22596278 22596588 -79276581 - AluSx SINE Alu -2 310 1 2429 87 0 6 chr13 22597574 22597885 -79275284 - AluSc SINE Alu 0 309 1 910 229 94 0 chr13 22598041 22598329 -79274840 + L1MC4 LINE L1 7728 8042 0 2252 125 117 5 chr13 22598366 22598751 -79274418 + MSTA LTR MaLR 1 428 0 256 180 0 0 chr13 22599674 22599718 -79273451 - MER58A DNA MER1_type 0 224 181 496 220 85 0 chr13 22599718 22599836 -79273333 - MER58A DNA MER1_type 0 128 1 619 184 18 0 chr13 22600172 22600286 -79272883 - Tigger3(Golem) DNA MER2_type 0 3034 2919 401 235 0 0 chr13 22600292 22600373 -79272796 - Tigger3(Golem) DNA MER2_type -2948 81 1 702 101 0 18 chr13 22600922 22601031 -79272138 - L1PA8 LINE L1 0 6172 6066 307 326 0 0 chr13 22601480 22601569 -79271600 - L1MC4 LINE L1 -1339 6703 6615 225 154 0 0 chr13 22601569 22601608 -79271561 + (CA)n Simple_repeat Simple_repeat 1 39 0 441 0 0 0 chr13 22601980 22602029 -79271140 + (CA)n Simple_repeat Simple_repeat 2 50 0 180 163 0 0 chr13 22602092 22602135 -79271034 + A-rich Low_complexity Low_complexity 5 47 0 182 274 20 0 chr13 22602740 22602791 -79270378 + MIR SINE MIR 95 146 -62 1602 169 30 0 chr13 22605346 22605612 -79267557 + AluJo SINE Alu 1 274 -38 451 259 89 44 chr13 22605712 22605870 -79267299 + MIR SINE MIR 90 254 -8 200 86 29 0 chr13 22605875 22605910 -79267259 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 257 247 37 0 chr13 22606337 22606418 -79266751 - MER58C DNA MER1_type -10 205 122 380 253 19 2 chr13 22606440 22606582 -79266587 - MER58 DNA MER1_type -71 144 2 1254 182 0 4 chr13 22606591 22606816 -79266353 + MER58A DNA MER1_type 1 224 0 401 298 11 0 chr13 22607878 22607972 -79265197 + L2 LINE L2 3158 3252 -20 567 66 0 0 chr13 22607975 22608051 -79265118 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 496 363 109 11 chr13 22608258 22608624 -79264545 + L3 LINE CR1 179 580 -997 1620 203 10 13 chr13 22608979 22609290 -79263879 - AluJo SINE Alu -2 310 1 304 200 57 9 chr13 22609358 22609463 -79263706 + (TATAA)n Simple_repeat Simple_repeat 3 112 0 186 171 0 0 chr13 22609601 22609642 -79263527 + (TG)n Simple_repeat Simple_repeat 1 41 0 4960 151 159 0 chr13 22609987 22610867 -79262302 + LTR28 LTR ERV1 1 1020 0 369 0 0 0 chr13 22611135 22611176 -79261993 + (TG)n Simple_repeat Simple_repeat 2 42 0 3301 197 49 48 chr13 22612265 22612646 -79260523 + L1MB3 LINE L1 4344 4723 -1460 853 159 0 36 chr13 22612646 22612784 -79260385 + FLAM_C SINE Alu 1 133 0 3301 197 49 48 chr13 22612784 22613757 -79259412 + L1MB3 LINE L1 4723 5706 -477 994 103 0 109 chr13 22613758 22613978 -79259191 - AluSg/x SINE Alu 0 329 129 21 36 0 0 chr13 22613982 22614010 -79259159 + AT_rich Low_complexity Low_complexity 1 28 0 1042 63 8 0 chr13 22614014 22614140 -79259029 + AluSg SINE Alu 1 127 -183 2053 169 16 0 chr13 22614140 22614507 -79258662 + L1MB3 LINE L1 5702 6074 -109 1025 236 24 11 chr13 22614519 22614700 -79258469 - L1MC4 LINE L1 -538 7504 7327 2004 164 0 0 chr13 22614700 22615010 -79258159 - AluSx SINE Alu -2 310 1 1025 236 24 11 chr13 22615010 22615279 -79257890 - L1MC4 LINE L1 -715 7327 6855 338 89 0 54 chr13 22615345 22615401 -79257768 - L1MB3 LINE L1 -219 5964 5912 189 0 0 0 chr13 22615447 22615468 -79257701 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 369 0 0 0 chr13 22615467 22615508 -79257661 + (TG)n Simple_repeat Simple_repeat 2 42 0 1688 168 3 7 chr13 22615508 22615793 -79257376 - AluJo SINE Alu -28 284 1 335 273 0 0 chr13 22615875 22615952 -79257217 + Charlie8 DNA MER1_type 2336 2412 -5 807 272 99 23 chr13 22616511 22617053 -79256116 - L1ME LINE L1 -391 5771 5181 476 237 20 40 chr13 22617062 22617214 -79255955 + L2 LINE L2 3165 3313 0 17117 171 45 14 chr13 22617248 22618633 -79254536 - L1PBa LINE L1 -1538 5324 3983 362 21 0 21 chr13 22618633 22618681 -79254488 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 17117 171 45 14 chr13 22618681 22620640 -79252529 - L1PBa LINE L1 -2879 3983 2086 2131 94 14 3 chr13 22620640 22620928 -79252241 + AluSq SINE Alu 1 291 -22 17117 171 45 14 chr13 22620928 22622747 -79250422 - L1PBa LINE L1 -4776 2086 1 687 167 40 16 chr13 22623199 22623325 -79249844 + FLAM_C SINE Alu 5 133 0 2454 208 58 21 chr13 22623402 22623973 -79249196 - L1MD3 LINE L1 0 7995 7404 274 263 13 13 chr13 22623973 22624049 -79249120 - MLT1F1 LTR MaLR -442 125 50 239 91 0 0 chr13 22624076 22624109 -79249060 - L1MD3 LINE L1 -879 7116 7084 2435 95 0 0 chr13 22624115 22624420 -79248749 - AluSq SINE Alu -8 305 1 23 54 0 0 chr13 22624832 22624869 -79248300 + AT_rich Low_complexity Low_complexity 1 37 0 2347 102 0 9 chr13 22625463 22625778 -79247391 - AluSq SINE Alu -1 312 1 703 283 19 38 chr13 22626194 22626352 -79246817 - MIR SINE MIR 0 262 107 2457 133 11 22 chr13 22626352 22626720 -79246449 - THE1B LTR MaLR 0 364 1 703 283 19 38 chr13 22626720 22626773 -79246396 - MIR SINE MIR -155 107 55 2160 151 6 12 chr13 22627545 22627890 -79245279 + MLT1A1 LTR MaLR 1 343 -22 430 98 0 16 chr13 22627930 22627991 -79245178 - MADE1 DNA Mariner -20 60 1 214 213 13 13 chr13 22630075 22630150 -79243019 + CT-rich Low_complexity Low_complexity 2 76 0 1522 116 3 99 chr13 22630420 22630713 -79242456 - AluSx SINE Alu 0 312 48 26 50 0 0 chr13 22631111 22631151 -79242018 + AT_rich Low_complexity Low_complexity 1 40 0 2400 66 0 0 chr13 22631700 22631988 -79241181 + AluY SINE Alu 24 311 0 261 295 9 38 chr13 22632744 22632849 -79240320 - MLT1L LTR MaLR -164 451 350 264 182 26 65 chr13 22632897 22632927 -79240242 - MLT1J2 LTR MaLR -317 133 103 4204 165 48 69 chr13 22632927 22633431 -79239738 - MER21A LTR ERV1 0 931 418 2058 112 4 0 chr13 22633431 22633733 -79239436 - AluSx SINE Alu 0 308 6 4204 165 48 69 chr13 22633733 22633744 -79239425 - MER21A LTR ERV1 -513 418 408 219 36 0 0 chr13 22633744 22633772 -79239397 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4204 165 48 69 chr13 22633772 22634205 -79238964 - MER21A LTR ERV1 -523 408 1 264 182 26 65 chr13 22634205 22634251 -79238918 - MLT1J2 LTR MaLR -347 103 60 276 268 0 12 chr13 22634644 22634726 -79238443 - MLT1L LTR MaLR -2 613 533 260 268 181 39 chr13 22635355 22635482 -79237687 + MIR3 SINE MIR 36 180 -28 740 173 100 20 chr13 22636360 22636510 -79236659 - MER20 DNA MER1_type -23 196 35 282 180 0 0 chr13 22637070 22637131 -79236038 + GA-rich Low_complexity Low_complexity 2 62 0 209 200 20 0 chr13 22637727 22637777 -79235392 + G-rich Low_complexity Low_complexity 4 54 0 21 0 0 0 chr13 22637827 22637848 -79235321 + GC_rich Low_complexity Low_complexity 1 21 0 2253 70 0 7 chr13 22642135 22642453 -79230716 + AluY SINE Alu 1 316 0 835 206 106 12 chr13 22644436 22644606 -79228563 - MER5A DNA MER1_type 0 189 4 223 113 75 0 chr13 22644831 22644884 -79228285 + (TA)n Simple_repeat Simple_repeat 1 57 0 2018 133 17 0 chr13 22645400 22645693 -79227476 + AluSx SINE Alu 2 299 -13 18323 33 4 1 chr13 22645842 22648705 -79224464 - L1PA4 LINE L1 0 6155 3304 2163 130 0 0 chr13 22648879 22649178 -79223991 - AluSq SINE Alu -14 299 1 326 305 54 24 chr13 22649201 22649368 -79223801 - MER5A DNA MER1_type -15 174 3 496 242 12 50 chr13 22650579 22650740 -79222429 + MER103 DNA DNA 1 155 -11 2145 102 27 14 chr13 22651583 22651876 -79221293 + AluSg SINE Alu 1 297 -13 399 196 152 0 chr13 22652421 22652533 -79220636 - MER103 DNA DNA -33 133 5 349 316 128 30 chr13 22652653 22652786 -79220383 - L2 LINE L2 -18 3254 3109 1193 280 78 39 chr13 22652905 22653391 -79219778 + LTR33A LTR ERVL 19 523 0 2268 114 0 0 chr13 22653819 22654117 -79219052 - AluSq SINE Alu -15 298 1 206 350 120 10 chr13 22654206 22654406 -79218763 - L2 LINE L2 -638 2676 2455 622 199 152 18 chr13 22655152 22655323 -79217846 - MER57A LTR ERV1 -4 399 206 24 77 0 0 chr13 22655324 22655376 -79217793 + AT_rich Low_complexity Low_complexity 1 52 0 2237 74 60 0 chr13 22656447 22656732 -79216437 - AluSp SINE Alu -11 302 1 306 279 171 66 chr13 22656749 22657176 -79215993 - L2 LINE L2 0 3313 2842 2003 153 3 7 chr13 22657516 22657824 -79215345 + AluJb SINE Alu 1 307 -5 304 270 112 0 chr13 22657898 22657987 -79215182 + L2 LINE L2 3134 3232 -40 223 388 29 15 chr13 22658807 22659013 -79214156 - L2 LINE L2 -874 2440 2232 211 176 0 0 chr13 22659428 22659462 -79213707 + polypyrimidine Low_complexity Low_complexity 3 36 0 255 288 128 71 chr13 22660103 22660329 -79212840 + MIR SINE MIR 22 260 -2 328 259 12 12 chr13 22660344 22660425 -79212744 - L2 LINE L2 -13 3300 3220 285 293 113 82 chr13 22661745 22662177 -79210992 + L2 LINE L2 2632 3090 -182 1875 128 7 38 chr13 22663063 22663352 -79209817 + AluSx SINE Alu 14 293 -19 233 255 167 59 chr13 22663902 22664004 -79209165 + L2 LINE L2 3201 3313 0 469 176 0 0 chr13 22664065 22664139 -79209030 - MER45A DNA AcHobo 0 178 105 1162 173 14 34 chr13 22664139 22664347 -79208822 + AluJo SINE Alu 87 290 -22 249 118 0 0 chr13 22664347 22664381 -79208788 - MER45A DNA AcHobo -66 112 79 2042 126 10 0 chr13 22665908 22666201 -79206968 - AluSx SINE Alu -16 296 1 2507 63 0 3 chr13 22666490 22666790 -79206379 - AluY SINE Alu -12 299 1 268 369 150 6 chr13 22666797 22666957 -79206212 - MIR SINE MIR -76 186 4 2051 119 58 73 chr13 22767645 22768058 -79105111 - MLT2D LTR ERVL -6 408 2 400 288 118 26 chr13 22768065 22768371 -79104798 - MER93a LTR ERV1 -11 391 58 703 265 38 93 chr13 22768468 22768759 -79104410 - MLT1E LTR MaLR -88 505 231 1991 128 24 0 chr13 22769071 22769360 -79103809 - AluSx SINE Alu -16 296 1 1965 156 30 0 chr13 22769468 22769802 -79103367 + MSTB LTR MaLR 1 344 -82 2446 70 0 3 chr13 22772117 22772429 -79100740 - AluY SINE Alu 0 311 1 21 0 0 0 chr13 22772677 22772698 -79100471 + AT_rich Low_complexity Low_complexity 1 21 0 317 173 62 0 chr13 22772904 22772985 -79100184 - L1MB4 LINE L1 -2 6178 6093 4732 130 2 1 chr13 22773007 22773905 -79099264 - L1MA4 LINE L1 -289 6011 5113 3335 173 30 7 chr13 22773910 22774639 -79098530 + L1MA4 LINE L1 4336 5081 -1065 242 346 8 60 chr13 22774712 22774845 -79098324 + MIR SINE MIR 49 174 -88 31 26 0 0 chr13 22776168 22776206 -79096963 + AT_rich Low_complexity Low_complexity 1 38 0 307 71 0 0 chr13 22776208 22776250 -79096919 - Alu SINE Alu -8 292 251 2043 105 4 0 chr13 22776250 22776526 -79096643 - AluSx SINE Alu -35 277 1 196 238 0 0 chr13 22776643 22776685 -79096484 + MIR SINE MIR 103 144 -64 2341 70 6 22 chr13 22776971 22777287 -79095882 - AluY SINE Alu 0 311 1 694 251 17 17 chr13 22779883 22780058 -79093111 + MIR SINE MIR 88 262 0 226 272 44 44 chr13 22780766 22780880 -79092289 - LTR33 LTR ERVL -384 137 24 2389 85 0 3 chr13 22780978 22781285 -79091884 - AluSx SINE Alu -6 306 1 211 133 67 0 chr13 22782805 22782878 -79090291 + A-rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr13 22783715 22783736 -79089433 + AT_rich Low_complexity Low_complexity 1 21 0 38401 69 7 4 chr13 22783741 22789876 -79083293 - L1PA5 LINE L1 -3 6151 2 2690 156 25 18 chr13 22790512 22791173 -79081996 + MER72 LTR ERV1 1 722 0 360 269 78 60 chr13 22794313 22794581 -79078588 + MARNA DNA Mariner 287 559 -27 246 314 69 29 chr13 22794715 22794817 -79078352 + MIR SINE MIR 26 131 -77 935 188 30 10 chr13 22796097 22796294 -79076875 - LTR40a LTR ERVL -1 518 318 332 331 39 0 chr13 22796288 22796466 -79076703 + MLT1L LTR MaLR 431 615 0 * 942 309 140 50 chr13 22796469 22797217 -79075952 - L2 LINE L2 -676 2638 1823 345 381 67 3 chr13 22797613 22797973 -79075196 + L2 LINE L2 1713 2095 -1219 321 303 28 67 chr13 22799942 22800120 -79073049 - L2 LINE L2 -420 2894 2724 740 234 126 14 chr13 22801116 22801338 -79071831 - MIR SINE MIR -10 252 6 2502 272 140 20 chr13 22801738 22802666 -79070503 + L2 LINE L2 1264 2302 -1012 275 250 0 24 chr13 22802745 22802829 -79070340 + MLT1L LTR MaLR 2 83 -532 1117 152 29 3 chr13 22802859 22803194 -79069975 - MSTB1 LTR MaLR 0 432 1 774 262 88 25 chr13 22803197 22803639 -79069530 + MLT1L LTR MaLR 124 593 -22 410 196 10 0 chr13 22803937 22804039 -79069130 + CT-rich Low_complexity Low_complexity 3 105 0 788 308 97 31 chr13 22804296 22804896 -79068273 - L2 LINE L2 -2 3311 2672 742 216 66 62 chr13 22804897 22805138 -79068031 - MLT1D LTR MaLR -261 244 3 222 37 0 0 chr13 22805153 22805180 -79067989 + (GA)n Simple_repeat Simple_repeat 1 27 0 1695 186 3 32 chr13 22805233 22805545 -79067624 - AluJb SINE Alu -9 303 1 606 243 44 0 chr13 22805745 22805881 -79067288 + L2 LINE L2 3172 3313 0 1608 188 33 23 chr13 22806573 22806877 -79066292 + AluJo SINE Alu 3 309 -3 261 194 14 0 chr13 22807645 22807717 -79065452 + L1MC2 LINE L1 6261 7779 -6 24 32 0 0 chr13 22808144 22808175 -79064994 + AT_rich Low_complexity Low_complexity 1 31 0 375 242 50 72 chr13 22808579 22808759 -79064410 + L1ME4a LINE L1 5219 5387 -873 2301 112 0 0 chr13 22808759 22809062 -79064107 - AluSx SINE Alu -9 303 1 375 242 50 72 chr13 22809062 22809174 -79063995 + L1ME4a LINE L1 5387 5500 -760 227 252 38 30 chr13 22809470 22809601 -79063568 + L1ME4a LINE L1 5813 5944 -177 183 268 169 0 chr13 22810778 22810849 -79062320 - MIR SINE MIR -91 117 35 22 0 0 0 chr13 22811272 22811294 -79061875 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 22811774 22811801 -79061368 + AT_rich Low_complexity Low_complexity 1 27 0 181 222 0 0 chr13 22812397 22812433 -79060736 + L2 LINE L2 3218 3253 -19 504 206 21 7 chr13 22812437 22812578 -79060591 + GA-rich Low_complexity Low_complexity 3 145 0 2345 107 0 3 chr13 22813417 22813726 -79059443 + AluSx SINE Alu 1 308 -4 2011 127 23 13 chr13 22813879 22814187 -79058982 - AluSx SINE Alu -1 311 1 632 259 63 44 chr13 22814188 22814393 -79058776 - MIR SINE MIR -1 261 53 409 292 65 18 chr13 22815701 22815869 -79057300 + MIR SINE MIR 73 248 -14 186 295 49 16 chr13 22816780 22816841 -79056328 - L2 LINE L2 -12 3301 3239 376 303 74 55 chr13 22817625 22817935 -79055234 - LTR33 LTR ERVL 0 521 206 280 267 40 0 chr13 22817966 22818067 -79055102 - LTR33 LTR ERVL -413 108 4 248 249 56 129 chr13 22818121 22818354 -79054815 + L1M4 LINE L1 8 223 -6319 5217 233 49 23 chr13 22818629 22822341 -79050828 + L1M4 LINE L1 539 4428 -2216 314 303 25 76 chr13 22822360 22822558 -79050611 - MIR SINE MIR -14 248 61 210 91 0 0 chr13 22823632 22823665 -79049504 + (TC)n Simple_repeat Simple_repeat 1 33 0 2026 114 23 16 chr13 22823665 22823971 -79049198 - AluSc SINE Alu -1 308 1 23 0 0 0 chr13 22825288 22825311 -79047858 + AT_rich Low_complexity Low_complexity 1 23 0 2366 77 0 3 chr13 22825831 22826128 -79047041 - AluSp SINE Alu -17 296 1 862 201 53 46 chr13 22826586 22826746 -79046423 + L1MC4 LINE L1 7756 7920 -122 420 20 0 0 chr13 22826746 22826795 -79046374 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 862 201 53 46 chr13 22826795 22826917 -79046252 + L1MC4 LINE L1 7920 8040 -2 421 294 127 27 chr13 22827301 22827522 -79045647 - MIR SINE MIR -17 245 3 210 309 0 0 chr13 22827551 22827606 -79045563 - L2 LINE L2 -9 3263 3209 460 319 38 6 chr13 22827817 22827974 -79045195 - MIR3 SINE MIR -9 199 38 255 114 0 0 chr13 22828110 22828154 -79045015 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 33 0 0 chr13 22828675 22828705 -79044464 + (TG)n Simple_repeat Simple_repeat 1 30 0 1093 220 95 79 chr13 22829637 22830153 -79043016 - MER39 LTR ERV1 0 707 1 279 295 116 23 chr13 22830724 22830853 -79042316 - MIR3 SINE MIR -37 171 31 234 234 31 0 chr13 22831820 22831884 -79041285 + L1ME3A LINE L1 5929 5994 -176 872 148 7 7 chr13 22832141 22832276 -79040893 + FRAM SINE Alu 11 145 -31 21 0 0 0 chr13 22832439 22832460 -79040709 + AT_rich Low_complexity Low_complexity 1 21 0 2016 219 86 2 chr13 22833485 22833951 -79039218 + MLT1D LTR MaLR 1 505 0 715 209 0 0 chr13 22835124 22835258 -79037911 - FLAM_C SINE Alu -9 134 1 302 238 299 7 chr13 22835630 22835777 -79037392 + MIR3 SINE MIR 13 202 -6 2334 141 20 66 chr13 22837139 22837627 -79035542 - MER31B LTR ERV1 0 466 1 2411 82 0 3 chr13 22838027 22838332 -79034837 + AluSx SINE Alu 1 304 -8 210 266 97 0 chr13 22838381 22838475 -79034694 + MIR SINE MIR 50 154 -108 235 214 0 54 chr13 22838885 22838941 -79034228 + L2 LINE L2 3220 3272 0 24 0 0 0 chr13 22839092 22839116 -79034053 + AT_rich Low_complexity Low_complexity 1 24 0 1395 167 0 0 chr13 22839125 22839341 -79033828 - AluJb SINE Alu -10 302 87 840 255 111 15 chr13 22839421 22839692 -79033477 - L2 LINE L2 -4 3309 3013 505 294 92 14 chr13 22839932 22840150 -79033019 - L2 LINE L2 -345 2969 2735 390 21 0 0 chr13 22840158 22840205 -79032964 + (TG)n Simple_repeat Simple_repeat 2 48 0 1793 228 79 45 chr13 22840205 22840736 -79032433 - MLT2B3 LTR ERVL -5 549 1 2771 166 2 44 chr13 22840737 22841127 -79032042 - L1MB3 LINE L1 -10 6173 5813 411 43 0 43 chr13 22841127 22841196 -79031973 + (TA)n Simple_repeat Simple_repeat 1 66 0 2771 166 2 44 chr13 22841196 22841373 -79031796 - L1MB3 LINE L1 -370 5813 5630 534 250 323 0 chr13 22841373 22841605 -79031564 - L2 LINE L2 -563 2751 2445 183 42 0 0 chr13 22841814 22841838 -79031331 + (TG)n Simple_repeat Simple_repeat 2 25 0 356 260 208 0 chr13 22842226 22842380 -79030789 - MIR SINE MIR -7 255 70 209 264 56 28 chr13 22843803 22843875 -79029294 + MIR3 SINE MIR 81 154 -54 240 330 93 35 chr13 22843902 22844299 -79028870 - LTR67 LTR ERVL -3 554 135 672 246 7 115 chr13 22845395 22845683 -79027486 + L2 LINE L2 3055 3311 -2 264 30 0 0 chr13 22846140 22846173 -79026996 + (TG)n Simple_repeat Simple_repeat 2 34 0 488 269 81 75 chr13 22846740 22847100 -79026069 - HAL1 LINE L1 -863 1644 1283 600 291 118 62 chr13 22847155 22847801 -79025368 - HAL1 LINE L1 -1778 729 48 303 209 0 45 chr13 22848117 22848184 -79024985 - L2 LINE L2 0 3313 3250 859 329 90 26 chr13 22848634 22848705 -79024464 + L2 LINE L2 2365 2430 -842 2381 174 26 9 chr13 22848705 22849160 -79024009 - MLT1C LTR MaLR -4 463 1 859 329 90 26 chr13 22849160 22849736 -79023433 + L2 LINE L2 2430 3051 -221 1281 239 151 36 chr13 22849741 22850185 -79022984 + MLT1D LTR MaLR 5 499 -6 227 310 76 44 chr13 22850236 22850394 -79022775 + L2 LINE L2 3083 3245 -27 658 290 35 66 chr13 22851097 22851414 -79021755 + MLT1K LTR MaLR 167 473 -115 253 238 170 61 chr13 22851589 22851736 -79021433 + MLT1J LTR MaLR 99 261 -250 214 243 14 40 chr13 22852949 22853023 -79020146 + (TG)n Simple_repeat Simple_repeat 2 73 0 300 233 0 0 chr13 22853044 22853117 -79020052 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 33 43 0 0 chr13 22853144 22853191 -79019978 + AT_rich Low_complexity Low_complexity 1 47 0 292 301 9 26 chr13 22853391 22853504 -79019665 - MIR SINE MIR -49 159 48 1233 160 62 4 chr13 22854753 22854997 -79018172 - L1MB1 LINE L1 -1 6167 5910 3383 188 20 4 chr13 22854999 22855685 -79017484 + L1 LINE L1 4448 5144 -1002 14771 199 27 37 chr13 22855938 22859087 -79014082 - L1MA5 LINE L1 -4 7358 4328 1471 200 46 3 chr13 22859087 22859372 -79013797 - AluJo SINE Alu -5 297 1 14771 199 27 37 chr13 22859372 22860897 -79012272 - L1MA5 LINE L1 -3034 4328 2789 2171 253 38 52 chr13 22860884 22862257 -79010912 - L1MA5 LINE L1 -4915 2294 1 * 24 0 0 0 chr13 22862939 22862963 -79010206 + AT_rich Low_complexity Low_complexity 1 24 0 1996 70 3 101 chr13 22863143 22863447 -79009722 + AluY SINE Alu 1 272 -39 180 0 0 0 chr13 22863447 22863467 -79009702 + (CA)n Simple_repeat Simple_repeat 1 20 0 1996 70 3 101 chr13 22863467 22863490 -79009679 + AluY SINE Alu 272 296 -15 490 261 73 0 chr13 22864474 22864639 -79008530 - HAL1 LINE L1 -353 2154 1978 2704 271 90 28 chr13 22864643 22865786 -79007383 - HAL1 LINE L1 -1245 1262 49 521 258 48 0 chr13 22865865 22865989 -79007180 + MER91B DNA MER1_type 1 130 -60 236 323 32 21 chr13 22866006 22866099 -79007070 + MER91B DNA MER1_type 90 183 -7 922 136 4 140 chr13 22867244 22867472 -79005697 + L1PA16 LINE L1 5961 6157 -9 6854 62 1 0 chr13 22867642 22868512 -79004657 + L1PA6 LINE L1 5282 6152 -2 606 275 130 5 chr13 22869071 22869271 -79003898 + MIR SINE MIR 14 238 -24 22 56 0 0 chr13 22869389 22869425 -79003744 + AT_rich Low_complexity Low_complexity 1 36 0 2311 109 0 0 chr13 22869433 22869737 -79003432 + AluSq SINE Alu 1 304 -9 230 250 40 81 chr13 22870167 22870291 -79002878 + HAL1b LINE L1 589 707 -641 404 315 149 41 chr13 22870470 22870860 -79002309 + MLT1L LTR MaLR 41 472 -143 385 321 86 45 chr13 22870874 22871117 -79002052 + L1M4 LINE L1 2787 3039 -3107 4536 35 0 0 chr13 22871462 22871999 -79001170 + L1PA4 LINE L1 5611 6147 -8 400 257 75 35 chr13 22872142 22872368 -79000801 + L1ME4a LINE L1 5664 5898 -223 405 0 0 0 chr13 22872685 22872730 -79000439 + (TG)n Simple_repeat Simple_repeat 2 46 0 2399 66 7 0 chr13 22873373 22873662 -78999507 - AluYa5 SINE Alu -7 304 14 2328 87 0 0 chr13 22874841 22875128 -78998041 + AluSc SINE Alu 1 287 -22 287 313 64 21 chr13 22875835 22875983 -78997186 - MIR SINE MIR -63 145 2 233 168 9 224 chr13 22876106 22876213 -78996956 - MIR SINE MIR -1 261 178 255 271 57 41 chr13 22876412 22876534 -78996635 - MIR SINE MIR -137 125 2 225 294 55 84 chr13 22877703 22877978 -78995191 - MLT1L LTR MaLR -182 433 167 1261 178 47 34 chr13 22878628 22878948 -78994221 + MER33 DNA MER1_type 1 324 0 211 194 0 0 chr13 22879120 22879156 -78994013 + (ATG)n Simple_repeat Simple_repeat 3 38 0 12370 231 20 21 chr13 22880786 22885013 -78988156 + L1PA15 LINE L1 1081 5309 -1488 5769 98 39 3 chr13 22885043 22886529 -78986640 + L1PA15 LINE L1 5280 6811 -5 237 232 0 18 chr13 22886919 22886975 -78986194 + G-rich Low_complexity Low_complexity 3 57 0 217 347 174 0 chr13 22890337 22890435 -78982734 + L2 LINE L2 3150 3264 -8 2107 129 10 0 chr13 22890696 22891005 -78982164 - AluSx SINE Alu 0 312 1 509 311 0 0 chr13 22892334 22892456 -78980713 - L2 LINE L2 -1 3271 3150 809 197 111 5 chr13 22892463 22892661 -78980508 - MER58A DNA MER1_type -5 219 1 445 343 106 35 chr13 22892853 22893279 -78979890 - L2 LINE L2 -337 2977 2522 295 21 64 0 chr13 22894249 22894296 -78978873 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6286 23 8 10 chr13 22894296 22895084 -78978085 - L1PA3 LINE L1 -16 6139 5354 22 56 0 0 chr13 22896344 22896380 -78976789 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr13 22896579 22896599 -78976570 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1123 256 34 21 chr13 22896850 22897268 -78975901 - Charlie7 DNA MER1_type -461 2151 1729 571 261 40 27 chr13 22897272 22897494 -78975675 - Charlie7 DNA MER1_type -2091 521 297 3329 94 13 0 chr13 22897755 22898214 -78974955 - L1PA11 LINE L1 0 6174 5710 294 233 0 68 chr13 22899506 22899609 -78973560 - MIR SINE MIR -56 206 111 1840 135 40 4 chr13 22899627 22899952 -78973217 - AluSx SINE Alu 0 335 1 1066 205 68 34 chr13 22900347 22900694 -78972475 - MSTD LTR MaLR 0 396 1 1421 217 98 61 chr13 22900696 22901221 -78971948 + MLT1F1 LTR MaLR 25 567 0 199 185 358 0 chr13 22901577 22901658 -78971511 + MIR SINE MIR 117 226 -36 260 231 0 0 chr13 22901676 22901728 -78971441 - MIR SINE MIR -60 148 97 359 185 0 0 chr13 22902868 22902933 -78970236 - U4 snRNA snRNA -80 65 1 325 343 42 30 chr13 22903131 22903367 -78969802 + L2 LINE L2 2518 2756 -558 532 278 64 71 chr13 22903616 22903911 -78969258 + L2 LINE L2 3021 3313 0 262 379 85 26 chr13 22904244 22904516 -78968653 + L2 LINE L2 2981 3268 -4 1144 70 6 0 chr13 22905456 22905612 -78967557 + L1PA13 LINE L1 5564 5720 -454 479 93 0 103 chr13 22905612 22905717 -78967452 + L1PA13 LINE L1 6064 6159 -4 808 320 128 43 chr13 22907259 22908021 -78965148 + L2 LINE L2 2329 3173 -99 1622 171 45 7 chr13 22908021 22908313 -78964856 + AluJb SINE Alu 1 303 -9 808 320 128 43 chr13 22908313 22908423 -78964746 + L2 LINE L2 3173 3272 0 219 204 0 0 chr13 22909207 22909256 -78963913 + CT-rich Low_complexity Low_complexity 4 52 0 200 233 0 0 chr13 22909258 22909301 -78963868 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 251 320 21 31 chr13 22909316 22909413 -78963756 - L2 LINE L2 -50 3263 3168 227 368 26 0 chr13 22909536 22909612 -78963557 - L2 LINE L2 -204 3068 2991 260 67 0 67 chr13 22909854 22909914 -78963255 + (CA)n Simple_repeat Simple_repeat 2 57 0 279 0 0 0 chr13 22910343 22910374 -78962795 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 322 308 83 30 chr13 22912663 22912832 -78960337 + MIR SINE MIR 56 233 -29 1546 220 37 135 chr13 22913217 22914238 -78958931 - L1MC5 LINE L1 -423 7818 6898 24 53 0 0 chr13 22914560 22914598 -78958571 + AT_rich Low_complexity Low_complexity 1 38 0 1334 247 146 2 chr13 22914766 22915244 -78957925 - L1MC5 LINE L1 -1879 6209 5663 437 309 80 41 chr13 22915507 22916095 -78957074 - L1MC5 LINE L1 -1094 5332 4722 452 287 87 52 chr13 22916096 22916615 -78956554 - L1MC5 LINE L1 -5032 1394 858 619 231 81 6 chr13 22916850 22917010 -78956159 - MLT1D LTR MaLR 0 505 334 609 190 32 38 chr13 22917044 22917202 -78955967 + MER53 DNA DNA 28 184 -5 * 1461 211 12 36 chr13 22917185 22917521 -78955648 - MLT1D LTR MaLR -177 328 1 885 172 61 22 chr13 22917534 22917714 -78955455 + MER53 DNA DNA 1 187 -2 3417 133 2 4 chr13 22919311 22919828 -78953341 + L1MA5A LINE L1 5508 6023 -274 1407 122 39 24 chr13 22919852 22919936 -78953233 + L1MC3 LINE L1 7527 7608 -177 2042 131 3 7 chr13 22919936 22920270 -78952899 + AluSx SINE Alu 1 333 0 1407 122 39 24 chr13 22920270 22920438 -78952731 + L1MC3 LINE L1 7608 7784 -1 2024 129 0 3 chr13 22920860 22921146 -78952023 - AluSx SINE Alu -15 297 13 455 258 18 60 chr13 22921202 22921369 -78951800 - L1MC5 LINE L1 -50 7911 7752 204 307 166 57 chr13 22921394 22921677 -78951492 - L2 LINE L2 -15 3298 2985 8158 15 0 0 chr13 22921898 22923141 -78950028 - L1HS LINE L1 0 6155 4913 3703 56 6 0 chr13 22925332 22925800 -78947369 - L1P LINE L1 -3813 2333 1863 2652 98 3 3 chr13 22925797 22926173 -78946996 - L1P LINE L1 -4759 1387 1012 * 7716 45 8 2 chr13 22926173 22927172 -78945997 + L1PA5 LINE L1 5146 6150 -4 2267 109 3 3 chr13 22927660 22927973 -78945196 + AluSq SINE Alu 1 313 0 1969 148 26 3 chr13 22928919 22929224 -78943945 + AluSx SINE Alu 1 312 0 523 248 86 40 chr13 22929419 22929554 -78943615 + MIR SINE MIR 53 201 -61 2433 100 0 0 chr13 22929554 22929864 -78943305 + AluSg SINE Alu 1 310 0 523 248 86 40 chr13 22929864 22929926 -78943243 + MIR SINE MIR 201 259 -3 251 135 0 96 chr13 22933197 22933249 -78939920 + L2 LINE L2 2709 2755 -559 297 325 60 13 chr13 22933339 22933490 -78939679 + MIR SINE MIR 48 205 -57 298 286 136 69 chr13 22933569 22933974 -78939195 - L2 LINE L2 -50 3263 2832 580 210 81 16 chr13 22934069 22934193 -78938976 - FLAM_C SINE Alu 0 133 2 2270 164 125 74 chr13 22934920 22934957 -78938212 - MLT2B2 LTR ERVL 0 515 481 432 0 0 0 chr13 22934957 22935005 -78938164 + (GA)n Simple_repeat Simple_repeat 1 48 0 2270 164 125 74 chr13 22935005 22935455 -78937714 - MLT2B2 LTR ERVL -34 481 3 3190 118 7 0 chr13 22935957 22936382 -78936787 - MSTA LTR MaLR 0 428 1 190 383 78 8 chr13 22936715 22936843 -78936326 - L2 LINE L2 -43 3229 3093 243 140 0 0 chr13 22938616 22938666 -78934503 + (CA)n Simple_repeat Simple_repeat 2 51 0 32 43 0 0 chr13 22939870 22939916 -78933253 + AT_rich Low_complexity Low_complexity 1 46 0 10687 25 4 1 chr13 22939919 22941879 -78931290 - L1PA3 LINE L1 0 6155 4195 322 227 0 0 chr13 22941973 22942039 -78931130 + MER113 DNA MER1_type? 456 521 0 1193 245 79 25 chr13 22942429 22942956 -78930213 + MLT2F LTR ERVL 1 601 -62 783 189 0 40 chr13 22942960 22943108 -78930061 + Tigger2 DNA MER2_type 2577 2718 0 15117 131 6 4 chr13 22943248 22945618 -78927551 - L1P LINE L1 -1038 5108 2735 1552 217 16 0 chr13 22945617 22945935 -78927234 + L1ME1 LINE L1 5840 6162 -4 * 31 112 0 0 chr13 22946545 22946688 -78926481 + AT_rich Low_complexity Low_complexity 1 143 0 383 246 17 17 chr13 22946704 22947052 -78926117 + (TA)n Simple_repeat Simple_repeat 1 348 0 229 65 0 0 chr13 22947054 22947100 -78926069 + LTR66 LTR ERVL 394 439 -171 2135 136 7 0 chr13 22948138 22948447 -78924722 - AluSx SINE Alu -1 311 1 444 317 17 17 chr13 22948559 22948739 -78924430 - MIR3 SINE MIR -11 197 18 235 366 41 41 chr13 22948845 22949017 -78924152 + MER5A DNA MER1_type 18 189 0 361 299 174 11 chr13 22949047 22949231 -78923938 + MIR SINE MIR 43 256 -6 21 0 0 0 chr13 22949348 22949369 -78923800 + AT_rich Low_complexity Low_complexity 1 21 0 1523 223 24 3 chr13 22949627 22949968 -78923201 - L1ME2 LINE L1 0 6164 5817 2515 38 0 0 chr13 22950060 22950352 -78922817 - AluY SINE Alu -19 292 1 1526 218 160 39 chr13 22950660 22951246 -78921923 + Charlie7 DNA MER1_type 65 721 -1891 582 288 209 17 chr13 22952912 22953382 -78919787 - L2 LINE L2 -5 3308 2750 1392 189 60 98 chr13 22953395 22953792 -78919377 - MLT1B LTR MaLR -8 382 1 1207 264 338 8 chr13 22953793 22954565 -78918604 - L2 LINE L2 -561 2753 1727 210 222 141 40 chr13 22954651 22954750 -78918419 + MIR SINE MIR 97 205 -57 387 296 28 0 chr13 22955012 22955120 -78918049 + MIR SINE MIR 73 183 -79 1850 222 18 22 chr13 22956268 22956844 -78916325 + LTR40a LTR ERVL 1 519 0 979 172 0 0 chr13 22956875 22957032 -78916137 + FAM SINE Alu 6 162 -23 2032 141 0 0 chr13 22957047 22957337 -78915832 + AluSx SINE Alu 1 290 -22 543 43 0 0 chr13 22957412 22957482 -78915687 + (TG)n Simple_repeat Simple_repeat 1 70 0 385 265 68 8 chr13 22957590 22957707 -78915462 + L2 LINE L2 3187 3310 -3 190 342 44 61 chr13 22957913 22958027 -78915142 + MIR3 SINE MIR 95 206 -2 2397 101 0 0 chr13 22958425 22958733 -78914436 + AluSx SINE Alu 1 308 -4 2311 127 12 0 chr13 22960986 22961308 -78911861 + L1PA16 LINE L1 5832 6157 -9 207 0 0 0 chr13 22962021 22962044 -78911125 + (TG)n Simple_repeat Simple_repeat 2 24 0 294 255 21 11 chr13 22962074 22962168 -78911001 + (TA)n Simple_repeat Simple_repeat 1 95 0 2171 128 3 0 chr13 22963269 22963574 -78909595 + AluSx SINE Alu 1 306 -6 686 227 29 29 chr13 22965550 22965755 -78907414 + MER8 DNA MER2_type 20 345 0 253 170 21 0 chr13 22966219 22966266 -78906903 - L2 LINE L2 -5 3267 3220 2150 69 0 0 chr13 22967216 22967476 -78905693 + AluSx SINE Alu 32 291 -21 1712 238 83 65 chr13 22967489 22967933 -78905236 + MER97c DNA MER1_type? 45 479 -611 1742 171 53 73 chr13 22967933 22968331 -78904838 - MLT1B LTR MaLR 0 390 1 1712 238 83 65 chr13 22968331 22968357 -78904812 + MER97c DNA MER1_type? 479 503 -587 2199 130 0 0 chr13 22968357 22968664 -78904505 + AluSx SINE Alu 1 307 -5 1712 238 83 65 chr13 22968664 22968873 -78904296 + MER97c DNA MER1_type? 503 707 -383 2115 121 30 0 chr13 22968873 22969170 -78903999 + AluSc SINE Alu 1 306 -3 1712 238 83 65 chr13 22969170 22969239 -78903930 + MER97c DNA MER1_type? 707 773 -317 526 163 0 0 chr13 22969239 22969319 -78903850 + MADE1 DNA Mariner 1 80 0 1712 238 83 65 chr13 22969319 22969388 -78903781 + MER97c DNA MER1_type? 773 880 -210 402 344 158 4 chr13 22969741 22970020 -78903149 - MER115 DNA AcHobo -287 406 85 2168 128 0 0 chr13 22970298 22970596 -78902573 - AluSx SINE Alu -14 298 1 243 0 0 0 chr13 22971792 22971819 -78901350 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5031 161 17 19 chr13 22971820 22973534 -78899635 - L1PA16 LINE L1 -177 5989 4273 182 298 140 89 chr13 22973988 22974280 -78898889 - L2 LINE L2 -1022 2292 1986 27 0 0 0 chr13 22974298 22974325 -78898844 + AT_rich Low_complexity Low_complexity 1 27 0 892 206 0 0 chr13 22974325 22974485 -78898684 + AluJo SINE Alu 1 160 -152 1869 53 109 0 chr13 22976402 22976649 -78896520 + LTR12 LTR ERV1 1 274 -440 297 303 10 0 chr13 22976653 22976752 -78896417 + LTR30 LTR ERV1 544 643 -79 1038 159 176 2 chr13 22976752 22976978 -78896191 + LTR12 LTR ERV1 73 614 -100 462 287 69 21 chr13 22977512 22977700 -78895469 + L1ME4a LINE L1 5669 5865 -256 206 234 4 34 chr13 22978746 22978812 -78894357 - MIR SINE MIR -69 139 74 404 331 18 12 chr13 22979859 22980022 -78893147 + MIR SINE MIR 73 236 -26 439 221 213 0 chr13 22980034 22980156 -78893013 - MIR SINE MIR 0 262 115 690 222 34 108 chr13 22980694 22980965 -78892204 + L1MA9 LINE L1 6039 6289 -2 * 1489 269 191 20 chr13 22980963 22982018 -78891151 - L1M4 LINE L1 -2672 3474 2239 300 288 128 0 chr13 22982280 22982405 -78890764 - L1MC4 LINE L1 -1 8041 7901 193 286 119 12 chr13 22982648 22982732 -78890437 + MER5A DNA MER1_type 54 146 -43 645 306 31 9 chr13 22982765 22982987 -78890182 - MIR SINE MIR -12 250 24 3830 172 87 56 chr13 22982999 22983824 -78889345 - MER21B LTR ERV1 -12 851 1 250 202 167 35 chr13 22984324 22984438 -78888731 + L2 LINE L2 2678 2806 -508 2004 113 0 55 chr13 22984814 22985123 -78888046 - AluSq SINE Alu -21 292 1 21 71 0 0 chr13 22985267 22985309 -78887860 + AT_rich Low_complexity Low_complexity 1 42 0 191 243 0 0 chr13 22985499 22985536 -78887633 - MER5A DNA MER1_type -102 87 51 215 227 0 0 chr13 22985576 22985620 -78887549 + MER5A DNA MER1_type 146 189 0 320 317 116 31 chr13 22986319 22986543 -78886626 - MIR SINE MIR 0 262 20 * 482 271 0 16 chr13 22986532 22986654 -78886515 + L2 LINE L2 3175 3294 -19 441 243 40 35 chr13 22986766 22986992 -78886177 + L1MEc LINE L1 2078 2304 -4092 365 271 57 57 chr13 22987053 22987193 -78885976 - MIR3 SINE MIR -67 141 2 186 339 54 54 chr13 22987264 22987745 -78885424 - L2 LINE L2 -1977 1337 857 458 276 56 56 chr13 22989355 22989551 -78883618 + MLT1J LTR MaLR 3 198 -313 780 259 137 8 chr13 22990838 22991101 -78882068 + MLT1J2 LTR MaLR 117 413 -37 568 293 6 6 chr13 22992138 22992302 -78880867 + MIR SINE MIR 33 196 -66 214 245 57 0 chr13 22993084 22993137 -78880032 + L2 LINE L2 3177 3232 -40 212 152 0 0 chr13 22993211 22993244 -78879925 + L2 LINE L2 3240 3272 0 2365 96 3 0 chr13 22993560 22993862 -78879307 + AluSp SINE Alu 1 303 -10 613 270 52 56 chr13 22994320 22994553 -78878616 - MER102b DNA MER1_type -7 334 103 748 249 138 9 chr13 22997805 22998030 -78875139 - MIR SINE MIR -1 261 8 677 289 80 17 chr13 22998176 22998415 -78874754 + MIR SINE MIR 9 262 0 1050 193 78 21 chr13 23001027 23001067 -78872102 - MLT2B3 LTR ERVL 0 554 518 767 49 37 25 chr13 23001067 23001230 -78871939 + (TA)n Simple_repeat Simple_repeat 2 166 0 198 0 0 0 chr13 23001239 23001261 -78871908 + (GA)n Simple_repeat Simple_repeat 2 23 0 1050 193 78 21 chr13 23001261 23001522 -78871647 - MLT2B3 LTR ERVL -43 511 229 1927 130 19 16 chr13 23001523 23001649 -78871520 + AluSq SINE Alu 1 125 -188 189 0 0 0 chr13 23001649 23001670 -78871499 + (CA)n Simple_repeat Simple_repeat 2 22 0 1927 130 19 16 chr13 23001670 23001851 -78871318 + AluSq SINE Alu 125 309 -4 513 128 29 0 chr13 23001851 23001953 -78871216 + GA-rich Low_complexity Low_complexity 1 105 0 1653 116 39 4 chr13 23001954 23002213 -78870956 - MLT2A2 LTR ERVL -185 268 1 269 247 24 35 chr13 23002263 23002348 -78870821 - L2 LINE L2 -1 3271 3188 1429 183 66 101 chr13 23002555 23002725 -78870444 + MLT1A1 LTR MaLR 1 175 -190 278 26 26 0 chr13 23002725 23002764 -78870405 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1429 183 66 101 chr13 23002764 23002970 -78870199 + MLT1A1 LTR MaLR 175 364 -1 189 74 0 0 chr13 23003338 23003365 -78869804 + (TA)n Simple_repeat Simple_repeat 2 28 0 335 285 162 54 chr13 23003624 23004013 -78869156 + L2 LINE L2 2842 3272 0 613 265 40 20 chr13 23004090 23004290 -78868879 - MIR SINE MIR -17 245 42 1844 87 0 4 chr13 23004387 23004628 -78868541 - AluSc SINE Alu -1 308 69 431 367 65 4 chr13 23005896 23006125 -78867044 + MIR SINE MIR 20 262 0 211 293 173 0 chr13 23006391 23006466 -78866703 + MIR SINE MIR 30 117 -91 279 337 0 12 chr13 23006483 23006569 -78866600 + MIR SINE MIR 11 95 -167 727 259 22 0 chr13 23006584 23006769 -78866400 - MIR SINE MIR -6 256 68 207 333 126 0 chr13 23006886 23006973 -78866196 - L2 LINE L2 -20 3252 3155 224 267 17 0 chr13 23007399 23007459 -78865710 - L2 LINE L2 -2 3311 3251 333 222 8 64 chr13 23007738 23007849 -78865320 + MIR SINE MIR 46 154 -66 231 88 0 0 chr13 23008693 23008727 -78864442 + (TCC)n Simple_repeat Simple_repeat 1 34 0 1660 91 5 0 chr13 23008813 23009023 -78864146 - AluSq SINE Alu -19 294 84 1299 85 17 0 chr13 23009456 23009632 -78863537 + AluSg/x SINE Alu 129 307 -5 225 349 163 5 chr13 23009917 23010126 -78863043 - L3b LINE CR1 -218 1365 1124 210 319 0 0 chr13 23010502 23010549 -78862620 + MIR SINE MIR 29 75 -133 526 298 162 5 chr13 23011451 23011649 -78861520 - L3 LINE CR1 -1 1576 1348 998 139 0 6 chr13 23012484 23012515 -78860654 + (GGAA)n Simple_repeat Simple_repeat 1 209 0 998 139 0 6 chr13 23012515 23012695 -78860474 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 259 282 88 94 chr13 23012736 23012917 -78860252 - L3 LINE CR1 -279 1298 1119 204 200 17 50 chr13 23013424 23013484 -78859685 + GA-rich Low_complexity Low_complexity 6 63 0 222 353 78 33 chr13 23013979 23014132 -78859037 - L3 LINE CR1 -1166 411 252 260 292 46 138 chr13 23014581 23014821 -78858348 - MIR SINE MIR -10 252 35 2031 243 36 4 chr13 23016211 23016710 -78856459 + L1ME1 LINE L1 5647 6161 -5 2393 76 0 3 chr13 23016794 23017095 -78856074 + AluY SINE Alu 1 300 -11 186 43 0 0 chr13 23017672 23017695 -78855474 + (TGG)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr13 23017805 23017828 -78855341 + AT_rich Low_complexity Low_complexity 1 23 0 217 318 62 23 chr13 23019812 23019941 -78853228 - L2 LINE L2 0 3313 3180 439 202 56 22 chr13 23021139 23021228 -78851941 - MER81 DNA DNA -21 93 2 813 226 24 0 chr13 23021549 23021713 -78851456 + MER5A DNA MER1_type 21 188 -1 2772 26 3 0 chr13 23021824 23022134 -78851035 - AluY SINE Alu 0 311 1 215 321 48 0 chr13 23023768 23023852 -78849317 - L2 LINE L2 0 3272 3185 938 196 88 0 chr13 23023881 23024075 -78849094 - MIR SINE MIR -49 213 3 2327 111 0 0 chr13 23025451 23025758 -78847411 - AluSx SINE Alu -5 307 1 1395 189 33 49 chr13 23025965 23026271 -78846898 - AluJo SINE Alu -6 306 6 541 331 116 52 chr13 23027003 23027667 -78845502 + L2 LINE L2 1610 2371 -943 1953 131 0 4 chr13 23027667 23027965 -78845204 - AluSx SINE Alu 0 307 11 541 331 116 52 chr13 23027965 23028367 -78844802 + L2 LINE L2 2371 2746 -568 216 97 0 0 chr13 23028473 23028504 -78844665 + (CAT)n Simple_repeat Simple_repeat 3 33 0 501 273 52 6 chr13 23028509 23028681 -78844488 - MIR SINE MIR -10 252 73 648 320 40 0 chr13 23030133 23030361 -78842808 - MIR SINE MIR 0 262 26 2213 108 3 7 chr13 23030438 23030766 -78842403 - AluSq SINE Alu 0 313 1 686 270 25 0 chr13 23030769 23030965 -78842204 - MIR SINE MIR -49 213 13 510 326 38 13 chr13 23031909 23032145 -78841024 + MIR SINE MIR 21 262 0 296 327 0 0 chr13 23033540 23033641 -78839528 - MIR SINE MIR -130 132 32 262 320 0 19 chr13 23034501 23034604 -78838565 - MIR SINE MIR -130 132 32 1219 242 81 73 chr13 23034852 23035344 -78837825 + MER21B LTR ERV1 100 595 -268 710 61 0 10 chr13 23036038 23036136 -78837033 + L1PB1 LINE L1 6054 6150 -1 27 49 0 0 chr13 23036136 23036177 -78836992 + AT_rich Low_complexity Low_complexity 1 41 0 2005 133 3 11 chr13 23036178 23036495 -78836674 - AluSx SINE Alu 0 315 1 190 241 0 19 chr13 23038945 23038999 -78834170 - MER5B DNA MER1_type -124 54 2 252 0 0 0 chr13 23039019 23039047 -78834122 + (CA)n Simple_repeat Simple_repeat 2 29 0 246 309 100 0 chr13 23039157 23039267 -78833902 + MIR3 SINE MIR 64 184 -24 537 295 62 48 chr13 23040928 23041264 -78831905 - MER102b DNA MER1_type 0 341 1 1034 99 35 0 chr13 23043038 23043179 -78829990 - AluSp/q SINE Alu -7 306 161 841 156 96 0 chr13 23043653 23043820 -78829349 - MER5A DNA MER1_type -1 188 6 21 36 0 0 chr13 23044166 23044194 -78828975 + AT_rich Low_complexity Low_complexity 1 28 0 465 244 51 21 chr13 23044528 23044718 -78828451 + MIR SINE MIR 25 218 -44 256 269 11 75 chr13 23047541 23047634 -78825535 + MER5A DNA MER1_type 87 173 -16 327 293 41 0 chr13 23048588 23048711 -78824458 - L2 LINE L2 -6 3307 3180 243 283 0 0 chr13 23049029 23049082 -78824087 - L2 LINE L2 -680 2634 2582 312 309 146 28 chr13 23050336 23050514 -78822655 + MIR3 SINE MIR 3 201 -7 354 311 82 20 chr13 23052016 23052212 -78820957 + L2 LINE L2 3075 3282 -31 1569 192 0 21 chr13 23053591 23053877 -78819292 + AluJb SINE Alu 3 282 -30 24 0 0 0 chr13 23053886 23053910 -78819259 + AT_rich Low_complexity Low_complexity 1 24 0 1766 217 125 53 chr13 23055477 23055989 -78817180 - MLT1H LTR MaLR 0 549 1 362 202 48 0 chr13 23058010 23058094 -78815075 - Charlie8 DNA MER1_type -2259 158 71 269 276 41 41 chr13 23058588 23058711 -78814458 - MIR3 SINE MIR -54 154 32 456 311 144 0 chr13 23058965 23059145 -78814024 - MIR SINE MIR -29 233 28 333 228 138 83 chr13 23060980 23061125 -78812044 + MER5A DNA MER1_type 37 189 0 2012 154 0 10 chr13 23061576 23061881 -78811288 - AluJb SINE Alu 0 312 11 549 255 50 6 chr13 23062059 23062220 -78810949 + MER5B DNA MER1_type 9 176 -2 870 183 5 42 chr13 23062974 23063165 -78810004 + MER5A DNA MER1_type 5 188 -1 190 259 69 17 chr13 23063783 23063841 -78809328 - MIR SINE MIR -127 81 21 4331 108 21 3 chr13 23064813 23065436 -78807733 - MER51A LTR ERV1 0 634 1 453 270 36 0 chr13 23065861 23065998 -78807171 - MIR SINE MIR 0 262 121 26 0 0 0 chr13 23067063 23067089 -78806080 + AT_rich Low_complexity Low_complexity 1 26 0 1701 162 30 18 chr13 23067219 23067553 -78805616 - L1MB8 LINE L1 -1 6177 5840 28 0 0 0 chr13 23067636 23067664 -78805505 + AT_rich Low_complexity Low_complexity 1 28 0 193 284 241 12 chr13 23067666 23067828 -78805341 - MIR SINE MIR -32 230 32 608 226 77 52 chr13 23068042 23068290 -78804879 + MIR SINE MIR 9 262 0 2457 90 0 3 chr13 23068653 23068964 -78804205 + AluSg SINE Alu 1 310 0 271 331 52 15 chr13 23069330 23069466 -78803703 + L1ME LINE L1 5684 5824 -297 2258 237 78 95 chr13 23070874 23071464 -78801705 - MLT1G LTR MaLR -15 575 1 2198 108 3 10 chr13 23072124 23072421 -78800748 + AluSx SINE Alu 1 295 -17 697 275 90 9 chr13 23072705 23072938 -78800231 - MIR SINE MIR -5 257 6 711 163 188 6 chr13 23073393 23073553 -78799616 - MER53 DNA DNA 0 189 1 313 176 15 0 chr13 23073822 23073890 -78799279 - L1MC4 LINE L1 0 8042 7974 699 257 40 14 chr13 23074093 23074315 -78798854 - L1MC4 LINE L1 -203 7839 7612 571 309 100 0 chr13 23074334 23074554 -78798615 - MIR SINE MIR -20 242 1 205 339 104 42 chr13 23074735 23074927 -78798242 + MIR SINE MIR 47 250 -12 1772 197 67 6 chr13 23075338 23075694 -78797475 + MLT1B LTR MaLR 1 378 -12 1543 99 49 0 chr13 23075747 23075925 -78797244 + MLT2A2 LTR ERVL 220 413 -40 333 0 0 0 chr13 23075925 23075962 -78797207 + (TG)n Simple_repeat Simple_repeat 2 38 0 1543 99 49 0 chr13 23075962 23076006 -78797163 + MLT2A2 LTR ERVL 413 453 0 2135 128 0 0 chr13 23077624 23077914 -78795255 - AluSx SINE Alu -15 297 8 492 157 22 11 chr13 23079872 23079961 -78793208 - MER46A DNA MER2_type -97 139 50 320 323 60 42 chr13 23080694 23080911 -78792258 - MIR SINE MIR -24 238 18 287 296 40 59 chr13 23080959 23081111 -78792058 + MIR SINE MIR 39 187 -75 856 201 0 19 chr13 23081166 23081325 -78791844 - FRAM SINE Alu -7 159 4 528 251 113 88 chr13 23081455 23081898 -78791271 - MLT1L LTR MaLR 0 615 162 293 194 30 15 chr13 23081936 23082003 -78791166 - MLT1L LTR MaLR -543 72 5 261 282 73 16 chr13 23083570 23083694 -78789475 - MIR SINE MIR -46 216 86 1247 144 8 58 chr13 23084816 23085059 -78788110 - L1PA13 LINE L1 -7 6156 5926 258 252 189 0 chr13 23088296 23088407 -78784762 + L2 LINE L2 3182 3313 0 288 0 0 0 chr13 23089102 23089134 -78784035 + (TC)n Simple_repeat Simple_repeat 1 32 0 257 233 128 0 chr13 23089336 23089422 -78783747 + MER5A DNA MER1_type 10 106 -83 2242 116 0 10 chr13 23089516 23089827 -78783342 + AluSg SINE Alu 1 308 -2 359 275 38 33 chr13 23090195 23090405 -78782764 + MIR SINE MIR 17 232 -30 821 141 59 82 chr13 23090757 23090977 -78782192 + MER20 DNA MER1_type 1 215 -4 359 297 97 11 chr13 23091459 23091634 -78781535 + MLT1L LTR MaLR 368 557 -58 2027 97 0 4 chr13 23091820 23092077 -78781092 - AluSq SINE Alu -26 287 32 403 257 26 9 chr13 23093311 23093424 -78779745 + MIR SINE MIR 81 195 -67 516 271 103 23 chr13 23093442 23093656 -78779513 + MIR SINE MIR 2 232 -30 204 217 0 0 chr13 23093687 23093733 -78779436 + MIR SINE MIR 215 260 -2 1519 237 22 16 chr13 23093889 23094252 -78778917 - MLT1A2 LTR MaLR -5 369 5 22 0 0 0 chr13 23095448 23095470 -78777699 + AT_rich Low_complexity Low_complexity 1 22 0 330 328 8 22 chr13 23096557 23096691 -78776478 - MER5A DNA MER1_type 0 189 58 222 285 60 53 chr13 23096577 23096728 -78776441 + MER5A DNA MER1_type 31 182 -7 * 222 339 100 83 chr13 23096958 23097297 -78775872 - L2 LINE L2 -50 3222 2878 2014 163 12 15 chr13 23097328 23097671 -78775498 - MLT1A1 LTR MaLR 0 365 24 377 240 11 33 chr13 23098797 23098980 -78774189 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 237 236 0 0 chr13 23099012 23099067 -78774102 - MIR SINE MIR -112 150 96 934 244 40 4 chr13 23099499 23099749 -78773420 - MIR SINE MIR 0 262 4 180 0 0 0 chr13 23102288 23102308 -78770861 + (TTG)n Simple_repeat Simple_repeat 2 21 0 234 270 52 43 chr13 23102733 23102848 -78770321 - MIR3 SINE MIR -29 179 64 183 80 0 0 chr13 23102907 23102932 -78770237 + (CCCCCA)n Simple_repeat Simple_repeat 3 27 0 420 335 36 0 chr13 23106949 23107116 -78766053 + L3b LINE CR1 1264 1436 -147 222 167 24 0 chr13 23108259 23108301 -78764868 + (TA)n Simple_repeat Simple_repeat 1 43 0 1142 182 36 9 chr13 23110474 23110699 -78762470 + L1MC1 LINE L1 6101 6331 -2 1675 231 164 25 chr13 23110989 23111539 -78761630 - MLT1E2 LTR MaLR 0 626 1 192 255 189 20 chr13 23111539 23111692 -78761477 + L2 LINE L2 1828 2006 -1308 2172 117 3 0 chr13 23112009 23112307 -78760862 + AluSp SINE Alu 2 300 -13 1846 163 3 16 chr13 23112569 23112875 -78760294 + AluJo SINE Alu 1 302 -10 520 139 0 0 chr13 23113015 23113101 -78760068 + MER5A DNA MER1_type 20 105 -84 228 356 130 18 chr13 23113324 23113608 -78759561 + L2 LINE L2 2910 3225 -47 320 250 36 0 chr13 23114263 23114347 -78758822 + MIR SINE MIR 120 206 -56 2286 119 0 0 chr13 23114726 23115038 -78758131 - AluSx SINE Alu 0 312 1 2179 179 39 10 chr13 23116173 23116587 -78756582 + MSTB LTR MaLR 1 426 0 285 289 26 50 chr13 23116800 23116924 -78756245 - MIR SINE MIR -67 141 46 293 274 18 44 chr13 23117030 23117167 -78756002 - LTR33A LTR ERVL -2 521 411 241 311 48 0 chr13 23117425 23117528 -78755641 - LTR67 LTR ERVL -336 221 114 309 26 0 0 chr13 23118214 23118252 -78754917 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr13 23118261 23118299 -78754870 + AT_rich Low_complexity Low_complexity 1 38 0 531 353 92 11 chr13 23118325 23118673 -78754496 + L3 LINE CR1 1068 1443 -134 201 39 0 0 chr13 23119570 23119596 -78753573 + (TG)n Simple_repeat Simple_repeat 1 26 0 180 258 135 0 chr13 23120988 23121077 -78752092 + MIR SINE MIR 162 262 0 338 288 42 42 chr13 23121175 23121293 -78751876 + L2 LINE L2 3137 3254 -18 223 265 29 20 chr13 23121485 23121587 -78751582 + MER5A DNA MER1_type 85 187 -2 2513 77 0 0 chr13 23123012 23123323 -78749846 + AluY SINE Alu 1 311 0 273 186 246 36 chr13 23123540 23123707 -78749462 + L2 LINE L2 3107 3308 -5 1028 152 25 0 chr13 23124645 23124803 -78748366 - AluSg/x SINE Alu -15 297 136 2424 149 39 12 chr13 23124841 23125250 -78747919 - MSTB LTR MaLR 0 426 7 207 0 0 0 chr13 23125331 23125354 -78747815 + (CAA)n Simple_repeat Simple_repeat 2 24 0 218 236 56 0 chr13 23125634 23125706 -78747463 - L2 LINE L2 -215 3057 2982 201 286 51 41 chr13 23125721 23125819 -78747350 - L2 LINE L2 -49 3264 3166 194 333 106 8 chr13 23126558 23126681 -78746488 + L2 LINE L2 2681 2815 -499 512 249 30 6 chr13 23126726 23126891 -78746278 - L1M4 LINE L1 -775 5371 5203 329 306 171 14 chr13 23127437 23127653 -78745516 + MIR SINE MIR 13 262 0 522 173 0 0 chr13 23127868 23127972 -78745197 + (TCCA)n Simple_repeat Simple_repeat 2 105 0 317 250 54 45 chr13 23127972 23128084 -78745085 - L2 LINE L2 0 3272 3160 260 367 120 6 chr13 23128178 23128336 -78744833 + MIR3 SINE MIR 20 195 -13 267 291 53 76 chr13 23129037 23129339 -78743830 + L2 LINE L2 2943 3237 -35 523 296 23 6 chr13 23129367 23129539 -78743630 - MIR SINE MIR 0 262 88 368 206 0 0 chr13 23129717 23129785 -78743384 - AluJo SINE Alu -7 295 228 553 179 9 28 chr13 23129785 23129891 -78743278 - AluJo SINE Alu -160 152 49 180 135 0 0 chr13 23130877 23130914 -78742255 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 2172 181 21 65 chr13 23130987 23131513 -78741656 - MLT1D LTR MaLR -2 503 1 1414 245 52 46 chr13 23132071 23132573 -78740596 + MLT1D LTR MaLR 1 505 0 354 212 0 0 chr13 23132961 23133060 -78740109 + (CA)n Simple_repeat Simple_repeat 1 99 0 189 270 0 0 chr13 23133469 23133506 -78739663 - L2 LINE L2 -34 3279 3243 520 216 60 0 chr13 23133871 23133987 -78739182 - L1PB4 LINE L1 0 6156 6034 1279 301 93 21 chr13 23133992 23134809 -78738360 - L2 LINE L2 -1064 2250 1375 411 288 76 83 chr13 23135082 23135502 -78737667 + L1MEd LINE L1 176 592 -5613 337 289 79 5 chr13 23135555 23135609 -78737560 + L1MEd LINE L1 723 772 -5433 204 40 0 0 chr13 23135609 23135634 -78737535 + (CAGAGA)n Simple_repeat Simple_repeat 6 30 0 337 289 79 5 chr13 23135634 23135769 -78737400 + L1MEd LINE L1 772 926 -5279 731 87 0 39 chr13 23135787 23135891 -78737278 + HY3 scRNA scRNA 1 100 -1 504 145 111 26 chr13 23135933 23136050 -78737119 + L1MB1 LINE L1 6042 6168 0 * 570 259 62 69 chr13 23136047 23136223 -78736946 + L1MEd LINE L1 935 1111 -5094 2178 113 3 0 chr13 23136223 23136528 -78736641 + AluSx SINE Alu 1 306 0 570 259 62 69 chr13 23136528 23136755 -78736414 + L1MEd LINE L1 1111 1336 -4869 443 285 79 18 chr13 23136892 23137120 -78736049 + L1MEd LINE L1 1573 1814 -4582 186 340 92 76 chr13 23138169 23138551 -78734618 - L2 LINE L2 -48 3224 2837 22 0 0 0 chr13 23138674 23138696 -78734473 + AT_rich Low_complexity Low_complexity 1 22 0 300 350 79 46 chr13 23138727 23139118 -78734051 - L2 LINE L2 -649 2665 2262 262 257 68 23 chr13 23140603 23140702 -78732467 + MIR SINE MIR 56 162 -46 690 204 45 17 chr13 23140711 23140887 -78732282 + Charlie8 DNA MER1_type 57 237 -2180 1059 180 24 33 chr13 23140976 23141187 -78731982 - MER3 DNA MER1_type 0 209 1 362 301 22 22 chr13 23142084 23142220 -78730949 + MER5B DNA MER1_type 43 178 0 2310 76 38 3 chr13 23143555 23143846 -78729323 - AluY SINE Alu -10 301 1 323 301 90 8 chr13 23144038 23144171 -78728998 + MER5B DNA MER1_type 4 147 -31 395 183 11 32 chr13 23144306 23144399 -78728770 - MER5A DNA MER1_type -90 99 9 429 274 97 6 chr13 23144485 23144660 -78728509 + MIR SINE MIR 2 192 -70 378 0 0 0 chr13 23144870 23144912 -78728257 + (TG)n Simple_repeat Simple_repeat 2 43 0 866 47 0 0 chr13 23146019 23146126 -78727043 - L1PA8 LINE L1 0 6172 6066 346 323 51 13 chr13 23146424 23146582 -78726587 + MER5B DNA MER1_type 9 172 -6 * 438 340 6 19 chr13 23146570 23146729 -78726440 - MIR3 SINE MIR -32 176 20 239 236 42 0 chr13 23147134 23147206 -78725963 + MIR SINE MIR 173 247 -15 584 235 157 0 chr13 23147863 23148016 -78725153 + MER5A DNA MER1_type 13 189 0 266 294 29 0 chr13 23148333 23148435 -78724734 - L1MC4 LINE L1 -1324 6718 6614 2310 182 30 32 chr13 23148456 23148929 -78724240 - MLT2B1 LTR ERVL -48 472 1 421 265 164 60 chr13 23148952 23149577 -78723592 + L2 LINE L2 2574 3251 -62 330 338 105 18 chr13 23151300 23151634 -78721535 + L2 LINE L2 2920 3282 -31 249 33 0 0 chr13 23151641 23151671 -78721498 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 237 255 32 11 chr13 23152367 23152461 -78720708 + L2 LINE L2 2934 3029 -243 224 283 44 62 chr13 23153427 23153540 -78719629 + MIR SINE MIR 46 156 -106 270 170 19 0 chr13 23154745 23154798 -78718371 + MER116 DNA Mariner 22 75 -5 254 239 43 33 chr13 23155471 23155563 -78717606 - L3 LINE CR1 -62 1515 1423 489 297 29 42 chr13 23155620 23155859 -78717310 + MIR SINE MIR 15 250 -12 268 247 118 12 chr13 23155893 23155978 -78717191 - L3 LINE CR1 -255 1322 1229 2665 30 0 0 chr13 23156416 23156713 -78716456 + AluY SINE Alu 1 297 -14 745 256 256 10 chr13 23157563 23157795 -78715374 + L2 LINE L2 2805 2979 -334 180 0 0 0 chr13 23157795 23157815 -78715354 + (TC)n Simple_repeat Simple_repeat 1 20 0 745 256 256 10 chr13 23157815 23157989 -78715180 + L2 LINE L2 2979 3311 -2 275 244 39 0 chr13 23158672 23158750 -78714419 + GA-rich Low_complexity Low_complexity 1 81 0 566 322 10 5 chr13 23158858 23159066 -78714103 + MIR SINE MIR 30 238 -24 221 180 20 0 chr13 23159069 23159119 -78714050 + (CAT)n Simple_repeat Simple_repeat 1 51 0 197 293 67 0 chr13 23159129 23159204 -78713965 - MIR SINE MIR -42 220 141 198 260 20 0 chr13 23159454 23159504 -78713665 + MIR SINE MIR 21 71 -137 498 276 10 36 chr13 23160204 23160400 -78712769 + MIR SINE MIR 44 234 -28 632 297 4 48 chr13 23162359 23162608 -78710561 + MIR SINE MIR 15 252 -10 1660 59 0 18 chr13 23162613 23162832 -78710337 + L1PA8 LINE L1 5957 6171 -1 2351 105 0 7 chr13 23165389 23165694 -78707475 - AluSx SINE Alu -9 303 1 404 226 135 30 chr13 23166242 23166375 -78706794 - MLT1K LTR MaLR -254 334 188 1817 245 89 35 chr13 23166393 23166932 -78706237 - MLT1E2 LTR MaLR -8 618 51 262 339 87 0 chr13 23167592 23167719 -78705450 + MIR3 SINE MIR 20 157 -51 1188 289 51 12 chr13 23168292 23168701 -78704468 - LTR16A LTR ERVL 0 450 26 1986 161 70 21 chr13 23169047 23169419 -78703750 - MLT1B LTR MaLR 0 390 1 189 0 0 0 chr13 23169531 23169552 -78703617 + (T)n Simple_repeat Simple_repeat 1 21 0 501 110 0 128 chr13 23169592 23169701 -78703468 - L1PA10 LINE L1 0 6168 6074 250 209 108 39 chr13 23169722 23169851 -78703318 - L1ME4a LINE L1 -40 6081 5944 218 57 57 0 chr13 23170312 23170347 -78702822 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 350 210 0 10 chr13 23171096 23171196 -78701973 + GA-rich Low_complexity Low_complexity 4 102 0 227 229 0 16 chr13 23171179 23171199 -78701970 - LTR66 LTR ERVL -152 458 439 * 201 147 0 0 chr13 23171199 23171233 -78701936 + (TA)n Simple_repeat Simple_repeat 2 35 0 586 199 87 0 chr13 23172046 23172207 -78700962 + MER96B DNA MER1_type? 1 175 -242 561 138 0 0 chr13 23172348 23172442 -78700727 + L1MA8 LINE L1 6186 6279 -12 676 182 49 28 chr13 23223015 23223158 -78650011 + MER69 DNA AcHobo 2380 2525 -1 371 184 208 48 chr13 23223964 23224089 -78649080 - L2 LINE L2 0 3313 3169 461 259 93 51 chr13 23225462 23225678 -78647491 - L2 LINE L2 -123 3190 2966 315 277 0 0 chr13 23225987 23226052 -78647117 + MER69 DNA AcHobo 1 65 -2461 2617 267 106 12 chr13 23226062 23226947 -78646222 - L2 LINE L2 -363 2951 1984 298 268 52 0 chr13 23226948 23227045 -78646124 - L2 LINE L2 -2383 931 830 227 179 221 63 chr13 23227046 23227141 -78646028 - Charlie2 DNA MER1_type -2718 144 35 439 254 164 5 chr13 23227238 23227427 -78645742 + L2 LINE L2 1319 1537 -1777 460 244 64 19 chr13 23227431 23227587 -78645582 + L1MC4 LINE L1 7879 8041 -1 1172 210 178 25 chr13 23227623 23227923 -78645246 + Charlie2 DNA MER1_type 2249 2502 -360 2243 60 63 0 chr13 23227923 23228207 -78644962 - AluY SINE Alu -9 302 1 1172 210 178 25 chr13 23228207 23228435 -78644734 + Charlie2 DNA MER1_type 2502 2858 -4 1213 297 79 2 chr13 23228470 23228888 -78644281 - L2 LINE L2 -2031 1283 834 1495 220 133 21 chr13 23228888 23229470 -78643699 + MLT1E3 LTR MaLR 1 597 -27 1911 273 88 26 chr13 23229486 23230216 -78642953 - L2 LINE L2 -2492 822 48 1971 185 83 37 chr13 23230496 23230929 -78642240 - MSTB2 LTR MaLR 0 457 5 24 0 0 0 chr13 23231707 23231731 -78641438 + AT_rich Low_complexity Low_complexity 1 24 0 376 349 94 10 chr13 23232231 23232423 -78640746 - MIR SINE MIR -21 241 34 1251 168 15 58 chr13 23232892 23233166 -78640003 + AluJo SINE Alu 48 309 -3 650 254 128 89 chr13 23234187 23234750 -78638419 + MER45C DNA AcHobo 4 633 -320 354 127 0 0 chr13 23234745 23234800 -78638369 + MER45C DNA AcHobo 899 953 0 * 222 320 26 0 chr13 23234830 23234908 -78638261 - L3 LINE CR1 -763 814 735 440 299 69 10 chr13 23235255 23235459 -78637710 - MER67D LTR ERV1 -3 511 296 * 1806 201 37 16 chr13 23235457 23235840 -78637329 - MER67B LTR ERV1 -270 391 1 451 335 65 39 chr13 23236782 23237092 -78636077 + L3 LINE CR1 687 1004 -573 1483 208 68 42 chr13 23237953 23238377 -78634792 - L1ME1 LINE L1 -4 6162 5728 1853 185 46 48 chr13 23238397 23238857 -78634312 + MLT1C LTR MaLR 1 459 -8 1494 202 105 8 chr13 23238863 23239743 -78633426 - L1ME1 LINE L1 -470 5696 4680 180 301 89 96 chr13 23240381 23240527 -78632642 - L2 LINE L2 -5 3267 3123 786 229 62 110 chr13 23241621 23242040 -78631129 - MLT1J LTR MaLR -3 508 110 230 236 36 0 chr13 23241999 23242054 -78631115 - LTR67 LTR ERVL -401 156 100 * 582 15 0 0 chr13 23242976 23243043 -78630126 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 295 152 15 15 chr13 23243043 23243109 -78630060 + GA-rich Low_complexity Low_complexity 2 67 0 518 269 73 18 chr13 23243850 23243897 -78629272 + MIR SINE MIR 10 53 -209 2026 130 10 17 chr13 23243897 23244197 -78628972 + AluSx SINE Alu 1 298 -14 518 269 73 18 chr13 23244197 23244384 -78628785 + MIR SINE MIR 53 250 -12 1191 158 79 0 chr13 23244664 23244866 -78628303 + MER58A DNA MER1_type 1 218 -6 255 311 119 37 chr13 23245485 23245729 -78627440 - L2 LINE L2 -653 2661 2398 1200 107 40 0 chr13 23245774 23245951 -78627218 - L1MB2 LINE L1 -3 6168 5985 254 314 57 19 chr13 23246074 23246179 -78626990 - L2 LINE L2 0 3272 3164 1786 235 21 41 chr13 23246774 23247242 -78625927 + MER20B DNA MER1_type 33 491 -292 597 157 0 0 chr13 23247402 23247491 -78625678 + AluSg/x SINE Alu 208 296 -16 240 203 43 29 chr13 23247499 23247568 -78625601 + MIR SINE MIR 57 126 -136 408 154 108 15 chr13 23247798 23247928 -78625241 + MER20B DNA MER1_type 568 709 -74 244 288 15 0 chr13 23247929 23247995 -78625174 - MIR SINE MIR -75 133 67 353 350 126 37 chr13 23248066 23248495 -78624674 - L2 LINE L2 -2 3270 2804 195 303 134 79 chr13 23248627 23249007 -78624162 - L2 LINE L2 -694 2620 2220 287 288 230 7 chr13 23249015 23249154 -78624015 - MIR SINE MIR -70 192 23 1012 181 0 0 chr13 23251026 23251197 -78621972 - FRAM SINE Alu -7 169 1 196 326 101 11 chr13 23251676 23251765 -78621404 - L2 LINE L2 -25 3288 3192 432 258 198 22 chr13 23252052 23252234 -78620935 - MIR SINE MIR -18 244 31 1750 185 0 13 chr13 23253916 23254218 -78618951 + AluJo SINE Alu 1 298 -14 399 285 107 69 chr13 23255173 23255492 -78617677 - L2 LINE L2 0 3272 2942 355 310 53 103 chr13 23256240 23256708 -78616461 + L2 LINE L2 2824 3268 -4 252 240 140 0 chr13 23257326 23257426 -78615743 - MER103 DNA DNA -2 164 51 258 32 0 0 chr13 23257549 23257580 -78615589 + (CA)n Simple_repeat Simple_repeat 2 32 0 214 158 0 0 chr13 23257969 23258007 -78615162 + CT-rich Low_complexity Low_complexity 1 38 0 193 29 59 0 chr13 23259030 23259064 -78614105 + (TA)n Simple_repeat Simple_repeat 2 37 0 1292 113 61 19 chr13 23259574 23259821 -78613348 + L1PA11 LINE L1 5940 6195 0 2213 129 0 0 chr13 23259903 23260212 -78612957 + AluSx SINE Alu 3 311 -1 213 297 30 69 chr13 23260492 23260593 -78612576 + MIR SINE MIR 15 111 -151 770 198 111 0 chr13 23261011 23261183 -78611986 + MIR SINE MIR 7 197 -65 530 317 6 28 chr13 23261181 23261361 -78611808 - MIR SINE MIR -73 189 14 * 228 271 0 0 chr13 23261650 23261698 -78611471 + polypurine Low_complexity Low_complexity 3 50 0 238 290 62 92 chr13 23261782 23262054 -78611115 - L2 LINE L2 -1491 1823 1560 588 65 0 0 chr13 23262090 23262167 -78611002 + (GGATG)n Simple_repeat Simple_repeat 5 81 0 249 33 0 0 chr13 23262167 23262197 -78610972 - MLT2A2 LTR ERVL 0 453 424 9475 70 6 1 chr13 23262198 23263374 -78609795 - HERVL-A1 LTR ERVL -4472 1182 1 3177 69 72 19 chr13 23263374 23263420 -78609749 - MLT2A1 LTR ERVL 0 444 402 441 97 0 0 chr13 23263420 23263492 -78609677 + (TA)n Simple_repeat Simple_repeat 2 73 0 3177 69 72 19 chr13 23263492 23263863 -78609306 - MLT2A1 LTR ERVL -42 402 5 306 212 15 15 chr13 23263916 23263982 -78609187 - MER112 DNA MER1_type -186 74 9 232 230 0 54 chr13 23264152 23264226 -78608943 - L2 LINE L2 -1 3312 3243 2017 124 7 7 chr13 23265071 23265383 -78607786 - AluSq SINE Alu 0 313 1 211 262 33 0 chr13 23265383 23265444 -78607725 - MIR3 SINE MIR -54 154 92 197 278 134 12 chr13 23266391 23266496 -78606673 - MIR SINE MIR -62 146 27 242 309 203 0 chr13 23267808 23267931 -78605238 + MIR SINE MIR 16 163 -99 341 204 9 3 chr13 23269542 23269679 -78603490 + MER96B DNA MER1_type? 1 176 -241 201 121 30 15 chr13 23269905 23269971 -78603198 + (TTTA)n Simple_repeat Simple_repeat 4 70 0 21 82 0 0 chr13 23269977 23270026 -78603143 + AT_rich Low_complexity Low_complexity 1 49 0 2375 97 0 0 chr13 23270028 23270326 -78602843 + AluSx SINE Alu 1 298 -14 25 31 0 0 chr13 23270343 23270375 -78602794 + AT_rich Low_complexity Low_complexity 1 32 0 251 143 24 0 chr13 23270392 23270434 -78602735 + MER96B DNA MER1_type? 190 232 -185 1655 174 36 44 chr13 23270670 23270804 -78602365 + MLT1A1 LTR MaLR 2 136 -229 2579 125 80 10 chr13 23270804 23271204 -78601965 - MSTA LTR MaLR 0 428 1 1655 174 36 44 chr13 23271204 23271432 -78601737 + MLT1A1 LTR MaLR 136 361 -4 219 204 0 0 chr13 23271451 23271500 -78601669 + (TG)n Simple_repeat Simple_repeat 2 50 0 1843 114 4 46 chr13 23272543 23272824 -78600345 - AluSx SINE Alu -17 295 27 474 357 43 4 chr13 23272987 23273222 -78599947 - MIR SINE MIR 0 262 19 424 272 24 0 chr13 23274037 23274162 -78599007 - MER94 DNA DNA -5 129 2 309 215 108 39 chr13 23275742 23275872 -78597297 - MLT1H LTR MaLR -375 174 36 275 280 0 0 chr13 23275891 23275966 -78597203 - L1P4 LINE L1 -361 5805 5731 238 248 37 55 chr13 23276001 23276110 -78597059 - MIR SINE MIR -70 192 86 3052 163 62 85 chr13 23276934 23277678 -78595491 - LTR8A LTR ERV1 0 727 1 2084 250 50 44 chr13 23277678 23278335 -78594834 - HUERS-P1 LTR ERV1 0 6263 5603 4782 148 88 42 chr13 23278345 23278399 -78594770 - HUERS-P1 LTR ERV1 -2862 5258 5208 2259 102 3 7 chr13 23278399 23278694 -78594475 + AluSq SINE Alu 1 294 -19 4782 148 88 42 chr13 23278694 23279690 -78593479 - HUERS-P1 LTR ERV1 -2912 5208 2326 189 107 0 0 chr13 23279697 23279725 -78593444 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3577 91 12 4 chr13 23279725 23280211 -78592958 - L1PB1 LINE L1 -6 6145 5656 5107 123 17 5 chr13 23280219 23282599 -78590570 - L1PBa LINE L1 -2988 3874 1417 414 298 117 5 chr13 23282817 23283005 -78590164 - MER21B LTR ERV1 -633 230 22 427 193 0 34 chr13 23283029 23283117 -78590052 - MER21B LTR ERV1 -773 90 6 1889 214 59 4 chr13 23283157 23283644 -78589525 + L1MD3 LINE L1 5397 5809 -357 1827 179 153 37 chr13 23283659 23284150 -78589019 + LTR10A LTR ERV1 1 548 -61 556 244 39 12 chr13 23284157 23284375 -78588794 + L1MA10 LINE L1 5944 6323 -5 3439 132 29 61 chr13 23284453 23285076 -78588093 - LTR26 LTR ERV1 0 603 1 486 244 141 6 chr13 23285411 23285567 -78587602 - MER5B DNA MER1_type -1 177 1 321 211 70 47 chr13 23285826 23285954 -78587215 - L1ME4a LINE L1 -9 6112 5982 1795 171 10 3 chr13 23286078 23286388 -78586781 - AluSx SINE Alu 0 312 1 350 305 73 28 chr13 23287543 23287720 -78585449 - L2 LINE L2 -2 3311 3127 500 211 178 11 chr13 23288254 23288439 -78584730 + LTR16C LTR ERVL 274 489 -2 676 258 15 78 chr13 23288727 23288816 -78584353 + MIR SINE MIR 9 102 -160 2278 155 58 19 chr13 23288816 23289228 -78583941 + MSTA LTR MaLR 1 428 0 676 258 15 78 chr13 23289228 23289406 -78583763 + MIR SINE MIR 102 259 -3 684 271 122 37 chr13 23289658 23290094 -78583075 - L1ME4a LINE L1 -115 6006 5534 180 260 67 29 chr13 23291238 23291342 -78581827 - L3 LINE CR1 -417 1160 1053 607 213 133 76 chr13 23291543 23291979 -78581190 + L1ME4a LINE L1 5661 6121 0 2155 83 7 7 chr13 23292103 23292393 -78580776 - AluSg SINE Alu -18 292 3 2198 93 4 0 chr13 23293333 23293657 -78579512 - AluSp SINE Alu 0 326 2 324 0 0 0 chr13 23293667 23293703 -78579466 + (T)n Simple_repeat Simple_repeat 1 36 0 533 268 20 40 chr13 23294096 23294294 -78578875 + MIR SINE MIR 61 254 -8 584 221 6 37 chr13 23294699 23294862 -78578307 + MIR SINE MIR 104 261 -1 195 310 50 30 chr13 23294917 23295017 -78578152 + MIR SINE MIR 88 189 -73 212 0 36 0 chr13 23295059 23295087 -78578082 + (TTG)n Simple_repeat Simple_repeat 2 30 0 291 54 0 0 chr13 23295093 23295130 -78578039 + (TG)n Simple_repeat Simple_repeat 2 38 0 2127 92 11 14 chr13 23295130 23295414 -78577755 - AluSc SINE Alu -26 283 1 521 229 11 11 chr13 23296026 23296201 -78576968 + GA-rich Low_complexity Low_complexity 3 177 0 306 331 60 0 chr13 23296900 23297051 -78576118 - MIR SINE MIR -7 255 96 409 194 142 37 chr13 23297618 23297752 -78575417 + MIR SINE MIR 89 236 -26 180 271 0 0 chr13 23298335 23298383 -78574786 - L2 LINE L2 0 3313 3266 1932 132 86 9 chr13 23298427 23298775 -78574394 - THE1C LTR MaLR 0 375 1 188 301 58 39 chr13 23298817 23298973 -78574196 - L2 LINE L2 -292 3021 2863 959 189 43 56 chr13 23298974 23299039 -78574130 + MER96B DNA MER1_type? 1 65 -352 2271 106 0 7 chr13 23299039 23299341 -78573828 + AluSx SINE Alu 1 300 -12 959 189 43 56 chr13 23299341 23299508 -78573661 + MER96B DNA MER1_type? 65 230 -187 328 183 0 16 chr13 23299513 23299592 -78573577 - MER96B DNA MER1_type? -102 73 1 216 373 9 9 chr13 23300103 23300213 -78572956 + MIR SINE MIR 39 148 -114 279 268 83 51 chr13 23301165 23301322 -78571847 - MER20B DNA MER1_type -616 167 6 288 359 0 8 chr13 23301455 23301572 -78571597 + MIR SINE MIR 77 192 -70 365 314 69 0 chr13 23303316 23303504 -78569665 + MIR SINE MIR 62 262 0 4174 57 2 4 chr13 23304037 23304560 -78568609 + L1PA8 LINE L1 5650 6171 -1 501 17 0 0 chr13 23304713 23304771 -78568398 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 675 94 0 0 chr13 23304773 23304869 -78568300 + (GGAAA)n Simple_repeat Simple_repeat 4 99 0 1226 80 11 0 chr13 23304876 23305051 -78568118 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 644 115 21 0 chr13 23306011 23306107 -78567062 + AluJo SINE Alu 37 134 -178 22 35 0 0 chr13 23306158 23306187 -78566982 + AT_rich Low_complexity Low_complexity 1 29 0 257 288 172 18 chr13 23306257 23306694 -78566475 + L1M4 LINE L1 2311 2814 -3332 * 1268 215 37 44 chr13 23306675 23306719 -78566450 + L1M4 LINE L1 3346 3389 -2757 3537 118 39 0 chr13 23306719 23307226 -78565943 - MER1A DNA MER1_type 0 527 1 1268 215 37 44 chr13 23307226 23307586 -78565583 + L1M4 LINE L1 3389 3747 -2399 828 220 24 43 chr13 23307591 23307800 -78565369 + MER6B DNA MER2_type 6 210 0 526 226 16 16 chr13 23307800 23307924 -78565245 + L1M4 LINE L1 3746 3869 -2277 * 3666 178 27 19 chr13 23307919 23308789 -78564380 + L1M4 LINE L1 4597 5480 -694 246 32 0 0 chr13 23308789 23308820 -78564349 + (CA)n Simple_repeat Simple_repeat 2 32 0 3666 178 27 19 chr13 23308820 23309011 -78564158 + L1M4 LINE L1 5480 5668 -506 284 280 17 8 chr13 23309542 23309660 -78563509 - MIR SINE MIR -14 248 130 271 238 0 0 chr13 23309666 23309729 -78563440 - MIR SINE MIR 0 262 200 820 215 176 20 chr13 23309758 23310064 -78563105 + MLT1I LTR MaLR 72 390 -19 203 250 47 0 chr13 23310083 23310147 -78563022 - MIR SINE MIR -59 203 137 627 264 90 41 chr13 23310775 23310827 -78562342 - MIR SINE MIR 0 262 214 2515 76 0 0 chr13 23310827 23311128 -78562041 - AluSx SINE Alu -11 301 1 627 264 90 41 chr13 23311128 23311325 -78561844 - MIR SINE MIR -48 214 4 246 247 12 24 chr13 23311690 23311775 -78561394 + L2 LINE L2 3230 3313 0 2671 58 81 0 chr13 23311895 23312242 -78560927 + THE1C LTR MaLR 1 375 0 734 184 153 0 chr13 23313183 23313346 -78559823 - MER5A DNA MER1_type -1 188 1 219 267 13 27 chr13 23313422 23313497 -78559672 - MIR SINE MIR -169 93 20 180 0 0 0 chr13 23314052 23314072 -78559097 + (T)n Simple_repeat Simple_repeat 1 20 0 380 279 104 7 chr13 23316150 23316304 -78556865 - MIR3 SINE MIR -8 200 32 1926 137 0 11 chr13 23316450 23316734 -78556435 - AluJo SINE Alu -17 295 15 21 0 0 0 chr13 23316734 23316755 -78556414 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr13 23316900 23316935 -78556234 + (T)n Simple_repeat Simple_repeat 1 35 0 425 132 22 33 chr13 23317481 23317572 -78555597 + MER53 DNA DNA 93 182 -7 * 540 108 21 21 chr13 23317495 23317588 -78555581 - MER53 DNA DNA -96 93 1 549 262 139 18 chr13 23318043 23318270 -78554899 - MIR SINE MIR -9 253 9 234 273 65 0 chr13 23318533 23318610 -78554559 - MER5A DNA MER1_type -12 177 96 1956 89 100 4 chr13 23318621 23318890 -78554279 + AluSx SINE Alu 1 295 -17 276 314 69 0 chr13 23319002 23319104 -78554065 + L2 LINE L2 3145 3253 -19 1826 116 7 25 chr13 23320062 23320197 -78552972 + AluSg SINE Alu 1 137 -173 2410 96 0 3 chr13 23320197 23320510 -78552659 + AluSq SINE Alu 1 312 -1 1826 116 7 25 chr13 23320510 23320658 -78552511 + AluSg SINE Alu 137 279 -31 21 0 0 0 chr13 23320738 23320759 -78552410 + AT_rich Low_complexity Low_complexity 1 21 0 259 325 12 0 chr13 23321147 23321227 -78551942 + MIR SINE MIR 58 138 -124 498 269 9 104 chr13 23321613 23321825 -78551344 + MIR SINE MIR 33 224 -38 1000 172 5 32 chr13 23323278 23323464 -78549705 - AluJo SINE Alu -12 300 120 5012 16 0 0 chr13 23323490 23324050 -78549119 - L1PA2 LINE L1 -3 6152 5593 1573 206 58 3 chr13 23324150 23324510 -78548659 + L1MB4 LINE L1 5793 6172 -8 256 189 0 0 chr13 23324606 23324659 -78548510 + L1MCc LINE L1 1410 1462 -4961 962 112 0 0 chr13 23324670 23324795 -78548374 - AluSq SINE Alu -78 235 111 1564 268 105 10 chr13 23324804 23325479 -78547690 + L1MCc LINE L1 2926 3664 -3277 30 0 0 0 chr13 23325722 23325752 -78547417 + AT_rich Low_complexity Low_complexity 1 30 0 255 290 29 0 chr13 23325889 23325958 -78547211 - L2 LINE L2 -3 3269 3199 1426 153 9 113 chr13 23326126 23326453 -78546716 - AluJb SINE Alu -9 293 1 272 27 27 0 chr13 23326575 23326612 -78546557 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 189 143 29 0 chr13 23327006 23327041 -78546128 + L2 LINE L2 3266 3301 -12 509 267 82 0 chr13 23327358 23327504 -78545665 - MIR SINE MIR -2 260 103 181 333 148 30 chr13 23327587 23327890 -78545279 - L2 LINE L2 -1117 2197 1859 279 0 0 0 chr13 23327938 23327969 -78545200 + (TC)n Simple_repeat Simple_repeat 2 32 0 234 0 0 0 chr13 23328795 23328821 -78544348 + (A)n Simple_repeat Simple_repeat 1 26 0 1215 283 60 22 chr13 23330842 23331611 -78541558 + L2 LINE L2 2518 3312 -1 181 196 39 59 chr13 23331619 23331670 -78541499 - MIR SINE MIR -209 53 4 236 286 9 54 chr13 23331911 23332023 -78541146 + L2 LINE L2 3121 3227 -86 388 277 21 0 chr13 23332522 23332616 -78540553 + MER117 DNA MER1_type 101 196 -1 1778 175 0 19 chr13 23334137 23334445 -78538724 + AluJb SINE Alu 1 302 -10 318 239 29 142 chr13 23335226 23335465 -78537704 - MIR SINE MIR -16 246 35 2087 142 3 0 chr13 23336104 23336400 -78536769 - AluSx SINE Alu -15 297 1 340 329 41 7 chr13 23336423 23336569 -78536600 + MIR SINE MIR 30 180 -82 268 220 30 50 chr13 23336873 23336974 -78536195 - LTR67 LTR ERVL -14 509 412 1903 137 3 27 chr13 23337969 23338262 -78534907 - AluSx SINE Alu -26 286 1 23 0 0 0 chr13 23338300 23338323 -78534846 + AT_rich Low_complexity Low_complexity 1 23 0 3285 228 88 53 chr13 23338652 23339884 -78533285 - L1MC5 LINE L1 -30 7931 6656 512 199 65 111 chr13 23339905 23340211 -78532958 - L1MC5 LINE L1 -371 7590 7299 21994 66 11 5 chr13 23341824 23344823 -78528346 + L1P2 LINE L1 2460 5474 -680 1885 124 0 0 chr13 23345169 23345426 -78527743 + AluSx SINE Alu 1 257 -55 492 266 28 0 chr13 23346245 23346388 -78526781 + MER103 DNA DNA 3 149 -17 2255 126 0 0 chr13 23347706 23348008 -78525161 - AluSg SINE Alu -8 302 1 2352 130 0 23 chr13 23348099 23348444 -78524725 - MER1B DNA MER1_type 0 337 1 1342 112 0 0 chr13 23348665 23348843 -78524326 - AluSg/x SINE Alu -8 302 125 715 281 114 48 chr13 23348866 23349279 -78523890 + MLT1J1 LTR MaLR 1 440 -6 337 276 41 32 chr13 23349315 23349438 -78523731 + MIR SINE MIR 2 125 -137 21 57 0 0 chr13 23349861 23349896 -78523273 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 23350136 23350158 -78523011 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr13 23350929 23350967 -78522202 + (CA)n Simple_repeat Simple_repeat 2 39 0 330 87 0 0 chr13 23352047 23352093 -78521076 + (TG)n Simple_repeat Simple_repeat 2 47 0 748 356 76 7 chr13 23352934 23353367 -78519802 + L3 LINE CR1 945 1407 -170 279 336 0 0 chr13 23353923 23354027 -78519142 + L3 LINE CR1 1466 1569 -8 194 108 0 27 chr13 23354899 23354936 -78518233 + MER5B DNA MER1_type 66 101 -77 437 254 75 128 chr13 23356214 23356437 -78516732 - L2 LINE L2 -353 2961 2728 432 133 11 33 chr13 23356437 23356527 -78516642 - L1PB4 LINE L1 -1 6155 6068 437 254 75 128 chr13 23356527 23356550 -78516619 - L2 LINE L2 -586 2728 2705 617 68 0 0 chr13 23356550 23356638 -78516531 + L1PB1 LINE L1 6063 6150 -1 437 254 75 128 chr13 23356638 23356683 -78516486 - L2 LINE L2 -609 2705 2659 2393 50 0 0 chr13 23356683 23357004 -78516165 - AluY SINE Alu 0 321 1 437 254 75 128 chr13 23357004 23357232 -78515937 - L2 LINE L2 -655 2659 2467 1440 175 108 16 chr13 23357822 23358137 -78515032 + MER2 DNA MER2_type 1 344 0 428 254 105 74 chr13 23358508 23358831 -78514338 + MLT1I LTR MaLR 70 402 -7 1098 278 66 37 chr13 23359985 23360000 -78513169 - L1ME4a LINE L1 -30 6091 6078 342 0 0 0 chr13 23360000 23360038 -78513131 + (TA)n Simple_repeat Simple_repeat 2 39 0 1098 278 66 37 chr13 23360038 23360565 -78512604 - L1ME4a LINE L1 -43 6078 5533 2243 130 30 16 chr13 23361198 23361568 -78511601 + THE1C LTR MaLR 1 375 0 13880 69 16 8 chr13 23362321 23364948 -78508221 - L1PA6 LINE L1 0 6154 3513 40958 38 26 1 chr13 23365051 23369999 -78503170 - L1P LINE L1 -1074 5072 3 630 172 26 0 chr13 23370021 23370137 -78503032 - FLAM_C SINE Alu -21 122 4 1160 169 113 108 chr13 23370165 23370527 -78502642 - MLT1A1 LTR MaLR 0 365 2 846 222 5 26 chr13 23371120 23371309 -78501860 - MER5A DNA MER1_type -4 185 1 2618 127 43 19 chr13 23371415 23371833 -78501336 + MSTA LTR MaLR 1 428 0 369 369 45 14 chr13 23372106 23372328 -78500841 - MIR SINE MIR -13 249 21 243 250 17 17 chr13 23372635 23372695 -78500474 + MIR SINE MIR 197 256 -6 201 121 0 0 chr13 23372696 23372729 -78500440 + (CAT)n Simple_repeat Simple_repeat 3 35 0 22 0 0 0 chr13 23374855 23374877 -78498292 + AT_rich Low_complexity Low_complexity 1 22 0 556 274 11 11 chr13 23375685 23375864 -78497305 - MIR3 SINE MIR 0 208 30 192 231 0 0 chr13 23376964 23377003 -78496166 + L2 LINE L2 3189 3227 -86 754 210 27 21 chr13 23377208 23377394 -78495775 - MIR SINE MIR -29 233 47 1251 164 0 9 chr13 23378325 23378538 -78494631 - AluJo SINE Alu -14 298 88 2296 108 3 7 chr13 23378538 23378844 -78494325 - AluSx SINE Alu -7 305 1 21 36 0 0 chr13 23378853 23378881 -78494288 + AT_rich Low_complexity Low_complexity 1 28 0 1287 189 0 0 chr13 23378890 23379118 -78494051 - L1MC1 LINE L1 -90 6243 6016 578 236 16 39 chr13 23379407 23379589 -78493580 + MIR SINE MIR 4 181 -81 480 265 105 6 chr13 23379749 23379911 -78493258 - MER5A DNA MER1_type 0 189 12 188 279 0 82 chr13 23380029 23380090 -78493079 - MIR SINE MIR -137 71 16 305 300 39 20 chr13 23382585 23382745 -78490424 + MIR3 SINE MIR 34 199 -9 222 128 0 26 chr13 23382800 23382839 -78490330 - L2 LINE L2 -14 3299 3262 2764 98 0 6 chr13 23383767 23384133 -78489036 + THE1B LTR MaLR 1 364 0 282 349 47 0 chr13 23384273 23384402 -78488767 - MIR SINE MIR -68 194 60 199 200 0 0 chr13 23384914 23384954 -78488215 + L2 LINE L2 3274 3313 0 264 122 0 0 chr13 23385222 23385263 -78487906 + (T)n Simple_repeat Simple_repeat 1 41 0 184 247 182 13 chr13 23385906 23385983 -78487186 + L3 LINE CR1 589 678 -899 232 318 252 8 chr13 23386056 23386298 -78486871 + L2 LINE L2 3012 3312 -1 1162 74 0 0 chr13 23386446 23386594 -78486575 - L1PA8 LINE L1 -63 6109 5962 191 346 62 8 chr13 23386595 23386725 -78486444 + L3 LINE CR1 1279 1415 -162 305 297 8 34 chr13 23386754 23386872 -78486297 + L2 LINE L2 3199 3313 0 317 290 81 81 chr13 23386973 23387068 -78486101 + L2 LINE L2 3148 3245 -27 396 160 122 99 chr13 23387068 23387199 -78485970 + MER94 DNA DNA 1 134 0 317 290 81 81 chr13 23387199 23387227 -78485942 + L2 LINE L2 3244 3271 -1 464 236 75 75 chr13 23387270 23387469 -78485700 - L3 LINE CR1 -198 1379 1181 364 353 14 0 chr13 23388857 23388996 -78484173 + MIR3 SINE MIR 60 200 -8 440 267 145 0 chr13 23389220 23389392 -78483777 + MIR SINE MIR 63 259 -3 2803 44 3 3 chr13 23390318 23390660 -78482509 - L1PA5 LINE L1 -9 6145 5804 1183 77 6 3 chr13 23390660 23390824 -78482345 + L1PA3 LINE L1 5687 5854 -267 2102 129 3 3 chr13 23390976 23391279 -78481890 - AluSx SINE Alu -9 303 1 1785 162 0 0 chr13 23391287 23391553 -78481616 - AluJb SINE Alu -25 287 22 1611 174 0 25 chr13 23391866 23392142 -78481027 - AluJb SINE Alu -43 269 1 1706 197 89 11 chr13 23392211 23392571 -78480598 + MLT1B LTR MaLR 1 388 -2 2286 98 20 0 chr13 23392776 23393071 -78480098 + AluSp SINE Alu 1 301 -12 3132 247 60 40 chr13 23393817 23395450 -78477719 + L1MEc LINE L1 201 1960 -4436 2178 217 99 73 chr13 23395419 23395739 -78477430 + L1MEc LINE L1 3161 3471 -2744 * 2407 106 0 0 chr13 23395739 23396042 -78477127 + AluSq SINE Alu 1 303 -10 2178 217 99 73 chr13 23396042 23396474 -78476695 + L1MEc LINE L1 3471 3944 -2271 2031 68 4 0 chr13 23396474 23396723 -78476446 + AluY SINE Alu 60 309 -2 2178 217 99 73 chr13 23396723 23396889 -78476280 + L1MEc LINE L1 3944 4104 -2111 368 191 12 0 chr13 23396885 23396969 -78476200 + L1M4 LINE L1 4975 5059 -1087 * 343 239 209 0 chr13 23397460 23397594 -78475575 - MIR SINE MIR -27 235 74 2309 91 3 0 chr13 23398467 23398765 -78474404 - AluY SINE Alu -12 299 1 414 239 178 17 chr13 23399188 23399461 -78473708 + MLT1J2 LTR MaLR 4 329 -117 1883 181 12 35 chr13 23399718 23400117 -78473052 + MLT1B LTR MaLR 1 390 0 208 309 89 32 chr13 23401587 23401710 -78471459 - L2 LINE L2 0 3313 3184 2689 29 3 19 chr13 23401727 23402043 -78471126 + AluY SINE Alu 1 311 0 583 299 64 0 chr13 23403112 23403299 -78469870 + MIR SINE MIR 28 226 -36 276 212 40 61 chr13 23404012 23404111 -78469058 - MIR SINE MIR -91 117 21 399 232 36 51 chr13 23404212 23404350 -78468819 - L2 LINE L2 -24 3289 3154 243 0 0 0 chr13 23405321 23405348 -78467821 + (T)n Simple_repeat Simple_repeat 1 27 0 1648 209 71 23 chr13 23405761 23406154 -78467015 - MLT2D LTR ERVL 0 414 3 405 0 0 0 chr13 23406207 23406252 -78466917 + (CA)n Simple_repeat Simple_repeat 1 45 0 243 0 0 0 chr13 23406490 23406517 -78466652 + (CA)n Simple_repeat Simple_repeat 1 27 0 658 213 72 23 chr13 23406532 23406753 -78466416 + MIR SINE MIR 1 232 -30 228 67 0 0 chr13 23407032 23407062 -78466107 + (T)n Simple_repeat Simple_repeat 1 30 0 444 212 174 65 chr13 23407627 23407811 -78465358 - MIR SINE MIR -3 259 56 614 281 51 41 chr13 23408010 23408402 -78464767 - L1ME4a LINE L1 -20 6101 5706 836 150 0 0 chr13 23408408 23408541 -78464628 + L1MA8 LINE L1 6154 6286 -5 26 0 0 0 chr13 23408541 23408567 -78464602 + AT_rich Low_complexity Low_complexity 1 26 0 240 301 26 53 chr13 23410112 23410225 -78462944 - MIR SINE MIR -62 146 37 2895 167 93 66 chr13 23411714 23412422 -78460747 + LTR8A LTR ERV1 1 727 0 612 321 5 27 chr13 23412422 23412646 -78460523 + HUERS-P1 LTR ERV1 1 219 -6044 4641 182 81 45 chr13 23412730 23413981 -78459188 + HUERS-P1 LTR ERV1 364 1615 -4648 3239 219 75 80 chr13 23413968 23414142 -78459027 + MER83B-int LTR ERV1 768 941 -5551 * 225 0 0 0 chr13 23414142 23414167 -78459002 + (TAA)n Simple_repeat Simple_repeat 1 25 0 3239 219 75 80 chr13 23414167 23414769 -78458400 + MER83B-int LTR ERV1 941 1544 -4948 2165 137 0 0 chr13 23414769 23415068 -78458101 - AluSx SINE Alu -13 299 1 3239 219 75 80 chr13 23415068 23416022 -78457147 + MER83B-int LTR ERV1 1544 3409 -3083 234 184 20 0 chr13 23416023 23416072 -78457097 + MER34C LTR ERV1 170 219 -366 4316 145 16 20 chr13 23416121 23417052 -78456117 + MER83B-int LTR ERV1 1843 3016 -1864 2100 140 0 0 chr13 23417052 23417344 -78455825 + AluSx SINE Alu 1 292 -20 1942 146 0 3 chr13 23417585 23417872 -78455297 - AluJb SINE Alu -16 296 11 5152 221 27 22 chr13 23417890 23418903 -78454266 - L1M4 LINE L1 -1480 4666 3644 1467 88 48 0 chr13 23418903 23419131 -78454038 - L1MA5A LINE L1 -4 6293 6055 5152 221 27 22 chr13 23419131 23419470 -78453699 - L1M4 LINE L1 -2502 3644 3308 723 173 53 132 chr13 23419480 23419608 -78453561 - Charlie2 DNA MER1_type -70 2792 2655 2306 95 7 0 chr13 23419608 23419902 -78453267 + AluSc SINE Alu 1 296 -13 723 173 53 132 chr13 23419902 23420024 -78453145 - Charlie2 DNA MER1_type -207 2655 2574 806 139 46 0 chr13 23420024 23420175 -78452994 - L1MA8 LINE L1 0 6291 6134 723 173 53 132 chr13 23420175 23420265 -78452904 - Charlie2 DNA MER1_type -288 2574 2478 1827 202 16 21 chr13 23420278 23420708 -78452461 - Charlie2 DNA MER1_type -579 2283 1856 730 276 98 20 chr13 23420711 23421008 -78452161 - Charlie2 DNA MER1_type -2538 324 5 1169 221 18 27 chr13 23421025 23421403 -78451766 - L2 LINE L2 -263 3050 2676 376 327 133 15 chr13 23421738 23422129 -78451040 - LTR16A1 LTR ERVL -5 452 16 678 212 150 49 chr13 23422748 23423135 -78450034 + L1MC5 LINE L1 7506 7931 -30 208 239 138 138 chr13 23424876 23424985 -78448184 - L2 LINE L2 -18 3254 3146 287 284 39 0 chr13 23425081 23425183 -78447986 - MIR SINE MIR -65 197 92 1764 163 153 12 chr13 23425805 23426210 -78446959 - MLT1C LTR MaLR 0 467 6 188 345 72 58 chr13 23426544 23426588 -78446581 - L2 LINE L2 0 3272 3230 2221 96 10 0 chr13 23426588 23426879 -78446290 - AluSp SINE Alu -19 294 1 188 345 72 58 chr13 23426879 23426973 -78446196 - L2 LINE L2 -42 3230 3132 1848 135 39 7 chr13 23427318 23427621 -78445548 - AluSx SINE Alu 0 312 1 1817 161 3 10 chr13 23427725 23428029 -78445140 + AluJo SINE Alu 9 310 -2 1039 242 206 32 chr13 23428778 23429240 -78443929 - MLT1G LTR MaLR -2 588 47 236 208 0 52 chr13 23429777 23429854 -78443315 + GA-rich Low_complexity Low_complexity 3 75 0 3911 79 20 4 chr13 23430599 23431104 -78442065 - L1PA10 LINE L1 -4 6164 5652 3883 96 13 8 chr13 23431104 23431955 -78441214 + L1PA10 LINE L1 4795 5646 -522 * 4719 161 25 26 chr13 23431953 23433260 -78439909 - L1MB8 LINE L1 -5 6173 4869 323 65 0 0 chr13 23433291 23433337 -78439832 - L1MB4 LINE L1 -7 6173 6128 1682 147 68 0 chr13 23433346 23433640 -78439529 - AluJb SINE Alu 0 312 1 721 221 51 32 chr13 23433734 23433951 -78439218 - MIR SINE MIR -32 230 10 416 266 260 16 chr13 23433972 23434164 -78439005 - MIR SINE MIR -21 241 3 203 259 37 62 chr13 23434607 23434688 -78438481 - MIR3 SINE MIR -39 169 91 2402 93 0 3 chr13 23435084 23435386 -78437783 + AluSc SINE Alu 1 301 -8 357 235 174 0 chr13 23437691 23437789 -78435380 - MIR SINE MIR -101 161 47 180 0 0 0 chr13 23438316 23438336 -78434833 + (A)n Simple_repeat Simple_repeat 1 20 0 249 56 111 0 chr13 23438474 23438510 -78434659 + L1MA6 LINE L1 6160 6199 -101 516 174 10 0 chr13 23438707 23438805 -78434364 + L1MA5 LINE L1 6202 6300 0 210 200 346 85 chr13 23438814 23438944 -78434225 + MER5A DNA MER1_type 26 189 0 1887 145 3 7 chr13 23439293 23439576 -78433593 + AluJo SINE Alu 6 287 -25 414 259 71 0 chr13 23439786 23439898 -78433271 + MIR3 SINE MIR 37 156 -52 1943 156 0 13 chr13 23440947 23441255 -78431914 + AluJo SINE Alu 1 304 -8 1975 140 0 17 chr13 23442268 23442561 -78430608 + AluSx SINE Alu 1 288 -24 2027 142 0 3 chr13 23445157 23445452 -78427717 - AluSx SINE Alu -18 294 1 391 308 140 14 chr13 23447953 23448167 -78425002 + MER112 DNA MER1_type 3 243 -17 270 0 0 0 chr13 23448901 23448931 -78424238 + (TG)n Simple_repeat Simple_repeat 1 30 0 1631 162 0 80 chr13 23449619 23449933 -78423236 - AluJb SINE Alu -23 289 1 12783 121 35 50 chr13 23450118 23452299 -78420870 + Tigger1 DNA MER2_type 272 2418 0 619 294 20 15 chr13 23453777 23453981 -78419188 - MIR SINE MIR -46 216 12 255 289 13 0 chr13 23455592 23455668 -78417501 - MER103 DNA DNA -77 89 13 224 170 19 0 chr13 23456550 23456603 -78416566 + (TTCTG)n Simple_repeat Simple_repeat 2 55 0 360 336 79 0 chr13 23458279 23458419 -78414750 - MIR SINE MIR -100 162 12 1338 192 0 33 chr13 23459047 23459323 -78413846 - AluJo SINE Alu -45 267 1 334 26 0 0 chr13 23460204 23460243 -78412926 - L1PA8 LINE L1 -7 6165 6127 1607 58 0 0 chr13 23463211 23463400 -78409769 - L1PA5 LINE L1 -6 6148 5960 186 71 0 0 chr13 23464250 23464278 -78408891 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2170 86 7 4 chr13 23464281 23464559 -78408610 - AluSc SINE Alu -30 279 1 792 169 0 0 chr13 23464681 23464805 -78408364 + FLAM_C SINE Alu 3 126 -17 290 325 25 0 chr13 23465685 23465765 -78407404 + MIR3 SINE MIR 108 189 -19 2239 106 0 0 chr13 23466610 23466902 -78406267 - AluSg SINE Alu -18 292 1 293 245 92 61 chr13 23467116 23467214 -78405955 + MIR SINE MIR 92 192 -70 230 165 52 52 chr13 23467804 23467901 -78405268 - Charlie7 DNA MER1_type -78 2534 2438 2306 87 0 7 chr13 23467911 23468210 -78404959 + AluSg SINE Alu 1 297 -13 189 247 62 37 chr13 23468845 23468926 -78404243 - MIR SINE MIR -49 213 131 * 288 247 100 108 chr13 23468911 23469170 -78403999 - L2 LINE L2 -4 3268 3012 181 301 142 9 chr13 23469284 23469397 -78403772 + L2 LINE L2 3141 3268 -4 225 0 0 0 chr13 23471776 23471801 -78401368 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 2350 230 76 10 chr13 23472703 23473298 -78399871 + MER69 DNA AcHobo 56 689 -537 555 168 90 13 chr13 23473330 23473485 -78399684 + MER69 DNA AcHobo 1652 1818 -708 246 116 0 0 chr13 23474285 23474328 -78398841 + (TG)n Simple_repeat Simple_repeat 1 43 0 232 387 45 9 chr13 23474457 23474568 -78398601 - L2 LINE L2 -14 3258 3144 324 0 0 0 chr13 23475423 23475459 -78397710 + (TG)n Simple_repeat Simple_repeat 2 37 0 186 43 0 0 chr13 23475920 23475943 -78397226 + (ATG)n Simple_repeat Simple_repeat 1 23 0 314 353 8 17 chr13 23476031 23476150 -78397019 - MIR SINE MIR -143 119 2 3942 126 42 11 chr13 23476373 23477014 -78396155 - L1MA5 LINE L1 0 6300 5640 2964 81 8 0 chr13 23477205 23477577 -78395592 - THE1C LTR MaLR 0 375 1 2502 78 0 0 chr13 23478156 23478465 -78394704 - AluY SINE Alu -2 309 1 2134 129 20 0 chr13 23478846 23479149 -78394020 - AluSp SINE Alu -4 309 1 31 0 0 0 chr13 23479290 23479321 -78393848 + AT_rich Low_complexity Low_complexity 1 31 0 212 345 95 55 chr13 23479701 23480049 -78393120 - L2 LINE L2 -48 3224 2863 213 213 0 0 chr13 23480084 23480131 -78393038 + (TG)n Simple_repeat Simple_repeat 2 48 0 1029 108 27 0 chr13 23480167 23480315 -78392854 + L1PA7 LINE L1 6002 6153 -1 614 293 167 0 chr13 23480949 23481284 -78391885 + LTR16A LTR ERVL 57 447 -3 384 272 64 50 chr13 23481416 23481578 -78391591 + MIR SINE MIR 1 162 -67 242 220 20 0 chr13 23482028 23482078 -78391091 + L2 LINE L2 3217 3267 -5 1943 183 83 15 chr13 23482748 23483207 -78389962 + L1MD1 LINE L1 5746 6235 -7 275 219 31 0 chr13 23483208 23483272 -78389897 - Charlie8 DNA MER1_type -2140 277 212 234 0 0 0 chr13 23483815 23483841 -78389328 + (TC)n Simple_repeat Simple_repeat 2 27 0 228 184 0 0 chr13 23483864 23483913 -78389256 + GA-rich Low_complexity Low_complexity 2 50 0 1152 223 20 24 chr13 23484142 23484389 -78388780 + MIR SINE MIR 16 261 -1 297 311 78 0 chr13 23484925 23485028 -78388141 + MIR SINE MIR 43 153 -55 726 235 93 0 chr13 23485058 23485220 -78387949 - MER45A DNA AcHobo -1 177 1 2245 112 3 6 chr13 23485312 23485625 -78387544 - AluSx SINE Alu 0 312 1 2470 166 24 7 chr13 23486035 23486452 -78386717 - MSTB LTR MaLR 0 426 3 203 268 0 0 chr13 23486984 23487025 -78386144 + polypurine Low_complexity Low_complexity 4 44 0 24 0 0 0 chr13 23487575 23487599 -78385570 + AT_rich Low_complexity Low_complexity 1 24 0 348 282 43 91 chr13 23488077 23488286 -78384883 - MIR SINE MIR -50 212 14 2353 91 3 0 chr13 23489596 23489904 -78383265 + AluSx SINE Alu 1 309 -3 499 278 75 12 chr13 23489934 23490107 -78383062 + MIR SINE MIR 39 222 -40 1877 128 7 34 chr13 23490714 23491042 -78382127 + AluJo SINE Alu 3 312 0 571 303 72 5 chr13 23491199 23491394 -78381775 - MIR SINE MIR -51 211 4 325 316 87 52 chr13 23491466 23491893 -78381276 + L2 LINE L2 2830 3271 -1 282 329 58 19 chr13 23492139 23492294 -78380875 - MIR3 SINE MIR -37 171 11 201 320 138 22 chr13 23492948 23493129 -78380040 - MIR3 SINE MIR -4 204 3 598 299 119 29 chr13 23493462 23494130 -78379039 + L2 LINE L2 2231 3226 -87 397 230 158 48 chr13 23494877 23495100 -78378069 - MIR SINE MIR -11 251 14 340 209 15 0 chr13 23495139 23495206 -78377963 + MER81 DNA DNA 40 107 -7 2008 132 148 8 chr13 23495480 23495852 -78377317 + MSTA LTR MaLR 1 424 -4 271 269 0 77 chr13 23496501 23496605 -78376564 + MER5A DNA MER1_type 94 189 0 300 308 81 75 chr13 23497130 23497490 -78375679 + L2 LINE L2 2911 3272 0 190 250 0 58 chr13 23498357 23498409 -78374760 - MIR SINE MIR -108 154 106 1431 94 5 28 chr13 23500732 23500944 -78372225 + AluJb SINE Alu 86 292 -20 334 312 47 53 chr13 23501325 23501495 -78371674 + L1MDa LINE L1 2473 2641 -3899 225 229 0 21 chr13 23501682 23501730 -78371439 + L2 LINE L2 3150 3196 -76 521 213 0 9 chr13 23501985 23502093 -78371076 + MIR SINE MIR 36 142 -120 261 0 0 0 chr13 23502094 23502123 -78371046 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 2292 264 123 45 chr13 23502124 23502842 -78370327 - L2 LINE L2 -8 3305 2645 2453 93 0 0 chr13 23502842 23503152 -78370017 - AluSx SINE Alu -2 310 1 2292 264 123 45 chr13 23503152 23503695 -78369474 - L2 LINE L2 -668 2645 1938 209 242 21 116 chr13 23503687 23503782 -78369387 + MIR SINE MIR 177 262 0 * 2673 140 20 40 chr13 23503889 23504331 -78368838 + MER31A LTR ERV1 2 434 -51 1854 109 80 14 chr13 23504331 23504607 -78368562 - AluSx SINE Alu -16 296 3 2673 140 20 40 chr13 23504607 23504658 -78368511 + MER31A LTR ERV1 434 485 0 910 264 104 4 chr13 23505091 23505322 -78367847 + MIR SINE MIR 9 262 0 347 353 38 61 chr13 23505966 23506067 -78367102 + MIR SINE MIR 2 104 -158 2054 122 36 42 chr13 23506067 23506403 -78366766 - MER1B DNA MER1_type 0 337 4 347 353 38 61 chr13 23506403 23506562 -78366607 + MIR SINE MIR 104 256 -6 279 345 81 21 chr13 23506604 23506888 -78366281 + L2 LINE L2 2308 2608 -706 229 325 56 19 chr13 23506961 23507121 -78366048 + L2 LINE L2 2836 3001 -312 234 320 131 0 chr13 23507768 23507890 -78365279 - MIR3 SINE MIR -68 140 3 313 345 0 0 chr13 23508504 23508614 -78364555 + (TG)n Simple_repeat Simple_repeat 1 110 0 935 114 8 0 chr13 23508794 23508926 -78364243 + FLAM_C SINE Alu 1 133 0 214 204 61 0 chr13 23509270 23509319 -78363850 + L2 LINE L2 3205 3256 -16 226 180 0 66 chr13 23509399 23509460 -78363709 + Charlie7 DNA MER1_type 45 101 -2511 225 200 140 0 chr13 23509453 23509553 -78363616 + Charlie7 DNA MER1_type 2430 2543 -69 * 254 134 6 29 chr13 23509714 23509753 -78363416 - MLT2B2 LTR ERVL 0 515 477 492 62 0 0 chr13 23509753 23509817 -78363352 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 950 143 6 0 chr13 23509823 23509998 -78363171 + (TGGA)n Simple_repeat Simple_repeat 2 177 0 254 134 6 29 chr13 23509998 23510014 -78363155 - MLT2B2 LTR ERVL -23 492 477 805 157 4 4 chr13 23510027 23510273 -78362896 + (TGGA)n Simple_repeat Simple_repeat 1 246 0 1377 178 62 2 chr13 23510288 23510659 -78362510 - MLT2B2 LTR ERVL -42 473 2 410 338 111 0 chr13 23511140 23511338 -78361831 - MIR SINE MIR -12 250 31 229 347 93 13 chr13 23511365 23511515 -78361654 + L3 LINE CR1 1193 1354 -223 597 14 0 0 chr13 23511570 23511640 -78361529 + (TTATG)n Simple_repeat Simple_repeat 2 71 0 395 264 0 0 chr13 23511750 23511837 -78361332 + L2 LINE L2 3186 3272 0 1691 76 27 4 chr13 23512046 23512271 -78360898 - MER30 DNA MER1_type 0 230 1 646 111 0 2 chr13 23512833 23513069 -78360100 + AluSx SINE Alu 1 284 -25 1764 261 66 16 chr13 23513080 23513629 -78359540 + L1MEc LINE L1 35 610 -5786 2113 204 45 12 chr13 23513630 23514133 -78359036 + L1ME2 LINE L1 5141 5674 -492 1970 191 39 34 chr13 23514133 23514598 -78358571 - MLT1C LTR MaLR 0 467 1 2113 204 45 12 chr13 23514598 23514712 -78358457 + L1ME2 LINE L1 5674 5783 -383 5570 123 52 120 chr13 23514714 23514925 -78358244 + Tigger3b DNA MER2_type 2 226 -2802 2067 128 25 0 chr13 23514925 23515245 -78357924 + L1PB1 LINE L1 5824 6151 0 5570 123 52 120 chr13 23515245 23515842 -78357327 + Tigger3b DNA MER2_type 226 862 -2166 2078 140 0 0 chr13 23515842 23516142 -78357027 - AluSx SINE Alu -12 300 1 5570 123 52 120 chr13 23516142 23516215 -78356954 + Tigger3b DNA MER2_type 862 938 -2090 1921 158 0 34 chr13 23516215 23516538 -78356631 + AluJo SINE Alu 1 312 0 5570 123 52 120 chr13 23516538 23516974 -78356195 + Tigger3b DNA MER2_type 938 1231 0 866 196 116 40 chr13 23516982 23517100 -78356069 + L1ME2 LINE L1 5789 5897 -267 2237 120 0 0 chr13 23517100 23517391 -78355778 + AluSx SINE Alu 1 291 -21 866 196 116 40 chr13 23517391 23517548 -78355621 + L1ME2 LINE L1 5897 6085 -79 1824 173 131 52 chr13 23517548 23518006 -78355163 - MLT1D LTR MaLR 0 505 12 315 158 40 13 chr13 23518009 23518085 -78355084 + L1ME1 LINE L1 6084 6161 -5 2111 143 0 3 chr13 23518278 23518585 -78354584 - AluSx SINE Alu -6 306 1 803 152 49 12 chr13 23518847 23519011 -78354158 - L1MB1 LINE L1 -1 6167 5998 321 89 0 0 chr13 23519440 23519485 -78353684 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 180 111 0 0 chr13 23520048 23520075 -78353094 + (TG)n Simple_repeat Simple_repeat 1 27 0 215 152 0 136 chr13 23520838 23520904 -78352265 - L2 LINE L2 -5 3308 3252 314 306 106 42 chr13 23522154 23522268 -78350901 - L1 LINE L1 -1518 4628 4523 2159 131 7 0 chr13 23522268 23522565 -78350604 - AluSg SINE Alu -11 299 1 314 306 106 42 chr13 23522565 23522734 -78350435 - L1 LINE L1 -1623 4523 4327 1968 106 53 0 chr13 23522806 23523090 -78350079 - AluSc SINE Alu 0 298 1 481 333 78 16 chr13 23523372 23523630 -78349539 + L1M4 LINE L1 3665 3938 -2208 1942 154 3 0 chr13 23524396 23524689 -78348480 + AluJb SINE Alu 3 296 -16 655 205 145 6 chr13 23525073 23525239 -78347930 - MER5A DNA MER1_type 0 189 1 337 263 112 50 chr13 23529896 23530155 -78343014 - L2 LINE L2 -69 3244 2970 236 121 0 0 chr13 23530219 23530251 -78342918 - MLT1C LTR MaLR -2 465 434 3020 178 72 34 chr13 23530251 23530966 -78342203 + Tigger7 DNA MER2_type 1 2566 -21 467 131 9 0 chr13 23530968 23531048 -78342121 - MLT1C LTR MaLR -60 407 245 234 229 0 0 chr13 23531048 23531118 -78342051 + CT-rich Low_complexity Low_complexity 2 71 0 1234 38 5 32 chr13 23531124 23531309 -78341860 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1926 140 0 0 chr13 23531364 23531635 -78341534 - AluSx SINE Alu -41 271 1 1641 127 156 16 chr13 23531635 23531943 -78341226 - MLT1C LTR MaLR -115 352 2 1833 97 4 16 chr13 23532255 23532594 -78340575 - AluSx SINE Alu 0 374 39 25 0 0 0 chr13 23532605 23532630 -78340539 + AT_rich Low_complexity Low_complexity 1 25 0 236 147 0 0 chr13 23533022 23533056 -78340113 - AluSx SINE Alu -265 34 1 243 0 0 0 chr13 23535319 23535346 -78337823 + (CA)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr13 23536534 23536560 -78336609 + AT_rich Low_complexity Low_complexity 1 26 0 926 105 0 15 chr13 23538136 23538269 -78334900 + FLAM_C SINE Alu 1 131 -2 403 294 72 6 chr13 23538969 23539149 -78334020 + MIR SINE MIR 69 260 -2 550 197 126 27 chr13 23541141 23541324 -78331845 - MIR SINE MIR -19 243 43 1858 108 104 7 chr13 23541744 23542023 -78331146 - AluSq SINE Alu -7 306 1 2359 93 0 0 chr13 23542339 23542639 -78330530 - AluY SINE Alu -11 300 1 213 121 0 0 chr13 23544632 23544665 -78328504 + (TG)n Simple_repeat Simple_repeat 2 34 0 333 182 50 50 chr13 23549370 23549469 -78323700 - MER63D DNA MER1_type -650 411 313 1709 130 0 112 chr13 23550635 23550991 -78322178 - AluSx SINE Alu 0 312 1 539 218 26 32 chr13 23551432 23551588 -78321581 - MER63D DNA MER1_type -118 944 790 1428 198 72 20 chr13 23551590 23551938 -78321231 - MER87 LTR ERV1 -2 539 174 255 307 114 0 chr13 23551979 23552067 -78321102 - LTR8 LTR ERV1 -567 124 27 1089 180 52 16 chr13 23552101 23552466 -78320703 - MER63D DNA MER1_type -619 442 3 244 301 88 0 chr13 23552914 23553027 -78320142 + MIR SINE MIR 128 250 -12 346 252 143 25 chr13 23553027 23553146 -78320023 - MER94 DNA DNA -1 133 1 1370 154 128 70 chr13 23553328 23553673 -78319496 + MLT1A1 LTR MaLR 1 365 0 27 92 0 0 chr13 23554715 23554791 -78318378 + AT_rich Low_complexity Low_complexity 1 76 0 2267 123 0 0 chr13 23554953 23555262 -78317907 + AluSx SINE Alu 1 309 -3 382 291 44 44 chr13 23556523 23556705 -78316464 + MER5A DNA MER1_type 7 188 -1 426 239 0 77 chr13 23556739 23556869 -78316300 - L2 LINE L2 0 3272 3153 265 193 0 36 chr13 23557841 23557924 -78315245 + CT-rich Low_complexity Low_complexity 3 82 0 453 177 15 71 chr13 23557961 23558036 -78315133 - L1ME2 LINE L1 -33 7928 7850 2231 86 0 4 chr13 23558036 23558316 -78314853 - AluSp SINE Alu -6 307 29 453 177 15 71 chr13 23558316 23558372 -78314797 - L1ME2 LINE L1 -111 7850 7792 5586 120 76 120 chr13 23558372 23558720 -78314449 - Tigger3b DNA MER2_type -1797 1231 869 209 33 33 0 chr13 23558720 23558750 -78314419 + (TGAG)n Simple_repeat Simple_repeat 4 34 0 5586 120 76 120 chr13 23558750 23559689 -78313480 - Tigger3b DNA MER2_type -2159 869 1 453 177 15 71 chr13 23559689 23559836 -78313333 - L1ME2 LINE L1 -169 7792 5828 908 186 6 6 chr13 23560012 23560184 -78312985 - AluSx SINE Alu -29 281 110 924 96 80 0 chr13 23560216 23560341 -78312828 - AluSx SINE Alu -177 135 1 2710 159 53 121 chr13 23560344 23561171 -78311998 - L1ME2 LINE L1 -343 5821 5038 992 191 79 130 chr13 23561227 23561391 -78311778 - L1MC5 LINE L1 -271 7690 7519 2285 87 28 7 chr13 23561391 23561680 -78311489 - AluSg SINE Alu -14 296 2 992 191 79 130 chr13 23561680 23561904 -78311265 - L1MC5 LINE L1 -442 7519 7285 2363 109 3 0 chr13 23561904 23562216 -78310953 - AluSq SINE Alu 0 313 1 992 191 79 130 chr13 23562216 23562382 -78310787 - L1MC5 LINE L1 -676 7285 7164 2030 129 13 23 chr13 23562382 23562691 -78310478 - AluSx SINE Alu -6 306 1 992 191 79 130 chr13 23562691 23562727 -78310442 - L1MC5 LINE L1 -797 7164 7128 569 266 39 0 chr13 23563986 23564114 -78309055 - MER94 DNA DNA 0 134 2 909 205 45 67 chr13 23564161 23564429 -78308740 + L1MC4a LINE L1 7073 7334 -474 2304 100 0 0 chr13 23564429 23564720 -78308449 - AluSx SINE Alu -21 291 1 287 257 14 0 chr13 23564967 23565041 -78308128 + MIR SINE MIR 54 128 -134 1979 192 60 12 chr13 23565041 23565457 -78307712 + L1MD3 LINE L1 7502 7937 -58 1489 168 0 82 chr13 23565458 23565621 -78307548 - AluJo SINE Alu -17 295 120 2271 118 0 0 chr13 23565621 23565917 -78307252 - AluSx SINE Alu -16 296 1 678 73 0 31 chr13 23565924 23566040 -78307129 - L1PA5 LINE L1 0 6154 6055 1489 168 0 82 chr13 23566040 23566184 -78306985 - AluJo SINE Alu -198 114 6 1592 129 3 129 chr13 23567380 23567720 -78305449 + AluJb SINE Alu 16 312 0 2424 78 3 13 chr13 23568710 23569018 -78304151 - AluSg SINE Alu -5 305 1 304 324 171 0 chr13 23569144 23569320 -78303849 - MIR SINE MIR -55 207 2 312 171 14 0 chr13 23569465 23569535 -78303634 - L1MB8 LINE L1 0 6178 6108 2238 102 0 3 chr13 23569577 23569882 -78303287 - AluSx SINE Alu 0 304 1 41 0 0 0 chr13 23570187 23570228 -78302941 + AT_rich Low_complexity Low_complexity 1 41 0 338 164 0 0 chr13 23570387 23570448 -78302721 - AluSx SINE Alu 0 301 241 1539 100 5 0 chr13 23570448 23570648 -78302521 - AluSx SINE Alu -111 201 1 377 172 115 8 chr13 23570787 23570909 -78302260 - L1MC5 LINE L1 -218 7743 7609 414 216 0 90 chr13 23570922 23570995 -78302174 - L1MB8 LINE L1 -7 6171 6114 2259 96 3 0 chr13 23570995 23571286 -78301883 - AluSc SINE Alu -17 292 1 414 216 0 90 chr13 23571286 23571346 -78301823 - L1MB8 LINE L1 -64 6114 6050 * 2630 220 46 86 chr13 23571342 23571775 -78301394 - L1MC5 LINE L1 -369 7592 7143 2028 105 64 17 chr13 23571775 23572071 -78301098 - AluSg SINE Alu 0 310 1 2630 220 46 86 chr13 23572071 23572886 -78300283 - L1MC5 LINE L1 -818 7143 6377 183 42 0 0 chr13 23572908 23572932 -78300237 + (TTG)n Simple_repeat Simple_repeat 2 25 0 690 146 31 39 chr13 23572975 23573105 -78300064 - FLAM_A SINE Alu -4 129 1 547 205 26 19 chr13 23573188 23573344 -78299825 - L1MB8 LINE L1 0 6178 6022 2715 221 66 4 chr13 23573344 23573970 -78299199 - L1M4 LINE L1 -1234 4912 4235 270 0 0 0 chr13 23573970 23574000 -78299169 + (TG)n Simple_repeat Simple_repeat 2 31 0 2715 221 66 4 chr13 23574000 23574087 -78299082 - L1M4 LINE L1 -1911 4235 4155 287 193 0 18 chr13 23574130 23574187 -78298982 - L1M4 LINE L1 -1984 4162 4107 * 10566 158 51 22 chr13 23574174 23574399 -78298770 - L1MC3 LINE L1 -47 7738 7521 2461 81 3 0 chr13 23574399 23574707 -78298462 - AluSp SINE Alu -4 309 1 10566 158 51 22 chr13 23574707 23576226 -78296943 - L1MC3 LINE L1 -264 7521 5925 2152 124 3 13 chr13 23576226 23576540 -78296629 - AluSq SINE Alu -2 311 1 10566 158 51 22 chr13 23576540 23576808 -78296361 - L1MC3 LINE L1 -1860 5925 5666 546 223 13 19 chr13 23576811 23576968 -78296201 - AluSg/x SINE Alu -16 296 141 2378 108 0 9 chr13 23627937 23628252 -78244917 - AluSx SINE Alu 0 312 1 180 316 118 15 chr13 23628495 23628631 -78244538 + L2 LINE L2 2716 2865 -449 226 365 9 26 chr13 23629434 23629594 -78243575 - MIR SINE MIR -17 191 34 338 204 64 30 chr13 23630034 23630175 -78242994 + MLT1H LTR MaLR 250 549 0 1606 190 133 3 chr13 23631374 23631743 -78241426 + Charlie4a DNA MER1_type 5 421 -87 26 0 0 0 chr13 23632298 23632324 -78240845 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr13 23632957 23632981 -78240188 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1690 166 16 7 chr13 23633427 23633734 -78239435 + AluJb SINE Alu 1 310 -2 1623 143 136 10 chr13 23634265 23634566 -78238603 + MER44D DNA MER2_type 1 609 0 840 282 145 28 chr13 23636721 23636892 -78236277 - L2 LINE L2 -3 3310 3161 2009 98 36 0 chr13 23636892 23637166 -78236003 + AluSx SINE Alu 1 284 -28 441 0 0 0 chr13 23637166 23637215 -78235954 + (CATA)n Simple_repeat Simple_repeat 2 50 0 840 282 145 28 chr13 23637215 23637792 -78235377 - L2 LINE L2 -151 3162 2469 2241 83 38 0 chr13 23638801 23639091 -78234078 + AluSp SINE Alu 1 301 -12 1627 148 37 30 chr13 23639715 23640013 -78233156 - AluJb SINE Alu -12 300 1 2097 108 9 32 chr13 23640642 23640957 -78232212 + AluSq SINE Alu 1 308 -5 2233 102 3 0 chr13 23642437 23642732 -78230437 - AluSx SINE Alu -13 299 4 232 298 99 33 chr13 23644289 23644410 -78228759 + MIR SINE MIR 134 262 0 631 266 48 29 chr13 23645220 23645427 -78227742 + L3 LINE CR1 937 1147 -430 1604 141 59 59 chr13 23645457 23645763 -78227406 + AluJo SINE Alu 1 306 -6 198 0 0 0 chr13 23645955 23645977 -78227192 + (A)n Simple_repeat Simple_repeat 1 22 0 423 62 62 0 chr13 23647232 23647297 -78225872 + MER41A LTR ERV1 400 468 -86 200 35 35 0 chr13 23647608 23647637 -78225532 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 805 139 9 0 chr13 23647639 23647754 -78225415 - FLAM_C SINE Alu -17 116 1 587 275 85 19 chr13 23648930 23649188 -78223981 + L1MC4 LINE L1 7501 7775 -267 1272 131 10 5 chr13 23649188 23649387 -78223782 + AluSq SINE Alu 1 200 -113 1829 160 4 0 chr13 23649577 23649858 -78223311 - AluSx SINE Alu -30 282 1 337 200 76 38 chr13 23650222 23650327 -78222842 + MER34 LTR ERV1 434 542 0 28 29 0 0 chr13 23651802 23651837 -78221332 + AT_rich Low_complexity Low_complexity 1 35 0 4435 86 2 9 chr13 23652061 23652619 -78220550 - MER41A LTR ERV1 0 554 1 2068 118 0 60 chr13 23652895 23653226 -78219943 - AluSx SINE Alu -1 311 1 712 205 0 0 chr13 23653249 23653376 -78219793 - FLAM_A SINE Alu 0 142 16 229 153 31 20 chr13 23653791 23653889 -78219280 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 605 109 43 0 chr13 23654441 23654533 -78218636 - AluSg/x SINE Alu -9 303 208 1100 108 13 0 chr13 23654533 23654691 -78218478 - AluSq SINE Alu -153 160 1 2188 113 3 3 chr13 23655120 23655421 -78217748 - AluSg SINE Alu -9 301 1 2065 113 0 78 chr13 23656345 23656680 -78216489 + AluSg1 SINE Alu 1 309 0 2102 111 3 44 chr13 23657203 23657519 -78215650 + AluSx SINE Alu 1 303 -9 1662 163 37 23 chr13 23657784 23658084 -78215085 - AluSx SINE Alu -6 306 3 1824 81 0 13 chr13 23658983 23659219 -78213950 - AluY SINE Alu -15 296 64 1880 146 0 50 chr13 23659460 23659783 -78213386 - AluSx SINE Alu -5 307 1 303 296 95 37 chr13 23660493 23660682 -78212487 - L2 LINE L2 -837 2477 2278 2477 72 0 10 chr13 23660877 23661183 -78211986 + AluY SINE Alu 1 303 -8 2340 90 30 0 chr13 23661193 23661494 -78211675 + AluSg SINE Alu 1 310 0 866 179 0 19 chr13 23662936 23663139 -78210030 + AluSg/x SINE Alu 127 326 0 1875 127 3 68 chr13 23663424 23663746 -78209423 - AluSx SINE Alu -11 301 1 2259 112 3 0 chr13 23664041 23664346 -78208823 + AluSg SINE Alu 1 306 -4 22 35 0 0 chr13 23665352 23665381 -78207788 + AT_rich Low_complexity Low_complexity 1 29 0 2226 72 0 0 chr13 23666142 23666421 -78206748 + AluSc SINE Alu 1 279 -30 386 222 48 56 chr13 23666659 23666785 -78206384 - L1 LINE L1 -1153 4993 4867 2224 136 107 3 chr13 23666785 23667167 -78206002 - MSTC LTR MaLR 0 428 7 2845 102 6 3 chr13 23667167 23667530 -78205639 + THE1B LTR MaLR 1 364 0 519 281 45 30 chr13 23667533 23667800 -78205369 - L1 LINE L1 -1270 4876 4606 2325 90 3 0 chr13 23667805 23668105 -78205064 + AluSq SINE Alu 5 305 -8 324 305 0 0 chr13 23668115 23668210 -78204959 + L1MC4 LINE L1 7770 7864 -178 351 248 64 8 chr13 23668287 23668434 -78204735 + L1MC4 LINE L1 5936 8042 0 536 240 55 7 chr13 23668461 23668607 -78204562 + L1MA10 LINE L1 6175 6327 -7 306 0 0 0 chr13 23668607 23668641 -78204528 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 158 42 0 chr13 23668877 23668925 -78204244 + MIR SINE MIR 97 148 -62 2484 64 3 0 chr13 23669395 23669692 -78203477 - AluSp SINE Alu -15 298 1 1583 144 31 0 chr13 23669750 23669979 -78203190 - MER46A DNA MER2_type 0 236 1 2000 124 13 3 chr13 23670623 23670921 -78202248 + AluSx SINE Alu 1 301 -11 1172 183 8 12 chr13 23671516 23671757 -78201412 + L1MC/D LINE L1 4948 5187 -959 2224 150 136 20 chr13 23671758 23672206 -78200963 + L1MB3 LINE L1 5684 6183 0 2323 104 0 0 chr13 23672240 23672547 -78200622 + AluY SINE Alu 1 307 -4 2622 183 44 18 chr13 23672547 23673044 -78200125 - MST-int LTR MaLR -49 1686 1089 842 196 20 110 chr13 23673035 23673204 -78199965 - L1MC4a LINE L1 -857 6951 6768 * 234 0 0 0 chr13 23673204 23673230 -78199939 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2059 124 0 0 chr13 23673233 23673506 -78199663 - AluSg SINE Alu -30 280 8 842 196 20 110 chr13 23673506 23673577 -78199592 - L1MC4a LINE L1 -1042 6766 6729 1384 121 0 73 chr13 23673578 23673810 -78199359 - AluSg/x SINE Alu -13 299 85 989 99 0 112 chr13 23673810 23673971 -78199198 - AluSq SINE Alu -63 250 108 953 138 0 0 chr13 23674071 23674201 -78198968 - AluSq SINE Alu -182 130 1 2191 133 3 0 chr13 23674212 23674520 -78198649 - AluSx SINE Alu -3 309 1 279 178 0 0 chr13 23674535 23674580 -78198589 - L1MC4a LINE L1 -1086 6722 6678 232 282 219 60 chr13 23674893 23674927 -78198242 + L1MC/D LINE L1 5385 5412 -2396 2247 108 0 0 chr13 23674927 23675251 -78197918 + AluY SINE Alu 1 311 0 232 282 219 60 chr13 23675251 23675331 -78197838 + L1MC/D LINE L1 5412 5478 -2330 2166 132 0 3 chr13 23675331 23675635 -78197534 + AluSx SINE Alu 1 303 -9 232 282 219 60 chr13 23675635 23675783 -78197386 + L1MC/D LINE L1 5478 5601 -2207 246 81 0 0 chr13 23675783 23675820 -78197349 + (TG)n Simple_repeat Simple_repeat 1 37 0 232 282 219 60 chr13 23675820 23675888 -78197281 + L1MC/D LINE L1 5601 5770 -2038 237 281 53 111 chr13 23675919 23676090 -78197079 - L2 LINE L2 -252 3061 2901 184 255 21 0 chr13 23676238 23676285 -78196884 + L2 LINE L2 3265 3312 -1 2652 154 28 9 chr13 23676360 23676820 -78196349 + Charlie4a DNA MER1_type 37 505 -3 1534 252 44 9 chr13 23677024 23677457 -78195712 + L1ME1 LINE L1 5476 5923 -243 8040 33 0 0 chr13 23677462 23678485 -78194684 - L1PA3 LINE L1 0 6155 5133 7869 40 0 1 chr13 23678485 23679428 -78193741 + L1PA3 LINE L1 4220 5161 -985 374 230 82 59 chr13 23679557 23679692 -78193477 + L1MA10 LINE L1 6192 6329 -5 429 56 0 0 chr13 23680101 23680155 -78193014 + Alu SINE Alu 245 298 -13 1960 99 64 7 chr13 23680364 23680647 -78192522 - AluSp SINE Alu -14 299 1 211 200 83 17 chr13 23682503 23682563 -78190606 + MIR SINE MIR 91 154 -108 2367 119 0 0 chr13 23683077 23683389 -78189780 - AluSx SINE Alu 0 312 1 1469 186 42 11 chr13 23683527 23683812 -78189357 - AluJb SINE Alu -18 294 1 486 259 129 40 chr13 23684258 23684439 -78188730 - MIR SINE MIR -6 256 49 2045 140 0 3 chr13 23684439 23684746 -78188423 - AluSx SINE Alu 0 306 1 486 259 129 40 chr13 23684746 23684787 -78188382 - MIR SINE MIR -213 49 13 26 50 0 0 chr13 23685001 23685041 -78188128 + AT_rich Low_complexity Low_complexity 1 40 0 2017 134 3 3 chr13 23685365 23685696 -78187473 + AluSq SINE Alu 1 313 0 21 0 0 0 chr13 23687590 23687611 -78185558 + AT_rich Low_complexity Low_complexity 1 21 0 705 275 29 59 chr13 23687617 23687745 -78185424 - L1MC/D LINE L1 -1992 5816 5686 2040 44 48 0 chr13 23687745 23687995 -78185174 + AluY SINE Alu 41 302 -9 705 275 29 59 chr13 23687995 23688139 -78185030 - L1MC/D LINE L1 -2122 5686 5552 269 390 70 6 chr13 23688159 23688331 -78184838 - MIR3 SINE MIR -6 202 20 268 206 41 14 chr13 23688343 23688416 -78184753 - L1ME4a LINE L1 -75 6046 5972 1974 133 11 0 chr13 23688492 23688778 -78184391 + AluSx SINE Alu 1 289 -23 195 69 0 0 chr13 23688783 23688812 -78184357 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 192 97 0 0 chr13 23688881 23688912 -78184257 + (T)n Simple_repeat Simple_repeat 1 31 0 211 211 0 70 chr13 23689671 23689728 -78183441 - L2 LINE L2 -2 3270 3218 375 272 9 0 chr13 23690228 23690342 -78182827 + L1ME4a LINE L1 5716 5830 -291 1822 140 0 26 chr13 23690342 23690614 -78182555 + AluSx SINE Alu 1 265 -47 355 307 8 0 chr13 23691879 23692006 -78181163 - MIR SINE MIR -48 214 87 607 173 136 0 chr13 23692862 23692972 -78180197 + FLAM_A SINE Alu 3 127 -6 1724 120 90 0 chr13 23692982 23693248 -78179921 + AluSx SINE Alu 1 290 -22 2057 114 10 16 chr13 23694663 23694970 -78178199 + AluSx SINE Alu 7 311 -1 326 256 64 56 chr13 23694989 23695114 -78178055 + MIR SINE MIR 66 191 -71 712 169 0 59 chr13 23695117 23695246 -78177923 + AluJo/FLAM SINE Alu 2 124 -188 1942 112 98 4 chr13 23695246 23695523 -78177646 - AluSq SINE Alu -10 303 1 460 174 98 45 chr13 23695646 23695778 -78177391 - MIR SINE MIR -27 235 97 2272 79 0 4 chr13 23695890 23696170 -78176999 + AluY SINE Alu 1 279 -32 473 308 92 4 chr13 23696333 23696573 -78176596 - MIR SINE MIR 0 262 2 2259 93 0 17 chr13 23697640 23697940 -78175229 + AluSq SINE Alu 1 295 -18 838 88 0 0 chr13 23698173 23698275 -78174894 - AluS SINE Alu -211 102 1 2025 124 7 7 chr13 23698276 23698558 -78174611 - AluSq SINE Alu -31 282 1 313 75 57 19 chr13 23698558 23698611 -78174558 + MSTB-int LTR MaLR 1526 1580 0 2286 120 85 22 chr13 23698611 23698943 -78174226 + MSTB LTR MaLR 1 364 -62 2519 85 0 0 chr13 23698943 23699248 -78173921 - AluSx SINE Alu -7 305 1 2286 120 85 22 chr13 23699248 23699316 -78173853 + MSTB LTR MaLR 364 426 0 2615 198 118 31 chr13 23699318 23700002 -78173167 + L1MC4a LINE L1 6944 7708 -100 2064 107 38 0 chr13 23700002 23700291 -78172878 - AluSx SINE Alu -12 300 1 2615 198 118 31 chr13 23700291 23700401 -78172768 + L1MC4a LINE L1 7708 7807 -1 638 102 102 8 chr13 23700420 23700538 -78172631 + L1MA9 LINE L1 6162 6290 -22 27 62 0 0 chr13 23700538 23700586 -78172583 + AT_rich Low_complexity Low_complexity 1 48 0 14908 86 8 2 chr13 23700773 23703577 -78169592 - L1PA7 LINE L1 -1 6153 3332 33378 79 7 10 chr13 23703677 23709084 -78164085 + L1PA5 LINE L1 767 6154 0 2173 121 10 3 chr13 23709843 23710149 -78163020 - AluSg SINE Alu -2 308 1 2300 100 3 3 chr13 23710155 23710466 -78162703 - AluSx SINE Alu 0 312 2 2160 118 10 20 chr13 23710510 23710816 -78162353 - AluSq SINE Alu -10 303 1 986 127 0 0 chr13 23710845 23710979 -78162190 - AluSq/x SINE Alu -178 134 1 234 0 0 0 chr13 23711177 23711203 -78161966 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1182 137 6 0 chr13 23711203 23711379 -78161790 - AluJb SINE Alu -4 308 129 396 0 0 0 chr13 23711403 23711447 -78161722 + (CTTG)n Simple_repeat Simple_repeat 2 45 0 2192 114 0 0 chr13 23711466 23711774 -78161395 - AluSg SINE Alu 0 310 1 1611 92 0 32 chr13 23711798 23711878 -78161291 - AluSc SINE Alu -98 211 130 2297 72 3 62 chr13 23711878 23712199 -78160970 - AluY SINE Alu -7 304 3 1611 92 0 32 chr13 23712199 23712335 -78160834 - AluSc SINE Alu -179 130 2 36 23 0 0 chr13 23712720 23712763 -78160406 + AT_rich Low_complexity Low_complexity 1 43 0 1145 88 0 0 chr13 23712780 23712916 -78160253 - AluSq/x SINE Alu -172 141 6 2244 113 0 3 chr13 23713389 23713690 -78159479 - AluSq SINE Alu -13 300 1 373 267 166 0 chr13 23714058 23714233 -78158936 - MIR SINE MIR 0 262 55 848 160 0 0 chr13 23714307 23714432 -78158737 + FLAM_C SINE Alu 1 125 -18 2901 10 0 0 chr13 23714635 23714944 -78158225 - AluYa5 SINE Alu -2 309 1 881 206 0 0 chr13 23714946 23715106 -78158063 - FRAM SINE Alu -16 160 1 195 276 35 0 chr13 23715650 23715708 -78157461 - L2 LINE L2 -9 3263 3204 2354 122 0 0 chr13 23715933 23716245 -78156924 - AluSx SINE Alu 0 312 1 835 167 17 69 chr13 23716555 23716729 -78156440 + AluJb SINE Alu 137 301 -11 2257 92 31 0 chr13 23717120 23717412 -78155757 - AluSx SINE Alu -11 301 1 4002 185 8 19 chr13 23717468 23718269 -78154900 + L1 LINE L1 4243 5034 -1112 1756 169 10 24 chr13 23718280 23718576 -78154593 + AluJb SINE Alu 1 292 -20 207 162 0 0 chr13 23718576 23718613 -78154556 + G-rich Low_complexity Low_complexity 1 37 0 1329 173 38 21 chr13 23718684 23718921 -78154248 + AluJo SINE Alu 3 243 -69 1779 82 5 0 chr13 23718923 23719142 -78154027 + AluSp SINE Alu 76 295 -18 4976 142 93 38 chr13 23719143 23719236 -78153933 + L1PA16 LINE L1 5183 5269 -897 2180 127 0 0 chr13 23719236 23719527 -78153642 + AluSg SINE Alu 3 293 -17 4976 142 93 38 chr13 23719527 23719877 -78153292 + L1PA16 LINE L1 5269 5598 -568 2330 107 3 3 chr13 23719877 23720185 -78152984 + AluSp SINE Alu 1 308 -5 4976 142 93 38 chr13 23720185 23720349 -78152820 + L1PA16 LINE L1 5598 5751 -415 2168 122 7 0 chr13 23720349 23720643 -78152526 + AluSp SINE Alu 1 296 -17 4976 142 93 38 chr13 23720643 23720967 -78152202 + L1PA16 LINE L1 5751 6157 -9 228 207 216 36 chr13 23721161 23721272 -78151897 - MIR SINE MIR -14 248 118 2147 127 0 3 chr13 23721273 23721572 -78151597 - AluSx SINE Alu -14 298 1 1744 132 69 31 chr13 23722024 23722313 -78150856 + AluJo SINE Alu 1 300 -12 246 32 0 0 chr13 23722359 23722390 -78150779 + (CA)n Simple_repeat Simple_repeat 2 32 0 2521 14 41 7 chr13 23722752 23723042 -78150127 + AluY SINE Alu 1 300 -11 2303 92 7 0 chr13 23723091 23723385 -78149784 + AluSx SINE Alu 1 296 -16 697 207 0 7 chr13 23723399 23723539 -78149630 - AluJb SINE Alu -2 310 172 3763 163 49 57 chr13 23724286 23725128 -78148041 - L1MB8 LINE L1 0 6178 5331 1790 125 121 7 chr13 23725128 23725409 -78147760 - AluSp SINE Alu 0 313 1 1649 146 0 0 chr13 23725410 23725657 -78147512 - AluSx SINE Alu -8 304 58 3763 163 49 57 chr13 23725657 23725779 -78147390 - L1MB8 LINE L1 -846 5332 5207 1634 156 7 7 chr13 23725781 23726064 -78147105 - AluY SINE Alu -12 299 17 386 273 47 16 chr13 23726244 23726372 -78146797 + MLT1J2 LTR MaLR 262 393 -57 13010 21 0 0 chr13 23726378 23728632 -78144537 - L1PA2 LINE L1 0 6155 3902 469 185 267 56 chr13 23729202 23729364 -78143805 + MIR SINE MIR 2 215 -47 2302 79 0 24 chr13 23729364 23729705 -78143464 + AluSx SINE Alu 1 334 0 469 185 267 56 chr13 23729705 23729734 -78143435 + MIR SINE MIR 215 237 -25 1886 172 33 44 chr13 23729934 23730323 -78142846 - MLT1B LTR MaLR -5 385 1 21 0 0 0 chr13 23730506 23730527 -78142642 + AT_rich Low_complexity Low_complexity 1 21 0 821 188 0 7 chr13 23730739 23730877 -78142292 + AluJo SINE Alu 3 139 -173 2277 111 3 0 chr13 23730881 23731188 -78141981 + AluSg SINE Alu 1 308 -2 27 0 0 0 chr13 23731189 23731216 -78141953 + AT_rich Low_complexity Low_complexity 1 27 0 802 174 0 0 chr13 23731216 23731348 -78141821 + AluSq/x SINE Alu 1 132 -181 2190 89 10 29 chr13 23731350 23731663 -78141506 + AluSx SINE Alu 1 307 -5 2213 108 0 40 chr13 23731665 23731801 -78141368 + AluSq SINE Alu 1 141 -172 2578 41 0 7 chr13 23731801 23732095 -78141074 + AluY SINE Alu 1 292 -19 2213 108 0 40 chr13 23732095 23732282 -78140887 + AluSq SINE Alu 141 311 -2 2154 112 0 3 chr13 23732804 23733099 -78140070 + AluSq SINE Alu 1 294 -19 977 118 0 15 chr13 23733287 23733422 -78139747 - FLAM_C SINE Alu 0 133 1 2012 154 0 3 chr13 23733843 23734148 -78139021 + AluJo SINE Alu 1 304 -8 194 183 83 17 chr13 23734465 23734525 -78138644 - MIR SINE MIR -43 219 156 14347 134 75 113 chr13 23735132 23736336 -78136833 - L1P LINE L1 -2894 3252 2003 2356 87 0 19 chr13 23736336 23736648 -78136521 + AluSg SINE Alu 5 310 0 14347 134 75 113 chr13 23736648 23738826 -78134343 - L1P LINE L1 -4143 2003 1 486 277 77 23 chr13 23738917 23739105 -78134064 + MIR3 SINE MIR 2 208 0 2392 102 0 6 chr13 23739278 23739591 -78133578 - AluSx SINE Alu -1 311 1 1915 160 3 0 chr13 23740696 23740990 -78132179 - AluJo SINE Alu -17 295 1 2602 122 45 47 chr13 23740997 23741345 -78131824 - L1MB4 LINE L1 0 6180 5832 2157 131 3 3 chr13 23741345 23741651 -78131518 - AluSg SINE Alu -4 306 1 2602 122 45 47 chr13 23741651 23741770 -78131399 - L1MB4 LINE L1 -348 5832 5714 1855 107 0 93 chr13 23742164 23742503 -78130666 + AluSx SINE Alu 1 310 0 1979 121 3 3 chr13 23742575 23742904 -78130265 + AluSx SINE Alu 1 329 0 1166 164 50 142 chr13 23743115 23743517 -78129652 + MLT1A1 LTR MaLR 1 365 0 243 347 10 80 chr13 23743617 23743816 -78129353 - L2 LINE L2 -1 3271 3087 270 268 42 0 chr13 23743877 23743948 -78129221 + L2 LINE L2 3199 3272 0 222 243 264 43 chr13 23744523 23744663 -78128506 - MIR SINE MIR -61 201 31 216 0 0 0 chr13 23744722 23744746 -78128423 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1436 134 21 134 chr13 23744749 23745085 -78128084 - AluSc SINE Alu -1 298 1 844 225 70 65 chr13 23745216 23745450 -78127719 - L1MEc LINE L1 -864 5351 5113 2292 109 0 10 chr13 23745450 23745752 -78127417 - AluSx SINE Alu -13 299 1 844 225 70 65 chr13 23745752 23745931 -78127238 - L1MEc LINE L1 -1102 5113 4936 2224 136 107 3 chr13 23745931 23746313 -78126856 - MSTC LTR MaLR 0 428 7 2845 102 6 3 chr13 23746313 23746676 -78126493 + THE1B LTR MaLR 1 364 0 716 272 39 58 chr13 23746679 23746947 -78126222 - L1MEc LINE L1 -1270 4945 4684 2148 116 7 0 chr13 23746947 23747240 -78125929 + AluSq SINE Alu 2 296 -17 716 272 39 58 chr13 23747240 23747335 -78125834 - L1MEc LINE L1 -1531 4684 4589 1879 154 7 3 chr13 23747370 23747656 -78125513 - AluSx SINE Alu -25 287 1 323 190 0 25 chr13 23747732 23747811 -78125358 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 2226 91 3 3 chr13 23747811 23748098 -78125071 - AluSc SINE Alu -22 287 1 380 179 77 17 chr13 23748101 23748218 -78124951 - L1MEc LINE L1 -1701 4514 4391 1440 233 106 58 chr13 23748320 23748818 -78124351 - MLT1E LTR MaLR -2 591 70 740 289 260 17 chr13 23748869 23749526 -78123643 - L1MEc LINE L1 -1988 4227 3411 796 224 21 0 chr13 23749599 23749742 -78123427 - FRAM SINE Alu -30 146 1 1387 150 109 19 chr13 23750056 23750323 -78122846 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr13 23750347 23750368 -78122801 + AT_rich Low_complexity Low_complexity 1 21 0 2355 102 0 3 chr13 23750419 23750724 -78122445 - AluSx SINE Alu -8 304 1 620 271 201 24 chr13 23750731 23751233 -78121936 - L1MEc LINE L1 -3241 2974 2384 1962 125 11 0 chr13 23751311 23751628 -78121541 + AluSq SINE Alu 1 320 0 289 73 0 0 chr13 23751798 23751839 -78121330 - LTR60 LTR ERV1 0 586 546 240 250 161 27 chr13 23751898 23752010 -78121159 - L1MEc LINE L1 -4653 1743 1617 319 200 15 0 chr13 23752077 23752142 -78121027 - L1MEc LINE L1 -3435 2780 2715 1931 159 0 3 chr13 23752157 23752459 -78120710 - AluSx SINE Alu -11 301 1 365 263 5 54 chr13 23752585 23752771 -78120398 + C-rich Low_complexity Low_complexity 2 178 0 2318 41 44 7 chr13 23753568 23753862 -78119307 + AluY SINE Alu 1 305 -6 2163 93 0 23 chr13 23753869 23754179 -78118990 + AluSg SINE Alu 1 303 -7 386 238 87 0 chr13 23754479 23754605 -78118564 - L1MEc LINE L1 -5282 923 787 2104 132 3 7 chr13 23754734 23755038 -78118131 + AluSx SINE Alu 1 303 -9 1685 192 7 0 chr13 23755038 23755329 -78117840 - AluJo SINE Alu -19 293 1 201 268 0 0 chr13 23755515 23755571 -78117598 + (TA)n Simple_repeat Simple_repeat 2 57 0 471 290 50 73 chr13 23756213 23756265 -78116904 + MIR SINE MIR 3 55 -207 2319 97 0 3 chr13 23756265 23756564 -78116605 - AluSx SINE Alu -14 298 1 471 290 50 73 chr13 23756564 23756770 -78116399 + MIR SINE MIR 55 255 -7 1880 146 4 11 chr13 23756775 23757055 -78116114 + AluSx SINE Alu 1 278 -34 2298 95 3 0 chr13 23757100 23757394 -78115775 - AluSq SINE Alu -18 295 1 687 226 120 20 chr13 23757420 23757514 -78115655 + L1MDa LINE L1 2348 2431 -4253 2109 120 31 0 chr13 23757514 23757805 -78115364 + AluJb SINE Alu 1 300 -12 687 226 120 20 chr13 23757805 23757824 -78115345 + L1MDa LINE L1 2431 2447 -4237 2214 106 3 37 chr13 23757824 23758145 -78115024 + AluSg SINE Alu 1 310 0 687 226 120 20 chr13 23758145 23758399 -78114770 + L1MDa LINE L1 2447 2792 -3892 183 42 0 0 chr13 23758453 23758477 -78114692 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 528 346 49 11 chr13 23758646 23758912 -78114257 + HAL1 LINE L1 618 893 -1614 421 337 34 17 chr13 23758913 23758987 -78114182 + MLT1J LTR MaLR 3 74 -335 1782 154 10 29 chr13 23758987 23759293 -78113876 + AluJo SINE Alu 1 300 -12 421 337 34 17 chr13 23759293 23759427 -78113742 + MLT1J LTR MaLR 74 174 -235 326 116 0 0 chr13 23759437 23759480 -78113689 + Alu SINE Alu 1 43 -258 2522 81 3 0 chr13 23759530 23759839 -78113330 - AluSq SINE Alu -3 310 1 522 239 64 32 chr13 23759840 23760179 -78112990 + HAL1 LINE L1 1055 1496 -1011 1480 173 48 17 chr13 23760222 23760517 -78112652 + AluJb SINE Alu 1 304 -8 870 175 0 0 chr13 23760518 23760655 -78112514 + AluSg/x SINE Alu 137 273 -39 435 275 222 44 chr13 23760655 23761110 -78112059 + HAL1 LINE L1 1531 2066 -441 1788 145 25 7 chr13 23761154 23761437 -78111732 + AluJo SINE Alu 1 288 -24 43593 33 23 2 chr13 23761455 23767481 -78105688 + L1PA2 LINE L1 1 6151 -4 311 218 0 13 chr13 23767541 23767619 -78105550 + HAL1 LINE L1 2129 2205 -302 248 245 177 27 chr13 23767644 23767791 -78105378 + HAL1 LINE L1 2309 2477 -30 545 290 119 10 chr13 23767844 23768228 -78104941 + L1MC4a LINE L1 5188 5614 -628 439 245 54 44 chr13 23768289 23768424 -78104745 + L1MC4a LINE L1 5750 5882 -239 414 0 0 0 chr13 23768424 23768470 -78104699 + (CA)n Simple_repeat Simple_repeat 2 47 0 439 245 54 44 chr13 23768470 23768595 -78104574 + L1MC4a LINE L1 5882 6016 -105 29 28 0 0 chr13 23768669 23768705 -78104464 + AT_rich Low_complexity Low_complexity 1 36 0 6472 121 4 0 chr13 23769376 23769565 -78103604 + L1PA15 LINE L1 4928 5115 -1050 2123 117 0 13 chr13 23769565 23769865 -78103304 + AluSq SINE Alu 1 296 -17 6472 121 4 0 chr13 23769865 23770907 -78102262 + L1PA15 LINE L1 5115 6165 0 335 184 195 0 chr13 23771000 23771087 -78102082 - L1M LINE L1 -2614 5428 5325 1818 100 3 147 chr13 23771088 23771449 -78101720 - AluSx SINE Alu -3 309 1 2145 137 0 0 chr13 23771451 23771757 -78101412 - AluSx SINE Alu -6 306 1 2166 103 3 0 chr13 23771766 23772087 -78101082 - AluSq SINE Alu 0 322 1 595 246 15 20 chr13 23772087 23772282 -78100887 - L1M4 LINE L1 -864 5282 5089 482 225 8 62 chr13 23773402 23773531 -78099638 - MIR SINE MIR -54 208 87 1201 138 0 6 chr13 23773602 23773783 -78099386 - AluSg/x SINE Alu 0 310 131 285 242 110 11 chr13 23773899 23773990 -78099179 - MIR SINE MIR -64 144 45 1834 99 134 0 chr13 23774130 23774392 -78098777 + AluSx SINE Alu 1 297 -5 2256 108 13 0 chr13 23774683 23774988 -78098181 - AluSq SINE Alu -4 309 1 279 250 125 11 chr13 23776254 23776342 -78096827 - MIR SINE MIR -16 246 149 2400 232 26 42 chr13 23776440 23777081 -78096088 + L1ME1 LINE L1 5531 6161 -5 332 43 22 0 chr13 23777277 23777323 -78095846 + (TA)n Simple_repeat Simple_repeat 2 48 0 353 322 41 7 chr13 23777325 23777471 -78095698 - L1ME LINE L1 -356 5765 5615 321 266 159 18 chr13 23777859 23777972 -78095197 - MIR SINE MIR -10 252 124 188 293 67 40 chr13 23777972 23778047 -78095122 - MIR3 SINE MIR -129 79 3 294 298 0 12 chr13 23778151 23778235 -78094934 - L2 LINE L2 0 3313 3231 2290 106 13 0 chr13 23778556 23778858 -78094311 - AluSq SINE Alu -7 306 1 1180 239 19 0 chr13 23779271 23779531 -78093638 - AluJo SINE Alu -9 303 39 1974 158 87 14 chr13 23780049 23780417 -78092752 + LTR57 LTR ERVL 17 411 0 2195 119 0 16 chr13 23781281 23781592 -78091577 + AluSq SINE Alu 1 306 -7 217 243 0 0 chr13 23781925 23781962 -78091207 - L2 LINE L2 -12 3260 3224 * 424 289 98 5 chr13 23781930 23782124 -78091045 - MIR SINE MIR -11 251 40 34 55 0 0 chr13 23782306 23782361 -78090808 + AT_rich Low_complexity Low_complexity 1 55 0 1628 115 0 0 chr13 23783975 23784201 -78088968 - AluY SINE Alu -8 303 78 2083 44 4 4 chr13 23784301 23784549 -78088620 + AluY SINE Alu 52 299 -12 1132 192 5 0 chr13 23784549 23784747 -78088422 - AluJo SINE Alu -113 199 1 2286 100 3 25 chr13 23785544 23785863 -78087306 + AluSx SINE Alu 1 312 0 560 173 209 0 chr13 23786217 23786356 -78086813 + L1ME2 LINE L1 5726 5893 -273 1227 131 11 11 chr13 23786362 23786545 -78086624 + AluSg/x SINE Alu 120 302 -8 592 260 130 18 chr13 23786545 23786768 -78086401 + L1ME2 LINE L1 5907 6154 -10 310 305 39 8 chr13 23786795 23786923 -78086246 + L1MC5 LINE L1 7782 7913 -48 672 216 0 8 chr13 23787021 23787155 -78086014 - FLAM_A SINE Alu 0 133 1 1663 155 34 7 chr13 23787381 23787678 -78085491 + AluJo SINE Alu 1 305 -7 446 205 39 71 chr13 23788186 23788313 -78084856 + L1ME LINE L1 5547 5669 -452 207 100 0 0 chr13 23788313 23788343 -78084826 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1708 162 47 14 chr13 23788348 23788644 -78084525 + AluJb SINE Alu 1 306 -6 587 275 74 89 chr13 23788666 23788860 -78084309 + L2 LINE L2 2915 3110 -203 1674 143 0 8 chr13 23788860 23789104 -78084065 - AluJo SINE Alu -50 262 21 587 275 74 89 chr13 23789104 23789171 -78083998 + L2 LINE L2 3110 3176 -137 531 0 0 0 chr13 23789171 23789230 -78083939 + (TG)n Simple_repeat Simple_repeat 2 60 0 587 275 74 89 chr13 23789230 23789371 -78083798 + L2 LINE L2 3176 3312 -1 1078 288 76 3 chr13 23789997 23790341 -78082828 + MLT1G1 LTR MaLR 5 373 -222 367 237 40 0 chr13 23790469 23790545 -78082624 + MER2 DNA MER2_type 267 345 0 573 252 15 0 chr13 23790551 23790686 -78082483 + MER119 DNA MER1_type 170 306 -277 * 1168 202 185 34 chr13 23790676 23791033 -78082136 + MLT1G3 LTR MaLR 110 520 -10 2159 118 0 7 chr13 23792400 23792704 -78080465 - AluSx SINE Alu -10 302 1 1680 93 5 0 chr13 23793272 23793486 -78079683 - AluSp SINE Alu -18 295 81 229 228 193 0 chr13 23793610 23793667 -78079502 - MIR SINE MIR -116 146 79 294 322 0 0 chr13 23794446 23794536 -78078633 - L2 LINE L2 -32 3281 3192 1436 114 199 4 chr13 23794650 23794896 -78078273 - AluJb SINE Alu -8 294 1 510 206 56 32 chr13 23794916 23795042 -78078127 - MER5A DNA MER1_type -44 145 17 2079 116 4 0 chr13 23795306 23795583 -78077586 + AluSg SINE Alu 1 278 -32 432 0 0 0 chr13 23795584 23795632 -78077537 + (TA)n Simple_repeat Simple_repeat 2 49 0 183 286 43 0 chr13 23797007 23797077 -78076092 + MIR SINE MIR 46 118 -90 2212 82 0 58 chr13 23797707 23797852 -78075317 + AluSx SINE Alu 1 153 -159 237 33 0 0 chr13 23797852 23797882 -78075287 + (CA)n Simple_repeat Simple_repeat 2 31 0 2212 82 0 58 chr13 23797882 23798064 -78075105 + AluSx SINE Alu 153 309 -3 2135 114 3 0 chr13 23798076 23798365 -78074804 + AluSx SINE Alu 5 294 -18 1351 145 200 14 chr13 23798762 23799154 -78074015 - LTR54B LTR ERV1 0 510 8 2025 143 3 0 chr13 23799209 23799502 -78073667 - AluSx SINE Alu -18 294 1 275 268 37 12 chr13 23799504 23799586 -78073583 - L1ME3A LINE L1 -53 6117 6034 1085 157 24 43 chr13 23800100 23800310 -78072859 + AluJb SINE Alu 107 312 0 605 231 164 29 chr13 23800699 23800937 -78072232 - MLT1H1 LTR MaLR 0 555 286 1578 178 4 15 chr13 23802294 23802563 -78070606 + AluJb SINE Alu 32 297 -15 275 289 70 18 chr13 23803995 23804109 -78069060 - L2 LINE L2 -1 3271 3152 567 225 0 26 chr13 23804123 23804274 -78068895 + L2 LINE L2 3166 3312 -1 453 158 0 12 chr13 23804301 23804383 -78068786 + FLAM_A SINE Alu 44 124 -18 510 249 97 55 chr13 23804530 23804641 -78068528 - MIR SINE MIR 0 262 157 2252 104 0 16 chr13 23804641 23804948 -78068221 - AluSx SINE Alu -10 302 1 510 249 97 55 chr13 23804948 23805073 -78068096 - MIR SINE MIR -105 157 16 1773 146 0 76 chr13 23805612 23805928 -78067241 + AluJo SINE Alu 1 292 -20 21 0 0 0 chr13 23805928 23805949 -78067220 + AT_rich Low_complexity Low_complexity 1 21 0 236 30 30 0 chr13 23806412 23806445 -78066724 + (GA)n Simple_repeat Simple_repeat 1 34 0 1785 155 26 4 chr13 23806617 23806888 -78066281 + AluJo SINE Alu 3 279 -33 265 222 120 26 chr13 23806994 23807111 -78066058 + L2 LINE L2 2841 2968 -304 625 295 83 58 chr13 23807123 23807662 -78065507 + LTR67 LTR ERVL 2 554 -3 785 232 97 56 chr13 23808240 23808341 -78064828 + MLT1L LTR MaLR 41 136 -479 1296 228 66 9 chr13 23808341 23808661 -78064508 + MER58B DNA MER1_type 1 338 -3 785 232 97 56 chr13 23808661 23808899 -78064270 + MLT1L LTR MaLR 136 394 -221 297 207 17 17 chr13 23808930 23808988 -78064181 + MLT1L LTR MaLR 467 524 -91 1853 149 14 3 chr13 23809012 23809307 -78063862 + AluJo SINE Alu 1 298 -14 21 36 0 0 chr13 23809514 23809542 -78063627 + AT_rich Low_complexity Low_complexity 1 28 0 232 258 32 0 chr13 23809571 23809633 -78063536 + CT-rich Low_complexity Low_complexity 6 69 0 23 0 0 0 chr13 23809767 23809790 -78063379 + AT_rich Low_complexity Low_complexity 1 23 0 1876 142 38 0 chr13 23809796 23810112 -78063057 + L1MA5 LINE L1 5973 6300 0 2050 94 0 18 chr13 23810242 23810518 -78062651 - AluSx SINE Alu -2 310 40 2325 102 0 0 chr13 23810987 23811282 -78061887 - AluSx SINE Alu -17 295 1 1177 105 6 6 chr13 23811557 23811719 -78061450 - AluSg/x SINE Alu -22 287 126 1408 77 0 11 chr13 23811820 23812002 -78061167 + AluSg/x SINE Alu 120 299 -11 1403 134 103 65 chr13 23812630 23812815 -78060354 - AluJo SINE Alu -10 302 101 3977 128 14 76 chr13 23812815 23813552 -78059617 + LTR8 LTR ERV1 1 691 0 1403 134 103 65 chr13 23813552 23813657 -78059512 - AluJo SINE Alu -211 101 1 2350 104 3 3 chr13 23814031 23814340 -78058829 + AluSx SINE Alu 3 311 -1 282 29 0 0 chr13 23814405 23814440 -78058729 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr13 23814439 23814461 -78058708 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 775 196 28 0 chr13 23814467 23814595 -78058574 - AluJo SINE Alu -44 268 134 2198 112 6 13 chr13 23814595 23814908 -78058261 - AluSx SINE Alu -1 311 1 775 196 28 0 chr13 23814908 23814922 -78058247 - AluJo SINE Alu -178 134 122 2422 62 7 3 chr13 23816432 23816737 -78056432 - AluSp SINE Alu -7 306 1 213 234 65 39 chr13 23817056 23817133 -78056036 + MIR SINE MIR 66 144 -64 334 0 21 21 chr13 23817152 23817199 -78055970 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2141 116 0 3 chr13 23817215 23817507 -78055662 - AluSg SINE Alu -19 291 1 258 323 0 21 chr13 23818020 23818113 -78055056 + MER5A DNA MER1_type 68 158 -31 398 271 129 13 chr13 23818148 23818303 -78054866 + MER5A DNA MER1_type 8 180 -9 21 0 0 0 chr13 23818441 23818462 -78054707 + AT_rich Low_complexity Low_complexity 1 21 0 1873 197 21 0 chr13 23819135 23819475 -78053694 + MER7A DNA MER2_type 1 345 -1 2440 81 3 0 chr13 23819909 23820207 -78052962 + AluSp SINE Alu 1 299 -14 339 314 39 39 chr13 23821626 23821830 -78051339 - MIR3 SINE MIR 0 208 5 2065 133 17 0 chr13 23823853 23824146 -78049023 + AluSx SINE Alu 1 298 -14 270 280 197 0 chr13 23824467 23824599 -78048570 - MIR SINE MIR -25 237 80 808 169 7 7 chr13 23825219 23825355 -78047814 + AluJo SINE Alu 1 136 -176 2041 139 16 7 chr13 23826801 23827110 -78046059 + AluJb SINE Alu 1 312 0 195 154 39 58 chr13 23827601 23827653 -78045516 + L2 LINE L2 3220 3270 -2 2389 68 7 3 chr13 23828429 23828722 -78044447 - AluSc SINE Alu -15 294 1 305 233 226 15 chr13 23828810 23828943 -78044226 + MER20B DNA MER1_type 29 189 -594 1779 116 105 0 chr13 23829072 23829339 -78043830 - AluSx SINE Alu -17 295 1 1441 200 75 8 chr13 23829859 23830165 -78043004 - MLT1A2 LTR MaLR 0 593 55 381 303 69 6 chr13 23830201 23830376 -78042793 + MIR SINE MIR 20 205 -57 2433 69 0 29 chr13 23830394 23830700 -78042469 - AluY SINE Alu -14 297 1 834 207 12 6 chr13 23830709 23830873 -78042296 - FAM SINE Alu -10 165 1 438 217 40 63 chr13 23832016 23832188 -78040981 - L1ME3A LINE L1 -1 6163 5996 2480 63 7 7 chr13 23834502 23834805 -78038364 + AluY SINE Alu 1 303 -8 2305 93 0 13 chr13 23836013 23836313 -78036856 - AluSx SINE Alu -16 296 1 2452 83 0 0 chr13 23837059 23837360 -78035809 + AluSg SINE Alu 1 301 -9 779 294 16 13 chr13 23838649 23838962 -78034207 + L1PA16 LINE L1 2 315 -7266 240 682 0 0 chr13 23838965 23839122 -78034047 + C-rich Low_complexity Low_complexity 1 157 0 13218 225 38 25 chr13 23839136 23842842 -78030327 + L1PA16 LINE L1 320 4930 -2674 2157 108 10 3 chr13 23842842 23843138 -78030031 + AluSg SINE Alu 1 298 -12 13218 225 38 25 chr13 23843138 23845837 -78027332 + L1PA16 LINE L1 4930 7591 -13 1933 155 10 13 chr13 23846998 23847307 -78025862 + AluJb SINE Alu 1 308 -4 254 222 16 0 chr13 23848071 23848134 -78025035 + (TA)n Simple_repeat Simple_repeat 2 65 0 2242 96 17 0 chr13 23848536 23848829 -78024340 - AluSc SINE Alu -11 298 1 2575 48 0 16 chr13 23848834 23849143 -78024026 - AluY SINE Alu -7 304 1 846 50 117 0 chr13 23849279 23849399 -78023770 + MER85 DNA T2_type 4 137 -2 2767 196 44 7 chr13 23851107 23851703 -78021466 - MER54A LTR ERVL 0 901 284 895 132 0 0 chr13 23851703 23851824 -78021345 + FRAM SINE Alu 28 148 -28 2036 101 11 0 chr13 23851824 23852102 -78021067 - AluSp SINE Alu -16 297 17 23 0 0 0 chr13 23852102 23852125 -78021044 + AT_rich Low_complexity Low_complexity 1 23 0 21 119 0 0 chr13 23852206 23852332 -78020837 + AT_rich Low_complexity Low_complexity 1 126 0 225 94 0 0 chr13 23852745 23852777 -78020392 + (TG)n Simple_repeat Simple_repeat 1 32 0 2279 114 0 0 chr13 23852927 23853235 -78019934 - AluSc SINE Alu -1 308 1 23 78 0 0 chr13 23853262 23853313 -78019856 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr13 23853421 23853449 -78019720 + AT_rich Low_complexity Low_complexity 1 28 0 2399 103 3 0 chr13 23854007 23854319 -78018850 + AluSp SINE Alu 1 313 0 628 193 0 6 chr13 23854341 23854583 -78018586 + AluJ SINE Alu 1 295 -17 40951 32 23 1 chr13 23854590 23860638 -78012531 + L1PA2 LINE L1 3 6155 0 296 241 143 9 chr13 23860929 23861041 -78012128 - MIR SINE MIR -55 207 81 227 362 103 9 chr13 23861130 23861362 -78011807 - L2 LINE L2 -668 2646 2393 495 348 17 6 chr13 23861827 23862005 -78011164 + MER5A DNA MER1_type 7 186 -3 2260 132 0 7 chr13 23862749 23863059 -78010110 + AluSx SINE Alu 1 308 -4 282 357 94 22 chr13 23863150 23863374 -78009795 - L3b LINE CR1 -219 1364 1125 24913 57 5 0 chr13 23863502 23867638 -78005531 + L1PA6 LINE L1 1997 6149 -5 8636 203 21 43 chr13 23867632 23868212 -78004957 + L1 LINE L1 2920 3512 -2634 * 2251 106 3 3 chr13 23868212 23868514 -78004655 + AluSg SINE Alu 1 302 -8 8636 203 21 43 chr13 23868514 23869030 -78004139 + L1 LINE L1 3512 4038 -2108 2170 120 7 0 chr13 23869030 23869329 -78003840 + AluSx SINE Alu 1 301 -11 8636 203 21 43 chr13 23869329 23870761 -78002408 + L1 LINE L1 4038 5392 -754 1264 124 27 0 chr13 23870756 23870981 -78002188 + L1PA16 LINE L1 5602 5832 -334 * 301 136 0 34 chr13 23870991 23871050 -78002119 + L1P4 LINE L1 5778 5834 -332 2096 158 5 23 chr13 23871058 23871116 -78002053 + L1PA16 LINE L1 5778 5836 -330 2430 89 0 0 chr13 23871116 23871418 -78001751 + AluSq SINE Alu 3 304 -9 2096 158 5 23 chr13 23871418 23871745 -78001424 + L1PA16 LINE L1 5836 6156 -10 656 278 36 26 chr13 23871835 23872144 -78001025 + L1ME LINE L1 3837 4148 -1998 2105 257 89 107 chr13 23872371 23873717 -77999452 + L1ME LINE L1 2586 3955 -2207 2037 138 16 0 chr13 23873717 23874022 -77999147 - AluSx SINE Alu -2 310 1 2105 257 89 107 chr13 23874022 23874054 -77999115 + L1ME LINE L1 3955 3986 -2176 324 0 0 0 chr13 23874054 23874090 -77999079 + (CA)n Simple_repeat Simple_repeat 2 37 0 2105 257 89 107 chr13 23874090 23874433 -77998736 + L1ME LINE L1 3986 4334 -1828 909 137 0 0 chr13 23874433 23874557 -77998612 + AluJb SINE Alu 168 291 -21 2105 257 89 107 chr13 23874557 23875886 -77997283 + L1ME LINE L1 4334 5705 -457 2275 121 0 0 chr13 23875886 23876184 -77996985 + AluSx SINE Alu 1 298 -14 2105 257 89 107 chr13 23876184 23876228 -77996941 + L1ME LINE L1 5705 5748 -414 400 252 19 7 chr13 23876359 23876514 -77996655 + L1ME LINE L1 4536 4692 -1454 553 292 113 52 chr13 23876560 23876886 -77996283 + L1ME LINE L1 4813 5176 -970 1894 165 0 7 chr13 23876886 23877183 -77995986 + AluJo SINE Alu 3 297 -15 553 292 113 52 chr13 23877183 23877315 -77995854 + L1ME LINE L1 5176 5299 -847 343 169 26 13 chr13 23877632 23877709 -77995460 - MER116 DNA Mariner 0 80 3 5440 134 55 15 chr13 23878233 23879423 -77993746 + L1MA8 LINE L1 4770 6029 -262 2280 108 10 3 chr13 23879423 23879728 -77993441 - AluSq SINE Alu -6 307 1 5440 134 55 15 chr13 23879728 23880002 -77993167 + L1MA8 LINE L1 6029 6291 0 315 276 31 0 chr13 23880132 23880230 -77992939 + CT-rich Low_complexity Low_complexity 2 102 0 24 32 0 0 chr13 23880464 23880495 -77992674 + AT_rich Low_complexity Low_complexity 1 31 0 216 228 0 0 chr13 23882133 23882190 -77990979 + (TA)n Simple_repeat Simple_repeat 1 57 0 389 221 255 0 chr13 23883084 23883233 -77989936 + L1ME LINE L1 5575 5761 -360 480 176 0 0 chr13 23883288 23883390 -77989779 + (TA)n Simple_repeat Simple_repeat 1 102 0 2544 59 0 3 chr13 23883390 23883696 -77989473 - AluY SINE Alu -6 305 1 2375 104 0 3 chr13 23883707 23884015 -77989154 - AluSq SINE Alu -6 307 1 188 149 21 0 chr13 23884199 23884246 -77988923 + (TA)n Simple_repeat Simple_repeat 1 48 0 903 186 127 51 chr13 23885526 23885763 -77987406 + AluJo SINE Alu 49 303 -9 254 231 39 13 chr13 23886248 23886326 -77986843 + MLT1H LTR MaLR 4 83 -466 2597 249 108 21 chr13 23886547 23887125 -77986044 + L1M4 LINE L1 3670 4196 -1950 1429 160 103 39 chr13 23887125 23887406 -77985763 + AluJo SINE Alu 1 299 -13 2597 249 108 21 chr13 23887406 23887686 -77985483 + L1M4 LINE L1 4196 4450 -1696 324 94 0 0 chr13 23887686 23887739 -77985430 + (TG)n Simple_repeat Simple_repeat 2 54 0 2597 249 108 21 chr13 23887739 23888118 -77985051 + L1M4 LINE L1 4450 5016 -1130 299 198 44 11 chr13 23888125 23888216 -77984953 + L1ME3 LINE L1 6067 6160 -2 234 255 0 0 chr13 23888223 23888274 -77984895 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2824 83 20 0 chr13 23888290 23888685 -77984484 - L1PA11 LINE L1 -3 6171 5769 495 89 258 0 chr13 23889677 23889786 -77983383 - L1M2 LINE L1 -387 5787 5661 328 132 0 0 chr13 23889798 23889851 -77983318 - AluSg SINE Alu -215 85 33 204 40 0 0 chr13 23890070 23890095 -77983074 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 40731 36 22 1 chr13 23890283 23896310 -77976859 - L1PA3 LINE L1 0 6155 1 21 57 0 0 chr13 23897664 23897699 -77975470 + AT_rich Low_complexity Low_complexity 1 35 0 1269 195 10 70 chr13 23897810 23898112 -77975057 + AluJo SINE Alu 13 296 -16 1046 164 50 50 chr13 23948188 23948408 -77924761 + ERVL-B3 LTR ERVL 5536 5755 -9 1376 127 73 70 chr13 23948410 23948526 -77924643 + MLT2B3 LTR ERVL 1 115 -439 1815 146 42 0 chr13 23948526 23948813 -77924356 - AluJb SINE Alu -11 301 3 1376 127 73 70 chr13 23948813 23948955 -77924214 + MLT2B3 LTR ERVL 115 260 -294 1468 275 79 55 chr13 23948955 23949594 -77923575 - L2 LINE L2 -879 2435 1778 1743 184 7 26 chr13 23949594 23949899 -77923270 + AluJb SINE Alu 1 299 -13 1468 275 79 55 chr13 23949899 23949929 -77923240 - L2 LINE L2 -1536 1778 1750 1603 197 16 7 chr13 23950012 23950321 -77922848 + AluJb SINE Alu 1 312 0 396 224 103 67 chr13 23950423 23950588 -77922581 + MIR3 SINE MIR 33 203 -5 2300 96 0 7 chr13 23950671 23950974 -77922195 + AluSg1 SINE Alu 1 301 -8 2434 91 0 0 chr13 23951341 23951650 -77921519 - AluSq SINE Alu -3 310 2 1720 175 36 7 chr13 23951840 23952143 -77921026 + AluJo SINE Alu 1 312 0 518 299 147 5 chr13 23952446 23952657 -77920512 + MIR SINE MIR 4 244 -18 612 205 117 2 chr13 23952660 23952814 -77920355 + L1MD2 LINE L1 5750 5918 -263 1656 149 20 0 chr13 23952824 23953073 -77920096 + MER1B DNA MER1_type 86 339 0 919 212 69 27 chr13 23953074 23953347 -77919822 + L1ME1 LINE L1 5901 6135 -31 1739 206 97 10 chr13 23953347 23953749 -77919420 + L1MD3 LINE L1 7559 7995 0 23 0 0 0 chr13 23954049 23954072 -77919097 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chr13 23954585 23954629 -77918540 + L2 LINE L2 3265 3308 -5 198 143 0 0 chr13 23954976 23955011 -77918158 + (A)n Simple_repeat Simple_repeat 1 35 0 234 0 0 0 chr13 23955107 23955133 -77918036 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2306 84 0 53 chr13 23955155 23955478 -77917691 - AluY SINE Alu -5 306 1 5817 33 0 0 chr13 23955734 23956370 -77916799 + L1PA5 LINE L1 5510 6145 -9 22 0 0 0 chr13 23956370 23956392 -77916777 + AT_rich Low_complexity Low_complexity 1 22 0 225 320 64 13 chr13 23956640 23956718 -77916451 - MIR SINE MIR -161 101 20 2465 87 0 3 chr13 23956777 23957088 -77916081 + AluSg SINE Alu 1 310 0 2174 113 3 0 chr13 23957672 23957963 -77915206 + AluSq SINE Alu 1 292 -21 879 138 0 23 chr13 23958032 23958162 -77915007 - FLAM_C SINE Alu -6 127 1 21 0 0 0 chr13 23958168 23958189 -77914980 + AT_rich Low_complexity Low_complexity 1 21 0 190 156 62 109 chr13 23958799 23958814 -77914355 + MIR SINE MIR 201 215 -47 2342 96 0 3 chr13 23958814 23959116 -77914053 + AluSx SINE Alu 1 301 -11 190 156 62 109 chr13 23959116 23959164 -77914005 + MIR SINE MIR 215 261 -1 697 288 175 31 chr13 23959845 23960171 -77912998 - L2 LINE L2 -502 2812 2440 207 220 0 60 chr13 23960172 23960222 -77912947 + MIR SINE MIR 210 256 -6 2199 115 3 6 chr13 23960423 23960737 -77912432 + AluSq SINE Alu 1 313 0 271 333 140 71 chr13 23960755 23961497 -77911672 + L2 LINE L2 2128 2920 -394 * 708 285 54 16 chr13 23961487 23961729 -77911440 - MIR SINE MIR -10 252 2 469 197 31 79 chr13 23962282 23962343 -77910826 - MER5A DNA MER1_type -68 121 68 2167 123 0 0 chr13 23962343 23962636 -77910533 + AluSx SINE Alu 1 293 -19 469 197 31 79 chr13 23962636 23962701 -77910468 - MER5A DNA MER1_type -121 68 1 2100 122 0 16 chr13 23962942 23963245 -77909924 - AluSx SINE Alu -14 298 1 558 318 76 14 chr13 23963474 23963697 -77909472 + L2 LINE L2 2805 3041 -272 2458 71 7 0 chr13 23965180 23965488 -77907681 + AluSg SINE Alu 1 310 0 279 0 0 0 chr13 23965490 23965521 -77907648 + (TA)n Simple_repeat Simple_repeat 1 31 0 1387 238 110 66 chr13 23966016 23966772 -77906397 - L1M4 LINE L1 -1353 4793 3883 35 41 0 0 chr13 23966772 23966821 -77906348 + AT_rich Low_complexity Low_complexity 1 49 0 1884 178 152 8 chr13 23966884 23967278 -77905891 - LTR32 LTR ERVL -7 464 14 374 227 76 74 chr13 23967373 23967406 -77905763 + L1ME3 LINE L1 5381 5412 -758 1902 141 14 0 chr13 23967406 23967697 -77905472 + AluSx SINE Alu 1 295 -17 374 227 76 74 chr13 23967697 23967860 -77905309 + L1ME3 LINE L1 5412 5578 -592 2368 155 29 3 chr13 23968009 23968390 -77904779 - MSTA LTR MaLR -37 391 1 1206 224 171 21 chr13 23968390 23968860 -77904309 + L1ME3 LINE L1 5582 6127 -35 1523 154 61 39 chr13 23968862 23969168 -77904001 + AluJo SINE Alu 3 314 0 653 164 52 177 chr13 23969829 23969979 -77903190 + L1M4 LINE L1 4339 4506 -1640 1986 107 4 0 chr13 23969979 23970251 -77902918 + AluSp SINE Alu 41 313 0 653 164 52 177 chr13 23970251 23970293 -77902876 + L1M4 LINE L1 4506 4552 -1594 2402 43 3 10 chr13 23970293 23970594 -77902575 + AluY SINE Alu 1 299 -12 653 164 52 177 chr13 23970594 23970710 -77902459 + L1M4 LINE L1 4552 4609 -1537 625 149 16 58 chr13 23970716 23970837 -77902332 + FLAM_A SINE Alu 22 137 -5 236 160 0 40 chr13 23970837 23970887 -77902282 + L1M4 LINE L1 4604 4651 -1495 2346 96 0 0 chr13 23970893 23971195 -77901974 + AluSx SINE Alu 1 302 -10 273 330 9 19 chr13 23971212 23971278 -77901891 - MER5A DNA MER1_type -75 114 48 1444 169 37 30 chr13 23971278 23971574 -77901595 + AluJb SINE Alu 1 298 -14 273 330 9 19 chr13 23971574 23971613 -77901556 - MER5A DNA MER1_type -141 48 10 1229 174 9 0 chr13 23971715 23971928 -77901241 - AluJb SINE Alu -12 300 86 234 278 41 52 chr13 23971973 23972070 -77901099 + MER21B LTR ERV1 1 96 -767 2624 226 59 35 chr13 23972109 23972800 -77900369 + MER21B LTR ERV1 98 805 -58 332 263 32 11 chr13 23972856 23972951 -77900218 + L2 LINE L2 3216 3312 -1 1927 155 0 3 chr13 23973139 23973435 -77899734 - AluJb SINE Alu -15 297 3 1163 179 134 70 chr13 23973673 23973823 -77899346 + MSTC LTR MaLR 1 140 -288 2204 103 3 0 chr13 23973823 23974132 -77899037 + AluSp SINE Alu 1 310 0 1163 179 134 70 chr13 23974132 23974382 -77898787 + MSTC LTR MaLR 140 428 0 262 259 71 0 chr13 23974448 23974533 -77898636 + L1ME LINE L1 5767 5857 -264 2174 113 0 7 chr13 23974680 23974980 -77898189 + AluSx SINE Alu 5 302 -10 22 35 0 0 chr13 23975220 23975249 -77897920 + AT_rich Low_complexity Low_complexity 1 29 0 385 208 131 69 chr13 23975885 23976015 -77897154 - MIR3 SINE MIR -6 202 65 2233 106 10 0 chr13 23977603 23977906 -77895263 - AluSp SINE Alu -7 306 1 1795 90 4 8 chr13 23978862 23979096 -77894073 - AluSg/x SINE Alu -14 298 66 344 261 127 28 chr13 23979277 23979419 -77893750 - MIR SINE MIR -105 157 2 557 283 66 6 chr13 23979735 23979901 -77893268 + MIR SINE MIR 25 200 -62 3613 198 59 24 chr13 23979901 23980779 -77892390 + L1ME1 LINE L1 5254 6162 -4 2030 121 7 0 chr13 23980803 23981084 -77892085 + AluSx SINE Alu 1 283 -29 253 160 7 0 chr13 23981097 23981153 -77892016 + L1PA7 LINE L1 6091 6166 -6 218 330 85 28 chr13 23981957 23982063 -77891106 + L2 LINE L2 3159 3270 -2 27 29 0 0 chr13 23982330 23982364 -77890805 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr13 23982494 23982517 -77890652 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1341 143 6 163 chr13 23982532 23982881 -77890288 - AluJo SINE Alu -18 294 1 208 125 0 100 chr13 23983597 23983637 -77889532 - MIR3 SINE MIR -22 186 151 230 223 152 45 chr13 23983721 23983833 -77889336 - MIR3 SINE MIR -27 181 58 458 163 35 0 chr13 23983838 23983924 -77889245 - L2 LINE L2 -2 3311 3223 17740 147 58 14 chr13 23983942 23986938 -77886231 + ERVL LTR ERVL 2409 5538 -226 2207 100 0 36 chr13 23986938 23987247 -77885922 - AluSg SINE Alu -12 298 1 2112 135 0 7 chr13 23987292 23987595 -77885574 - AluSx SINE Alu -11 301 1 467 291 106 5 chr13 23987956 23988145 -77885024 + MIR SINE MIR 2 209 -53 27 29 0 0 chr13 23988183 23988217 -77884952 + AT_rich Low_complexity Low_complexity 1 34 0 353 298 78 0 chr13 23988308 23988449 -77884720 + L1MC4 LINE L1 7890 8041 -1 1328 197 80 24 chr13 23988529 23988818 -77884351 + AluJo SINE Alu 1 305 -7 1183 148 51 5 chr13 23989120 23989337 -77883832 + MER46A DNA MER2_type 6 232 -4 279 0 0 0 chr13 23989865 23989896 -77883273 + (A)n Simple_repeat Simple_repeat 1 31 0 1801 179 0 3 chr13 23991146 23991437 -77881732 - AluJo SINE Alu -22 290 1 1968 140 3 7 chr13 23992008 23992300 -77880869 - AluJb SINE Alu -21 291 1 205 297 0 31 chr13 23993657 23993721 -77879448 - L3 LINE CR1 -1199 378 317 301 284 49 39 chr13 23994805 23994907 -77878262 - L1MEd LINE L1 -4741 1390 1288 464 201 169 44 chr13 23995096 23995327 -77877842 - L1MEd LINE L1 -4917 1202 931 1905 134 31 14 chr13 23995327 23995617 -77877552 - AluSx SINE Alu -17 295 1 464 201 169 44 chr13 23995617 23995658 -77877511 - L1MEd LINE L1 -5188 931 896 652 192 53 0 chr13 23995704 23995855 -77877314 - L1MA10 LINE L1 -1 6333 6175 285 171 27 95 chr13 23995855 23995968 -77877201 - L1ME2 LINE L1 -151 6015 5917 339 147 0 44 chr13 23995976 23996044 -77877125 + Tigger2 DNA MER2_type 5 69 -2649 * 925 130 0 12 chr13 23996034 23996196 -77876973 + Tigger2 DNA MER2_type 2273 2432 -286 911 180 12 30 chr13 23996196 23996363 -77876806 + AluJo SINE Alu 1 164 -148 284 238 48 0 chr13 23996365 23996428 -77876741 + Tigger2 DNA MER2_type 2653 2718 0 315 202 18 37 chr13 23996446 23996555 -77876614 - L1ME2 LINE L1 -279 5887 5781 443 83 0 0 chr13 23996558 23996618 -77876551 + Alu SINE Alu 235 294 -15 385 184 11 0 chr13 23996620 23996707 -77876462 + L1M4 LINE L1 5688 5775 -409 1613 141 12 0 chr13 23996740 23996982 -77876187 + AluSx SINE Alu 1 245 -67 708 319 59 12 chr13 23997010 23997418 -77875751 + L1MEd LINE L1 474 900 -5219 798 239 0 10 chr13 23997430 23997627 -77875542 + L1MEc LINE L1 37 231 -6165 492 187 16 32 chr13 23997635 23997758 -77875411 + L1ME LINE L1 5564 5684 -482 * 524 277 86 26 chr13 23997739 23998006 -77875163 - L1MEd LINE L1 -5669 450 168 25 31 0 0 chr13 23998437 23998469 -77874700 + AT_rich Low_complexity Low_complexity 1 32 0 2130 131 0 0 chr13 23998474 23998764 -77874405 - AluSq SINE Alu -23 290 1 1808 170 13 3 chr13 23998827 23999133 -77874036 - AluJo SINE Alu -3 309 1 337 333 80 84 chr13 23999869 24000320 -77872849 + L2 LINE L2 2809 3257 -15 25 31 0 0 chr13 24001007 24001039 -77872130 + AT_rich Low_complexity Low_complexity 1 32 0 1931 148 21 3 chr13 24001072 24001362 -77871807 + AluSx SINE Alu 6 300 -12 778 236 48 75 chr13 24001363 24001761 -77871408 - L1MC5 LINE L1 -287 7674 7288 1645 154 0 101 chr13 24001833 24002170 -77870999 - AluJo SINE Alu -6 306 4 587 181 56 95 chr13 24002176 24002456 -77870713 - L1MC5 LINE L1 -34 7927 7658 2373 91 3 0 chr13 24002456 24002753 -77870416 - AluSp SINE Alu -15 298 1 587 181 56 95 chr13 24002753 24002776 -77870393 - L1MC5 LINE L1 -303 7658 7636 1854 167 86 3 chr13 24002776 24003136 -77870033 + MLT1B LTR MaLR 1 390 0 897 123 152 6 chr13 24003727 24003898 -77869271 + MSTA LTR MaLR 1 196 -232 6580 66 21 35 chr13 24003898 24005889 -77867280 + SVA Other Other 7 1386 0 4616 26 0 0 chr13 24005936 24006473 -77866696 - L1PA2 LINE L1 -5 6150 5614 4144 20 0 0 chr13 24006473 24006974 -77866195 + L1P LINE L1 4507 5007 -1139 6409 59 35 38 chr13 24007173 24008218 -77864951 + SVA Other Other 433 1386 0 458 143 92 59 chr13 24008250 24008303 -77864866 + LTR49-int LTR ERV1 3141 3191 -3140 2158 138 3 6 chr13 24008303 24008615 -77864554 - AluSq SINE Alu -2 311 1 458 143 92 59 chr13 24008615 24008680 -77864489 + LTR49-int LTR ERV1 3191 3263 -3068 319 200 0 0 chr13 24008734 24008794 -77864375 + LTR49-int LTR ERV1 3275 3334 -2997 457 194 20 0 chr13 24008857 24008955 -77864214 + LTR49-int LTR ERV1 3348 3447 -2884 186 43 0 0 chr13 24009132 24009155 -77864014 + (A)n Simple_repeat Simple_repeat 1 23 0 1320 96 87 30 chr13 24009156 24009386 -77863783 + MSTA LTR MaLR 186 428 0 245 343 14 0 chr13 24009554 24009627 -77863542 - L2 LINE L2 -44 3228 3155 788 191 0 0 chr13 24010036 24010167 -77863002 + FLAM_A SINE Alu 1 131 -2 2270 97 0 7 chr13 24010838 24011138 -77862031 + AluSc SINE Alu 1 298 -11 423 273 42 35 chr13 24011400 24011543 -77861626 - MIR3 SINE MIR -1 207 64 2348 185 79 84 chr13 24011567 24012245 -77860924 - L1MC4 LINE L1 -5 8037 7362 734 167 0 0 chr13 24012245 24012359 -77860810 - FLAM_A SINE Alu -18 115 2 2348 185 79 84 chr13 24012359 24012473 -77860696 - L1MC4 LINE L1 -680 7362 7249 673 159 0 0 chr13 24012498 24012605 -77860564 - AluSg/x SINE Alu -16 293 187 994 206 0 0 chr13 24013029 24013204 -77859965 + FAM SINE Alu 1 175 0 21 0 0 0 chr13 24013771 24013792 -77859377 + AT_rich Low_complexity Low_complexity 1 21 0 1940 136 19 10 chr13 24013915 24014223 -77858946 + AluSx SINE Alu 1 311 -1 430 261 187 25 chr13 24014535 24014738 -77858431 - MIR SINE MIR -21 241 6 2315 90 3 3 chr13 24015142 24015441 -77857728 + AluSc SINE Alu 2 300 -9 1600 154 60 101 chr13 24015792 24016076 -77857093 - MLT1C LTR MaLR 0 467 210 1780 154 0 0 chr13 24016076 24016349 -77856820 - AluJb SINE Alu -39 273 1 1600 154 60 101 chr13 24016349 24016551 -77856618 - MLT1C LTR MaLR -257 210 1 2137 130 7 3 chr13 24016854 24017154 -77856015 + AluSx SINE Alu 1 301 -11 448 269 100 0 chr13 24017335 24017495 -77855674 + MER5B DNA MER1_type 3 178 0 508 286 65 39 chr13 24018893 24019125 -77854044 + MIR SINE MIR 30 260 -2 2055 119 7 7 chr13 24019205 24019500 -77853669 - AluJo SINE Alu -12 300 6 334 265 10 0 chr13 24019692 24019790 -77853379 + L1ME3A LINE L1 6072 6170 0 1999 167 0 0 chr13 24020331 24020630 -77852539 - AluJb SINE Alu -11 301 3 438 256 78 85 chr13 24020922 24021180 -77851989 + MIR SINE MIR 7 262 0 238 238 32 16 chr13 24021234 24021297 -77851872 - L1P LINE L1 -2471 3675 3612 1003 224 10 15 chr13 24021328 24021533 -77851636 - AluJo SINE Alu -25 287 84 295 250 83 0 chr13 24022635 24022707 -77850462 - MIR SINE MIR -173 89 12 1813 171 23 0 chr13 24022864 24023163 -77850006 - AluJo SINE Alu -6 306 1 252 268 163 26 chr13 24024217 24024370 -77848799 - MIR SINE MIR -12 250 77 1970 170 10 24 chr13 24025323 24025741 -77847428 + L1MB8 LINE L1 5761 6172 -6 670 280 147 5 chr13 24025922 24026140 -77847029 + MIR SINE MIR 12 260 -2 2217 101 7 16 chr13 24027890 24028197 -77844972 - AluSp SINE Alu -8 305 2 491 286 119 80 chr13 24029047 24029451 -77843718 + L1M4 LINE L1 4600 5037 -1109 2219 114 0 3 chr13 24029451 24029758 -77843411 + AluSc SINE Alu 1 306 -3 491 286 119 80 chr13 24029758 24029957 -77843212 + L1M4 LINE L1 5037 5227 -919 247 252 194 7 chr13 24030079 24030218 -77842951 + L1M2 LINE L1 5399 5563 -737 242 345 0 0 chr13 24030472 24030588 -77842581 + T-rich Low_complexity Low_complexity 1 116 0 440 167 10 0 chr13 24031251 24031347 -77841822 + (TA)n Simple_repeat Simple_repeat 2 98 0 404 174 0 31 chr13 24031717 24031755 -77841414 + MER53 DNA DNA 95 133 -56 2269 109 0 3 chr13 24031755 24032059 -77841110 + AluSx SINE Alu 1 303 -9 404 174 0 31 chr13 24032059 24032118 -77841051 + MER53 DNA DNA 133 189 0 2382 104 0 0 chr13 24032679 24032978 -77840191 + AluSq SINE Alu 1 299 -14 2022 160 0 3 chr13 24033310 24033623 -77839546 + AluSx SINE Alu 1 312 0 208 319 14 0 chr13 24033689 24033761 -77839408 - MIR3 SINE MIR -11 197 125 2234 112 0 7 chr13 24033873 24034169 -77839000 - AluSx SINE Alu -18 294 1 2075 154 0 3 chr13 24034383 24034681 -77838488 - AluSx SINE Alu -15 297 1 1083 150 0 0 chr13 24034723 24034876 -77838293 + FRAM SINE Alu 5 157 -19 2048 102 25 3 chr13 24035544 24035828 -77837341 - AluSc SINE Alu -19 290 1 23 0 0 0 chr13 24035950 24035973 -77837196 + AT_rich Low_complexity Low_complexity 1 23 0 442 223 117 0 chr13 24036156 24036250 -77836919 - L2 LINE L2 -10 3303 3199 21 0 0 0 chr13 24036321 24036342 -77836827 + AT_rich Low_complexity Low_complexity 1 21 0 31 76 0 0 chr13 24036826 24036892 -77836277 + AT_rich Low_complexity Low_complexity 1 66 0 2079 122 27 3 chr13 24037264 24037560 -77835609 + AluSg SINE Alu 5 307 -3 627 142 8 16 chr13 24037563 24037690 -77835479 + GA-rich Low_complexity Low_complexity 3 128 0 1796 158 0 47 chr13 24037722 24038039 -77835130 + AluJo SINE Alu 1 302 -10 1661 176 6 53 chr13 24038105 24038428 -77834741 + AluJb SINE Alu 1 308 -4 2200 98 17 0 chr13 24038959 24039255 -77833914 + AluSx SINE Alu 1 301 -11 2112 131 155 78 chr13 24039258 24039786 -77833383 + L1MC3 LINE L1 7206 7774 -11 806 174 0 0 chr13 24039830 24039962 -77833207 - FLAM_C SINE Alu -1 132 1 311 293 152 30 chr13 24040509 24040673 -77832496 - MIR SINE MIR -71 191 8 1752 176 7 13 chr13 24041869 24042170 -77830999 - AluJo SINE Alu -13 299 1 1984 137 3 3 chr13 24042746 24043045 -77830124 + AluSx SINE Alu 1 299 -13 206 360 64 12 chr13 24043583 24043755 -77829414 + L2 LINE L2 2637 2817 -497 1325 237 27 17 chr13 24043862 24044272 -77828897 + L1M4 LINE L1 4748 5161 -985 2209 78 62 0 chr13 24044372 24044694 -77828475 + L1MC1 LINE L1 5538 5879 -454 1417 123 24 44 chr13 24044694 24044944 -77828225 + L1MC1 LINE L1 6083 6328 -5 2308 95 0 0 chr13 24045420 24045714 -77827455 - AluSg SINE Alu -16 294 1 852 141 8 0 chr13 24045718 24045846 -77827323 - FLAM_C SINE Alu 0 133 5 1715 155 24 3 chr13 24046027 24046323 -77826846 + AluJb SINE Alu 1 302 -10 1918 150 67 3 chr13 24046390 24046717 -77826452 + MER7A DNA MER2_type 1 346 0 965 172 53 6 chr13 24046964 24047133 -77826036 + AluSx SINE Alu 42 218 -94 1638 138 106 0 chr13 24048396 24048678 -77824491 - AluSx SINE Alu 0 312 1 22 35 0 0 chr13 24049024 24049053 -77824116 + AT_rich Low_complexity Low_complexity 1 29 0 773 101 72 203 chr13 24049054 24049136 -77824033 + L1 LINE L1 4558 4649 -1497 2338 95 0 0 chr13 24049136 24049432 -77823737 - AluSg SINE Alu -14 296 1 773 101 72 203 chr13 24049432 24049463 -77823706 + L1 LINE L1 4649 4682 -1464 769 174 0 0 chr13 24049463 24049578 -77823591 + FLAM_C SINE Alu 1 115 -18 773 101 72 203 chr13 24049578 24049739 -77823430 + L1 LINE L1 4682 4797 -1349 441 239 0 0 chr13 24049739 24049827 -77823342 - L2 LINE L2 -37 3276 3189 548 275 88 0 chr13 24049882 24050042 -77823127 + FAM SINE Alu 1 174 -11 191 233 0 47 chr13 24050374 24050417 -77822752 - MER5B DNA MER1_type -99 79 39 1070 178 11 0 chr13 24050512 24050697 -77822472 + AluJo SINE Alu 1 187 -125 183 42 0 0 chr13 24050768 24050792 -77822377 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr13 24051058 24051088 -77822081 + AT_rich Low_complexity Low_complexity 1 30 0 199 371 136 14 chr13 24052200 24052340 -77820829 - L2 LINE L2 0 3272 3116 189 414 36 18 chr13 24052613 24052724 -77820445 + MIR SINE MIR 18 130 -132 180 0 0 0 chr13 24053602 24053622 -77819547 + (A)n Simple_repeat Simple_repeat 1 20 0 5170 198 92 35 chr13 24055709 24056877 -77816292 + Charlie1a DNA MER1_type 1 1260 -1501 683 195 8 23 chr13 24056877 24057005 -77816164 - FLAM_A SINE Alu -7 126 1 5170 198 92 35 chr13 24057005 24057207 -77815962 + Charlie1a DNA MER1_type 1260 1449 -6 266 305 97 7 chr13 24057257 24057411 -77815758 - L1ME LINE L1 -422 5699 5532 25 51 0 0 chr13 24057533 24057572 -77815597 + AT_rich Low_complexity Low_complexity 1 39 0 607 167 0 0 chr13 24057794 24057896 -77815273 - Charlie1 DNA MER1_type 0 2761 2660 759 178 0 22 chr13 24058042 24058177 -77814992 + AluJo SINE Alu 1 132 -170 751 201 30 37 chr13 24058206 24058370 -77814799 + AluJo SINE Alu 120 282 -30 186 43 0 0 chr13 24058407 24058430 -77814739 + (TG)n Simple_repeat Simple_repeat 1 23 0 217 234 208 0 chr13 24058570 24058647 -77814522 + L2 LINE L2 3221 3313 0 1881 163 0 0 chr13 24059371 24059659 -77813510 - AluJb SINE Alu -21 291 4 538 228 31 8 chr13 24059683 24059810 -77813359 - FLAM_A SINE Alu -3 130 1 1970 144 0 19 chr13 24059944 24060256 -77812913 + AluSx SINE Alu 1 306 -6 1761 161 3 47 chr13 24060450 24060772 -77812397 - AluJo SINE Alu 0 312 5 31 26 0 0 chr13 24060882 24060920 -77812249 + AT_rich Low_complexity Low_complexity 1 38 0 477 177 0 0 chr13 24061009 24061088 -77812081 - Charlie2 DNA MER1_type -2474 308 230 305 226 43 0 chr13 24061250 24061343 -77811826 + L1ME3 LINE L1 5727 5823 -339 307 265 56 51 chr13 24061355 24061551 -77811618 + L1ME3 LINE L1 5871 6067 -95 23 33 0 0 chr13 24061779 24061809 -77811360 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr13 24061848 24061883 -77811286 + AT_rich Low_complexity Low_complexity 1 35 0 206 312 37 46 chr13 24063310 24063419 -77809750 + MER5A DNA MER1_type 7 114 -75 2284 90 3 0 chr13 24064408 24064696 -77808473 + AluSp SINE Alu 5 293 -20 473 267 170 59 chr13 24064818 24065205 -77807964 - L1ME LINE L1 -421 5743 5299 189 0 0 0 chr13 24065707 24065728 -77807441 + (T)n Simple_repeat Simple_repeat 1 21 0 760 160 8 0 chr13 24065802 24065947 -77807222 - FLAM_C SINE Alu 0 146 1 2019 120 34 0 chr13 24066038 24066330 -77806839 - AluSx SINE Alu -10 302 1 1389 136 23 0 chr13 24066542 24066762 -77806407 - AluJb SINE Alu -22 290 66 1130 113 9 113 chr13 24067092 24067322 -77805847 - L1PA16 LINE L1 -12 6154 5949 1172 194 13 17 chr13 24067478 24067710 -77805459 - MIR SINE MIR -29 233 3 265 222 148 0 chr13 24067732 24067813 -77805356 + L1ME LINE L1 5689 5781 -340 633 258 45 0 chr13 24068390 24068522 -77804647 + MIR SINE MIR 36 173 -89 280 301 68 30 chr13 24068682 24068815 -77804354 - MER112 DNA MER1_type -121 139 2 28 29 0 0 chr13 24069218 24069253 -77803916 + AT_rich Low_complexity Low_complexity 1 35 0 431 299 0 0 chr13 24069666 24069763 -77803406 - MIR3 SINE MIR -27 181 85 213 272 29 48 chr13 24070090 24070193 -77802976 - MIR3 SINE MIR -41 167 67 213 241 63 38 chr13 24072711 24072790 -77800379 - L2 LINE L2 -5 3308 3228 1469 203 11 18 chr13 24072908 24073189 -77799980 + AluJo SINE Alu 1 279 -33 344 290 107 8 chr13 24074787 24074918 -77798251 + MIR SINE MIR 1 144 -118 266 236 163 24 chr13 24074923 24075046 -77798123 + MIR SINE MIR 117 256 -6 1576 37 11 0 chr13 24075564 24075753 -77797416 - AluY SINE Alu -12 299 109 234 0 0 0 chr13 24075853 24075879 -77797290 + (TA)n Simple_repeat Simple_repeat 1 26 0 504 241 115 9 chr13 24076219 24076368 -77796801 + MIR3 SINE MIR 39 208 0 24 53 0 0 chr13 24078473 24078511 -77794658 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 24079530 24079560 -77793609 + AT_rich Low_complexity Low_complexity 1 30 0 1087 137 36 0 chr13 24080350 24080518 -77792651 - AluSg/x SINE Alu -10 302 129 857 188 6 29 chr13 24081086 24081256 -77791913 + FRAM SINE Alu 1 166 0 21 71 0 0 chr13 24082019 24082061 -77791108 + AT_rich Low_complexity Low_complexity 1 42 0 263 258 30 0 chr13 24082118 24082184 -77790985 - L2 LINE L2 -6 3307 3240 326 263 132 26 chr13 24082452 24082604 -77790565 - MIR SINE MIR 0 262 95 345 309 24 42 chr13 24082707 24082875 -77790294 + MIR SINE MIR 68 232 -30 552 227 106 7 chr13 24082929 24083070 -77790099 + MIR SINE MIR 90 244 -18 2437 67 7 0 chr13 24083405 24083702 -77789467 + AluY SINE Alu 1 299 -12 180 0 0 0 chr13 24083762 24083782 -77789387 + (CATTC)n Simple_repeat Simple_repeat 5 24 0 2087 125 0 3 chr13 24084050 24084339 -77788830 + AluSg SINE Alu 2 289 -21 24 85 0 0 chr13 24084418 24084477 -77788692 + AT_rich Low_complexity Low_complexity 1 59 0 279 0 0 0 chr13 24084766 24084797 -77788372 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 5835 60 21 47 chr13 24084797 24085769 -77787400 + SVA Other Other 50 866 -520 1840 143 3 41 chr13 24085882 24086196 -77786973 - MER1B DNA MER1_type -37 302 1 233 257 122 0 chr13 24086263 24086337 -77786832 - L2 LINE L2 -24 3289 3207 344 302 158 14 chr13 24086378 24086593 -77786576 - L2 LINE L2 -241 3072 2827 1627 187 20 7 chr13 24086790 24087084 -77786085 + AluJb SINE Alu 1 298 -14 321 275 147 0 chr13 24087125 24087234 -77785935 - MER5A DNA MER1_type -22 167 43 1580 153 43 0 chr13 24087430 24087685 -77785484 - AluSx SINE Alu -24 288 23 42550 59 7 1 chr13 24087702 24093808 -77779361 - L1PA5 LINE L1 0 6154 11 1505 201 21 0 chr13 24093822 24094106 -77779063 - AluJb SINE Alu -22 290 1 456 261 197 46 chr13 24094184 24094555 -77778614 + L2 LINE L2 1729 2155 -1159 403 339 104 32 chr13 24094833 24095304 -77777865 + L2 LINE L2 2726 3221 -51 3287 153 59 65 chr13 24095409 24095960 -77777209 - L1MB2 LINE L1 -1 6170 5622 2099 110 21 0 chr13 24095960 24096242 -77776927 - AluSg SINE Alu -22 288 1 3287 153 59 65 chr13 24096242 24096418 -77776751 - L1MB2 LINE L1 -549 5622 5447 2214 125 3 13 chr13 24097320 24097633 -77775536 - AluSx SINE Alu -2 310 1 823 231 0 0 chr13 24097963 24098123 -77775046 + FRAM SINE Alu 1 160 -6 21 0 0 0 chr13 24098444 24098465 -77774704 + AT_rich Low_complexity Low_complexity 1 21 0 2235 116 0 0 chr13 24098467 24098761 -77774408 + AluSx SINE Alu 3 296 -16 359 266 58 91 chr13 24100397 24100551 -77772618 - L2 LINE L2 -1 3271 3123 247 276 47 39 chr13 24100742 24100869 -77772300 + L2 LINE L2 2932 3059 -213 1244 149 9 33 chr13 24101083 24101298 -77771871 - AluJb SINE Alu -17 295 86 2950 189 80 14 chr13 24101385 24102011 -77771158 - L1MB8 LINE L1 -2 6176 5510 491 296 177 24 chr13 24102061 24102455 -77770714 - L2 LINE L2 -94 3219 2770 1112 150 22 75 chr13 24102543 24102769 -77770400 - AluJo SINE Alu -12 300 87 1313 132 118 87 chr13 24102776 24103063 -77770106 - AluSg SINE Alu -14 296 1 2247 102 0 3 chr13 24104082 24104385 -77768784 + AluSx SINE Alu 1 302 -10 654 41 0 0 chr13 24105647 24105720 -77767449 - tRNA-Glu-GAA tRNA tRNA -2 73 1 333 118 0 0 chr13 24105816 24105867 -77767302 + (CCG)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chr13 24107007 24107035 -77766134 + (T)n Simple_repeat Simple_repeat 1 28 0 1447 247 113 23 chr13 24108959 24109437 -77763732 - L1MC4a LINE L1 -1775 6033 5513 189 0 0 0 chr13 24110200 24110221 -77762948 + (A)n Simple_repeat Simple_repeat 1 21 0 467 288 105 9 chr13 24111601 24111830 -77761339 - L1ME LINE L1 -336 5785 5535 1365 144 144 4 chr13 24111903 24112160 -77761009 - AluJb SINE Alu -15 297 5 1573 150 7 37 chr13 24112309 24112582 -77760587 + AluJo SINE Alu 1 265 -47 796 158 0 15 chr13 24112955 24113088 -77760081 - L1PB4 LINE L1 0 6156 6026 277 265 100 80 chr13 24113153 24113402 -77759767 - L1ME LINE L1 -1310 4836 4583 181 30 91 0 chr13 24113539 24113572 -77759597 + A-rich Low_complexity Low_complexity 3 38 0 970 120 0 8 chr13 24114155 24114288 -77758881 + AluSq/x SINE Alu 1 132 -181 1969 95 4 0 chr13 24114291 24114543 -77758626 + AluY SINE Alu 1 253 -58 621 108 0 0 chr13 24114543 24114626 -77758543 + AluY SINE Alu 209 291 -20 1237 128 0 0 chr13 24114626 24114814 -77758355 + AluSp SINE Alu 121 308 -5 342 250 0 0 chr13 24115157 24115221 -77757948 + L2 LINE L2 3186 3249 -23 1976 137 0 16 chr13 24116671 24116978 -77756191 + AluSg SINE Alu 1 302 -8 2493 139 58 15 chr13 24117180 24117590 -77755579 - MSTA LTR MaLR 0 428 1 207 180 49 82 chr13 24118080 24118141 -77755028 - MIR3 SINE MIR -28 180 122 2114 104 13 10 chr13 24118142 24118440 -77754729 + AluSq SINE Alu 1 299 -14 2175 92 34 0 chr13 24118442 24118735 -77754434 + AluSx SINE Alu 1 303 -9 2311 71 7 10 chr13 24118845 24119140 -77754029 - AluY SINE Alu -15 296 3 426 313 149 9 chr13 24119402 24119616 -77753553 + MIR SINE MIR 6 249 -13 1693 130 0 0 chr13 24119629 24119867 -77753302 + AluSx SINE Alu 6 243 -69 31 0 0 0 chr13 24119867 24119898 -77753271 + AT_rich Low_complexity Low_complexity 1 31 0 379 272 39 0 chr13 24119986 24120089 -77753080 - MER94 DNA DNA 0 134 28 1610 197 3 10 chr13 24120292 24120586 -77752583 - AluJo SINE Alu -14 298 7 2218 113 0 13 chr13 24121181 24121492 -77751677 - AluSc SINE Alu -2 307 1 1629 158 27 30 chr13 24121920 24122256 -77750913 + L1PB4 LINE L1 3679 4013 -2133 989 170 0 0 chr13 24122257 24122416 -77750753 + AluSg/x SINE Alu 137 295 -17 5767 178 43 26 chr13 24122418 24123457 -77749712 + L1PB4 LINE L1 4003 5023 -1133 2371 106 3 0 chr13 24123457 24123769 -77749400 + AluSp SINE Alu 1 313 0 5767 178 43 26 chr13 24123769 24124200 -77748969 + L1PB4 LINE L1 5023 5445 -711 1868 102 117 11 chr13 24124200 24124474 -77748695 + AluSx SINE Alu 1 303 -9 5767 178 43 26 chr13 24124474 24125133 -77748036 + L1PB4 LINE L1 5445 6152 -4 2095 103 4 0 chr13 24125845 24126118 -77747051 + AluSc SINE Alu 18 291 -18 1815 172 7 3 chr13 24126127 24126430 -77746739 + AluJb SINE Alu 1 304 -8 913 182 0 0 chr13 24126576 24126735 -77746434 + FRAM SINE Alu 1 158 -18 1485 168 0 4 chr13 24127085 24127323 -77745846 - AluJb SINE Alu -75 237 1 349 218 158 45 chr13 24127972 24128105 -77745064 + MIR SINE MIR 104 251 -11 347 369 78 18 chr13 24128114 24128331 -77744838 + L3 LINE CR1 1329 1558 -19 214 321 0 12 chr13 24130117 24130198 -77742971 - L2 LINE L2 -964 2350 2271 849 160 0 0 chr13 24130399 24130518 -77742651 + FLAM_C SINE Alu 1 119 -14 1792 166 14 3 chr13 24130559 24130854 -77742315 - AluJo SINE Alu -10 302 5 474 192 10 120 chr13 24131290 24131498 -77741671 + L1MC5 LINE L1 7744 7928 -33 206 241 0 0 chr13 24131968 24132022 -77741147 + A-rich Low_complexity Low_complexity 5 58 0 21 0 0 0 chr13 24132038 24132059 -77741110 + AT_rich Low_complexity Low_complexity 1 21 0 2132 126 0 10 chr13 24132059 24132360 -77740809 + AluSx SINE Alu 1 298 -14 2209 115 14 0 chr13 24133374 24133670 -77739499 + AluSq SINE Alu 1 300 -13 2296 87 7 0 chr13 24135281 24135570 -77737599 + AluSx SINE Alu 11 301 -11 1239 134 0 0 chr13 24135571 24135750 -77737419 + AluSg/x SINE Alu 126 304 -8 1525 199 4 0 chr13 24135831 24136097 -77737072 + AluJo SINE Alu 26 292 -20 275 316 148 7 chr13 24136218 24136373 -77736796 - MIR SINE MIR -7 255 79 457 305 121 51 chr13 24136508 24136866 -77736303 + L2 LINE L2 2835 3224 -89 1408 160 63 63 chr13 24136866 24137166 -77736003 - AluJo SINE Alu -12 300 1 457 305 121 51 chr13 24137166 24137197 -77735972 + L2 LINE L2 3224 3251 -62 23 0 0 0 chr13 24137451 24137474 -77735695 + AT_rich Low_complexity Low_complexity 1 23 0 546 217 106 81 chr13 24137623 24137858 -77735311 - MIR SINE MIR 0 262 22 959 113 35 0 chr13 24137875 24138016 -77735153 + AluSg/x SINE Alu 157 302 -10 248 266 85 43 chr13 24138058 24138152 -77735017 + MIR SINE MIR 50 147 -61 693 198 0 8 chr13 24138516 24138637 -77734532 + FLAM_C SINE Alu 1 120 -13 33 0 0 0 chr13 24138881 24138914 -77734255 + AT_rich Low_complexity Low_complexity 1 33 0 2104 84 3 14 chr13 24141201 24141487 -77731682 - AluSc SINE Alu -26 283 1 2237 107 3 0 chr13 24141859 24142158 -77731011 - AluSp SINE Alu -10 303 4 3583 126 18 27 chr13 24142319 24142386 -77730783 + L1PA15 LINE L1 5624 5690 -475 1403 133 152 4 chr13 24142386 24142492 -77730677 + AluSq SINE Alu 1 90 -223 378 0 0 0 chr13 24142492 24142534 -77730635 + (CA)n Simple_repeat Simple_repeat 2 43 0 1403 133 152 4 chr13 24142534 24142683 -77730486 + AluSq SINE Alu 90 294 -19 3583 126 18 27 chr13 24142683 24143162 -77730007 + L1PA15 LINE L1 5690 6165 0 2482 106 116 40 chr13 24144027 24144247 -77728922 - MSTA LTR MaLR 0 428 226 2055 116 28 0 chr13 24144247 24144531 -77728638 - AluSg SINE Alu -17 293 2 2482 106 116 40 chr13 24144531 24144708 -77728461 - MSTA LTR MaLR -202 226 1 2545 52 0 7 chr13 24145467 24145775 -77727394 - AluY SINE Alu -5 306 1 404 274 36 143 chr13 24145893 24146404 -77726765 - L2 LINE L2 -94 3219 2655 198 71 0 0 chr13 24146404 24146432 -77726737 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 404 274 36 143 chr13 24146432 24146518 -77726651 - L2 LINE L2 -658 2655 2698 1521 191 0 4 chr13 24146518 24146769 -77726400 + AluJb SINE Alu 1 250 -62 404 274 36 143 chr13 24146769 24146799 -77726370 - L2 LINE L2 -614 2699 2667 2261 189 38 5 chr13 24146923 24147372 -77725797 + MER101 LTR ERV1 11 474 0 889 204 7 0 chr13 24147449 24147601 -77725568 + FAM SINE Alu 13 165 -20 278 225 94 69 chr13 24147653 24147740 -77725429 + L2 LINE L2 1932 2026 -1288 3372 145 53 8 chr13 24147740 24148270 -77724899 - MER41C LTR ERV1 0 554 1 278 225 94 69 chr13 24148270 24148342 -77724827 + L2 LINE L2 2026 2095 -1219 203 289 62 52 chr13 24148410 24148507 -77724662 - L2 LINE L2 -11 3302 3205 193 313 84 23 chr13 24148533 24148664 -77724505 + L2 LINE L2 2232 2370 -944 224 30 30 0 chr13 24148762 24148795 -77724374 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1972 137 17 10 chr13 24149051 24149351 -77723818 + AluJo SINE Alu 1 302 -10 1523 186 249 57 chr13 24149386 24149546 -77723623 + LTR48 LTR ERV1 1 129 -658 2153 104 0 11 chr13 24149546 24149855 -77723314 + AluSx SINE Alu 1 306 0 1523 186 249 57 chr13 24149855 24150112 -77723057 + LTR48 LTR ERV1 129 335 -452 2152 134 0 0 chr13 24150112 24150410 -77722759 - AluSx SINE Alu -14 298 1 1523 186 249 57 chr13 24150410 24150645 -77722524 + LTR48 LTR ERV1 335 781 -6 323 239 76 0 chr13 24150775 24150867 -77722302 - MIR SINE MIR -15 247 149 1976 95 51 14 chr13 24150870 24151166 -77722003 + LTR23 LTR ERV1 1 307 -130 584 183 135 0 chr13 24151167 24151271 -77721898 + AluJo/FLAM SINE Alu 2 119 -193 2461 67 0 0 chr13 24151271 24151571 -77721598 - AluY SINE Alu -11 300 1 579 149 26 6 chr13 24151592 24151737 -77721432 + LTR56 LTR ERV1 318 467 0 1665 209 72 32 chr13 24151737 24152313 -77720856 + LTR56-int LTR ERV1 1 745 -4378 252 250 19 74 chr13 24152628 24152667 -77720502 + CT-rich Low_complexity Low_complexity 1 41 -61 2019 117 28 3 chr13 24152667 24152750 -77720419 - AluSx SINE Alu -14 298 218 189 0 0 0 chr13 24152750 24152771 -77720398 + (CA)n Simple_repeat Simple_repeat 1 21 0 2019 117 28 3 chr13 24152771 24152978 -77720191 - AluSx SINE Alu -94 218 1 252 250 19 74 chr13 24152978 24153046 -77720123 + CT-rich Low_complexity Low_complexity 41 102 0 1946 151 3 3 chr13 24154000 24154298 -77718871 + AluSx SINE Alu 1 298 -14 1256 190 69 84 chr13 24154312 24154644 -77718525 + LTR49-int LTR ERV1 2081 2407 -3924 * 1986 170 87 48 chr13 24154641 24155160 -77718009 - MER31-int LTR ERV1 -1489 4842 4304 786 199 63 101 chr13 24155153 24155500 -77717669 - MER31-int LTR ERV1 -1900 3036 2729 * 699 208 0 8 chr13 24155502 24155627 -77717542 + FLAM_C SINE Alu 1 124 -9 1420 214 27 10 chr13 24155636 24155930 -77717239 + AluJo SINE Alu 7 305 -7 861 221 52 0 chr13 24155938 24156092 -77717077 + FRAM SINE Alu 1 162 -4 1433 169 61 26 chr13 24156112 24156500 -77716669 - MER65-int LTR ERV1 -1941 4657 2474 880 168 15 50 chr13 24156549 24156751 -77716418 - MER65-int LTR ERV1 -2868 3730 3536 1425 176 43 109 chr13 24156838 24157423 -77715746 - MER65-int LTR ERV1 -4283 2475 1930 2429 101 0 0 chr13 24157431 24157738 -77715431 - AluSc SINE Alu -2 307 1 455 171 79 66 chr13 24157752 24157904 -77715265 - MER65-int LTR ERV1 -6371 1749 1596 3502 184 84 68 chr13 24157954 24158702 -77714467 - MER65-int LTR ERV1 -2377 2494 1610 189 0 0 0 chr13 24158702 24158723 -77714446 + (CA)n Simple_repeat Simple_repeat 2 22 0 3502 184 84 68 chr13 24158723 24158931 -77714238 - MER65-int LTR ERV1 -3261 1610 1407 1101 189 7 65 chr13 24158933 24159208 -77713961 - AluJo SINE Alu -23 289 31 830 164 5 72 chr13 24159209 24159272 -77713897 - MER65-int LTR ERV1 -3316 1555 1489 2477 73 10 0 chr13 24159272 24159573 -77713596 - AluY SINE Alu -7 304 1 830 164 5 72 chr13 24159573 24159704 -77713465 - MER65-int LTR ERV1 -3382 1489 1374 813 222 10 10 chr13 24159785 24159979 -77713190 - MER65-int LTR ERV1 -3531 1340 1147 1764 187 7 0 chr13 24160400 24160700 -77712469 + AluJb SINE Alu 1 302 -10 2542 71 0 10 chr13 24160754 24161065 -77712104 - AluSp SINE Alu -5 308 1 9701 98 8 21 chr13 24161083 24161183 -77711986 - HSMAR1 DNA Mariner -1 1286 1186 2217 105 0 3 chr13 24161183 24161477 -77711692 + AluSg SINE Alu 1 293 -17 2461 67 0 10 chr13 24161477 24161789 -77711380 + AluY SINE Alu 1 309 -2 9701 98 8 21 chr13 24161789 24162340 -77710829 - HSMAR1 DNA Mariner -100 1187 630 2196 112 7 10 chr13 24162340 24162643 -77710526 + AluSx SINE Alu 1 302 -10 9701 98 8 21 chr13 24162643 24163292 -77709877 - HSMAR1 DNA Mariner -657 630 1 2416 134 98 3 chr13 24164381 24164770 -77708399 + MSTB LTR MaLR 1 426 0 2159 78 55 42 chr13 24165769 24166077 -77707092 - AluSx SINE Alu 0 312 1 2459 159 128 0 chr13 24166478 24166917 -77706252 - LTR44 LTR ERV1 0 519 25 1802 126 4 0 chr13 24166923 24167177 -77705992 + AluSq SINE Alu 1 255 -58 427 140 0 0 chr13 24167177 24167234 -77705935 + AluSc SINE Alu 227 283 -26 525 118 0 0 chr13 24167307 24167383 -77705786 - AluJ/FRAM SINE Alu -5 307 232 1825 108 77 39 chr13 24167386 24167672 -77705497 - AluSx SINE Alu -15 297 1 476 151 0 0 chr13 24167676 24167749 -77705420 - AluJo SINE Alu -172 140 68 5622 186 43 23 chr13 24167795 24167999 -77705170 + MER21-int LTR ERV1 1648 1846 -2345 2543 21 41 0 chr13 24167999 24168290 -77704879 + AluY SINE Alu 1 303 -8 5622 186 43 23 chr13 24168290 24169165 -77704004 + MER21-int LTR ERV1 1846 2749 -1442 409 248 52 46 chr13 24169165 24169318 -77703851 - LTR38 LTR ERV1 0 556 403 1046 195 29 10 chr13 24169412 24169617 -77703552 - AluJo SINE Alu -18 294 86 2528 62 0 7 chr13 24169717 24170021 -77703148 - AluY SINE Alu -9 302 1 5140 166 24 38 chr13 24170164 24171088 -77702081 + MER21-int LTR ERV1 2746 3656 -535 1494 108 23 9 chr13 24171088 24171302 -77701867 - MER4E LTR ERV1 0 779 563 * 5598 65 18 22 chr13 24171301 24171641 -77701528 - MER4E LTR ERV1 -5 761 421 2110 125 3 0 chr13 24171641 24171938 -77701231 + AluSg SINE Alu 1 298 -12 5598 65 18 22 chr13 24171938 24172361 -77700808 - MER4E LTR ERV1 -345 421 1 2141 113 44 76 chr13 24172363 24172586 -77700583 - MER4B LTR ERV1 -214 396 190 2333 118 0 3 chr13 24172586 24172900 -77700269 + AluSq SINE Alu 1 313 0 2141 113 44 76 chr13 24172900 24173085 -77700084 - MER4B LTR ERV1 -420 190 1 1049 162 57 29 chr13 24173085 24173295 -77699874 + MER21-int LTR ERV1 3653 3868 -323 2404 103 65 0 chr13 24173300 24173641 -77699528 + MER51B LTR ERV1 15 377 0 678 146 6 4 chr13 24173653 24173836 -77699333 + MER21B-int LTR ERV1 3873 4135 -56 2828 166 62 2 chr13 24173910 24174371 -77698798 + MER21B LTR ERV1 1 492 -371 3770 124 144 17 chr13 24174371 24174444 -77698725 - LTR8A LTR ERV1 0 727 665 1933 142 3 17 chr13 24174444 24174746 -77698423 + AluJb SINE Alu 1 298 -14 3770 124 144 17 chr13 24174746 24175317 -77697852 - LTR8A LTR ERV1 -62 665 1 288 217 0 0 chr13 24175348 24175394 -77697775 + L2 LINE L2 3247 3292 -21 2145 129 0 3 chr13 24175404 24175698 -77697471 + AluSx SINE Alu 1 293 -19 500 198 45 9 chr13 24175817 24175928 -77697241 + LTR37A LTR ERV1 83 197 -229 2857 102 19 24 chr13 24175955 24176083 -77697086 - MER75 DNA T2_type 0 514 387 2232 116 0 3 chr13 24176083 24176377 -77696792 + AluSx SINE Alu 1 293 -19 2319 85 0 0 chr13 24176377 24176670 -77696499 + AluY SINE Alu 1 294 -17 2857 102 19 24 chr13 24176670 24176963 -77696206 - MER75 DNA T2_type -125 389 94 1212 133 118 0 chr13 24176963 24177158 -77696011 + AluSx SINE Alu 1 218 -94 199 0 0 61 chr13 24177181 24177214 -77695955 + (TTA)n Simple_repeat Simple_repeat 2 32 0 620 149 9 28 chr13 24177214 24177313 -77695856 - MER75 DNA T2_type -415 99 1 524 208 110 29 chr13 24177318 24177491 -77695678 + LTR37A LTR ERV1 240 426 0 858 152 7 26 chr13 24177578 24177726 -77695443 + LTR26B LTR ERV1 1 145 -386 664 100 0 20 chr13 24177726 24177826 -77695343 + MER4A LTR ERV1 1 98 -566 1384 138 23 140 chr13 24177826 24178021 -77695148 + MER4A LTR ERV1 261 450 -214 2239 80 4 0 chr13 24178021 24178297 -77694872 - AluSp SINE Alu -13 300 24 1384 138 23 140 chr13 24178297 24178490 -77694679 + MER4A LTR ERV1 450 664 0 2363 162 26 85 chr13 24178493 24178534 -77694635 + MER4A-int LTR ERV1 1 43 -6555 2495 61 0 0 chr13 24178534 24178831 -77694338 - AluY SINE Alu -14 297 1 2363 162 26 85 chr13 24178831 24179470 -77693699 + MER4A-int LTR ERV1 43 837 -5761 1407 235 70 25 chr13 24179529 24179887 -77693282 + MER4A-int LTR ERV1 1851 2224 -4107 4569 112 43 8 chr13 24179892 24180779 -77692390 + MER4B-int LTR ERV1 190 1142 -5616 342 0 0 0 chr13 24180783 24180821 -77692348 + (TG)n Simple_repeat Simple_repeat 2 39 0 2123 110 10 16 chr13 24180837 24181147 -77692022 + AluSq SINE Alu 1 308 -5 4205 96 65 7 chr13 24181152 24181858 -77691311 + MER4B-int LTR ERV1 1749 2495 -4103 1547 114 84 0 chr13 24181858 24182095 -77691074 - LTR8 LTR ERV1 -434 257 1 3912 132 76 48 chr13 24182095 24182378 -77690791 + MER4B-int LTR ERV1 2737 3011 -3587 2241 122 0 10 chr13 24182378 24182690 -77690479 + AluSg SINE Alu 1 309 -1 3912 132 76 48 chr13 24182690 24183300 -77689869 + MER4B-int LTR ERV1 3011 3655 -2943 926 150 0 0 chr13 24183300 24183440 -77689729 - AluSg/x SINE Alu 0 310 171 1314 84 9 33 chr13 24183440 24183650 -77689519 + MER4B-int LTR ERV1 3271 3350 -1665 399 57 0 0 chr13 24183650 24183703 -77689466 - LTR9 LTR ERV1 -559 53 1 * 1157 138 0 16 chr13 24183703 24183881 -77689288 + LTR26E LTR ERV1 165 339 -283 286 87 24 0 chr13 24183880 24183928 -77689241 + AluJb SINE Alu 90 131 -171 * 1654 191 17 0 chr13 24184001 24184289 -77688880 - AluJb SINE Alu -19 293 1 1304 193 65 84 chr13 24184370 24184854 -77688315 + L1MC5 LINE L1 7128 7602 -359 2436 58 3 16 chr13 24184854 24185163 -77688006 - AluY SINE Alu -5 306 2 1304 193 65 84 chr13 24185163 24185228 -77687941 + L1MC5 LINE L1 7602 7667 -294 1894 166 10 0 chr13 24185244 24185546 -77687623 - AluSx SINE Alu -7 305 1 571 136 218 36 chr13 24185619 24185729 -77687440 + AluJo/FLAM SINE Alu 2 131 -181 2355 101 3 0 chr13 24185729 24186036 -77687133 + AluSc SINE Alu 1 308 -1 1137 188 28 98 chr13 24186043 24186384 -77686785 - MLT1A2 LTR MaLR -41 333 13 2361 85 7 0 chr13 24186440 24186735 -77686434 - AluSp SINE Alu -16 297 1 514 254 40 8 chr13 24186872 24186998 -77686171 + L2 LINE L2 3182 3311 -2 606 243 136 15 chr13 24187033 24187239 -77685930 + MIR SINE MIR 5 235 -27 21 0 0 0 chr13 24187649 24187670 -77685499 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr13 24188049 24188072 -77685097 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 712 202 8 0 chr13 24189072 24189196 -77683973 - FLAM_A SINE Alu -8 125 1 412 254 22 15 chr13 24189379 24189513 -77683656 - L1ME4a LINE L1 -1 6120 5986 2190 111 3 10 chr13 24189514 24189820 -77683349 - AluSx SINE Alu -7 305 2 237 336 85 44 chr13 24190100 24190279 -77682890 + MIR3 SINE MIR 17 205 -3 2172 111 0 0 chr13 24190527 24190824 -77682345 - AluSq SINE Alu -16 297 1 611 177 92 46 chr13 24191503 24191633 -77681536 - FRAM SINE Alu -16 160 25 219 315 10 98 chr13 24191928 24192131 -77681038 - L2 LINE L2 -84 3188 3004 2370 80 3 10 chr13 24192146 24192458 -77680711 - AluSx SINE Alu -2 310 1 1995 191 63 14 chr13 24192458 24193274 -77679895 - L1MC4 LINE L1 -743 5403 4969 201 108 0 0 chr13 24193275 24193312 -77679857 + (T)n Simple_repeat Simple_repeat 1 37 0 475 111 0 0 chr13 24193328 24193391 -77679778 - FRAM/FAM SINE Alu -94 82 20 445 210 34 17 chr13 24193935 24194054 -77679115 - MIR SINE MIR 0 262 142 1327 164 0 9 chr13 24194062 24194275 -77678894 - AluJo SINE Alu -16 296 86 465 246 102 0 chr13 24194294 24194412 -77678757 - MIR SINE MIR -120 142 13 261 349 186 37 chr13 24194693 24195048 -77678121 + L2 LINE L2 2855 3262 -10 2407 78 3 0 chr13 24195252 24195547 -77677622 + AluSg SINE Alu 1 296 -14 370 386 43 5 chr13 24195575 24195785 -77677384 + L2 LINE L2 3015 3232 -40 2099 136 0 0 chr13 24196171 24196466 -77676703 - AluSx SINE Alu -17 295 1 1062 178 30 12 chr13 24196495 24196664 -77676505 + FAM SINE Alu 1 172 -3 350 286 150 7 chr13 24196684 24196831 -77676338 + Charlie8 DNA MER1_type 99 266 -2151 2132 120 7 0 chr13 24199696 24199988 -77673181 + AluSx SINE Alu 1 294 -18 234 0 0 0 chr13 24200551 24200577 -77672592 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 518 262 61 0 chr13 24200759 24200923 -77672246 - MIR SINE MIR -87 175 2 1861 112 101 0 chr13 24201110 24201378 -77671791 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr13 24201865 24201886 -77671283 + AT_rich Low_complexity Low_complexity 1 21 0 1926 128 49 23 chr13 24201962 24202266 -77670903 + AluSx SINE Alu 1 312 0 2441 78 0 0 chr13 24202321 24202616 -77670553 - AluY SINE Alu -16 295 1 1307 207 11 11 chr13 24203193 24203454 -77669715 + ERVL LTR ERVL 1345 1605 -4159 1771 136 0 0 chr13 24203454 24203697 -77669472 + AluSx SINE Alu 1 243 -69 5460 171 30 21 chr13 24203698 24204666 -77668503 + ERVL LTR ERVL 1785 2761 -3003 269 244 13 26 chr13 24204713 24204791 -77668378 - MIR SINE MIR -29 233 157 340 274 145 8 chr13 24204889 24205006 -77668163 - MIR SINE MIR -89 173 41 1762 153 10 17 chr13 24206331 24206626 -77666543 + AluJb SINE Alu 1 293 -19 1714 233 149 13 chr13 24206912 24207389 -77665780 - MLT1F LTR MaLR 0 542 1 598 294 87 32 chr13 24207475 24207822 -77665347 + HAL1b LINE L1 293 658 -690 2234 237 70 66 chr13 24208107 24208199 -77664970 + L1MC5 LINE L1 6476 6566 -1395 1987 217 95 29 chr13 24208199 24208450 -77664719 - LTR40a LTR ERVL -4 515 282 1767 153 13 45 chr13 24208450 24208625 -77664544 - AluJo SINE Alu -9 303 141 2318 106 0 6 chr13 24208625 24208937 -77664232 - AluSg SINE Alu 0 310 1 1767 153 13 45 chr13 24208937 24209074 -77664095 - AluJo SINE Alu -171 141 1 1987 217 95 29 chr13 24209074 24209305 -77663864 - LTR40a LTR ERVL -237 282 1 2234 237 70 66 chr13 24209305 24210247 -77662922 + L1MC5 LINE L1 6566 7537 -424 313 252 9 61 chr13 24210320 24210435 -77662734 + L1ME3A LINE L1 5962 6070 -100 1957 147 0 3 chr13 24210532 24210832 -77662337 + AluSg SINE Alu 1 299 -11 285 193 294 0 chr13 24211067 24211176 -77661993 - L1ME4a LINE L1 -2 6119 5979 2223 107 0 7 chr13 24211699 24211997 -77661172 - AluSx SINE Alu -16 296 1 2440 230 81 110 chr13 24212309 24212635 -77660534 - L1MC4 LINE L1 -17 8025 7691 738 186 17 8 chr13 24212635 24212753 -77660416 - FLAM_A SINE Alu -13 120 2 2440 230 81 110 chr13 24212753 24214076 -77659093 - L1MC4 LINE L1 -351 7691 6315 2295 101 0 10 chr13 24214076 24214374 -77658795 + AluSx SINE Alu 1 295 -17 2440 230 81 110 chr13 24214374 24214567 -77658602 - L1MC4 LINE L1 -1727 6315 6118 195 42 0 0 chr13 24214633 24214657 -77658512 + (T)n Simple_repeat Simple_repeat 1 24 0 835 200 50 50 chr13 24214768 24214948 -77658221 + AluJo SINE Alu 121 300 -12 337 286 98 47 chr13 24215177 24215411 -77657758 + L1MC4a LINE L1 6413 6658 -1150 1775 169 0 3 chr13 24215521 24215805 -77657364 - AluJb SINE Alu -29 283 1 1935 131 3 11 chr13 24216328 24216651 -77656518 + AluSg SINE Alu 1 321 0 309 109 0 0 chr13 24216663 24216718 -77656451 + (TG)n Simple_repeat Simple_repeat 2 56 0 754 124 0 18 chr13 24216733 24216846 -77656323 + AluSg/x SINE Alu 199 309 -3 255 93 0 0 chr13 24216869 24216912 -77656257 + (TG)n Simple_repeat Simple_repeat 2 44 0 1372 195 152 14 chr13 24216912 24217321 -77655848 - MLT1C LTR MaLR -3 464 1 415 213 0 0 chr13 24217342 24217417 -77655752 + MER82 DNA MER2_type 2 76 -577 1217 129 0 0 chr13 24217485 24217648 -77655521 + FRAM SINE Alu 1 162 -14 378 288 105 21 chr13 24217681 24217872 -77655297 - MIR SINE MIR -48 214 8 1055 225 5 10 chr13 24217906 24218115 -77655054 + MER82 DNA MER2_type 444 651 -2 1884 165 0 3 chr13 24218262 24218559 -77654610 + AluJo SINE Alu 1 296 -16 26 64 0 0 chr13 24219311 24219358 -77653811 + AT_rich Low_complexity Low_complexity 1 47 0 248 209 29 180 chr13 24219363 24219502 -77653667 - HAL1 LINE L1 -22 2485 2368 538 229 42 0 chr13 24219540 24219684 -77653485 - HAL1 LINE L1 -133 2374 2225 1070 254 158 40 chr13 24219917 24220649 -77652520 - HAL1 LINE L1 -613 1894 845 1527 168 0 96 chr13 24220649 24220982 -77652187 - AluJb SINE Alu -11 301 1 1070 254 158 40 chr13 24220982 24221206 -77651963 - HAL1 LINE L1 -1662 845 649 457 312 64 28 chr13 24221232 24221605 -77651564 - HAL1 LINE L1 -1932 575 156 2223 107 0 10 chr13 24221715 24222014 -77651155 + AluSq SINE Alu 1 296 -17 2392 86 3 0 chr13 24222177 24222479 -77650690 + AluSp SINE Alu 1 303 -10 254 223 115 57 chr13 24222492 24222623 -77650546 - L1ME4a LINE L1 -71 6050 5907 2044 127 0 10 chr13 24222623 24222922 -77650247 - AluSx SINE Alu -16 296 1 254 223 115 57 chr13 24222922 24222947 -77650222 - L1ME4a LINE L1 -214 5907 5885 2141 114 26 26 chr13 24223205 24223546 -77649623 + L1MA5 LINE L1 5959 6299 -1 1832 157 10 16 chr13 24224143 24224456 -77648713 - AluJo SINE Alu -1 311 1 1789 131 65 3 chr13 24225442 24225732 -77647437 - AluSc SINE Alu -1 308 1 1278 106 0 6 chr13 24226910 24227080 -77646089 - AluSc SINE Alu -8 301 133 2135 124 7 0 chr13 24227512 24227811 -77645358 - AluSx SINE Alu -11 301 1 401 194 107 10 chr13 24228032 24228135 -77645034 - MER5B DNA MER1_type -6 172 60 196 327 0 0 chr13 24228217 24228272 -77644897 - MER5A DNA MER1_type -83 106 52 1873 204 135 59 chr13 24229764 24230343 -77642826 - MLT1E3 LTR MaLR -1 623 1 22 0 0 0 chr13 24230453 24230475 -77642694 + AT_rich Low_complexity Low_complexity 1 22 0 2412 70 3 10 chr13 24231283 24231584 -77641585 + AluY SINE Alu 1 299 -12 258 266 46 87 chr13 24231897 24232070 -77641099 + MLT1K LTR MaLR 278 443 -145 2051 118 27 7 chr13 24232394 24232690 -77640479 - AluSx SINE Alu -6 306 5 2295 117 3 0 chr13 24232717 24233024 -77640145 - AluSp SINE Alu -5 308 1 2387 90 0 0 chr13 24233433 24233732 -77639437 - AluSx SINE Alu -13 299 1 1751 137 23 50 chr13 24234317 24234616 -77638553 + AluJb SINE Alu 1 291 -21 343 245 0 101 chr13 24234635 24234794 -77638375 - L1MC4 LINE L1 -63 7979 7837 24 0 0 0 chr13 24235946 24235970 -77637199 + AT_rich Low_complexity Low_complexity 1 24 0 613 189 47 0 chr13 24236072 24236178 -77636991 + FLAM_C SINE Alu 15 125 -18 213 39 0 0 chr13 24236390 24236416 -77636753 + (T)n Simple_repeat Simple_repeat 1 26 0 216 381 36 0 chr13 24236529 24236613 -77636556 - L2 LINE L2 -86 3186 3100 2292 100 6 6 chr13 24236661 24236972 -77636197 + AluSx SINE Alu 1 311 -1 2263 107 0 7 chr13 24237141 24237439 -77635730 - AluSg1 SINE Alu -13 296 1 1865 164 11 0 chr13 24237445 24237732 -77635437 - AluJo SINE Alu -22 290 1 17814 131 95 12 chr13 24237762 24239952 -77633217 + L1MA2 LINE L1 15 2023 -5542 2069 121 0 0 chr13 24239952 24240232 -77632937 + AluSq SINE Alu 1 280 -33 215 61 30 0 chr13 24240232 24240265 -77632904 + (CA)n Simple_repeat Simple_repeat 1 34 0 17814 131 95 12 chr13 24240265 24240860 -77632309 + L1MA2 LINE L1 2023 2567 -4998 2019 135 14 7 chr13 24240860 24241156 -77632013 + AluSp SINE Alu 1 298 -15 17814 131 95 12 chr13 24241156 24241358 -77631811 + L1MA2 LINE L1 2567 3251 -4314 14762 161 15 36 chr13 24241352 24241639 -77631530 + L1MA2 LINE L1 3462 3753 -3971 * 2517 81 7 0 chr13 24241639 24241948 -77631221 + AluY SINE Alu 1 311 0 14762 161 15 36 chr13 24241948 24242146 -77631023 + L1MA2 LINE L1 3753 3954 -3770 931 136 0 0 chr13 24242146 24242278 -77630891 + FLAM_C SINE Alu 1 132 -1 14762 161 15 36 chr13 24242278 24245409 -77627760 + L1MA2 LINE L1 3954 6998 -726 3227 98 64 2 chr13 24245411 24245943 -77627226 + L1MA2 LINE L1 7159 7723 0 461 249 114 72 chr13 24245971 24246304 -77626865 - L1MC4 LINE L1 -75 7967 7621 934 170 114 55 chr13 24246320 24246681 -77626488 - MSTC LTR MaLR -3 425 1 272 226 36 12 chr13 24246702 24246786 -77626383 - L1MC4 LINE L1 -465 7577 7492 1916 176 83 8 chr13 24246842 24247119 -77626050 - MSTA LTR MaLR 0 428 111 2470 78 3 7 chr13 24247119 24247426 -77625743 + AluSp SINE Alu 1 306 -7 1916 176 83 8 chr13 24247426 24247546 -77625623 - MSTA LTR MaLR -317 111 1 309 304 222 24 chr13 24247575 24247679 -77625490 - L1MC4 LINE L1 -547 7495 7413 3386 157 70 11 chr13 24247679 24248303 -77624866 + MER67B LTR ERV1 1 661 0 309 304 222 24 chr13 24248303 24248405 -77624764 - L1MC4 LINE L1 -629 7413 7248 1079 252 77 49 chr13 24248410 24248913 -77624256 + MLT1F1 LTR MaLR 6 527 -40 1746 168 42 3 chr13 24249040 24249325 -77623844 + AluJo SINE Alu 1 296 -16 2297 103 0 10 chr13 24249330 24249631 -77623538 + AluSg SINE Alu 5 302 -8 255 177 165 76 chr13 24249645 24249724 -77623445 - MER5A DNA MER1_type -95 94 9 498 182 15 45 chr13 24250198 24250330 -77622839 + L1ME3A LINE L1 6028 6155 -15 1074 176 0 0 chr13 24250332 24250497 -77622672 - AluJb SINE Alu -13 299 135 22 0 0 0 chr13 24250521 24250543 -77622626 + AT_rich Low_complexity Low_complexity 1 22 0 570 172 0 0 chr13 24250548 24250641 -77622528 + FLAM_A SINE Alu 42 134 -8 1815 88 69 47 chr13 24250645 24250943 -77622226 + AluY SINE Alu 1 304 0 2109 130 25 91 chr13 24251106 24251177 -77621992 - MSTC LTR MaLR 0 428 354 2054 114 24 3 chr13 24251177 24251474 -77621695 + AluSx SINE Alu 1 303 -9 2109 130 25 91 chr13 24251474 24251853 -77621316 - MSTC LTR MaLR -74 354 1 1439 176 34 81 chr13 24252932 24253324 -77619845 - L1ME2 LINE L1 -12 6152 5784 1996 129 40 64 chr13 24253324 24253697 -77619472 + THE1B LTR MaLR 1 364 0 1439 176 34 81 chr13 24253697 24253776 -77619393 - L1ME2 LINE L1 -380 5784 5703 270 210 0 16 chr13 24253947 24254009 -77619160 + MER41B LTR ERV1 274 334 -301 2159 116 3 0 chr13 24254100 24254393 -77618776 - AluSx SINE Alu -18 294 1 984 265 57 0 chr13 24254620 24254899 -77618270 - L1ME2 LINE L1 -452 5712 5418 890 219 42 50 chr13 24254910 24255098 -77618071 - L1ME2 LINE L1 -904 5242 5057 2507 87 0 0 chr13 24255098 24255409 -77617760 - AluY SINE Alu 0 311 1 890 219 42 50 chr13 24255409 24255599 -77617570 - L1ME2 LINE L1 -1089 5057 4867 637 188 86 0 chr13 24255611 24255739 -77617430 - MER3 DNA MER1_type -68 141 3 855 138 209 9 chr13 24255854 24256064 -77617105 + L1MB3 LINE L1 5920 6171 -12 1421 201 46 26 chr13 24256100 24256404 -77616765 + AluJo SINE Alu 2 311 -1 2892 76 19 0 chr13 24256775 24257145 -77616024 - MER51B LTR ERV1 0 377 1 685 79 0 20 chr13 24257888 24257989 -77615180 + AluJ/FLAM SINE Alu 1 99 -213 213 39 0 0 chr13 24259430 24259456 -77613713 + (CAG)n Simple_repeat Simple_repeat 1 26 0 231 36 0 0 chr13 24261167 24261195 -77611974 + (A)n Simple_repeat Simple_repeat 1 28 0 283 266 125 0 chr13 24262858 24262922 -77610247 - MIR SINE MIR -102 106 35 2539 58 0 10 chr13 24263514 24263824 -77609345 + AluSc SINE Alu 3 309 0 913 104 0 0 chr13 24264971 24265086 -77608083 - AluSg SINE Alu -195 115 1 1001 234 137 15 chr13 24265363 24265700 -77607469 - MLT1J LTR MaLR -133 378 1 395 341 72 47 chr13 24266036 24266397 -77606772 - L2 LINE L2 -401 2913 2544 401 293 106 35 chr13 24266724 24266922 -77606247 - MLT1J LTR MaLR -249 262 51 21 36 0 0 chr13 24266928 24266956 -77606213 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 24267844 24267865 -77605304 + AT_rich Low_complexity Low_complexity 1 21 0 610 129 0 20 chr13 24267969 24268070 -77605099 - AluJb SINE Alu -9 303 205 212 398 11 11 chr13 24268091 24268179 -77604990 - MIR SINE MIR -87 121 34 997 122 0 0 chr13 24268267 24268398 -77604771 - AluJb SINE Alu -179 133 3 201 187 0 53 chr13 24268627 24268702 -77604467 + T-rich Low_complexity Low_complexity 2 72 0 38 0 0 0 chr13 24268742 24268780 -77604389 + AT_rich Low_complexity Low_complexity 1 38 0 1871 112 4 4 chr13 24269190 24269450 -77603719 + AluSx SINE Alu 39 298 -14 1673 155 24 34 chr13 24269831 24270122 -77603047 + AluJo SINE Alu 1 288 -24 249 83 0 0 chr13 24270122 24270158 -77603011 + (TA)n Simple_repeat Simple_repeat 2 37 0 2067 170 57 48 chr13 24270702 24270995 -77602174 - L1MD2 LINE L1 -23 6336 6047 2489 80 3 3 chr13 24270995 24271306 -77601863 - AluSp SINE Alu -2 311 1 2067 170 57 48 chr13 24271306 24271415 -77601754 - L1MD2 LINE L1 -312 6047 5941 1707 162 42 21 chr13 24271415 24271699 -77601470 + AluJo SINE Alu 5 294 -18 2067 170 57 48 chr13 24271699 24271800 -77601369 - L1MD2 LINE L1 -418 5941 5827 1322 245 30 53 chr13 24271807 24272276 -77600893 + L1M4 LINE L1 15 472 -6070 3892 156 23 76 chr13 24272290 24272653 -77600516 + L1MB7 LINE L1 5137 5518 -666 492 196 0 28 chr13 24272653 24272760 -77600409 + U13 snRNA snRNA 1 104 0 3892 156 23 76 chr13 24272760 24273510 -77599659 + L1MB7 LINE L1 5518 6184 0 673 108 14 72 chr13 24273512 24273651 -77599518 - L1MD1 LINE L1 -414 5828 5698 2000 98 0 29 chr13 24273669 24273944 -77599225 - AluSx SINE Alu -45 267 1 353 237 154 58 chr13 24274274 24274430 -77598739 + L2 LINE L2 3143 3313 0 2213 104 0 0 chr13 24275204 24275491 -77597678 + AluSg1 SINE Alu 1 287 -22 796 169 0 0 chr13 24275800 24275918 -77597251 + FLAM_A SINE Alu 4 121 -12 6713 109 28 19 chr13 24276363 24277424 -77595745 + MER11C LTR ERVK 1 1071 0 22 35 0 0 chr13 24277469 24277498 -77595671 + AT_rich Low_complexity Low_complexity 1 29 0 1699 202 0 0 chr13 24277924 24278221 -77594948 + AluJo SINE Alu 1 297 -15 2289 103 3 0 chr13 24278362 24278664 -77594505 - AluSp SINE Alu -10 303 1 2476 207 60 78 chr13 24279281 24279571 -77593598 + L1M4 LINE L1 1130 1423 -5221 1043 187 6 0 chr13 24279571 24279737 -77593432 + FAM SINE Alu 1 167 -8 2476 207 60 78 chr13 24279737 24280111 -77593058 + L1M4 LINE L1 1423 1802 -4842 2465 71 0 7 chr13 24280111 24280419 -77592750 + AluY SINE Alu 2 307 -4 2476 207 60 78 chr13 24280419 24280579 -77592590 + L1M4 LINE L1 1802 1963 -4681 1498 200 0 23 chr13 24280579 24280879 -77592290 - AluJo SINE Alu -19 293 1 2476 207 60 78 chr13 24280879 24281209 -77591960 + L1M4 LINE L1 1963 2266 -4378 2113 116 3 7 chr13 24281209 24281501 -77591668 + AluSq SINE Alu 1 291 -22 2325 88 0 10 chr13 24282158 24282486 -77590683 + AluSg SINE Alu 5 310 0 2908 244 55 35 chr13 24282496 24283215 -77589954 + L1M4 LINE L1 2877 3580 -3064 1690 151 45 20 chr13 24283215 24283507 -77589662 + AluJo SINE Alu 1 299 -13 2908 244 55 35 chr13 24283507 24283592 -77589577 + L1M4 LINE L1 3580 3662 -2982 2563 71 0 0 chr13 24283592 24283903 -77589266 - AluY SINE Alu 0 311 1 2908 244 55 35 chr13 24283903 24284485 -77588684 + L1M4 LINE L1 3662 4292 -2352 1480 191 60 12 chr13 24284494 24284830 -77588339 - MLT1A1 LTR MaLR -12 353 2 593 189 61 0 chr13 24284832 24284980 -77588189 + L1M4 LINE L1 4290 4446 -2198 2393 109 0 0 chr13 24285004 24285316 -77587853 + AluSx SINE Alu 1 312 0 1825 110 0 0 chr13 24285360 24285606 -77587563 - AluSg SINE Alu -64 246 1 1772 167 0 7 chr13 24285627 24285914 -77587255 - AluJo SINE Alu -14 298 14 2487 224 62 46 chr13 24285928 24287273 -77585896 + L1MB5 LINE L1 1966 3337 -3045 3118 152 21 36 chr13 24287287 24288284 -77584885 + L1MB5 LINE L1 5125 6102 -308 293 175 0 0 chr13 24288277 24288340 -77584829 + L1MB5 LINE L1 6340 6402 -8 * 521 172 10 0 chr13 24288361 24288460 -77584709 - LTR47A LTR ERVL -2 450 351 285 29 0 0 chr13 24288461 24288495 -77584674 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 238 135 0 0 chr13 24288495 24288522 -77584647 + (TTCTCC)n Simple_repeat Simple_repeat 6 35 -7 2300 110 0 0 chr13 24288522 24288831 -77584338 - AluSc SINE Alu 0 309 1 238 135 0 0 chr13 24288831 24288840 -77584329 + (TTCTCC)n Simple_repeat Simple_repeat 34 42 0 356 207 0 11 chr13 24288852 24288939 -77584230 + CT-rich Low_complexity Low_complexity 4 89 0 1588 192 16 19 chr13 24288946 24289253 -77583916 - AluJo SINE Alu -5 307 2 1363 185 119 3 chr13 24289253 24289572 -77583597 - LTR47A LTR ERVL -96 356 1 7514 191 59 37 chr13 24289574 24291791 -77581378 - MER21-int LTR ERV1 -632 6009 3841 2283 93 3 3 chr13 24291791 24292092 -77581077 - AluSg SINE Alu -7 303 3 7514 191 59 37 chr13 24292092 24292315 -77580854 - MER21-int LTR ERV1 -2800 3841 3624 3526 48 0 70 chr13 24292315 24292797 -77580372 - LTR7 LTR ERV1 -2 448 1 7514 191 59 37 chr13 24292797 24293473 -77579696 - MER21-int LTR ERV1 -3017 3624 552 629 178 15 86 chr13 24293473 24293670 -77579499 + MER4A LTR ERV1 3 185 -479 1378 168 20 72 chr13 24293728 24294135 -77579034 + MER83B-int LTR ERV1 355 2538 -4880 * 1551 237 67 94 chr13 24294132 24294598 -77578571 + MER83B-int LTR ERV1 768 1245 -4901 182 62 31 0 chr13 24294598 24294630 -77578539 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1551 237 67 94 chr13 24294630 24294692 -77578477 + MER83B-int LTR ERV1 1245 1307 -4839 378 0 0 0 chr13 24294692 24294734 -77578435 + (CA)n Simple_repeat Simple_repeat 2 43 0 1551 237 67 94 chr13 24294734 24295613 -77577556 + MER83B-int LTR ERV1 1307 2634 -3512 325 243 32 57 chr13 24295650 24295857 -77577312 + MER34C LTR ERV1 155 402 -183 1404 154 36 128 chr13 24295867 24296384 -77576785 + MER83B-int LTR ERV1 1833 3729 -3808 680 182 86 61 chr13 24296404 24296602 -77576567 + MER83B-int LTR ERV1 2719 2921 -1959 6692 139 18 68 chr13 24296605 24296719 -77576450 + MER83B-int LTR ERV1 4239 4357 -3763 2334 96 7 0 chr13 24296719 24297021 -77576148 + AluSp SINE Alu 1 304 -9 6692 139 18 68 chr13 24297021 24297264 -77575905 + MER83B-int LTR ERV1 4357 4611 -3509 2421 91 0 7 chr13 24297264 24297572 -77575597 - AluSg SINE Alu -4 306 1 6692 139 18 68 chr13 24297572 24298034 -77575135 + MER83B-int LTR ERV1 4611 4971 -3149 1838 173 17 0 chr13 24298034 24298335 -77574834 + AluSx SINE Alu 1 306 -6 6692 139 18 68 chr13 24298335 24298821 -77574348 + MER83B-int LTR ERV1 4971 5480 -2640 917 169 33 11 chr13 24298855 24299038 -77574131 + MER4C LTR ERV1 279 465 0 1663 165 45 37 chr13 24299038 24299429 -77573740 - MER83B-int LTR ERV1 -1977 2903 2790 1091 181 0 11 chr13 24299442 24299624 -77573545 - AluJb SINE Alu 0 312 133 701 121 71 37 chr13 24299624 24299805 -77573364 - MER83B-int LTR ERV1 -2777 3554 2779 752 203 96 137 chr13 24300085 24300585 -77572584 + LTR8 LTR ERV1 246 691 0 326 167 0 0 chr13 24300585 24300645 -77572524 - MER83B-int LTR ERV1 -3901 3636 3577 1223 150 169 52 chr13 24300648 24301170 -77571999 - LTR29 LTR ERV1 -6 616 1 604 179 79 62 chr13 24301178 24301394 -77571775 - MER83B-int LTR ERV1 -4012 2746 1956 271 179 0 18 chr13 24301422 24301478 -77571691 - MER83B-int LTR ERV1 -3888 1235 1181 551 151 0 5 chr13 24301504 24301600 -77571569 - MER83B-int LTR ERV1 -3220 2726 2646 1476 248 43 43 chr13 24301601 24302024 -77571145 - MER83B-int LTR ERV1 -4058 2273 1851 344 210 51 65 chr13 24301999 24302137 -77571032 - MER83B-int LTR ERV1 -2594 2286 2151 * 527 190 133 62 chr13 24302227 24302434 -77570735 + MER61E LTR ERV1 1 223 -484 328 141 141 0 chr13 24302427 24302491 -77570678 + MER51A LTR ERV1 208 280 -354 * 1351 166 36 23 chr13 24302461 24302762 -77570407 + LTR25 LTR ERV1 480 784 -10 2679 181 4 9 chr13 24303059 24303513 -77569656 - LTR47A LTR ERVL 0 452 1 597 232 6 65 chr13 24303544 24303712 -77569457 + L1MC/D LINE L1 3952 4109 -2037 520 195 0 0 chr13 24303716 24303798 -77569371 - AluJ SINE Alu -18 294 213 1090 209 20 62 chr13 24303798 24304090 -77569079 - LTR4 LTR ERV1 0 596 317 698 247 52 108 chr13 24304176 24304545 -77568624 - LTR4 LTR ERV1 -239 357 10 705 156 0 70 chr13 24304555 24304683 -77568486 - AluJo SINE Alu -92 220 102 3964 214 61 32 chr13 24304684 24304928 -77568241 + L1MC/D LINE L1 4112 4348 -2011 3336 125 34 43 chr13 24304928 24305434 -77567735 - LTR26B LTR ERV1 0 531 29 2327 95 0 0 chr13 24305434 24305729 -77567440 + AluSg SINE Alu 1 295 -15 3336 125 34 43 chr13 24305729 24305758 -77567411 - LTR26B LTR ERV1 -502 29 1 3964 214 61 32 chr13 24305758 24306689 -77566480 + L1MC/D LINE L1 4348 5251 -1108 2465 139 15 105 chr13 24306689 24307164 -77566005 - MER61C LTR ERV1 0 434 3 3964 214 61 32 chr13 24307164 24307540 -77565629 + L1MC/D LINE L1 5251 5703 -656 1746 135 79 0 chr13 24307540 24307806 -77565363 - AluSx SINE Alu -25 287 1 3964 214 61 32 chr13 24307806 24307867 -77565302 + L1MC/D LINE L1 5703 5761 -598 2296 101 0 3 chr13 24308279 24308576 -77564593 + AluSq SINE Alu 1 296 -17 27 29 0 0 chr13 24308606 24308640 -77564529 + AT_rich Low_complexity Low_complexity 1 34 0 220 146 57 32 chr13 24308677 24308800 -77564369 + (TTATA)n Simple_repeat Simple_repeat 5 130 0 2392 93 0 0 chr13 24309685 24309987 -77563182 + AluSq SINE Alu 1 302 -11 494 204 254 7 chr13 24310281 24310423 -77562746 - MER5A DNA MER1_type 0 189 13 26 50 0 0 chr13 24310705 24310745 -77562424 + AT_rich Low_complexity Low_complexity 1 40 0 2858 145 9 2 chr13 24311127 24311548 -77561621 + MSTB LTR MaLR 1 424 -2 281 322 87 0 chr13 24312283 24312398 -77560771 - MIR SINE MIR -13 249 125 28 48 0 0 chr13 24312431 24312473 -77560696 + AT_rich Low_complexity Low_complexity 1 42 0 2921 221 46 68 chr13 24312511 24313693 -77559476 - L1ME2 LINE L1 -10 6154 5008 3208 138 35 57 chr13 24313699 24313983 -77559186 - MER21A LTR ERV1 -2 929 661 2022 110 3 30 chr13 24313983 24314284 -77558885 - AluSx SINE Alu -19 293 1 3208 138 35 57 chr13 24314284 24314565 -77558604 - MER21A LTR ERV1 -270 661 376 1668 140 11 15 chr13 24314570 24314835 -77558334 - MER21A LTR ERV1 -667 264 1 1885 214 20 63 chr13 24314911 24315416 -77557753 - MER92C LTR ERV1 -15 539 57 618 323 46 39 chr13 24315584 24315664 -77557505 - MER92C-int LTR ERV1 -177 6624 6546 2866 115 4 80 chr13 24315664 24316125 -77557044 - MSTB LTR MaLR 0 426 1 618 323 46 39 chr13 24316125 24316475 -77556694 - MER92C-int LTR ERV1 -255 6546 6191 1367 197 61 0 chr13 24317409 24317688 -77555481 - MER89-int LTR ERV1 -3903 1033 738 2273 80 0 42 chr13 24317914 24318226 -77554943 + AluSq SINE Alu 1 299 -14 443 277 66 59 chr13 24318379 24318805 -77554364 - MER89-int LTR ERV1 -3069 3732 3304 189 0 0 0 chr13 24319206 24319227 -77553942 + (A)n Simple_repeat Simple_repeat 1 21 0 578 193 67 0 chr13 24319227 24319346 -77553823 + L1MC2 LINE L1 6181 6307 -37 240 258 157 0 chr13 24319576 24319665 -77553504 - MIR SINE MIR -51 211 109 213 39 0 0 chr13 24321176 24321202 -77551967 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2445 81 10 0 chr13 24322776 24323085 -77550084 + AluSx SINE Alu 1 312 0 1289 157 15 114 chr13 24323783 24324107 -77549062 + AluJo SINE Alu 2 293 -19 1869 145 103 16 chr13 24325241 24325551 -77547618 + MER1B DNA MER1_type 1 337 0 1144 188 99 50 chr13 24326115 24326145 -77547024 - AluJo SINE Alu -16 296 269 2658 81 27 48 chr13 24326145 24326298 -77546871 - THE1B LTR MaLR 0 364 209 2009 127 13 10 chr13 24326298 24326598 -77546571 + AluSx SINE Alu 1 301 -11 2658 81 27 48 chr13 24326598 24326816 -77546353 - THE1B LTR MaLR -155 209 1 1144 188 99 50 chr13 24326816 24327067 -77546102 - AluJo SINE Alu -43 269 1 1620 125 0 0 chr13 24327070 24327302 -77545867 - AluSg/x SINE Alu 0 312 81 669 128 0 0 chr13 24327359 24327453 -77545716 - AluJ/FLAM SINE Alu -216 96 3 2310 106 7 0 chr13 24327804 24328106 -77545063 + AluSg SINE Alu 1 304 -6 918 264 75 17 chr13 24328157 24328449 -77544720 + MLT1J LTR MaLR 71 379 -132 308 96 0 58 chr13 24328512 24328564 -77544605 + FLAM_A SINE Alu 85 133 0 1202 115 6 23 chr13 24328565 24328739 -77544430 + AluSx SINE Alu 1 171 -141 2000 112 7 0 chr13 24328816 24329094 -77544075 - AluSq SINE Alu -22 291 12 1003 134 24 18 chr13 24329281 24329445 -77543724 + AluJo SINE Alu 1 165 -147 263 273 118 18 chr13 24329456 24329566 -77543603 + L2 LINE L2 3193 3313 0 29 28 0 0 chr13 24330229 24330265 -77542904 + AT_rich Low_complexity Low_complexity 1 36 0 1403 191 68 25 chr13 24330265 24330543 -77542626 - AluJo SINE Alu -22 290 1 2235 131 10 0 chr13 24330559 24330865 -77542304 - 7SLRNA srpRNA srpRNA -11 309 1 2342 86 0 0 chr13 24331080 24331372 -77541797 + AluSg SINE Alu 1 292 -18 1769 119 20 0 chr13 24332037 24332288 -77540881 + AluSx SINE Alu 1 256 -56 2180 103 0 39 chr13 24332310 24332621 -77540548 - AluSg SINE Alu -11 299 1 941 219 35 62 chr13 24332698 24332958 -77540211 + L1MD3 LINE L1 4698 4950 -1196 2193 116 13 3 chr13 24332964 24333274 -77539895 + AluSq SINE Alu 1 313 0 2279 117 0 7 chr13 24333284 24333592 -77539577 + AluSx SINE Alu 1 306 -6 1714 163 29 80 chr13 24333621 24334071 -77539098 + L1MD3 LINE L1 5332 5803 -377 1935 127 0 17 chr13 24334071 24334363 -77538806 + AluSx SINE Alu 25 311 -1 1714 163 29 80 chr13 24334363 24334467 -77538702 + L1MD3 LINE L1 5803 5911 -269 2695 146 36 5 chr13 24334467 24334905 -77538264 + LTR47A LTR ERVL 1 452 0 1714 163 29 80 chr13 24334905 24335240 -77537929 + L1MD3 LINE L1 5911 6152 -28 692 180 0 9 chr13 24335252 24335363 -77537806 + FLAM_A SINE Alu 23 132 -10 318 23 0 0 chr13 24335385 24335429 -77537740 + L1MB4 LINE L1 6136 6179 -1 1778 153 7 17 chr13 24335537 24335838 -77537331 - AluJb SINE Alu -14 298 1 668 332 94 17 chr13 24335987 24336562 -77536607 + L2 LINE L2 2021 2639 -675 1348 180 30 67 chr13 24336618 24336796 -77536373 + Charlie4a DNA MER1_type 19 181 -1780 1909 132 7 30 chr13 24336796 24337099 -77536070 + AluSx SINE Alu 3 298 -14 1348 180 30 67 chr13 24337099 24337248 -77535921 + Charlie4a DNA MER1_type 181 334 -174 353 75 0 0 chr13 24337244 24337297 -77535872 - AluSp/q SINE Alu 0 303 251 * 370 167 0 15 chr13 24337292 24337358 -77535811 + AluSp/q SINE Alu 229 293 -10 233 294 84 64 chr13 24337402 24337759 -77535410 - L1MCa LINE L1 -1347 5079 4716 2168 103 14 0 chr13 24337781 24338071 -77535098 + AluSg SINE Alu 1 294 -16 182 147 118 0 chr13 24338072 24338106 -77535063 + L2 LINE L2 3201 3238 -75 1622 233 44 50 chr13 24338106 24338625 -77534544 + MER74B LTR ERVL 72 587 -35 1054 281 47 0 chr13 24338651 24338992 -77534177 + L1MC4a LINE L1 5543 5899 -1909 498 270 95 21 chr13 24339001 24339190 -77533979 + MIR SINE MIR 9 211 -51 767 115 0 0 chr13 24339329 24339425 -77533744 - AluSg/x SINE Alu -150 160 65 3005 246 63 12 chr13 24339543 24340506 -77532663 - L1MCa LINE L1 -2592 3834 2823 648 144 245 43 chr13 24340498 24340568 -77532601 - L1MCa LINE L1 -4120 2306 2251 * 2560 47 3 0 chr13 24340568 24340868 -77532301 - AluY SINE Alu -10 301 1 2114 102 14 3 chr13 24340868 24341162 -77532007 - AluSq SINE Alu -16 297 1 648 144 245 43 chr13 24341162 24341377 -77531792 - L1MCa LINE L1 -4174 2252 1933 520 264 0 0 chr13 24341381 24341491 -77531678 + FLAM_A SINE Alu 1 110 -32 951 106 0 0 chr13 24341493 24341616 -77531553 + AluSg/x SINE Alu 163 285 -25 252 0 0 0 chr13 24341616 24341644 -77531525 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2455 74 15 21 chr13 24341646 24341983 -77531186 + L1PB2 LINE L1 5816 6150 -1 1116 137 24 19 chr13 24341993 24342063 -77531106 - L1MCa LINE L1 -4502 1924 1856 2437 86 3 0 chr13 24342063 24342366 -77530803 - AluSg SINE Alu -6 304 1 1116 137 24 19 chr13 24342366 24342463 -77530706 - L1MCa LINE L1 -4570 1856 1753 1535 162 92 4 chr13 24342463 24342734 -77530435 - AluJb SINE Alu -17 295 1 1116 137 24 19 chr13 24342734 24342770 -77530399 - L1MCa LINE L1 -4673 1753 1719 2656 73 0 12 chr13 24342770 24343112 -77530057 - MER4C LTR ERV1 0 465 128 704 89 40 0 chr13 24343112 24343213 -77529956 - AluSc SINE Alu -3 306 202 643 186 0 9 chr13 24343220 24343333 -77529836 - MER4D LTR ERV1 -238 665 554 2542 43 0 13 chr13 24343344 24343645 -77529524 + AluY SINE Alu 1 297 -14 1972 132 103 97 chr13 24343907 24344238 -77528931 + MSTA LTR MaLR 1 328 -100 2285 112 0 6 chr13 24344238 24344551 -77528618 - AluSq SINE Alu -2 311 1 1972 132 103 97 chr13 24344551 24344604 -77528565 + MSTA LTR MaLR 328 391 -37 2195 125 3 0 chr13 24344604 24344900 -77528269 - AluSq SINE Alu -16 297 1 1972 132 103 97 chr13 24344900 24344939 -77528230 + MSTA LTR MaLR 391 428 0 2147 215 103 65 chr13 24345310 24345839 -77527330 + MER50 LTR ERV1 10 517 -217 7968 130 16 24 chr13 24345839 24345959 -77527210 - L1PA11 LINE L1 0 6174 6055 2347 99 0 0 chr13 24345959 24346262 -77526907 - AluSc SINE Alu -6 303 1 7968 130 16 24 chr13 24346262 24346991 -77526178 - L1PA11 LINE L1 -119 6055 5322 2403 79 3 0 chr13 24346991 24347282 -77525887 - AluY SINE Alu -19 292 1 2424 103 3 0 chr13 24347292 24347603 -77525566 - AluSx SINE Alu 0 312 1 7968 130 16 24 chr13 24347603 24348869 -77524300 - L1PA11 LINE L1 -861 5313 4052 2147 215 103 65 chr13 24348869 24349037 -77524132 + MER50 LTR ERV1 517 734 0 1037 147 0 71 chr13 24349786 24349829 -77523340 - AluSx SINE Alu 0 310 266 180 0 0 0 chr13 24349829 24349849 -77523320 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1037 147 0 71 chr13 24349849 24350003 -77523166 - AluSx SINE Alu -44 266 127 305 221 130 0 chr13 24350011 24350088 -77523081 - L1MC4 LINE L1 -1339 6703 6617 2431 70 0 17 chr13 24350088 24350389 -77522780 - AluY SINE Alu -15 296 1 919 118 0 15 chr13 24350390 24350525 -77522644 - AluSx SINE Alu -179 133 1 2511 124 8 0 chr13 24350537 24350908 -77522261 - MER41D LTR ERV1 -183 374 1 1274 185 22 0 chr13 24350909 24351131 -77522038 + AluJo SINE Alu 56 282 -30 194 315 45 0 chr13 24351213 24351302 -77521867 - MIR SINE MIR -118 144 52 683 241 47 16 chr13 24351537 24351728 -77521441 - MIR SINE MIR -60 202 6 713 286 91 33 chr13 24351944 24352308 -77520861 + L1MC4a LINE L1 5464 5848 -1960 1629 161 21 0 chr13 24352386 24352665 -77520504 + MER49 LTR ERV1 1 285 -638 1193 189 6 8 chr13 24352715 24352975 -77520194 + LTR39 LTR ERV1 394 774 -129 466 158 0 0 chr13 24352979 24353055 -77520114 - AluS SINE Alu -229 84 9 343 288 25 34 chr13 24353065 24353183 -77519986 + MER4E LTR ERV1 641 757 -22 885 151 0 0 chr13 24353183 24353309 -77519860 + AluJo SINE Alu 1 126 -186 516 124 29 0 chr13 24353309 24353414 -77519755 + (TA)n Simple_repeat Simple_repeat 1 108 0 2161 120 3 0 chr13 24353432 24353724 -77519445 + AluSg SINE Alu 1 293 -17 401 261 21 63 chr13 24353736 24353878 -77519291 + AluJo SINE Alu 129 264 -48 1748 157 0 4 chr13 24354256 24354530 -77518639 - AluJb SINE Alu -37 275 3 237 204 68 80 chr13 24354677 24354765 -77518404 - MLT2B3 LTR ERVL 0 554 468 387 0 0 0 chr13 24354767 24354810 -77518359 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 1976 183 147 5 chr13 24354840 24355277 -77517892 - MLT2B3 LTR ERVL -55 499 1 2175 110 24 0 chr13 24355296 24355586 -77517583 + AluSg SINE Alu 1 297 -13 2195 127 0 10 chr13 24355709 24356016 -77517153 + AluSx SINE Alu 1 304 -8 266 233 100 33 chr13 24356050 24356140 -77517029 - LTR67 LTR ERVL -276 281 186 251 281 0 42 chr13 24356297 24356393 -77516776 - L1MC/D LINE L1 -1936 5872 5781 2048 112 3 43 chr13 24356497 24356820 -77516349 + AluSg SINE Alu 1 310 0 2218 105 24 0 chr13 24356980 24357275 -77515894 + AluSp SINE Alu 1 302 -11 2347 78 7 10 chr13 24357277 24357586 -77515583 + AluY SINE Alu 1 308 -3 6758 128 96 17 chr13 24358046 24359101 -77514068 + MER52C LTR ERV1 1 1162 -116 2162 128 0 0 chr13 24359101 24359407 -77513762 + AluSg SINE Alu 1 306 -4 6758 128 96 17 chr13 24359407 24359535 -77513634 + MER52C LTR ERV1 1162 1278 0 199 262 0 0 chr13 24359682 24359724 -77513445 + L3 LINE CR1 1453 1494 -83 2380 92 0 13 chr13 24359901 24360206 -77512963 + AluSx SINE Alu 2 302 -10 872 205 0 0 chr13 24360250 24360401 -77512768 - Tigger3(Golem) DNA MER2_type 0 3029 2879 283 208 113 0 chr13 24360402 24360455 -77512714 - Tigger3(Golem) DNA MER2_type -2969 60 2 1478 152 97 61 chr13 24360550 24360912 -77512257 + THE1C LTR MaLR 1 375 0 1481 187 0 53 chr13 24360915 24361011 -77512158 + AluJo SINE Alu 1 101 -211 2572 58 0 0 chr13 24361011 24361305 -77511864 + AluSg SINE Alu 1 294 -16 1481 187 0 53 chr13 24361305 24361492 -77511677 + AluJo SINE Alu 101 269 -43 399 296 50 69 chr13 24361559 24361819 -77511350 - L2 LINE L2 -78 3194 2940 279 0 0 0 chr13 24361882 24361913 -77511256 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1382 161 8 56 chr13 24361991 24362096 -77511073 + AluJb SINE Alu 42 151 -161 2336 108 0 0 chr13 24362096 24362392 -77510777 + AluSx SINE Alu 1 296 -16 1382 161 8 56 chr13 24362392 24362553 -77510616 + AluJb SINE Alu 151 295 -17 419 288 22 27 chr13 24362555 24362739 -77510430 - L2 LINE L2 -450 2864 2682 408 240 19 0 chr13 24362768 24362872 -77510297 - Charlie4 DNA MER1_type -16 1945 1840 3276 175 62 40 chr13 24362872 24362960 -77510209 + L1MB8 LINE L1 4360 4445 -1701 1877 159 3 19 chr13 24362960 24363268 -77509901 + AluJo SINE Alu 1 303 -9 3276 175 62 40 chr13 24363268 24363881 -77509288 + L1MB8 LINE L1 4445 5084 -1062 1362 205 37 34 chr13 24363881 24364179 -77508990 + AluJo SINE Alu 1 299 -13 3276 175 62 40 chr13 24364179 24364299 -77508870 + L1MB8 LINE L1 5084 5200 -946 1641 132 92 86 chr13 24364306 24364549 -77508620 - MLT1B LTR MaLR 0 390 143 1649 117 133 0 chr13 24364549 24364813 -77508356 - AluSg SINE Alu -9 301 3 1641 132 92 86 chr13 24364813 24364917 -77508252 - MLT1B LTR MaLR -247 143 41 1760 149 73 89 chr13 24364921 24365322 -77507847 + L1MB8 LINE L1 5745 6140 -38 2576 59 0 3 chr13 24365322 24365626 -77507543 - AluY SINE Alu -8 303 1 1760 149 73 89 chr13 24365626 24365660 -77507509 + L1MB8 LINE L1 6140 6173 -5 288 111 0 0 chr13 24365660 24365714 -77507455 - Charlie4 DNA MER1_type -97 1864 1811 231 91 0 0 chr13 24365720 24365753 -77507416 - Alu SINE Alu -10 291 259 507 127 13 0 chr13 24366114 24366193 -77506976 + L1MB3 LINE L1 6059 6138 -45 852 155 0 0 chr13 24366193 24366322 -77506847 + FLAM_C SINE Alu 1 129 -4 298 98 61 0 chr13 24366322 24366404 -77506765 + (TA)n Simple_repeat Simple_repeat 2 88 0 41 66 0 0 chr13 24366406 24366482 -77506687 + AT_rich Low_complexity Low_complexity 1 76 0 210 231 0 0 chr13 24366482 24366547 -77506622 + (TA)n Simple_repeat Simple_repeat 2 66 0 1645 158 7 58 chr13 24366686 24366996 -77506173 - AluJo SINE Alu -18 294 1 2190 100 3 3 chr13 24367271 24367587 -77505582 - AluSg SINE Alu 0 310 1 858 141 6 24 chr13 24367595 24367765 -77505404 - L1MA6 LINE L1 0 6300 6134 1278 128 27 14 chr13 24468635 24468854 -77404315 + AluSq SINE Alu 1 222 -91 1187 222 225 21 chr13 24468858 24469733 -77403436 - SATR1 Satellite Satellite -96 1053 1 960 219 193 27 chr13 24470916 24471325 -77401844 - SATR1 Satellite Satellite -2 476 1 1150 216 263 33 chr13 24471372 24472220 -77400949 - SATR1 Satellite Satellite -51 1042 1 1194 217 236 41 chr13 24472285 24473507 -77399662 - SATR1 Satellite Satellite -95 1460 1 1087 230 252 28 chr13 24473553 24474883 -77398286 - SATR1 Satellite Satellite -51 1627 1 1290 217 278 7 chr13 24474917 24477666 -77395503 - SATR1 Satellite Satellite -1 3494 1 1120 231 237 39 chr13 24477681 24479289 -77393880 - SATR1 Satellite Satellite -106 1926 1 2079 202 108 9 chr13 24479323 24480659 -77392510 - SATR1 Satellite Satellite -1 1468 1 248 216 5 88 chr13 24480746 24480940 -77392229 + (TTA)n Simple_repeat Simple_repeat 1 178 0 2307 181 105 21 chr13 24481037 24482737 -77390432 - SATR1 Satellite Satellite 0 1841 1 823 172 45 45 chr13 24482884 24483082 -77390087 + LTR2 LTR ERV1 235 432 -17 522 83 0 0 chr13 24483107 24483179 -77389990 - tRNA-Glu-GAG tRNA tRNA -2 73 2 3178 105 14 0 chr13 24483180 24483619 -77389550 + HERVE LTR ERV1 647 1091 -6722 375 210 36 51 chr13 24483620 24483758 -77389411 - L1M LINE L1 -772 5390 5255 1156 80 0 0 chr13 24483763 24483914 -77389255 + AluSp SINE Alu 1 151 -162 22 80 0 0 chr13 24484649 24484699 -77388470 + GC_rich Low_complexity Low_complexity 1 50 0 28 48 0 0 chr13 24484896 24484938 -77388231 + GC_rich Low_complexity Low_complexity 1 42 0 249 291 142 0 chr13 24485196 24485330 -77387839 + MIR SINE MIR 46 198 -64 198 135 0 54 chr13 24485723 24485760 -77387409 + MIR SINE MIR 117 151 -57 216 67 0 0 chr13 24486346 24486376 -77386793 + (CAA)n Simple_repeat Simple_repeat 1 30 0 324 48 0 0 chr13 24490645 24490687 -77382482 + (TG)n Simple_repeat Simple_repeat 1 42 0 506 261 118 6 chr13 24492639 24492800 -77380369 - MIR3 SINE MIR 0 208 30 218 206 0 16 chr13 24493242 24493305 -77379864 + (CA)n Simple_repeat Simple_repeat 2 63 0 608 176 6 0 chr13 24493316 24493486 -77379683 + (CA)n Simple_repeat Simple_repeat 1 171 0 2037 119 0 7 chr13 24493581 24493874 -77379295 - AluSx SINE Alu -21 291 1 222 37 0 0 chr13 24495921 24495948 -77377221 + (TC)n Simple_repeat Simple_repeat 1 27 0 2179 90 7 4 chr13 24496162 24496441 -77376728 + AluSx SINE Alu 1 280 -32 303 28 0 0 chr13 24496443 24496479 -77376690 + (TAA)n Simple_repeat Simple_repeat 2 37 0 342 0 0 0 chr13 24496479 24496517 -77376652 + (GAA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr13 24498076 24498097 -77375072 + AT_rich Low_complexity Low_complexity 1 21 0 3572 135 86 26 chr13 24498912 24499530 -77373639 - L1MB7 LINE L1 0 6184 5415 2425 66 7 3 chr13 24499530 24499832 -77373337 - AluY SINE Alu -8 303 1 3572 135 86 26 chr13 24499832 24499977 -77373192 - L1MB7 LINE L1 -769 5415 5280 * 7028 118 29 4 chr13 24499965 24501536 -77371633 - L1MA2 LINE L1 0 7723 6115 32535 106 15 51 chr13 24501540 24507917 -77365252 - L1PA7 LINE L1 -4 6150 12 5373 136 26 1 chr13 24507929 24508841 -77364328 - L1MA2 LINE L1 -1434 6131 5197 3858 70 6 6 chr13 24508841 24509340 -77363829 - L1PA7 LINE L1 0 6154 5656 5265 80 0 0 chr13 24509340 24510029 -77363140 + L1P LINE L1 3753 4441 -1705 * 20893 147 39 30 chr13 24510000 24510757 -77362412 - L1MA2 LINE L1 -2330 5235 4486 2455 76 0 3 chr13 24510757 24511060 -77362109 + AluSq SINE Alu 5 306 -7 20893 147 39 30 chr13 24511060 24511997 -77361172 - L1MA2 LINE L1 -3079 4486 3559 2180 123 0 10 chr13 24511997 24512298 -77360871 - AluSq SINE Alu -15 298 1 20893 147 39 30 chr13 24512298 24514127 -77359042 - L1MA2 LINE L1 -4006 3559 1649 198 0 0 0 chr13 24514127 24514149 -77359020 + (TC)n Simple_repeat Simple_repeat 2 23 0 20893 147 39 30 chr13 24514149 24515803 -77357366 - L1MA2 LINE L1 -5916 1649 11 1871 172 7 3 chr13 24515834 24516136 -77357033 - AluJo SINE Alu -9 303 1 4854 192 42 54 chr13 24516137 24516365 -77356804 - L1M4 LINE L1 -858 5288 5059 2450 64 3 0 chr13 24516365 24516660 -77356509 - AluY SINE Alu -15 296 1 4854 192 42 54 chr13 24516660 24517070 -77356099 - L1M4 LINE L1 -1087 5059 4646 750 163 0 22 chr13 24517070 24517205 -77355964 - FLAM_C SINE Alu -1 132 1 4854 192 42 54 chr13 24517205 24517851 -77355318 - L1M4 LINE L1 -1500 4646 4018 225 0 0 0 chr13 24518196 24518221 -77354948 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 387 0 0 0 chr13 24518220 24518263 -77354906 + (TG)n Simple_repeat Simple_repeat 1 43 0 279 208 13 52 chr13 24518452 24518529 -77354640 - MER103 DNA DNA -8 158 85 1029 262 80 17 chr13 24518555 24518941 -77354228 - MLT1J LTR MaLR -34 477 1 265 186 0 0 chr13 24518941 24518983 -77354186 - MER103 DNA DNA -74 92 51 582 244 45 24 chr13 24519592 24519797 -77353372 + MIR SINE MIR 11 229 -33 188 242 200 11 chr13 24519962 24520057 -77353112 + MIR SINE MIR 19 131 -77 571 269 55 79 chr13 24520474 24520847 -77352322 + L2 LINE L2 2910 3270 -2 276 154 0 0 chr13 24521299 24521351 -77351818 + (TG)n Simple_repeat Simple_repeat 1 52 0 215 208 14 83 chr13 24522093 24522165 -77351004 - MIR3 SINE MIR -41 167 101 224 281 56 11 chr13 24523013 24523102 -77350067 + L3b LINE CR1 1151 1243 -340 1681 171 14 10 chr13 24523123 24523415 -77349754 + AluJo SINE Alu 1 293 -19 286 189 245 0 chr13 24524142 24524248 -77348921 - MIR SINE MIR -70 192 61 217 254 104 0 chr13 24525043 24525110 -77348059 + MIR SINE MIR 54 127 -135 432 0 0 0 chr13 24525303 24525351 -77347818 + (CA)n Simple_repeat Simple_repeat 2 49 0 291 245 71 20 chr13 24525356 24525454 -77347715 - L1ME3 LINE L1 -95 6067 5965 203 308 11 33 chr13 24525737 24525828 -77347341 + L2 LINE L2 3141 3229 -43 692 223 0 0 chr13 24525935 24526065 -77347104 + FLAM_C SINE Alu 2 131 -2 24 0 0 0 chr13 24526224 24526248 -77346921 + AT_rich Low_complexity Low_complexity 1 24 0 2635 197 7 45 chr13 24526903 24526986 -77346183 - L1MB7 LINE L1 -1 6183 6098 1874 146 3 14 chr13 24526986 24527281 -77345888 + AluJb SINE Alu 1 292 -20 2635 197 7 45 chr13 24527281 24527791 -77345378 - L1MB7 LINE L1 -86 6098 5613 208 242 154 0 chr13 24528024 24528115 -77345054 - L2 LINE L2 -63 3250 3146 727 285 91 30 chr13 24528197 24528565 -77344604 + MLT1J2 LTR MaLR 71 440 -10 1804 160 3 30 chr13 24528736 24529036 -77344133 + AluJb SINE Alu 1 292 -20 844 128 0 0 chr13 24530356 24530473 -77342696 - FRAM SINE Alu -20 156 40 690 252 70 21 chr13 24530476 24530718 -77342451 - MIR SINE MIR -1 261 8 204 158 0 0 chr13 24530875 24530913 -77342256 + GA-rich Low_complexity Low_complexity 3 40 0 2719 107 3 3 chr13 24531160 24531524 -77341645 - THE1B LTR MaLR 0 364 1 3956 98 24 5 chr13 24531788 24532368 -77340801 + L1PB1 LINE L1 5561 6151 0 539 289 90 61 chr13 24532462 24532907 -77340262 + MLT1H LTR MaLR 1 547 -2 376 244 130 0 chr13 24533360 24533475 -77339694 - L1ME4a LINE L1 0 6121 5992 408 305 30 30 chr13 24533504 24533718 -77339451 - L1ME4a LINE L1 -226 5895 5679 1697 183 10 16 chr13 24533718 24534024 -77339145 - AluJb SINE Alu -8 304 1 408 305 30 30 chr13 24534024 24534071 -77339098 - L1ME4a LINE L1 -441 5680 5634 315 0 0 0 chr13 24534080 24534115 -77339054 + (CA)n Simple_repeat Simple_repeat 2 36 0 2351 110 19 45 chr13 24534125 24534499 -77338670 - THE1B LTR MaLR 0 364 1 7103 89 4 1 chr13 24534499 24535417 -77337752 - THE1B-int LTR MaLR 0 1580 660 3088 76 21 7 chr13 24535413 24535835 -77337334 - THE1B-int LTR MaLR -1152 428 1 * 605 116 0 12 chr13 24535835 24535921 -77337248 - THE1B LTR MaLR 0 375 291 277 226 45 11 chr13 24535964 24536052 -77337117 + L1ME LINE L1 5513 5612 -509 442 123 235 0 chr13 24536056 24536137 -77337032 + AluJ/FLAM SINE Alu 2 101 -211 3528 151 50 18 chr13 24537263 24537867 -77335302 - MER21B LTR ERV1 -113 750 128 343 238 42 35 chr13 24537869 24538012 -77335157 + L1MEc LINE L1 356 499 -5897 729 176 58 5 chr13 24538013 24538233 -77334936 + L1M4 LINE L1 4897 5182 -964 2171 147 97 1 chr13 24538311 24538815 -77334354 - L1ME4a LINE L1 -666 5518 4964 428 234 73 8 chr13 24538821 24538945 -77334224 + L1MA10 LINE L1 6201 6332 -2 29 90 0 0 chr13 24539172 24539250 -77333919 + AT_rich Low_complexity Low_complexity 1 78 0 831 186 13 46 chr13 24540091 24540410 -77332759 - MLT1A1 LTR MaLR -2 372 15 399 267 184 23 chr13 24540413 24540679 -77332490 - L2 LINE L2 -23 3249 2941 339 259 35 0 chr13 24541234 24541319 -77331850 - MIR SINE MIR -81 127 40 492 257 29 12 chr13 24541393 24541564 -77331605 - L2 LINE L2 -31 3282 3109 1544 136 55 0 chr13 24542146 24542382 -77330787 - AluSx SINE Alu -8 304 56 784 159 166 18 chr13 24542387 24542550 -77330619 - MER21B LTR ERV1 -113 750 564 562 90 0 0 chr13 24542557 24542635 -77330534 - AluSx SINE Alu -233 79 2 333 194 15 0 chr13 24543339 24543406 -77329763 + MIR SINE MIR 80 147 -115 301 278 19 9 chr13 24543699 24543807 -77329362 - MER103 DNA DNA -12 154 46 1278 171 22 44 chr13 24544027 24544301 -77328868 - L1MD3 LINE L1 0 7995 7728 847 250 107 93 chr13 24545041 24545545 -77327624 + MLT1L LTR MaLR 22 532 -83 1123 194 89 5 chr13 24545684 24546055 -77327114 - MLT1D LTR MaLR 0 505 3 186 133 0 0 chr13 24546248 24546278 -77326891 + (GA)n Simple_repeat Simple_repeat 1 30 0 413 268 36 0 chr13 24548456 24548594 -77324575 - LTR67 LTR ERVL -2 555 413 860 115 94 120 chr13 24549158 24549327 -77323842 - L1MA9 LINE L1 0 6312 6149 342 0 0 0 chr13 24549327 24549365 -77323804 + (TG)n Simple_repeat Simple_repeat 1 38 0 860 115 94 120 chr13 24549365 24549429 -77323740 - L1MA9 LINE L1 -163 6149 6085 2209 112 10 0 chr13 24549642 24549938 -77323231 + AluSx SINE Alu 1 299 -13 197 154 0 28 chr13 24550450 24550491 -77322678 - MIR SINE MIR -139 69 29 202 350 89 0 chr13 24550740 24550863 -77322306 + MIR SINE MIR 49 182 -80 691 99 124 25 chr13 24551742 24551863 -77321306 + THE1C LTR MaLR 194 326 -49 693 229 0 14 chr13 24551892 24552032 -77321137 + FLAM_A SINE Alu 2 139 -3 864 330 73 14 chr13 24552124 24552643 -77320526 + L2 LINE L2 1745 2294 -1020 744 211 0 0 chr13 24552674 24552807 -77320362 + FLAM_A SINE Alu 1 133 0 323 221 18 62 chr13 24552837 24552950 -77320219 - L1MC4 LINE L1 -17 8025 7918 203 186 51 17 chr13 24552965 24553024 -77320145 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 782 191 54 170 chr13 24553025 24553234 -77319935 - L1MC4 LINE L1 -124 7918 7686 447 143 0 0 chr13 24553234 24553311 -77319858 - L1PB1 LINE L1 -1 6150 6074 782 191 54 170 chr13 24553311 24553537 -77319632 - L1MC4 LINE L1 -356 7686 7450 494 318 13 0 chr13 24553542 24553693 -77319476 - MIR SINE MIR -76 186 34 1332 248 30 73 chr13 24553788 24554348 -77318821 - L1MC4 LINE L1 -469 7573 7038 616 266 14 28 chr13 24554397 24554615 -77318554 + L2 LINE L2 2303 2517 -797 595 239 14 7 chr13 24554689 24554831 -77318338 + MER5B DNA MER1_type 2 144 -34 1349 196 109 16 chr13 24555358 24555735 -77317434 + MER66A LTR ERV1 27 438 -40 637 323 109 37 chr13 24556149 24557326 -77315843 + L1MC4a LINE L1 3683 4957 -1189 1630 179 18 72 chr13 24557326 24557712 -77315457 + MLT1A1 LTR MaLR 1 365 0 637 323 109 37 chr13 24557712 24557796 -77315373 + L1MC4a LINE L1 4957 5034 -1112 1043 264 138 24 chr13 24558016 24558558 -77314611 + L1MC4a LINE L1 5264 5867 -1941 517 291 63 44 chr13 24558794 24558882 -77314287 + L1M4 LINE L1 4741 4826 -1320 2162 144 5 57 chr13 24558882 24559265 -77313904 - MLT1A1 LTR MaLR 0 365 3 517 291 63 44 chr13 24559265 24559540 -77313629 + L1M4 LINE L1 4826 5111 -1035 670 184 40 0 chr13 24559563 24559688 -77313481 + FLAM_A SINE Alu 1 130 -3 896 61 0 0 chr13 24559905 24560019 -77313150 - L1PA5 LINE L1 -2 6152 6039 768 173 0 29 chr13 24560069 24560208 -77312961 - AluJo SINE Alu -175 137 3 281 318 10 42 chr13 24560212 24560404 -77312765 + HAL1 LINE L1 1278 1463 -1044 2071 122 3 0 chr13 24561475 24561762 -77311407 - AluSg SINE Alu -22 288 1 45556 33 4 1 chr13 24561935 24568052 -77305117 - L1PA4 LINE L1 -3 6152 12 1810 244 35 39 chr13 24568475 24568995 -77304174 + MER97c DNA MER1_type? 1 518 -572 283 270 144 47 chr13 24569092 24569307 -77303862 + MER97c DNA MER1_type? 824 1059 -31 245 250 0 0 chr13 24570010 24570062 -77303107 + LTR30 LTR ERV1 1 52 -670 2328 81 169 157 chr13 24570062 24570655 -77302514 + LTR12 LTR ERV1 57 581 -133 907 219 0 0 chr13 24570795 24570959 -77302210 - FAM SINE Alu -16 169 6 1303 257 82 21 chr13 24570969 24571393 -77301776 + MER74B LTR ERVL 91 540 -82 249 250 68 0 chr13 24571324 24571412 -77301757 - MER88 LTR ERVL -291 173 80 * 396 0 0 0 chr13 24571913 24571957 -77301212 + (CA)n Simple_repeat Simple_repeat 2 45 0 761 346 38 3 chr13 24571972 24572319 -77300850 + MER115 DNA AcHobo 3 361 -332 240 35 0 0 chr13 24574003 24574032 -77299137 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr13 24575971 24575993 -77297176 + AT_rich Low_complexity Low_complexity 1 22 0 808 241 72 14 chr13 24576210 24576417 -77296752 + MER20 DNA MER1_type 1 219 0 354 249 137 29 chr13 24577117 24577322 -77295847 + L1MC5 LINE L1 7701 7927 -34 575 254 103 82 chr13 24578077 24578570 -77294599 - MLT1H LTR MaLR -4 545 1 410 243 196 0 chr13 24579992 24580140 -77293029 - MER5B DNA MER1_type -1 177 1 1786 279 71 1 chr13 24580500 24581167 -77292002 + L2 LINE L2 2396 3145 -168 2033 137 0 10 chr13 24581167 24581466 -77291703 - AluJb SINE Alu -6 306 11 1786 279 71 1 chr13 24581466 24581648 -77291521 + L2 LINE L2 3145 3313 0 182 294 119 24 chr13 24582459 24582585 -77290584 - MIR SINE MIR -19 243 106 1157 209 0 5 chr13 24582595 24582810 -77290359 + L1MB7 LINE L1 1 214 -6328 * 5606 174 48 13 chr13 24582807 24583930 -77289239 + L1MB7 LINE L1 4761 5976 -706 2075 137 7 0 chr13 24583930 24584223 -77288946 + AluSx SINE Alu 1 295 -17 5606 174 48 13 chr13 24584223 24584938 -77288231 + L1MB7 LINE L1 5976 6664 -18 21 36 0 0 chr13 24584939 24584967 -77288202 + AT_rich Low_complexity Low_complexity 1 28 0 401 198 10 0 chr13 24585498 24585599 -77287570 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 1775 208 14 14 chr13 24586970 24587335 -77285834 - MLT1A1 LTR MaLR 0 365 1 430 223 37 15 chr13 24587425 24587579 -77285590 - MLT1I LTR MaLR -206 203 46 416 242 33 0 chr13 24587838 24587958 -77285211 + MIR SINE MIR 136 259 -3 24 53 0 0 chr13 24587960 24587998 -77285171 + AT_rich Low_complexity Low_complexity 1 38 0 907 160 0 13 chr13 24588142 24588292 -77284877 - AluJo SINE Alu -161 151 4 354 23 0 0 chr13 24590973 24591016 -77282153 + (CA)n Simple_repeat Simple_repeat 2 44 0 205 214 125 0 chr13 24591484 24591540 -77281629 - MIR SINE MIR -85 123 61 1938 166 0 22 chr13 24591678 24591997 -77281172 + AluJb SINE Alu 1 312 0 359 244 17 26 chr13 24593555 24593670 -77279499 + MIR SINE MIR 46 159 -103 478 278 29 17 chr13 24593702 24593875 -77279294 + MIR SINE MIR 88 262 0 200 216 0 0 chr13 24595945 24595982 -77277187 + CT-rich Low_complexity Low_complexity 3 39 0 263 323 16 8 chr13 24597132 24597256 -77275913 + (TA)n Simple_repeat Simple_repeat 2 126 0 34 24 0 0 chr13 24597419 24597460 -77275709 + AT_rich Low_complexity Low_complexity 1 41 0 186 232 0 54 chr13 24597485 24597541 -77275628 + L2 LINE L2 3180 3232 -81 234 143 0 0 chr13 24598416 24598451 -77274718 + L1P LINE L1 4204 4238 -1908 615 9 0 73 chr13 24598451 24598561 -77274608 + (TCTCCC)n Simple_repeat Simple_repeat 4 105 0 6832 76 13 8 chr13 24598581 24599998 -77273171 + SVA Other Other 78 1386 0 2056 138 0 3 chr13 24600011 24600315 -77272854 + AluSg SINE Alu 1 303 -7 1757 144 27 33 chr13 24600317 24600616 -77272553 + AluSx SINE Alu 1 297 -15 286 100 0 0 chr13 24600616 24600656 -77272513 + L1MA2 LINE L1 6069 6108 -196 529 174 15 0 chr13 24600670 24600802 -77272367 + (TA)n Simple_repeat Simple_repeat 2 135 0 1645 138 0 21 chr13 24600816 24601105 -77272064 - AluSx SINE Alu -29 283 1 1190 143 10 0 chr13 24601105 24601301 -77271868 + L1MA2 LINE L1 6107 6304 0 2869 188 7 0 chr13 24601387 24601955 -77271214 + L1 LINE L1 4270 4841 -1305 4691 76 20 19 chr13 24601955 24602602 -77270567 + L1PB2 LINE L1 5504 6151 0 2230 263 57 13 chr13 24603813 24604411 -77268758 - MER115 DNA AcHobo -10 683 60 193 219 16 16 chr13 24605309 24605373 -77267796 + CT-rich Low_complexity Low_complexity 4 67 0 299 239 119 28 chr13 24606628 24606737 -77266432 + MIR3 SINE MIR 51 169 -39 212 313 240 0 chr13 24606922 24607018 -77266151 - MIR SINE MIR -62 146 28 1889 160 3 26 chr13 24607026 24607338 -77265831 - AluJo SINE Alu -7 305 1 490 298 101 6 chr13 24607898 24608056 -77265113 + MIR3 SINE MIR 23 195 -13 2327 28 7 11 chr13 24608162 24608485 -77264684 - AluY SINE Alu 0 322 1 449 234 0 2 chr13 24610182 24610272 -77262897 - MER2 DNA MER2_type -150 89 1 969 230 72 122 chr13 24610465 24610545 -77262624 + L1MC4 LINE L1 7355 7437 -605 2418 90 0 3 chr13 24610545 24610856 -77262313 + AluSg SINE Alu 1 310 0 969 230 72 122 chr13 24610856 24611376 -77261793 + L1MC4 LINE L1 7437 8042 0 312 306 68 14 chr13 24611436 24611583 -77261586 + MIR3 SINE MIR 42 196 -12 2527 78 0 0 chr13 24612767 24613075 -77260094 + AluSg SINE Alu 1 308 -2 1664 199 6 3 chr13 24615622 24615933 -77257236 + AluJo SINE Alu 1 312 0 21 0 0 0 chr13 24615966 24615987 -77257182 + AT_rich Low_complexity Low_complexity 1 21 0 1069 260 122 26 chr13 24616637 24616678 -77256491 + LTR33 LTR ERVL 55 91 -430 2114 210 128 12 chr13 24616678 24617255 -77255914 + LTR48B LTR ERV1 1 644 0 1069 260 122 26 chr13 24617255 24617632 -77255537 + LTR33 LTR ERVL 91 513 -8 192 152 0 0 chr13 24617664 24617697 -77255472 + T-rich Low_complexity Low_complexity 1 33 0 8320 12 0 1 chr13 24618706 24619682 -77253487 + L1PA3 LINE L1 5199 6173 0 472 212 62 27 chr13 24619766 24619912 -77253257 - L1MEc LINE L1 -5341 1055 905 400 318 40 11 chr13 24619948 24620124 -77253045 + MIR SINE MIR 46 226 -36 1684 144 17 50 chr13 24621302 24621601 -77251568 - AluJo SINE Alu -11 301 13 411 330 189 3 chr13 24621944 24622262 -77250907 + HsTC2 DNA Tc2 242 618 -1280 1961 217 93 28 chr13 24622596 24623248 -77249921 - L1ME3A LINE L1 -23 6141 5420 405 0 0 0 chr13 24623972 24624017 -77249152 + (CA)n Simple_repeat Simple_repeat 2 46 0 980 246 68 73 chr13 24624875 24625285 -77247884 + L2 LINE L2 2302 2709 -605 631 280 63 71 chr13 24625615 24626136 -77247033 - HAL1b LINE L1 -597 751 235 265 288 0 0 chr13 24626210 24626276 -77246893 - L2 LINE L2 0 3313 3248 363 279 115 8 chr13 24627137 24627259 -77245910 + MLT1L LTR MaLR 132 266 -349 609 249 65 20 chr13 24627365 24627629 -77245540 + MLT1L LTR MaLR 260 612 0 6213 199 15 4 chr13 24628065 24629333 -77243836 + L1P LINE L1 3220 4501 -1645 3554 27 2 0 chr13 24629358 24629920 -77243249 + L1P2 LINE L1 5107 5669 -486 308 153 0 17 chr13 24630020 24630079 -77243090 + MER51B-int LTR ERV1 3146 3203 -4613 * 1023 94 19 0 chr13 24630074 24630233 -77242936 + MER51B-int LTR ERV1 6085 6246 -1570 1613 145 0 4 chr13 24630236 24630477 -77242692 + MER51B-int LTR ERV1 7576 7815 -1 1624 100 124 0 chr13 24630479 24630729 -77242440 + MER51B LTR ERV1 1 281 -96 1321 119 2 20 chr13 24630759 24630986 -77242183 + L1P4 LINE L1 5476 5701 -462 1980 162 15 66 chr13 24630994 24631325 -77241844 + L1HS LINE L1 5652 5951 -214 2398 97 0 0 chr13 24631325 24631633 -77241536 + AluSc SINE Alu 1 308 -1 1980 162 15 66 chr13 24631633 24631714 -77241455 + L1HS LINE L1 5951 6035 -130 495 143 20 20 chr13 24631719 24631796 -77241373 + L1 LINE L1 4376 4455 -1691 755 151 0 8 chr13 24631796 24631919 -77241250 + L1PA15 LINE L1 6041 6165 0 495 143 20 20 chr13 24631919 24631939 -77241230 + L1 LINE L1 4454 4473 -1673 1039 174 24 42 chr13 24632735 24632947 -77240222 + MER3 DNA MER1_type 2 209 0 254 111 0 0 chr13 24633099 24633135 -77240034 + Alu SINE Alu 3 38 -263 2325 105 0 0 chr13 24633234 24633529 -77239640 - AluSx SINE Alu -12 300 6 7304 58 7 0 chr13 24633606 24635116 -77238053 - L1PA6 LINE L1 -2 6152 4625 9237 60 1 0 chr13 24635216 24636388 -77236781 - L1PA6 LINE L1 -1996 4150 2978 383 335 28 11 chr13 24636392 24636571 -77236598 - MARNA DNA Mariner -117 469 288 416 287 15 29 chr13 24636580 24636716 -77236453 + MIR3 SINE MIR 74 207 -1 412 250 92 43 chr13 24636717 24636792 -77236377 - MARNA DNA Mariner -286 300 230 2313 168 6 6 chr13 24636792 24637156 -77236013 + MER47A DNA MER2_type 3 366 0 412 250 92 43 chr13 24637156 24637244 -77235925 - MARNA DNA Mariner -356 230 129 24 0 0 0 chr13 24637294 24637318 -77235851 + AT_rich Low_complexity Low_complexity 1 24 0 255 302 160 56 chr13 24638658 24639032 -77234137 + L2 LINE L2 2247 2659 -655 277 339 67 67 chr13 24639117 24639433 -77233736 + L2 LINE L2 2932 3247 -25 231 305 39 94 chr13 24640428 24640556 -77232613 + MIR SINE MIR 67 187 -75 248 336 82 0 chr13 24640566 24640688 -77232481 + MIR SINE MIR 123 254 -8 312 238 0 0 chr13 24640877 24640940 -77232229 + MIR SINE MIR 200 262 0 289 273 100 27 chr13 24640953 24641103 -77232066 - L3b LINE CR1 -118 1465 1305 390 349 32 16 chr13 24641548 24641737 -77231432 + L2 LINE L2 2866 3057 -215 811 224 120 26 chr13 24643296 24643488 -77229681 + MER63A DNA MER1_type 1 210 0 547 332 71 42 chr13 24643775 24644155 -77229014 + L2 LINE L2 2880 3270 -2 512 178 92 72 chr13 24644829 24644981 -77228188 + MER112 DNA MER1_type 6 160 -100 303 276 51 41 chr13 24644983 24645081 -77228088 + L2 LINE L2 3167 3265 -7 231 303 72 59 chr13 24645988 24646140 -77227029 - MIR SINE MIR -60 202 49 301 299 0 35 chr13 24646390 24646477 -77226692 - Charlie8 DNA MER1_type -2332 85 2 815 221 127 0 chr13 24646618 24646799 -77226370 + MIR SINE MIR 37 240 -22 407 222 129 46 chr13 24648427 24648621 -77224548 - MIR SINE MIR -7 255 46 485 274 54 11 chr13 24649927 24650113 -77223056 - L2 LINE L2 -2 3311 3118 452 241 136 27 chr13 24650198 24650455 -77222714 + L1MC5 LINE L1 7631 7915 -46 207 349 40 20 chr13 24651170 24651322 -77221847 - MIR SINE MIR -49 213 59 458 318 19 26 chr13 24652457 24652611 -77220558 + MIR3 SINE MIR 16 168 -40 304 318 55 18 chr13 24652830 24652940 -77220229 + MIR SINE MIR 36 149 -59 608 211 53 119 chr13 24652950 24653287 -77219882 + HAL1 LINE L1 2081 2395 -112 535 253 60 134 chr13 24653410 24653746 -77219423 - L2 LINE L2 -19 3253 2943 7598 25 7 0 chr13 24654019 24655450 -77217719 + L1PA4 LINE L1 4700 6154 -1 25 0 0 0 chr13 24655450 24655475 -77217694 + AT_rich Low_complexity Low_complexity 1 25 0 313 339 63 25 chr13 24655782 24655944 -77217225 + MIR SINE MIR 26 192 -65 335 292 18 35 chr13 24655946 24656059 -77217110 + MIR3 SINE MIR 73 183 -25 764 300 171 32 chr13 24656298 24657024 -77216145 - L2 LINE L2 -1191 2123 1297 1332 116 0 70 chr13 24657587 24657829 -77215340 + L1PA15 LINE L1 5939 6163 -2 386 231 157 0 chr13 24659845 24659953 -77213216 - MER94 DNA DNA -9 125 1 2290 104 0 3 chr13 24660152 24660461 -77212708 + AluSg SINE Alu 1 308 -2 2107 121 3 0 chr13 24660523 24660813 -77212356 + AluSq SINE Alu 3 293 -20 319 300 0 0 chr13 24661270 24661350 -77211819 + L2 LINE L2 3234 3313 0 3518 137 28 28 chr13 24662254 24662858 -77210311 + MER6A DNA MER2_type 2 605 0 690 270 180 5 chr13 24662890 24663101 -77210068 + MIR SINE MIR 15 262 0 2336 93 3 0 chr13 24663840 24664140 -77209029 - AluSp SINE Alu -12 301 1 451 335 71 11 chr13 24664270 24664452 -77208717 - MIR SINE MIR -47 215 23 397 346 32 0 chr13 24664782 24664938 -77208231 + MIR SINE MIR 68 228 -34 391 314 10 0 chr13 24665398 24665500 -77207669 - L2 LINE L2 -1 3271 3169 2193 124 3 0 chr13 24665582 24665880 -77207289 + AluSx SINE Alu 1 299 -13 1955 111 7 4 chr13 24666776 24667082 -77206087 + AluSx SINE Alu 1 307 0 511 254 92 40 chr13 24668088 24668261 -77204908 - MIR SINE MIR -50 212 31 214 339 54 18 chr13 24668494 24668606 -77204563 - L2 LINE L2 0 3313 3198 655 184 0 14 chr13 24668920 24669067 -77204102 + L1P LINE L1 4753 4897 -1249 726 187 0 0 chr13 24669068 24669202 -77203967 - L1 LINE L1 -1455 4691 4558 1517 163 33 33 chr13 24669335 24669636 -77203533 - MER58B DNA MER1_type 0 341 41 764 261 85 15 chr13 24669796 24670068 -77203101 + MER102b DNA MER1_type 35 325 -16 422 291 166 10 chr13 24670172 24670371 -77202798 + MIR SINE MIR 19 248 -14 409 304 75 50 chr13 24670449 24670610 -77202559 - MIR3 SINE MIR -28 180 16 3969 203 5 5 chr13 24671094 24671927 -77201242 + L1P LINE L1 4304 5136 -1010 1530 189 71 0 chr13 24671925 24672263 -77200906 + L1MC4 LINE L1 7062 7423 -619 * 1575 166 14 38 chr13 24672264 24672553 -77200616 - MER1B DNA MER1_type -1 338 57 1984 186 72 23 chr13 24672564 24672965 -77200204 + L1MC4 LINE L1 7415 7844 -198 2170 114 7 0 chr13 24672965 24673263 -77199906 - AluSx SINE Alu -12 300 1 1984 186 72 23 chr13 24673263 24673335 -77199834 + L1MC4 LINE L1 7844 7911 -131 306 50 0 0 chr13 24673356 24673396 -77199773 + (GA)n Simple_repeat Simple_repeat 2 41 0 216 0 0 0 chr13 24674721 24674745 -77198424 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 1123 227 54 53 chr13 24674797 24675247 -77197922 + MLT1K LTR MaLR 81 558 -30 2788 23 0 0 chr13 24675354 24675663 -77197506 - AluYb8 SINE Alu -9 309 1 418 252 23 0 chr13 24675859 24675990 -77197179 + MER103 DNA DNA 13 146 -20 560 258 8 0 chr13 24676052 24676180 -77196989 + FLAM_A SINE Alu 1 129 -13 494 234 30 96 chr13 24677161 24677358 -77195811 + MIR SINE MIR 79 262 0 2108 146 0 0 chr13 24677988 24678290 -77194879 - AluSx SINE Alu -10 302 1 180 278 0 19 chr13 24678447 24678501 -77194668 + L3b LINE CR1 1205 1257 -326 2231 94 35 0 chr13 24678750 24679038 -77194131 - AluSc SINE Alu -11 298 1 527 203 161 8 chr13 24679292 24679410 -77193759 + MIR SINE MIR 4 139 -123 3094 236 36 29 chr13 24679730 24680560 -77192609 - L1M4 LINE L1 -1198 4948 4108 578 23 23 35 chr13 24680560 24680647 -77192522 - L1PA4 LINE L1 0 6155 6070 3094 236 36 29 chr13 24680647 24680803 -77192366 - L1M4 LINE L1 -2038 4108 3955 301 342 33 0 chr13 24680923 24681043 -77192126 - L1ME LINE L1 -5941 129 6 885 229 76 46 chr13 24681256 24681623 -77191546 - HAL1 LINE L1 0 2507 2130 254 139 0 23 chr13 24681623 24681666 -77191503 + Tigger5 DNA MER2_type 4 45 -2278 256 128 0 43 chr13 24681703 24681750 -77191419 - Tigger5 DNA MER2_type -2278 45 1 291 68 0 23 chr13 24681851 24681895 -77191274 + Tigger5 DNA MER2_type 2123 2165 -158 1037 190 119 36 chr13 24681920 24682257 -77190912 - HAL1 LINE L1 -754 1753 1389 369 0 0 0 chr13 24682258 24682299 -77190870 + (TG)n Simple_repeat Simple_repeat 2 42 0 368 342 31 12 chr13 24682443 24682604 -77190565 - HAL1 LINE L1 -2065 442 279 420 252 214 15 chr13 24683115 24683321 -77189848 - MIR SINE MIR -14 248 2 239 129 29 43 chr13 24683402 24683472 -77189697 + (TAAG)n Simple_repeat Simple_repeat 1 69 0 292 346 0 0 chr13 24684358 24684439 -77188730 - MER63 DNA MER1_type -1 1059 979 285 135 77 0 chr13 24684442 24684494 -77188675 - MER63 DNA MER1_type -312 749 694 928 141 14 0 chr13 24686861 24687003 -77186166 - AluSg/x SINE Alu -33 279 136 189 316 53 40 chr13 24687297 24687373 -77185796 - L2 LINE L2 -12 3260 3184 23 0 0 0 chr13 24687789 24687812 -77185357 + AT_rich Low_complexity Low_complexity 1 23 0 10450 32 0 1 chr13 24689282 24690548 -77182621 - L1P LINE L1 -1997 4149 2885 8446 30 0 3 chr13 24690548 24692323 -77180846 + L1PA3 LINE L1 4382 6153 -2 2311 171 11 11 chr13 24692335 24692792 -77180377 + L1P LINE L1 4481 4937 -1209 1463 157 45 114 chr13 24693061 24693463 -77179706 + MLT1A2 LTR MaLR 1 374 0 180 111 0 0 chr13 24693838 24693865 -77179304 + (TATG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 24694549 24694572 -77178597 + AT_rich Low_complexity Low_complexity 1 23 0 1363 138 47 7 chr13 24695046 24695321 -77177848 + MER33 DNA MER1_type 37 322 -2 422 252 70 14 chr13 24697173 24697316 -77175853 + MIR SINE MIR 2 152 -110 240 230 8 143 chr13 24697316 24697442 -77175727 + MIR SINE MIR 127 235 -27 568 143 19 38 chr13 24697513 24697618 -77175551 + Ricksha DNA DNA 1 103 -3143 2137 159 28 3 chr13 24697630 24697982 -77175187 + Ricksha DNA DNA 240 600 -2646 1742 140 23 44 chr13 24697974 24698167 -77175002 + Ricksha DNA DNA 2882 3021 -239 * 2278 107 0 0 chr13 24698167 24698475 -77174694 - AluSq SINE Alu -5 308 1 1742 140 23 44 chr13 24698475 24698698 -77174471 + Ricksha DNA DNA 3021 3247 -13 265 136 23 0 chr13 24698783 24698827 -77174342 + Ricksha DNA DNA 2563 2607 -247 388 303 92 50 chr13 24698916 24699134 -77174035 - MIR SINE MIR -32 230 4 309 51 0 0 chr13 24699314 24699353 -77173816 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 287 374 96 0 chr13 24699521 24699636 -77173533 - L2 LINE L2 -4 3268 3143 1668 243 131 20 chr13 24701310 24701973 -77171196 - HAL1 LINE L1 -4 2503 1767 231 298 0 0 chr13 24701973 24702030 -77171139 - MIR SINE MIR -11 251 195 265 273 129 7 chr13 24702066 24702220 -77170949 + L1P5 LINE L1 5290 5467 -684 688 268 118 21 chr13 24702270 24702465 -77170704 + L1ME3A LINE L1 5626 5859 -311 1986 195 10 45 chr13 24702465 24702948 -77170221 + MER31B LTR ERV1 1 466 0 688 268 118 21 chr13 24702948 24703039 -77170130 + L1ME3A LINE L1 5859 5940 -230 257 316 68 34 chr13 24703318 24703435 -77169734 - L2 LINE L2 -190 3082 2962 1619 179 10 67 chr13 24703588 24703990 -77169179 + L1ME1 LINE L1 4679 5057 -1089 243 243 57 0 chr13 24704002 24704072 -77169097 + L1ME1 LINE L1 5210 5283 -863 1378 172 9 4 chr13 24704073 24704305 -77168864 + AluJb SINE Alu 67 299 -13 3180 223 77 26 chr13 24704306 24705136 -77168033 + L1ME1 LINE L1 5275 6146 -20 309 294 46 46 chr13 24705160 24705313 -77167856 - L2 LINE L2 -605 2709 2557 226 384 34 20 chr13 24705859 24706005 -77167164 + MIR3 SINE MIR 2 149 -59 1190 167 0 0 chr13 24706826 24707006 -77166163 + AluJb SINE Alu 1 180 -132 460 328 69 10 chr13 24707357 24707732 -77165437 - L1 LINE L1 -1058 5088 4674 1037 195 0 19 chr13 24707750 24707965 -77165204 - L1ME LINE L1 -642 5524 5314 656 238 72 6 chr13 24707969 24708150 -77165019 - L1MC4 LINE L1 -1374 6668 6476 926 191 10 10 chr13 24708472 24708681 -77164488 - L1ME LINE L1 -816 5330 5122 367 276 16 42 chr13 24708689 24708845 -77164324 - L1ME LINE L1 -2008 4138 3987 285 310 185 33 chr13 24708975 24709159 -77164010 + MIR SINE MIR 14 225 -37 284 347 0 0 chr13 24709220 24709292 -77163877 - L2 LINE L2 -2 3311 3240 1852 113 14 0 chr13 24710170 24710445 -77162724 + L1PA15 LINE L1 5884 6162 -3 240 294 39 0 chr13 24712937 24713039 -77160130 + L1ME LINE L1 5757 5862 -259 25 31 0 0 chr13 24716005 24716037 -77157132 + AT_rich Low_complexity Low_complexity 1 32 0 1893 143 7 0 chr13 24718186 24718459 -77154710 - MER1B DNA MER1_type -64 275 1 822 275 226 25 chr13 24718517 24718924 -77154245 + L2 LINE L2 2823 3311 -2 317 316 30 77 chr13 24719212 24719446 -77153723 + L2 LINE L2 2980 3202 -111 387 183 0 0 chr13 24719446 24719506 -77153663 + MER20 DNA MER1_type 160 219 0 511 300 116 38 chr13 24720149 24720469 -77152700 - L3b LINE CR1 -116 1467 1123 490 224 146 18 chr13 24720518 24720683 -77152486 - MER5A DNA MER1_type 0 189 4 209 236 28 28 chr13 24720895 24721001 -77152168 + (TA)n Simple_repeat Simple_repeat 1 106 0 264 252 45 81 chr13 24722976 24723087 -77150082 + LTR33A LTR ERVL 56 162 -361 1167 188 14 14 chr13 24723179 24723397 -77149772 + MER58A DNA MER1_type 2 219 -5 231 146 0 24 chr13 24723541 24723582 -77149587 + LTR33A LTR ERVL 458 497 -26 1991 96 68 4 chr13 24724432 24724712 -77148457 - AluSp SINE Alu -13 300 3 248 252 108 0 chr13 24724885 24724996 -77148173 - L1ME3A LINE L1 -87 6083 5961 1829 147 7 24 chr13 24725118 24725411 -77147758 - AluJo SINE Alu -12 300 13 21 36 0 0 chr13 24725594 24725622 -77147547 + AT_rich Low_complexity Low_complexity 1 28 0 275 327 48 58 chr13 24726219 24726323 -77146846 + MIR SINE MIR 28 130 -78 270 298 107 0 chr13 24726339 24726423 -77146746 + MIR3 SINE MIR 105 197 -11 221 347 92 25 chr13 24728335 24728531 -77144638 + L2 LINE L2 2851 3059 -213 2338 74 0 10 chr13 24728730 24729028 -77144141 + AluSp SINE Alu 1 295 -18 377 393 11 6 chr13 24729976 24730154 -77143015 + L2 LINE L2 2565 2743 -571 1130 149 6 0 chr13 24730426 24730600 -77142569 - FAM SINE Alu 0 175 1 194 385 46 9 chr13 24730625 24730734 -77142435 + L2 LINE L2 3142 3254 -18 280 323 72 36 chr13 24731896 24732063 -77141106 - L3 LINE CR1 -6 1571 1399 2497 60 0 0 chr13 24732247 24732546 -77140623 + AluY SINE Alu 1 299 -12 2414 125 8 5 chr13 24732653 24733052 -77140117 + L1MA4A LINE L1 5900 6299 -4 264 248 78 179 chr13 24733298 24733580 -77139589 + MIR SINE MIR 10 262 0 22 0 0 0 chr13 24734058 24734080 -77139089 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 24734515 24734537 -77138632 + AT_rich Low_complexity Low_complexity 1 22 0 622 275 60 0 chr13 24735684 24735866 -77137303 + MIR SINE MIR 60 252 -10 254 256 23 12 chr13 24735868 24735954 -77137215 + (TTA)n Simple_repeat Simple_repeat 3 89 0 47 24 4 0 chr13 24737895 24737993 -77135176 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr13 24738741 24738771 -77134398 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr13 24739392 24739435 -77133734 + AT_rich Low_complexity Low_complexity 1 43 0 1562 157 16 36 chr13 24741061 24741366 -77131803 - L1MA7 LINE L1 -3 6288 5990 660 273 39 61 chr13 24743348 24743673 -77129496 - L2 LINE L2 -276 3037 2723 1274 209 90 47 chr13 24743721 24744123 -77129046 + LTR40b LTR ERVL 44 462 0 3852 248 81 120 chr13 24744125 24746306 -77126863 - L2 LINE L2 -656 2658 563 192 347 32 11 chr13 24746312 24746407 -77126762 - L2 LINE L2 -3059 255 159 622 243 80 42 chr13 24746699 24747014 -77126155 - L1MD3 LINE L1 -1984 5824 5613 336 320 44 61 chr13 24747257 24747367 -77125802 + MIR SINE MIR 3 110 -152 2176 127 0 0 chr13 24747367 24747674 -77125495 + AluSx SINE Alu 1 307 -5 336 320 44 61 chr13 24747674 24747744 -77125425 + MIR SINE MIR 110 180 -82 198 222 0 0 chr13 24747793 24747847 -77125322 + (TTA)n Simple_repeat Simple_repeat 1 54 0 405 0 0 0 chr13 24750453 24750498 -77122671 + (CA)n Simple_repeat Simple_repeat 2 46 0 1015 47 0 8 chr13 24751549 24751678 -77121491 + L1PA3 LINE L1 6026 6153 -2 198 91 0 0 chr13 24751684 24751717 -77121452 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2101 127 33 33 chr13 24752280 24752643 -77120526 + THE1B LTR MaLR 1 363 -1 204 125 62 0 chr13 24753140 24753188 -77119981 + (TA)n Simple_repeat Simple_repeat 2 52 0 510 302 29 71 chr13 24754219 24754527 -77118642 + L2 LINE L2 2977 3271 -1 2139 113 0 0 chr13 24754712 24755004 -77118165 + AluSg SINE Alu 1 292 -18 1819 135 71 17 chr13 24757488 24757784 -77115385 - AluSx SINE Alu 0 312 1 746 190 47 65 chr13 24758227 24758459 -77114710 + L1MA7 LINE L1 6021 6248 -43 310 336 82 9 chr13 24759707 24759817 -77113352 - L2 LINE L2 -2 3311 3194 2464 81 0 3 chr13 24760497 24760807 -77112362 - AluY SINE Alu 0 311 3 577 264 56 76 chr13 24761620 24761923 -77111246 + L2 LINE L2 3017 3313 0 185 184 0 0 chr13 24762082 24762120 -77111049 + L2 LINE L2 3015 3052 -261 188 366 0 0 chr13 24762257 24762328 -77110841 + L2 LINE L2 3201 3271 -1 380 402 94 18 chr13 24762938 24763162 -77110007 - L2 LINE L2 0 3272 3032 946 228 123 19 chr13 24763163 24763522 -77109647 - Charlie7 DNA MER1_type -123 2489 2094 231 326 174 0 chr13 24763826 24763964 -77109205 - L2 LINE L2 -559 2755 2594 550 184 48 68 chr13 24764385 24764532 -77108637 + L2 LINE L2 3159 3302 -11 1382 230 53 65 chr13 24764536 24764970 -77108199 + LTR16A1 LTR ERVL 29 457 0 239 0 0 31 chr13 24765236 24765268 -77107901 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2121 87 7 14 chr13 24765473 24765793 -77107376 - AluY SINE Alu 0 318 1 2155 68 0 0 chr13 24765795 24766074 -77107095 - L1PA6 LINE L1 -1 6153 5875 2958 53 0 0 chr13 24766075 24766497 -77106672 + L1P2 LINE L1 5205 5626 -528 218 302 151 9 chr13 24767197 24767303 -77105866 + L3 LINE CR1 586 706 -871 13601 38 1 1 chr13 24767636 24769292 -77103877 - L1PA4 LINE L1 -1377 4769 3114 7119 36 7 22 chr13 24769292 24770691 -77102478 + L1PA4 LINE L1 4770 6155 0 2241 164 6 81 chr13 24770691 24770807 -77102362 + Tigger1 DNA MER2_type 1471 1594 -824 2251 108 0 0 chr13 24770807 24771142 -77102027 + AluSc SINE Alu 1 309 0 213 39 0 0 chr13 24771142 24771168 -77102001 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 2241 164 6 81 chr13 24771168 24771544 -77101625 + Tigger1 DNA MER2_type 1592 1927 -491 811 261 115 0 chr13 24771563 24771789 -77101380 + MIR SINE MIR 1 252 -10 22 35 0 0 chr13 24771789 24771818 -77101351 + AT_rich Low_complexity Low_complexity 1 29 0 180 301 133 0 chr13 24771819 24771902 -77101267 + L3b LINE CR1 1116 1209 -374 19961 65 1 1 chr13 24772781 24776207 -77096962 + L1PA6 LINE L1 2722 6152 -2 1661 85 0 0 chr13 24776284 24776485 -77096684 + AluSq SINE Alu 6 206 -107 5796 96 5 17 chr13 24777747 24777768 -77095401 - L1MA3 LINE L1 0 6305 6285 2013 112 115 15 chr13 24777768 24778098 -77095071 + THE1B LTR MaLR 2 364 0 5796 96 5 17 chr13 24778098 24778939 -77094230 - L1MA3 LINE L1 -20 6285 5454 22 70 0 0 chr13 24779093 24779136 -77094033 + AT_rich Low_complexity Low_complexity 1 43 0 187 329 13 13 chr13 24779384 24779460 -77093709 - MIR3 SINE MIR -22 186 111 651 266 102 9 chr13 24779469 24779811 -77093358 + L1M4 LINE L1 3001 3374 -2772 26 0 0 0 chr13 24780192 24780218 -77092951 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr13 24780383 24780409 -77092760 + AT_rich Low_complexity Low_complexity 1 26 0 1509 156 4 0 chr13 24781072 24781316 -77091853 - L1PA16 LINE L1 -12 6154 5910 343 180 117 54 chr13 24781898 24782009 -77091160 - L1M4 LINE L1 -1703 4443 4326 307 200 9 118 chr13 24782020 24782130 -77091039 - L1MC4 LINE L1 -1331 6711 6614 1803 234 96 12 chr13 24782147 24782753 -77090416 - L1M4 LINE L1 -1807 4339 3683 894 261 100 22 chr13 24782746 24783195 -77089974 - L1MEc LINE L1 -4688 2434 1951 * 480 264 133 22 chr13 24783202 24783517 -77089652 - L1MEc LINE L1 -4890 1731 1306 1213 128 79 57 chr13 24785647 24785874 -77087295 + MER46A DNA MER2_type 3 234 -2 538 319 27 11 chr13 24785879 24786064 -77087105 - MIR SINE MIR -32 230 43 500 248 55 9 chr13 24786392 24786501 -77086668 + L2 LINE L2 3158 3271 -1 1556 181 38 0 chr13 24786613 24786733 -77086436 + AluJo SINE Alu 1 115 -197 230 0 33 0 chr13 24786733 24786763 -77086406 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1556 181 38 0 chr13 24786763 24786908 -77086261 + AluJo SINE Alu 115 276 -36 447 68 0 0 chr13 24786919 24786978 -77086191 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 21 0 0 0 chr13 24787233 24787254 -77085915 + AT_rich Low_complexity Low_complexity 1 21 0 334 250 0 22 chr13 24787897 24787989 -77085180 + CT-rich Low_complexity Low_complexity 3 92 0 635 330 121 42 chr13 24787994 24788867 -77084302 - L2 LINE L2 -8 3264 2325 22 35 0 0 chr13 24789201 24789230 -77083939 + AT_rich Low_complexity Low_complexity 1 29 0 207 301 0 27 chr13 24789942 24790015 -77083154 + GA-rich Low_complexity Low_complexity 2 72 0 218 317 40 40 chr13 24790999 24791100 -77082069 + MIR3 SINE MIR 105 205 -3 277 119 34 0 chr13 24791135 24791194 -77081975 + L1ME4a LINE L1 6061 6121 0 23 0 0 0 chr13 24791692 24791715 -77081454 + AT_rich Low_complexity Low_complexity 1 23 0 286 267 103 67 chr13 24792440 24792531 -77080638 + L1MC5 LINE L1 7505 7591 -370 1600 199 3 13 chr13 24792531 24792832 -77080337 - AluJb SINE Alu -12 300 3 286 267 103 67 chr13 24792832 24793099 -77080070 + L1MC5 LINE L1 7591 7876 -85 217 236 127 0 chr13 24793171 24793226 -77079943 + MIR SINE MIR 200 261 -1 432 318 115 5 chr13 24793282 24793474 -77079695 + MIR SINE MIR 20 232 -30 180 345 71 9 chr13 24793627 24793740 -77079429 - L2 LINE L2 -212 3060 2941 2367 57 23 3 chr13 24793793 24794094 -77079075 + AluY SINE Alu 1 307 -4 24 32 0 0 chr13 24794385 24794416 -77078753 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr13 24794529 24794550 -77078619 + (A)n Simple_repeat Simple_repeat 1 21 0 2212 116 0 0 chr13 24794757 24795050 -77078119 - AluSx SINE Alu -19 293 1 1918 171 0 10 chr13 24795198 24795508 -77077661 - AluJb SINE Alu -4 308 2 2388 79 3 0 chr13 24795514 24795817 -77077352 - AluSp SINE Alu -9 304 1 23 33 0 0 chr13 24796335 24796365 -77076804 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 24797451 24797479 -77075690 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr13 24797751 24797774 -77075395 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2066 127 0 10 chr13 24797778 24798070 -77075099 - AluSx SINE Alu -23 289 1 209 267 0 0 chr13 24798106 24798151 -77075018 - L2 LINE L2 -4 3309 3265 267 310 35 49 chr13 24798318 24798460 -77074709 - MIR3 SINE MIR 0 208 69 523 332 20 5 chr13 24800264 24800466 -77072703 - MIR SINE MIR -40 222 18 22 56 0 0 chr13 24800542 24800578 -77072591 + AT_rich Low_complexity Low_complexity 1 36 0 442 332 121 33 chr13 24800735 24801441 -77071728 - L2 LINE L2 -10 3262 2482 21 0 0 0 chr13 24801983 24802004 -77071165 + AT_rich Low_complexity Low_complexity 1 21 0 2315 74 0 13 chr13 24802460 24802772 -77070397 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 24802782 24802803 -77070366 + AT_rich Low_complexity Low_complexity 1 21 0 237 212 15 15 chr13 24803460 24803526 -77069643 + (TA)n Simple_repeat Simple_repeat 2 67 0 721 196 0 0 chr13 24803529 24803641 -77069528 - FLAM_A SINE Alu -30 112 1 23 33 0 0 chr13 24803659 24803689 -77069480 + AT_rich Low_complexity Low_complexity 1 30 0 544 278 68 35 chr13 24803751 24803978 -77069191 - MIR SINE MIR -16 246 13 265 338 35 21 chr13 24804084 24804229 -77068940 - L2 LINE L2 -214 3058 2912 199 260 71 55 chr13 24804491 24804618 -77068551 - L2 LINE L2 -1317 1997 1869 332 319 184 20 chr13 24805187 24805795 -77067374 + L2 LINE L2 2174 2881 -433 494 368 93 33 chr13 24805884 24806333 -77066836 + L2 LINE L2 2498 2973 -341 334 317 48 10 chr13 24806729 24806833 -77066336 - L2 LINE L2 0 3272 3165 214 208 19 0 chr13 24807297 24807350 -77065819 + CT-rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chr13 24807675 24807711 -77065458 + AT_rich Low_complexity Low_complexity 1 36 0 219 69 0 0 chr13 24807926 24807955 -77065214 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 275 194 37 0 chr13 24808108 24808216 -77064953 + (TA)n Simple_repeat Simple_repeat 1 112 0 2217 124 0 0 chr13 24808315 24808613 -77064556 + AluSg SINE Alu 1 298 -12 1682 164 11 4 chr13 24809340 24809608 -77063561 + AluJb SINE Alu 1 270 -42 189 0 0 0 chr13 24809616 24809637 -77063532 + (TC)n Simple_repeat Simple_repeat 2 22 0 254 109 0 0 chr13 24809659 24809705 -77063464 + LTR66 LTR ERVL 394 439 -171 193 303 56 22 chr13 24809761 24809850 -77063319 + MER5B DNA MER1_type 87 178 0 22 35 0 0 chr13 24809858 24809887 -77063282 + AT_rich Low_complexity Low_complexity 1 29 0 201 263 0 0 chr13 24810048 24810105 -77063064 + (TAA)n Simple_repeat Simple_repeat 2 58 0 250 296 169 17 chr13 24810106 24810278 -77062891 - MIR SINE MIR -1 261 64 270 240 47 54 chr13 24812059 24812188 -77060981 + MER103 DNA DNA 8 135 -31 270 0 0 0 chr13 24812567 24812597 -77060572 + (CA)n Simple_repeat Simple_repeat 2 31 0 446 38 0 0 chr13 24816482 24816535 -77056634 + (TATG)n Simple_repeat Simple_repeat 2 54 0 713 224 99 48 chr13 24816701 24816887 -77056282 - L1MC4 LINE L1 -1 8041 7831 2578 97 22 8 chr13 24816887 24817257 -77055912 - THE1C LTR MaLR 0 375 1 713 224 99 48 chr13 24817257 24817383 -77055786 - L1MC4 LINE L1 -211 7831 7713 294 336 86 51 chr13 24817398 24817770 -77055399 - L2 LINE L2 -780 2534 2150 207 242 15 38 chr13 24818038 24818170 -77054999 + CT-rich Low_complexity Low_complexity 3 131 0 897 217 137 0 chr13 24818289 24818538 -77054631 + L1MC4 LINE L1 6460 6742 -1300 5911 60 26 50 chr13 24818570 24819632 -77053537 + SVA Other Other 7 868 -554 5385 71 4 1 chr13 24820709 24821411 -77051758 + L1PA11 LINE L1 5463 6166 -8 274 157 0 0 chr13 24821881 24821932 -77051237 + L1MC4 LINE L1 6652 6702 -1340 350 346 11 33 chr13 24822082 24822264 -77050905 - MER5B DNA MER1_type 0 178 1 446 0 19 0 chr13 24823183 24823237 -77049932 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 652 200 0 0 chr13 24823252 24823367 -77049802 - FLAM_C SINE Alu -20 123 9 509 71 47 12 chr13 24824100 24824185 -77048984 - L1P LINE L1 -1762 4384 4297 1798 67 20 20 chr13 24824185 24824438 -77048731 + L1PA7 LINE L1 5900 6153 -1 1793 167 7 3 chr13 24824445 24824732 -77048437 + AluJb SINE Alu 9 296 -16 597 289 79 21 chr13 24824885 24825075 -77048094 - MIR SINE MIR -1 261 61 2681 32 3 0 chr13 24825466 24825776 -77047393 + AluY SINE Alu 1 311 0 351 0 0 0 chr13 24825782 24825821 -77047348 + (TA)n Simple_repeat Simple_repeat 2 40 0 2163 249 20 15 chr13 24827327 24827985 -77045184 + L1P LINE L1 3013 3673 -2473 26 30 0 0 chr13 24828471 24828504 -77044665 + AT_rich Low_complexity Low_complexity 1 33 0 450 305 124 24 chr13 24830228 24830395 -77042774 - MIR SINE MIR -3 259 72 213 358 78 26 chr13 24830395 24830588 -77042581 + MIR SINE MIR 1 203 -59 24 0 0 0 chr13 24831239 24831263 -77041906 + AT_rich Low_complexity Low_complexity 1 24 0 390 240 20 0 chr13 24831499 24831599 -77041570 + MLT1D LTR MaLR 402 503 -2 362 236 69 48 chr13 24831959 24832110 -77041059 - MIR SINE MIR -6 256 100 198 267 59 59 chr13 24832143 24832278 -77040891 - L2 LINE L2 -1025 2289 2155 499 321 58 26 chr13 24833400 24833590 -77039579 - MIR SINE MIR -59 203 8 481 208 38 9 chr13 24833678 24833784 -77039385 + MER3 DNA MER1_type 1 109 -100 433 86 0 0 chr13 24833795 24833853 -77039316 - Alu SINE Alu -16 293 236 282 308 11 33 chr13 24834020 24834111 -77039058 + L2 LINE L2 3186 3274 -39 181 250 42 0 chr13 24834224 24834272 -77038897 - L2 LINE L2 -528 2786 2737 258 280 13 13 chr13 24834609 24834684 -77038485 + L2 LINE L2 1851 1925 -1389 2770 255 103 8 chr13 24834687 24835728 -77037441 + L2 LINE L2 2039 3272 -41 584 361 95 22 chr13 24835780 24836315 -77036854 + L2 LINE L2 1931 2504 -810 185 339 35 58 chr13 24836465 24836636 -77036533 + L2 LINE L2 3146 3312 -1 702 283 113 20 chr13 24839028 24839588 -77033581 - L1ME LINE L1 -348 5822 5202 490 296 74 7 chr13 24839725 24840022 -77033147 - L1ME LINE L1 -1300 4846 4530 21 0 0 0 chr13 24840141 24840162 -77033007 + AT_rich Low_complexity Low_complexity 1 21 0 361 329 47 0 chr13 24840313 24840462 -77032707 - L1ME LINE L1 -2036 4110 3955 2215 102 0 13 chr13 24840834 24841137 -77032032 + AluSc SINE Alu 1 299 -10 5784 135 12 3 chr13 24841150 24842070 -77031099 - L1P4 LINE L1 -1200 4946 4019 2254 153 40 1 chr13 24842063 24842555 -77030614 + L1P4 LINE L1 4947 5455 -713 * 378 61 0 0 chr13 24843266 24843315 -77029854 + (CA)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr13 24843481 24843510 -77029659 + AT_rich Low_complexity Low_complexity 1 29 0 3363 242 110 16 chr13 24844128 24845249 -77027920 - L1MC4 LINE L1 -64 7978 6662 1884 138 33 0 chr13 24845388 24845690 -77027479 + AluSx SINE Alu 1 311 0 950 223 11 0 chr13 24845989 24846173 -77026996 + MER5A DNA MER1_type 4 189 0 220 100 20 20 chr13 24848169 24848219 -77024950 + (CA)n Simple_repeat Simple_repeat 1 50 0 2900 78 20 8 chr13 24848220 24848615 -77024554 - MLT2A1 LTR ERVL -44 400 1 5524 197 39 7 chr13 24848615 24850258 -77022911 - L1P4 LINE L1 -456 5710 4019 284 175 0 123 chr13 24850259 24850373 -77022796 - L1M4 LINE L1 -815 5331 5232 603 151 25 0 chr13 24850492 24850611 -77022558 - MLT2B1 LTR ERVL -398 122 1 1818 171 0 16 chr13 24851508 24851824 -77021345 - AluJo SINE Alu -1 311 1 270 0 0 0 chr13 24851999 24852029 -77021140 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1724 189 0 0 chr13 24852034 24852309 -77020860 - AluSx SINE Alu -37 275 1 824 211 0 7 chr13 24852365 24852517 -77020652 - MER58B DNA MER1_type -3 338 188 234 272 162 15 chr13 24852539 24852553 -77020616 - L1MA10 LINE L1 -2 6332 6319 1454 185 120 3 chr13 24852553 24852697 -77020472 - L1ME1 LINE L1 -5 6161 6018 592 237 43 38 chr13 24852697 24852908 -77020261 - L1MB4 LINE L1 -191 5989 5778 428 98 39 0 chr13 24852957 24853059 -77020110 + (TA)n Simple_repeat Simple_repeat 2 107 0 608 206 187 14 chr13 24853649 24853863 -77019306 - HsTC2 DNA Tc2 0 1900 1650 201 111 22 22 chr13 24853866 24853911 -77019258 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 10450 32 0 1 chr13 24854074 24855340 -77017829 - L1P LINE L1 -1997 4149 2885 8446 30 0 3 chr13 24855340 24857117 -77016052 + L1PA3 LINE L1 4382 6155 0 496 223 127 0 chr13 24857263 24857429 -77015740 - L2 LINE L2 -742 2572 2386 2267 98 10 0 chr13 24857757 24858062 -77015107 - AluSx SINE Alu -4 308 1 2254 101 10 3 chr13 24858758 24859064 -77014105 - AluSx SINE Alu -2 310 3 187 242 65 32 chr13 24859081 24859143 -77014026 - L2 LINE L2 -4 3309 3246 554 88 0 25 chr13 24859506 24859586 -77013583 + MSTB1 LTR MaLR 302 379 -53 207 0 0 0 chr13 24859588 24859611 -77013558 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6978 156 19 16 chr13 24859620 24861873 -77011296 - L1MA3 LINE L1 -3 6302 4044 1794 123 82 7 chr13 24861883 24862176 -77010993 + MSTA LTR MaLR 1 315 -113 378 212 168 62 chr13 24862897 24863076 -77010093 - HAL1b LINE L1 -201 1147 950 1009 266 22 33 chr13 24863152 24863520 -77009649 + L1ME1 LINE L1 5796 6159 -7 610 222 50 16 chr13 24864098 24864328 -77008841 + L1ME2 LINE L1 5796 6031 -144 22 0 0 0 chr13 24864450 24864472 -77008697 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr13 24864666 24864695 -77008474 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 222 28 chr13 24865682 24865826 -77007343 - L2 LINE L2 -856 2458 2287 1543 168 57 20 chr13 24865885 24866182 -77006987 + AluJo SINE Alu 5 312 0 285 109 0 0 chr13 24866191 24866237 -77006932 + (GGGGA)n Simple_repeat Simple_repeat 5 50 0 239 250 0 69 chr13 24867688 24867804 -77005365 + HAL1 LINE L1 1156 1263 -1244 1591 185 13 22 chr13 24867922 24868236 -77004933 + AluJo SINE Alu 1 311 -1 250 271 9 28 chr13 24868241 24868348 -77004821 + HAL1 LINE L1 1912 2016 -491 959 256 30 53 chr13 24868460 24868933 -77004236 + HAL1 LINE L1 2040 2501 -6 751 235 58 86 chr13 24869838 24870267 -77002902 - L1MC4 LINE L1 0 8042 7626 4846 82 28 10 chr13 24870511 24870865 -77002304 + L1PB2 LINE L1 5428 5774 -377 444 37 0 0 chr13 24870865 24870919 -77002250 + (CA)n Simple_repeat Simple_repeat 2 55 0 4846 82 28 10 chr13 24870919 24871274 -77001895 + L1PB2 LINE L1 5774 6150 -1 2436 70 0 3 chr13 24871296 24871595 -77001574 + AluY SINE Alu 1 298 -13 22 0 0 0 chr13 24871642 24871664 -77001505 + AT_rich Low_complexity Low_complexity 1 22 0 1110 158 38 25 chr13 24872488 24872601 -77000568 + L1MA9 LINE L1 5714 5824 -488 2529 103 14 0 chr13 24872601 24872951 -77000218 - THE1A LTR MaLR 0 355 1 1110 158 38 25 chr13 24872951 24873077 -77000092 + L1MA9 LINE L1 5824 5956 -356 639 246 58 73 chr13 24873076 24873406 -76999763 - L1M3e LINE L1 -5208 1822 1431 * 2293 114 0 0 chr13 24873830 24874138 -76999031 - AluSg SINE Alu -2 308 1 1953 144 35 32 chr13 24874982 24875356 -76997813 - THE1C LTR MaLR 0 375 1 308 289 18 44 chr13 24876023 24876137 -76997032 - MIR3 SINE MIR -25 183 73 313 339 63 25 chr13 24876139 24876301 -76996868 - MIR SINE MIR -65 143 26 25 0 0 0 chr13 24876608 24876633 -76996536 + AT_rich Low_complexity Low_complexity 1 25 0 7656 27 0 0 chr13 24876633 24877591 -76995578 - L1PA4 LINE L1 -1 6154 5199 5439 193 37 26 chr13 24878277 24878382 -76994787 - L1M1 LINE L1 -5292 2273 2171 2417 118 34 14 chr13 24878382 24878739 -76994430 + THE1B LTR MaLR 1 364 0 5439 193 37 26 chr13 24878739 24880160 -76993009 - L1M1 LINE L1 -5394 2171 16 237 275 175 17 chr13 24880209 24880329 -76992840 - MIR SINE MIR -121 141 3 193 309 82 21 chr13 24880686 24880783 -76992386 - L3b LINE CR1 -182 1401 1299 22 0 0 0 chr13 24880853 24880875 -76992294 + AT_rich Low_complexity Low_complexity 1 22 0 233 167 0 56 chr13 24880945 24881017 -76992152 + A-rich Low_complexity Low_complexity 1 68 0 229 212 424 0 chr13 24931350 24931449 -76941720 - MIR SINE MIR 0 262 122 740 204 44 7 chr13 24931712 24931849 -76941320 + MER5A DNA MER1_type 34 175 -14 860 211 12 0 chr13 24932390 24932556 -76940613 - LTR33 LTR ERVL -28 493 326 407 149 25 246 chr13 24932642 24932923 -76940246 + L1M4 LINE L1 2476 2694 -3452 1060 202 28 44 chr13 24933030 24933124 -76940045 + L1M4 LINE L1 2675 2769 -3377 2163 108 3 19 chr13 24933124 24933431 -76939738 + AluSq SINE Alu 1 302 -11 1060 202 28 44 chr13 24933431 24933584 -76939585 + L1M4 LINE L1 2769 2918 -3228 279 294 20 39 chr13 24933584 24933686 -76939483 + MER117 DNA MER1_type 98 197 0 284 310 65 73 chr13 24933813 24934045 -76939124 + L2 LINE L2 2204 2433 -881 801 211 54 111 chr13 24934204 24934555 -76938614 + Charlie2 DNA MER1_type 2532 2862 0 208 292 167 0 chr13 24934596 24934668 -76938501 + L2 LINE L2 3187 3270 -2 826 322 31 6 chr13 24934955 24935275 -76937894 + MER57-int LTR ERV1 6816 7143 -394 1161 269 108 18 chr13 24935277 24935667 -76937502 + MER57B LTR ERV1 1 425 -9 1429 157 0 22 chr13 24935700 24935923 -76937246 - MER20 DNA MER1_type -1 218 1 2056 126 3 17 chr13 24936561 24936708 -76936461 + AluSx SINE Alu 3 150 -162 2695 111 6 6 chr13 24936708 24937070 -76936099 + THE1B LTR MaLR 3 364 0 2056 126 3 17 chr13 24937070 24937223 -76935946 + AluSx SINE Alu 150 299 -13 495 247 143 17 chr13 24938746 24938977 -76934192 - MIR SINE MIR 0 262 3 183 100 0 0 chr13 24939087 24939117 -76934052 + (A)n Simple_repeat Simple_repeat 1 30 0 2302 43 20 23 chr13 24939207 24939508 -76933661 - AluY SINE Alu -11 300 1 324 312 55 18 chr13 24939799 24939908 -76933261 + MIR3 SINE MIR 75 187 -21 308 309 81 7 chr13 24940204 24940340 -76932829 - MIR3 SINE MIR -34 174 29 224 264 0 0 chr13 24941867 24941920 -76931249 - MIR SINE MIR -53 209 157 416 200 91 9 chr13 24941979 24942089 -76931080 - MIR SINE MIR -56 206 88 1665 152 0 19 chr13 24942252 24942515 -76930654 - AluJo SINE Alu -16 296 39 202 339 17 0 chr13 24942519 24942578 -76930591 - L2 LINE L2 -16 3256 3197 193 328 68 68 chr13 24942686 24942921 -76930248 - L2 LINE L2 -224 3048 2814 2337 103 3 0 chr13 24943572 24943882 -76929287 + AluSx SINE Alu 1 311 -1 566 232 14 70 chr13 24944076 24944218 -76928951 - MER5A DNA MER1_type 0 189 56 2297 111 0 16 chr13 24944309 24944625 -76928544 + AluSp SINE Alu 1 311 -2 1949 153 10 0 chr13 24944809 24945104 -76928065 - AluJb SINE Alu -14 298 1 350 284 148 7 chr13 24945209 24945364 -76927805 - L1MC/D LINE L1 -2376 5432 5256 721 277 62 22 chr13 24945471 24945597 -76927572 + MIR SINE MIR 20 160 -102 2197 100 10 3 chr13 24945597 24945896 -76927273 + AluSc SINE Alu 1 301 -8 721 277 62 22 chr13 24945896 24945993 -76927176 + MIR SINE MIR 160 252 -10 189 0 0 0 chr13 24947321 24947342 -76925827 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 21 0 0 0 chr13 24947342 24947363 -76925806 + AT_rich Low_complexity Low_complexity 1 21 0 2188 119 0 0 chr13 24947363 24947649 -76925520 - AluSx SINE Alu -26 286 1 206 276 52 17 chr13 24947998 24948056 -76925113 + L2 LINE L2 2942 3001 -312 375 263 113 30 chr13 24948106 24948239 -76924930 + L2 LINE L2 3166 3309 -4 23 54 0 0 chr13 24948418 24948455 -76924714 + AT_rich Low_complexity Low_complexity 1 37 0 1311 185 8 4 chr13 24948455 24948709 -76924460 - L1MB3 LINE L1 -7 6176 5922 1663 223 112 23 chr13 24948744 24949216 -76923953 - MLT2B1 LTR ERVL -6 514 1 3150 123 6 12 chr13 24949216 24949704 -76923465 - L1MB3 LINE L1 -255 5928 5444 320 258 15 0 chr13 24950600 24950666 -76922503 - L2 LINE L2 -21 3251 3185 862 278 119 68 chr13 24950761 24951272 -76921897 + MER21B LTR ERV1 1 537 -326 342 209 73 36 chr13 24951307 24951417 -76921752 + MER21B LTR ERV1 626 739 -124 192 349 0 0 chr13 24951549 24951615 -76921554 - MIR SINE MIR -113 149 84 38 39 0 0 chr13 24952378 24952430 -76920739 + AT_rich Low_complexity Low_complexity 1 52 0 324 263 113 27 chr13 24952438 24952624 -76920545 - MER20B DNA MER1_type -550 233 32 533 96 12 48 chr13 24952772 24952855 -76920314 - MADE1 DNA Mariner 0 80 1 1911 110 10 55 chr13 24953849 24954157 -76919012 - AluSc SINE Alu -15 294 1 2388 88 3 0 chr13 24954992 24955299 -76917870 + AluSc SINE Alu 2 309 0 572 246 205 8 chr13 24955475 24955743 -76917426 + L1ME1 LINE L1 5522 5842 -279 460 254 16 8 chr13 24956330 24956452 -76916717 - L2 LINE L2 -996 2318 2196 1136 181 10 20 chr13 24956469 24956673 -76916496 + MER20 DNA MER1_type 1 202 -17 496 159 103 111 chr13 24956914 24957040 -76916129 - FLAM_C SINE Alu -10 133 9 402 323 56 60 chr13 24957041 24957494 -76915675 + L2 LINE L2 2536 3271 -1 238 317 144 37 chr13 24957535 24957806 -76915363 - L2 LINE L2 -1144 2170 1871 1042 288 79 4 chr13 24957807 24958074 -76915095 - MLT2E LTR ERVL -306 322 36 1232 254 57 35 chr13 24958138 24958649 -76914520 - L1MEc LINE L1 -4564 1832 1311 596 214 23 88 chr13 24958785 24959000 -76914169 + L2 LINE L2 3113 3313 0 220 289 105 0 chr13 24959141 24959255 -76913914 - L2 LINE L2 -1503 1811 1686 408 318 76 33 chr13 24959440 24959770 -76913399 + ERVL LTR ERVL 5041 5384 -380 2037 129 3 0 chr13 24959814 24960108 -76913061 + AluSx SINE Alu 6 300 -12 719 286 143 34 chr13 24960202 24960614 -76912555 + LTR16A1 LTR ERVL 1 457 0 600 232 65 7 chr13 24961010 24961148 -76912021 + MER5A DNA MER1_type 7 152 -37 806 171 12 18 chr13 24961189 24961353 -76911816 + L1MB5 LINE L1 6012 6174 0 711 227 87 19 chr13 24961354 24961561 -76911608 + L1ME1 LINE L1 5941 6161 -5 191 256 0 0 chr13 24961592 24961635 -76911534 + MER5A DNA MER1_type 147 189 0 1487 215 106 81 chr13 24961645 24962203 -76910966 + Charlie7 DNA MER1_type 3 574 -2038 * 2247 229 53 14 chr13 24962201 24962786 -76910383 + Charlie7 DNA MER1_type 1765 2372 -240 299 334 145 22 chr13 24962815 24963126 -76910043 + L2 LINE L2 2150 2498 -816 243 325 160 15 chr13 24963661 24963867 -76909302 + L2 LINE L2 2153 2388 -926 303 67 40 40 chr13 24963996 24964071 -76909098 + (TA)n Simple_repeat Simple_repeat 2 76 0 185 296 220 31 chr13 24964814 24964973 -76908196 - L2 LINE L2 -572 2742 2554 282 326 8 31 chr13 24965042 24965171 -76907998 + GA-rich Low_complexity Low_complexity 5 130 0 239 339 77 35 chr13 24966389 24966675 -76906494 + LTR16A LTR ERVL 60 357 -93 466 100 0 0 chr13 24967294 24967354 -76905815 - Alu SINE Alu -252 61 2 22 0 0 0 chr13 24967451 24967473 -76905696 + AT_rich Low_complexity Low_complexity 1 22 0 2221 116 0 3 chr13 24967831 24968133 -76905036 - AluSx SINE Alu -11 301 1 625 293 82 77 chr13 24968883 24968909 -76904260 - L3 LINE CR1 -1 1576 1552 2133 117 13 0 chr13 24968909 24969207 -76903962 + AluSx SINE Alu 1 302 -10 625 293 82 77 chr13 24969207 24969607 -76903562 - L3 LINE CR1 -25 1552 1148 1699 190 26 21 chr13 24969669 24969981 -76903188 + L1MC4a LINE L1 5171 5486 -698 2322 80 10 3 chr13 24969981 24970281 -76902888 + AluSq SINE Alu 1 302 -11 1699 190 26 21 chr13 24970281 24970405 -76902764 + L1MC4a LINE L1 5486 5608 -576 272 306 135 40 chr13 24971256 24971377 -76901792 - MIR SINE MIR -14 248 140 1955 147 0 16 chr13 24971377 24971684 -76901485 - AluJb SINE Alu -10 302 1 272 306 135 40 chr13 24971684 24971784 -76901385 - MIR SINE MIR -122 140 6 2112 124 10 7 chr13 24971857 24972164 -76901005 + AluSx SINE Alu 1 308 -4 1712 138 11 11 chr13 24972164 24972429 -76900740 - L1MB4 LINE L1 -20 6160 5893 437 294 113 32 chr13 24972691 24972912 -76900257 - MIR SINE MIR -10 252 14 749 205 0 0 chr13 24974478 24974600 -76898569 + FRAM SINE Alu 1 122 -54 839 204 14 64 chr13 24974607 24974827 -76898342 + AluJo SINE Alu 89 297 -15 2260 92 24 0 chr13 24975289 24975581 -76897588 - AluSg SINE Alu -3 307 9 21 0 0 0 chr13 24975886 24975907 -76897262 + AT_rich Low_complexity Low_complexity 1 21 0 2172 148 8 8 chr13 24977610 24977969 -76895200 - L1MB3 LINE L1 -3 6180 5822 251 305 17 0 chr13 24978226 24978285 -76894884 - MER5A DNA MER1_type -67 122 63 249 280 195 38 chr13 24978315 24978576 -76894593 - L3 LINE CR1 -196 1381 1080 1458 218 82 62 chr13 24978634 24979134 -76894035 + MLT1E3 LTR MaLR 115 624 0 814 293 14 20 chr13 24980607 24980904 -76892265 + L1MC4a LINE L1 5643 5937 -1871 516 261 68 6 chr13 24980980 24981156 -76892013 - LTR33A LTR ERVL 0 523 337 282 225 11 67 chr13 24982084 24982173 -76890996 + LTR16C LTR ERVL 408 491 0 201 233 0 0 chr13 24982404 24982447 -76890722 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2537 83 0 0 chr13 24982720 24983033 -76890136 - AluSq SINE Alu 0 313 1 1939 141 0 0 chr13 24984129 24984399 -76888770 + AluSx SINE Alu 3 272 -40 272 25 50 0 chr13 24984411 24984451 -76888718 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 1987 164 2 97 chr13 24984624 24984875 -76888294 + MLT1A1 LTR MaLR 1 201 -164 2445 47 0 20 chr13 24984875 24985174 -76887995 - AluY SINE Alu -18 293 1 1987 164 2 97 chr13 24985174 24985325 -76887844 + MLT1A1 LTR MaLR 201 365 0 249 350 83 17 chr13 24985345 24985525 -76887644 + MIR SINE MIR 35 226 -36 224 388 84 14 chr13 24985567 24985925 -76887244 + L2 LINE L2 1896 2278 -1036 662 288 109 43 chr13 24986580 24986948 -76886221 + LTR16C LTR ERVL 100 491 0 2098 128 0 16 chr13 24987128 24987434 -76885735 - AluJb SINE Alu -11 301 1 1897 170 88 19 chr13 24989179 24989544 -76883625 + MLT1B LTR MaLR 1 390 0 2120 128 0 16 chr13 24989771 24990084 -76883085 + AluSx SINE Alu 1 308 -4 502 278 141 43 chr13 24990530 24990857 -76882312 + L2 LINE L2 2616 2974 -340 222 245 0 0 chr13 24990924 24990973 -76882196 + (TAA)n Simple_repeat Simple_repeat 2 50 0 873 307 39 14 chr13 24992756 24993193 -76879976 - L1MC4a LINE L1 -1867 5941 5494 1078 159 0 6 chr13 24993237 24993407 -76879762 - FRAM SINE Alu -7 169 1 39 0 0 0 chr13 24993670 24993709 -76879460 + AT_rich Low_complexity Low_complexity 1 39 0 848 141 0 40 chr13 24994389 24994538 -76878631 - FAM SINE Alu 0 49 1 250 197 106 0 chr13 24995842 24995908 -76877261 + LTR33A LTR ERVL 451 523 0 2255 111 3 0 chr13 24996813 24997120 -76876049 + AluSc SINE Alu 1 308 -1 583 286 25 20 chr13 24997550 24997753 -76875416 - ERVL LTR ERVL -772 4992 4789 2458 141 27 83 chr13 24997901 24998210 -76874959 + L1MA9 LINE L1 5790 6115 -197 674 238 16 0 chr13 24998210 24998332 -76874837 + FLAM_A SINE Alu 1 124 -9 2458 141 27 83 chr13 24998332 24998435 -76874734 + L1MA9 LINE L1 6115 6166 -146 1989 156 0 0 chr13 24998435 24998737 -76874432 + AluSq SINE Alu 1 302 -11 2458 141 27 83 chr13 24998737 24998877 -76874292 + L1MA9 LINE L1 6166 6312 0 329 287 153 0 chr13 24999505 24999714 -76873455 - L1MC4a LINE L1 -1532 4614 4374 381 305 6 12 chr13 24999807 24999971 -76873198 - L1MC4a LINE L1 -2106 4040 3878 2273 100 0 3 chr13 25000666 25000966 -76872203 + AluY SINE Alu 1 299 -12 2452 72 0 7 chr13 25001416 25001721 -76871448 - AluY SINE Alu -8 303 1 2035 157 103 0 chr13 25002616 25002947 -76870222 + MLT1A1 LTR MaLR 1 365 0 859 269 88 0 chr13 25003407 25003645 -76869524 + MIR SINE MIR 2 260 -2 3336 274 60 34 chr13 25003661 25004688 -76868481 - L2 LINE L2 -4 3309 2239 2400 171 44 35 chr13 25004688 25005167 -76868002 - MER66B LTR ERV1 -3 483 1 3336 274 60 34 chr13 25005167 25005626 -76867543 - L2 LINE L2 -1074 2239 1794 198 0 0 0 chr13 25006551 25006573 -76866596 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 414 0 0 0 chr13 25006572 25006618 -76866551 + (GA)n Simple_repeat Simple_repeat 1 46 0 1789 158 0 0 chr13 25006618 25006896 -76866273 - AluJb SINE Alu -34 278 1 306 309 44 97 chr13 25007407 25007727 -76865442 + L2 LINE L2 2804 3106 -166 212 305 0 0 chr13 25007783 25007842 -76865327 + L2 LINE L2 3255 3313 0 27 29 0 0 chr13 25007942 25007976 -76865193 + AT_rich Low_complexity Low_complexity 1 34 0 548 191 63 24 chr13 25009215 25009341 -76863828 + MIR SINE MIR 58 188 -74 203 337 139 10 chr13 25009566 25009656 -76863513 - MIR SINE MIR -34 228 151 1909 119 0 63 chr13 25009656 25009990 -76863179 + AluSx SINE Alu 1 315 0 203 337 139 10 chr13 25009990 25010100 -76863069 - MIR SINE MIR -111 151 1 2081 127 0 3 chr13 25010620 25010911 -76862258 - AluSx SINE Alu -22 290 1 349 254 0 0 chr13 25011020 25011087 -76862082 + MER1B DNA MER1_type 1 67 -270 14469 22 3 1 chr13 25011088 25013270 -76859899 + L1PA3 LINE L1 3722 5907 -248 1890 110 10 53 chr13 25013370 25013671 -76859498 + MER1B DNA MER1_type 52 339 0 1504 160 12 8 chr13 25013988 25014238 -76858931 - AluJo SINE Alu -53 259 9 25 31 0 0 chr13 25014248 25014280 -76858889 + AT_rich Low_complexity Low_complexity 1 32 0 364 248 30 53 chr13 25014907 25015040 -76858129 + MLT1G LTR MaLR 9 138 -457 294 95 0 0 chr13 25015040 25015082 -76858087 + (T)n Simple_repeat Simple_repeat 1 42 0 459 220 52 181 chr13 25015082 25015380 -76857789 + MLT1G LTR MaLR 100 402 -193 1035 277 82 64 chr13 25015381 25016406 -76856763 + L1MEd LINE L1 596 1750 -740 464 260 78 50 chr13 25016858 25017100 -76856069 + MLT1J LTR MaLR 3 251 -260 314 253 75 48 chr13 25017304 25017450 -76855719 + L1MEd LINE L1 2126 2275 -3854 1854 166 67 9 chr13 25017526 25017869 -76855300 - MLT1A1 LTR MaLR 0 365 3 434 296 50 13 chr13 25017904 25018063 -76855106 + MIR SINE MIR 48 212 -50 849 329 124 41 chr13 25018107 25019198 -76853971 - L2 LINE L2 0 3272 1976 1564 152 53 14 chr13 25019198 25019481 -76853688 + AluJo SINE Alu 1 294 -18 849 329 124 41 chr13 25019481 25019629 -76853540 - L2 LINE L2 -1296 1976 1842 21 0 0 0 chr13 25020384 25020405 -76852764 + GC_rich Low_complexity Low_complexity 1 21 0 301 281 6 34 chr13 25020618 25020796 -76852373 + G-rich Low_complexity Low_complexity 2 174 0 264 223 125 54 chr13 25021990 25022102 -76851067 - L2 LINE L2 -1 3312 3193 242 304 0 14 chr13 25022475 25022544 -76850625 - Charlie4 DNA MER1_type -2 1959 1892 231 229 16 16 chr13 25022567 25022628 -76850541 + (TATG)n Simple_repeat Simple_repeat 3 63 0 1395 158 89 4 chr13 25022760 25023019 -76850150 - AluJo SINE Alu -10 302 22 1518 149 0 78 chr13 25023257 25023566 -76849603 - AluJo SINE Alu -27 285 1 2177 93 37 0 chr13 25023697 25023997 -76849172 - AluY SINE Alu 0 311 1 1356 171 6 73 chr13 25024423 25024738 -76848431 + AluJo SINE Alu 6 299 -13 362 159 79 0 chr13 25027767 25027830 -76845339 + L1ME LINE L1 5454 5521 -643 590 240 49 5 chr13 25027835 25028026 -76845143 + L1MA10 LINE L1 5959 6325 -5 281 310 0 41 chr13 25028321 25028492 -76844677 + G-rich Low_complexity Low_complexity 2 165 0 253 89 0 54 chr13 25028498 25028554 -76844615 + (CGGGG)n Simple_repeat Simple_repeat 5 57 0 1918 120 0 0 chr13 25029440 25029707 -76843462 + AluSx SINE Alu 1 267 -45 827 175 30 48 chr13 25030039 25030235 -76842934 + AluJo SINE Alu 120 312 0 2469 73 6 19 chr13 25030997 25031314 -76841855 - AluSp SINE Alu 0 313 1 283 82 41 41 chr13 25031369 25031418 -76841751 - MER116 DNA Mariner -31 49 1 637 214 16 24 chr13 25032228 25032354 -76840815 + FLAM_C SINE Alu 14 138 -5 580 174 17 17 chr13 25032377 25032492 -76840677 + L1PA12 LINE L1 6054 6168 0 363 212 0 0 chr13 25032514 25032660 -76840509 + (TA)n Simple_repeat Simple_repeat 1 146 0 330 255 0 47 chr13 25032699 25032795 -76840374 - L1MC4 LINE L1 -1339 6703 6611 2162 91 3 11 chr13 25032795 25033080 -76840089 - AluSc SINE Alu -26 283 1 348 198 198 0 chr13 25033311 25033407 -76839762 - MER112 DNA MER1_type -5 255 141 498 231 0 0 chr13 25033634 25033725 -76839444 - MER58B DNA MER1_type 0 341 251 1238 183 77 31 chr13 25033727 25034050 -76839119 + L1MA9 LINE L1 5966 6303 -9 1193 171 49 53 chr13 25034062 25034325 -76838844 - MER58B DNA MER1_type -78 263 2 363 196 16 35 chr13 25035029 25035274 -76837895 + AluJo SINE Alu 1 302 0 267 340 0 20 chr13 25035947 25036047 -76837122 + CT-rich Low_complexity Low_complexity 6 103 0 24 53 0 0 chr13 25036624 25036662 -76836507 + AT_rich Low_complexity Low_complexity 1 38 0 655 248 55 30 chr13 25036788 25036990 -76836179 - L2 LINE L2 0 3313 3107 188 254 64 36 chr13 25037023 25037133 -76836036 - L2 LINE L2 -313 3000 2888 1209 170 24 10 chr13 25037349 25037555 -76835614 - MER6B DNA MER2_type -1 209 1 325 267 53 107 chr13 25037674 25037780 -76835389 + MIR SINE MIR 9 100 -162 824 239 183 56 chr13 25037780 25038173 -76834996 + MLT1J1 LTR MaLR 4 446 0 325 267 53 107 chr13 25038173 25038272 -76834897 + MIR SINE MIR 100 203 -59 27 0 0 0 chr13 25038283 25038310 -76834859 + AT_rich Low_complexity Low_complexity 1 27 0 2212 120 0 0 chr13 25038411 25038711 -76834458 - AluSx SINE Alu -12 300 1 2219 130 0 0 chr13 25039060 25039367 -76833802 - AluSx SINE Alu -5 307 1 4436 115 48 0 chr13 25040046 25040630 -76832539 - LTR9 LTR ERV1 0 612 1 688 313 117 21 chr13 25040911 25041111 -76832058 - L2 LINE L2 -4 3309 3065 273 29 0 0 chr13 25041111 25041145 -76832024 + (TG)n Simple_repeat Simple_repeat 2 35 0 688 313 117 21 chr13 25041145 25041270 -76831899 - L2 LINE L2 -248 3065 2953 312 246 0 0 chr13 25042215 25042276 -76830893 - Charlie1 DNA MER1_type -2663 98 38 435 266 30 75 chr13 25042323 25042522 -76830647 - L2 LINE L2 -311 3002 2813 257 264 0 0 chr13 25042553 25042606 -76830563 + MIR SINE MIR 209 261 -1 1354 258 79 77 chr13 25042688 25042792 -76830377 - L2 LINE L2 -1550 1764 1662 2297 89 3 0 chr13 25042792 25043084 -76830085 + AluSp SINE Alu 1 293 -20 1354 258 79 77 chr13 25043084 25043747 -76829422 - L2 LINE L2 -1652 1662 995 312 209 302 8 chr13 25044084 25044213 -76828956 + MIR SINE MIR 91 257 -5 2076 112 14 7 chr13 25045044 25045330 -76827839 - AluSx SINE Alu -24 288 1 927 144 7 20 chr13 25045354 25045507 -76827662 + L1MB3 LINE L1 5685 5835 -348 1897 197 103 7 chr13 25045648 25046055 -76827114 - MER82 DNA MER2_type -2 651 206 1001 207 5 20 chr13 25046148 25046351 -76826818 - MER82 DNA MER2_type -449 204 5 198 0 0 0 chr13 25046825 25046847 -76826322 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 27 49 0 0 chr13 25047340 25047381 -76825788 + AT_rich Low_complexity Low_complexity 1 41 0 753 236 62 36 chr13 25051341 25051566 -76821603 + MIR SINE MIR 2 232 -30 855 276 17 27 chr13 25051924 25052221 -76820948 + L2 LINE L2 3015 3308 -5 2330 164 6 3 chr13 25052501 25052866 -76820303 + MER47A DNA MER2_type 1 366 0 207 241 37 0 chr13 25052944 25052998 -76820171 - L2 LINE L2 -210 3062 3007 21 0 0 0 chr13 25053236 25053257 -76819912 + AT_rich Low_complexity Low_complexity 1 21 0 459 78 0 0 chr13 25053775 25053839 -76819330 + (TCCA)n Simple_repeat Simple_repeat 2 65 0 265 333 68 0 chr13 25054150 25054267 -76818902 + MIR SINE MIR 72 196 -66 244 348 56 0 chr13 25056982 25057071 -76816098 + L2 LINE L2 2609 2702 -612 243 269 26 13 chr13 25057288 25057366 -76815803 - LTR33A LTR ERVL 0 523 445 311 219 114 57 chr13 25057611 25057716 -76815453 - MLT2E LTR ERVL -486 142 32 246 209 105 23 chr13 25057646 25057732 -76815437 - MLT1J LTR MaLR -340 171 79 * 390 200 0 11 chr13 25057833 25057923 -76815246 - HAL1b LINE L1 -81 1267 1179 2252 88 16 16 chr13 25058045 25058352 -76814817 - AluSx SINE Alu -5 307 1 21 0 0 0 chr13 25058415 25058436 -76814733 + AT_rich Low_complexity Low_complexity 1 21 0 700 257 15 0 chr13 25058441 25058634 -76814535 - L1MA3 LINE L1 -10 6295 5963 892 219 75 12 chr13 25058844 25059242 -76813927 - HAL1b LINE L1 -579 769 322 289 187 80 13 chr13 25060055 25060130 -76813039 - MIR SINE MIR -64 144 65 1737 237 58 45 chr13 25060257 25060370 -76812799 - L1MC4a LINE L1 -692 7116 7006 2106 144 0 0 chr13 25060370 25060668 -76812501 - AluSx SINE Alu -14 298 1 1737 237 58 45 chr13 25060668 25061221 -76811948 - L1MC4a LINE L1 -802 7006 6441 25 51 0 0 chr13 25063364 25063403 -76809766 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr13 25064212 25064241 -76808928 + AT_rich Low_complexity Low_complexity 1 29 0 1914 156 10 0 chr13 25065065 25065354 -76807815 - AluSx SINE Alu -19 293 2 5037 249 67 30 chr13 25065749 25066182 -76806987 + L1MEc LINE L1 27 443 -5772 414 0 0 0 chr13 25066182 25066228 -76806941 + (CA)n Simple_repeat Simple_repeat 2 47 0 5037 249 67 30 chr13 25066228 25068514 -76804655 + L1MEc LINE L1 443 2829 -3386 2040 207 35 41 chr13 25068514 25069022 -76804147 - MLT1D LTR MaLR 0 505 1 5037 249 67 30 chr13 25069022 25069205 -76803964 + L1MEc LINE L1 2829 3004 -3211 389 181 128 0 chr13 25069223 25069317 -76803852 + HERVL40 LTR ERVL 4496 4601 -929 3065 212 56 30 chr13 25069319 25069863 -76803306 + L1MB2 LINE L1 4382 4963 -1183 1441 184 13 93 chr13 25069863 25070260 -76802909 + MLT1A1 LTR MaLR 1 365 0 3065 212 56 30 chr13 25070260 25070678 -76802491 + L1MB2 LINE L1 4963 5369 -777 1596 106 14 0 chr13 25070688 25071077 -76802092 + L1M1 LINE L1 5107 5502 -743 659 115 9 9 chr13 25071074 25071187 -76801982 - L1M1 LINE L1 -666 5634 5522 * 4279 154 24 17 chr13 25071187 25072030 -76801139 + L1MA4 LINE L1 5445 6295 -5 4195 156 23 24 chr13 25072047 25072096 -76801073 + L1MB2 LINE L1 5354 5402 -769 1982 154 0 3 chr13 25072096 25072395 -76800774 + AluJb SINE Alu 1 298 -14 4195 156 23 24 chr13 25072395 25073164 -76800005 + L1MB2 LINE L1 5402 6171 0 1825 32 5 0 chr13 25073193 25073413 -76799756 + L1PA4 LINE L1 5932 6152 -3 183 133 33 0 chr13 25074256 25074286 -76798883 + L2 LINE L2 3226 3256 -16 2296 114 0 0 chr13 25074292 25074599 -76798570 - AluSx SINE Alu -5 307 1 2898 104 32 2 chr13 25075231 25075663 -76797506 - L1PA16 LINE L1 -3 6163 5719 1117 231 114 26 chr13 25076020 25076483 -76796686 - HAL1 LINE L1 -856 1651 1148 1295 267 83 52 chr13 25076512 25077221 -76795948 - HAL1 LINE L1 -1699 808 78 25 31 0 0 chr13 25077308 25077340 -76795829 + AT_rich Low_complexity Low_complexity 1 32 0 2179 123 0 3 chr13 25077340 25077641 -76795528 + AluSx SINE Alu 1 300 -12 192 291 36 18 chr13 25078433 25078488 -76794681 - L2 LINE L2 -10 3303 3248 314 244 44 22 chr13 25078766 25078856 -76794313 - L2 LINE L2 -2 3311 3220 3646 108 25 11 chr13 25079142 25079662 -76793507 + MER1A DNA MER1_type 1 527 0 274 212 271 0 chr13 25080031 25080116 -76793053 + MIR SINE MIR 34 141 -67 1042 194 40 0 chr13 25080512 25080713 -76792456 - MER3 DNA MER1_type 0 209 1 267 31 0 0 chr13 25080911 25080943 -76792226 + (GA)n Simple_repeat Simple_repeat 1 32 0 584 248 17 84 chr13 25082768 25083006 -76790163 - MLT1L LTR MaLR -371 244 23 346 241 0 23 chr13 25083137 25083224 -76789945 - MLT1J LTR MaLR -51 460 376 583 267 54 67 chr13 25083250 25083621 -76789548 - MLT1J2 LTR MaLR -21 429 64 295 273 64 14 chr13 25083711 25083865 -76789304 - MLT1J LTR MaLR -294 194 1 294 125 0 0 chr13 25084139 25084187 -76788982 + (TATG)n Simple_repeat Simple_repeat 4 51 0 1975 175 28 38 chr13 25084208 25084608 -76788561 - MSTD LTR MaLR 0 396 1 471 227 31 23 chr13 25084934 25085062 -76788107 + L2 LINE L2 3185 3313 0 2320 110 0 7 chr13 25085136 25085446 -76787723 - AluSx SINE Alu -4 308 1 2104 120 3 7 chr13 25085900 25086199 -76786970 + AluSg SINE Alu 1 298 -12 303 290 24 93 chr13 25086413 25086661 -76786508 - L2 LINE L2 -376 2938 2708 274 388 0 20 chr13 25087609 25087707 -76785462 - MIR3 SINE MIR -103 105 10 186 338 41 35 chr13 25087736 25087881 -76785288 - L2 LINE L2 -973 2341 2196 203 309 12 24 chr13 25088191 25088275 -76784894 - L2 LINE L2 -4 3268 3186 811 255 45 10 chr13 25088344 25088544 -76784625 - MIR SINE MIR -13 249 43 270 116 0 0 chr13 25088776 25088819 -76784350 + (TG)n Simple_repeat Simple_repeat 2 44 0 223 85 43 21 chr13 25089073 25089120 -76784049 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 384 22 0 0 chr13 25089711 25089756 -76783413 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 1371 48 0 0 chr13 25090050 25090216 -76782953 + L1PA10 LINE L1 6002 6167 -1 2175 94 10 0 chr13 25090442 25090730 -76782439 + AluSx SINE Alu 1 291 -21 1066 139 12 0 chr13 25091428 25091593 -76781576 - FRAM SINE Alu -9 167 1 249 309 211 8 chr13 25092472 25092595 -76780574 + MER5B DNA MER1_type 31 178 0 413 341 30 0 chr13 25093550 25093685 -76779484 - L2 LINE L2 0 3272 3134 202 250 76 43 chr13 25093660 25093752 -76779417 - L2 LINE L2 -931 2383 2289 * 22 0 0 0 chr13 25093844 25093866 -76779303 + AT_rich Low_complexity Low_complexity 1 22 0 354 256 22 0 chr13 25094172 25094262 -76778907 - MIR SINE MIR -123 139 48 191 422 73 0 chr13 25094447 25094556 -76778613 - L2 LINE L2 -16 3256 3140 181 361 106 31 chr13 25094715 25095103 -76778066 - L2 LINE L2 -355 2959 2543 224 319 149 0 chr13 25096758 25096852 -76776317 + L2 LINE L2 3152 3259 -13 2367 65 0 0 chr13 25097078 25097369 -76775800 + AluY SINE Alu 1 291 -20 23 78 0 0 chr13 25098789 25098840 -76774329 + AT_rich Low_complexity Low_complexity 1 51 0 392 135 27 0 chr13 25098840 25098914 -76774255 - L1MB2 LINE L1 -25 6146 6071 362 74 19 0 chr13 25100209 25100263 -76772906 + (CA)n Simple_repeat Simple_repeat 2 56 0 2067 147 34 3 chr13 25100263 25100617 -76772552 + MER47A DNA MER2_type 2 366 0 2378 146 33 24 chr13 25101400 25101819 -76771350 - MSTC LTR MaLR -2 426 4 1172 225 43 7 chr13 25102547 25103001 -76770168 + L1ME LINE L1 5049 5518 -648 543 238 49 5 chr13 25103006 25103197 -76769972 + L1MA10 LINE L1 5959 6325 -5 183 139 28 0 chr13 25104173 25104209 -76768960 - MER5B DNA MER1_type 0 178 142 602 292 44 22 chr13 25104494 25104720 -76768449 - MIR SINE MIR -12 250 20 203 250 0 21 chr13 25105010 25105058 -76768111 - L2 LINE L2 -36 3277 3231 204 194 0 0 chr13 25105248 25105284 -76767885 + CT-rich Low_complexity Low_complexity 1 36 0 421 237 182 67 chr13 25105328 25105674 -76767495 - L2 LINE L2 -102 3211 2826 191 325 129 47 chr13 25105753 25106008 -76767161 + L2 LINE L2 2816 3091 -181 1047 229 47 20 chr13 25106048 25106301 -76766868 - MIR SINE MIR -1 261 2 182 37 37 0 chr13 25106950 25106977 -76766192 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr13 25107073 25107094 -76766075 + (GA)n Simple_repeat Simple_repeat 1 21 0 195 270 14 40 chr13 25107189 25107263 -76765906 + MIR SINE MIR 171 242 -20 22 35 0 0 chr13 25107439 25107468 -76765701 + AT_rich Low_complexity Low_complexity 1 29 0 197 167 24 0 chr13 25108241 25108283 -76764886 - MIR SINE MIR -124 138 96 26 30 0 0 chr13 25108977 25109010 -76764159 + AT_rich Low_complexity Low_complexity 1 33 0 206 265 0 0 chr13 25109530 25109579 -76763590 - L2 LINE L2 -1 3312 3264 731 291 111 55 chr13 25109970 25110608 -76762561 - L2 LINE L2 -1127 2187 1514 184 281 0 18 chr13 25110654 25110711 -76762458 - L2 LINE L2 -1901 1413 1358 1693 121 8 0 chr13 25111295 25111560 -76761609 - L1MA5A LINE L1 -3 6294 6028 212 143 0 20 chr13 25111764 25111775 -76761394 + (TTTTTA)n Simple_repeat Simple_repeat 5 15 -37 1568 141 121 0 chr13 25111775 25112031 -76761138 + AluJo SINE Alu 3 289 -23 212 143 0 20 chr13 25112031 25112040 -76761129 + (TTTTTA)n Simple_repeat Simple_repeat 15 23 -29 2263 97 0 10 chr13 25112040 25112338 -76760831 + AluY SINE Alu 1 295 -16 212 143 0 20 chr13 25112338 25112365 -76760804 + (TTTTTA)n Simple_repeat Simple_repeat 23 52 0 1828 160 6 13 chr13 25112565 25112877 -76760292 + AluJo SINE Alu 1 310 -2 356 201 43 95 chr13 25113341 25113500 -76759669 - MLT1H1 LTR MaLR -398 157 1 556 159 119 32 chr13 25113597 25113723 -76759446 - MLT1E3 LTR MaLR -2 622 486 949 120 15 0 chr13 25113741 25113874 -76759295 + AluSq/x SINE Alu 1 135 -178 1708 136 96 0 chr13 25113875 25114147 -76759022 + AluSx SINE Alu 2 299 -13 1972 134 31 0 chr13 25114370 25114662 -76758507 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr13 25114679 25114700 -76758469 + AT_rich Low_complexity Low_complexity 1 21 0 712 274 11 16 chr13 25115104 25115294 -76757875 + MIR SINE MIR 12 200 -62 441 305 127 20 chr13 25116501 25116698 -76756471 - MIR SINE MIR -43 219 2 749 307 100 24 chr13 25116831 25117212 -76755957 + L3 LINE CR1 1049 1458 -119 200 313 172 16 chr13 25117229 25117357 -76755812 - MIR3 SINE MIR -24 184 37 471 219 53 18 chr13 25117545 25117659 -76755510 + L2 LINE L2 3154 3271 -1 22 56 0 0 chr13 25117955 25117991 -76755178 + AT_rich Low_complexity Low_complexity 1 36 0 304 280 0 43 chr13 25118836 25118929 -76754240 - L2 LINE L2 0 3313 3225 40 0 0 0 chr13 25120046 25120086 -76753083 + AT_rich Low_complexity Low_complexity 1 40 0 18502 35 2 1 chr13 25120086 25123082 -76750087 - L1PA4 LINE L1 -2 6153 3123 573 13 0 0 chr13 25123082 25123159 -76750010 + L1PA4 LINE L1 3060 3136 -3010 2086 130 16 0 chr13 25123558 25123865 -76749304 + AluSx SINE Alu 1 312 0 614 270 57 20 chr13 25125598 25125846 -76747323 + L1MC4a LINE L1 5668 5924 -1884 216 200 22 0 chr13 25127313 25127358 -76745811 + MIR SINE MIR 85 130 -132 1528 185 66 0 chr13 25128095 25128382 -76744787 - AluJo SINE Alu -6 306 1 312 286 95 24 chr13 25128590 25128716 -76744453 + L2 LINE L2 3137 3271 -1 1410 180 129 42 chr13 25129922 25130278 -76742891 + MLT1D LTR MaLR 1 387 -118 2122 129 45 14 chr13 25130279 25130636 -76742533 - L1PB4 LINE L1 0 6156 5789 324 0 0 0 chr13 25132986 25133022 -76740147 + (CA)n Simple_repeat Simple_repeat 2 37 0 243 95 0 5 chr13 25133022 25133061 -76740108 + L1P5 LINE L1 5790 5829 -322 * 3048 105 34 16 chr13 25133059 25133553 -76739616 - L1PB4 LINE L1 -365 5791 5289 582 186 2 1 chr13 25133555 25133669 -76739500 + MLT1D LTR MaLR 251 505 0 434 204 10 0 chr13 25133831 25133934 -76739235 + (TA)n Simple_repeat Simple_repeat 1 104 0 554 224 29 46 chr13 25134182 25134356 -76738813 - LTR1B LTR ERV1 -6 820 650 1076 60 0 0 chr13 25136166 25136300 -76736869 + AluSc SINE Alu 1 134 -175 22 0 0 0 chr13 25136328 25136350 -76736819 + AT_rich Low_complexity Low_complexity 1 22 0 1454 156 27 19 chr13 25137655 25137912 -76735257 - AluJo SINE Alu -17 295 37 493 328 81 0 chr13 25138234 25138420 -76734749 + MIR SINE MIR 5 205 -57 27 0 0 0 chr13 25138771 25138798 -76734371 + AT_rich Low_complexity Low_complexity 1 27 0 598 63 0 0 chr13 25138913 25138992 -76734177 + AluS SINE Alu 1 79 -234 1917 132 3 14 chr13 25139147 25139466 -76733703 - AluSx SINE Alu 0 316 1 490 250 17 0 chr13 25140216 25140332 -76732837 - L1ME3A LINE L1 -18 6152 6035 1117 61 0 0 chr13 25142774 25142905 -76730264 + AluY SINE Alu 1 131 -180 2345 90 3 6 chr13 25142907 25143218 -76729951 + AluY SINE Alu 1 310 -1 2135 131 0 7 chr13 25143636 25143942 -76729227 + AluSq SINE Alu 1 304 -9 2089 121 0 0 chr13 25143947 25144228 -76728941 + AluSq SINE Alu 19 299 -14 7638 27 0 0 chr13 25144269 25145480 -76727689 - L1PA3 LINE L1 0 6155 4944 256 256 12 24 chr13 25146396 25146478 -76726691 + CT-rich Low_complexity Low_complexity 1 81 0 428 267 9 9 chr13 25147370 25147475 -76725694 - MER2 DNA MER2_type -240 105 1 413 238 16 97 chr13 25150262 25150447 -76722722 + L2 LINE L2 3144 3313 0 559 41 165 10 chr13 25151350 25151447 -76721722 + L1MA9 LINE L1 6184 6295 -17 852 206 0 0 chr13 25151673 25151828 -76721341 + AluJb SINE Alu 136 290 -22 186 43 0 0 chr13 25151832 25151855 -76721314 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2379 87 0 0 chr13 25152068 25152367 -76720802 + AluSx SINE Alu 1 299 -13 342 264 72 77 chr13 25152538 25152746 -76720423 - MIR SINE MIR -34 228 22 182 313 199 46 chr13 25153075 25153206 -76719963 + L2 LINE L2 3122 3272 0 2571 53 3 0 chr13 25153232 25153535 -76719634 - AluY SINE Alu -7 304 1 1856 87 28 32 chr13 25153537 25153790 -76719379 - AluSc SINE Alu -22 287 36 2147 119 0 3 chr13 25154089 25154382 -76718787 - AluSq SINE Alu -21 292 1 1902 159 3 0 chr13 25154382 25154678 -76718491 - AluJb SINE Alu -15 297 1 302 278 70 17 chr13 25155032 25155147 -76718022 - MER112 DNA MER1_type -12 248 128 339 85 0 0 chr13 25155349 25155396 -76717773 + (TG)n Simple_repeat Simple_repeat 2 48 0 915 187 0 23 chr13 25156106 25156277 -76716892 - AluJb SINE Alu -9 303 137 390 145 48 0 chr13 25156697 25156780 -76716389 - L1ME4a LINE L1 -38 6083 5997 233 271 113 18 chr13 25157288 25157427 -76715742 + MIR SINE MIR 72 262 0 1936 252 105 28 chr13 25158465 25159283 -76713886 - L1ME2 LINE L1 -19 6145 5265 1882 148 0 26 chr13 25160900 25161204 -76711965 + AluJb SINE Alu 3 298 -14 2659 36 0 3 chr13 25162402 25162711 -76710458 + AluY SINE Alu 1 308 -3 403 256 127 71 chr13 25163149 25163583 -76709586 - L1M2 LINE L1 -5453 1396 417 1922 155 30 6 chr13 25163803 25164138 -76709031 + MER2 DNA MER2_type 2 344 0 213 225 0 0 chr13 25164138 25164178 -76708991 + (TG)n Simple_repeat Simple_repeat 1 40 0 24 53 0 0 chr13 25164181 25164219 -76708950 + AT_rich Low_complexity Low_complexity 1 38 0 1969 171 0 0 chr13 25164416 25164708 -76708461 + AluJb SINE Alu 3 294 -18 361 255 92 21 chr13 25165423 25165564 -76707605 - MIR3 SINE MIR -3 205 55 1041 284 99 2 chr13 25165565 25165970 -76707199 + Tigger8 DNA MER2_type 46 489 -177 1398 204 10 31 chr13 25165987 25166281 -76706888 + AluJo SINE Alu 1 288 -14 22 0 0 0 chr13 25166283 25166305 -76706864 + AT_rich Low_complexity Low_complexity 1 22 0 375 23 0 0 chr13 25167418 25167462 -76705707 + (TG)n Simple_repeat Simple_repeat 2 45 0 2126 124 3 0 chr13 25168793 25169083 -76704086 - AluSx SINE Alu -21 291 1 21 0 0 0 chr13 25170159 25170180 -76702989 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 25170808 25170830 -76702339 + AT_rich Low_complexity Low_complexity 1 22 0 1935 145 0 3 chr13 25171087 25171376 -76701793 - AluJb SINE Alu -24 288 1 1055 131 47 11 chr13 25172735 25172926 -76700243 + L1PA16 LINE L1 5969 6166 0 696 250 52 0 chr13 25173303 25173475 -76699694 + MIR SINE MIR 54 234 -28 387 253 158 41 chr13 25173585 25173806 -76699363 - L3 LINE CR1 -11 1566 1320 556 153 7 29 chr13 25173937 25174074 -76699095 + CT-rich Low_complexity Low_complexity 2 135 0 303 283 99 76 chr13 25174076 25174299 -76698870 - L3 LINE CR1 -295 1282 1055 593 285 117 37 chr13 25174385 25174683 -76698486 - L3 LINE CR1 -737 840 519 1784 159 25 0 chr13 25175565 25175841 -76697328 - AluJo SINE Alu -29 283 1 1929 149 0 10 chr13 25176627 25176928 -76696241 + AluSg SINE Alu 1 298 -12 382 258 21 10 chr13 25176928 25177025 -76696144 - MER5A DNA MER1_type -54 135 38 4149 190 48 14 chr13 25177132 25178218 -76694951 + L1MB7 LINE L1 5043 6175 -9 2247 114 13 0 chr13 25178380 25178688 -76694481 + AluSx SINE Alu 1 312 0 1050 154 6 11 chr13 25178971 25179146 -76694023 + AluJb SINE Alu 137 310 -2 2021 115 0 4 chr13 25182392 25182697 -76690472 - AluSc SINE Alu 0 306 3 1657 207 84 22 chr13 25183017 25183481 -76689688 - Charlie4a DNA MER1_type -4 504 12 215 269 26 0 chr13 25183529 25183607 -76689562 + A-rich Low_complexity Low_complexity 5 84 0 26 50 0 0 chr13 25184495 25184535 -76688634 + AT_rich Low_complexity Low_complexity 1 40 0 349 180 279 9 chr13 25184636 25184747 -76688422 - MIR SINE MIR -74 188 48 354 206 227 14 chr13 25184811 25184952 -76688217 - MIR SINE MIR -44 218 48 983 183 0 11 chr13 25185094 25185269 -76687900 + FRAM SINE Alu 1 172 -4 21 0 0 0 chr13 25185288 25185309 -76687860 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 25185547 25185579 -76687590 + AT_rich Low_complexity Low_complexity 1 32 0 308 143 0 0 chr13 25185709 25185758 -76687411 - L2 LINE L2 0 3313 3265 26 50 0 0 chr13 25186458 25186498 -76686671 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 25187275 25187297 -76685872 + AT_rich Low_complexity Low_complexity 1 22 0 1824 176 92 36 chr13 25187884 25188362 -76684807 - MLT1D LTR MaLR 0 505 1 1232 84 11 0 chr13 25188384 25188562 -76684607 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 408 40 0 0 chr13 25188563 25188613 -76684556 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 2039 136 0 3 chr13 25188613 25188899 -76684270 - AluSx SINE Alu -27 285 1 189 0 0 0 chr13 25189104 25189125 -76684044 + (TA)n Simple_repeat Simple_repeat 1 21 0 337 228 323 6 chr13 25189397 25189564 -76683605 - MIR SINE MIR 0 262 43 37 23 0 0 chr13 25190240 25190284 -76682885 + AT_rich Low_complexity Low_complexity 1 44 0 1882 143 29 76 chr13 25191034 25191454 -76681715 - L1MC2 LINE L1 -17 6327 5928 756 160 16 0 chr13 25191575 25191700 -76681469 - AluJ SINE Alu -6 306 180 337 176 206 0 chr13 25191721 25191789 -76681380 - AluJ SINE Alu -177 125 44 298 208 115 10 chr13 25192626 25192722 -76680447 + MIR SINE MIR 87 192 -70 2433 119 5 30 chr13 25192750 25192824 -76680345 - THE1B LTR MaLR 0 364 290 2217 113 0 3 chr13 25192824 25193126 -76680043 + AluSx SINE Alu 1 301 -11 2433 119 5 30 chr13 25193126 25193422 -76679747 - THE1B LTR MaLR -74 290 3 256 221 65 39 chr13 25193466 25193543 -76679626 - L3 LINE CR1 -890 687 609 234 318 163 50 chr13 25194128 25194490 -76678679 - L2 LINE L2 -60 3212 2810 210 340 170 23 chr13 25194529 25194876 -76678293 - L2 LINE L2 -648 2666 2269 187 403 52 13 chr13 25194865 25195019 -76678150 - L3 LINE CR1 -1351 226 67 * 413 283 86 20 chr13 25195322 25195474 -76677695 + MIR SINE MIR 26 187 -75 21 36 0 0 chr13 25196890 25196918 -76676251 + AT_rich Low_complexity Low_complexity 1 28 0 1705 129 57 18 chr13 25198671 25198951 -76674218 - AluSx SINE Alu -21 291 1 23 33 0 0 chr13 25199095 25199125 -76674044 + AT_rich Low_complexity Low_complexity 1 30 0 363 327 52 20 chr13 25199129 25199160 -76674009 - MIR3 SINE MIR -25 183 154 1951 140 0 3 chr13 25199160 25199445 -76673724 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr13 25199445 25199470 -76673699 + (CAT)n Simple_repeat Simple_repeat 2 26 0 363 327 52 20 chr13 25199470 25199590 -76673579 - MIR3 SINE MIR -53 155 26 2106 134 0 7 chr13 25199911 25200217 -76672952 - AluSx SINE Alu -8 304 1 433 250 32 8 chr13 25201277 25201401 -76671768 + L1MB3 LINE L1 6048 6174 -9 28 0 0 0 chr13 25203875 25203903 -76669266 + AT_rich Low_complexity Low_complexity 1 28 0 206 219 16 0 chr13 25204204 25204268 -76668901 + (CATA)n Simple_repeat Simple_repeat 2 66 0 236 189 82 98 chr13 25204855 25204888 -76668281 - L1MA4A LINE L1 -2 6301 6269 1996 125 3 3 chr13 25204888 25205175 -76667994 + AluY SINE Alu 1 287 -24 236 189 82 98 chr13 25205175 25205192 -76667977 - L1MA4A LINE L1 -34 6269 5965 1830 182 46 36 chr13 25205192 25205583 -76667586 - L1PB4 LINE L1 -24 6132 5738 1024 307 111 28 chr13 25205588 25206249 -76666920 + L2 LINE L2 2329 3034 -238 26 30 0 0 chr13 25206303 25206336 -76666833 + AT_rich Low_complexity Low_complexity 1 33 0 1729 183 0 3 chr13 25206346 25206631 -76666538 - AluJo SINE Alu -28 284 1 2301 108 0 0 chr13 25206901 25207198 -76665971 + AluSg SINE Alu 1 297 -13 6316 78 17 25 chr13 25207312 25207982 -76665187 + L1PA10 LINE L1 5096 5756 -412 2157 117 0 10 chr13 25207982 25208280 -76664889 + AluSg SINE Alu 1 295 -15 6316 78 17 25 chr13 25208280 25208690 -76664479 + L1PA10 LINE L1 5756 6168 0 33 0 0 0 chr13 25208820 25208853 -76664316 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 25209282 25209303 -76663866 + AT_rich Low_complexity Low_complexity 1 21 0 563 125 28 28 chr13 25210010 25210154 -76663015 + GA-rich Low_complexity Low_complexity 1 144 0 252 300 0 0 chr13 25210415 25210505 -76662664 + T-rich Low_complexity Low_complexity 1 90 0 35 54 0 0 chr13 25211547 25211603 -76661566 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr13 25211954 25211986 -76661183 + AT_rich Low_complexity Low_complexity 1 32 0 435 209 0 0 chr13 25212050 25212155 -76661014 + (TA)n Simple_repeat Simple_repeat 1 105 0 2077 104 7 27 chr13 25212481 25212780 -76660389 + AluSx SINE Alu 1 293 -19 228 135 0 0 chr13 25213224 25213261 -76659908 + tRNA-Lys-AAG tRNA tRNA 3 39 -37 663 133 149 103 chr13 25214201 25214255 -76658914 - MER3 DNA MER1_type -5 204 154 1514 180 18 25 chr13 25214255 25214533 -76658636 + AluJo SINE Alu 1 276 -36 663 133 149 103 chr13 25214533 25214673 -76658496 - MER3 DNA MER1_type -55 154 1 544 215 19 0 chr13 25214681 25214788 -76658381 + MER5A DNA MER1_type 1 109 -80 21 82 0 0 chr13 25217318 25217367 -76655802 + AT_rich Low_complexity Low_complexity 1 49 0 30 0 0 0 chr13 25217828 25217858 -76655311 + AT_rich Low_complexity Low_complexity 1 30 0 1906 112 83 0 chr13 25218052 25218328 -76654841 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr13 25220569 25220599 -76652570 + AT_rich Low_complexity Low_complexity 1 30 0 244 196 36 18 chr13 25221347 25221403 -76651766 + L2 LINE L2 3007 3063 -209 220 193 175 0 chr13 25221515 25221572 -76651597 + L2 LINE L2 3242 3308 -5 2275 102 17 0 chr13 25222243 25222537 -76650632 + AluSx SINE Alu 1 299 -13 256 320 117 10 chr13 25222573 25222676 -76650493 - L2 LINE L2 -1 3271 3158 2251 120 75 35 chr13 25224340 25224765 -76648404 - L1MD1 LINE L1 0 6242 5801 230 327 97 43 chr13 25225267 25225524 -76647645 - L2 LINE L2 -626 2688 2418 186 356 69 0 chr13 25225582 25225669 -76647500 - L2 LINE L2 -1048 2266 2174 355 229 9 16 chr13 25225672 25225789 -76647380 - LTR50 LTR ERVL -236 559 367 296 237 82 0 chr13 25225882 25225979 -76647190 - LTR50 LTR ERVL -673 122 18 2860 6 0 0 chr13 25226031 25226342 -76646827 + AluYa5 SINE Alu 1 311 0 226 183 7 222 chr13 25226402 25226555 -76646614 + L3 LINE CR1 1180 1299 -278 220 333 78 0 chr13 25226594 25226684 -76646485 + L3 LINE CR1 1397 1493 -84 360 280 93 0 chr13 25226691 25226798 -76646371 + L2 LINE L2 3193 3309 -4 196 266 94 0 chr13 25226799 25226863 -76646306 + L3 LINE CR1 1495 1564 -13 2167 106 3 0 chr13 25226997 25227281 -76645888 - AluSg SINE Alu -15 295 11 803 122 0 38 chr13 25227710 25227841 -76645328 + FLAM_C SINE Alu 1 126 -7 225 128 128 0 chr13 25227915 25227962 -76645207 - MIR SINE MIR -72 190 138 4678 114 63 54 chr13 25228333 25228638 -76644531 + Tigger3b DNA MER2_type 1 302 -2726 2184 114 7 3 chr13 25228638 25228937 -76644232 - AluSx SINE Alu -10 302 3 4678 114 63 54 chr13 25228937 25229564 -76643605 + Tigger3b DNA MER2_type 302 942 -289 1912 114 0 15 chr13 25229568 25229841 -76643328 + AluSx SINE Alu 21 289 -23 226 79 79 0 chr13 25229841 25229904 -76643265 + (TA)n Simple_repeat Simple_repeat 1 68 0 267 184 46 35 chr13 25229906 25230080 -76643089 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 1593 122 52 4 chr13 25230094 25230364 -76642805 + Tigger3b DNA MER2_type 950 1232 0 259 210 32 172 chr13 25230414 25230503 -76642666 + MER112 DNA MER1_type 93 153 -107 1515 136 0 117 chr13 25230503 25230843 -76642326 + AluJb SINE Alu 4 306 0 259 210 32 172 chr13 25230843 25230909 -76642260 + MER112 DNA MER1_type 153 227 -33 976 189 6 0 chr13 25230911 25231091 -76642078 - MER58A DNA MER1_type -4 220 40 320 368 22 44 chr13 25231153 25231335 -76641834 + MER5B DNA MER1_type 1 178 0 2387 85 0 3 chr13 25231370 25231677 -76641492 - AluSc SINE Alu -3 306 1 798 150 34 0 chr13 25231706 25231853 -76641316 - L1MA6 LINE L1 -5 6295 6144 304 324 18 0 chr13 25231919 25232030 -76641139 + L1M4 LINE L1 2718 2830 -3316 1293 179 0 0 chr13 25232602 25232809 -76640360 + AluJo SINE Alu 1 207 -105 27 29 0 0 chr13 25232816 25232850 -76640319 + AT_rich Low_complexity Low_complexity 1 34 0 258 353 81 22 chr13 25233274 25233410 -76639759 + L2 LINE L2 3127 3270 -2 355 302 45 64 chr13 25233470 25233675 -76639494 - L1M4 LINE L1 -2461 3685 3485 281 242 0 0 chr13 25233708 25233774 -76639395 - L1M4 LINE L1 -3118 3028 2963 1671 120 0 0 chr13 25234161 25234378 -76638791 - AluSg/x SINE Alu -17 293 77 312 260 67 10 chr13 25234381 25234485 -76638684 - L1M4 LINE L1 -3168 2978 2869 1697 171 19 7 chr13 25234554 25234863 -76638306 + MLT1A1 LTR MaLR 1 313 -52 347 169 56 0 chr13 25234890 25234961 -76638208 + MLT1A1 LTR MaLR 291 365 0 646 181 110 0 chr13 25235217 25235372 -76637797 + MER33 DNA MER1_type 1 172 -152 504 315 40 11 chr13 25235466 25235742 -76637427 + L1ME LINE L1 5535 5818 -303 2147 112 7 16 chr13 25235754 25236058 -76637111 + AluSq SINE Alu 1 301 -12 523 154 107 0 chr13 25236394 25236543 -76636626 + MER33 DNA MER1_type 153 317 -7 21 57 0 0 chr13 25236689 25236724 -76636445 + AT_rich Low_complexity Low_complexity 1 35 0 408 304 24 19 chr13 25237037 25237244 -76635925 + L1MB8 LINE L1 4903 5110 -1036 386 314 31 0 chr13 25237988 25238147 -76635022 + L1MB8 LINE L1 5127 5290 -856 2472 218 95 13 chr13 25238170 25238917 -76634252 - L1ME1 LINE L1 -6 6160 5353 418 338 102 9 chr13 25238932 25239255 -76633914 + L1MB8 LINE L1 5295 5647 -523 2118 108 14 0 chr13 25239676 25239987 -76633182 - AluSx SINE Alu 0 315 1 29 0 0 0 chr13 25239995 25240024 -76633145 + AT_rich Low_complexity Low_complexity 1 29 0 1777 115 36 8 chr13 25240265 25240600 -76632569 + MER61C LTR ERV1 1 434 0 2802 114 20 20 chr13 25242530 25242591 -76630578 - MER83 LTR ERV1 0 448 388 2128 125 45 31 chr13 25242591 25242950 -76630219 + THE1B LTR MaLR 1 364 0 2802 114 20 20 chr13 25242950 25243336 -76629833 - MER83 LTR ERV1 -59 389 1 27 49 0 0 chr13 25245014 25245055 -76628114 + AT_rich Low_complexity Low_complexity 1 41 0 426 248 291 26 chr13 25245261 25245491 -76627678 - L3 LINE CR1 -333 1244 954 2864 133 31 0 chr13 25246872 25247325 -76625844 + LTR24 LTR ERV1 1 467 0 1426 173 100 4 chr13 25247525 25247796 -76625373 + AluJo SINE Alu 1 297 -15 197 393 0 12 chr13 25248249 25248333 -76624836 + MIR SINE MIR 54 136 -72 531 277 78 106 chr13 25248805 25249238 -76623931 - L2 LINE L2 -16 3256 2836 1546 203 103 27 chr13 25249460 25249754 -76623415 + L1MB8 LINE L1 5669 6014 -164 2240 47 27 23 chr13 25249754 25250053 -76623116 - L1PA6 LINE L1 -3 6151 5852 1546 203 103 27 chr13 25250053 25250232 -76622937 + L1MB8 LINE L1 6014 6178 0 246 366 53 15 chr13 25251009 25251140 -76622029 - MIR3 SINE MIR -36 172 37 387 338 61 19 chr13 25251503 25251716 -76621453 + L2 LINE L2 2599 2820 -494 1385 140 88 6 chr13 25251727 25252147 -76621022 + LTR19A LTR ERV1 1 486 0 364 324 99 7 chr13 25252192 25252334 -76620835 + L2 LINE L2 2898 3052 -261 198 0 0 0 chr13 25253460 25253482 -76619687 + (CGG)n Simple_repeat Simple_repeat 3 24 0 202 169 31 46 chr13 25253494 25253559 -76619610 + (CGGGG)n Simple_repeat Simple_repeat 5 68 0 27 0 0 0 chr13 25255196 25255223 -76617946 + AT_rich Low_complexity Low_complexity 1 27 0 1904 156 3 7 chr13 25255810 25256112 -76617057 + AluSx SINE Alu 1 301 -11 503 257 108 0 chr13 25257090 25257238 -76615931 + MIR SINE MIR 77 240 -22 213 352 48 9 chr13 25257257 25257362 -76615807 - L2 LINE L2 -16 3297 3189 24 0 0 0 chr13 25257643 25257667 -76615502 + AT_rich Low_complexity Low_complexity 1 24 0 1762 157 3 7 chr13 25257668 25257955 -76615214 - AluJb SINE Alu -26 286 1 1048 177 52 5 chr13 25259376 25259568 -76613601 + MER20 DNA MER1_type 19 219 0 2184 252 61 46 chr13 25259827 25260692 -76612477 - L1MEc LINE L1 -4273 2123 1233 198 118 0 0 chr13 25260692 25260726 -76612443 + (CTCA)n Simple_repeat Simple_repeat 3 36 0 2184 252 61 46 chr13 25260726 25261430 -76611739 - L1MEc LINE L1 -5163 1233 541 576 246 199 9 chr13 25261487 25261698 -76611471 - L1MEc LINE L1 -6046 350 100 204 312 148 52 chr13 25262125 25262603 -76610566 - L2 LINE L2 -656 2658 2135 198 272 132 52 chr13 25262688 25262824 -76610345 + MER5A DNA MER1_type 43 189 0 225 266 87 34 chr13 25262982 25263189 -76609980 - L1ME4a LINE L1 -4 6117 5900 433 275 201 36 chr13 25263265 25263378 -76609791 - L1MC4a LINE L1 -94 6027 5934 1796 139 77 0 chr13 25263378 25263665 -76609504 - AluSx SINE Alu -3 309 1 433 275 201 36 chr13 25263665 25263962 -76609207 - L1MC4a LINE L1 -187 5934 5597 496 318 71 38 chr13 25265397 25265636 -76607533 + MIR SINE MIR 2 248 -14 283 272 76 0 chr13 25265653 25265745 -76607424 - L1ME4a LINE L1 -458 5663 5565 284 311 88 20 chr13 25266050 25266198 -76606971 - MIR SINE MIR -46 216 59 765 208 0 0 chr13 25266621 25266751 -76606418 - FLAM_A SINE Alu -3 130 1 216 268 18 36 chr13 25266904 25266960 -76606209 + L2 LINE L2 3168 3222 -50 204 97 0 0 chr13 25267585 25267616 -76605553 + (TTTTTA)n Simple_repeat Simple_repeat 3 33 0 235 273 91 11 chr13 25268117 25268205 -76604964 - L2 LINE L2 0 3313 3219 200 333 121 0 chr13 25268398 25268530 -76604639 + L2 LINE L2 1949 2096 -1218 2349 78 0 3 chr13 25268698 25268992 -76604177 - AluY SINE Alu -18 293 1 1186 263 75 71 chr13 25269697 25270741 -76602428 - L1MC4 LINE L1 -1 8041 7006 629 266 61 76 chr13 25270782 25271124 -76602045 - L1MC4 LINE L1 -944 7098 6762 865 276 70 13 chr13 25271267 25272461 -76600708 - L1MC4a LINE L1 -12 7796 6546 2075 115 21 0 chr13 25272667 25272955 -76600214 - AluSx SINE Alu -18 294 1 438 221 0 0 chr13 25274619 25274705 -76598464 - Tigger5 DNA MER2_type -1 2322 2237 322 200 0 0 chr13 25274714 25274769 -76598400 - Tigger5 DNA MER2_type -2268 55 1 337 230 163 7 chr13 25275313 25275448 -76597721 - MIR SINE MIR -15 247 92 2200 119 10 3 chr13 25275807 25276109 -76597060 - AluSx SINE Alu -8 304 1 377 223 159 64 chr13 25276190 25276410 -76596759 - L1ME4a LINE L1 -56 6065 5825 556 261 48 0 chr13 25276519 25276684 -76596485 - L2 LINE L2 -262 3051 2879 27 62 0 0 chr13 25278257 25278305 -76594864 + AT_rich Low_complexity Low_complexity 1 48 0 216 301 87 19 chr13 25285459 25285562 -76587607 - MIR SINE MIR -91 171 62 1133 211 155 4 chr13 25285592 25285843 -76587326 + Tigger7 DNA MER2_type 2 290 -2197 581 191 0 0 chr13 25285820 25285914 -76587255 + Tigger7 DNA MER2_type 2397 2490 -1 * 2330 97 0 0 chr13 25286161 25286459 -76586710 - AluSx SINE Alu -14 298 1 1588 188 42 27 chr13 25286844 25287146 -76586023 + MER58B DNA MER1_type 1 310 -2110 1852 125 81 36 chr13 25287146 25287505 -76585664 - THE1C LTR MaLR 0 375 1 1588 188 42 27 chr13 25287505 25287538 -76585631 + MER58B DNA MER1_type 310 341 0 863 164 0 0 chr13 25288272 25288394 -76584775 - FLAM_C SINE Alu -21 122 1 678 268 85 86 chr13 25288669 25289290 -76583879 - L2 LINE L2 -43 3270 2653 23 68 0 0 chr13 25290076 25290120 -76583049 + AT_rich Low_complexity Low_complexity 1 44 0 561 288 191 50 chr13 25291213 25291675 -76581494 + L3 LINE CR1 435 961 -616 389 326 7 14 chr13 25291726 25291873 -76581296 - MER5A DNA MER1_type -37 152 7 2153 99 7 20 chr13 25291979 25292281 -76580888 + AluSx SINE Alu 1 298 -14 371 244 101 8 chr13 25292769 25292888 -76580281 - MER94 DNA DNA -1 133 4 21 0 0 0 chr13 25294917 25294938 -76578231 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 25295252 25295273 -76577896 + AT_rich Low_complexity Low_complexity 1 21 0 2177 125 0 7 chr13 25295574 25295879 -76577290 + AluSx SINE Alu 4 306 -6 24 0 0 0 chr13 25297260 25297284 -76575885 + AT_rich Low_complexity Low_complexity 1 24 0 938 240 86 1 chr13 25298021 25298256 -76574913 + MIR SINE MIR 10 253 -9 1837 148 21 0 chr13 25298295 25298586 -76574583 - AluSx SINE Alu -15 297 1 572 297 54 18 chr13 25299185 25299407 -76573762 + MIR SINE MIR 15 244 -18 642 133 91 14 chr13 25299669 25299812 -76573357 + L1MB7 LINE L1 6031 6184 0 195 42 0 0 chr13 25299966 25299990 -76573179 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 396 0 0 0 chr13 25301315 25301359 -76571810 + (TG)n Simple_repeat Simple_repeat 2 45 0 210 37 0 0 chr13 25301674 25301701 -76571468 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 346 272 18 9 chr13 25301870 25301984 -76571185 + CT-rich Low_complexity Low_complexity 6 120 0 213 195 0 0 chr13 25301990 25302031 -76571138 + (TG)n Simple_repeat Simple_repeat 2 42 0 1264 159 87 35 chr13 25305080 25305369 -76567800 - L1MC1 LINE L1 -1 6332 6029 650 266 88 39 chr13 25306028 25306333 -76566836 + MER102b DNA MER1_type 22 341 0 291 279 260 9 chr13 25306523 25306742 -76566427 + L3 LINE CR1 317 590 -987 2456 136 67 0 chr13 25306764 25307155 -76566014 - MSTA LTR MaLR -11 417 1 181 348 22 45 chr13 25308017 25308106 -76565063 - L2 LINE L2 -52 3220 3134 556 180 18 9 chr13 25308124 25308235 -76564934 - MER6 DNA MER2_type 0 865 33 190 242 111 92 chr13 25308328 25308481 -76564688 - L2 LINE L2 -248 3024 2869 752 350 81 16 chr13 25308586 25309091 -76564078 + L3 LINE CR1 1010 1547 -30 182 339 0 16 chr13 25309133 25309195 -76563974 + MIR SINE MIR 4 64 -198 350 323 101 0 chr13 25309200 25309358 -76563811 - L1MEd LINE L1 -5468 651 478 2138 106 0 3 chr13 25309651 25309944 -76563225 - AluSq SINE Alu -16 297 6 22 0 0 0 chr13 25310006 25310028 -76563141 + AT_rich Low_complexity Low_complexity 1 22 0 297 226 165 38 chr13 25310307 25310440 -76562729 + L1ME3A LINE L1 5927 6076 -94 349 280 100 14 chr13 25310534 25310783 -76562386 + L1MDa LINE L1 1551 1761 -4621 293 261 119 40 chr13 25310942 25311107 -76562062 - MIR SINE MIR -67 141 2 2885 64 11 5 chr13 25311164 25311537 -76561632 - THE1C LTR MaLR 0 375 1 312 314 71 40 chr13 25312697 25312949 -76560220 + L1MEd LINE L1 20 279 -5840 1737 134 6 111 chr13 25312960 25313004 -76560165 - MLT2D LTR ERVL 0 414 367 369 0 0 0 chr13 25313004 25313045 -76560124 + (TG)n Simple_repeat Simple_repeat 2 42 0 1737 134 6 111 chr13 25313045 25313350 -76559819 - MLT2D LTR ERVL -47 367 102 2346 108 0 0 chr13 25313350 25313655 -76559514 - AluSq SINE Alu -8 305 1 619 264 98 37 chr13 25313657 25313983 -76559186 + L1MEd LINE L1 910 1255 -4864 232 265 71 95 chr13 25314098 25314309 -76558860 + L1ME3A LINE L1 5962 6167 -3 2176 119 6 19 chr13 25314425 25314736 -76558433 + AluSx SINE Alu 1 307 -5 186 43 0 0 chr13 25314782 25314805 -76558364 + (A)n Simple_repeat Simple_repeat 1 23 0 585 236 181 23 chr13 25316270 25316529 -76556640 + L2 LINE L2 3014 3313 0 475 320 31 15 chr13 25316579 25316767 -76556402 + MIR3 SINE MIR 16 207 -1 2118 185 56 23 chr13 25317513 25317993 -76555176 + MLT1D LTR MaLR 1 496 -9 1228 173 70 38 chr13 25318070 25318383 -76554786 + MER33 DNA MER1_type 2 324 0 270 56 0 0 chr13 25319896 25319932 -76553237 + (CA)n Simple_repeat Simple_repeat 2 37 0 205 266 64 85 chr13 25320851 25320945 -76552224 + MER5A DNA MER1_type 29 131 -58 714 130 27 55 chr13 25320949 25321095 -76552074 - L1MC3 LINE L1 0 7785 7644 338 105 163 93 chr13 25321248 25321334 -76551835 - L1MC3 LINE L1 -732 7053 6995 * 439 184 28 73 chr13 25321332 25321441 -76551728 + L1MC3 LINE L1 7649 7752 -33 2337 146 221 116 chr13 25321451 25321878 -76551291 - L1MC3 LINE L1 -115 7670 7289 268 256 35 12 chr13 25321878 25321964 -76551205 - MLT1F1 LTR MaLR -443 124 37 2337 146 221 116 chr13 25321964 25322225 -76550944 - L1MC3 LINE L1 -496 7289 6816 1382 132 37 25 chr13 25322452 25322695 -76550474 + L1MA8 LINE L1 6043 6288 -3 2207 125 0 0 chr13 25323453 25323765 -76549404 + AluSx SINE Alu 1 312 0 687 274 63 30 chr13 25326599 25326836 -76546333 + MIR SINE MIR 18 262 0 210 340 10 0 chr13 25327054 25327151 -76546018 + (TATATG)n Simple_repeat Simple_repeat 1 98 0 310 313 104 10 chr13 25327151 25327343 -76545826 - L1MC4a LINE L1 -1902 5906 5697 3985 146 8 0 chr13 25328891 25329492 -76543677 - L1PA16 LINE L1 -5 6161 5556 377 285 164 6 chr13 25329912 25330077 -76543092 + MIR3 SINE MIR 12 202 -6 284 346 83 28 chr13 25330195 25330412 -76542757 + L2 LINE L2 3044 3272 0 425 258 44 63 chr13 25330612 25330771 -76542398 - MIR SINE MIR -105 157 2 1189 312 129 32 chr13 25330882 25331847 -76541322 + L2 LINE L2 1919 2977 -337 2427 178 44 36 chr13 25331857 25332358 -76540811 + MLT1D LTR MaLR 1 505 0 253 192 0 96 chr13 25332440 25332513 -76540656 + Charlie5 DNA MER1_type 10 75 -2537 346 308 68 51 chr13 25332579 25332813 -76540356 + MLT1K LTR MaLR 99 336 -252 543 255 28 49 chr13 25333002 25333249 -76539920 + MLT1K LTR MaLR 319 560 -28 3122 128 21 21 chr13 25333563 25333614 -76539555 - L1MA8 LINE L1 -1 6290 6240 2090 110 7 17 chr13 25333614 25333914 -76539255 - AluSq SINE Alu -16 297 1 3122 128 21 21 chr13 25333914 25334384 -76538785 - L1MA8 LINE L1 -50 6241 5769 22 0 0 0 chr13 25334400 25334422 -76538747 + AT_rich Low_complexity Low_complexity 1 22 0 2896 135 13 18 chr13 25334556 25335014 -76538155 - L1MA8 LINE L1 -502 5789 5334 512 221 33 33 chr13 25335073 25335195 -76537974 + L2 LINE L2 3192 3313 0 221 304 108 49 chr13 25335209 25335311 -76537858 - L2 LINE L2 -16 3256 3149 21 0 0 0 chr13 25335325 25335346 -76537823 + AT_rich Low_complexity Low_complexity 1 21 0 208 208 42 0 chr13 25336918 25336966 -76536203 + GA-rich Low_complexity Low_complexity 1 50 0 206 291 69 89 chr13 25337132 25337335 -76535834 + L2 LINE L2 3040 3238 -34 1954 160 83 4 chr13 25337708 25338122 -76535047 + MLT1D LTR MaLR 1 495 -10 543 301 71 61 chr13 25338587 25338771 -76534398 + HAL1 LINE L1 962 1143 -1364 1705 191 13 3 chr13 25338771 25339080 -76534089 + AluJo SINE Alu 1 312 0 543 301 71 61 chr13 25339080 25339496 -76533673 + HAL1 LINE L1 1143 1505 -1002 242 284 41 8 chr13 25339501 25339641 -76533528 + L1 LINE L1 3679 3823 -2323 415 309 116 10 chr13 25339985 25340192 -76532977 + MLT1H LTR MaLR 71 299 -250 781 202 0 0 chr13 25340202 25340370 -76532799 + L1P LINE L1 2739 2906 -3240 190 333 130 29 chr13 25340371 25340509 -76532660 + L2 LINE L2 2694 2845 -469 726 240 161 0 chr13 25340879 25341096 -76532073 + MIR SINE MIR 11 262 0 234 232 81 40 chr13 25341116 25341215 -76531954 + L2 LINE L2 3169 3271 -1 2081 107 4 0 chr13 25342525 25342795 -76530374 - AluSx SINE Alu -4 308 38 2348 108 0 3 chr13 25343544 25343850 -76529319 - AluSg SINE Alu -5 305 1 230 262 0 16 chr13 25344125 25344186 -76528983 - HAL1b LINE L1 -95 1253 1194 249 319 106 29 chr13 25344341 25344548 -76528621 - L1MC/D LINE L1 -2084 5724 5502 405 86 0 0 chr13 25344710 25344768 -76528401 + (GA)n Simple_repeat Simple_repeat 1 58 0 318 307 135 62 chr13 25344829 25345376 -76527793 - L1MC/D LINE L1 -1109 5037 4451 1505 251 96 61 chr13 25345440 25346037 -76527132 + MLT2E LTR ERVL 8 628 0 239 252 126 0 chr13 25346561 25346672 -76526497 - L1MC/D LINE L1 -1923 4223 4099 345 24 0 0 chr13 25346741 25346783 -76526386 + (CA)n Simple_repeat Simple_repeat 1 42 0 243 0 0 0 chr13 25346782 25346809 -76526360 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 568 350 38 25 chr13 25347557 25347923 -76525246 - L1MC/D LINE L1 -2988 3158 2788 651 170 59 2 chr13 25348150 25348293 -76524876 - L1MC3 LINE L1 0 7778 6207 1973 251 10 69 chr13 25348296 25349016 -76524153 + L1M4 LINE L1 3203 3879 -2267 1747 199 44 18 chr13 25349009 25349395 -76523774 + L1MC2 LINE L1 5947 6342 -2 * 309 177 16 0 chr13 25350353 25350415 -76522754 + Charlie1a DNA MER1_type 76 138 -1317 3973 210 121 9 chr13 25351130 25351753 -76521416 + Charlie1a DNA MER1_type 149 920 -1841 2370 146 28 25 chr13 25351753 25352116 -76521053 + THE1B LTR MaLR 1 364 0 3973 210 121 9 chr13 25352116 25352457 -76520712 + Charlie1a DNA MER1_type 920 1221 -234 831 159 23 0 chr13 25352532 25352664 -76520505 + FRAM SINE Alu 11 145 -31 676 265 25 0 chr13 25352667 25352829 -76520340 - L1MD2 LINE L1 -208 6151 5986 574 132 0 0 chr13 25352893 25352984 -76520185 - L1MA5 LINE L1 0 6300 6210 570 176 54 38 chr13 25353088 25353212 -76519957 - L1MA9 LINE L1 -24 6288 6167 1510 165 111 7 chr13 25353212 25353376 -76519793 - AluJo SINE Alu -4 308 162 333 0 0 0 chr13 25353376 25353413 -76519756 + (TG)n Simple_repeat Simple_repeat 2 38 0 1510 165 111 7 chr13 25353413 25353527 -76519642 - AluJo SINE Alu -150 162 1 570 176 54 38 chr13 25353527 25353769 -76519400 - L1MA9 LINE L1 -145 6167 5783 192 355 214 0 chr13 25353958 25354178 -76518991 + L2 LINE L2 1890 2156 -1158 2174 108 10 0 chr13 25354212 25354500 -76518669 - AluSx SINE Alu -21 291 1 437 312 60 36 chr13 25355223 25355733 -76517436 - L1MEd LINE L1 -825 1665 1026 195 270 203 0 chr13 25356606 25356680 -76516489 + L2 LINE L2 3173 3261 -11 317 243 179 7 chr13 25357642 25357782 -76515387 + MLT1K LTR MaLR 156 319 -269 491 297 61 12 chr13 25357813 25357978 -76515191 + MLT1K LTR MaLR 409 581 -7 21 0 0 0 chr13 25360022 25360043 -76513126 + AT_rich Low_complexity Low_complexity 1 21 0 690 215 0 0 chr13 25360046 25360167 -76513002 + FLAM_C SINE Alu 2 122 -21 207 69 0 0 chr13 25360179 25360208 -76512961 + (GAAAA)n Simple_repeat Simple_repeat 3 31 0 351 337 92 5 chr13 25361945 25362129 -76511040 - MIR SINE MIR -7 255 56 279 79 0 0 chr13 25363860 25363898 -76509271 + (TG)n Simple_repeat Simple_repeat 1 38 0 597 303 75 34 chr13 25364426 25364720 -76508449 + L3 LINE CR1 917 1222 -355 273 326 72 43 chr13 25364730 25364868 -76508301 - L3 LINE CR1 -7 1570 1429 207 200 0 0 chr13 25365015 25365060 -76508109 + (TA)n Simple_repeat Simple_repeat 2 46 0 559 298 12 29 chr13 25365760 25365931 -76507238 + MIR SINE MIR 15 182 -80 245 380 26 0 chr13 25365947 25366060 -76507109 - MIR SINE MIR -67 141 26 238 194 15 30 chr13 25366073 25366140 -76507029 - MER5A DNA MER1_type 0 189 124 352 231 67 39 chr13 25367529 25367633 -76505536 + MIR SINE MIR 78 184 -78 1019 175 40 0 chr13 25368135 25368312 -76504857 - MER3 DNA MER1_type -23 186 3 311 256 88 24 chr13 25368312 25368379 -76504790 - MER103 DNA DNA -78 88 14 487 250 29 43 chr13 25368657 25368711 -76504458 - MIR3 SINE MIR -3 205 152 1769 172 3 23 chr13 25368711 25369019 -76504150 - AluJb SINE Alu -10 302 1 487 250 29 43 chr13 25369019 25369104 -76504065 - MIR3 SINE MIR -56 152 68 251 246 48 119 chr13 25370021 25370147 -76503022 + MER5A DNA MER1_type 73 189 0 182 169 17 119 chr13 25370104 25370163 -76503006 - MER5A DNA MER1_type -135 54 2 * 1783 186 43 55 chr13 25370615 25370668 -76502501 + MSTD LTR MaLR 1 53 -343 2438 77 0 3 chr13 25370668 25370967 -76502202 + AluSq SINE Alu 1 298 -15 1783 186 43 55 chr13 25370967 25371312 -76501857 + MSTD LTR MaLR 53 394 -2 337 344 8 30 chr13 25371392 25371523 -76501646 + MIR SINE MIR 19 146 -62 294 262 87 32 chr13 25371553 25371679 -76501490 + L2 LINE L2 1912 2044 -1270 226 319 49 92 chr13 25371859 25372207 -76500962 + L2 LINE L2 2150 2482 -832 1401 189 129 30 chr13 25372438 25372841 -76500328 + HsTC2 DNA Tc2 1282 1900 0 853 186 0 51 chr13 25373001 25373178 -76499991 - MER5A DNA MER1_type -21 168 1 249 197 0 0 chr13 25374094 25374170 -76498999 + (CA)n Simple_repeat Simple_repeat 2 77 0 380 321 112 5 chr13 25374444 25374631 -76498538 - MIR SINE MIR -8 254 48 2433 187 72 36 chr13 25374957 25375454 -76497715 - MLT2B2 LTR ERVL 0 515 1 393 22 0 0 chr13 25376386 25376432 -76496737 + (CA)n Simple_repeat Simple_repeat 1 46 0 745 256 56 64 chr13 25377913 25378087 -76495082 + MIR SINE MIR 15 188 -74 2173 201 56 63 chr13 25378087 25378643 -76494526 - MLT2B3 LTR ERVL -2 552 1 745 256 56 64 chr13 25378643 25378718 -76494451 + MIR SINE MIR 188 262 0 1447 167 144 20 chr13 25379553 25379859 -76493310 + MER2 DNA MER2_type 1 344 0 225 0 0 0 chr13 25380150 25380175 -76492994 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2529 58 0 0 chr13 25380243 25380536 -76492633 + AluY SINE Alu 1 293 -18 2404 163 116 15 chr13 25380543 25381002 -76492167 + MLT1D LTR MaLR 1 505 0 1020 172 18 0 chr13 25381041 25381210 -76491959 - AluJb SINE Alu -11 301 130 65 0 0 0 chr13 25381210 25381275 -76491894 + AT_rich Low_complexity Low_complexity 1 65 0 846 119 16 8 chr13 25381275 25381401 -76491768 - AluJb SINE Alu -185 127 1 569 226 116 26 chr13 25382378 25382533 -76490636 + MIR SINE MIR 22 190 -72 326 324 129 4 chr13 25383539 25383780 -76489389 + L2 LINE L2 2449 2719 -595 802 293 58 8 chr13 25383848 25384090 -76489079 + MIR SINE MIR 6 259 -3 1059 201 11 0 chr13 25385087 25385276 -76487893 + MER20 DNA MER1_type 1 191 -28 1732 131 92 3 chr13 25385578 25385860 -76487309 - AluSx SINE Alu -5 307 1 963 173 56 0 chr13 25385918 25386097 -76487072 + MER53 DNA DNA 1 189 0 573 279 30 6 chr13 25386186 25386351 -76486818 + MIR SINE MIR 94 262 0 193 324 29 29 chr13 25386969 25387105 -76486064 - L2 LINE L2 -1215 2099 1964 476 253 67 47 chr13 25387274 25387574 -76485595 + L1MEd LINE L1 918 1223 -4896 1170 187 102 85 chr13 25387635 25388001 -76485168 + MLT1C LTR MaLR 1 465 -103 2581 223 18 18 chr13 25388003 25388600 -76484569 + L1ME1 LINE L1 5568 6164 -2 430 188 47 16 chr13 25388601 25388729 -76484440 + L1ME1 LINE L1 5151 5282 -864 44035 30 21 1 chr13 25388730 25394761 -76478408 + L1PA2 LINE L1 1 6155 0 2455 215 87 36 chr13 25394759 25395488 -76477681 + L1ME1 LINE L1 5296 6059 -107 * 268 200 0 0 chr13 25395490 25395540 -76477629 + L1ME3 LINE L1 6113 6162 0 253 206 0 48 chr13 25395580 25395643 -76477526 + L1MC5 LINE L1 7827 7886 -75 1745 211 98 25 chr13 25395643 25396083 -76477086 + MLT1D LTR MaLR 34 505 0 821 279 134 19 chr13 25396085 25396560 -76476609 + L1ME LINE L1 5236 5764 -398 852 282 64 23 chr13 25396580 25396977 -76476192 + L2 LINE L2 2729 3149 -164 2357 105 0 0 chr13 25396977 25397281 -76475888 + AluSx SINE Alu 1 304 -8 724 138 156 42 chr13 25397282 25397464 -76475705 + THE1C LTR MaLR 185 375 0 280 348 27 0 chr13 25397501 25397613 -76475556 + L2 LINE L2 3199 3313 0 2022 134 7 3 chr13 25398108 25398399 -76474770 - AluSx SINE Alu -20 292 1 234 91 0 0 chr13 25398865 25398898 -76474271 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 188 358 8 50 chr13 25398921 25399041 -76474128 - L2 LINE L2 -2892 422 308 5415 169 21 3 chr13 25399432 25400683 -76472486 - L1MB2 LINE L1 -1 6170 4894 1484 240 54 8 chr13 25400672 25401155 -76472014 - L1MB2 LINE L1 -2907 3239 2735 * 206 274 36 48 chr13 25401374 25401458 -76471711 - MIR3 SINE MIR -1 207 125 2527 217 46 79 chr13 25401652 25401915 -76471254 - L1MC1 LINE L1 0 6333 6071 4120 116 68 11 chr13 25401915 25402572 -76470597 - L1MB2 LINE L1 -31 6140 5446 1142 219 55 45 chr13 25402792 25403187 -76469982 + MLT1E2 LTR MaLR 117 622 -4 399 292 42 8 chr13 25403428 25403548 -76469621 + L2 LINE L2 3146 3269 -3 387 0 0 0 chr13 25403841 25403884 -76469285 + (TG)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr13 25404684 25404707 -76468462 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 395 182 0 0 chr13 25404872 25404938 -76468231 - MER69 DNA AcHobo -3 2523 2458 2710 32 3 0 chr13 25404938 25405248 -76467921 + AluY SINE Alu 1 311 0 1834 154 9 31 chr13 25405256 25405574 -76467595 + AluJo SINE Alu 1 311 -1 573 212 61 0 chr13 25405602 25405734 -76467435 - MER69 DNA AcHobo -1086 140 1 269 264 28 0 chr13 25405846 25405918 -76467251 - MIR SINE MIR -126 136 63 399 287 129 70 chr13 25406152 25406525 -76466644 + MARNA DNA Mariner 11 405 -181 421 247 230 25 chr13 25406637 25406834 -76466335 - MIR SINE MIR -20 242 3 445 289 30 15 chr13 25407645 25407780 -76465389 + MIR SINE MIR 47 183 -79 * 693 300 64 9 chr13 25407772 25408005 -76465164 + MIR SINE MIR 17 262 0 3834 129 17 5 chr13 25409157 25409747 -76463422 + L1PA15-16 LINE L1 2089 2685 -4164 354 70 0 0 chr13 25409748 25409791 -76463378 + HY3 scRNA scRNA 1 43 -58 371 102 0 0 chr13 25409791 25409840 -76463329 + L1PA15-16 LINE L1 2675 2723 -4126 2075 149 68 11 chr13 25409840 25410195 -76462974 + THE1C LTR MaLR 1 375 0 9038 126 9 54 chr13 25410195 25411685 -76461484 + THE1C-int LTR MaLR 1 1423 -157 1479 218 22 9 chr13 25411702 25412019 -76461150 + L1P LINE L1 3523 3843 -2303 1082 91 19 0 chr13 25412009 25412163 -76461006 + THE1C-int LTR MaLR 1424 1580 0 * 2408 124 47 11 chr13 25412163 25412525 -76460644 + THE1C LTR MaLR 1 375 0 8269 226 19 3 chr13 25412525 25415772 -76457397 + L1PA15-16 LINE L1 2719 6035 -814 12050 99 11 18 chr13 25415774 25417748 -76455421 - L1P3 LINE L1 -4481 1980 2 295 255 107 41 chr13 25417841 25418048 -76455121 + L1ME4a LINE L1 5831 6062 -59 2085 138 0 0 chr13 25418048 25418344 -76454825 - AluSq SINE Alu -17 296 1 295 255 107 41 chr13 25418344 25418407 -76454762 + L1ME4a LINE L1 6062 6119 -2 457 147 0 0 chr13 25419529 25419597 -76453572 + AluS SINE Alu 226 293 -19 288 102 0 0 chr13 25419621 25419670 -76453499 + (TTG)n Simple_repeat Simple_repeat 3 51 0 1678 172 18 0 chr13 25419675 25419954 -76453215 - AluSx SINE Alu -28 284 1 291 204 43 75 chr13 25420280 25420373 -76452796 - MLT1K LTR MaLR -15 573 484 934 287 111 28 chr13 25420420 25420782 -76452387 - MLT1K LTR MaLR -187 401 10 288 77 0 0 chr13 25421262 25421301 -76451868 + (TG)n Simple_repeat Simple_repeat 1 39 0 2299 146 28 2 chr13 25421392 25421818 -76451351 + L1MC3 LINE L1 7342 7778 -7 305 265 39 10 chr13 25421828 25421930 -76451239 - L1ME4a LINE L1 -76 6045 5941 316 200 14 0 chr13 25422019 25422089 -76451080 + MER58 DNA MER1_type 167 237 -104 12361 138 13 10 chr13 25422114 25423423 -76449746 - L1MA2 LINE L1 0 6304 5000 2206 110 0 16 chr13 25423423 25423731 -76449438 - AluSx SINE Alu -9 303 1 12361 138 13 10 chr13 25423731 25425736 -76447433 - L1MA2 LINE L1 -1304 5000 2983 21 0 0 0 chr13 25426193 25426214 -76446955 + AT_rich Low_complexity Low_complexity 1 21 0 4627 127 14 28 chr13 25427194 25428003 -76445166 - L1PA16 LINE L1 -47 6119 5323 5124 63 16 3 chr13 25428003 25428671 -76444498 - L1PA7 LINE L1 -6 6148 5472 12719 92 1 1 chr13 25428679 25430546 -76442623 - L1PA7 LINE L1 -1316 4830 2963 879 27 18 0 chr13 25430586 25430696 -76442473 + L1PA4 LINE L1 6044 6155 0 480 194 10 0 chr13 25430698 25430796 -76442373 - HAL1 LINE L1 -866 1641 1543 313 311 31 19 chr13 25431269 25431430 -76441739 - MLT1H LTR MaLR -270 279 117 198 0 0 0 chr13 25431671 25431693 -76441476 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 850 96 45 39 chr13 25431831 25431987 -76441182 + L1PA6 LINE L1 5996 6152 -2 23 0 0 0 chr13 25431987 25432010 -76441159 + AT_rich Low_complexity Low_complexity 1 23 0 210 247 216 21 chr13 25432104 25432201 -76440968 + MIR SINE MIR 31 146 -116 264 248 20 20 chr13 25432933 25433034 -76440135 + CT-rich Low_complexity Low_complexity 3 103 0 21 0 0 0 chr13 25433045 25433066 -76440103 + AT_rich Low_complexity Low_complexity 1 21 0 1516 209 0 22 chr13 25434953 25435264 -76437905 + AluJo SINE Alu 5 308 -4 203 293 53 0 chr13 25435373 25435448 -76437721 - MIR SINE MIR -26 236 158 * 257 303 40 0 chr13 25435447 25435523 -76437646 + L2 LINE L2 2930 3008 -264 245 278 0 14 chr13 25435833 25435905 -76437264 + CT-rich Low_complexity Low_complexity 2 72 0 266 267 17 0 chr13 25435908 25435968 -76437201 + MIR SINE MIR 1 61 -201 2270 108 0 0 chr13 25436710 25437005 -76436164 + AluSx SINE Alu 1 295 -17 228 273 0 0 chr13 25438151 25438206 -76434963 - L2 LINE L2 -13 3300 3246 954 187 68 90 chr13 25438293 25438671 -76434498 - MLT1A1 LTR MaLR 0 365 1 204 267 0 0 chr13 25439297 25439342 -76433827 + (TTA)n Simple_repeat Simple_repeat 2 46 0 298 251 178 52 chr13 25440172 25440363 -76432806 + MLT1J LTR MaLR 30 244 -267 223 246 0 46 chr13 25440855 25440920 -76432249 + CT-rich Low_complexity Low_complexity 1 62 0 1402 193 71 7 chr13 25440929 25441209 -76431960 - AluJo SINE Alu -14 298 1 872 184 63 29 chr13 25443103 25443310 -76429859 + MER20 DNA MER1_type 6 219 0 2267 143 34 5 chr13 25443548 25443927 -76429242 - MLT1B LTR MaLR 0 390 1 268 139 0 0 chr13 25444052 25444095 -76429074 + L1MA8 LINE L1 6044 6086 -205 507 232 7 7 chr13 25444310 25444448 -76428721 - L1ME3A LINE L1 -13 6157 6020 2327 142 117 17 chr13 25445140 25445732 -76427437 + LTR12 LTR ERV1 1 2212 -226 2036 224 74 60 chr13 25446593 25447303 -76425866 - L1MC5 LINE L1 -52 7909 7181 2037 236 73 21 chr13 25447303 25447867 -76425302 - MLT1E LTR MaLR 0 593 1 2036 224 74 60 chr13 25447867 25448087 -76425082 - L1MC5 LINE L1 -780 7181 6966 247 273 11 23 chr13 25448346 25448434 -76424735 - L1ME3A LINE L1 -541 5643 5557 1351 130 174 105 chr13 25448747 25448836 -76424333 - MSTB LTR MaLR 0 426 345 8634 26 0 0 chr13 25448836 25450618 -76422551 - L1PA2 LINE L1 -2 6153 4369 1351 130 174 105 chr13 25450618 25450919 -76422250 - MSTB LTR MaLR -81 345 9 238 303 126 42 chr13 25451013 25451132 -76422037 - MIR3 SINE MIR -46 162 34 386 321 58 32 chr13 25451329 25451519 -76421650 - MIR SINE MIR -49 213 19 486 0 0 0 chr13 25451519 25451573 -76421596 + (CA)n Simple_repeat Simple_repeat 2 55 0 334 119 0 22 chr13 25452476 25452545 -76420624 - Alu SINE Alu -248 51 1 417 253 18 148 chr13 25452844 25453073 -76420096 + MIR SINE MIR 47 245 -17 267 309 64 36 chr13 25454918 25455028 -76418141 + L2 LINE L2 3200 3312 -1 5088 80 41 25 chr13 25455237 25455964 -76417205 + SVA Other Other 644 1382 -4 25 0 0 0 chr13 25455964 25455989 -76417180 + AT_rich Low_complexity Low_complexity 1 25 0 183 245 0 38 chr13 25456202 25456255 -76416914 + MIR3 SINE MIR 144 194 -14 23 0 0 0 chr13 25456329 25456352 -76416817 + AT_rich Low_complexity Low_complexity 1 23 0 242 204 20 0 chr13 25457406 25457455 -76415714 + MIR SINE MIR 96 145 -117 353 265 87 111 chr13 25457458 25457907 -76415262 - L2 LINE L2 0 3272 2835 371 287 237 14 chr13 25458293 25458761 -76414408 - L2 LINE L2 -242 3030 2458 391 210 37 9 chr13 25459426 25459540 -76413629 + L1ME4a LINE L1 1232 6096 -1 2194 83 14 0 chr13 25459817 25460105 -76413064 + AluY SINE Alu 1 292 -19 244 133 33 44 chr13 25460200 25460290 -76412879 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 2450 50 13 13 chr13 25460449 25460750 -76412419 - AluY SINE Alu -10 301 1 371 298 96 11 chr13 25460776 25460964 -76412205 + L3 LINE CR1 828 1031 -546 1852 161 7 13 chr13 25460992 25461302 -76411867 + AluSx SINE Alu 1 308 -4 27 49 0 0 chr13 25461354 25461395 -76411774 + AT_rich Low_complexity Low_complexity 1 41 0 918 272 110 43 chr13 25461483 25461798 -76411371 - L1MC4a LINE L1 -1854 5954 5662 2505 57 0 0 chr13 25461798 25462095 -76411074 - AluY SINE Alu -14 297 1 918 272 110 43 chr13 25462095 25462386 -76410783 - L1MC4a LINE L1 -2146 5662 5307 208 216 59 0 chr13 25462400 25462451 -76410718 + L2 LINE L2 2769 2822 -492 651 315 4 9 chr13 25462962 25463194 -76409975 + MLT1J LTR MaLR 99 329 -182 384 289 139 29 chr13 25463292 25463565 -76409604 - MLT1H LTR MaLR -15 534 232 768 212 26 78 chr13 25463703 25463934 -76409235 - MER20 DNA MER1_type 0 219 1 414 249 56 63 chr13 25464326 25464646 -76408523 + MLT1H LTR MaLR 71 384 -25 2348 105 0 0 chr13 25464892 25465196 -76407973 + AluSx SINE Alu 1 304 -8 490 310 26 37 chr13 25465335 25465604 -76407565 - L1ME4a LINE L1 -234 5887 5694 22 35 0 0 chr13 25466164 25466193 -76406976 + AT_rich Low_complexity Low_complexity 1 29 0 185 341 0 0 chr13 25467166 25467210 -76405959 - L2 LINE L2 -92 3180 3137 306 276 0 0 chr13 25467382 25467458 -76405711 + L2 LINE L2 3237 3312 -1 245 288 106 42 chr13 25467469 25467705 -76405464 - L2 LINE L2 -367 2947 2697 2532 183 77 20 chr13 25467718 25468302 -76404867 + L1M4 LINE L1 4668 5284 -862 980 150 20 7 chr13 25468302 25468455 -76404714 + FRAM SINE Alu 1 150 -26 933 226 25 5 chr13 25468601 25468805 -76404364 + L1MB2 LINE L1 4670 4877 -1269 4861 159 17 27 chr13 25468819 25469741 -76403428 + L1MB2 LINE L1 5255 6167 -4 1330 186 36 112 chr13 25470430 25470823 -76402346 - MLT1A1 LTR MaLR -2 363 1 203 250 0 33 chr13 25470989 25471049 -76402120 + GA-rich Low_complexity Low_complexity 1 58 0 875 180 67 6 chr13 25471078 25471256 -76401913 - MER5A DNA MER1_type 0 189 1 831 206 23 23 chr13 25471267 25471442 -76401727 + MER5B DNA MER1_type 2 176 -2 379 179 26 0 chr13 25471475 25471553 -76401616 + MER5A DNA MER1_type 25 104 -85 1415 170 64 18 chr13 25471864 25471994 -76401175 + AluJo SINE Alu 1 124 -188 2400 79 0 31 chr13 25471994 25472311 -76400858 + AluSx SINE Alu 1 307 -5 1415 170 64 18 chr13 25472311 25472462 -76400707 + AluJo SINE Alu 124 295 -17 200 128 0 26 chr13 25472761 25472800 -76400369 + (CAA)n Simple_repeat Simple_repeat 1 38 0 933 237 5 14 chr13 25472852 25473067 -76400102 + MIR SINE MIR 1 213 -49 630 154 9 9 chr13 25473148 25473258 -76399911 - FLAM_A SINE Alu -4 138 29 1518 222 221 56 chr13 25473984 25474545 -76398624 + L2 LINE L2 2053 2520 -793 2257 115 0 3 chr13 25474545 25474850 -76398319 - AluSq SINE Alu -8 305 2 1518 222 221 56 chr13 25474850 25475362 -76397807 + L2 LINE L2 2520 3313 0 2280 93 0 13 chr13 25475926 25476227 -76396942 + AluSg SINE Alu 1 297 -13 641 244 86 25 chr13 25476702 25476899 -76396270 - MIR SINE MIR -9 253 45 643 206 202 31 chr13 25477155 25477378 -76395791 - MIR SINE MIR 0 262 2 312 137 0 0 chr13 25477427 25477478 -76395691 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 0 0 0 chr13 25478604 25478646 -76394523 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1109 309 97 27 chr13 25478728 25479331 -76393838 + L2 LINE L2 2404 3044 -269 648 246 14 0 chr13 25479583 25479721 -76393448 - MER97c DNA MER1_type? -944 146 7 922 230 65 103 chr13 25479925 25480191 -76392978 - MLT1I LTR MaLR 0 409 163 7897 35 1 0 chr13 25480191 25481080 -76392089 + L1PA4 LINE L1 5266 6155 0 922 230 65 103 chr13 25481080 25481230 -76391939 - MLT1I LTR MaLR -246 163 9 361 200 279 48 chr13 25481452 25481617 -76391552 + MER105 DNA DNA 1 203 -1 356 346 87 22 chr13 25481864 25482176 -76390993 + L2 LINE L2 2565 2896 -418 389 281 65 54 chr13 25482197 25482457 -76390712 - HAL1 LINE L1 -5 2502 2240 1033 180 0 6 chr13 25482516 25482688 -76390481 + AluJb SINE Alu 129 299 -13 239 256 64 0 chr13 25482708 25482786 -76390383 - HAL1 LINE L1 -366 2141 2059 700 281 181 16 chr13 25482867 25483066 -76390103 - HAL1 LINE L1 -592 1915 1750 17051 99 6 28 chr13 25483066 25484179 -76388990 - L1PA7 LINE L1 -4 6150 5014 2312 100 0 0 chr13 25484179 25484480 -76388689 - AluY SINE Alu -10 301 1 17051 99 6 28 chr13 25484480 25486607 -76386562 - L1PA7 LINE L1 -1140 5014 2963 700 281 181 16 chr13 25486607 25486727 -76386442 - HAL1 LINE L1 -757 1750 1543 352 311 31 19 chr13 25487201 25487362 -76385807 - MLT1H LTR MaLR -270 279 117 303 28 0 0 chr13 25487807 25487843 -76385326 + (CAA)n Simple_repeat Simple_repeat 2 37 0 407 234 76 57 chr13 25487886 25488044 -76385125 + MIR SINE MIR 31 191 -71 264 273 0 40 chr13 25488734 25488833 -76384336 + CT-rich Low_complexity Low_complexity 3 97 0 1562 198 0 29 chr13 25490757 25491070 -76382099 + AluJo SINE Alu 5 308 -4 203 293 53 0 chr13 25491182 25491257 -76381912 - MIR SINE MIR -26 236 158 * 265 349 161 20 chr13 25491256 25491554 -76381615 + L2 LINE L2 2930 3269 -3 245 278 0 14 chr13 25491652 25491724 -76381445 + CT-rich Low_complexity Low_complexity 2 72 0 265 267 17 0 chr13 25491727 25491787 -76381382 + MIR SINE MIR 1 61 -201 2084 138 0 0 chr13 25492529 25492827 -76380342 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr13 25494242 25494262 -76378907 + (A)n Simple_repeat Simple_repeat 1 20 0 346 255 93 47 chr13 25494274 25494339 -76378830 - L1ME4a LINE L1 0 6121 6060 1888 134 79 0 chr13 25494339 25494629 -76378540 + AluSq SINE Alu 1 313 0 346 255 93 47 chr13 25494629 25494841 -76378328 - L1ME4a LINE L1 -61 6060 5831 4767 117 3 18 chr13 25494935 25495644 -76377525 + L1P3 LINE L1 3 700 -5761 31707 114 10 57 chr13 25495934 25502388 -76370781 + L1PA7 LINE L1 12 6151 -3 265 219 14 14 chr13 25502382 25502455 -76370714 - L1ME4a LINE L1 -406 5715 5643 * 23 0 0 0 chr13 25502517 25502540 -76370629 + AT_rich Low_complexity Low_complexity 1 23 0 554 255 76 6 chr13 25505454 25505611 -76367558 + MER5B DNA MER1_type 5 172 -6 998 282 32 51 chr13 25505814 25506286 -76366883 - LTR16B LTR ERVL -1 463 1 536 301 30 12 chr13 25506716 25506882 -76366287 + MER5B DNA MER1_type 2 170 -8 1925 206 61 47 chr13 25507678 25507855 -76365314 + MLT1D LTR MaLR 1 174 -331 2358 94 7 0 chr13 25507855 25508162 -76365007 + AluSp SINE Alu 1 309 -4 1925 206 61 47 chr13 25508162 25508475 -76364694 + MLT1D LTR MaLR 174 498 -7 5073 214 63 68 chr13 25508559 25508931 -76364238 - L1MC4a LINE L1 0 7808 7436 2422 93 0 0 chr13 25508931 25509242 -76363927 - AluY SINE Alu 0 311 1 5073 214 63 68 chr13 25509242 25510414 -76362755 - L1MC4a LINE L1 -372 7436 6272 201 317 81 56 chr13 25511438 25511599 -76361570 - MIR SINE MIR -6 256 92 23 0 0 0 chr13 25511752 25511775 -76361394 + AT_rich Low_complexity Low_complexity 1 23 0 1258 197 38 4 chr13 25512240 25512504 -76360665 - L1MA4 LINE L1 -6 6294 6022 22 35 0 0 chr13 25513176 25513205 -76359964 + AT_rich Low_complexity Low_complexity 1 29 0 944 293 56 68 chr13 25514647 25515176 -76357993 + MLT1K LTR MaLR 11 534 -54 2445 130 28 0 chr13 25515176 25515530 -76357639 - THE1B LTR MaLR 0 364 1 944 293 56 68 chr13 25515530 25515573 -76357596 + MLT1K LTR MaLR 534 576 -12 633 312 55 13 chr13 25517596 25517833 -76355336 + MIR SINE MIR 6 252 -10 2296 144 18 73 chr13 25518242 25518680 -76354489 + MLT2D LTR ERVL 1 414 0 1108 188 47 24 chr13 25520512 25520725 -76352444 - MER20 DNA MER1_type -1 218 1 483 303 108 28 chr13 25520916 25520969 -76352200 + L2 LINE L2 2605 2652 -620 2309 140 6 105 chr13 25520969 25521447 -76351722 + MSTB1 LTR MaLR 2 432 0 483 303 108 28 chr13 25521447 25521832 -76351337 + L2 LINE L2 2652 3079 -193 2083 106 22 0 chr13 25522170 25522468 -76350701 - AluSg SINE Alu 0 304 1 321 269 39 0 chr13 25523521 25523599 -76349570 + L2 LINE L2 3149 3229 -43 348 268 9 18 chr13 25524811 25524923 -76348246 - HsTC2 DNA Tc2 0 1898 1788 554 216 15 30 chr13 25524964 25525098 -76348071 - FLAM_A SINE Alu -1 132 1 475 275 21 7 chr13 25525993 25526135 -76347034 - MIR SINE MIR 0 262 119 1691 153 162 86 chr13 25526135 25526566 -76346603 + MLT1C LTR MaLR 1 464 -3 467 294 34 67 chr13 25528250 25528488 -76344681 + MIR SINE MIR 33 262 0 1551 178 7 21 chr13 25529576 25529863 -76343306 + AluSx SINE Alu 28 310 -2 749 11 11 0 chr13 25530022 25530112 -76343057 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1803 168 26 16 chr13 25531269 25531578 -76341591 + AluJo SINE Alu 1 312 0 751 143 77 50 chr13 25531606 25531788 -76341381 - MER5A DNA MER1_type 0 189 3 207 69 0 0 chr13 25532054 25532083 -76341086 + (A)n Simple_repeat Simple_repeat 1 29 0 374 253 68 56 chr13 25532440 25532602 -76340567 - MER5B DNA MER1_type -14 164 1 242 296 200 9 chr13 25532795 25532910 -76340259 - MIR SINE MIR -106 156 20 23 0 0 29 chr13 25535022 25535033 -76338136 + AT_rich Low_complexity Low_complexity 1 11 -22 1919 138 3 14 chr13 25535033 25535330 -76337839 + AluSx SINE Alu 1 294 -18 23 0 0 29 chr13 25535330 25535352 -76337817 + AT_rich Low_complexity Low_complexity 11 33 0 442 327 108 23 chr13 25535825 25536131 -76337038 + L2 LINE L2 2494 2825 -489 2386 222 66 85 chr13 25536136 25536372 -76336797 + MER21B LTR ERV1 1 240 -623 2112 131 40 37 chr13 25536372 25536746 -76336423 - THE1C LTR MaLR 0 375 1 2386 222 66 85 chr13 25536746 25537324 -76335845 + MER21B LTR ERV1 240 800 -63 370 323 92 51 chr13 25539237 25539553 -76333616 - L2 LINE L2 -15 3257 2929 252 86 0 0 chr13 25539553 25539588 -76333581 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 716 245 126 39 chr13 25542004 25542314 -76330855 + MLT1J LTR MaLR 3 339 -172 261 263 72 26 chr13 25543223 25543375 -76329794 - Charlie7 DNA MER1_type -3 2609 2451 480 284 111 20 chr13 25545435 25545704 -76327465 - L1 LINE L1 -1818 4328 4034 283 202 48 0 chr13 25545831 25545915 -76327254 - L1 LINE L1 -2196 3950 3863 1651 169 6 32 chr13 25545977 25546291 -76326878 - AluJb SINE Alu -6 306 1 465 203 32 96 chr13 25546824 25547011 -76326158 + MER104 DNA MER2_type 3 177 -3 367 319 25 0 chr13 25548338 25548457 -76324712 + L2 LINE L2 3142 3263 -9 544 270 49 5 chr13 25548960 25549145 -76324024 + L1ME LINE L1 5589 5781 -340 207 213 0 21 chr13 25549608 25549655 -76323514 + (CATATA)n Simple_repeat Simple_repeat 4 49 0 23 0 0 0 chr13 25549713 25549736 -76323433 + AT_rich Low_complexity Low_complexity 1 23 0 186 62 0 62 chr13 25549768 25549816 -76323353 + (TTAAA)n Simple_repeat Simple_repeat 1 45 0 234 91 0 0 chr13 25550133 25550166 -76323003 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 1916 155 12 108 chr13 25551235 25551662 -76321507 - MLT1B LTR MaLR 0 390 5 198 118 29 0 chr13 25552615 25552649 -76320520 - L2 LINE L2 -16 3297 3263 616 178 12 0 chr13 25552733 25552848 -76320321 - MER3 DNA MER1_type -100 109 7 302 348 50 7 chr13 25552958 25553099 -76320070 - L3 LINE CR1 -14 1563 1417 12193 29 1 0 chr13 25553371 25554805 -76318364 - L1PA3 LINE L1 -1868 4278 2844 9904 25 0 0 chr13 25554805 25556675 -76316494 + L1PA3 LINE L1 4282 6155 0 2187 105 34 0 chr13 25556896 25557191 -76315978 - AluSx SINE Alu -7 305 1 243 319 0 0 chr13 25557718 25557787 -76315382 - MIR SINE MIR -31 231 163 367 239 171 8 chr13 25557861 25557978 -76315191 - MIR SINE MIR -122 140 5 4010 121 55 63 chr13 25558161 25559432 -76313737 + pTR5 LTR ERV1 281 2295 -143 323 330 52 88 chr13 25559668 25559851 -76313318 - L2 LINE L2 0 3272 3105 1764 169 43 10 chr13 25559851 25560152 -76313017 + AluSx SINE Alu 1 311 -1 323 330 52 88 chr13 25560152 25560298 -76312871 - L2 LINE L2 -167 3105 2955 783 324 76 56 chr13 25560331 25560978 -76312191 + L2 LINE L2 2377 3060 -253 2195 129 3 3 chr13 25561951 25562262 -76310907 + AluSq SINE Alu 1 311 -2 758 282 63 32 chr13 25562311 25562786 -76310383 - L1MDa LINE L1 -4792 1748 1259 541 303 32 83 chr13 25562948 25563181 -76309988 - L1MDa LINE L1 -5253 1468 1260 2123 112 10 3 chr13 25563181 25563477 -76309692 + AluSp SINE Alu 1 298 -15 541 303 32 83 chr13 25563477 25563616 -76309553 - L1MDa LINE L1 -5461 1260 1115 180 0 0 0 chr13 25564106 25564126 -76309043 + (TA)n Simple_repeat Simple_repeat 2 21 0 443 333 17 0 chr13 25564324 25564444 -76308725 + L2 LINE L2 3151 3272 0 252 314 112 37 chr13 25564597 25564785 -76308384 - L2 LINE L2 -525 2789 2588 1862 156 7 0 chr13 25565628 25565942 -76307227 + AluSx SINE Alu 1 316 0 4019 177 49 42 chr13 25566454 25567328 -76305841 + MER49 LTR ERV1 33 912 -11 435 197 114 30 chr13 25567839 25567971 -76305198 - LTR33 LTR ERVL -9 512 370 1163 159 72 120 chr13 25567986 25568182 -76304987 + MLT1D LTR MaLR 1 176 -329 2574 71 0 0 chr13 25568182 25568492 -76304677 + AluY SINE Alu 1 310 -1 1163 159 72 120 chr13 25568492 25568628 -76304541 + MLT1D LTR MaLR 176 317 -188 980 234 122 32 chr13 25568626 25569036 -76304133 + Charlie1b DNA MER1_type 46 492 -31 * 333 314 21 68 chr13 25569070 25569261 -76303908 + MLT1K LTR MaLR 3 184 -404 283 203 29 29 chr13 25569242 25569311 -76303858 + MLT1K LTR MaLR 453 521 -67 * 23 68 0 0 chr13 25569531 25569575 -76303594 + AT_rich Low_complexity Low_complexity 1 44 0 267 260 173 40 chr13 25569849 25570022 -76303147 + L2 LINE L2 3117 3312 -1 239 279 54 39 chr13 25570076 25570205 -76302964 - L2 LINE L2 -188 3084 2954 1824 180 0 6 chr13 25570273 25570584 -76302585 - AluJo SINE Alu -3 309 1 313 290 19 43 chr13 25570807 25570969 -76302200 - L2 LINE L2 -5 3308 3151 245 291 67 15 chr13 25570972 25571106 -76302063 + L1MDa LINE L1 1751 1891 -4649 285 151 0 0 chr13 25571380 25571433 -76301736 + GA-rich Low_complexity Low_complexity 3 55 0 1811 169 20 48 chr13 25571804 25572158 -76301011 + MER2 DNA MER2_type 1 344 0 619 241 79 15 chr13 25575513 25575716 -76297453 + L1MC5 LINE L1 7696 7911 -50 180 111 0 0 chr13 25576308 25576335 -76296834 + (TG)n Simple_repeat Simple_repeat 2 28 0 396 277 21 0 chr13 25576776 25576870 -76296299 + L2 LINE L2 3137 3232 -40 186 245 11 117 chr13 25577397 25577411 -76295758 + L3 LINE CR1 1415 1418 -159 206 250 152 36 chr13 25577411 25577523 -76295646 - MER5B DNA MER1_type 0 178 54 344 278 192 0 chr13 25577724 25577875 -76295294 - MER5A DNA MER1_type -6 183 4 1908 124 0 70 chr13 25577888 25578218 -76294951 + AluJo SINE Alu 4 310 -2 216 0 0 0 chr13 25578479 25578503 -76294666 + (T)n Simple_repeat Simple_repeat 1 24 0 1840 139 3 21 chr13 25580778 25581066 -76292103 - AluSx SINE Alu -2 310 28 322 250 58 0 chr13 25581090 25581194 -76291975 - MIR SINE MIR -31 231 122 23 0 0 0 chr13 25581938 25581961 -76291208 + AT_rich Low_complexity Low_complexity 1 23 0 248 346 85 13 chr13 25583053 25583206 -76289963 - MIR SINE MIR -78 184 21 538 259 53 12 chr13 25583331 25583501 -76289668 + MIR SINE MIR 19 195 -67 2301 103 3 3 chr13 25585995 25586305 -76286864 - AluSg SINE Alu 0 310 1 330 111 0 19 chr13 25589546 25589600 -76283569 + L1PA2 LINE L1 6098 6150 -5 3780 134 31 5 chr13 25590162 25590750 -76282419 - LTR26 LTR ERV1 0 603 1 303 269 134 0 chr13 25590785 25590904 -76282265 - L2 LINE L2 0 3272 3138 2203 121 0 3 chr13 25591267 25591572 -76281597 + AluSg SINE Alu 1 304 -6 1085 182 61 108 chr13 25593629 25594024 -76279145 - MLT1C LTR MaLR 0 467 103 417 39 0 0 chr13 25594371 25594422 -76278747 + (CA)n Simple_repeat Simple_repeat 2 52 0 2351 165 40 2 chr13 25595052 25595457 -76277712 - MLT2B1 LTR ERVL -98 422 3 901 207 107 25 chr13 25596231 25596490 -76276679 - MLT1C LTR MaLR 0 467 182 2048 137 3 13 chr13 25596490 25596803 -76276366 - AluSx SINE Alu -2 310 1 901 207 107 25 chr13 25596803 25596823 -76276346 - MLT1C LTR MaLR -285 182 165 2057 164 40 5 chr13 25596824 25597197 -76275972 + MER50 LTR ERV1 1 386 -348 1187 147 21 11 chr13 25597486 25597676 -76275493 + MER50 LTR ERV1 382 573 -161 1392 49 55 11 chr13 25597676 25597859 -76275310 - AluYa5 SINE Alu -16 295 105 1056 93 21 0 chr13 25597859 25597999 -76275170 + MER50 LTR ERV1 569 711 -23 547 239 31 44 chr13 25597997 25598156 -76275013 - MLT1C LTR MaLR -326 179 23 * 292 21 0 21 chr13 25598841 25598889 -76274280 - AluSp/q SINE Alu 0 303 257 204 125 0 0 chr13 25599156 25599188 -76273981 + (TG)n Simple_repeat Simple_repeat 2 33 0 1975 139 0 17 chr13 25599719 25600033 -76273136 + AluSx SINE Alu 1 309 0 3200 120 52 19 chr13 25600262 25600802 -76272367 + MER34B LTR ERV1 1 558 -7 2089 100 4 11 chr13 25601096 25601401 -76271768 - AluSx SINE Alu 0 309 7 405 0 0 0 chr13 25601413 25601458 -76271711 + (TG)n Simple_repeat Simple_repeat 2 46 0 3438 98 6 2 chr13 25603394 25603899 -76269270 + L1PB2 LINE L1 5666 6172 0 216 97 0 0 chr13 25604017 25604048 -76269121 + (TG)n Simple_repeat Simple_repeat 2 32 0 438 266 135 73 chr13 25604065 25604464 -76268705 - MLT1L LTR MaLR -1 614 191 818 213 46 37 chr13 25605847 25606063 -76267106 - MER20 DNA MER1_type -1 218 1 355 286 126 34 chr13 25606254 25606307 -76266862 + L2 LINE L2 2605 2652 -662 2154 140 6 105 chr13 25606307 25606785 -76266384 + MSTB1 LTR MaLR 2 432 0 355 286 126 34 chr13 25606785 25607056 -76266113 + L2 LINE L2 2652 2959 -355 1817 129 84 19 chr13 25607962 25608272 -76264897 - MER44D DNA MER2_type -9 600 1 269 314 8 32 chr13 25608289 25608413 -76264756 - L2 LINE L2 -182 3090 2970 723 327 44 17 chr13 25608943 25609304 -76263865 + MLT1I LTR MaLR 39 409 0 925 188 41 41 chr13 25610439 25610636 -76262533 - AluJo SINE Alu -7 305 109 589 253 129 10 chr13 25610734 25610928 -76262241 - MER45C DNA AcHobo -724 229 13 31 0 0 0 chr13 25611554 25611585 -76261584 + AT_rich Low_complexity Low_complexity 1 31 0 352 270 132 11 chr13 25611828 25612002 -76261167 + L1ME4a LINE L1 5589 5783 -338 364 223 29 39 chr13 25612010 25612113 -76261056 + MIR SINE MIR 1 102 -160 405 277 93 63 chr13 25612131 25612457 -76260712 - MLT1H LTR MaLR -2 547 96 849 168 90 18 chr13 25612480 25612647 -76260522 - MER20 DNA MER1_type -12 207 29 265 262 193 22 chr13 25612818 25613093 -76260076 + L1ME4a LINE L1 5799 6120 -1 373 255 149 27 chr13 25613349 25613537 -76259632 + L1ME LINE L1 5473 5683 -438 555 277 85 68 chr13 25615653 25616123 -76257046 + MLT1J LTR MaLR 1 478 -33 210 319 123 23 chr13 25616852 25617194 -76255975 + L2 LINE L2 2471 2846 -468 3528 162 31 15 chr13 25617302 25617968 -76255201 - L1MC2 LINE L1 -10 6334 5658 313 350 37 25 chr13 25617985 25618148 -76255021 + L2 LINE L2 2897 3061 -211 2754 20 0 0 chr13 25618306 25618606 -76254563 - AluYb8 SINE Alu -18 300 1 399 312 200 5 chr13 25618834 25619049 -76254120 + MIR SINE MIR 2 258 -4 3818 106 31 30 chr13 25619098 25619740 -76253429 - L1MA3 LINE L1 -158 6147 5505 803 304 90 24 chr13 25619909 25620182 -76252987 + LTR16B LTR ERVL 1 313 -151 3114 122 48 19 chr13 25620182 25620698 -76252471 - LTR26B LTR ERV1 0 531 1 803 304 90 24 chr13 25620698 25620845 -76252324 + LTR16B LTR ERVL 313 449 -15 1541 140 20 48 chr13 25622233 25622444 -76250725 + MER49 LTR ERV1 1 203 -720 2318 105 0 0 chr13 25622444 25622738 -76250431 - AluSx SINE Alu -18 294 1 1541 140 20 48 chr13 25622738 25622819 -76250350 + MER49 LTR ERV1 203 285 -638 392 180 0 77 chr13 25622811 25622926 -76250243 + MER4E LTR ERV1 59 168 -611 * 3033 119 47 43 chr13 25623406 25623741 -76249428 - LTR26B LTR ERV1 0 531 192 2045 124 7 0 chr13 25623741 25624031 -76249138 - AluSq SINE Alu -21 292 1 3033 119 47 43 chr13 25624031 25624224 -76248945 - LTR26B LTR ERV1 -339 192 1 234 345 34 10 chr13 25624646 25624805 -76248364 + MIR SINE MIR 15 228 -34 1118 208 100 20 chr13 25624888 25625035 -76248134 + MLT1B LTR MaLR 23 157 -233 1726 177 3 19 chr13 25625035 25625346 -76247823 + AluSx SINE Alu 1 306 -6 1118 208 100 20 chr13 25625346 25625539 -76247630 + MLT1B LTR MaLR 157 390 0 1591 188 71 6 chr13 25626907 25627075 -76246094 - MSTD LTR MaLR 0 396 240 252 0 0 0 chr13 25627075 25627103 -76246066 + (GA)n Simple_repeat Simple_repeat 1 28 0 1591 188 71 6 chr13 25627103 25627270 -76245899 - MSTD LTR MaLR -156 240 39 10742 125 30 3 chr13 25627271 25629801 -76243368 - L1PA10 LINE L1 0 6168 3570 1673 245 59 65 chr13 25629802 25630713 -76242456 - L1PA12 LINE L1 -4770 2228 37 368 100 25 26 chr13 25630722 25630794 -76242375 - MSTD LTR MaLR -289 76 1 211 321 104 33 chr13 25631044 25631225 -76241944 + MIR3 SINE MIR 1 187 -63 2068 112 7 7 chr13 25631402 25631697 -76241472 - AluSx SINE Alu -17 295 1 522 287 6 24 chr13 25631725 25631892 -76241277 + MLT1J2 LTR MaLR 37 200 -250 * 2185 233 16 21 chr13 25631887 25632453 -76240716 - MER119 DNA MER1_type -16 567 5 520 239 113 50 chr13 25632458 25632697 -76240472 + MLT1J2 LTR MaLR 197 450 0 2180 101 0 36 chr13 25633701 25634007 -76239162 - AluSx SINE Alu -17 295 1 1516 127 72 36 chr13 25634138 25634414 -76238755 - AluJo SINE Alu 0 312 27 1308 77 0 0 chr13 25634737 25634906 -76238263 - AluY SINE Alu -6 305 137 1008 186 90 32 chr13 25634960 25635456 -76237713 + MLT1E3 LTR MaLR 20 624 0 192 163 0 0 chr13 25635695 25635738 -76237431 + (CAG)n Simple_repeat Simple_repeat 2 44 0 817 153 0 36 chr13 25637059 25637196 -76235973 + FLAM_C SINE Alu 2 133 0 605 314 29 14 chr13 25637376 25637512 -76235657 - MIR SINE MIR -22 240 98 406 145 0 84 chr13 25637512 25637595 -76235574 + MER116 DNA Mariner 3 78 -2 605 314 29 14 chr13 25637595 25637668 -76235501 - MIR SINE MIR -164 98 28 925 152 79 0 chr13 25638082 25638260 -76234909 - LTR47A LTR ERVL 0 452 261 58 47 0 0 chr13 25639562 25639648 -76233521 + AT_rich Low_complexity Low_complexity 1 86 0 314 256 0 0 chr13 25639649 25639735 -76233434 + T-rich Low_complexity Low_complexity 1 86 0 1558 159 14 0 chr13 25639766 25640055 -76233114 - L1MA8 LINE L1 -4 6287 5995 208 250 125 0 chr13 25641153 25641217 -76231952 + MIR3 SINE MIR 85 156 -52 260 360 27 27 chr13 25643086 25643197 -76229972 + L2 LINE L2 2223 2333 -981 322 271 76 49 chr13 25644433 25644577 -76228592 + L2 LINE L2 3166 3313 0 543 241 24 111 chr13 25644690 25644897 -76228272 + MIR SINE MIR 73 261 -1 343 213 12 0 chr13 25646454 25646534 -76226635 - MLT1I LTR MaLR -283 126 46 656 151 126 8 chr13 25647459 25647578 -76225591 + FLAM_C SINE Alu 1 133 0 1923 132 10 24 chr13 25647678 25647974 -76225195 - AluSq SINE Alu -21 292 1 454 254 37 75 chr13 25647995 25648263 -76224906 + MIR SINE MIR 3 260 -2 1190 219 0 0 chr13 25648527 25648769 -76224400 + MLT2C1 LTR ERVL 6 247 -150 209 347 21 0 chr13 25649139 25649234 -76223935 + L2 LINE L2 1542 1638 -1676 225 159 0 0 chr13 25649238 25649282 -76223887 + (ATG)n Simple_repeat Simple_repeat 2 45 0 332 347 28 35 chr13 25649315 25649459 -76223710 - MIR SINE MIR -87 175 33 7395 185 21 46 chr13 25649761 25649872 -76223297 + L1MC1 LINE L1 20 132 -6294 2333 136 8 104 chr13 25649872 25649942 -76223227 + MSTB LTR MaLR 2 77 -349 1944 121 7 0 chr13 25649942 25650214 -76222955 + AluSx SINE Alu 30 303 -9 2333 136 8 104 chr13 25650214 25650613 -76222556 + MSTB LTR MaLR 77 426 0 7395 185 21 46 chr13 25650613 25651551 -76221618 + L1MC1 LINE L1 132 1094 -5332 1489 168 4 0 chr13 25651551 25651819 -76221350 + L1MB1 LINE L1 5899 6167 -1 7395 185 21 46 chr13 25651819 25652656 -76220513 + L1MC1 LINE L1 1094 1950 -4476 4601 230 16 19 chr13 25652660 25653975 -76219194 + L1MC1 LINE L1 4080 5390 -1036 1113 140 11 0 chr13 25653987 25654173 -76218996 + L1PA13 LINE L1 5965 6152 -11 515 177 13 92 chr13 25654179 25654421 -76218748 + MLT1C LTR MaLR 160 421 -46 5880 149 24 25 chr13 25654445 25655655 -76217514 + L1MC1 LINE L1 5403 6612 -1 561 304 62 27 chr13 25655913 25656137 -76217032 + MIR SINE MIR 15 246 -16 270 143 243 29 chr13 25656743 25656813 -76216356 + MIR SINE MIR 108 192 -70 225 203 68 17 chr13 25656980 25657039 -76216130 + L2 LINE L2 3226 3287 -26 1504 200 43 7 chr13 25657213 25657493 -76215676 + AluJo SINE Alu 1 290 -22 2851 161 40 9 chr13 25657506 25658078 -76215091 + L1MB3 LINE L1 5579 6168 -15 951 211 83 15 chr13 25659628 25659893 -76213276 + MER4D LTR ERV1 621 903 0 194 360 13 0 chr13 25661184 25661259 -76211910 + L3 LINE CR1 755 830 -747 424 262 161 13 chr13 25661289 25661438 -76211731 + MIR3 SINE MIR 15 185 -23 514 165 40 191 chr13 25661471 25661743 -76211426 + L1MC4 LINE L1 6796 7026 -1016 375 227 82 0 chr13 25661758 25661868 -76211301 + L1MC4 LINE L1 7924 8042 0 532 306 179 32 chr13 25662085 25662464 -76210705 + L3 LINE CR1 1099 1533 -44 24 0 0 0 chr13 25662756 25662780 -76210389 + AT_rich Low_complexity Low_complexity 1 24 0 339 265 22 72 chr13 25662794 25662975 -76210194 + L1M4 LINE L1 4487 4658 -1488 1019 221 53 0 chr13 25663810 25664018 -76209151 - MER58A DNA MER1_type 0 224 6 334 262 151 8 chr13 25664839 25664965 -76208204 - MIR3 SINE MIR -1 207 64 288 299 37 27 chr13 25666538 25666725 -76206444 + HAL1 LINE L1 1616 1804 -703 601 260 15 10 chr13 25666734 25666938 -76206231 + L1MA9 LINE L1 6070 6274 -38 2169 117 0 13 chr13 25666967 25667276 -76205893 + AluSg SINE Alu 1 305 -5 2033 155 3 0 chr13 25667497 25667794 -76205375 - AluSx SINE Alu -14 298 1 325 351 8 15 chr13 25667975 25668106 -76205063 + L2 LINE L2 3182 3311 -2 249 270 135 8 chr13 25668210 25668336 -76204833 + MLT1L LTR MaLR 474 615 0 1593 213 80 8 chr13 25668730 25668943 -76204226 - LTR52 LTR ERVL -1 420 224 201 94 0 0 chr13 25668943 25668975 -76204194 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 1593 213 80 8 chr13 25668975 25669151 -76204018 - LTR52 LTR ERVL -197 224 3 5892 151 16 10 chr13 25669663 25671258 -76201911 - L1PB1 LINE L1 -2 6865 5267 3319 173 80 1 chr13 25671259 25671903 -76201266 - L1PB1 LINE L1 -3412 3450 2737 181 0 69 0 chr13 25671903 25671932 -76201237 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3319 173 80 1 chr13 25671932 25672030 -76201139 - L1PB1 LINE L1 -4125 2737 2648 * 6715 193 167 8 chr13 25672014 25673820 -76199349 - L1PB1 LINE L1 -4765 2098 6 836 325 89 8 chr13 25674169 25674538 -76198631 + MLT1L LTR MaLR 7 405 -210 243 227 34 68 chr13 25674603 25674652 -76198517 + MLT1L LTR MaLR 523 569 -46 1567 137 160 28 chr13 25674652 25675089 -76198080 - LTR54B LTR ERV1 -2 496 2 243 227 34 68 chr13 25675089 25675127 -76198042 + MLT1L LTR MaLR 569 607 -8 460 266 71 13 chr13 25675307 25675461 -76197708 + MLT1H LTR MaLR 180 342 -207 944 286 51 32 chr13 25675639 25676009 -76197160 + MLT1I LTR MaLR 33 409 0 1229 223 129 88 chr13 25676009 25676090 -76197079 - L2 LINE L2 -254 3059 2983 2157 133 33 16 chr13 25676090 25676457 -76196712 - THE1C LTR MaLR -2 373 1 1229 223 129 88 chr13 25676457 25676686 -76196483 - L2 LINE L2 -330 2983 2765 1718 151 14 7 chr13 25676686 25676964 -76196205 - AluJo SINE Alu -32 280 1 1229 223 129 88 chr13 25676964 25677276 -76195893 - L2 LINE L2 -548 2765 2420 425 287 57 29 chr13 25678284 25678538 -76194631 + L2 LINE L2 2760 3018 -254 250 222 63 0 chr13 25678643 25678706 -76194463 - L2 LINE L2 -557 2757 2691 232 175 0 0 chr13 25678701 25678741 -76194428 + L2 LINE L2 3027 3066 -247 * 2742 150 6 8 chr13 25678782 25679250 -76193919 - MER41B LTR ERV1 -39 596 130 298 314 103 21 chr13 25679293 25679615 -76193554 - LTR33 LTR ERVL -156 367 33 309 324 199 12 chr13 25679645 25679901 -76193268 + L2 LINE L2 3001 3304 -9 245 222 19 0 chr13 25679901 25679955 -76193214 + GA-rich Low_complexity Low_complexity 3 57 0 310 354 31 23 chr13 25680152 25680282 -76192887 - MIR SINE MIR -71 191 61 261 0 0 0 chr13 25680924 25680953 -76192216 + (TG)n Simple_repeat Simple_repeat 2 30 0 1172 233 163 96 chr13 25681656 25682209 -76190960 + MLT1G1 LTR MaLR 1 590 -5 419 264 56 71 chr13 25682852 25683049 -76190120 - L2 LINE L2 -3 3310 3117 1561 116 6 142 chr13 25683923 25684298 -76188871 - AluSg1 SINE Alu 0 309 1 188 250 19 39 chr13 25684755 25684807 -76188362 + MIR SINE MIR 47 97 -165 305 267 89 20 chr13 25685928 25686074 -76187095 - MER103 DNA DNA 0 166 11 219 265 88 98 chr13 25687764 25687866 -76185303 - MIR3 SINE MIR -105 103 3 878 93 106 56 chr13 25688081 25688242 -76184927 - MER44D DNA MER2_type -4 701 533 4352 116 52 4 chr13 25688242 25688960 -76184209 - Tigger3(Golem) DNA MER2_type -1 3028 2277 464 169 0 0 chr13 25688953 25689024 -76184145 - Tigger3(Golem) DNA MER2_type -2923 106 36 * 576 250 79 0 chr13 25689084 25689236 -76183933 - MER44D DNA MER2_type -171 438 5 797 234 72 63 chr13 25689246 25689579 -76183590 + MER46C DNA MER2_type 3 338 0 673 235 6 0 chr13 25689608 25689770 -76183399 - HAL1b LINE L1 -7 1341 1179 790 251 118 73 chr13 25689816 25689943 -76183226 - HAL1b LINE L1 -323 1025 905 3622 198 20 66 chr13 25689943 25690959 -76182210 + LTR5 LTR ERVK 1 969 0 790 251 118 73 chr13 25690959 25691340 -76181829 - HAL1b LINE L1 -443 905 494 2762 76 3 0 chr13 25691580 25691934 -76181235 - THE1A LTR MaLR 0 355 1 203 267 0 0 chr13 25691978 25692038 -76181131 + T-rich Low_complexity Low_complexity 2 61 0 345 309 115 7 chr13 25692105 25692244 -76180925 + L2 LINE L2 3160 3313 0 292 250 99 33 chr13 25693555 25693573 -76179596 - L1MA10 LINE L1 -4 6330 6313 3146 212 85 26 chr13 25693573 25694206 -76178963 - L1ME1 LINE L1 -12 6154 5457 1766 160 0 27 chr13 25694206 25694341 -76178828 + AluJo SINE Alu 3 140 -172 2187 81 22 0 chr13 25694341 25694644 -76178525 + AluSc SINE Alu 1 309 0 1766 160 0 27 chr13 25694644 25694801 -76178368 + AluJo SINE Alu 140 288 -24 3146 212 85 26 chr13 25694801 25695017 -76178152 - L1ME1 LINE L1 -709 5457 5255 1786 174 47 20 chr13 25695017 25695426 -76177743 - LTR52 LTR ERVL -1 420 1 1971 123 4 7 chr13 25695482 25695759 -76177410 - AluSq SINE Alu -37 276 1 271 215 46 31 chr13 25696236 25696301 -76176868 - L2 LINE L2 -23 3249 3184 234 143 18 18 chr13 25697114 25697170 -76175999 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 216 269 19 0 chr13 25697199 25697251 -76175918 + GA-rich Low_complexity Low_complexity 1 53 0 564 308 0 0 chr13 25697272 25697439 -76175730 - MIR SINE MIR -32 230 65 230 329 163 50 chr13 25697575 25698055 -76175114 - L2 LINE L2 -773 2541 2008 578 240 130 75 chr13 25700528 25700836 -76172333 - MLT1J LTR MaLR -46 465 141 655 320 123 5 chr13 25700850 25701247 -76171922 + L1MEc LINE L1 90 533 -5586 301 241 0 0 chr13 25701304 25701362 -76171807 + L1MEc LINE L1 615 672 -5447 245 267 63 7 chr13 25701364 25701514 -76171655 + L1MEc LINE L1 1535 1654 -861 449 259 125 51 chr13 25702219 25702404 -76170765 + L1MEc LINE L1 2663 2833 -3296 2127 212 43 25 chr13 25702404 25702914 -76170255 + LTR40a LTR ERVL 1 519 0 449 259 125 51 chr13 25702914 25703318 -76169851 + L1MEc LINE L1 2833 3296 -2833 407 315 45 94 chr13 25704239 25704506 -76168663 + L2 LINE L2 3019 3272 0 1397 237 132 20 chr13 25704832 25705280 -76167889 - MLT1D LTR MaLR 0 505 8 1847 141 42 0 chr13 25706095 25706379 -76166790 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr13 25708027 25708050 -76165119 + AT_rich Low_complexity Low_complexity 1 23 0 205 342 162 0 chr13 25708653 25708770 -76164399 + MIR SINE MIR 32 167 -95 24 0 0 0 chr13 25709302 25709326 -76163843 + AT_rich Low_complexity Low_complexity 1 24 0 241 250 78 0 chr13 25710122 25710186 -76162983 + MIR3 SINE MIR 133 201 -7 5300 155 9 12 chr13 25710397 25711285 -76161884 - MER4D LTR ERV1 -17 886 2 549 224 129 21 chr13 25711468 25711709 -76161460 + LTR37A LTR ERV1 197 421 -5 240 35 0 0 chr13 25711734 25711763 -76161406 + (TG)n Simple_repeat Simple_repeat 1 29 0 2198 137 30 30 chr13 25713007 25713371 -76159798 + THE1B LTR MaLR 1 364 0 300 208 0 0 chr13 25713463 25713516 -76159653 - MER91B DNA MER1_type -137 53 1 402 21 0 0 chr13 25714247 25714294 -76158875 + (TG)n Simple_repeat Simple_repeat 2 48 0 307 280 85 44 chr13 25714998 25715156 -76158013 - MIR SINE MIR -55 207 38 224 295 125 54 chr13 25715681 25715793 -76157376 + L2 LINE L2 3136 3255 -17 25 0 0 0 chr13 25716114 25716139 -76157030 + AT_rich Low_complexity Low_complexity 1 25 0 1281 235 91 20 chr13 25716254 25716595 -76156574 - MLT1A1 LTR MaLR 0 365 1 731 286 109 52 chr13 25716597 25717121 -76156048 - L1MC4a LINE L1 -1836 5972 5419 448 178 262 9 chr13 25717198 25717305 -76155864 + MER45 DNA AcHobo 1448 1581 0 275 301 209 8 chr13 25717561 25717648 -76155521 - L1ME LINE L1 -527 5635 5567 495 0 0 0 chr13 25717648 25717703 -76155466 + (TA)n Simple_repeat Simple_repeat 1 55 0 275 301 209 8 chr13 25717703 25717874 -76155295 - L1ME LINE L1 -595 5567 5325 626 292 89 49 chr13 25717907 25718597 -76154572 - L1ME LINE L1 -939 5207 4546 882 144 0 0 chr13 25718597 25718722 -76154447 + FLAM_C SINE Alu 1 125 -8 204 40 0 0 chr13 25718729 25718754 -76154415 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 626 292 89 49 chr13 25718754 25719116 -76154053 - L1ME LINE L1 -1605 4541 3999 416 345 60 42 chr13 25719122 25719504 -76153665 - MLT1I LTR MaLR -2 407 19 765 295 38 30 chr13 25719614 25720011 -76153158 - L1ME LINE L1 -2268 3878 3476 209 341 77 0 chr13 25720892 25720983 -76152186 + MIR SINE MIR 36 133 -75 700 200 14 98 chr13 25721097 25721312 -76151857 + MER3 DNA MER1_type 6 202 -7 2158 128 7 0 chr13 25723148 25723454 -76149715 + AluSx SINE Alu 1 308 -4 322 135 0 40 chr13 25723471 25723545 -76149624 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 2227 111 7 0 chr13 25723932 25724238 -76148931 + AluY SINE Alu 1 308 -3 180 0 0 0 chr13 25724342 25724362 -76148807 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 236 351 53 47 chr13 25726800 25726971 -76146198 + MIR SINE MIR 77 248 -14 261 320 78 31 chr13 25727538 25727666 -76145503 - L2 LINE L2 0 3272 3139 587 114 13 0 chr13 25727933 25728012 -76145157 + MADE1 DNA Mariner 1 80 0 26 0 0 0 chr13 25729203 25729229 -76143940 + AT_rich Low_complexity Low_complexity 1 26 0 535 255 42 75 chr13 25730194 25730433 -76142736 + L1ME4a LINE L1 5412 5642 -479 420 271 49 42 chr13 25730448 25730592 -76142577 - MIR SINE MIR -70 192 48 888 228 52 77 chr13 25730669 25731072 -76142097 + L1ME4a LINE L1 5710 6102 -19 711 146 28 97 chr13 25731086 25731230 -76141939 + AluJb SINE Alu 2 135 -177 492 299 112 5 chr13 25731317 25731531 -76141638 - MIR SINE MIR 0 262 26 * 643 291 84 0 chr13 25731528 25731741 -76141428 + MIR SINE MIR 5 235 -27 376 296 70 9 chr13 25731799 25731914 -76141255 + MIR SINE MIR 13 134 -128 1517 201 85 13 chr13 25733148 25733466 -76139703 + MER58B DNA MER1_type 1 341 0 1064 169 33 5 chr13 25733474 25733658 -76139511 - MER5A DNA MER1_type 0 189 1 525 263 160 30 chr13 25734118 25734185 -76138984 - MLT1H LTR MaLR 0 555 498 207 0 0 0 chr13 25734185 25734208 -76138961 + (TTG)n Simple_repeat Simple_repeat 2 24 0 525 263 160 30 chr13 25734208 25734520 -76138649 - MLT1H LTR MaLR -57 498 114 1645 148 73 20 chr13 25735256 25735437 -76137732 + L1MB7 LINE L1 5652 5857 -327 2419 144 3 19 chr13 25735437 25735806 -76137363 + MER47A DNA MER2_type 4 366 0 1645 148 73 20 chr13 25735806 25735927 -76137242 + L1MB7 LINE L1 5857 5970 -214 1953 157 49 35 chr13 25735955 25736325 -76136844 - THE1C LTR MaLR 0 375 1 867 199 46 7 chr13 25736705 25736856 -76136313 - FRAM SINE Alu -18 158 2 801 281 23 30 chr13 25736940 25737203 -76135966 - MIR SINE MIR 0 262 2 324 263 12 0 chr13 25737443 25737523 -76135646 - L2 LINE L2 -4 3268 3188 2720 148 16 73 chr13 25737665 25738157 -76135012 - MLT2C2 LTR ERVL 0 464 1 300 291 146 36 chr13 25738529 25738694 -76134475 - MIR3 SINE MIR -3 205 23 197 175 53 53 chr13 25738787 25738844 -76134325 + MIR SINE MIR 87 143 -119 297 337 83 12 chr13 25738851 25738949 -76134220 - MER5A DNA MER1_type 0 189 99 2451 94 0 0 chr13 25738949 25739258 -76133911 - AluSp SINE Alu -4 309 1 297 337 83 12 chr13 25739258 25739328 -76133841 - MER5A DNA MER1_type -90 99 9 198 243 0 108 chr13 25739324 25739398 -76133771 + MIR3 SINE MIR 142 207 -1 * 380 245 21 0 chr13 25739504 25739598 -76133571 - MER94 DNA DNA 0 134 39 2143 103 7 3 chr13 25740041 25740333 -76132836 - AluSg SINE Alu -17 293 1 212 256 0 0 chr13 25740484 25740527 -76132642 - L2 LINE L2 -4 3309 3267 248 267 55 73 chr13 25740775 25740940 -76132229 + L2 LINE L2 3049 3210 -103 534 363 144 5 chr13 25741439 25741808 -76131361 - L3 LINE CR1 -922 655 236 291 43 0 5 chr13 25741892 25741939 -76131230 + MADE1 DNA Mariner 4 38 -42 30 0 0 0 chr13 25741955 25741985 -76131184 + AT_rich Low_complexity Low_complexity 1 30 0 343 65 0 0 chr13 25741985 25742031 -76131138 + MADE1 DNA Mariner 35 80 0 359 310 123 77 chr13 25742035 25742260 -76130909 + L3 LINE CR1 763 1015 -562 2237 125 0 0 chr13 25742260 25742571 -76130598 + AluSx SINE Alu 1 311 -1 359 310 123 77 chr13 25742571 25742735 -76130434 + L3 LINE CR1 1015 1170 -407 763 307 53 0 chr13 25743077 25743305 -76129864 + MIR SINE MIR 2 241 -21 418 290 107 45 chr13 25743311 25743535 -76129634 - MIR SINE MIR -24 238 1 358 301 45 30 chr13 25744608 25744787 -76128382 - MER20B DNA MER1_type 0 219 34 231 88 0 0 chr13 25744934 25744968 -76128201 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1249 188 71 23 chr13 25744971 25745237 -76127932 - AluJo SINE Alu -33 279 1 306 346 68 0 chr13 25745383 25745516 -76127653 + L3 LINE CR1 1169 1310 -267 467 332 62 12 chr13 25745565 25745809 -76127360 + MIR SINE MIR 1 256 -6 236 204 0 37 chr13 25745960 25746014 -76127155 + MLT1L LTR MaLR 9 60 -555 2894 131 41 5 chr13 25746015 25746426 -76126743 - MSTB LTR MaLR 0 426 1 298 154 115 91 chr13 25746796 25746909 -76126260 + MLT1I LTR MaLR 275 549 0 516 275 64 64 chr13 25747701 25747787 -76125382 + MIR SINE MIR 20 105 -157 1875 194 41 22 chr13 25747787 25748154 -76125015 - MLT1A2 LTR MaLR 0 374 1 516 275 64 64 chr13 25748154 25748262 -76124907 + MIR SINE MIR 105 217 -45 330 87 0 0 chr13 25748262 25748308 -76124861 + (TA)n Simple_repeat Simple_repeat 1 46 0 516 275 64 64 chr13 25748308 25748330 -76124839 + MIR SINE MIR 216 237 -25 1121 323 167 23 chr13 25748461 25749430 -76123739 - L3 LINE CR1 -58 1519 367 31724 120 15 72 chr13 25749467 25755981 -76117188 - L1PA7 LINE L1 -2 6152 13 2288 8 0 0 chr13 25756698 25756942 -76116227 - L1PA2 LINE L1 -1 6154 5911 2472 12 0 0 chr13 25756942 25757263 -76115906 + L1P LINE L1 5107 5427 -728 223 329 0 0 chr13 25758737 25758810 -76114359 + (CAG)n Simple_repeat Simple_repeat 3 75 0 367 281 97 23 chr13 25758893 25759110 -76114059 + LTR33A LTR ERVL 275 507 -16 189 349 75 0 chr13 25760900 25761006 -76112163 - MIR SINE MIR -51 211 98 491 200 200 70 chr13 25761452 25761611 -76111558 + L1ME4a LINE L1 5793 5930 -191 1737 180 7 10 chr13 25761611 25761917 -76111252 + AluJo SINE Alu 7 311 -1 491 200 200 70 chr13 25761917 25761960 -76111209 + L1ME4a LINE L1 5930 5966 -155 1421 171 4 17 chr13 25761960 25762199 -76110970 - MER46A DNA MER2_type 0 236 1 491 200 200 70 chr13 25762199 25762280 -76110889 + L1ME4a LINE L1 5966 6114 -7 21 36 0 0 chr13 25762290 25762318 -76110851 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 25762402 25762432 -76110737 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr13 25762751 25762771 -76110398 + (T)n Simple_repeat Simple_repeat 1 20 0 2294 50 0 57 chr13 25763113 25763448 -76109721 + AluY SINE Alu 1 318 0 264 255 57 92 chr13 25764093 25764234 -76108935 + MIR SINE MIR 123 258 -4 841 173 18 36 chr13 25764423 25764591 -76108578 - MER20 DNA MER1_type -54 165 1 235 241 0 17 chr13 25764801 25764859 -76108310 + L2 LINE L2 2999 3055 -217 463 283 181 22 chr13 25765824 25766050 -76107119 - MIR SINE MIR 0 262 1 701 269 63 36 chr13 25766352 25766575 -76106594 - MIR SINE MIR 0 262 34 390 232 39 126 chr13 25766660 25766867 -76106302 - MER5A DNA MER1_type 0 189 1 297 0 0 0 chr13 25768214 25768247 -76104922 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 271 140 28 chr13 25769358 25769465 -76103704 + L2 LINE L2 3193 3311 -2 1751 200 18 30 chr13 25769556 25770100 -76103069 + MER97c DNA MER1_type? 1 606 -484 3118 191 23 0 chr13 25770262 25770604 -76102565 - L1PA16 LINE L1 -24 6142 5780 357 24 0 0 chr13 25770604 25770646 -76102523 + (TG)n Simple_repeat Simple_repeat 2 43 0 3118 191 23 0 chr13 25770646 25770875 -76102294 - L1PA16 LINE L1 -386 5780 5558 2721 252 39 0 chr13 25770875 25771513 -76101656 - L1ME1 LINE L1 -56 6110 5448 1692 265 75 18 chr13 25771909 25772457 -76100712 - MLT1E LTR MaLR 0 593 15 359 261 346 0 chr13 25772466 25772596 -76100573 + MER96 DNA MER1_type 1 175 0 228 291 87 58 chr13 25772858 25772961 -76100208 + MER5A DNA MER1_type 1 106 -83 2011 120 0 24 chr13 25773837 25774159 -76099010 + AluSx SINE Alu 1 315 0 181 224 52 52 chr13 25777068 25777126 -76096043 - L2 LINE L2 -6 3266 3209 207 0 0 0 chr13 25777448 25777471 -76095698 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2151 139 7 0 chr13 25777491 25777801 -76095368 + AluSx SINE Alu 1 312 0 542 301 46 6 chr13 25777896 25778069 -76095100 + MIR SINE MIR 7 186 -76 2643 107 12 22 chr13 25778236 25778638 -76094531 + L1PA16 LINE L1 5760 6157 -9 814 255 29 31 chr13 25778819 25779242 -76093927 + L1ME3A LINE L1 5721 6131 -31 273 330 126 51 chr13 25780592 25780833 -76092336 + L2 LINE L2 2288 2510 -762 1992 117 125 67 chr13 25780833 25781234 -76091935 + MSTA LTR MaLR 1 424 -4 273 330 126 51 chr13 25781234 25781842 -76091327 + L2 LINE L2 2510 3223 -49 1017 251 5 0 chr13 25781939 25782162 -76091007 + MER58A DNA MER1_type 1 224 0 708 252 105 55 chr13 25782401 25782878 -76090291 + MLT1J LTR MaLR 5 505 -6 2265 179 44 72 chr13 25784320 25784890 -76088279 + MLT2B3 LTR ERVL 1 554 0 191 266 25 76 chr13 25785264 25785343 -76087826 + MIR SINE MIR 108 182 -80 344 300 130 20 chr13 25785874 25786074 -76087095 - MIR SINE MIR -18 244 23 682 258 51 23 chr13 25786090 25786307 -76086862 + MIR SINE MIR 40 262 0 323 365 60 16 chr13 25786330 25786645 -76086524 + L2 LINE L2 2153 2481 -833 26 30 0 0 chr13 25786760 25786793 -76086376 + AT_rich Low_complexity Low_complexity 1 33 0 668 211 0 12 chr13 25786793 25786954 -76086215 - MER96B DNA MER1_type? -258 159 1 1789 167 48 14 chr13 25787480 25787833 -76085336 + MLT1A1 LTR MaLR 1 365 0 2133 125 0 26 chr13 25788106 25788419 -76084750 + AluSx SINE Alu 1 305 -7 271 315 12 12 chr13 25789339 25789456 -76083713 + MIR SINE MIR 3 120 -88 1649 136 0 12 chr13 25790530 25790780 -76082389 - AluJo SINE Alu -21 291 45 2208 128 126 5 chr13 25791537 25791919 -76081250 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr13 25792012 25792041 -76081128 + AT_rich Low_complexity Low_complexity 1 29 0 180 176 0 0 chr13 25792517 25792551 -76080618 + (CATA)n Simple_repeat Simple_repeat 2 35 0 281 317 113 36 chr13 25792614 25792835 -76080334 + L2 LINE L2 2811 3048 -224 254 71 0 24 chr13 25793078 25793120 -76080049 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 227 196 22 0 chr13 25794248 25794294 -76078875 - MIR SINE MIR -114 148 102 549 224 82 20 chr13 25794495 25794642 -76078527 + MIR SINE MIR 3 158 -104 285 239 228 58 chr13 25795406 25795761 -76077408 - MLT1L LTR MaLR -138 477 1 998 150 0 0 chr13 25795908 25796055 -76077114 + AluSq SINE Alu 151 297 -16 377 336 8 16 chr13 25796105 25796240 -76076929 - MIR3 SINE MIR -31 177 43 1849 113 77 39 chr13 25796314 25796651 -76076518 - THE1B LTR MaLR -12 352 3 11805 92 5 4 chr13 25796653 25798232 -76074937 - THE1B-int LTR MaLR 0 1580 1 2134 118 29 31 chr13 25798232 25798581 -76074588 - THE1B LTR MaLR 0 364 17 426 347 58 11 chr13 25798760 25798950 -76074219 + MIR SINE MIR 57 255 -7 25 51 0 0 chr13 25799678 25799717 -76073452 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr13 25799822 25799850 -76073319 + AT_rich Low_complexity Low_complexity 1 28 0 414 248 169 23 chr13 25800352 25800654 -76072515 + L1MEc LINE L1 797 1142 -5254 723 256 24 71 chr13 25800736 25801486 -76071683 + L1ME LINE L1 710 1462 -4848 897 45 18 0 chr13 25801874 25801985 -76071184 - L1PA10 LINE L1 -4 6164 6052 728 286 67 37 chr13 25802095 25802766 -76070403 - L1M4 LINE L1 -1703 4443 3753 270 0 0 0 chr13 25803002 25803032 -76070137 + (T)n Simple_repeat Simple_repeat 1 30 0 365 276 76 11 chr13 25804636 25804821 -76068348 - L1M3 LINE L1 -718 5450 5254 346 305 41 7 chr13 25805080 25805372 -76067797 + L1ME LINE L1 4291 4592 -1537 229 254 106 7 chr13 25806002 25806144 -76067025 + L1ME LINE L1 5275 5430 -719 1182 90 145 47 chr13 25806435 25806669 -76066500 + MLT1B LTR MaLR 1 257 -133 830 150 90 6 chr13 25806832 25806999 -76066170 + MLT1B LTR MaLR 210 390 0 884 252 32 5 chr13 25807022 25807240 -76065929 - MER58A DNA MER1_type 0 224 1 1872 261 173 28 chr13 25807686 25808729 -76064440 + L2 LINE L2 2115 3313 0 848 285 21 0 chr13 25808813 25809048 -76064121 + MIR SINE MIR 21 260 -2 502 276 83 7 chr13 25809942 25810087 -76063082 - L2 LINE L2 -8 3264 3109 2490 112 22 0 chr13 25810242 25810598 -76062571 + THE1B LTR MaLR 1 364 0 216 196 20 0 chr13 25810720 25810771 -76062398 + L2 LINE L2 3262 3313 0 380 233 58 10 chr13 25812103 25812206 -76060963 - MIR SINE MIR -50 212 105 852 196 63 23 chr13 25812208 25812632 -76060537 + MLT1D LTR MaLR 1 505 0 258 289 21 91 chr13 25812697 25812884 -76060285 - MIR SINE MIR -17 245 72 237 163 0 0 chr13 25814185 25814234 -76058935 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 270 143 0 0 chr13 25814371 25814413 -76058756 + 5S rRNA rRNA 1 42 -79 186 43 0 0 chr13 25814479 25814502 -76058667 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1597 160 21 42 chr13 25814505 25814793 -76058376 - AluJo SINE Alu -30 282 1 2295 106 3 0 chr13 25814952 25815263 -76057906 + AluSx SINE Alu 1 312 0 324 0 0 0 chr13 25815270 25815306 -76057863 + (TA)n Simple_repeat Simple_repeat 2 37 0 1775 149 0 0 chr13 25817838 25818106 -76055063 + AluSx SINE Alu 38 305 -7 282 260 0 27 chr13 25818118 25818191 -76054978 - MER5A DNA MER1_type -24 165 95 782 301 45 4 chr13 25818818 25819064 -76054105 + MIR SINE MIR 7 262 0 387 0 0 0 chr13 25820043 25820086 -76053083 + (TG)n Simple_repeat Simple_repeat 2 44 0 198 405 24 0 chr13 25820194 25820278 -76052891 - L2 LINE L2 -608 2706 2621 1912 160 7 3 chr13 25820558 25820851 -76052318 + AluJb SINE Alu 1 294 -18 330 115 0 0 chr13 25820853 25820905 -76052264 + (TG)n Simple_repeat Simple_repeat 1 52 0 413 291 17 51 chr13 25821881 25822039 -76051130 + MIR SINE MIR 20 172 -61 31 0 0 0 chr13 25822254 25822285 -76050884 + AT_rich Low_complexity Low_complexity 1 31 0 2125 109 10 3 chr13 25822295 25822589 -76050580 + AluSx SINE Alu 1 296 -16 2019 114 3 20 chr13 25822673 25822971 -76050198 + AluSq SINE Alu 1 293 -20 672 287 117 24 chr13 25822978 25823441 -76049728 + L1M4 LINE L1 2318 2823 -3323 258 323 0 8 chr13 25823957 25824084 -76049085 - L1M4 LINE L1 -1480 4666 4541 911 298 111 17 chr13 25824485 25825089 -76048080 - L1M4 LINE L1 -1830 4316 3656 2202 187 44 67 chr13 25825303 25825778 -76047391 + MLT2C2 LTR ERVL 1 464 0 219 238 0 0 chr13 25826430 25826472 -76046697 + (CA)n Simple_repeat Simple_repeat 1 42 0 307 219 41 27 chr13 25826657 25826730 -76046439 + MIR SINE MIR 76 149 -113 2120 183 119 28 chr13 25828695 25829197 -76043972 - Charlie1a DNA MER1_type -907 548 1 1285 230 138 17 chr13 25829424 25829829 -76043340 - MLT1C LTR MaLR 0 467 14 1287 262 58 38 chr13 25830005 25830455 -76042714 - L1ME1 LINE L1 -5 6161 5703 305 343 38 9 chr13 25830600 25830813 -76042356 + L1ME LINE L1 5544 5762 -359 2366 253 35 16 chr13 25831271 25831947 -76041222 + L1ME3A LINE L1 5473 6161 -9 1375 267 34 59 chr13 25832802 25833398 -76039771 + L1MC5 LINE L1 6676 7255 -733 1202 246 62 26 chr13 25833515 25834015 -76039154 + L1MC5 LINE L1 7260 7777 -184 336 296 83 15 chr13 25834765 25834897 -76038272 + MIR SINE MIR 20 160 -102 1705 185 3 7 chr13 25835244 25835541 -76037628 + AluJo SINE Alu 1 296 -16 1449 206 18 83 chr13 25835616 25835783 -76037386 + MLT1A2 LTR MaLR 1 177 -197 16681 28 1 0 chr13 25835783 25838408 -76034761 + L1PA3 LINE L1 3528 6155 0 1449 206 18 83 chr13 25838408 25838637 -76034532 + MLT1A2 LTR MaLR 177 371 -3 186 337 36 24 chr13 25838726 25838809 -76034360 + MIR SINE MIR 64 147 -61 187 320 13 13 chr13 25838861 25838936 -76034233 + MIR SINE MIR 172 246 -16 254 300 108 31 chr13 25838959 25839089 -76034080 + L2 LINE L2 3169 3308 -5 24 0 0 0 chr13 25839396 25839420 -76033749 + AT_rich Low_complexity Low_complexity 1 24 0 205 322 89 0 chr13 25840454 25840544 -76032625 - L2 LINE L2 -528 2786 2689 348 333 68 10 chr13 25840860 25841067 -76032102 + L1MEd LINE L1 264 482 -5637 545 292 55 41 chr13 25841205 25841695 -76031474 + L1MEd LINE L1 654 1150 -4969 2565 52 0 0 chr13 25841737 25842042 -76031127 + AluY SINE Alu 1 305 -6 863 136 0 45 chr13 25842204 25842336 -76030833 + FLAM_C SINE Alu 1 126 -7 22 0 0 0 chr13 25842336 25842358 -76030811 + AT_rich Low_complexity Low_complexity 1 22 0 196 209 0 90 chr13 25842642 25842709 -76030460 - MIR3 SINE MIR -133 75 15 667 240 31 10 chr13 25843517 25843709 -76029460 + LTR16A LTR ERVL 25 220 -230 1938 170 58 33 chr13 25843763 25844304 -76028865 + MLT2A2 LTR ERVL 1 554 0 554 196 45 0 chr13 25844304 25844433 -76028736 + LTR16A LTR ERVL 306 440 -10 1939 159 3 0 chr13 25844466 25844768 -76028401 - AluJo SINE Alu -8 304 2 552 145 0 12 chr13 25844951 25845034 -76028135 + AluJb SINE Alu 172 253 -59 421 238 157 0 chr13 25845069 25845216 -76027953 + LTR16A LTR ERVL 281 450 0 3743 55 0 7 chr13 25845615 25846066 -76027103 - LTR7 LTR ERV1 -2 448 1 2526 81 45 16 chr13 25846066 25846447 -76026722 - HERVH LTR ERV1 0 7713 7322 1364 119 18 44 chr13 25846445 25846671 -76026498 - HERVH LTR ERV1 -1894 5819 5600 * 2458 173 15 0 chr13 25846672 25847076 -76026093 - HERVH LTR ERV1 -2564 5149 4740 1011 143 0 7 chr13 25847075 25847229 -76025940 - HERVH LTR ERV1 -4069 3644 3492 * 871 124 41 0 chr13 25847219 25847364 -76025805 - HERVH LTR ERV1 -4423 3290 3140 * 15769 88 12 16 chr13 25847343 25849610 -76023559 - HERVH LTR ERV1 -4718 2995 739 1141 251 105 33 chr13 25849925 25850476 -76022693 + L1MC4 LINE L1 7442 8032 -10 2432 61 0 22 chr13 25850476 25850788 -76022381 - AluY SINE Alu -2 309 5 236 246 0 14 chr13 25850916 25850985 -76022184 + L1ME3A LINE L1 6100 6167 -3 286 176 0 20 chr13 25851381 25851432 -76021737 - MLT1J LTR MaLR -74 437 388 611 111 10 20 chr13 25851495 25851594 -76021575 + MER4A LTR ERV1 1 98 -566 1799 124 159 90 chr13 25851594 25851920 -76021249 + MER4A LTR ERV1 261 618 -46 2469 60 0 10 chr13 25851920 25852220 -76020949 - AluY SINE Alu -14 297 1 1799 124 159 90 chr13 25852220 25852271 -76020898 + MER4A LTR ERV1 618 664 0 360 342 111 0 chr13 25852280 25852397 -76020772 - MIR SINE MIR -90 172 43 671 280 54 88 chr13 25852437 25852791 -76020378 - MLT1J LTR MaLR -145 366 25 321 254 189 30 chr13 25853014 25853215 -76019954 + L1ME4a LINE L1 5702 5934 -187 307 248 110 35 chr13 25853217 25853362 -76019807 + L1ME4a LINE L1 5962 6117 -4 1466 218 85 19 chr13 25853953 25854329 -76018840 + LTR40c LTR ERVL 65 465 0 412 351 104 13 chr13 25854598 25854752 -76018417 + MER91A DNA MER1_type 1 168 -28 2594 37 0 7 chr13 25855686 25855985 -76017184 - AluY SINE Alu -14 297 1 2345 112 0 3 chr13 25855994 25856306 -76016863 - AluSx SINE Alu -1 311 1 33 25 0 0 chr13 25857471 25857511 -76015658 + AT_rich Low_complexity Low_complexity 1 40 0 721 211 133 0 chr13 25857956 25858122 -76015047 + MER5A DNA MER1_type 2 189 0 356 225 63 36 chr13 25858951 25859062 -76014107 - L2 LINE L2 -5 3267 3154 405 0 0 0 chr13 25861404 25861449 -76011720 + (TG)n Simple_repeat Simple_repeat 2 46 0 6820 53 35 31 chr13 25863068 25864549 -76008620 - SVA Other Other -799 1386 57 938 7 20 61 chr13 25864549 25864697 -76008472 + (GGGAGA)n Simple_repeat Simple_repeat 1 142 0 209 33 33 0 chr13 25866740 25866770 -76006399 + (CA)n Simple_repeat Simple_repeat 2 32 0 253 216 27 27 chr13 25866770 25866844 -76006325 + (CAGAGA)n Simple_repeat Simple_repeat 5 78 0 202 222 22 0 chr13 25867210 25867255 -76005914 + CT-rich Low_complexity Low_complexity 1 46 0 1868 135 13 48 chr13 25867572 25867884 -76005285 - AluJb SINE Alu -11 301 1 673 243 151 0 chr13 25868016 25868168 -76005001 + MER5A DNA MER1_type 12 186 -3 341 321 15 36 chr13 25869030 25869167 -76004002 - MER63 DNA MER1_type -76 760 1 2512 176 32 36 chr13 25869321 25869827 -76003342 + MLT1D LTR MaLR 1 504 -1 498 259 67 0 chr13 25870563 25870698 -76002471 + MIR SINE MIR 105 248 -14 731 215 0 0 chr13 25871693 25871823 -76001346 + FLAM_C SINE Alu 2 131 -2 29 21 0 21 chr13 25871874 25871890 -76001279 + AT_rich Low_complexity Low_complexity 1 16 -30 1792 165 7 0 chr13 25871890 25872181 -76000988 + AluJb SINE Alu 1 293 -19 29 21 0 21 chr13 25872181 25872211 -76000958 + AT_rich Low_complexity Low_complexity 16 46 0 235 368 173 32 chr13 25872298 25872982 -76000187 + L2 LINE L2 2129 2908 -406 248 337 109 0 chr13 25873047 25873139 -76000030 - MER91A DNA MER1_type 0 196 95 403 354 29 23 chr13 25873142 25873317 -75999852 - MER91A DNA MER1_type -20 176 1 351 349 55 0 chr13 25873708 25873817 -75999352 + L2 LINE L2 3136 3250 -22 2323 113 0 0 chr13 25873933 25874243 -75998926 - AluSq SINE Alu -3 310 1 22 0 0 0 chr13 25875369 25875391 -75997778 + AT_rich Low_complexity Low_complexity 1 22 0 210 320 230 11 chr13 25876433 25876611 -75996558 + MIR SINE MIR 34 250 -12 698 148 23 23 chr13 25877350 25877478 -75995691 - LTR12 LTR ERV1 -228 486 359 319 219 0 0 chr13 25877478 25877551 -75995618 - LTR30 LTR ERV1 -98 624 552 1539 86 3 162 chr13 25877551 25877890 -75995279 - LTR12 LTR ERV1 -429 285 1 215 360 88 0 chr13 25877912 25878048 -75995121 + L3b LINE CR1 1319 1466 -117 2147 143 0 0 chr13 25878588 25878888 -75994281 - AluSx SINE Alu -12 300 1 2151 117 3 7 chr13 25880144 25880452 -75992717 - AluSx SINE Alu -3 309 3 1922 151 99 14 chr13 25880461 25880893 -75992276 - MER4D LTR ERV1 -434 469 1 276 79 16 32 chr13 25881134 25881197 -75991972 + (CAAAAA)n Simple_repeat Simple_repeat 2 63 0 5336 206 65 32 chr13 25881210 25882615 -75990554 - MER109 Unknown Unknown -2 2430 980 1508 131 8 17 chr13 25882615 25882852 -75990317 - MER1B DNA MER1_type 0 339 105 2300 167 29 18 chr13 25884120 25884190 -75988979 - MER90 LTR ERV1 -87 527 459 2549 106 0 11 chr13 25884190 25884557 -75988612 + THE1B LTR MaLR 1 363 -1 2300 167 29 18 chr13 25884557 25884934 -75988235 - MER90 LTR ERV1 -155 459 75 7076 57 20 0 chr13 25884939 25885886 -75987283 - L1PA7 LINE L1 -1 6153 5203 360 324 122 38 chr13 25886027 25886240 -75986929 + MIR SINE MIR 21 251 -11 2918 16 0 0 chr13 25886632 25886950 -75986219 + AluYb8 SINE Alu 1 318 0 356 317 129 54 chr13 25887318 25887946 -75985223 + L1MC4a LINE L1 2148 2822 -3324 902 207 29 0 chr13 25887979 25888153 -75985016 - AluJb SINE Alu -5 307 129 314 319 122 16 chr13 25888495 25888749 -75984420 + L1MC4a LINE L1 5089 5369 -777 963 119 7 20 chr13 25888884 25889035 -75984134 + FRAM SINE Alu 3 151 -25 520 337 96 44 chr13 25889063 25889728 -75983441 - L2 LINE L2 -25 3288 2552 12624 116 32 92 chr13 25889729 25890687 -75982482 + Tigger1 DNA MER2_type 1 1015 -1403 2333 93 0 3 chr13 25890687 25890988 -75982181 - AluSx SINE Alu -12 300 1 12624 116 32 92 chr13 25890988 25892602 -75980567 + Tigger1 DNA MER2_type 1015 2417 -1 2194 311 116 48 chr13 25892607 25893727 -75979442 - L2 LINE L2 -777 2537 1257 2251 120 3 3 chr13 25893727 25894036 -75979133 + AluSq SINE Alu 1 309 -4 2194 311 116 48 chr13 25894036 25894644 -75978525 - L2 LINE L2 -2057 1257 692 593 340 57 20 chr13 25895839 25896136 -75977033 - L2 LINE L2 -2671 643 336 180 0 0 0 chr13 25896143 25896163 -75977006 + (T)n Simple_repeat Simple_repeat 1 20 0 2639 210 42 25 chr13 25896165 25896880 -75976289 - L1MC4a LINE L1 0 7808 7082 1532 170 115 0 chr13 25897243 25897513 -75975656 + AluJo SINE Alu 1 301 -11 314 266 90 11 chr13 25897622 25897799 -75975370 + L1MC4a LINE L1 5727 5917 -1891 529 250 64 70 chr13 25897849 25897971 -75975198 - MLT1J2 LTR MaLR -35 411 290 2819 6 3 3 chr13 25897971 25898284 -75974885 + AluYb8 SINE Alu 1 313 -5 529 250 64 70 chr13 25898284 25898568 -75974601 - MLT1J2 LTR MaLR -156 290 4 230 278 0 0 chr13 25899112 25899166 -75974003 + L2 LINE L2 3219 3272 0 415 290 57 8 chr13 25899411 25899535 -75973634 + MER5A DNA MER1_type 38 167 -22 214 263 128 38 chr13 25899416 25899549 -75973620 - MER5A DNA MER1_type -31 158 14 * 1608 233 32 15 chr13 25899852 25900373 -75972796 - MER90 LTR ERV1 0 614 8 841 269 59 20 chr13 25900471 25900776 -75972393 - MLT1J1 LTR MaLR -129 317 1 354 23 0 0 chr13 25902446 25902489 -75970680 + (TG)n Simple_repeat Simple_repeat 2 44 0 426 183 0 0 chr13 25903715 25903830 -75969339 + (TCCA)n Simple_repeat Simple_repeat 4 118 0 389 264 50 0 chr13 25904262 25904383 -75968786 - MER20B DNA MER1_type -604 179 53 316 389 42 27 chr13 25904509 25904841 -75968328 - L2 LINE L2 -560 2754 2418 518 374 74 12 chr13 25905369 25905706 -75967463 - L3 LINE CR1 -782 795 438 26 30 0 0 chr13 25905868 25905901 -75967268 + AT_rich Low_complexity Low_complexity 1 33 0 1986 154 0 0 chr13 25906243 25906548 -75966621 - AluJb SINE Alu -7 305 1 254 83 42 62 chr13 25906871 25906919 -75966250 + MER5A DNA MER1_type 59 105 -84 1401 196 161 7 chr13 25907160 25907589 -75965580 - MLT1D LTR MaLR -9 496 2 1663 270 91 26 chr13 25907951 25908044 -75965125 - HAL1 LINE L1 -604 1903 1818 830 192 66 0 chr13 25908044 25908211 -75964958 - MER5B DNA MER1_type 0 178 1 1663 270 91 26 chr13 25908211 25908883 -75964286 - HAL1 LINE L1 -689 1818 1088 376 343 83 44 chr13 25909015 25909426 -75963743 - HAL1 LINE L1 -1917 590 164 1571 178 146 26 chr13 25909580 25909997 -75963172 + MLT1C LTR MaLR 1 467 0 235 426 59 34 chr13 25909998 25910235 -75962934 + L2 LINE L2 2943 3185 -87 289 202 0 24 chr13 25910803 25910887 -75962282 + CT-rich Low_complexity Low_complexity 4 85 0 183 233 0 23 chr13 25912036 25912079 -75961090 - MIR SINE MIR -2 260 219 286 304 43 14 chr13 25912766 25912904 -75960265 + MARNA DNA Mariner 431 572 -14 24 0 0 0 chr13 25913528 25913552 -75959617 + AT_rich Low_complexity Low_complexity 1 24 0 2237 108 3 3 chr13 25914270 25914565 -75958604 - AluSx SINE Alu -17 295 1 225 179 0 0 chr13 25914709 25914748 -75958421 - L2 LINE L2 -1 3312 3274 474 299 27 27 chr13 25915437 25915584 -75957585 - L2 LINE L2 0 3313 3167 1983 144 144 8 chr13 25915662 25916036 -75957133 - MSTA LTR MaLR 0 428 4 451 281 26 7 chr13 25916164 25916317 -75956852 + MLT1L LTR MaLR 93 248 -367 467 294 86 47 chr13 25916330 25916664 -75956505 - L1MEc LINE L1 -3734 2508 2182 763 268 105 88 chr13 25916707 25917290 -75955879 - HAL1 LINE L1 -1071 1436 844 273 294 99 17 chr13 25917983 25918276 -75954893 + L1ME4a LINE L1 3121 3437 -2709 189 0 0 0 chr13 25918549 25918570 -75954599 + (CA)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr13 25918949 25918970 -75954199 + (CA)n Simple_repeat Simple_repeat 1 21 0 210 71 0 0 chr13 25918970 25918998 -75954171 + (TC)n Simple_repeat Simple_repeat 1 28 0 451 316 108 53 chr13 25919003 25919418 -75953751 + L1ME4a LINE L1 3700 4137 -2009 2155 115 27 0 chr13 25919660 25919956 -75953213 + AluSq SINE Alu 1 304 -9 5234 132 25 63 chr13 25920125 25921097 -75952072 - L1MA8 LINE L1 -6 6285 5277 2069 111 3 41 chr13 25921097 25921412 -75951757 - AluSq SINE Alu -10 303 1 5234 132 25 63 chr13 25921412 25921698 -75951471 - L1MA8 LINE L1 -1014 5277 5097 1950 161 6 3 chr13 25921698 25922009 -75951160 - AluSx SINE Alu 0 312 1 5234 132 25 63 chr13 25922009 25922343 -75950826 - L1MA8 LINE L1 -1194 5097 4752 303 301 193 39 chr13 25922617 25922949 -75950220 + L1ME4a LINE L1 5515 5897 -224 1208 177 23 19 chr13 25923101 25923367 -75949802 + L1MA6 LINE L1 6034 6300 0 355 270 221 33 chr13 25925382 25925953 -75947216 - L1MC4a LINE L1 -1839 5969 5292 471 276 33 26 chr13 25926078 25926230 -75946939 + L2 LINE L2 3161 3313 0 1372 82 146 10 chr13 25926638 25926844 -75946325 - L1PA11 LINE L1 0 6174 5941 283 278 22 44 chr13 25927364 25927477 -75945692 + MIR SINE MIR 42 151 -62 573 262 142 71 chr13 25927588 25927955 -75945214 + HAL1 LINE L1 4 396 -2111 3162 3 0 3 chr13 25928112 25928446 -75944723 + L1PA3 LINE L1 5822 6154 -1 2322 113 0 0 chr13 25930986 25931297 -75941872 - AluSx SINE Alu -1 311 1 582 328 93 48 chr13 25932698 25933095 -75940074 - L2 LINE L2 -5 3308 2852 2027 132 21 0 chr13 25933095 25933384 -75939785 - AluSx SINE Alu -12 300 6 582 328 93 48 chr13 25933384 25933672 -75939497 - L2 LINE L2 -461 2852 2579 774 214 109 50 chr13 25934062 25934300 -75938869 - MER112 DNA MER1_type -1 259 8 4213 98 7 0 chr13 25934364 25934914 -75938255 + MER41A LTR ERV1 1 554 0 1830 217 50 37 chr13 25935030 25935543 -75937626 + MER39 LTR ERV1 1 700 -7 2466 90 0 0 chr13 25935635 25935945 -75937224 + AluSg SINE Alu 1 310 0 341 318 47 8 chr13 25936007 25936136 -75937033 + MIR SINE MIR 10 143 -119 842 270 35 45 chr13 25937486 25937639 -75935530 - LTR16B LTR ERVL 0 464 311 2228 140 89 29 chr13 25937639 25938053 -75935116 - MER65A LTR ERV1 -4 441 3 842 270 35 45 chr13 25938053 25938203 -75934966 - LTR16B LTR ERVL -153 311 164 385 294 98 7 chr13 25938203 25938346 -75934823 + LTR26 LTR ERV1 1 156 -447 951 196 22 45 chr13 25938357 25938581 -75934588 + LTR26 LTR ERV1 385 603 0 318 255 41 69 chr13 25938581 25938713 -75934456 - LTR16B LTR ERVL -303 161 34 2034 224 82 84 chr13 25938774 25938973 -75934196 + MER21B LTR ERV1 1 199 -664 2439 94 0 7 chr13 25938973 25939282 -75933887 + AluSg SINE Alu 1 307 -3 2034 224 82 84 chr13 25939282 25939822 -75933347 + MER21B LTR ERV1 199 739 -124 244 316 129 58 chr13 25939876 25939971 -75933198 + L2 LINE L2 2991 3078 -194 1448 110 48 40 chr13 25939971 25940199 -75932970 - MER30 DNA MER1_type 0 230 1 244 316 129 58 chr13 25940199 25940274 -75932895 + L2 LINE L2 3078 3173 -99 2216 117 0 0 chr13 25940961 25941259 -75931910 + AluSg SINE Alu 1 298 -12 1203 201 39 42 chr13 25941361 25941671 -75931498 - AluJo SINE Alu 0 309 1 474 286 97 19 chr13 25941796 25941950 -75931219 - MIR SINE MIR -89 173 8 186 43 0 0 chr13 25942071 25942094 -75931075 + (T)n Simple_repeat Simple_repeat 1 23 0 2573 59 0 0 chr13 25942096 25942403 -75930766 - AluY SINE Alu -4 307 1 185 35 69 0 chr13 25943788 25943817 -75929352 + T-rich Low_complexity Low_complexity 1 31 0 2128 91 4 0 chr13 25943821 25944095 -75929074 - AluSx SINE Alu -37 275 1 301 242 80 37 chr13 25945376 25945523 -75927646 - MER5B DNA MER1_type -18 171 4 189 307 70 53 chr13 25945523 25945607 -75927562 - L2 LINE L2 -66 3247 3162 247 206 32 48 chr13 25946052 25946115 -75927054 - MER5A DNA MER1_type 0 189 128 789 151 0 8 chr13 25946119 25946238 -75926931 + AluSq/x SINE Alu 2 119 -194 259 59 0 0 chr13 25946238 25946272 -75926897 + Alu SINE Alu 254 287 -13 662 170 28 0 chr13 25946281 25946387 -75926782 - MER5A DNA MER1_type -80 109 1 202 335 86 46 chr13 25946400 25946552 -75926617 - L2 LINE L2 -559 2755 2598 843 146 0 0 chr13 25946610 25946733 -75926436 + AluJb SINE Alu 1 123 -189 245 311 9 38 chr13 25946860 25946966 -75926203 + MIR3 SINE MIR 62 164 -44 1145 228 5 5 chr13 25946974 25947193 -75925976 + MER20 DNA MER1_type 1 219 0 2498 70 0 0 chr13 25947765 25948066 -75925103 + AluY SINE Alu 1 301 -10 935 241 61 67 chr13 25949089 25949417 -75923752 + MSTD LTR MaLR 40 396 0 2175 132 0 0 chr13 25949634 25949937 -75923232 + AluSg SINE Alu 1 303 -7 1507 168 58 24 chr13 25949949 25950241 -75922928 + AluJo SINE Alu 3 304 -8 2140 97 3 10 chr13 25950313 25950611 -75922558 - AluSx SINE Alu -16 296 1 469 221 89 0 chr13 25950957 25951105 -75922064 + L1MC4 LINE L1 6443 6610 -1198 2003 215 113 21 chr13 25951106 25951691 -75921478 - MLT1E2 LTR MaLR 0 626 1 4872 189 73 68 chr13 25951713 25952023 -75921146 + L1MC4 LINE L1 6611 6918 -1124 884 114 7 57 chr13 25952023 25952163 -75921006 + FLAM_C SINE Alu 1 133 0 4872 189 73 68 chr13 25952163 25953064 -75920105 + L1MC4 LINE L1 6918 7831 -211 1494 156 114 35 chr13 25953064 25953353 -75919816 + AluSx SINE Alu 1 312 0 4872 189 73 68 chr13 25953353 25953426 -75919743 + L1MC4 LINE L1 7831 7902 -140 2079 191 43 41 chr13 25953442 25953904 -75919265 + MLT1C LTR MaLR 4 466 -1 652 256 134 59 chr13 25953931 25954065 -75919104 + LTR38B LTR ERV1 61 184 -427 2256 108 0 19 chr13 25954065 25954379 -75918790 + AluSx SINE Alu 1 308 -4 652 256 134 59 chr13 25954379 25954744 -75918425 + LTR38B LTR ERV1 184 611 0 755 189 37 18 chr13 25954860 25955024 -75918145 - LTR49 LTR ERV1 -13 582 416 * 1549 138 270 9 chr13 25955022 25955355 -75917814 - LTR29 LTR ERV1 -202 420 1 2364 88 0 0 chr13 25955379 25955673 -75917496 + AluSg SINE Alu 1 294 -16 237 318 218 0 chr13 25956186 25956356 -75916813 - L2 LINE L2 -627 2687 2481 23 0 0 0 chr13 25957107 25957130 -75916039 + AT_rich Low_complexity Low_complexity 1 23 0 3328 267 113 46 chr13 25959377 25961107 -75912062 + L2 LINE L2 1388 3289 -24 602 214 14 50 chr13 25961300 25961440 -75911729 + L1MC/D LINE L1 5425 5559 -2249 308 275 131 31 chr13 25961467 25962242 -75910927 + L1 LINE L1 3502 4470 -1676 2408 77 0 3 chr13 25962242 25962554 -75910615 + AluY SINE Alu 1 311 0 308 275 131 31 chr13 25962554 25962627 -75910542 + L1 LINE L1 4470 4534 -1612 268 300 130 10 chr13 25962814 25963107 -75910062 + L1 LINE L1 4874 5201 -945 26 30 0 0 chr13 25963560 25963593 -75909576 + AT_rich Low_complexity Low_complexity 1 33 0 3877 135 56 32 chr13 25966580 25966676 -75906493 + MER50 LTR ERV1 1 93 -641 2274 107 0 13 chr13 25966676 25966986 -75906183 - AluSx SINE Alu -6 306 1 3877 135 56 32 chr13 25966986 25967444 -75905725 + MER50 LTR ERV1 93 578 -156 2314 91 7 0 chr13 25967444 25967741 -75905428 - AluSp SINE Alu -14 299 1 3877 135 56 32 chr13 25967741 25967879 -75905290 + MER50 LTR ERV1 578 711 -23 496 271 18 60 chr13 25969495 25969661 -75903508 - MLT1I LTR MaLR -240 169 11 266 238 24 36 chr13 25969762 25969846 -75903323 - L2 LINE L2 -9 3263 3181 261 0 0 0 chr13 25969869 25969898 -75903271 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 270 0 0 0 chr13 25969897 25969927 -75903242 + (GA)n Simple_repeat Simple_repeat 2 31 0 238 319 34 88 chr13 25970018 25970222 -75902947 - L2 LINE L2 -568 2746 2554 583 197 43 0 chr13 25970535 25970652 -75902517 + L2 LINE L2 3192 3313 0 1884 161 154 15 chr13 25970803 25971193 -75901976 + LTR47A LTR ERVL 6 449 -3 333 0 0 0 chr13 25971193 25971230 -75901939 + (CA)n Simple_repeat Simple_repeat 2 38 0 282 56 0 0 chr13 25971230 25971266 -75901903 + (GA)n Simple_repeat Simple_repeat 1 36 0 191 322 0 0 chr13 25971618 25971677 -75901492 + MIR SINE MIR 64 122 -140 4295 142 31 46 chr13 25972879 25973042 -75900127 + LTR8A LTR ERV1 1 165 -562 2305 84 7 0 chr13 25973042 25973350 -75899819 + AluY SINE Alu 2 311 0 4295 142 31 46 chr13 25973350 25973924 -75899245 + LTR8A LTR ERV1 165 727 0 280 192 39 0 chr13 25974177 25974255 -75898914 + CT-rich Low_complexity Low_complexity 4 84 0 2391 53 7 10 chr13 25974504 25974805 -75898364 + AluY SINE Alu 1 300 -11 734 249 34 15 chr13 25974807 25975012 -75898157 + MER67C LTR ERV1 123 331 -379 1161 123 41 10 chr13 25975022 25975217 -75897952 + MER67C LTR ERV1 507 707 -3 487 211 64 9 chr13 25975218 25975327 -75897842 - L2 LINE L2 -26 3287 3173 347 265 37 52 chr13 25975754 25975890 -75897279 - L3 LINE CR1 -622 955 822 333 303 92 41 chr13 25975911 25976106 -75897063 + L3 LINE CR1 1178 1382 -195 181 235 101 128 chr13 25976145 25976294 -75896875 - MER5B DNA MER1_type -28 150 6 5036 156 34 37 chr13 25976444 25977366 -75895803 + MER49 LTR ERV1 5 923 0 315 204 0 0 chr13 25977366 25977420 -75895749 + MER94 DNA DNA 9 62 -72 528 279 13 6 chr13 25977852 25978010 -75895159 + MER114 LTR ERV 490 648 0 1102 215 42 105 chr13 25978714 25979301 -75893868 - MER39 LTR ERV1 0 684 1 3701 53 0 11 chr13 25979671 25980124 -75893045 + LTR7 LTR ERV1 1 448 -2 19073 90 26 15 chr13 25980126 25982909 -75890260 + HERVH LTR ERV1 1 2815 -4898 181 385 12 0 chr13 25983114 25983197 -75889972 - L2 LINE L2 -5 3267 3184 313 325 51 17 chr13 25983229 25983346 -75889823 - MIR3 SINE MIR -54 154 34 2107 133 0 13 chr13 25984068 25984370 -75888799 - AluSx SINE Alu -14 298 1 387 322 7 34 chr13 25984536 25984685 -75888484 + MIR SINE MIR 20 164 -98 2330 100 3 0 chr13 25984897 25985207 -75887962 - AluSx SINE Alu 0 312 2 596 100 0 0 chr13 25985596 25985676 -75887493 - MADE1 DNA Mariner 0 80 1 2455 158 28 125 chr13 25985804 25986444 -75886725 + MER70B LTR ERVL 1 578 0 696 238 62 33 chr13 25986488 25986698 -75886471 + MIR SINE MIR 47 262 0 1524 244 74 17 chr13 25986727 25987186 -75885983 + L1ME LINE L1 5324 5808 -362 890 316 104 13 chr13 25987303 25987677 -75885492 - MLT1J LTR MaLR -3 508 101 468 259 0 37 chr13 25987695 25987803 -75885366 + MLT1F LTR MaLR 1 104 -438 * 813 206 111 26 chr13 25987801 25987990 -75885179 + MLT1F1 LTR MaLR 363 567 0 1717 181 0 13 chr13 25988032 25988331 -75884838 + AluJb SINE Alu 5 299 -13 2501 244 48 57 chr13 25988586 25988881 -75884288 - L2 LINE L2 -355 2959 2663 1658 185 31 69 chr13 25988881 25989270 -75883899 + MLT1A2 LTR MaLR 1 374 0 2501 244 48 57 chr13 25989270 25989787 -75883382 - L2 LINE L2 -651 2663 2154 928 196 17 0 chr13 25990084 25990257 -75882912 - MER5B DNA MER1_type 0 178 3 2351 85 0 0 chr13 25990407 25990701 -75882468 + AluSq SINE Alu 3 296 -17 2239 128 0 0 chr13 25990983 25991296 -75881873 - AluSq SINE Alu 0 313 1 234 307 0 0 chr13 25992092 25992167 -75881002 + MIR SINE MIR 65 139 -123 2478 223 45 75 chr13 25992708 25993418 -75879751 + MER21B LTR ERV1 123 811 -52 22 0 0 0 chr13 25993544 25993566 -75879603 + AT_rich Low_complexity Low_complexity 1 22 0 1990 122 0 67 chr13 25994198 25994525 -75878644 + AluSx SINE Alu 1 305 -7 228 231 103 13 chr13 25994918 25994996 -75878173 + L2 LINE L2 1876 1960 -1354 484 51 0 0 chr13 25995021 25995080 -75878089 - Alu SINE Alu -10 300 242 1094 101 0 0 chr13 25995080 25995218 -75877951 - AluSg SINE Alu -172 138 1 335 122 110 12 chr13 25995532 25995614 -75877555 - MLT1L LTR MaLR -4 611 522 322 256 86 52 chr13 25995625 25995682 -75877487 + L1MC5 LINE L1 7479 7533 -428 1914 212 20 20 chr13 25995682 25996078 -75877091 - MSTD LTR MaLR 0 396 1 322 256 86 52 chr13 25996078 25996289 -75876880 + L1MC5 LINE L1 7533 7756 -205 305 232 0 12 chr13 25996478 25996580 -75876589 + L1MC5 LINE L1 7832 8011 -31 323 251 78 42 chr13 25996601 25996768 -75876401 - MLT1L LTR MaLR -60 555 383 560 195 55 8 chr13 25996769 25996897 -75876272 - MER94 DNA DNA 0 134 1 407 369 68 28 chr13 25997203 25997528 -75875641 + L2 LINE L2 2549 2886 -428 2022 123 0 36 chr13 25997812 25997977 -75875192 - AluSq SINE Alu -20 293 142 2491 77 0 3 chr13 25997977 25998287 -75874882 - AluSg1 SINE Alu 0 309 1 2022 123 0 36 chr13 25998287 25998423 -75874746 - AluSq SINE Alu -171 142 3 394 173 15 90 chr13 25998464 25998597 -75874572 - MER106B DNA MER1_type -3 1056 934 659 174 60 9 chr13 25999047 25999203 -75873966 - MIR SINE MIR 0 262 98 412 323 8 23 chr13 25999901 26000034 -75873135 + L2 LINE L2 3183 3313 0 606 180 18 9 chr13 26000437 26000548 -75872621 - MER101 LTR ERV1 0 474 363 553 128 12 0 chr13 26000537 26000623 -75872546 - MER101 LTR ERV1 -387 87 1 * 183 248 108 101 chr13 26000660 26000761 -75872408 - MIR SINE MIR -63 145 41 4680 97 16 75 chr13 26000761 26000935 -75872234 - LTR8 LTR ERV1 0 691 508 2356 79 10 3 chr13 26000935 26001240 -75871929 - AluSc SINE Alu -2 307 1 4680 97 16 75 chr13 26001240 26001797 -75871372 - LTR8 LTR ERV1 -183 508 3 183 248 108 101 chr13 26001797 26001824 -75871345 - MIR SINE MIR -167 41 16 1886 72 124 11 chr13 26002131 26002396 -75870773 + AluSg SINE Alu 1 295 -15 1214 97 103 0 chr13 26002570 26002745 -75870424 - AluSg SINE Alu -117 193 1 232 362 43 83 chr13 26003578 26003929 -75869240 - L2 LINE L2 -26 3246 2910 586 174 39 84 chr13 26003997 26004041 -75869128 - Charlie5 DNA MER1_type -5 2580 2536 2652 23 0 3 chr13 26004041 26004341 -75868828 - AluY SINE Alu -11 300 2 586 174 39 84 chr13 26004341 26004474 -75868695 - Charlie5 DNA MER1_type -49 2536 2411 1699 146 7 43 chr13 26004480 26004782 -75868387 + AluJo SINE Alu 9 299 -13 265 282 26 13 chr13 26004782 26004860 -75868309 - MIR SINE MIR -131 131 53 1919 252 54 44 chr13 26005209 26005330 -75867839 - MER20B DNA MER1_type -70 713 595 2054 129 3 0 chr13 26005330 26005624 -75867545 + AluSx SINE Alu 1 295 -17 1919 252 54 44 chr13 26005624 26006201 -75866968 - MER20B DNA MER1_type -188 595 8 243 131 16 66 chr13 26006422 26006483 -75866686 + FAM SINE Alu 121 178 -1 22 0 0 0 chr13 26006576 26006598 -75866571 + AT_rich Low_complexity Low_complexity 1 22 0 1415 80 0 0 chr13 26006822 26006998 -75866171 - L1PA11 LINE L1 0 6174 5999 2062 129 0 0 chr13 26007252 26007547 -75865622 - AluSx SINE Alu -17 295 1 394 250 58 33 chr13 26007589 26007709 -75865460 + L2 LINE L2 3191 3313 0 187 260 164 0 chr13 26008333 26008406 -75864763 + L2 LINE L2 2977 3061 -211 371 228 69 40 chr13 26008725 26008826 -75864343 + L2 LINE L2 3156 3259 -13 221 221 29 59 chr13 26009430 26009498 -75863671 + L2 LINE L2 3207 3272 0 372 266 0 0 chr13 26009910 26009989 -75863180 - MER58 DNA MER1_type 0 2420 2342 234 54 0 81 chr13 26009989 26010026 -75863143 + L1PA10 LINE L1 6098 6131 -37 186 316 34 60 chr13 26010175 26010292 -75862877 - L2 LINE L2 0 3313 3200 230 348 36 45 chr13 26010318 26010430 -75862739 + L2 LINE L2 3153 3263 -9 395 187 167 136 chr13 26010620 26010818 -75862351 - MER102b DNA MER1_type 0 341 138 513 274 65 60 chr13 26011181 26011396 -75861773 - MIR SINE MIR -32 230 15 1072 287 130 11 chr13 26011441 26011901 -75861268 - LTR33A LTR ERVL -7 516 2 23 0 0 0 chr13 26063498 26063521 -75809648 + AT_rich Low_complexity Low_complexity 1 23 0 1269 169 24 109 chr13 26064211 26064462 -75808707 + MLT1D LTR MaLR 1 219 -286 198 0 0 0 chr13 26064462 26064484 -75808685 + (GA)n Simple_repeat Simple_repeat 1 22 0 1269 169 24 109 chr13 26064484 26064563 -75808606 + MLT1D LTR MaLR 219 303 -202 368 311 37 62 chr13 26065431 26065592 -75807577 + MIR3 SINE MIR 31 187 -21 211 275 62 88 chr13 26065724 26065746 -75807423 + L2 LINE L2 3157 3178 -94 3218 175 60 15 chr13 26065746 26066341 -75806828 - LTR26E LTR ERV1 0 622 1 211 275 62 88 chr13 26066341 26066398 -75806771 + L2 LINE L2 3178 3234 -38 1713 128 13 58 chr13 26066534 26066847 -75806322 + MER4D LTR ERV1 1 299 -573 3178 163 125 29 chr13 26067042 26067705 -75805464 - LTR8A LTR ERV1 0 727 1 232 342 105 13 chr13 26067712 26067788 -75805381 - MIR SINE MIR -156 106 24 542 287 130 14 chr13 26067862 26068085 -75805084 - MIR SINE MIR -12 250 2 2131 112 84 35 chr13 26068408 26068755 -75804414 + THE1B LTR MaLR 1 364 0 180 321 107 0 chr13 26069500 26069584 -75803585 + L2 LINE L2 3201 3293 -20 252 231 167 0 chr13 26070218 26070296 -75802873 + L2 LINE L2 2640 2730 -584 861 301 36 42 chr13 26070434 26070820 -75802349 - HAL1 LINE L1 -1594 913 530 670 257 25 40 chr13 26070834 26071036 -75802133 - MER63A DNA MER1_type -11 199 1 1269 261 80 23 chr13 26071051 26071487 -75801682 - HAL1 LINE L1 -2001 506 46 663 188 0 55 chr13 26071680 26071808 -75801361 + FLAM_A SINE Alu 1 121 -12 336 260 68 62 chr13 26072754 26072900 -75800269 + MIR SINE MIR 34 180 -82 26 50 0 0 chr13 26073045 26073085 -75800084 + AT_rich Low_complexity Low_complexity 1 40 0 190 235 26 130 chr13 26073522 26073637 -75799532 + L2 LINE L2 2954 3056 -257 525 280 53 0 chr13 26073810 26073960 -75799209 + MIR SINE MIR 2 159 -103 387 250 29 10 chr13 26074717 26074821 -75798348 - MER103 DNA DNA -45 121 16 364 321 144 52 chr13 26075457 26076059 -75797110 + L2 LINE L2 2212 2869 -445 358 369 27 34 chr13 26076423 26076572 -75796597 + L2 LINE L2 3125 3272 0 2162 124 41 86 chr13 26077745 26078164 -75795005 + LTR19C LTR ERV1 380 779 0 3894 206 34 20 chr13 26078165 26078736 -75794433 - L1 LINE L1 -2839 3307 2714 1983 120 52 7 chr13 26078736 26079027 -75794142 - AluSq SINE Alu -9 304 1 3894 206 34 20 chr13 26079027 26079477 -75793692 - L1 LINE L1 -3432 2714 2272 12924 103 137 23 chr13 26079489 26081743 -75791426 - L1PBa LINE L1 -4349 2514 3 21 0 0 0 chr13 26081816 26081837 -75791332 + AT_rich Low_complexity Low_complexity 1 21 0 1299 92 54 0 chr13 26081957 26082141 -75791028 - AluSp SINE Alu -6 307 114 1272 205 86 37 chr13 26082262 26082691 -75790478 - LTR7 LTR ERV1 0 450 1 3323 132 24 4 chr13 26082691 26083237 -75789932 - HERVH LTR ERV1 0 7713 7157 309 200 0 0 chr13 26083230 26083285 -75789884 - HERVH LTR ERV1 -1697 6016 5962 * 4652 102 27 3 chr13 26083305 26083979 -75789190 - HERVH LTR ERV1 -2803 4910 4221 1422 134 0 5 chr13 26083977 26084193 -75788976 - HERVH LTR ERV1 -3423 4290 4076 * 1162 181 60 32 chr13 26084193 26084441 -75788728 - MSTB LTR MaLR -168 258 4 1099 283 114 23 chr13 26084662 26085090 -75788079 - LTR33 LTR ERVL -52 469 3 2360 107 0 0 chr13 26085300 26085609 -75787560 - AluSq SINE Alu -4 309 1 2183 103 7 3 chr13 26085609 26085900 -75787269 - AluSx SINE Alu -20 292 1 331 278 9 28 chr13 26085926 26086034 -75787135 - MIR SINE MIR -11 251 146 356 246 82 33 chr13 26086118 26086335 -75786834 - L1M3 LINE L1 -734 5437 5210 1185 247 147 28 chr13 26087158 26087615 -75785554 - MLT1J LTR MaLR 0 511 1 1702 184 78 9 chr13 26088865 26089213 -75783956 - MLT1D LTR MaLR -133 372 1 2081 83 28 7 chr13 26089220 26089509 -75783660 - AluY SINE Alu -16 295 1 395 252 107 0 chr13 26091882 26091985 -75781184 - L2 LINE L2 -1 3271 3158 236 216 0 20 chr13 26092365 26092416 -75780753 + L2 LINE L2 3222 3271 -1 763 306 192 21 chr13 26092925 26093569 -75779600 - L2 LINE L2 -8 3305 2557 461 232 134 75 chr13 26094772 26095162 -75778007 - L1MEd LINE L1 -1037 1453 947 1675 156 4 4 chr13 26095204 26095454 -75777715 - AluSq SINE Alu -63 250 1 249 305 76 44 chr13 26095466 26095715 -75777454 - HAL1 LINE L1 -1429 1078 822 23 68 0 0 chr13 26096446 26096490 -75776679 + AT_rich Low_complexity Low_complexity 1 44 0 902 216 31 108 chr13 26097394 26097653 -75775516 - MER8 DNA MER2_type 0 239 1 1897 123 18 3 chr13 26098267 26098551 -75774618 - AluSx SINE Alu -24 288 1 241 188 62 0 chr13 26098855 26098903 -75774266 + L2 LINE L2 3222 3272 0 1116 251 244 17 chr13 26099280 26099866 -75773303 + L2 LINE L2 1743 2461 -853 723 268 117 0 chr13 26099871 26100076 -75773093 - LTR16A LTR ERVL -5 445 217 308 266 89 0 chr13 26100077 26100156 -75773013 - L2 LINE L2 -1112 2202 2117 455 309 73 0 chr13 26100156 26100334 -75772835 - LTR16A LTR ERVL -242 208 18 1168 267 135 3 chr13 26100343 26100729 -75772440 + L2 LINE L2 2450 2886 -428 188 326 10 82 chr13 26100865 26100963 -75772206 - MIR SINE MIR -102 106 16 216 0 0 0 chr13 26101454 26101478 -75771691 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr13 26101975 26102008 -75771161 + AT_rich Low_complexity Low_complexity 1 33 0 475 265 146 64 chr13 26102477 26102664 -75770505 + MIR SINE MIR 13 222 -40 2677 141 53 0 chr13 26102664 26103118 -75770051 - L1PA13 LINE L1 0 6163 5686 475 265 146 64 chr13 26103118 26103149 -75770020 + MIR SINE MIR 222 249 -13 258 369 85 0 chr13 26103241 26103382 -75769787 + MIR SINE MIR 104 256 -6 970 171 62 0 chr13 26103822 26103998 -75769171 - MER6B DNA MER2_type -1 209 23 2165 80 14 3 chr13 26104035 26104322 -75768847 - AluY SINE Alu -20 291 2 2508 96 11 14 chr13 26104376 26104741 -75768428 - THE1B LTR MaLR 0 364 1 312 241 0 0 chr13 26105431 26105510 -75767659 + (TA)n Simple_repeat Simple_repeat 1 79 0 2495 66 0 0 chr13 26105750 26106053 -75767116 - AluY SINE Alu -8 303 1 372 330 79 23 chr13 26106883 26107098 -75766071 - MIR SINE MIR -30 232 6 356 252 122 46 chr13 26107113 26107244 -75765925 - MIR SINE MIR -65 197 57 637 236 146 6 chr13 26107489 26107667 -75765502 - MIR SINE MIR -17 245 43 2168 95 4 0 chr13 26107669 26107942 -75765227 + AluSg SINE Alu 2 275 -35 231 245 0 0 chr13 26109870 26109923 -75763246 - Charlie4 DNA MER1_type -1908 53 1 233 242 66 55 chr13 26110697 26110788 -75762381 + MER5C DNA MER1_type 14 105 -219 236 278 44 22 chr13 26110827 26110917 -75762252 + MER5C DNA MER1_type 233 324 0 * 527 305 30 30 chr13 26110917 26111106 -75762063 - L3 LINE CR1 -47 1530 1342 308 294 76 34 chr13 26111334 26111453 -75761716 + L3 LINE CR1 269 392 -1185 852 319 146 22 chr13 26111809 26112375 -75760794 - L2 LINE L2 -1 3312 2688 564 200 0 0 chr13 26112462 26112562 -75760607 + Charlie1a DNA MER1_type 102 201 -1254 245 169 220 68 chr13 26112606 26112641 -75760528 + L1M4 LINE L1 4972 5000 -1146 782 264 49 59 chr13 26112641 26113047 -75760122 - MER93a LTR ERV1 0 402 1 245 169 220 68 chr13 26113047 26113129 -75760040 + L1M4 LINE L1 5000 5107 -1039 686 268 48 67 chr13 26113142 26113285 -75759884 - L1M4 LINE L1 -2414 3732 3588 1995 97 22 4 chr13 26113285 26113554 -75759615 - AluY SINE Alu -3 308 35 686 268 48 67 chr13 26113554 26113660 -75759509 - L1M4 LINE L1 -2558 3588 3482 2313 96 0 10 chr13 26113660 26113974 -75759195 - AluSx SINE Alu -1 311 1 686 268 48 67 chr13 26113974 26114201 -75758968 - L1M4 LINE L1 -2664 3482 3264 1306 277 106 10 chr13 26114224 26115062 -75758107 - L1M4 LINE L1 -2998 3148 2131 192 234 0 0 chr13 26115066 26115113 -75758056 + (TA)n Simple_repeat Simple_repeat 1 47 0 1530 187 0 8 chr13 26115251 26115513 -75757656 + AluJo SINE Alu 36 295 -17 2575 169 26 61 chr13 26115922 26115985 -75757184 - Charlie1 DNA MER1_type -76 2685 2621 1695 194 3 16 chr13 26115985 26116295 -75756874 - AluJb SINE Alu 0 312 7 2575 169 26 61 chr13 26116295 26116883 -75756286 - Charlie1 DNA MER1_type -140 2621 2057 950 200 17 0 chr13 26116883 26117063 -75756106 + MER5A DNA MER1_type 7 189 0 1225 319 133 33 chr13 26117746 26118593 -75754576 - L2 LINE L2 -685 2629 1698 715 262 50 130 chr13 26118699 26119122 -75754047 + L3 LINE CR1 796 1184 -393 386 275 125 0 chr13 26119122 26119242 -75753927 - L2 LINE L2 -2 3311 3177 1057 230 39 30 chr13 26119255 26119666 -75753503 + MLT1H LTR MaLR 3 539 -10 1098 289 113 42 chr13 26119685 26120242 -75752927 - L2 LINE L2 -164 3149 2530 2360 78 3 0 chr13 26120242 26120535 -75752634 + AluSp SINE Alu 1 294 -19 1098 289 113 42 chr13 26120535 26120672 -75752497 - L2 LINE L2 -783 2530 2404 309 290 77 13 chr13 26120668 26120823 -75752346 + L3 LINE CR1 1220 1384 -193 * 202 224 24 106 chr13 26120843 26120928 -75752241 - L2 LINE L2 -6 3307 3230 407 250 80 0 chr13 26120973 26121073 -75752096 + L3 LINE CR1 1467 1574 -3 585 174 42 7 chr13 26121138 26121282 -75751887 - L1MB8 LINE L1 -3 6175 6027 4341 205 81 60 chr13 26121308 26122745 -75750424 - L1M4 LINE L1 -1325 4821 3355 389 240 0 20 chr13 26122913 26123013 -75750156 - MER63 DNA MER1_type -271 789 692 2212 107 10 0 chr13 26123014 26123436 -75749733 + AluSp SINE Alu 1 425 0 307 150 0 190 chr13 26123439 26123539 -75749630 - MER63 DNA MER1_type -355 707 1 1097 278 75 21 chr13 26125573 26125962 -75747207 + HERV16 LTR ERVL 742 1151 -3845 2457 254 110 54 chr13 26126345 26126529 -75746640 + HAL1 LINE L1 798 970 -1537 1975 146 0 10 chr13 26126529 26126831 -75746338 + AluSx SINE Alu 1 299 -13 2457 254 110 54 chr13 26126831 26128084 -75745085 + HAL1 LINE L1 970 2319 -188 939 135 7 7 chr13 26128087 26128228 -75744941 + AluJb SINE Alu 1 141 -171 3111 101 26 0 chr13 26128357 26128781 -75744388 + MLT2A2 LTR ERVL 19 453 0 227 200 0 13 chr13 26128822 26128897 -75744272 + (CTA)n Simple_repeat Simple_repeat 1 74 0 2020 156 35 24 chr13 26129577 26129948 -75743221 + THE1C LTR MaLR 1 375 0 425 284 7 20 chr13 26130198 26130346 -75742823 - L2 LINE L2 -1 3312 3167 231 103 0 0 chr13 26130622 26130651 -75742518 + (A)n Simple_repeat Simple_repeat 1 29 0 225 0 0 0 chr13 26130656 26130681 -75742488 + (TA)n Simple_repeat Simple_repeat 1 25 0 2711 119 17 4 chr13 26130781 26131294 -75741875 - L1P5 LINE L1 -472 5679 5160 612 133 250 0 chr13 26131362 26131490 -75741679 + AluSq SINE Alu 134 293 -20 806 253 218 7 chr13 26131510 26131913 -75741256 - L1ME LINE L1 -2272 3808 3321 430 185 167 43 chr13 26131986 26132148 -75741021 - L1ME LINE L1 -3225 2855 2674 422 259 210 13 chr13 26132155 26132379 -75740790 - MER5C DNA MER1_type -56 268 1 1122 284 62 6 chr13 26132388 26132859 -75740310 - L1ME LINE L1 -3372 2708 2212 1018 206 45 45 chr13 26132913 26133199 -75739970 - L1ME1 LINE L1 -5 6161 5876 261 272 58 53 chr13 26133201 26133407 -75739762 - L1ME LINE L1 -5862 208 2 2122 148 3 0 chr13 26133547 26133857 -75739312 - AluJb SINE Alu -1 311 1 288 0 0 0 chr13 26136393 26136425 -75736744 + (CA)n Simple_repeat Simple_repeat 2 33 0 252 213 16 0 chr13 26136710 26136771 -75736398 + L3b LINE CR1 1135 1196 -387 220 161 0 54 chr13 26136818 26136874 -75736295 - L2 LINE L2 0 3313 3261 959 204 43 14 chr13 26137455 26137666 -75735503 - MER20 DNA MER1_type -1 218 2 227 189 271 3 chr13 26137951 26138040 -75735129 + L2 LINE L2 3151 3313 0 260 246 149 9 chr13 26138444 26138558 -75734611 + MIR SINE MIR 24 153 -109 1382 62 6 0 chr13 26138561 26138737 -75734432 + L1PA5 LINE L1 5974 6150 -4 479 255 103 37 chr13 26138905 26139271 -75733898 - MLT1G1 LTR MaLR -59 536 67 212 352 0 0 chr13 26139574 26139628 -75733541 + L2 LINE L2 3151 3204 -68 566 266 69 6 chr13 26141483 26141656 -75731513 - MIR SINE MIR -43 219 36 1102 87 0 0 chr13 26144349 26144487 -75728682 - AluSp/q SINE Alu -17 296 159 188 257 68 40 chr13 26146331 26146405 -75726764 + MIR SINE MIR 45 120 -88 405 314 73 14 chr13 26146445 26146665 -75726504 + MIR SINE MIR 20 252 -10 613 170 63 6 chr13 26147123 26147282 -75725887 - Charlie4 DNA MER1_type -54 1907 1740 335 281 260 5 chr13 26147841 26148037 -75725132 + MIR SINE MIR 6 251 -11 444 232 179 0 chr13 26148065 26148216 -75724953 + MER5B DNA MER1_type 1 178 0 633 247 13 0 chr13 26148691 26148841 -75724328 + MER5A DNA MER1_type 13 164 -25 451 252 43 36 chr13 26148857 26148996 -75724173 + MIR SINE MIR 9 148 -114 1679 187 82 12 chr13 26149025 26149195 -75723974 + Charlie4a DNA MER1_type 17 174 -1787 2624 59 0 0 chr13 26149195 26149500 -75723669 - AluY SINE Alu -2 309 5 1679 187 82 12 chr13 26149500 26149741 -75723428 + Charlie4a DNA MER1_type 174 457 -51 321 194 30 0 chr13 26150247 26150314 -75722855 - L2 LINE L2 -7 3306 3238 1804 211 27 17 chr13 26150430 26150837 -75722332 + MLT2D LTR ERVL 4 414 0 432 263 88 39 chr13 26151075 26151280 -75721889 - MIR SINE MIR -11 251 37 277 315 19 19 chr13 26151723 26151831 -75721338 - L3 LINE CR1 -1150 427 320 317 321 0 70 chr13 26153027 26153214 -75719955 + LTR67 LTR ERVL 13 186 -371 397 264 93 21 chr13 26153312 26153505 -75719664 + LTR67 LTR ERVL 351 557 0 258 240 0 0 chr13 26153726 26153776 -75719393 + MER3 DNA MER1_type 41 90 -119 * 313 118 0 105 chr13 26153738 26153803 -75719366 - MER3 DNA MER1_type -5 204 146 5336 65 20 39 chr13 26153803 26154037 -75719132 + L1MA1 LINE L1 5554 5791 -511 2194 110 0 0 chr13 26154037 26154345 -75718824 + AluSx SINE Alu 1 308 0 5336 65 20 39 chr13 26154345 26154872 -75718297 + L1MA1 LINE L1 5791 6302 0 607 271 6 0 chr13 26154893 26155059 -75718110 - MER3 DNA MER1_type -42 167 1 212 242 316 0 chr13 26155498 26155593 -75717576 + L2 LINE L2 3137 3261 -11 298 291 100 0 chr13 26155894 26156004 -75717165 + MIR SINE MIR 126 246 -16 21 0 0 0 chr13 26156285 26156306 -75716863 + AT_rich Low_complexity Low_complexity 1 21 0 206 132 0 26 chr13 26156471 26156509 -75716660 + (TCTCCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr13 26156725 26156752 -75716417 + (TC)n Simple_repeat Simple_repeat 2 28 0 312 278 24 18 chr13 26156754 26156923 -75716246 + (TCTCTG)n Simple_repeat Simple_repeat 2 171 0 201 337 23 0 chr13 26157385 26157471 -75715698 - MIR SINE MIR -97 165 78 360 43 0 0 chr13 26159211 26159257 -75713912 + (CA)n Simple_repeat Simple_repeat 1 46 0 4111 138 5 20 chr13 26160219 26160864 -75712305 - MER41B LTR ERV1 0 635 1 255 203 34 0 chr13 26161939 26161998 -75711171 + tRNA-Ile-ATT tRNA tRNA 14 74 -3 911 240 71 83 chr13 26162476 26162927 -75710242 - L2 LINE L2 -2 3311 2851 4815 129 30 13 chr13 26162927 26163697 -75709472 - LTR39 LTR ERV1 0 783 1 911 240 71 83 chr13 26163697 26163796 -75709373 - L2 LINE L2 -462 2851 2752 412 159 0 45 chr13 26164661 26164749 -75708420 - MER53 DNA DNA -3 186 103 2461 86 0 0 chr13 26164750 26165051 -75708118 + AluSq SINE Alu 1 301 -12 2290 104 0 7 chr13 26165061 26165370 -75707799 + AluSq SINE Alu 1 307 -6 227 151 19 19 chr13 26165385 26165438 -75707731 - MER53 DNA DNA -3 186 134 1175 126 0 91 chr13 26165542 26165741 -75707428 - AluSg/x SINE Alu -34 278 98 643 204 22 0 chr13 26165754 26165891 -75707278 - MER53 DNA DNA -44 145 6 363 359 21 11 chr13 26166577 26166811 -75706358 - MIR SINE MIR -14 248 14 2262 103 7 0 chr13 26168559 26168859 -75704310 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr13 26169542 26169571 -75703598 + AT_rich Low_complexity Low_complexity 1 29 0 330 243 201 14 chr13 26169771 26169915 -75703254 - MER5A DNA MER1_type -2 187 17 1568 190 96 25 chr13 26171557 26171993 -75701176 + MLT1C LTR MaLR 1 467 0 193 274 65 0 chr13 26172089 26172151 -75701018 + L2 LINE L2 3207 3272 0 548 276 131 0 chr13 26175570 26175769 -75697400 - MIR SINE MIR -1 261 37 227 323 196 5 chr13 26176023 26176243 -75696926 + L2 LINE L2 2576 2837 -477 1764 174 0 17 chr13 26176363 26176662 -75696507 + AluJo SINE Alu 1 294 -18 836 221 43 14 chr13 26176662 26176859 -75696310 - MLT1D LTR MaLR -299 206 1 207 271 0 0 chr13 26176897 26176945 -75696224 + L2 LINE L2 3240 3287 -26 185 259 17 17 chr13 26177512 26177570 -75695599 + MIR SINE MIR 152 209 -53 1324 199 112 13 chr13 26178160 26178472 -75694697 + MER2 DNA MER2_type 1 343 -1 438 300 0 0 chr13 26178518 26178618 -75694551 - L3 LINE CR1 -7 1570 1471 266 300 11 0 chr13 26179111 26179201 -75693968 - L1ME LINE L1 -274 5847 5757 450 313 21 26 chr13 26180502 26180694 -75692475 + MLT1K LTR MaLR 124 314 -274 1729 215 39 35 chr13 26181901 26182361 -75690808 - MLT1C LTR MaLR 0 467 6 340 315 18 9 chr13 26182562 26182673 -75690496 + MER81 DNA DNA 3 114 0 186 373 7 20 chr13 26183756 26183906 -75689263 + L2 LINE L2 2943 3090 -182 206 252 48 68 chr13 26184196 26184299 -75688870 + L2 LINE L2 3171 3271 -1 487 277 54 36 chr13 26184819 26184985 -75688184 + MIR3 SINE MIR 3 171 -37 312 295 36 0 chr13 26185516 26185628 -75687541 - MLT1L LTR MaLR -4 611 496 354 266 52 88 chr13 26185657 26185849 -75687320 - MLT1L LTR MaLR -204 411 227 791 356 21 23 chr13 26186655 26187082 -75686087 - LTR16B LTR ERVL 0 464 39 617 247 165 40 chr13 26187786 26188102 -75685067 - MLT1L LTR MaLR -10 554 240 22 0 0 0 chr13 26188792 26188814 -75684355 + AT_rich Low_complexity Low_complexity 1 22 0 11346 27 0 0 chr13 26189804 26191108 -75682061 - L1PA2 LINE L1 -1201 4945 3642 8275 19 0 0 chr13 26191108 26192308 -75680861 + L1PA2 LINE L1 4952 6151 -4 355 337 122 6 chr13 26192316 26192497 -75680672 + MIR SINE MIR 33 234 -28 2176 113 0 17 chr13 26192811 26193112 -75680057 - AluSg SINE Alu -14 296 1 29 47 0 0 chr13 26193289 26193332 -75679837 + AT_rich Low_complexity Low_complexity 1 43 0 7782 85 4 0 chr13 26193332 26195116 -75678053 - L1PA7 LINE L1 -5 6149 4358 1302 224 97 63 chr13 26196417 26196922 -75676247 - MER39 LTR ERV1 0 707 51 2838 231 76 22 chr13 26196948 26197167 -75676002 - MER72 LTR ERV1 0 722 516 2125 120 0 17 chr13 26197167 26197466 -75675703 + AluSq SINE Alu 1 294 -19 2838 231 76 22 chr13 26197466 26197931 -75675238 - MER72 LTR ERV1 -206 516 1 404 278 63 16 chr13 26197954 26198080 -75675089 + L2 LINE L2 3182 3313 0 231 321 112 15 chr13 26198410 26198544 -75674625 + MER20B DNA MER1_type 29 175 -608 2234 108 0 13 chr13 26198581 26198887 -75674282 - AluY SINE Alu -8 303 2 182 229 0 16 chr13 26198961 26199022 -75674147 + CT-rich Low_complexity Low_complexity 1 60 0 332 314 0 79 chr13 26199353 26199493 -75673676 + LTR33A LTR ERVL 5 133 -390 598 271 71 28 chr13 26199510 26199765 -75673404 + LTR33A LTR ERVL 250 515 -8 300 277 193 0 chr13 26199788 26199907 -75673262 - MIR SINE MIR -119 143 2 268 303 156 0 chr13 26200073 26200195 -75672974 + L3 LINE CR1 400 540 -1037 1956 124 67 0 chr13 26201545 26201828 -75671341 - AluSq SINE Alu -9 304 3 1115 221 109 22 chr13 26202050 26202416 -75670753 - MLT1C LTR MaLR -69 398 1 381 243 201 14 chr13 26204058 26204202 -75668967 + MER5A DNA MER1_type 17 187 -2 22 35 0 0 chr13 26204403 26204432 -75668737 + AT_rich Low_complexity Low_complexity 1 29 0 2226 104 7 0 chr13 26205115 26205413 -75667756 - AluSx SINE Alu -10 302 3 635 230 119 28 chr13 26205453 26205817 -75667352 + MLT1J2 LTR MaLR 13 396 -13 733 347 137 24 chr13 26205831 26206453 -75666716 + L3 LINE CR1 553 1244 -333 2382 188 25 4 chr13 26206460 26206934 -75666235 - L1MB7 LINE L1 -5 6179 5696 1571 113 0 0 chr13 26206964 26207168 -75666001 - L1PA8A LINE L1 -17 6114 5911 2211 176 44 26 chr13 26207172 26207216 -75665953 - L1MB7 LINE L1 -488 5690 5648 1980 158 40 53 chr13 26207216 26207596 -75665573 + THE1C LTR MaLR 1 375 0 2211 176 44 26 chr13 26207596 26208340 -75664829 - L1MB7 LINE L1 -530 5648 4890 2981 214 19 6 chr13 26208360 26209032 -75664137 - L1MB7 LINE L1 -3014 3132 2452 274 217 14 0 chr13 26209041 26209110 -75664059 - L1MEc LINE L1 -1542 4864 4795 5621 124 51 15 chr13 26209124 26210001 -75663168 - HSMAR2 DNA Mariner -2 1300 392 1176 123 22 0 chr13 26209988 26210167 -75663002 - HSMAR2 DNA Mariner -1119 183 1 * 903 282 63 36 chr13 26210168 26210722 -75662447 - L1MEc LINE L1 -1627 4779 4211 367 294 139 21 chr13 26210976 26211214 -75661955 + Charlie8 DNA MER1_type 1 266 -2151 1510 95 3 165 chr13 26212473 26212800 -75660369 + LTR12 LTR ERV1 1 274 -440 243 260 70 0 chr13 26212802 26212902 -75660267 + LTR30 LTR ERV1 537 643 -79 529 172 10 0 chr13 26212904 26213003 -75660166 + LTR12 LTR ERV1 615 714 0 944 292 123 6 chr13 26213722 26214236 -75658933 - L1MEc LINE L1 -2299 4107 3534 770 223 36 86 chr13 26214283 26214503 -75658666 + MER58A DNA MER1_type 4 212 -12 1714 255 81 50 chr13 26214523 26215583 -75657586 - L1MEc LINE L1 -2923 3483 2391 341 328 20 55 chr13 26215878 26215990 -75657179 - L1MEc LINE L1 -4576 2011 1908 2296 111 0 13 chr13 26215990 26216305 -75656864 + AluSq SINE Alu 1 311 -2 341 328 20 55 chr13 26216305 26216393 -75656776 - L1MEc LINE L1 -4679 1908 1818 324 327 40 15 chr13 26216559 26216758 -75656411 - L1MEc LINE L1 -4936 1460 1257 1079 150 0 0 chr13 26216758 26216918 -75656251 - FRAM SINE Alu -4 172 13 2302 156 28 49 chr13 26216975 26217448 -75655721 - L1MB8 LINE L1 0 6178 5716 208 246 14 29 chr13 26217580 26217649 -75655520 + T-rich Low_complexity Low_complexity 2 69 0 233 88 29 0 chr13 26217737 26217771 -75655398 - L1MEc LINE L1 -5489 907 873 265 277 39 39 chr13 26218091 26218221 -75654948 - L1MEc LINE L1 -5987 409 280 876 292 87 5 chr13 26218254 26218645 -75654524 + L1ME4a LINE L1 5502 5924 -197 314 201 97 65 chr13 26218662 26218816 -75654353 + L1ME4a LINE L1 5963 6121 0 2034 143 23 7 chr13 26219254 26219561 -75653608 + AluSx SINE Alu 1 312 0 266 107 196 0 chr13 26220445 26220501 -75652668 - L1MEc LINE L1 -5597 812 746 410 252 17 28 chr13 26220509 26220631 -75652538 - L1MEc LINE L1 -5753 656 460 682 232 57 11 chr13 26220654 26220831 -75652338 - L1MEc LINE L1 -6223 186 2 1223 284 147 8 chr13 26221450 26222194 -75650975 + L2 LINE L2 2461 3312 -1 2065 198 111 20 chr13 26222491 26223019 -75650150 - MLT1E2 LTR MaLR -1 625 72 223 348 0 0 chr13 26223519 26223588 -75649581 - MIR SINE MIR -169 93 25 2390 150 23 71 chr13 26224686 26225167 -75648002 + LTR32 LTR ERVL 14 471 0 413 353 0 0 chr13 26225355 26225471 -75647698 + L2 LINE L2 3153 3268 -4 245 328 23 8 chr13 26226448 26226579 -75646590 + CT-rich Low_complexity Low_complexity 1 133 0 558 343 33 6 chr13 26226591 26226772 -75646397 + MER91A DNA MER1_type 10 195 -1 307 246 29 0 chr13 26227285 26227354 -75645815 + L2 LINE L2 3201 3271 -1 207 181 169 60 chr13 26229381 26229464 -75643705 - MIR SINE MIR -81 127 36 2576 153 9 41 chr13 26230362 26230825 -75642344 + MLT2C2 LTR ERVL 2 449 -15 444 201 60 75 chr13 26230888 26231055 -75642114 + MIR SINE MIR 30 192 -61 2012 116 0 0 chr13 26231114 26231381 -75641788 + AluSx SINE Alu 31 297 -15 34 0 0 0 chr13 26232133 26232167 -75641002 + AT_rich Low_complexity Low_complexity 1 34 0 1013 181 88 15 chr13 26232186 26232390 -75640779 + MER20 DNA MER1_type 1 219 0 242 266 103 7 chr13 26233309 26233405 -75639764 - MIR3 SINE MIR -104 104 12 209 284 136 0 chr13 26233502 26233583 -75639586 + MIR SINE MIR 62 153 -109 391 265 122 0 chr13 26233752 26233899 -75639270 + MER103 DNA DNA 2 166 0 2311 136 67 84 chr13 26234158 26234620 -75638549 - LTR32 LTR ERVL 0 471 18 482 294 51 68 chr13 26234627 26234920 -75638249 + MLT1H LTR MaLR 249 536 -13 321 279 109 82 chr13 26234979 26235319 -75637850 - MLT1-int LTR MaLR 0 1371 1023 458 202 56 0 chr13 26236270 26236359 -75636810 - MLT1H LTR MaLR -13 536 443 2144 119 3 0 chr13 26236752 26237047 -75636122 + AluSx SINE Alu 2 297 -15 253 354 0 14 chr13 26237385 26237529 -75635640 + (TG)n Simple_repeat Simple_repeat 1 142 0 199 225 188 0 chr13 26238395 26238475 -75634694 - MIR SINE MIR -83 179 85 2320 97 0 3 chr13 26238624 26238924 -75634245 + AluSg SINE Alu 1 299 -11 293 326 66 22 chr13 26240628 26240809 -75632360 - MIR SINE MIR -34 228 40 1822 188 47 21 chr13 26241562 26241578 -75631591 + L1MB4 LINE L1 5788 5802 -378 2123 108 3 66 chr13 26241578 26241911 -75631258 - AluSx SINE Alu 0 312 1 1822 188 47 21 chr13 26241911 26242277 -75630892 + L1MB4 LINE L1 5802 6180 0 233 242 154 11 chr13 26242584 26242675 -75630494 - L2 LINE L2 -179 3093 2990 502 314 32 5 chr13 26243379 26243564 -75629605 + MIR SINE MIR 3 192 -70 210 256 0 0 chr13 26243628 26243671 -75629498 + L3 LINE CR1 1528 1570 -7 2181 93 29 35 chr13 26244468 26244781 -75628388 - AluSx SINE Alu -1 311 1 2043 136 30 0 chr13 26246210 26246512 -75626657 - AluSx SINE Alu -1 311 1 855 241 68 4 chr13 26247232 26247468 -75625701 + MIR SINE MIR 7 257 -5 207 290 241 35 chr13 26248236 26248381 -75624788 - MIR3 SINE MIR -12 196 22 414 265 98 7 chr13 26249044 26249331 -75623838 - L1M4 LINE L1 -2714 3432 3120 1631 194 0 25 chr13 26249339 26249654 -75623515 - AluJb SINE Alu -5 307 1 822 236 70 16 chr13 26249716 26250030 -75623139 - L1M4 LINE L1 -3132 3014 2684 378 0 0 0 chr13 26250675 26250717 -75622452 + (TG)n Simple_repeat Simple_repeat 2 43 0 242 316 19 19 chr13 26250718 26250876 -75622293 + GA-rich Low_complexity Low_complexity 2 159 0 493 234 48 6 chr13 26251198 26251365 -75621804 + L1ME4a LINE L1 5946 6119 -2 1975 87 4 19 chr13 26251472 26251736 -75621433 + AluSq SINE Alu 46 305 -8 326 290 93 16 chr13 26252917 26253100 -75620069 + MIR SINE MIR 16 212 -50 5526 164 17 19 chr13 26254762 26256648 -75616521 + L1PA16 LINE L1 4279 6155 -11 2213 125 0 13 chr13 26256648 26256959 -75616210 + AluSx SINE Alu 1 307 -5 631 299 111 29 chr13 26257927 26258369 -75614800 + HAL1 LINE L1 812 1289 -1218 462 285 14 0 chr13 26258684 26258828 -75614341 + (CACCAT)n Simple_repeat Simple_repeat 4 149 0 180 235 0 0 chr13 26258922 26258990 -75614179 + (CCA)n Simple_repeat Simple_repeat 1 68 0 229 345 17 35 chr13 26258996 26259170 -75613999 + (CACCAT)n Simple_repeat Simple_repeat 3 173 0 * 306 368 6 6 chr13 26259076 26259242 -75613927 + (CCA)n Simple_repeat Simple_repeat 1 166 0 476 320 6 0 chr13 26259272 26259450 -75613719 + (CCA)n Simple_repeat Simple_repeat 2 180 0 399 89 0 0 chr13 26260769 26260825 -75612344 + (T)n Simple_repeat Simple_repeat 1 56 0 315 228 32 106 chr13 26262755 26262878 -75610291 - MIR SINE MIR -70 192 79 355 219 23 78 chr13 26263010 26263138 -75610031 - MER5A DNA MER1_type -32 157 37 493 216 147 59 chr13 26263144 26263172 -75609997 + MIR SINE MIR 9 33 -229 2147 99 0 10 chr13 26263172 26263464 -75609705 + AluSg SINE Alu 1 289 -21 493 216 147 59 chr13 26263464 26263639 -75609530 + MIR SINE MIR 33 230 -32 400 264 189 0 chr13 26264222 26264370 -75608799 - MIR SINE MIR -73 189 14 263 272 111 12 chr13 26264932 26265013 -75608156 + MIR3 SINE MIR 66 154 -54 680 260 98 6 chr13 26265203 26265376 -75607793 - MIR SINE MIR -21 241 53 1974 144 3 0 chr13 26265602 26265893 -75607276 + AluJo SINE Alu 1 292 -20 188 182 23 0 chr13 26267330 26267374 -75605795 + GA-rich Low_complexity Low_complexity 1 45 0 351 270 37 37 chr13 26267392 26267555 -75605614 + GA-rich Low_complexity Low_complexity 2 164 0 267 79 0 0 chr13 26269638 26269676 -75603493 + (CA)n Simple_repeat Simple_repeat 2 39 0 1674 138 40 0 chr13 26272232 26272509 -75600660 + L1PA16 LINE L1 5692 5982 -184 924 216 0 0 chr13 26272610 26272795 -75600374 + L1PA16 LINE L1 5982 6166 0 21 36 0 0 chr13 26273430 26273458 -75599711 + AT_rich Low_complexity Low_complexity 1 28 0 1573 129 0 4 chr13 26273653 26273894 -75599275 - L1MA4 LINE L1 -11 6289 6050 234 0 0 0 chr13 26275455 26275481 -75597688 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr13 26275773 26275794 -75597375 + AT_rich Low_complexity Low_complexity 1 21 0 1644 273 182 37 chr13 26276075 26276299 -75596870 - L2 LINE L2 -41 3272 3082 2338 135 28 28 chr13 26276299 26276663 -75596506 + THE1B LTR MaLR 1 364 0 1644 273 182 37 chr13 26276663 26277856 -75595313 - L2 LINE L2 -231 3082 1652 214 181 114 133 chr13 26277928 26278033 -75595136 - MIR3 SINE MIR -24 184 82 256 357 105 32 chr13 26278882 26279159 -75594010 + L2 LINE L2 2879 3175 -97 1805 148 7 30 chr13 26279286 26279591 -75593578 - AluJo SINE Alu -11 301 4 2357 97 3 0 chr13 26282811 26283111 -75590058 + AluSx SINE Alu 1 301 -11 22 88 0 0 chr13 26283907 26283964 -75589205 + AT_rich Low_complexity Low_complexity 1 57 0 234 324 45 0 chr13 26287997 26288108 -75585061 - L2 LINE L2 -914 2400 2285 748 195 96 7 chr13 26288128 26288341 -75584828 + LTR40c LTR ERVL 30 268 -197 196 292 163 50 chr13 26289386 26289687 -75583482 + L2 LINE L2 1755 2089 -1225 314 327 29 0 chr13 26289943 26290047 -75583122 + MIR SINE MIR 47 153 -55 2342 114 0 0 chr13 26290214 26290520 -75582649 + AluSx SINE Alu 1 306 -6 791 161 0 0 chr13 26290823 26290947 -75582222 - FLAM_C SINE Alu -8 125 2 2724 13 0 0 chr13 26291148 26291450 -75581719 - AluYa5 SINE Alu -9 302 1 22 35 0 0 chr13 26291455 26291484 -75581685 + AT_rich Low_complexity Low_complexity 1 29 0 387 246 159 55 chr13 26291947 26292167 -75581002 - L1ME4a LINE L1 0 6121 5879 260 262 138 71 chr13 26293265 26293490 -75579679 - MIR SINE MIR 0 262 23 203 231 15 15 chr13 26294060 26294125 -75579044 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 818 262 17 0 chr13 26294204 26294376 -75578793 + MER5A DNA MER1_type 12 186 -3 202 302 75 0 chr13 26294441 26294494 -75578675 + MIR3 SINE MIR 132 188 -20 303 267 67 0 chr13 26297847 26297967 -75575202 + L1ME4a LINE L1 5695 5822 -299 5041 181 67 10 chr13 26297971 26300698 -75572471 + L1MA4 LINE L1 3310 6293 -7 392 252 141 0 chr13 26300680 26300922 -75572247 + L1ME4a LINE L1 5800 6075 -46 * 232 313 25 25 chr13 26302231 26302311 -75570858 + L2 LINE L2 3151 3230 -42 324 266 175 7 chr13 26302377 26302531 -75570638 - MIR SINE MIR -81 181 2 2195 98 7 23 chr13 26302734 26303039 -75570130 - AluSg SINE Alu -10 300 1 301 229 213 59 chr13 26304710 26304839 -75568330 + L1ME4a LINE L1 5675 5783 -338 3743 14 0 0 chr13 26304839 26305265 -75567904 + L1PA2 LINE L1 5727 6152 -3 301 229 213 59 chr13 26305265 26305358 -75567811 + L1ME4a LINE L1 5783 5860 -261 186 43 0 0 chr13 26305358 26305381 -75567788 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 301 229 213 59 chr13 26305381 26305462 -75567707 + L1ME4a LINE L1 5860 6026 -95 26 30 0 0 chr13 26305670 26305703 -75567466 + AT_rich Low_complexity Low_complexity 1 33 0 1188 155 204 12 chr13 26305797 26306042 -75567127 - AluSg1 SINE Alu -17 292 1 297 280 93 34 chr13 26306136 26306254 -75566915 - MIR SINE MIR -126 136 12 194 218 0 55 chr13 26306816 26306871 -75566298 - MIR SINE MIR -29 233 182 362 231 9 37 chr13 26306911 26307019 -75566150 - MIR SINE MIR -41 221 117 449 287 45 13 chr13 26307378 26307535 -75565634 - MIR SINE MIR -49 213 52 252 247 20 110 chr13 26307596 26307742 -75565427 + L2 LINE L2 3173 3305 -8 180 286 111 16 chr13 26308392 26308455 -75564714 + MER5A DNA MER1_type 59 127 -62 346 328 31 36 chr13 26314475 26314667 -75558502 + L1ME4a LINE L1 5726 5916 -205 189 0 0 0 chr13 26314932 26314953 -75558216 + (CA)n Simple_repeat Simple_repeat 2 22 0 368 138 0 50 chr13 26315358 26315438 -75557731 - L1PA3 LINE L1 -1 6154 6079 415 372 92 26 chr13 26315482 26315872 -75557297 - L1MC/D LINE L1 -2028 5780 5365 22 0 0 0 chr13 26315877 26315899 -75557270 + AT_rich Low_complexity Low_complexity 1 22 0 583 257 0 48 chr13 26315907 26316094 -75557075 + MER5B DNA MER1_type 1 178 0 223 396 0 0 chr13 26316120 26316216 -75556953 + L2 LINE L2 1822 1917 -1397 231 291 15 37 chr13 26316231 26316365 -75556804 + L2 LINE L2 2150 2280 -1034 197 313 0 31 chr13 26316766 26316821 -75556348 + L2 LINE L2 2980 3032 -240 512 365 26 0 chr13 26316821 26317010 -75556159 - MER91A DNA MER1_type -2 194 1 225 132 0 0 chr13 26317185 26317223 -75555946 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 188 234 0 43 chr13 26318213 26318260 -75554909 - MIR SINE MIR -115 147 103 294 29 0 0 chr13 26318839 26318874 -75554295 + (CA)n Simple_repeat Simple_repeat 2 36 0 309 228 69 40 chr13 26318956 26319057 -75554112 - L2 LINE L2 0 3272 3169 2342 190 168 25 chr13 26321214 26321981 -75551188 + MER97b DNA MER1_type? 2 878 -175 414 238 82 34 chr13 26322079 26322285 -75550884 + MER97c DNA MER1_type? 870 1085 -5 191 290 120 22 chr13 26322974 26323082 -75550087 - MIR SINE MIR -62 146 44 265 341 40 16 chr13 26323185 26323311 -75549858 - L3 LINE CR1 -1108 469 341 545 261 73 58 chr13 26325282 26325708 -75547461 - L1M4 LINE L1 -2130 4016 3581 1792 137 87 0 chr13 26325708 26325985 -75547184 - AluJb SINE Alu -7 305 5 545 261 73 58 chr13 26325985 26326021 -75547148 - L1M4 LINE L1 -2565 3581 3547 425 252 122 34 chr13 26377878 26378025 -75495144 + MLT1J2 LTR MaLR 284 443 -7 862 193 21 11 chr13 26378026 26378213 -75494956 - MER5A DNA MER1_type 0 189 1 337 285 41 41 chr13 26378535 26378658 -75494511 - MIR SINE MIR -21 241 119 485 275 40 13 chr13 26381609 26381758 -75491411 + MER5A DNA MER1_type 35 187 -2 408 149 284 35 chr13 26382935 26383076 -75490093 - MER5B DNA MER1_type 0 178 3 181 327 0 0 chr13 26383206 26383258 -75489911 - MIR SINE MIR -62 146 95 2095 122 20 0 chr13 26383323 26383617 -75489552 - AluSx SINE Alu -10 302 3 2338 93 13 3 chr13 26384221 26384522 -75488647 + AluSc SINE Alu 3 306 -3 238 49 24 24 chr13 26385000 26385041 -75488128 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 251 207 207 35 chr13 26385542 26385658 -75487511 + MIR SINE MIR 63 198 -64 186 283 50 0 chr13 26385737 26385797 -75487372 - L2 LINE L2 0 3272 3210 33 43 0 0 chr13 26387810 26387857 -75485312 + AT_rich Low_complexity Low_complexity 1 47 0 425 288 140 14 chr13 26387887 26388172 -75484997 - L1ME4a LINE L1 -74 6047 5727 200 200 0 0 chr13 26391067 26391102 -75482067 + A-rich Low_complexity Low_complexity 2 36 0 29 28 0 0 chr13 26391830 26391866 -75481303 + AT_rich Low_complexity Low_complexity 1 36 0 2511 64 0 0 chr13 26392021 26392316 -75480853 + AluY SINE Alu 1 295 -16 306 204 11 102 chr13 26393065 26393153 -75480016 - MIR SINE MIR -10 252 173 333 255 0 0 chr13 26393266 26393364 -75479805 + GA-rich Low_complexity Low_complexity 1 98 0 1075 136 15 97 chr13 26395448 26395654 -75477515 - MER5A DNA MER1_type 0 189 1 477 227 162 25 chr13 26396972 26397170 -75475999 + MIR SINE MIR 33 257 -5 344 296 150 23 chr13 26397164 26397384 -75475785 + MIR SINE MIR 15 262 0 * 186 103 0 0 chr13 26397437 26397466 -75475703 + (CA)n Simple_repeat Simple_repeat 1 29 0 346 363 76 56 chr13 26403123 26403426 -75469743 - L2 LINE L2 0 3272 2964 330 221 137 30 chr13 26403756 26403887 -75469282 - L2 LINE L2 -928 2386 2242 206 146 0 24 chr13 26404019 26404060 -75469109 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2202 131 34 0 chr13 26406460 26406788 -75466381 - MER1B DNA MER1_type 0 339 1 419 121 55 33 chr13 26407317 26407408 -75465761 - L1MC4a LINE L1 -1873 5935 5843 253 285 60 26 chr13 26407411 26407562 -75465607 - L1MC4a LINE L1 -400 5721 5566 2257 96 7 0 chr13 26407927 26408220 -75464949 - AluSx SINE Alu -17 295 1 571 312 30 30 chr13 26408240 26408286 -75464883 - MIR SINE MIR -15 247 202 989 217 27 0 chr13 26408286 26408470 -75464699 + MER5A DNA MER1_type 1 189 0 571 312 30 30 chr13 26408470 26408660 -75464509 - MIR SINE MIR -59 203 11 244 301 211 35 chr13 26408693 26408892 -75464277 - L2 LINE L2 -33 3239 3006 387 309 115 22 chr13 26409241 26409380 -75463789 + MIR3 SINE MIR 35 186 -22 329 212 0 0 chr13 26409393 26409459 -75463710 - MER58 DNA MER1_type 0 2420 2355 219 69 0 0 chr13 26410066 26410095 -75463074 + (A)n Simple_repeat Simple_repeat 1 29 0 206 250 0 21 chr13 26410623 26410671 -75462498 + L2 LINE L2 3263 3309 -4 508 303 12 18 chr13 26411027 26411192 -75461977 - MIR3 SINE MIR -7 201 38 191 263 184 18 chr13 26411789 26411903 -75461266 - L2 LINE L2 -225 3047 2915 231 36 0 0 chr13 26412036 26412064 -75461105 + (CA)n Simple_repeat Simple_repeat 2 29 0 521 269 64 18 chr13 26412066 26412237 -75460932 + MIR3 SINE MIR 21 199 -9 2692 39 0 0 chr13 26412974 26413282 -75459887 - AluY SINE Alu -3 308 1 418 310 131 34 chr13 26415276 26415313 -75457856 - L2 LINE L2 -176 3137 3105 2373 79 3 0 chr13 26415313 26415605 -75457564 + AluY SINE Alu 1 293 -18 418 310 131 34 chr13 26415605 26415960 -75457209 - L2 LINE L2 -208 3105 2705 465 275 88 92 chr13 26416017 26416530 -75456639 + MLT1J LTR MaLR 1 511 0 396 345 71 16 chr13 26416547 26416802 -75456367 - L2 LINE L2 -729 2585 2317 285 217 67 0 chr13 26420164 26420224 -75452945 - L2 LINE L2 -3 3269 3206 295 320 89 92 chr13 26422296 26422612 -75450557 + L2 LINE L2 2831 3145 -127 3087 162 19 32 chr13 26422727 26423259 -75449910 + Tigger7 DNA MER2_type 1 525 -208 695 120 0 0 chr13 26423253 26423345 -75449824 + Tigger7 DNA MER2_type 2396 2487 0 * 316 256 264 0 chr13 26423888 26424017 -75449152 + MER5A DNA MER1_type 27 189 0 346 154 10 135 chr13 26424354 26424458 -75448711 + LTR37A LTR ERV1 94 184 -242 693 179 37 0 chr13 26424479 26424613 -75448556 + LTR37A LTR ERV1 288 426 0 2418 80 3 0 chr13 26424742 26425042 -75448127 - AluSp SINE Alu -12 301 1 4173 11 0 4 chr13 26425686 26426179 -75446990 - L1PA2 LINE L1 0 6155 5702 21 0 0 0 chr13 26427202 26427223 -75445946 + AT_rich Low_complexity Low_complexity 1 21 0 272 234 85 78 chr13 26427255 26427396 -75445773 + L2 LINE L2 3171 3312 -1 182 74 0 37 chr13 26427519 26427546 -75445623 - L2 LINE L2 -20 3252 3227 235 312 62 63 chr13 26428887 26429263 -75443906 + L2 LINE L2 2675 3091 -181 1053 180 115 14 chr13 26432580 26432797 -75440372 - MER8 DNA MER2_type 0 239 1 493 299 7 0 chr13 26432898 26433042 -75440127 - MIR SINE MIR -2 260 116 306 0 0 0 chr13 26436454 26436488 -75436681 + (CA)n Simple_repeat Simple_repeat 2 35 0 187 297 0 31 chr13 26436588 26436652 -75436517 + L3b LINE CR1 1368 1429 -154 249 292 22 11 chr13 26437313 26437402 -75435767 + MIR3 SINE MIR 115 204 -4 294 308 29 19 chr13 26437503 26437607 -75435562 - MIR SINE MIR -111 151 47 2302 85 3 7 chr13 26440580 26440873 -75432296 - AluY SINE Alu -19 292 1 192 298 0 18 chr13 26440887 26440944 -75432225 + MIR3 SINE MIR 105 160 -48 678 268 14 43 chr13 26441012 26441221 -75431948 + MIR SINE MIR 58 260 -2 271 349 112 13 chr13 26441325 26441477 -75431692 - L2 LINE L2 -2 3270 3104 1770 176 52 67 chr13 26441560 26442025 -75431144 + MLT1C LTR MaLR 7 464 -3 184 194 0 60 chr13 26442053 26442120 -75431049 - L2 LINE L2 -209 3063 3001 660 268 18 0 chr13 26443063 26443227 -75429942 - MIR3 SINE MIR -1 207 41 365 335 42 32 chr13 26443270 26443554 -75429615 - L3 LINE CR1 -110 1467 1181 288 217 145 26 chr13 26443809 26443961 -75429208 - L3 LINE CR1 -607 970 801 2388 74 0 0 chr13 26444383 26444679 -75428490 + AluY SINE Alu 1 296 -15 228 370 92 8 chr13 26446227 26446346 -75426823 + L2 LINE L2 3143 3271 -1 491 230 7 61 chr13 26447217 26447365 -75425804 + MIR SINE MIR 113 252 -10 204 200 0 0 chr13 26447872 26447917 -75425252 + (CA)n Simple_repeat Simple_repeat 1 45 0 488 111 12 0 chr13 26448355 26448436 -75424733 + (TTCCC)n Simple_repeat Simple_repeat 3 84 0 314 96 0 19 chr13 26448468 26448520 -75424649 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2215 133 3 0 chr13 26448531 26448840 -75424329 - AluJb SINE Alu 0 312 3 227 271 0 0 chr13 26449527 26449586 -75423583 + GA-rich Low_complexity Low_complexity 1 59 0 233 307 150 20 chr13 26449730 26449883 -75423286 - L2 LINE L2 0 3272 3100 213 218 0 18 chr13 26449963 26450018 -75423151 + L2 LINE L2 3173 3226 -46 1635 171 38 97 chr13 26451343 26451764 -75421405 + MSTD LTR MaLR 1 396 0 2630 229 62 28 chr13 26452336 26453100 -75420069 + L1ME LINE L1 36 825 -5571 1368 237 40 42 chr13 26453112 26453568 -75419601 + MLT1D LTR MaLR 49 503 -2 2367 269 36 19 chr13 26453583 26454694 -75418475 + L1ME LINE L1 816 1945 -4451 5033 237 70 29 chr13 26454723 26456753 -75416416 + L1ME LINE L1 2101 4185 -2030 765 202 56 63 chr13 26456759 26457106 -75416063 + L1ME1 LINE L1 5829 6311 -1 781 273 97 2 chr13 26458285 26458507 -75414662 + MIR SINE MIR 11 262 0 418 329 75 4 chr13 26458695 26458925 -75414244 - MIR SINE MIR -2 260 10 307 308 64 29 chr13 26459635 26459807 -75413362 + L1ME LINE L1 5290 5467 -748 250 321 38 11 chr13 26459911 26460095 -75413074 + L1ME4a LINE L1 5827 6015 -106 24 32 0 0 chr13 26460140 26460171 -75412998 + AT_rich Low_complexity Low_complexity 1 31 0 2089 141 0 0 chr13 26460181 26460486 -75412683 + AluSx SINE Alu 1 305 -7 977 303 80 34 chr13 26461337 26461812 -75411357 - L2 LINE L2 0 3313 2817 451 225 12 12 chr13 26461971 26462140 -75411029 + (CATATA)n Simple_repeat Simple_repeat 4 172 0 189 339 23 39 chr13 26462983 26463113 -75410056 - L2 LINE L2 -178 3094 2967 309 314 99 6 chr13 26463417 26463629 -75409540 + L1ME LINE L1 5602 5840 -350 269 239 15 0 chr13 26463936 26464003 -75409166 - MIR SINE MIR -98 164 97 193 305 130 45 chr13 26464927 26465127 -75408042 + L2 LINE L2 1618 1834 -1480 1044 321 124 35 chr13 26465337 26466605 -75406564 + L2 LINE L2 1832 3219 -94 2059 92 0 54 chr13 26466694 26466989 -75406180 + AluSq SINE Alu 1 279 -34 184 372 44 35 chr13 26467715 26467828 -75405341 - L2 LINE L2 -5 3308 3195 305 159 16 0 chr13 26467847 26467910 -75405259 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 2214 164 60 2 chr13 26468077 26468480 -75404689 + MSTB LTR MaLR 1 426 0 286 301 128 8 chr13 26469215 26469348 -75403821 + MER117 DNA MER1_type 7 155 -42 1879 158 3 30 chr13 26469532 26469836 -75403333 + AluJb SINE Alu 1 296 -16 2231 91 7 3 chr13 26470682 26470978 -75402191 - AluSq SINE Alu -16 297 1 1918 162 36 17 chr13 26472114 26472472 -75400697 - MLT1A1 LTR MaLR 0 365 1 308 209 15 0 chr13 26472823 26472890 -75400279 + Tigger2 DNA MER2_type 2 69 -2649 * 2365 158 11 25 chr13 26472888 26473091 -75400078 + Tigger2 DNA MER2_type 2280 2484 -234 1692 164 55 10 chr13 26473091 26473384 -75399785 - AluJb SINE Alu -6 306 1 2365 158 11 25 chr13 26473384 26473624 -75399545 + Tigger2 DNA MER2_type 2484 2717 -1 409 237 137 8 chr13 26473917 26474048 -75399121 - MIR SINE MIR -86 176 29 534 286 120 14 chr13 26475209 26475426 -75397743 + MIR SINE MIR 23 262 0 2590 258 52 22 chr13 26475533 26476190 -75396979 + L1MEc LINE L1 35 730 -5666 207 0 0 0 chr13 26476190 26476213 -75396956 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2590 258 52 22 chr13 26476213 26476502 -75396667 + L1MEc LINE L1 730 1009 -5387 219 252 39 10 chr13 26477294 26477397 -75395772 + (TA)n Simple_repeat Simple_repeat 2 107 0 23 0 0 0 chr13 26477567 26477590 -75395579 + AT_rich Low_complexity Low_complexity 1 23 0 1718 169 32 23 chr13 26477858 26478166 -75395003 + AluJb SINE Alu 1 311 -1 189 200 25 0 chr13 26478245 26478285 -75394884 + L2 LINE L2 3210 3250 -22 217 333 44 130 chr13 26478605 26479013 -75394156 + L2 LINE L2 2848 3220 -52 668 299 98 48 chr13 26479653 26480195 -75392974 + L2 LINE L2 2197 2765 -549 211 320 301 0 chr13 26480255 26480358 -75392811 + L2 LINE L2 3137 3270 -2 2548 47 0 3 chr13 26480790 26481090 -75392079 - AluY SINE Alu -12 299 1 1100 35 42 14 chr13 26481731 26481874 -75391295 - L1PA8 LINE L1 -8 6164 6018 339 254 37 15 chr13 26481888 26482022 -75391147 - MER103 DNA DNA -8 158 22 311 246 72 0 chr13 26482742 26482811 -75390358 + L3 LINE CR1 1478 1551 -26 229 342 34 0 chr13 26482981 26483130 -75390039 + L1ME LINE L1 4736 4889 -1257 22 0 0 0 chr13 26483338 26483360 -75389809 + AT_rich Low_complexity Low_complexity 1 22 0 323 347 7 0 chr13 26483543 26483690 -75389479 + L1ME LINE L1 5564 5711 -410 292 275 169 50 chr13 26483764 26483924 -75389245 - MIR SINE MIR -10 252 74 27 0 0 0 chr13 26483990 26484017 -75389152 + AT_rich Low_complexity Low_complexity 1 27 0 333 118 0 0 chr13 26484900 26484951 -75388218 + (CA)n Simple_repeat Simple_repeat 2 52 0 347 189 234 18 chr13 26485194 26485305 -75387864 + L2 LINE L2 3179 3313 0 183 80 0 0 chr13 26485292 26485317 -75387852 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 252 318 139 16 chr13 26485708 26485837 -75387332 + MIR SINE MIR 10 154 -108 357 86 0 0 chr13 26487982 26488040 -75385129 + (TA)n Simple_repeat Simple_repeat 1 58 0 25 31 0 0 chr13 26488263 26488295 -75384874 + AT_rich Low_complexity Low_complexity 1 32 0 6027 58 6 323 chr13 26489541 26491526 -75381643 - SVA Other Other 0 1386 32 271 0 0 49 chr13 26491527 26491568 -75381601 + (GGGAGA)n Simple_repeat Simple_repeat 1 39 0 2131 118 7 0 chr13 26492225 26492512 -75380657 + AluSx SINE Alu 1 289 -23 2291 114 7 0 chr13 26492544 26492851 -75380318 + AluSx SINE Alu 1 309 -3 1260 108 0 0 chr13 26493233 26493399 -75379770 + AluSg SINE Alu 38 203 -107 1397 196 0 91 chr13 26493539 26493881 -75379288 + AluJo SINE Alu 1 311 -1 2123 124 3 0 chr13 26493988 26494279 -75378890 + AluSx SINE Alu 1 292 -20 446 176 24 0 chr13 26495527 26495612 -75377557 - Tigger5 DNA MER2_type 0 2323 2237 508 193 0 0 chr13 26495623 26495711 -75377458 + Tigger5 DNA MER2_type 1 88 -2235 232 175 0 0 chr13 26495774 26495814 -75377355 - Tigger5 DNA MER2_type -2283 40 1 195 289 173 41 chr13 26495936 26496133 -75377036 + L2 LINE L2 3074 3296 -17 40 49 0 0 chr13 26496133 26496194 -75376975 + AT_rich Low_complexity Low_complexity 1 61 0 303 274 24 0 chr13 26496219 26496303 -75376866 + GA-rich Low_complexity Low_complexity 3 88 0 329 247 12 0 chr13 26497278 26497363 -75375806 + Tigger7 DNA MER2_type 2402 2487 0 354 267 53 82 chr13 26501551 26501757 -75371412 - MIR SINE MIR -24 238 39 340 340 54 14 chr13 26501892 26502039 -75371130 - L2 LINE L2 0 3313 3161 411 322 152 29 chr13 26505483 26505935 -75367234 + L2 LINE L2 2782 3288 -25 2617 150 78 23 chr13 26506024 26506550 -75366619 + MER74A LTR ERVL 2 556 -2 2004 135 10 16 chr13 26506657 26506969 -75366200 + AluSx SINE Alu 1 310 -2 753 133 66 46 chr13 26507257 26507344 -75365825 + L1MC1 LINE L1 6161 6254 -79 2416 119 86 28 chr13 26507344 26507774 -75365395 - MSTB2 LTR MaLR -2 455 1 753 133 66 46 chr13 26507774 26507837 -75365332 + L1MC1 LINE L1 6254 6314 -19 356 195 0 26 chr13 26508925 26509002 -75364167 - MER116 DNA Mariner -5 75 1 225 0 0 0 chr13 26509236 26509261 -75363908 + (T)n Simple_repeat Simple_repeat 1 25 0 182 348 22 44 chr13 26511872 26512007 -75361162 + L3 LINE CR1 1230 1361 -216 205 317 50 0 chr13 26512026 26512086 -75361083 - L2 LINE L2 -3 3310 3248 220 360 138 14 chr13 26512436 26512725 -75360444 - L2 LINE L2 -519 2795 2471 571 209 27 75 chr13 26512990 26513177 -75359992 - MER5B DNA MER1_type 0 178 1 1181 97 6 45 chr13 26513340 26513516 -75359653 - AluSq SINE Alu -11 302 134 1898 92 110 14 chr13 26513516 26513798 -75359371 - AluSg1 SINE Alu 0 309 1 294 366 71 0 chr13 26514015 26514127 -75359042 + L2 LINE L2 3134 3253 -19 928 168 77 10 chr13 26515197 26515405 -75357764 + L1MC4a LINE L1 7306 7527 -281 190 390 26 39 chr13 26517774 26517928 -75355241 - L2 LINE L2 -5 3267 3116 282 289 99 21 chr13 26518007 26518149 -75355020 - L2 LINE L2 -192 3080 2928 181 342 0 26 chr13 26518509 26518585 -75354584 - MER5A DNA MER1_type -40 149 76 301 260 130 84 chr13 26519227 26519381 -75353788 + MIR3 SINE MIR 43 203 -5 2460 74 0 0 chr13 26519424 26519721 -75353448 - AluY SINE Alu -14 297 1 189 224 75 45 chr13 26520576 26520643 -75352526 - L2 LINE L2 -16 3297 3229 224 286 0 0 chr13 26521368 26521417 -75351752 + L2 LINE L2 3246 3294 -19 380 161 74 12 chr13 26521504 26521585 -75351584 + L2 LINE L2 3223 3308 -5 21 0 0 0 chr13 26522566 26522587 -75350582 + AT_rich Low_complexity Low_complexity 1 21 0 2374 199 18 32 chr13 26524656 26525214 -75347955 - MER74A LTR ERVL -6 552 3 310 291 284 0 chr13 26525252 26525393 -75347776 - MER5A DNA MER1_type 0 189 9 351 302 81 29 chr13 26525468 26525640 -75347529 - MIR SINE MIR -16 246 66 733 265 113 4 chr13 26526102 26526340 -75346829 - L2 LINE L2 -50 3263 3000 3035 75 2 0 chr13 26526421 26526821 -75346348 - L1PA7 LINE L1 -1 6153 5753 2088 125 3 0 chr13 26526831 26527120 -75346049 - AluSx SINE Alu -22 290 1 198 0 0 0 chr13 26527678 26527700 -75345469 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 374 255 21 55 chr13 26528431 26528576 -75344593 - HAL1 LINE L1 -7 2500 2361 2275 254 80 50 chr13 26528739 26529904 -75343265 - HAL1 LINE L1 -115 2392 1193 1969 158 6 28 chr13 26529932 26530293 -75342876 + THE1B LTR MaLR 1 353 -11 379 256 42 74 chr13 26530343 26530628 -75342541 - HAL1 LINE L1 -1410 1097 822 365 302 118 96 chr13 26530929 26531469 -75341700 - HAL1 LINE L1 -1954 553 2 253 280 27 0 chr13 26531772 26531847 -75341322 + GA-rich Low_complexity Low_complexity 4 80 0 213 214 0 0 chr13 26532211 26532253 -75340916 + (TATG)n Simple_repeat Simple_repeat 2 43 0 219 309 155 0 chr13 26532571 26532655 -75340514 + MIR SINE MIR 152 248 -14 2277 116 0 6 chr13 26534011 26534322 -75338847 + AluSg SINE Alu 2 310 0 377 222 0 0 chr13 26534732 26534804 -75338365 + MER81 DNA DNA 1 72 -42 2499 59 20 0 chr13 26534816 26535120 -75338049 + AluY SINE Alu 2 311 0 396 258 168 39 chr13 26535335 26535490 -75337679 - MER5B DNA MER1_type -2 176 2 204 324 54 14 chr13 26535759 26535833 -75337336 - L2 LINE L2 -40 3273 3197 403 348 108 42 chr13 26538178 26538531 -75334638 - L2 LINE L2 0 3272 2897 3911 203 116 78 chr13 26538875 26539437 -75333732 - L1MC3 LINE L1 -12 7773 7234 312 212 61 0 chr13 26539437 26539503 -75333666 - MLT1F1 LTR MaLR -453 114 45 3911 203 116 78 chr13 26539503 26540191 -75332978 - L1MC3 LINE L1 -551 7234 6408 22 0 0 0 chr13 26540222 26540244 -75332925 + AT_rich Low_complexity Low_complexity 1 22 0 416 242 102 16 chr13 26540297 26540425 -75332744 + MLT1J2 LTR MaLR 35 173 -277 791 268 64 38 chr13 26540499 26540920 -75332249 + L1ME2 LINE L1 3873 4304 -1842 4125 215 84 41 chr13 26540925 26542480 -75330689 - L1MB7 LINE L1 -1 6168 4681 2244 87 3 3 chr13 26542480 26542766 -75330403 - AluSc SINE Alu -13 296 11 4125 215 84 41 chr13 26542766 26542806 -75330363 - L1MB7 LINE L1 -1488 4681 4644 782 160 0 8 chr13 26542806 26542937 -75330232 + FLAM_C SINE Alu 4 133 0 4125 215 84 41 chr13 26542937 26543758 -75329411 - L1MB7 LINE L1 -1525 4644 3649 2457 242 85 49 chr13 26543762 26544534 -75328635 + L1ME2 LINE L1 4322 5065 -1099 1179 117 0 0 chr13 26544534 26544714 -75328455 + (TA)n Simple_repeat Simple_repeat 1 180 0 2457 242 85 49 chr13 26544714 26545717 -75327452 + L1ME2 LINE L1 5065 6154 -10 2311 110 0 0 chr13 26545824 26546133 -75327036 + AluY SINE Alu 1 309 -2 21 57 0 0 chr13 26546258 26546293 -75326876 + AT_rich Low_complexity Low_complexity 1 35 0 203 100 0 50 chr13 26546306 26546346 -75326823 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 433 271 149 11 chr13 26546348 26546529 -75326640 + MIR SINE MIR 57 262 0 204 40 0 0 chr13 26550090 26550115 -75323054 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 26551339 26551360 -75321809 + AT_rich Low_complexity Low_complexity 1 21 0 227 223 0 96 chr13 26551363 26551457 -75321712 + L1ME4a LINE L1 5880 5964 -157 191 111 0 28 chr13 26551460 26551496 -75321673 + (TA)n Simple_repeat Simple_repeat 1 35 0 252 59 0 0 chr13 26552350 26552384 -75320785 + (T)n Simple_repeat Simple_repeat 1 34 0 2117 118 0 16 chr13 26554219 26554534 -75318635 - AluSq SINE Alu -3 310 1 231 288 0 17 chr13 26554534 26554593 -75318576 + MER20B DNA MER1_type 122 179 -604 264 333 33 8 chr13 26554683 26554803 -75318366 + L3b LINE CR1 1108 1230 -353 2179 170 30 24 chr13 26554933 26555398 -75317771 + L1MB1 LINE L1 3287 3754 -2392 4456 180 34 9 chr13 26555559 26556947 -75316222 + L1MB1 LINE L1 4744 6166 -2 227 343 52 52 chr13 26556981 26557115 -75316054 + L3b LINE CR1 1443 1576 -7 186 43 0 0 chr13 26557749 26557772 -75315397 + (CA)n Simple_repeat Simple_repeat 2 24 0 276 296 91 15 chr13 26558742 26558874 -75314295 - MIR SINE MIR -9 253 112 1931 147 6 13 chr13 26560089 26560224 -75312945 + AluSx SINE Alu 1 135 -177 2386 88 0 0 chr13 26560224 26560529 -75312640 + AluY SINE Alu 1 305 -6 1931 147 6 13 chr13 26560529 26560707 -75312462 + AluSx SINE Alu 135 312 0 565 311 96 0 chr13 26560969 26561178 -75311991 + MIR SINE MIR 26 254 -8 2337 91 7 3 chr13 26561186 26561483 -75311686 + AluSx SINE Alu 1 298 -14 1104 198 9 91 chr13 26562480 26562799 -75310370 + MLT1A1 LTR MaLR 56 348 -17 6438 205 98 60 chr13 26562809 26564237 -75308932 + MLT1A1-int LTR MaLR 1 1503 -232 1928 151 0 10 chr13 26564237 26564535 -75308634 - AluSx SINE Alu -15 297 3 6438 205 98 60 chr13 26564535 26564778 -75308391 + MLT1A1-int LTR MaLR 1503 1735 0 1081 223 57 79 chr13 26564781 26565149 -75308020 + MLT1A1 LTR MaLR 4 363 -2 2452 164 31 2 chr13 26565260 26565674 -75307495 - MSTB LTR MaLR 0 426 1 1972 128 24 0 chr13 26565782 26566071 -75307098 + AluSx SINE Alu 1 296 -16 795 265 38 93 chr13 26566384 26566675 -75306494 + MLT1E LTR MaLR 231 505 -88 484 288 118 26 chr13 26566772 26567078 -75306091 + MER93a LTR ERV1 58 391 -11 2191 119 58 73 chr13 26567085 26567498 -75305671 + MLT2D LTR ERVL 2 408 -6 2252 198 19 50 chr13 26567501 26567966 -75305203 - MLT2B3 LTR ERVL -23 531 81 349 97 28 83 chr13 26568078 26568109 -75305060 - MLT2B3 LTR ERVL -486 68 37 1974 132 46 32 chr13 26568109 26568479 -75304690 - THE1C LTR MaLR 0 375 1 349 97 28 83 chr13 26568479 26568519 -75304650 - MLT2B3 LTR ERVL -517 37 1 1918 240 107 56 chr13 26569491 26570671 -75302498 - L1ME2 LINE L1 -15 6149 4866 1704 176 13 10 chr13 26570671 26570977 -75302192 - AluJo SINE Alu -5 307 1 1918 240 107 56 chr13 26570977 26571332 -75301837 - L1ME2 LINE L1 -1298 4866 4530 1388 244 102 59 chr13 26571337 26572119 -75301050 - L1ME2 LINE L1 -1778 4368 3553 21 36 0 0 chr13 26623820 26623848 -75249321 + AT_rich Low_complexity Low_complexity 1 28 0 447 246 85 106 chr13 26624055 26624291 -75248878 + MIR SINE MIR 21 251 -11 1554 169 86 0 chr13 26624439 26624706 -75248463 + AluJb SINE Alu 1 290 -22 360 133 0 0 chr13 26624706 26624766 -75248403 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 341 172 62 0 chr13 26624781 26624845 -75248324 + L1M1 LINE L1 14 81 -7484 * 6211 178 36 36 chr13 26624843 26626876 -75246293 + L1M1 LINE L1 3128 5183 -2382 1278 112 28 0 chr13 26626876 26627091 -75246078 + L1M1 LINE L1 5854 6074 -1491 379 65 65 0 chr13 26627091 26627151 -75246018 + L1MA3 LINE L1 6240 6305 0 679 317 106 26 chr13 26627629 26628045 -75245124 - L2 LINE L2 0 3313 2865 22 35 0 0 chr13 26629144 26629173 -75243996 + AT_rich Low_complexity Low_complexity 1 29 0 366 229 67 19 chr13 26631544 26631649 -75241520 + MER117 DNA MER1_type 5 114 -83 243 182 39 13 chr13 26632038 26632115 -75241054 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 223 284 108 27 chr13 26632722 26632796 -75240373 + L2 LINE L2 3197 3276 -37 253 328 99 59 chr13 26632808 26633382 -75239787 - L2 LINE L2 -850 2464 1868 2159 77 7 44 chr13 26634129 26634449 -75238720 + AluSp SINE Alu 1 309 0 306 246 15 0 chr13 26634504 26634569 -75238600 + MIR3 SINE MIR 117 182 -26 192 77 0 0 chr13 26634825 26634851 -75238318 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 213 39 0 0 chr13 26636352 26636378 -75236791 + (CACAA)n Simple_repeat Simple_repeat 3 28 0 561 173 58 79 chr13 26639190 26639329 -75233840 + MER33 DNA MER1_type 1 136 -188 * 660 189 27 7 chr13 26639318 26639466 -75233703 + MLT1D LTR MaLR 353 503 -2 305 200 15 0 chr13 26639466 26639531 -75233638 + MER33 DNA MER1_type 297 362 -1 351 291 34 0 chr13 26639535 26639652 -75233517 + L2 LINE L2 3192 3312 -1 279 253 0 53 chr13 26639690 26639765 -75233404 - L2 LINE L2 0 3313 3243 428 183 20 74 chr13 26639765 26639862 -75233307 + L1MB5 LINE L1 5961 6049 -125 2362 102 0 0 chr13 26639862 26640165 -75233004 - AluSx SINE Alu -9 303 1 428 183 20 74 chr13 26640165 26640187 -75232982 + L1MB5 LINE L1 6049 6071 -103 547 200 37 126 chr13 26640263 26640478 -75232691 - MLT1A1 LTR MaLR -169 196 1 416 269 149 62 chr13 26641260 26641535 -75231634 + L2 LINE L2 3015 3313 0 521 206 136 39 chr13 26641756 26641911 -75231258 + MIR SINE MIR 82 251 -11 374 369 78 18 chr13 26641920 26642137 -75231032 + L3 LINE CR1 1329 1558 -19 2830 16 0 0 chr13 26643856 26644165 -75229004 - AluYa5 SINE Alu -2 309 1 461 263 11 16 chr13 26644399 26644536 -75228633 + MER20B DNA MER1_type 58 197 -22 321 303 67 52 chr13 26644721 26644988 -75228181 + L1M4 LINE L1 2670 2940 -3206 1346 161 0 9 chr13 26645300 26645523 -75227646 - AluJb SINE Alu -5 307 87 264 158 0 0 chr13 26645708 26645765 -75227404 + (CA)n Simple_repeat Simple_repeat 2 58 0 448 267 46 59 chr13 26645765 26646068 -75227101 + L1M4 LINE L1 3524 3822 -2324 2274 203 37 4 chr13 26647690 26648179 -75224990 + MLT1D LTR MaLR 1 505 0 2287 98 0 3 chr13 26648304 26648610 -75224559 - AluSg SINE Alu -5 305 1 841 141 6 24 chr13 26648618 26648788 -75224381 - L1MA6 LINE L1 0 6300 6134 2173 89 7 36 chr13 26649524 26649826 -75223343 + AluSc SINE Alu 9 301 -8 381 344 73 38 chr13 26649961 26650249 -75222920 - L3 LINE CR1 -343 1234 937 495 298 73 87 chr13 26651721 26652258 -75220911 + L1MEd LINE L1 23 566 -5553 1338 201 21 28 chr13 26652258 26652541 -75220628 - AluJo SINE Alu -31 281 1 495 298 73 87 chr13 26652541 26653105 -75220064 + L1MEd LINE L1 566 1109 -5010 2073 128 0 13 chr13 26653226 26653524 -75219645 + AluSc SINE Alu 1 294 -15 871 272 107 46 chr13 26653542 26654167 -75219002 + L1ME3A LINE L1 5294 5956 -214 207 0 0 0 chr13 26656203 26656226 -75216943 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 495 0 0 0 chr13 26656403 26656458 -75216711 + (CA)n Simple_repeat Simple_repeat 2 56 0 605 295 52 19 chr13 26657287 26657497 -75215672 - MIR SINE MIR -14 248 32 392 282 8 8 chr13 26657587 26657704 -75215465 + LTR16B LTR ERVL 35 151 -313 463 77 0 0 chr13 26658146 26658211 -75214958 - L1PA6 LINE L1 -1 6153 6089 316 265 49 29 chr13 26659546 26659648 -75213521 - L2 LINE L2 -7 3265 3162 1902 147 119 16 chr13 26659648 26660036 -75213133 - MSTA LTR MaLR 0 428 1 1592 274 100 10 chr13 26660150 26660782 -75212387 + L2 LINE L2 2440 3151 -162 329 274 12 0 chr13 26660825 26660909 -75212260 - MER63A DNA MER1_type -26 184 100 474 259 38 8 chr13 26660992 26661123 -75212046 + L2 LINE L2 3178 3312 -1 17716 141 29 20 chr13 26661823 26664717 -75208452 + L1MA3 LINE L1 1 2921 -4644 400 215 56 0 chr13 26664715 26664822 -75208347 + L1MA3 LINE L1 4246 4358 -3207 * 362 236 21 126 chr13 26664986 26665177 -75207992 + L1ME LINE L1 5254 5424 -2384 288 284 99 33 chr13 26665282 26665525 -75207644 + L1ME LINE L1 5496 5754 -367 203 0 0 36 chr13 26666094 26666122 -75207047 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7555 29 18 0 chr13 26666122 26667086 -75206083 - L1PA3 LINE L1 -6 6149 5182 276 206 0 0 chr13 26667087 26667155 -75206014 + L1MA3 LINE L1 4349 4416 -3149 1456 179 19 0 chr13 26667155 26667423 -75205746 - L1MA3 LINE L1 -2094 5471 5199 6700 136 17 32 chr13 26667430 26669463 -75203706 + L1MA3 LINE L1 5486 7480 -244 1731 136 39 11 chr13 26669463 26669743 -75203426 + AluJb SINE Alu 1 288 -24 6700 136 17 32 chr13 26669743 26669985 -75203184 + L1MA3 LINE L1 7480 7724 0 195 386 68 11 chr13 26671057 26671145 -75202024 - L2 LINE L2 -32 3240 3148 278 191 0 0 chr13 26671763 26671810 -75201359 + L2 LINE L2 3210 3256 -16 436 169 102 8 chr13 26675712 26675830 -75197339 + L1MA8 LINE L1 6161 6289 -2 716 140 67 61 chr13 26676034 26676198 -75196971 + L1MB8 LINE L1 6008 6172 -6 1110 179 93 4 chr13 26676211 26676490 -75196679 + L1 LINE L1 3183 3486 -2660 1181 123 15 20 chr13 26676490 26676685 -75196484 + AluSg/x SINE Alu 115 308 -4 215 233 0 0 chr13 26677305 26677348 -75195821 + CT-rich Low_complexity Low_complexity 2 44 0 608 245 155 0 chr13 26677561 26677716 -75195453 + MER5A DNA MER1_type 11 189 0 541 254 56 0 chr13 26678144 26678286 -75194883 + MER69A DNA AcHobo 28 177 0 3755 48 0 6 chr13 26678326 26678800 -75194369 - L1PA7 LINE L1 -8 6146 5676 405 172 0 0 chr13 26678810 26678932 -75194237 + (TA)n Simple_repeat Simple_repeat 1 122 0 2161 125 3 0 chr13 26678932 26679229 -75193940 - AluSx SINE Alu -14 298 1 195 129 0 0 chr13 26679653 26679684 -75193485 + (CA)n Simple_repeat Simple_repeat 2 32 0 318 352 57 6 chr13 26679906 26680082 -75193087 - L1ME LINE L1 -320 5801 5617 14506 189 74 16 chr13 26680271 26680619 -75192550 - L1PB1 LINE L1 -316 6551 6225 234 0 0 0 chr13 26680619 26680645 -75192524 + (TTG)n Simple_repeat Simple_repeat 2 27 0 14506 189 74 16 chr13 26680645 26686476 -75186693 - L1PB1 LINE L1 -642 6225 6 6641 233 64 17 chr13 26686490 26692327 -75180842 - L1MDa LINE L1 -421 6215 17 257 194 0 30 chr13 26693548 26693615 -75179554 + (CATA)n Simple_repeat Simple_repeat 2 66 0 745 247 101 22 chr13 26693615 26693636 -75179533 - L1ME4a LINE L1 -157 5964 5946 297 109 0 0 chr13 26693636 26693682 -75179487 + (TG)n Simple_repeat Simple_repeat 2 47 0 745 247 101 22 chr13 26693682 26693976 -75179193 - L1ME4a LINE L1 -175 5946 5624 311 317 45 55 chr13 26694793 26695102 -75178067 - L1ME4a LINE L1 -801 5345 5040 2300 96 0 3 chr13 26695181 26695474 -75177695 - AluSq SINE Alu -21 292 1 30 27 0 0 chr13 26695476 26695513 -75177656 + AT_rich Low_complexity Low_complexity 1 37 0 848 324 25 16 chr13 26695933 26696378 -75176791 + L1MC4a LINE L1 5453 5901 -1907 285 29 0 0 chr13 26696408 26696442 -75176727 + (TG)n Simple_repeat Simple_repeat 1 34 0 31 26 0 0 chr13 26696670 26696708 -75176461 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 26698193 26698221 -75174948 + AT_rich Low_complexity Low_complexity 1 28 0 191 133 22 0 chr13 26698469 26698514 -75174655 + GA-rich Low_complexity Low_complexity 2 47 0 206 264 38 75 chr13 26699098 26699204 -75173965 + MIR SINE MIR 33 134 -74 265 331 90 35 chr13 26699635 26699780 -75173389 + MIR3 SINE MIR 19 171 -37 2230 91 10 3 chr13 26701747 26702045 -75171124 + AluSx SINE Alu 1 300 -12 2038 148 3 0 chr13 26702473 26702771 -75170398 + AluSx SINE Alu 1 299 -13 292 206 0 15 chr13 26703023 26703091 -75170078 + HsTC2 DNA Tc2 8 74 -1824 21 57 0 0 chr13 26703523 26703558 -75169611 + AT_rich Low_complexity Low_complexity 1 35 0 528 122 0 0 chr13 26703581 26703663 -75169506 + (CA)n Simple_repeat Simple_repeat 2 83 0 2318 84 10 10 chr13 26704248 26704558 -75168611 - AluY SINE Alu -1 310 1 465 225 95 35 chr13 26704692 26704861 -75168308 - MIR SINE MIR -10 252 74 184 299 0 75 chr13 26705832 26705899 -75167270 + L2 LINE L2 3116 3177 -95 232 196 0 0 chr13 26706337 26706388 -75166781 + L1MC4 LINE L1 6653 6703 -1339 186 208 0 0 chr13 26706388 26706436 -75166733 + (TA)n Simple_repeat Simple_repeat 2 49 0 369 279 95 39 chr13 26707368 26707557 -75165612 - MIR SINE MIR -65 143 1 23 33 0 0 chr13 26707754 26707784 -75165385 + AT_rich Low_complexity Low_complexity 1 30 0 1280 230 16 23 chr13 26707880 26708184 -75164985 - AluJo SINE Alu -10 302 1 1447 245 35 38 chr13 26708596 26709049 -75164120 + LTR40a LTR ERVL 68 519 0 196 312 183 0 chr13 26709646 26709739 -75163430 - MIR SINE MIR -83 125 16 704 236 15 84 chr13 26709839 26710042 -75163127 + MIR SINE MIR 8 196 -66 1722 214 47 31 chr13 26710392 26710879 -75162290 + MLT1D LTR MaLR 1 495 -10 402 267 51 90 chr13 26710975 26711286 -75161883 - L2 LINE L2 0 3313 3015 299 304 31 99 chr13 26712297 26712458 -75160711 + MIR SINE MIR 24 173 -89 624 213 77 12 chr13 26712943 26713130 -75160039 - MER58C DNA MER1_type 0 215 1 2065 124 3 3 chr13 26713280 26713578 -75159591 + AluSq SINE Alu 1 298 -15 261 224 0 31 chr13 26713943 26714041 -75159128 + GA-rich Low_complexity Low_complexity 2 96 0 2075 126 0 3 chr13 26714138 26714431 -75158738 + AluSx SINE Alu 1 292 -20 2081 108 17 7 chr13 26714431 26714719 -75158450 + AluSp SINE Alu 17 307 -6 239 376 40 0 chr13 26714932 26715033 -75158136 - MER91A DNA MER1_type -45 151 47 2122 181 12 2 chr13 26716732 26717140 -75156029 + MLT2C2 LTR ERVL 1 412 -52 23 54 0 0 chr13 26718903 26718940 -75154229 + AT_rich Low_complexity Low_complexity 1 37 0 1223 242 75 16 chr13 26721032 26721591 -75151578 - HAL1 LINE L1 -171 2336 1701 529 283 96 33 chr13 26721626 26721932 -75151237 - HAL1 LINE L1 -1164 1343 1058 2121 128 0 3 chr13 26721932 26722228 -75150941 + AluSx SINE Alu 1 295 -17 529 283 96 33 chr13 26722228 26723101 -75150068 - HAL1 LINE L1 -1449 1058 14 242 195 0 0 chr13 26724568 26724609 -75148560 - L2 LINE L2 -8 3264 3224 183 352 0 34 chr13 26726170 26726258 -75146911 + L2 LINE L2 2994 3078 -194 198 103 0 0 chr13 26726396 26726425 -75146744 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 762 103 37 7 chr13 26728717 26728853 -75144316 - Tigger1 DNA MER2_type -74 2344 2205 * 872 166 0 13 chr13 26728847 26729004 -75144165 - Tigger1 DNA MER2_type -2263 155 1 1834 182 92 14 chr13 26729015 26729448 -75143721 + MLT1C LTR MaLR 1 467 0 484 253 187 0 chr13 26730873 26731023 -75142146 + MER5A DNA MER1_type 9 186 -3 180 250 0 97 chr13 26733149 26733221 -75139948 + L2 LINE L2 3249 3313 0 2025 114 40 0 chr13 26733297 26733609 -75139560 + AluSx SINE Alu 1 323 0 1758 128 94 26 chr13 26733685 26734036 -75139133 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr13 26734647 26734680 -75138489 + AT_rich Low_complexity Low_complexity 1 33 0 657 236 62 36 chr13 26735054 26735330 -75137839 + MER39 LTR ERV1 425 707 0 497 294 78 39 chr13 26736879 26737083 -75136086 - L2 LINE L2 -3 3310 3099 678 309 240 17 chr13 26737111 26737142 -75136027 - L2 LINE L2 -351 2963 2940 2609 174 10 14 chr13 26737142 26737647 -75135522 + L1MC1 LINE L1 5830 6332 -1 678 309 240 17 chr13 26737647 26738081 -75135088 - L2 LINE L2 -374 2940 2394 274 294 0 0 chr13 26738209 26738277 -75134892 + (TA)n Simple_repeat Simple_repeat 2 69 0 216 306 26 45 chr13 26738342 26738487 -75134682 - MIR SINE MIR -63 145 24 283 311 153 22 chr13 26740400 26740583 -75132586 - MIR SINE MIR -50 212 6 345 354 67 12 chr13 26741307 26741471 -75131698 + MIR SINE MIR 28 200 -62 380 330 0 0 chr13 26742308 26742420 -75130749 + MIR3 SINE MIR 87 198 -10 819 296 20 2 chr13 26743226 26743465 -75129704 + MIR SINE MIR 4 244 -18 208 186 23 0 chr13 26743674 26743717 -75129452 + GA-rich Low_complexity Low_complexity 3 46 0 337 366 49 24 chr13 26743959 26744123 -75129046 - MIR3 SINE MIR -28 180 13 378 0 0 0 chr13 26744408 26744450 -75128719 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr13 26744782 26744805 -75128364 + AT_rich Low_complexity Low_complexity 1 23 0 657 36 0 0 chr13 26746751 26746835 -75126334 + AluSg/x SINE Alu 219 302 -8 324 0 0 0 chr13 26748595 26748631 -75124538 + (CA)n Simple_repeat Simple_repeat 2 37 0 497 308 35 30 chr13 26748879 26749048 -75124121 - MIR SINE MIR -51 211 42 382 322 24 97 chr13 26750376 26750749 -75122420 - L2 LINE L2 -27 3245 2900 272 257 0 40 chr13 26750786 26750860 -75122309 - L2 LINE L2 -538 2776 2706 790 318 69 40 chr13 26750954 26751148 -75122021 - L2 LINE L2 -609 2705 2518 953 243 14 9 chr13 26751148 26751370 -75121799 - MER58A DNA MER1_type -1 223 1 790 318 69 40 chr13 26751370 26751625 -75121544 - L2 LINE L2 -796 2518 2243 294 214 20 51 chr13 26751843 26751941 -75121228 - MLT1J2 LTR MaLR -354 96 2 21 36 0 0 chr13 26752964 26752992 -75120177 + AT_rich Low_complexity Low_complexity 1 28 0 2270 106 0 0 chr13 26754415 26754716 -75118453 - AluY SINE Alu -10 301 1 234 324 52 0 chr13 26754923 26755059 -75118110 + L1P LINE L1 4910 5052 -1094 329 287 231 12 chr13 26755296 26755620 -75117549 + L1ME4a LINE L1 5260 5654 -467 22 70 0 0 chr13 26755739 26755782 -75117387 + AT_rich Low_complexity Low_complexity 1 43 0 305 261 39 46 chr13 26755823 26755976 -75117193 + L1ME4a LINE L1 5964 6115 -6 304 235 0 0 chr13 26757563 26757631 -75115538 + MER92C LTR ERV1 483 550 -4 200 214 0 0 chr13 26758022 26758064 -75115105 + MIR SINE MIR 99 140 -122 2340 103 0 0 chr13 26758158 26758460 -75114709 - AluSx SINE Alu -10 302 1 3551 155 11 16 chr13 26758476 26759113 -75114056 - L1MB7 LINE L1 0 6184 5551 22 56 0 0 chr13 26759508 26759544 -75113625 + AT_rich Low_complexity Low_complexity 1 36 0 243 389 24 8 chr13 26759557 26759683 -75113486 - L2 LINE L2 -219 3053 2926 356 338 29 38 chr13 26759738 26759978 -75113191 - L2 LINE L2 -815 2499 2262 1232 134 51 24 chr13 26762531 26762784 -75110385 - L1MA4 LINE L1 -15 6285 6026 318 203 159 11 chr13 26763195 26763327 -75109842 - L1MD3 LINE L1 -11 7984 6192 5370 168 39 26 chr13 26763328 26764487 -75108682 + Ricksha_a DNA DNA 35 1176 -10 1364 191 78 58 chr13 26764494 26764908 -75108261 - L1MD3 LINE L1 -140 7855 5808 1587 203 75 17 chr13 26765243 26765379 -75107790 + MLT1A1 LTR MaLR 1 128 -237 2382 99 0 6 chr13 26765379 26765693 -75107476 + AluSq SINE Alu 1 312 -1 1587 203 75 17 chr13 26765693 26765901 -75107268 + MLT1A1 LTR MaLR 128 365 0 25 0 0 0 chr13 26766560 26766585 -75106584 + AT_rich Low_complexity Low_complexity 1 25 0 380 274 27 41 chr13 26766884 26767030 -75106139 + L1MDa LINE L1 2440 2583 -3957 512 282 135 71 chr13 26767032 26767468 -75105701 + L1ME LINE L1 141 604 -5601 247 220 77 18 chr13 26767754 26767922 -75105247 + L1ME LINE L1 2086 2263 -4133 513 132 0 0 chr13 26767933 26768009 -75105160 + AluSg/x SINE Alu 218 293 -16 198 0 0 0 chr13 26768015 26768037 -75105132 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 266 50 25 0 chr13 26768036 26768076 -75105093 + (TA)n Simple_repeat Simple_repeat 1 41 0 1904 248 84 29 chr13 26768080 26769079 -75104090 + L1ME LINE L1 2233 3286 -2929 2536 252 62 44 chr13 26769083 26770171 -75102998 + L1ME LINE L1 3669 4783 -1432 2448 66 3 0 chr13 26770171 26770474 -75102695 + AluSc SINE Alu 5 308 -1 2536 252 62 44 chr13 26770474 26770609 -75102560 + L1ME LINE L1 4783 4914 -1301 4393 150 13 4 chr13 26770609 26771314 -75101855 + MER50 LTR ERV1 1 711 -23 585 238 104 19 chr13 26771323 26771646 -75101523 + L1ME LINE L1 4919 5284 -931 346 211 105 34 chr13 26771730 26771941 -75101228 + L1ME LINE L1 5285 5506 -725 422 279 87 38 chr13 26771956 26772139 -75101030 + L1M4 LINE L1 2732 2923 -3223 205 164 18 18 chr13 26772289 26772344 -75100825 + GA-rich Low_complexity Low_complexity 3 57 0 511 314 81 50 chr13 26772465 26772847 -75100322 + L1M4 LINE L1 3385 3778 -2368 507 265 35 4 chr13 26772996 26773226 -75099943 + L1M4 LINE L1 3816 4052 -2094 36596 34 3 30 chr13 26773636 26779175 -75093994 - L1PA4 LINE L1 -11 6161 835 683 110 0 0 chr13 26779173 26779273 -75093896 - L1PA4 LINE L1 -6043 103 4 * 5806 172 13 9 chr13 26779317 26781346 -75091823 + L1PA16 LINE L1 4125 6157 -9 1098 64 0 0 chr13 26781367 26781507 -75091662 + AluY SINE Alu 172 311 0 414 0 0 0 chr13 26782103 26782149 -75091020 + (CA)n Simple_repeat Simple_repeat 2 47 0 2541 176 61 32 chr13 26783325 26784177 -75088992 + MER45B DNA AcHobo 1 942 -639 2752 17 0 0 chr13 26784177 26784478 -75088691 - AluYa5 SINE Alu -10 301 1 2541 176 61 32 chr13 26784478 26784577 -75088592 + MER45B DNA AcHobo 942 1037 -3 219 374 35 17 chr13 26784579 26784694 -75088475 + L2 LINE L2 3188 3304 -9 329 315 47 16 chr13 26784726 26784853 -75088316 + L3 LINE CR1 1006 1136 -441 272 339 36 18 chr13 26784855 26784967 -75088202 + MIR SINE MIR 48 161 -101 7815 85 9 1 chr13 26785185 26786314 -75086855 - L1P LINE L1 -2758 3388 2251 381 279 50 37 chr13 26786426 26786587 -75086582 - L1MC4a LINE L1 -1945 5863 5701 192 383 0 82 chr13 26787183 26787366 -75085803 + L2 LINE L2 296 463 -2851 213 401 14 24 chr13 26787438 26787645 -75085524 + L2 LINE L2 542 746 -2568 1530 188 47 0 chr13 26787908 26788342 -75084827 + L1MC/D LINE L1 5132 5588 -743 308 252 154 8 chr13 26788528 26788777 -75084392 + L1ME LINE L1 1244 1526 -5004 914 191 144 30 chr13 26788789 26789025 -75084144 + MSTA LTR MaLR 1 263 -165 1232 134 51 24 chr13 26790112 26790365 -75082804 - L1MA4 LINE L1 -15 6285 6026 322 227 182 15 chr13 26790776 26790908 -75082261 - L1MD2 LINE L1 -14 6345 6192 5009 168 39 26 chr13 26790909 26792068 -75081101 + Ricksha_a DNA DNA 38 1176 -10 1254 191 78 58 chr13 26792075 26792489 -75080680 - L1MD3 LINE L1 -140 7855 5808 1574 203 75 17 chr13 26792824 26792960 -75080209 + MLT1A1 LTR MaLR 1 128 -237 2421 98 0 6 chr13 26792960 26793275 -75079894 + AluSq SINE Alu 1 313 0 1574 203 75 17 chr13 26793275 26793483 -75079686 + MLT1A1 LTR MaLR 128 365 0 25 0 0 0 chr13 26794142 26794167 -75079002 + AT_rich Low_complexity Low_complexity 1 25 0 373 274 17 63 chr13 26794437 26794612 -75078557 + L1ME LINE L1 2417 2583 -3957 386 282 135 71 chr13 26794614 26795050 -75078119 + L1ME LINE L1 141 604 -5601 509 238 65 6 chr13 26795336 26795504 -75077665 + L1ME LINE L1 2086 2263 -4133 518 132 0 0 chr13 26795515 26795591 -75077578 + AluS SINE Alu 221 296 -16 234 0 0 0 chr13 26795597 26795623 -75077546 + (TC)n Simple_repeat Simple_repeat 2 27 0 202 56 56 0 chr13 26795622 26795658 -75077511 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 1665 249 84 29 chr13 26795658 26796656 -75076513 + L1ME LINE L1 2234 3286 -2929 2017 246 59 49 chr13 26796660 26797738 -75075431 + L1ME LINE L1 3669 4757 -1458 2258 105 3 3 chr13 26797750 26798054 -75075115 + AluSx SINE Alu 5 308 -4 189 265 258 13 chr13 26798079 26798230 -75074939 - MER5A DNA MER1_type -1 188 1 523 266 89 128 chr13 26798293 26798538 -75074631 + L2 LINE L2 2536 2789 -524 678 85 0 0 chr13 26798538 26798632 -75074537 + L1MB5 LINE L1 6075 6168 -6 523 266 89 128 chr13 26798632 26799138 -75074031 + L2 LINE L2 2789 3275 -38 2175 124 7 0 chr13 26800121 26800427 -75072742 - AluSq SINE Alu -5 308 1 1540 187 34 24 chr13 26800427 26800721 -75072448 - AluJo SINE Alu -15 297 1 512 220 63 13 chr13 26801808 26801967 -75071202 - LTR33A LTR ERVL -13 510 344 901 139 63 67 chr13 26802664 26802820 -75070349 + L1MD2 LINE L1 6137 6293 -66 2005 92 4 26 chr13 26802820 26803093 -75070076 - AluSx SINE Alu -10 302 36 901 139 63 67 chr13 26803093 26803159 -75070010 + L1MD2 LINE L1 6293 6358 -1 180 0 0 0 chr13 26804108 26804128 -75069041 + (CAGGG)n Simple_repeat Simple_repeat 3 22 0 246 328 82 8 chr13 26804248 26804382 -75068787 + L2 LINE L2 2560 2703 -611 189 0 0 0 chr13 26804463 26804484 -75068685 + (A)n Simple_repeat Simple_repeat 1 21 0 457 224 105 28 chr13 26804510 26804653 -75068516 - LTR16C LTR ERVL -21 470 317 281 285 41 49 chr13 26804842 26804965 -75068204 + MER5B DNA MER1_type 57 178 0 240 319 18 62 chr13 26805117 26805154 -75068015 + L2 LINE L2 3163 3200 -72 2519 61 0 16 chr13 26805154 26805464 -75067705 + AluY SINE Alu 1 305 -6 240 319 18 62 chr13 26805464 26805539 -75067630 + L2 LINE L2 3200 3270 -2 198 205 0 0 chr13 26805657 26805696 -75067473 - L2 LINE L2 -12 3301 3263 256 246 0 43 chr13 26806554 26806623 -75066546 - L2 LINE L2 0 3272 3207 2014 106 10 3 chr13 26806799 26807091 -75066078 - AluSp SINE Alu -19 294 1 189 295 77 13 chr13 26808767 26808845 -75064324 + MIR3 SINE MIR 77 159 -49 34594 34 3 1 chr13 26811849 26817014 -75056155 + L1PA4 LINE L1 973 6147 -8 461 261 35 4 chr13 26817422 26817652 -75055517 - L1M4 LINE L1 -2094 4052 3816 513 314 81 50 chr13 26817801 26818183 -75054986 - L1M4 LINE L1 -2368 3778 3385 205 164 18 18 chr13 26818304 26818359 -75054810 + CT-rich Low_complexity Low_complexity 3 57 0 422 279 87 38 chr13 26818509 26818692 -75054477 - L1M4 LINE L1 -3223 2923 2732 290 211 94 35 chr13 26818707 26818878 -75054291 - L1M4 LINE L1 -727 5437 5256 342 138 0 0 chr13 26819002 26819060 -75054109 - L1M4 LINE L1 -931 5215 5158 499 232 74 26 chr13 26819135 26819325 -75053844 - L1M4 LINE L1 -1098 5048 4850 4176 149 13 4 chr13 26819334 26820039 -75053130 - MER50 LTR ERV1 -23 711 1 284 286 50 0 chr13 26820039 26820179 -75052990 - L1M4 LINE L1 -1301 4845 4699 2729 26 0 0 chr13 26820183 26820488 -75052681 - AluYa5 SINE Alu -6 305 1 579 121 10 10 chr13 26820488 26820587 -75052582 + MER45 DNA AcHobo 1480 1578 -3 226 374 35 17 chr13 26820589 26820704 -75052465 + L2 LINE L2 3188 3304 -9 337 315 47 16 chr13 26820736 26820863 -75052306 + L3 LINE CR1 1006 1136 -441 266 339 36 18 chr13 26820865 26820977 -75052192 + MIR SINE MIR 48 161 -101 200 316 151 19 chr13 26821115 26821321 -75051848 + L3 LINE CR1 1219 1451 -126 328 271 77 71 chr13 26821412 26821582 -75051587 - MIR SINE MIR -14 248 78 222 37 0 0 chr13 26822583 26822610 -75050559 + (CA)n Simple_repeat Simple_repeat 2 28 0 1928 149 0 7 chr13 26824495 26824790 -75048379 + AluJb SINE Alu 2 294 -18 207 0 0 0 chr13 26825092 26825115 -75048054 + (C)n Simple_repeat Simple_repeat 1 23 0 402 121 0 0 chr13 26825150 26825216 -75047953 + (C)n Simple_repeat Simple_repeat 1 66 0 284 235 0 0 chr13 26825393 26825461 -75047708 + MER92C LTR ERV1 483 550 -4 202 214 0 0 chr13 26825852 26825894 -75047275 + MIR SINE MIR 99 140 -122 2312 117 0 7 chr13 26825988 26826295 -75046874 - AluSx SINE Alu -7 305 1 324 0 0 0 chr13 26826497 26826533 -75046636 + (TG)n Simple_repeat Simple_repeat 1 36 0 1978 123 0 0 chr13 26826538 26826806 -75046363 - AluSx SINE Alu -30 282 15 222 283 0 0 chr13 26827855 26827908 -75045261 + CT-rich Low_complexity Low_complexity 3 55 0 369 214 69 23 chr13 26828402 26828533 -75044636 + MER103 DNA DNA 21 157 -9 432 311 8 8 chr13 26828808 26828927 -75044242 - MIR3 SINE MIR -36 172 54 356 85 0 0 chr13 26829634 26829681 -75043488 - U6 snRNA snRNA -60 47 1 201 263 18 0 chr13 26829888 26829945 -75043224 + L2 LINE L2 2182 2239 -1075 386 323 117 40 chr13 26830219 26830871 -75042298 + L2 LINE L2 2544 3271 -1 22 0 0 0 chr13 26832970 26832992 -75040177 + AT_rich Low_complexity Low_complexity 1 22 0 815 188 18 0 chr13 26833175 26833345 -75039824 + MLT1B LTR MaLR 1 173 -217 526 158 0 83 chr13 26833347 26833467 -75039702 + FRAM SINE Alu 66 175 -1 671 234 138 17 chr13 26833470 26833660 -75039509 + MLT1B LTR MaLR 200 426 -41 437 0 0 19 chr13 26833660 26833714 -75039455 + (TTG)n Simple_repeat Simple_repeat 2 54 0 671 234 138 17 chr13 26833714 26833762 -75039407 + MLT1B LTR MaLR 426 467 0 181 262 95 36 chr13 26834321 26834405 -75038764 - MIR3 SINE MIR -5 203 115 2191 112 0 3 chr13 26834907 26835201 -75037968 + AluSx SINE Alu 1 293 -19 376 221 115 29 chr13 26838601 26838705 -75034464 - L2 LINE L2 -2 3311 3199 1870 141 0 7 chr13 26838740 26839023 -75034146 + AluJb SINE Alu 5 285 -27 47 19 0 0 chr13 26839023 26839077 -75034092 + AT_rich Low_complexity Low_complexity 1 54 0 1406 109 12 51 chr13 26839232 26839488 -75033681 + Tigger2a DNA MER2_type 1 246 -188 519 209 0 0 chr13 26839485 26839576 -75033593 + Tigger2a DNA MER2_type 354 444 0 * 734 276 132 0 chr13 26839581 26839824 -75033345 - L2 LINE L2 -338 2976 2702 483 202 57 8 chr13 26839824 26839948 -75033221 - L1MB8 LINE L1 0 6178 6049 1838 225 56 56 chr13 26839951 26840185 -75032984 - L1PA13 LINE L1 -2 6161 5928 2803 174 65 12 chr13 26840185 26840554 -75032615 - L1MB8 LINE L1 -250 5934 5586 2391 91 0 0 chr13 26840554 26840850 -75032319 - AluSg SINE Alu -11 299 4 2803 174 65 12 chr13 26840850 26841505 -75031664 - L1MB8 LINE L1 -598 5586 4858 1056 253 41 15 chr13 26841505 26841608 -75031561 - L2 LINE L2 -599 2715 2616 2240 156 55 103 chr13 26841608 26842154 -75031015 - MLT2B1 LTR ERVL 0 520 1 1056 253 41 15 chr13 26842154 26842319 -75030850 - L2 LINE L2 -698 2616 2440 1956 174 67 5 chr13 26843216 26843589 -75029580 - MSTD LTR MaLR 0 396 1 345 229 259 0 chr13 26844764 26844895 -75028274 + L1ME4a LINE L1 5831 5995 -126 431 274 18 58 chr13 26845017 26845133 -75028036 + L1MC4 LINE L1 5694 5798 -2010 2342 127 42 3 chr13 26845133 26845494 -75027675 + THE1C LTR MaLR 1 375 0 431 274 18 58 chr13 26845494 26845603 -75027566 + L1MC4 LINE L1 5798 5910 -1898 21 0 0 0 chr13 26845716 26845737 -75027432 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 26845813 26845834 -75027335 + AT_rich Low_complexity Low_complexity 1 21 0 291 137 20 0 chr13 26846683 26846738 -75026431 + L2 LINE L2 3217 3313 0 1885 216 45 2 chr13 26847291 26847763 -75025406 + Charlie4a DNA MER1_type 17 508 0 485 288 56 68 chr13 26847980 26848230 -75024939 + MIR SINE MIR 1 247 -15 952 260 41 4 chr13 26848336 26848582 -75024587 + MIR SINE MIR 8 262 0 275 366 101 26 chr13 26850379 26850647 -75022522 + L2 LINE L2 2684 2971 -343 3494 229 34 19 chr13 26850839 26852327 -75020842 - L1ME1 LINE L1 -5 6161 4644 2368 106 0 0 chr13 26852327 26852630 -75020539 - AluSx SINE Alu -9 303 1 3494 229 34 19 chr13 26852630 26852995 -75020174 - L1ME1 LINE L1 -1522 4644 4286 186 133 0 0 chr13 26853467 26853497 -75019672 + (TA)n Simple_repeat Simple_repeat 1 30 0 329 242 0 44 chr13 26853498 26853589 -75019580 + L1MC4 LINE L1 6614 6700 -1342 * 336 261 0 22 chr13 26853528 26853620 -75019549 - L1MC4 LINE L1 -1339 6703 6614 302 307 11 0 chr13 26853597 26853685 -75019484 + L1MC4 LINE L1 6615 6703 -1339 * 307 258 0 0 chr13 26853721 26853810 -75019359 + L1MC4 LINE L1 6616 6704 -1338 27 0 0 0 chr13 26853810 26853837 -75019332 + AT_rich Low_complexity Low_complexity 1 27 0 1459 124 0 0 chr13 26853837 26854031 -75019138 - AluSg/x SINE Alu -46 264 71 1586 163 50 0 chr13 26854061 26854319 -75018850 - AluJo SINE Alu -18 294 24 332 286 57 21 chr13 26855024 26855164 -75018005 - L1ME4a LINE L1 -12 6109 5965 1664 166 3 21 chr13 26855616 26855905 -75017264 + AluJb SINE Alu 1 284 -28 535 149 0 18 chr13 26855905 26856019 -75017150 + (GGGGA)n Simple_repeat Simple_repeat 1 112 0 203 265 181 12 chr13 26856069 26856152 -75017017 + L2 LINE L2 3125 3221 -51 433 127 42 127 chr13 26856346 26856464 -75016705 + FLAM_A SINE Alu 35 142 0 1211 231 75 14 chr13 26856639 26856999 -75016170 + MLT1H LTR MaLR 1 382 -167 2853 171 97 62 chr13 26857053 26857423 -75015746 + L1MD1 LINE L1 5410 5766 -476 2229 118 3 3 chr13 26857423 26857729 -75015440 + AluSx SINE Alu 1 306 -6 2853 171 97 62 chr13 26857729 26858161 -75015008 + L1MD1 LINE L1 5766 6240 -2 381 269 156 18 chr13 26858161 26858328 -75014841 + MIR SINE MIR 73 262 0 2121 115 7 7 chr13 26858564 26858869 -75014300 - AluSx SINE Alu -7 305 1 218 336 133 28 chr13 26858919 26859062 -75014107 - L3 LINE CR1 -3 1574 1417 499 274 0 9 chr13 26859319 26859425 -75013744 - L2 LINE L2 0 3272 3168 263 237 79 13 chr13 26860495 26860571 -75012598 - MIR SINE MIR -98 164 84 184 345 142 26 chr13 26862521 26862634 -75010535 - MIR3 SINE MIR -25 183 58 1311 191 9 10 chr13 26862640 26862963 -75010206 - MLT1A1 LTR MaLR -10 355 1 221 289 67 115 chr13 26864121 26864329 -75008840 - L3b LINE CR1 -93 1490 1293 202 323 75 21 chr13 26865404 26865497 -75007672 + MIR SINE MIR 19 116 -92 208 344 89 89 chr13 26865598 26865868 -75007301 + L2 LINE L2 3003 3272 0 1605 185 25 4 chr13 26868496 26868615 -75004554 + AluJo SINE Alu 1 116 -196 201 39 0 0 chr13 26868615 26868641 -75004528 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 1605 185 25 4 chr13 26868641 26868797 -75004372 + AluJo SINE Alu 116 282 -30 213 253 80 27 chr13 26869242 26869317 -75003852 + MIR SINE MIR 52 130 -132 299 294 63 21 chr13 26870141 26870284 -75002885 + L1ME4a LINE L1 5607 5755 -2053 399 237 160 65 chr13 26870700 26870863 -75002306 + L1ME4a LINE L1 5788 5987 -134 333 0 0 0 chr13 26870863 26870900 -75002269 + (CA)n Simple_repeat Simple_repeat 2 38 0 399 237 160 65 chr13 26870900 26870998 -75002171 + L1ME4a LINE L1 5987 6074 -47 2064 59 3 69 chr13 26871945 26872235 -75000934 - AluY SINE Alu -16 295 25 800 194 18 0 chr13 26873926 26874096 -74999073 + MLT1B LTR MaLR 1 173 -217 526 158 0 83 chr13 26874098 26874218 -74998951 + FRAM SINE Alu 66 175 -1 666 243 115 12 chr13 26874221 26874412 -74998757 + MLT1B LTR MaLR 200 423 -44 377 20 0 20 chr13 26874412 26874463 -74998706 + (TTG)n Simple_repeat Simple_repeat 1 50 0 666 243 115 12 chr13 26874463 26874514 -74998655 + MLT1B LTR MaLR 423 467 0 974 175 7 0 chr13 26875441 26875595 -74997574 - AluSx SINE Alu -120 192 38 198 0 0 0 chr13 26876982 26877004 -74996165 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 249 348 22 0 chr13 26877006 26877098 -74996071 - L2 LINE L2 -8 3264 3171 3432 132 105 8 chr13 26877166 26877793 -74995376 + L1MA4A LINE L1 5609 6296 -7 201 229 25 147 chr13 26877842 26877999 -74995170 + MIR SINE MIR 92 229 -33 223 250 0 44 chr13 26878330 26878398 -74994771 + GA-rich Low_complexity Low_complexity 2 66 0 21 0 0 0 chr13 26878589 26878610 -74994559 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 26879578 26879603 -74993566 + (TC)n Simple_repeat Simple_repeat 1 25 0 380 292 50 8 chr13 26879940 26880060 -74993109 - L3b LINE CR1 -124 1459 1335 2300 96 0 0 chr13 26880293 26880584 -74992585 + AluSx SINE Alu 1 291 -21 508 257 44 34 chr13 26880586 26880792 -74992377 + L1MC4a LINE L1 4999 5206 -940 3665 40 0 0 chr13 26880792 26881271 -74991898 - L1P LINE L1 -4424 1722 1244 396 73 0 0 chr13 26881276 26881331 -74991838 - L1P LINE L1 -5983 163 109 5328 42 6 1 chr13 26881331 26881990 -74991179 + L1PA4 LINE L1 5491 6152 -3 1380 273 57 29 chr13 26881997 26882683 -74990486 + L1MC4a LINE L1 5348 6052 -1756 1179 267 11 62 chr13 26883174 26883720 -74989449 + L1MC5 LINE L1 6625 7142 -819 213 179 71 18 chr13 26883720 26883776 -74989393 + MIR SINE MIR 121 179 -83 1768 152 27 75 chr13 26884025 26884180 -74988989 - L1M1 LINE L1 -4833 2732 2571 2030 149 0 3 chr13 26884180 26884476 -74988693 - AluSq SINE Alu -18 295 1 1768 152 27 75 chr13 26884476 26884801 -74988368 - L1M1 LINE L1 -4994 2571 2275 193 29 29 29 chr13 26884912 26884947 -74988222 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 2151 102 14 0 chr13 26885017 26885310 -74987859 - AluSx SINE Alu -15 297 1 2007 130 7 0 chr13 26886095 26886387 -74986782 - AluSx SINE Alu -18 294 1 26 0 0 0 chr13 26886395 26886421 -74986748 + AT_rich Low_complexity Low_complexity 1 26 0 742 232 48 0 chr13 26886459 26886627 -74986542 - MER5B DNA MER1_type -1 177 2 4682 114 38 23 chr13 26886975 26887771 -74985398 - L1MA5 LINE L1 -2 6298 5491 1772 108 148 75 chr13 26888052 26888409 -74984760 + MSTA LTR MaLR 1 391 -37 2341 90 0 3 chr13 26888409 26888708 -74984461 - AluSc SINE Alu -11 298 1 1772 108 148 75 chr13 26888708 26888749 -74984420 + MSTA LTR MaLR 391 428 0 242 330 70 10 chr13 26888806 26888906 -74984263 - L2 LINE L2 -49 3264 3159 415 182 0 20 chr13 26889395 26889494 -74983675 + (TA)n Simple_repeat Simple_repeat 2 98 0 638 324 180 9 chr13 26889711 26890260 -74982909 - L2 LINE L2 -400 2914 2272 2235 49 3 11 chr13 26890364 26890687 -74982482 + AluY SINE Alu 1 321 0 1363 138 21 0 chr13 26892818 26893057 -74980112 + L1MA5A LINE L1 6054 6297 0 318 342 92 11 chr13 26893830 26894014 -74979155 + MIR SINE MIR 33 231 -31 447 364 145 27 chr13 26894474 26895490 -74977679 + L2 LINE L2 2143 3272 0 681 242 26 84 chr13 26896056 26896105 -74977064 + MER58A DNA MER1_type 1 51 -2369 618 188 31 8 chr13 26896105 26896233 -74976936 - FLAM_A SINE Alu -2 131 1 681 242 26 84 chr13 26896233 26896410 -74976759 + MER58A DNA MER1_type 51 214 -10 282 237 26 13 chr13 26896849 26896925 -74976244 + GA-rich Low_complexity Low_complexity 2 78 0 3959 160 24 20 chr13 26898743 26899493 -74973676 - L1MB2 LINE L1 -8 6163 5411 453 150 0 0 chr13 26899493 26899573 -74973596 - L1MB2 LINE L1 -1611 4535 4456 236 323 106 43 chr13 26899977 26900212 -74972957 - L2 LINE L2 -815 2499 2250 22 35 0 0 chr13 26900412 26900441 -74972728 + AT_rich Low_complexity Low_complexity 1 29 0 5676 127 13 14 chr13 26900441 26902200 -74970969 - L1PA15 LINE L1 0 6165 4400 380 258 88 61 chr13 26902800 26902865 -74970304 + MER20B DNA MER1_type 5 67 -152 180 77 0 0 chr13 26902865 26902891 -74970278 + (TTGG)n Simple_repeat Simple_repeat 3 28 0 380 258 88 61 chr13 26902891 26903015 -74970154 + MER20B DNA MER1_type 67 219 0 3408 165 27 2 chr13 26904021 26904610 -74968559 + MER6A DNA MER2_type 1 604 -1 213 167 0 0 chr13 26904610 26904646 -74968523 + (TA)n Simple_repeat Simple_repeat 2 37 0 577 118 42 0 chr13 26907363 26907482 -74965687 + (CCTCG)n Simple_repeat Simple_repeat 4 127 0 343 314 151 57 chr13 26907585 26908043 -74965126 - L1M2 LINE L1 -5584 1265 765 473 84 127 0 chr13 26908924 26908995 -74964174 - MADE1 DNA Mariner 0 80 1 352 242 88 144 chr13 26909252 26909446 -74963723 + MER5B DNA MER1_type 1 183 -6 320 187 0 0 chr13 26909738 26909813 -74963356 + L1MB7 LINE L1 6110 6184 0 2209 81 18 0 chr13 26910091 26910374 -74962795 - AluSx SINE Alu -16 296 9 520 238 131 60 chr13 26910975 26911257 -74961912 - MLT1D LTR MaLR -2 465 164 2063 188 183 2 chr13 26911263 26911732 -74961437 - MER89 LTR ERV1 0 559 6 583 211 45 64 chr13 26911733 26911889 -74961280 - MLT1D LTR MaLR -352 153 1 212 339 65 0 chr13 26912755 26912817 -74960352 - L2 LINE L2 -64 3208 3143 769 304 40 8 chr13 26912840 26913090 -74960079 - MIR SINE MIR 0 262 5 284 259 326 0 chr13 26913319 26913466 -74959703 - L2 LINE L2 -97 3216 3022 * 364 304 27 9 chr13 26913450 26913562 -74959607 - L2 LINE L2 -730 2584 2471 3658 284 202 25 chr13 26913735 26915808 -74957361 - L2 LINE L2 -853 2461 22 1053 212 4 37 chr13 26916054 26916299 -74956870 - MER8 DNA MER2_type -1 238 2 711 266 100 22 chr13 26916372 26916601 -74956568 + MIR SINE MIR 1 247 -15 190 208 42 0 chr13 26916892 26916940 -74956229 - L2 LINE L2 -219 3053 3004 251 341 0 0 chr13 26917324 26917409 -74955760 - MER117 DNA MER1_type -49 148 64 483 305 155 13 chr13 26917425 26917651 -74955518 - MIR SINE MIR 0 262 5 21 0 0 0 chr13 26918362 26918383 -74954786 + AT_rich Low_complexity Low_complexity 1 21 0 494 322 121 0 chr13 26919068 26919242 -74953927 + MIR SINE MIR 3 197 -65 220 262 254 32 chr13 26919526 26919652 -74953517 - L2 LINE L2 -22 3291 3138 21 0 0 0 chr13 26920011 26920032 -74953137 + AT_rich Low_complexity Low_complexity 1 21 0 3082 246 22 1 chr13 26920042 26920848 -74952321 + L1ME LINE L1 3905 4727 -1419 242 310 35 11 chr13 26920848 26920935 -74952234 - MER21B LTR ERV1 -79 784 696 3123 184 12 0 chr13 26920935 26921446 -74951723 + Tigger7 DNA MER2_type 1 517 -216 1064 97 28 0 chr13 26921448 26921593 -74951576 + AluSq/x SINE Alu 1 149 -164 1550 106 65 12 chr13 26921593 26921839 -74951330 + Tigger7 DNA MER2_type 2229 2487 0 2190 209 88 81 chr13 26921839 26922463 -74950706 - MER21B LTR ERV1 -166 697 66 2435 145 33 9 chr13 26922463 26922883 -74950286 + MSTB1 LTR MaLR 3 432 0 2190 209 88 81 chr13 26922883 26922950 -74950219 - MER21B LTR ERV1 -797 66 1 1477 208 110 25 chr13 26922951 26923389 -74949780 + L1ME LINE L1 4724 5198 -948 306 50 0 0 chr13 26923495 26923535 -74949634 + (CA)n Simple_repeat Simple_repeat 1 40 0 1020 232 102 34 chr13 26923535 26924204 -74948965 + L1MB7 LINE L1 5454 6184 0 309 275 12 0 chr13 26924210 26924290 -74948879 + GA-rich Low_complexity Low_complexity 3 83 0 1183 332 109 20 chr13 26924517 26925475 -74947694 - L2 LINE L2 0 3313 2286 379 264 95 125 chr13 26925796 26926164 -74947005 + MLT1H LTR MaLR 23 379 -170 307 375 148 8 chr13 26926398 26926654 -74946515 - L2 LINE L2 -1076 2238 1947 220 344 15 53 chr13 26926665 26926796 -74946373 - MIR SINE MIR -63 145 20 22 35 0 0 chr13 26926840 26926869 -74946300 + AT_rich Low_complexity Low_complexity 1 29 0 22 43 0 21 chr13 26929271 26929292 -74943877 + AT_rich Low_complexity Low_complexity 1 21 -25 2294 104 0 0 chr13 26929292 26929590 -74943579 - AluSx SINE Alu -14 298 1 22 43 0 21 chr13 26929590 26929615 -74943554 + AT_rich Low_complexity Low_complexity 21 46 0 294 95 0 0 chr13 26929719 26929761 -74943408 + (CA)n Simple_repeat Simple_repeat 2 43 0 341 310 143 16 chr13 26929989 26930234 -74942935 + L1ME LINE L1 5304 5579 -587 488 259 89 35 chr13 26930248 26930453 -74942716 - L1ME3 LINE L1 0 6334 5961 292 125 0 0 chr13 26930454 26930502 -74942667 - L1MB8 LINE L1 -6 6172 6125 2526 75 0 0 chr13 26930555 26930862 -74942307 - AluY SINE Alu -4 307 1 4722 84 58 36 chr13 26930866 26931619 -74941550 - L1PA13 LINE L1 -8 6155 5386 * 17104 182 17 11 chr13 26931618 26931816 -74941353 - L1PA13 LINE L1 -1537 5260 5065 279 0 0 0 chr13 26931816 26931847 -74941322 + (TG)n Simple_repeat Simple_repeat 1 31 0 17104 182 17 11 chr13 26931847 26935787 -74937382 - L1PA13 LINE L1 -1732 5065 1079 328 258 42 8 chr13 26935785 26935905 -74937264 - L1MB8 LINE L1 -40 6138 6015 * 4020 222 67 74 chr13 26935924 26937857 -74935312 - L1MDa LINE L1 -4443 2097 23 1938 171 0 0 chr13 26939137 26939436 -74933733 + AluJb SINE Alu 3 301 -11 276 292 12 47 chr13 26939653 26939747 -74933422 - MIR SINE MIR -83 125 34 433 330 153 11 chr13 26939953 26940235 -74932934 - L1MC4a LINE L1 -237 5933 5612 225 178 44 0 chr13 26940732 26940777 -74932392 + L1ME LINE L1 851 897 -5475 2348 95 3 0 chr13 26940836 26941141 -74932028 + AluSq SINE Alu 1 306 -7 1851 85 4 0 chr13 26941422 26941658 -74931511 + AluSq SINE Alu 70 306 -7 319 205 33 120 chr13 26941926 26941990 -74931179 + L1ME LINE L1 1673 1741 -4768 183 42 0 0 chr13 26941990 26942014 -74931155 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1731 171 7 4 chr13 26942016 26942297 -74930872 - AluSx SINE Alu -30 282 1 319 205 33 120 chr13 26942297 26942369 -74930800 + L1ME LINE L1 1742 1923 -4586 7482 229 59 45 chr13 26942481 26945719 -74927450 + L1ME LINE L1 2138 5395 -1005 1703 166 15 0 chr13 26945719 26945990 -74927179 + AluJo SINE Alu 1 275 -37 7482 229 59 45 chr13 26945990 26946623 -74926546 + L1ME LINE L1 5395 6018 -382 408 74 0 0 chr13 26946624 26946678 -74926491 - L1P LINE L1 -5984 162 109 5445 37 1 8 chr13 26946678 26947346 -74925823 + L1PA4 LINE L1 5491 6154 -1 274 100 0 0 chr13 26947349 26947389 -74925780 + L1ME LINE L1 6005 6044 -354 3226 163 34 42 chr13 26947465 26947502 -74925667 + L1MB8 LINE L1 5431 5467 -711 2907 107 16 5 chr13 26947502 26947931 -74925238 + MER57B LTR ERV1 1 434 0 3226 163 34 42 chr13 26947931 26948543 -74924626 + L1MB8 LINE L1 5467 6075 -103 265 276 22 104 chr13 26948548 26948682 -74924487 + LTR35 LTR ERV1 1 123 -495 617 243 94 58 chr13 26948796 26949133 -74924036 + LTR35 LTR ERV1 350 617 -1 561 139 20 0 chr13 26949145 26949246 -74923923 + L1MB7 LINE L1 6082 6184 0 228 103 0 0 chr13 26949468 26949507 -74923662 - MER57A LTR ERV1 0 403 365 775 236 158 42 chr13 26949539 26949899 -74923270 - MER57B LTR ERV1 -23 411 10 614 276 66 17 chr13 26949960 26950141 -74923028 + MIR SINE MIR 59 248 -14 2818 13 0 0 chr13 26950848 26951157 -74922012 - AluYb8 SINE Alu -9 309 1 7452 29 0 0 chr13 26952256 26953615 -74919554 - L1PA4 LINE L1 -4 6151 4786 575 287 63 36 chr13 26954754 26954977 -74918192 - MIR SINE MIR 0 262 34 24 32 0 0 chr13 26955020 26955051 -74918118 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 26955425 26955456 -74917713 + AT_rich Low_complexity Low_complexity 1 31 0 515 267 53 13 chr13 26957201 26957351 -74915818 + LTR16A1 LTR ERVL 299 454 -3 2260 100 0 0 chr13 26957544 26957834 -74915335 + AluSx SINE Alu 1 290 -22 2283 114 0 0 chr13 26958114 26958420 -74914749 + AluSx SINE Alu 1 306 -6 342 0 0 0 chr13 26959120 26959158 -74914011 + (TG)n Simple_repeat Simple_repeat 2 39 0 306 293 47 9 chr13 26959349 26959455 -74913714 + L2 LINE L2 3204 3313 0 254 296 59 53 chr13 26959722 26959874 -74913295 + L2 LINE L2 2892 3044 -228 1152 192 12 41 chr13 26959928 26960173 -74912996 + MER8 DNA MER2_type 2 239 0 1057 157 60 23 chr13 26961775 26961924 -74911245 - L1PA16 LINE L1 -14 6152 5991 2271 119 0 0 chr13 26961924 26962226 -74910943 - AluSx SINE Alu -10 302 1 1057 157 60 23 chr13 26962226 26962292 -74910877 - L1PA16 LINE L1 -175 5991 5929 4866 135 29 4 chr13 26962294 26963347 -74909822 - L1PA16 LINE L1 -138 6028 4950 540 336 37 8 chr13 26963355 26963599 -74909570 - L3 LINE CR1 -396 1181 931 15164 155 45 19 chr13 26963696 26966189 -74906980 + L1M1 LINE L1 15 2583 -4982 2068 146 0 0 chr13 26966189 26966484 -74906685 + AluSq SINE Alu 1 295 -18 15164 155 45 19 chr13 26966484 26966639 -74906530 + L1M1 LINE L1 2583 2732 -4833 215 179 71 18 chr13 26966888 26966944 -74906225 - MIR SINE MIR -83 179 121 1329 266 17 62 chr13 26966944 26967535 -74905634 - L1MC5 LINE L1 -819 7142 6575 1564 273 57 29 chr13 26967981 26968667 -74904502 - L1MC4a LINE L1 -1756 6052 5348 5438 36 5 1 chr13 26968674 26969334 -74903835 - L1PA4 LINE L1 -3 6152 5491 416 73 0 0 chr13 26969334 26969389 -74903780 + L1P LINE L1 109 163 -5983 3833 40 0 0 chr13 26969394 26969873 -74903296 + L1P LINE L1 1244 1722 -4424 1412 236 27 50 chr13 26969873 26970081 -74903088 - L1 LINE L1 -940 5206 4995 2259 110 0 0 chr13 26970081 26970372 -74902797 - AluSx SINE Alu -21 291 1 1412 236 27 50 chr13 26970372 26970604 -74902565 - L1 LINE L1 -1151 4995 4776 308 283 43 11 chr13 26970631 26970818 -74902351 - L1MC4a LINE L1 -915 5231 5039 633 300 70 0 chr13 26971161 26971361 -74901808 + MIR SINE MIR 49 262 0 371 288 79 58 chr13 26971350 26971489 -74901680 - MIR SINE MIR -101 161 20 * 21 0 0 0 chr13 26971579 26971600 -74901569 + AT_rich Low_complexity Low_complexity 1 21 0 2114 121 0 0 chr13 26971611 26971925 -74901244 - AluSx SINE Alu 0 314 1 242 217 14 0 chr13 26973508 26973577 -74899592 + CT-rich Low_complexity Low_complexity 3 72 0 206 214 24 0 chr13 26973800 26973842 -74899327 - L2 LINE L2 -16 3297 3255 21 0 0 0 chr13 26974629 26974650 -74898519 + AT_rich Low_complexity Low_complexity 1 21 0 245 297 16 0 chr13 26975096 26975160 -74898009 - L2 LINE L2 -75 3197 3133 21 0 0 0 chr13 26975175 26975196 -74897973 + AT_rich Low_complexity Low_complexity 1 21 0 2103 116 0 0 chr13 26976849 26977157 -74896012 + AluSx SINE Alu 1 308 0 2687 33 0 0 chr13 26977476 26977782 -74895387 + AluY SINE Alu 1 306 -5 360 319 85 21 chr13 26979472 26979613 -74893556 + MER5B DNA MER1_type 6 155 -23 279 260 170 20 chr13 26980020 26980120 -74893049 - L2 LINE L2 -12 3260 3146 2066 112 0 34 chr13 26980697 26981018 -74892151 + AluSx SINE Alu 1 311 0 2861 3 0 3 chr13 26981196 26981531 -74891638 + AluYa5 SINE Alu 1 334 0 239 288 14 0 chr13 26981773 26981846 -74891323 + MER5B DNA MER1_type 86 159 -19 303 80 140 0 chr13 26982015 26982065 -74891104 + L1PA8 LINE L1 5940 5996 -158 1205 79 0 6 chr13 26982165 26982330 -74890839 + L1PA8 LINE L1 6008 6171 -1 336 328 0 8 chr13 26982344 26982463 -74890706 - MER5A DNA MER1_type -56 133 16 504 291 107 22 chr13 26983625 26983854 -74889315 + MIR SINE MIR 2 250 -12 1381 173 103 11 chr13 26983868 26984139 -74889030 - AluJb SINE Alu -12 300 5 456 287 7 22 chr13 26985336 26985472 -74887697 + MIR SINE MIR 20 153 -109 21 36 0 0 chr13 26985882 26985910 -74887259 + AT_rich Low_complexity Low_complexity 1 28 0 1681 159 4 0 chr13 26985910 26986162 -74887007 - AluSx SINE Alu -22 290 38 198 0 0 0 chr13 26987549 26987571 -74885598 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 249 348 22 0 chr13 26987573 26987665 -74885504 - L2 LINE L2 -8 3264 3171 3466 132 105 8 chr13 26987733 26988360 -74884809 + L1MA4A LINE L1 5609 6296 -7 203 229 25 147 chr13 26988409 26988566 -74884603 + MIR SINE MIR 92 229 -33 239 235 0 44 chr13 26988897 26988965 -74884204 + GA-rich Low_complexity Low_complexity 2 66 0 21 0 0 0 chr13 26989156 26989177 -74883992 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 26990145 26990170 -74882999 + (TC)n Simple_repeat Simple_repeat 1 25 0 384 292 50 8 chr13 26990507 26990627 -74882542 - L3b LINE CR1 -124 1459 1335 2269 92 0 0 chr13 26990860 26991185 -74881984 + AluSx SINE Alu 1 325 0 384 235 168 13 chr13 26991705 26991854 -74881315 - MIR SINE MIR -51 211 40 2837 10 0 0 chr13 26993471 26993781 -74879388 + AluYb8 SINE Alu 1 310 -8 2291 86 7 7 chr13 26993924 26994226 -74878943 - AluSx SINE Alu -10 302 1 2096 130 3 3 chr13 26994337 26994638 -74878531 - AluSq SINE Alu -12 301 1 403 297 60 22 chr13 26995219 26995404 -74877765 - MIR SINE MIR -64 198 7 191 345 9 43 chr13 26996202 26996318 -74876851 + L2 LINE L2 3190 3301 -12 432 0 0 0 chr13 26997150 26997198 -74875971 + (T)n Simple_repeat Simple_repeat 1 48 0 2153 204 91 12 chr13 26997811 26998380 -74874789 - LTR48B LTR ERV1 -30 614 1 1619 114 24 108 chr13 26998988 26999322 -74873847 + AluYb8 SINE Alu 1 306 -12 279 266 85 32 chr13 26999680 26999774 -74873395 - L2 LINE L2 -2 3270 3172 317 287 99 61 chr13 27000364 27000545 -74872624 - L1M2 LINE L1 -5894 955 768 245 279 0 0 chr13 27000782 27000843 -74872326 + (CG)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr13 27001063 27001085 -74872084 + GC_rich Low_complexity Low_complexity 1 22 0 2093 102 0 16 chr13 27001452 27001765 -74871404 - AluY SINE Alu -3 308 1 653 291 100 28 chr13 27001950 27002552 -74870617 + L1MC5 LINE L1 7260 7904 -57 21 0 0 0 chr13 27002564 27002585 -74870584 + AT_rich Low_complexity Low_complexity 1 21 0 1517 253 105 11 chr13 27002953 27003695 -74869474 - L1M4 LINE L1 -2887 3259 2448 976 236 8 37 chr13 27004622 27004863 -74868306 - MER8 DNA MER2_type -4 235 2 183 240 96 48 chr13 27004938 27005042 -74868127 - L2 LINE L2 -249 3023 2915 267 366 144 16 chr13 27006961 27007218 -74865951 - L2 LINE L2 -1078 2236 1947 215 322 7 59 chr13 27007192 27007360 -74865809 - MIR SINE MIR -63 145 20 * 22 35 0 0 chr13 27007405 27007434 -74865735 + AT_rich Low_complexity Low_complexity 1 29 0 2281 118 0 0 chr13 27008796 27009102 -74864067 - AluSx SINE Alu -6 306 1 2003 126 0 0 chr13 27009382 27009667 -74863502 - AluSx SINE Alu -22 290 6 2566 165 34 38 chr13 27009767 27010324 -74862845 + L1MB8 LINE L1 5521 6075 -103 261 323 0 0 chr13 27010577 27010670 -74862499 + LTR58 LTR ERV1 350 442 -237 419 279 41 14 chr13 27010767 27010914 -74862255 + LTR35 LTR ERV1 467 617 -1 465 136 34 11 chr13 27010926 27011014 -74862155 + L1MB8 LINE L1 6080 6169 -9 2369 188 38 13 chr13 27011132 27011663 -74861506 + L1MC3 LINE L1 7221 7764 -21 660 311 55 60 chr13 27012622 27013259 -74859910 - HAL1 LINE L1 -1871 636 3 661 248 7 0 chr13 27013516 27013661 -74859508 + FRAM SINE Alu 1 145 -31 4028 250 8 10 chr13 27013797 27014967 -74858202 + L1P LINE L1 1264 2430 -3716 269 67 22 22 chr13 27016784 27016829 -74856340 - L1PA7 LINE L1 -617 5537 5493 4150 79 3 18 chr13 27016829 27017426 -74855743 + L1PA7 LINE L1 5567 6154 0 1852 126 0 27 chr13 27017721 27018014 -74855155 + AluY SINE Alu 16 300 -11 2518 64 0 0 chr13 27018433 27018744 -74854425 - AluY SINE Alu 0 311 1 875 272 96 32 chr13 27018929 27019555 -74853614 + L1MC5 LINE L1 7260 7925 -36 1124 170 5 16 chr13 27019736 27019930 -74853239 + AluJo SINE Alu 87 278 -34 313 331 134 52 chr13 27020256 27020504 -74852665 + L3 LINE CR1 1095 1372 -205 1496 225 85 40 chr13 27020504 27020949 -74852220 + LTR40c LTR ERVL 1 465 0 313 331 134 52 chr13 27020949 27020990 -74852179 + L3 LINE CR1 1372 1408 -169 387 193 145 0 chr13 27021365 27021448 -74851721 - L1MC3 LINE L1 -477 7308 7214 4241 174 61 13 chr13 27022808 27023741 -74849428 - L1MC3 LINE L1 -21 7764 6787 31 44 0 0 chr13 27024363 27024408 -74848761 + AT_rich Low_complexity Low_complexity 1 45 0 404 335 101 33 chr13 27025575 27026031 -74847138 - L2 LINE L2 -457 2857 2371 231 36 0 0 chr13 27026031 27026059 -74847110 + (TGG)n Simple_repeat Simple_repeat 2 29 0 2086 41 8 19 chr13 27026778 27027045 -74846124 - AluY SINE Alu -8 303 40 215 238 36 36 chr13 27028039 27028123 -74845046 - MIR3 SINE MIR 0 208 125 855 196 63 74 chr13 27028872 27029143 -74844026 - L2 LINE L2 -4 3309 3042 * 1251 278 97 43 chr13 27029133 27029755 -74843414 - L2 LINE L2 -1050 2264 1610 367 319 9 9 chr13 27030475 27030588 -74842581 - MIR3 SINE MIR -35 173 61 23 0 0 0 chr13 27030591 27030614 -74842555 + AT_rich Low_complexity Low_complexity 1 23 0 389 267 19 0 chr13 27030618 27030723 -74842446 - MIR SINE MIR -3 259 153 751 181 87 0 chr13 27030905 27031043 -74842126 + MER5A DNA MER1_type 35 184 -5 1871 310 95 55 chr13 27031067 27031954 -74841215 + ERVL LTR ERVL 2256 3219 -2545 2209 62 66 3 chr13 27031954 27032242 -74840927 - AluY SINE Alu -5 306 1 1871 310 95 55 chr13 27032242 27032727 -74840442 + ERVL LTR ERVL 3219 3683 -2081 301 289 90 45 chr13 27033149 27033448 -74839721 - MLT1H LTR MaLR -200 349 1 326 341 98 0 chr13 27033544 27033667 -74839502 - L2 LINE L2 -8 3305 3171 334 294 128 0 chr13 27033698 27033807 -74839362 - MIR SINE MIR -87 175 53 194 303 45 84 chr13 27034491 27034646 -74838523 - MIR SINE MIR -77 185 37 644 266 36 39 chr13 27037001 27037220 -74835949 - MIR SINE MIR -46 216 2 1315 179 29 7 chr13 27037264 27037537 -74835632 + L1MB8 LINE L1 5891 6169 -9 253 359 54 74 chr13 27037552 27037903 -74835266 - L2 LINE L2 -101 3171 2828 1860 166 3 7 chr13 27038004 27038312 -74834857 - AluJo SINE Alu -5 307 1 2200 119 0 0 chr13 27039061 27039356 -74833813 - AluSx SINE Alu -17 295 1 35 71 0 0 chr13 27039735 27039805 -74833364 + AT_rich Low_complexity Low_complexity 1 70 0 257 350 0 16 chr13 27039969 27040092 -74833077 + CT-rich Low_complexity Low_complexity 5 125 0 204 40 0 0 chr13 27040346 27040371 -74832798 + (T)n Simple_repeat Simple_repeat 1 25 0 2340 162 29 10 chr13 27040654 27041068 -74832101 - MSTB LTR MaLR -4 422 1 2107 115 3 0 chr13 27041485 27041772 -74831397 + AluSp SINE Alu 1 288 -25 186 43 0 0 chr13 27041772 27041795 -74831374 + (TA)n Simple_repeat Simple_repeat 1 23 0 2276 114 3 0 chr13 27042248 27042555 -74830614 + AluSx SINE Alu 1 308 -4 2738 96 48 32 chr13 27042624 27042668 -74830501 - MLT2A1 LTR ERVL 0 444 402 2090 138 0 19 chr13 27042668 27042986 -74830183 + AluSx SINE Alu 1 312 0 2738 96 48 32 chr13 27042986 27043009 -74830160 - MLT2A1 LTR ERVL -42 402 381 315 0 0 0 chr13 27043009 27043044 -74830125 + (TA)n Simple_repeat Simple_repeat 1 35 0 2738 96 48 32 chr13 27043044 27043412 -74829757 - MLT2A1 LTR ERVL -63 381 1 2680 77 51 134 chr13 27043877 27044330 -74828839 + MLT2A2 LTR ERVL 1 411 -42 504 0 0 0 chr13 27044330 27044386 -74828783 + (TA)n Simple_repeat Simple_repeat 2 57 0 2680 77 51 134 chr13 27044386 27044424 -74828745 + MLT2A2 LTR ERVL 411 451 -2 359 181 0 14 chr13 27044750 27044822 -74828347 + L1MEd LINE L1 1181 1251 -4868 1246 227 61 76 chr13 27044958 27044993 -74828176 - L1M4 LINE L1 -2648 3498 3464 1485 148 9 4 chr13 27044993 27045222 -74827947 + AluJb SINE Alu 74 303 -9 1246 227 61 76 chr13 27045222 27045742 -74827427 - L1M4 LINE L1 -2682 3464 2951 1301 174 13 4 chr13 27045742 27045989 -74827180 + MER57A LTR ERV1 1 278 -156 775 135 53 2 chr13 27045955 27046137 -74827032 - L1M4 LINE L1 -3197 2949 2757 * 2498 179 18 53 chr13 27046138 27046613 -74826556 + MLT1C LTR MaLR 4 467 0 2082 231 26 25 chr13 27046613 27046660 -74826509 - L1M4 LINE L1 -3428 2718 2673 2437 145 79 13 chr13 27046660 27047052 -74826117 - MER47B DNA MER2_type 0 418 1 2082 231 26 25 chr13 27047052 27047607 -74825562 - L1M4 LINE L1 -3473 2673 2115 895 125 0 22 chr13 27047616 27047752 -74825417 + AluJo SINE Alu 2 134 -178 2114 145 10 3 chr13 27047872 27048182 -74824987 - AluSx SINE Alu 0 312 1 521 180 9 9 chr13 27048253 27048364 -74824805 - MER69 DNA AcHobo -416 2110 2000 * 1812 244 127 10 chr13 27048352 27048856 -74824313 - MER69 DNA AcHobo -1958 568 6 561 314 115 66 chr13 27049065 27049821 -74823348 + L2 LINE L2 2153 2945 -369 436 344 89 37 chr13 27049841 27050269 -74822900 + L2 LINE L2 2509 2958 -356 21 57 0 0 chr13 27050368 27050403 -74822766 + AT_rich Low_complexity Low_complexity 1 35 0 319 299 74 65 chr13 27050567 27050798 -74822371 + L3 LINE CR1 1333 1565 -12 273 29 0 0 chr13 27050940 27050974 -74822195 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 180 284 105 32 chr13 27051875 27051970 -74821199 + MER5A DNA MER1_type 40 141 -48 702 39 29 0 chr13 27052583 27052685 -74820484 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 201 39 0 0 chr13 27052687 27052713 -74820456 + (TCTCTG)n Simple_repeat Simple_repeat 2 27 0 312 321 12 75 chr13 27052759 27052999 -74820170 + MARNA DNA Mariner 348 572 -14 208 246 0 0 chr13 27055992 27056049 -74817120 + (TA)n Simple_repeat Simple_repeat 2 58 0 1069 81 0 32 chr13 27056735 27056920 -74816249 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 201 74 0 0 chr13 27056927 27056954 -74816215 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 202 235 20 0 chr13 27057054 27057105 -74816064 + GA-rich Low_complexity Low_complexity 4 55 0 193 146 18 127 chr13 27057208 27057263 -74815906 - L2 LINE L2 0 3313 3265 1273 270 106 23 chr13 27057386 27057473 -74815696 + LTR16A LTR ERVL 22 100 -350 2493 195 122 4 chr13 27057473 27057894 -74815275 + MLT2B2 LTR ERVL 1 482 -33 288 53 0 0 chr13 27057894 27057932 -74815237 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 2493 195 122 4 chr13 27057932 27057971 -74815198 + MLT2B2 LTR ERVL 482 515 0 1273 270 106 23 chr13 27057971 27058279 -74814890 + LTR16A LTR ERVL 100 450 0 1853 328 53 27 chr13 27058421 27059457 -74813712 + HERVL LTR ERVL 4225 5287 -367 992 243 65 11 chr13 27059738 27060014 -74813155 + LTR16A LTR ERVL 160 450 0 576 323 194 27 chr13 27060014 27060671 -74812498 - L2 LINE L2 -181 3132 2364 232 258 65 0 chr13 27060883 27060945 -74812224 - MER5A DNA MER1_type -113 76 11 426 287 79 24 chr13 27060977 27061141 -74812028 + MIR SINE MIR 36 208 -54 339 340 54 15 chr13 27062996 27063199 -74809970 + MIR SINE MIR 49 259 -3 2006 125 0 17 chr13 27063494 27063783 -74809386 - AluSx SINE Alu -28 284 1 3832 154 36 39 chr13 27063999 27064120 -74809049 + L1MC2 LINE L1 5593 5713 -631 922 237 90 88 chr13 27064120 27064656 -74808513 + MER34 LTR ERV1 5 541 -1 3832 154 36 39 chr13 27064656 27065279 -74807890 + L1MC2 LINE L1 5713 6335 -9 224 260 0 0 chr13 27065465 27065515 -74807654 + T-rich Low_complexity Low_complexity 1 50 0 3125 240 47 13 chr13 27065900 27066918 -74806251 - L1ME3 LINE L1 0 6162 5107 412 288 192 0 chr13 27066983 27067223 -74805946 - L1ME3 LINE L1 -1227 4919 4634 4308 261 104 61 chr13 27067283 27067606 -74805563 - HAL1 LINE L1 -5 2502 2194 2330 112 3 0 chr13 27067606 27067918 -74805251 - AluSq SINE Alu 0 313 1 4308 261 104 61 chr13 27067918 27068199 -74804970 - HAL1 LINE L1 -313 2194 1927 1811 177 18 81 chr13 27068199 27068584 -74804585 - MLT1A1 LTR MaLR -4 361 1 4308 261 104 61 chr13 27068584 27070375 -74802794 - HAL1 LINE L1 -580 1927 3 955 184 0 0 chr13 27070632 27070784 -74802385 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr13 27070930 27070954 -74802215 + AT_rich Low_complexity Low_complexity 1 24 0 2201 86 0 24 chr13 27072452 27072743 -74800426 - AluY SINE Alu -12 299 16 547 181 16 50 chr13 27073023 27073038 -74800131 + L1P3 LINE L1 5477 5491 -671 4942 57 2 12 chr13 27073038 27073633 -74799536 - L1PA7 LINE L1 0 6154 5566 547 181 16 50 chr13 27073633 27073729 -74799440 + L1PA7 LINE L1 5491 5581 -581 2324 105 0 0 chr13 27073733 27074037 -74799132 + AluY SINE Alu 1 304 -7 283 267 188 0 chr13 27074180 27074281 -74798888 - L2 LINE L2 -12 3301 3182 1530 230 34 27 chr13 27074683 27075092 -74798077 - LTR52 LTR ERVL -9 412 1 225 0 0 0 chr13 27075451 27075476 -74797693 + (T)n Simple_repeat Simple_repeat 1 25 0 223 360 86 14 chr13 27075519 27075658 -74797511 - MER5A DNA MER1_type -6 183 35 355 262 121 13 chr13 27075916 27076065 -74797104 - MIR SINE MIR -50 212 48 1979 79 64 4 chr13 27076082 27076383 -74796786 - AluY SINE Alu 0 317 1 557 354 34 20 chr13 27076704 27076998 -74796171 - L2 LINE L2 -398 2916 2619 1966 215 8 11 chr13 27077063 27077426 -74795743 + MLT1A1 LTR MaLR 4 365 0 35 24 0 0 chr13 27077609 27077651 -74795518 + AT_rich Low_complexity Low_complexity 1 42 0 2115 78 0 84 chr13 27077773 27078093 -74795076 - AluSx SINE Alu -19 293 1 332 250 13 0 chr13 27078363 27078439 -74794730 - MLT1K LTR MaLR -2 586 510 1765 205 68 20 chr13 27079318 27079369 -74793800 - MLT2D LTR ERVL 0 414 367 216 0 0 0 chr13 27079369 27079393 -74793776 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 1765 205 68 20 chr13 27079393 27079736 -74793433 - MLT2D LTR ERVL -47 367 1 1574 174 55 4 chr13 27081519 27081794 -74791375 + AluJo SINE Alu 1 289 -23 533 219 75 147 chr13 27082559 27082933 -74790236 - L1MC4 LINE L1 -2 8040 7694 183 80 0 0 chr13 27082937 27082962 -74790207 + (T)n Simple_repeat Simple_repeat 1 25 0 8418 12 3 0 chr13 27082984 27084506 -74788663 - L1PA2 LINE L1 0 6155 4630 37455 36 29 2 chr13 27087891 27092400 -74780769 - L1PA2 LINE L1 -1514 4632 2 594 295 28 31 chr13 27092411 27092699 -74780470 - L1MC4 LINE L1 -364 7678 7392 1567 235 57 40 chr13 27092758 27093234 -74779935 + MLT1D LTR MaLR 22 505 0 527 230 11 11 chr13 27093807 27093985 -74779184 + CT-rich Low_complexity Low_complexity 3 180 0 233 205 0 0 chr13 27093985 27094024 -74779145 + polypyrimidine Low_complexity Low_complexity 2 40 0 231 167 0 0 chr13 27094141 27094183 -74778986 + CT-rich Low_complexity Low_complexity 1 42 0 317 147 0 29 chr13 27094193 27094261 -74778908 + (TCTCCC)n Simple_repeat Simple_repeat 3 68 0 1587 263 92 0 chr13 27094772 27095205 -74777964 - MER45C DNA AcHobo -480 473 1 235 255 0 0 chr13 27096479 27096530 -74776639 - MER63 DNA MER1_type 0 1060 1010 181 315 130 37 chr13 27096917 27097025 -74776144 - L2 LINE L2 -16 3256 3139 283 303 74 19 chr13 27097124 27097286 -74775883 + L1ME4a LINE L1 5945 6115 -6 1757 152 4 14 chr13 27097363 27097640 -74775529 - MER1B DNA MER1_type -65 274 1 268 321 15 45 chr13 27098861 27098995 -74774174 - L2 LINE L2 0 3272 3143 445 305 142 19 chr13 27101206 27101580 -74771589 - L1ME4a LINE L1 -202 5919 5500 233 238 0 32 chr13 27101630 27101693 -74771476 - MIR SINE MIR -114 148 88 274 242 33 44 chr13 27103395 27103486 -74769683 + MLT2E LTR ERVL 49 138 -490 655 241 38 72 chr13 27103857 27104098 -74769071 + L1ME3A LINE L1 5887 6118 -52 2363 108 3 0 chr13 27104098 27104404 -74768765 - AluSp SINE Alu -6 307 1 655 241 38 72 chr13 27104404 27104453 -74768716 + L1ME3A LINE L1 6118 6167 -3 242 254 4 4 chr13 27104519 27104596 -74768573 - MIR SINE MIR -45 163 86 2311 100 3 13 chr13 27105365 27105675 -74767494 - AluSx SINE Alu -5 307 1 281 355 45 0 chr13 27105779 27105889 -74767280 - L2 LINE L2 0 3272 3158 272 354 12 0 chr13 27107002 27107084 -74766085 + MIR SINE MIR 30 112 -96 185 362 8 31 chr13 27107076 27107203 -74765966 + MER5A DNA MER1_type 38 161 -28 * 6006 93 12 40 chr13 27109392 27110477 -74762692 + L1PA13 LINE L1 5105 6162 -1 4445 146 28 4 chr13 27111535 27112240 -74760929 - MER50 LTR ERV1 -12 722 1 230 325 50 15 chr13 27114772 27114905 -74758264 + MIR SINE MIR 1 144 -118 1729 113 50 108 chr13 27114905 27115261 -74757908 + THE1C LTR MaLR 1 333 -42 2114 143 0 0 chr13 27115261 27115554 -74757615 - AluSx SINE Alu -19 293 1 1729 113 50 108 chr13 27115554 27115595 -74757574 + THE1C LTR MaLR 333 375 0 577 208 130 0 chr13 27115809 27115963 -74757206 - MIR SINE MIR -30 232 59 1289 235 81 47 chr13 27115964 27116411 -74756758 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr13 27116671 27116692 -74756477 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 27116818 27116862 -74756307 + AT_rich Low_complexity Low_complexity 1 44 0 4288 77 266 3 chr13 27117712 27118366 -74754803 + LTR12 LTR ERV1 1 826 0 23 0 0 0 chr13 27118511 27118534 -74754635 + AT_rich Low_complexity Low_complexity 1 23 0 1126 205 117 56 chr13 27119985 27120327 -74752842 + MLT1A1 LTR MaLR 1 363 -2 223 276 48 38 chr13 27120364 27120469 -74752700 + L2 LINE L2 2394 2499 -815 2144 124 0 43 chr13 27120500 27120823 -74752346 - AluSx SINE Alu -3 309 1 266 257 43 107 chr13 27122092 27122275 -74750894 - MER5A DNA MER1_type 0 189 7 1226 300 72 9 chr13 27122944 27123457 -74749712 - MLT1G1 LTR MaLR -7 588 3 53 49 0 0 chr13 27126778 27126859 -74746310 + AT_rich Low_complexity Low_complexity 1 81 0 1596 203 15 30 chr13 27126961 27127360 -74745809 - MER69 DNA AcHobo 0 2526 2134 1597 259 100 34 chr13 27127361 27127949 -74745220 - MER69 DNA AcHobo -1899 627 1 195 353 60 26 chr13 27128072 27128338 -74744831 - L2 LINE L2 -1217 2097 1823 398 255 186 49 chr13 27128848 27129111 -74744058 - L1ME4a LINE L1 -261 5860 5562 2199 117 0 3 chr13 27129580 27129880 -74743289 - AluSq SINE Alu -13 300 2 197 373 36 0 chr13 27129999 27130109 -74743060 - L2 LINE L2 -245 3027 2914 320 260 41 18 chr13 27130611 27130761 -74742408 + MIR3 SINE MIR 30 181 -27 1720 134 76 44 chr13 27131538 27131839 -74741330 + AluJo SINE Alu 1 310 0 215 356 0 0 chr13 27132001 27132074 -74741095 - MIR SINE MIR -79 129 57 * 225 219 0 31 chr13 27132060 27132124 -74741045 + L2 LINE L2 3250 3311 -2 353 336 39 0 chr13 27132463 27132591 -74740578 + LTR67 LTR ERVL 110 242 -315 278 301 156 23 chr13 27132960 27133133 -74740036 + L2 LINE L2 3118 3313 0 188 255 121 64 chr13 27133868 27134009 -74739160 - L2 LINE L2 -175 3097 2949 180 316 0 0 chr13 27134200 27134257 -74738912 + L2 LINE L2 2907 2963 -309 522 269 0 44 chr13 27134345 27134505 -74738664 + L2 LINE L2 3161 3313 0 435 253 129 39 chr13 27134652 27134830 -74738339 - L2 LINE L2 -18 3295 3102 232 209 42 49 chr13 27135487 27135593 -74737576 - MIR SINE MIR -73 135 42 553 246 67 58 chr13 27135597 27135821 -74737348 - L1MC5 LINE L1 -30 7931 7706 233 283 0 0 chr13 27135902 27135962 -74737207 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 290 164 18 0 chr13 27136025 27136080 -74737089 + AluS SINE Alu 2 57 -245 531 333 44 27 chr13 27136225 27136450 -74736719 - MER115 DNA AcHobo -375 318 90 731 228 109 50 chr13 27136579 27136607 -74736562 + MLT1E3 LTR MaLR 4 29 -595 1574 213 133 42 chr13 27136607 27137040 -74736129 + MLT2B1 LTR ERVL 3 484 -36 414 0 0 0 chr13 27137040 27137086 -74736083 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1574 213 133 42 chr13 27137086 27137127 -74736042 + MLT2B1 LTR ERVL 484 520 0 731 228 109 50 chr13 27137127 27137454 -74735715 + MLT1E3 LTR MaLR 29 387 -237 503 132 0 0 chr13 27137570 27137646 -74735523 - AluS SINE Alu -235 77 2 217 273 45 34 chr13 27138891 27138979 -74734190 - MIR3 SINE MIR -2 206 118 240 291 97 10 chr13 27139280 27139383 -74733786 + MIR3 SINE MIR 85 196 -12 473 92 0 0 chr13 27140270 27140335 -74732834 + Alu SINE Alu 227 291 -19 667 251 96 17 chr13 27140355 27140594 -74732575 + MER112 DNA MER1_type 2 259 -1 221 312 0 64 chr13 27141019 27141128 -74732041 + MIR SINE MIR 87 188 -74 399 301 18 24 chr13 27141251 27141417 -74731752 - MIR SINE MIR -16 246 82 7501 42 5 0 chr13 27141525 27143084 -74730085 + L1PA6 LINE L1 4585 6149 -5 198 167 0 0 chr13 27143099 27143135 -74730034 + A-rich Low_complexity Low_complexity 1 36 0 244 266 133 16 chr13 27143136 27143264 -74729905 + L1MC5 LINE L1 7743 7885 -76 973 198 62 41 chr13 27143273 27143516 -74729653 + L1MC/D LINE L1 5387 5634 -2174 218 223 146 29 chr13 27143760 27143863 -74729306 - MIR3 SINE MIR -27 181 67 806 180 0 0 chr13 27144274 27144402 -74728767 + FLAM_C SINE Alu 1 128 -5 2197 120 7 10 chr13 27145534 27145842 -74727327 + AluSx SINE Alu 2 308 -4 622 197 116 34 chr13 27145842 27146075 -74727094 + L1M4 LINE L1 3091 3342 -2804 2771 221 68 41 chr13 27146097 27146786 -74726383 + MER21B LTR ERV1 20 732 -131 192 77 0 0 chr13 27146786 27146812 -74726357 + (AATTG)n Simple_repeat Simple_repeat 1 26 0 2771 221 68 41 chr13 27146812 27146876 -74726293 + MER21B LTR ERV1 732 793 -70 1459 228 32 39 chr13 27146906 27147341 -74725828 + L1M4 LINE L1 3340 3771 -2375 2241 107 3 19 chr13 27147501 27147810 -74725359 + AluSx SINE Alu 5 308 -4 464 200 0 27 chr13 27147944 27148054 -74725115 + L1MC5 LINE L1 7808 7914 -47 2577 239 83 29 chr13 27148116 27149718 -74723451 + L1M4 LINE L1 48 1821 -4825 229 274 43 60 chr13 27150386 27150503 -74722666 - MIR SINE MIR 0 262 148 2223 110 0 0 chr13 27150972 27151271 -74721898 - AluSq SINE Alu -14 299 1 425 222 21 65 chr13 27151321 27151526 -74721643 - MLT1H LTR MaLR -53 496 241 1683 168 3 0 chr13 27151832 27152117 -74721052 + AluJb SINE Alu 5 290 -22 258 296 0 0 chr13 27152866 27152920 -74720249 + MIR SINE MIR 94 147 -115 196 237 51 34 chr13 27152926 27152985 -74720184 - L2 LINE L2 0 3272 3213 1215 102 6 6 chr13 27153476 27153652 -74719517 + L1P5 LINE L1 5570 5745 -409 426 70 23 105 chr13 27153752 27153838 -74719331 + L1MB5 LINE L1 6090 6168 -6 240 277 53 11 chr13 27153852 27153946 -74719223 - MLT1J LTR MaLR -310 201 104 219 209 99 55 chr13 27154153 27154244 -74718925 + MIR3 SINE MIR 89 183 -25 2702 191 111 44 chr13 27154930 27155630 -74717539 - MER21B LTR ERV1 -57 806 60 2649 184 86 12 chr13 27155736 27156465 -74716704 + L1MB3 LINE L1 4782 5593 -590 1509 134 14 28 chr13 27156469 27156752 -74716417 + L1MB3 LINE L1 5904 6182 -1 818 280 36 18 chr13 27156784 27157170 -74715999 + L1M4 LINE L1 2265 2657 -3989 797 286 97 19 chr13 27157580 27157951 -74715218 + LTR16C LTR ERVL 92 491 0 475 318 179 14 chr13 27158126 27158478 -74714691 - L2 LINE L2 -765 2549 2140 508 254 164 0 chr13 27158737 27158902 -74714267 + MIR SINE MIR 14 205 -57 2303 91 3 0 chr13 27158975 27159282 -74713887 + AluSp SINE Alu 1 308 -5 911 176 74 0 chr13 27159959 27160135 -74713034 - MER5A DNA MER1_type 0 189 1 684 251 25 6 chr13 27160562 27160725 -74712444 - Charlie8 DNA MER1_type -2241 176 11 215 196 36 0 chr13 27160735 27160791 -74712378 - L2 LINE L2 -541 2773 2716 642 225 33 33 chr13 27161215 27161366 -74711803 - MLT1G LTR MaLR 0 590 440 216 135 216 27 chr13 27161499 27161573 -74711596 + MIR SINE MIR 33 120 -88 1951 129 7 7 chr13 27162093 27162387 -74710782 - AluSx SINE Alu -18 294 1 601 216 32 16 chr13 27162387 27162563 -74710606 - L1MEc LINE L1 -4310 2086 1905 2459 281 35 29 chr13 27162583 27163353 -74709816 - HERV16 LTR ERVL -3667 1329 555 648 165 0 19 chr13 27163438 27163541 -74709628 - FRAM SINE Alu -16 160 60 462 274 68 7 chr13 27163908 27164054 -74709115 + MER117 DNA MER1_type 6 160 -37 196 270 243 0 chr13 27164252 27164326 -74708843 - MIR3 SINE MIR -54 154 63 1789 159 0 3 chr13 27164900 27165201 -74707968 - AluJb SINE Alu -12 300 1 372 301 9 0 chr13 27165270 27165383 -74707786 - MIR SINE MIR -70 192 79 385 333 18 0 chr13 27166601 27166715 -74706454 + MIR3 SINE MIR 86 201 -7 696 97 11 0 chr13 27166876 27166969 -74706200 - AluSq/x SINE Alu -204 108 15 505 317 112 18 chr13 27167525 27167749 -74705420 + MIR SINE MIR 9 253 -9 207 180 45 112 chr13 27167784 27167873 -74705296 + MIR SINE MIR 69 151 -57 1780 144 7 7 chr13 27168561 27168853 -74704316 + AluSx SINE Alu 1 292 -20 393 211 35 35 chr13 27169018 27169132 -74704037 - MER112 DNA MER1_type 0 260 147 2155 59 0 24 chr13 27169182 27169493 -74703676 + AluY SINE Alu 1 304 0 311 270 53 112 chr13 27170124 27170276 -74702893 - MIR SINE MIR -65 143 1 1080 123 57 75 chr13 27170856 27171084 -74702085 - AluJo SINE Alu 0 312 89 794 220 109 43 chr13 27171184 27171246 -74701923 - L1MEc LINE L1 -2987 3228 3172 2117 111 3 0 chr13 27171246 27171553 -74701616 - AluSp SINE Alu -5 308 1 794 220 109 43 chr13 27171553 27171886 -74701283 - L1MEc LINE L1 -3043 3172 2807 * 1232 235 40 9 chr13 27171879 27172300 -74700869 - L1MEc LINE L1 -3873 2523 2090 2058 136 0 3 chr13 27172303 27172611 -74700558 - AluSx SINE Alu -5 307 1 287 288 0 0 chr13 27173479 27173545 -74699624 - MIR SINE MIR -13 249 184 316 329 169 30 chr13 27173743 27173980 -74699189 - L3 LINE CR1 -29 1548 1279 560 319 32 0 chr13 27174474 27174631 -74698538 + L2 LINE L2 3111 3272 0 197 118 59 0 chr13 27174916 27174950 -74698219 + MIR SINE MIR 109 144 -64 200 326 38 53 chr13 27175269 27175401 -74697768 - L3 LINE CR1 -32 1545 1416 607 321 80 13 chr13 27175713 27175950 -74697219 + MIR SINE MIR 9 261 -1 303 293 154 8 chr13 27176008 27176131 -74697038 + MIR SINE MIR 58 198 -64 311 296 10 0 chr13 27176139 27176237 -74696932 + MER94 DNA DNA 1 99 -35 1760 64 0 0 chr13 27176308 27176527 -74696642 - AluY SINE Alu -9 302 84 1467 177 7 40 chr13 27176596 27176895 -74696274 + AluJo SINE Alu 19 307 -5 216 198 359 38 chr13 27177237 27177343 -74695826 - MIR SINE MIR -107 155 16 263 307 193 9 chr13 27177848 27177962 -74695207 + MIR SINE MIR 96 230 -32 22 0 0 0 chr13 27177981 27178003 -74695166 + AT_rich Low_complexity Low_complexity 1 22 0 1907 112 24 10 chr13 27178007 27178301 -74694868 + AluSx SINE Alu 1 298 -14 456 337 87 0 chr13 27178428 27178600 -74694569 + MIR3 SINE MIR 2 143 -65 2165 104 0 3 chr13 27179129 27179426 -74693743 - AluSq SINE Alu -15 298 3 261 242 17 92 chr13 27179478 27179598 -74693571 + L2 LINE L2 3151 3261 -52 767 180 16 0 chr13 27179625 27179753 -74693416 + AluJo SINE Alu 2 131 -181 1950 137 0 0 chr13 27179945 27180304 -74692865 - AluSx SINE Alu 0 359 1 691 305 32 28 chr13 27180365 27180614 -74692555 + MIR SINE MIR 7 256 -6 1999 123 7 13 chr13 27181416 27181717 -74691452 + AluSx SINE Alu 1 299 -13 898 188 0 0 chr13 27181717 27181877 -74691292 + AluJo SINE Alu 134 293 -19 184 248 67 86 chr13 27182801 27182906 -74690263 + MIR SINE MIR 30 132 -76 3592 271 69 63 chr13 27183065 27183337 -74689832 - HAL1 LINE L1 -429 2078 1809 1694 177 18 81 chr13 27183337 27183722 -74689447 - MLT1A1 LTR MaLR -4 361 1 3592 271 69 63 chr13 27183722 27185513 -74687656 - HAL1 LINE L1 -698 1809 3 904 184 0 0 chr13 27185770 27185922 -74687247 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr13 27186068 27186092 -74687077 + AT_rich Low_complexity Low_complexity 1 24 0 2094 86 0 24 chr13 27187590 27187881 -74685288 - AluY SINE Alu -12 299 16 547 181 16 50 chr13 27188161 27188176 -74684993 + L1P3 LINE L1 5477 5491 -671 4702 57 2 12 chr13 27188176 27188771 -74684398 - L1PA7 LINE L1 0 6154 5566 547 181 16 50 chr13 27188771 27188867 -74684302 + L1PA7 LINE L1 5491 5581 -581 2124 112 0 0 chr13 27188871 27189166 -74684003 + AluY SINE Alu 1 295 -16 944 260 22 5 chr13 27189495 27189718 -74683451 - MIR SINE MIR 0 262 36 437 224 28 56 chr13 27189718 27189861 -74683308 - L1MC/D LINE L1 -2012 5796 5658 1986 123 13 25 chr13 27189900 27190216 -74682953 + AluSx SINE Alu 1 312 0 231 336 44 9 chr13 27190587 27190700 -74682469 + MIR3 SINE MIR 38 154 -54 433 355 15 30 chr13 27190749 27190952 -74682217 + L2 LINE L2 2848 3047 -266 1007 226 51 117 chr13 27194647 27195217 -74677952 + L2 LINE L2 2787 3313 0 2903 205 62 10 chr13 27196700 27197314 -74675855 - MER82 DNA MER2_type -7 646 1 199 201 191 92 chr13 27197365 27197488 -74675681 - MIR SINE MIR -66 142 16 415 314 39 13 chr13 27197777 27197930 -74675239 + MIR3 SINE MIR 9 165 -43 21 36 0 0 chr13 27198580 27198608 -74674561 + AT_rich Low_complexity Low_complexity 1 28 0 408 291 148 22 chr13 27199909 27200132 -74673037 + MIR SINE MIR 10 260 -2 1081 179 7 80 chr13 27200270 27200404 -74672765 + MLT1D LTR MaLR 250 317 -150 861 132 0 22 chr13 27200404 27200540 -74672629 - FLAM_C SINE Alu 0 133 1 1081 179 7 80 chr13 27200540 27200681 -74672488 + MLT1D LTR MaLR 317 467 0 267 246 8 67 chr13 27200805 27200939 -74672230 + GA-rich Low_complexity Low_complexity 5 130 0 961 248 86 72 chr13 27201174 27201719 -74671450 + HAL1 LINE L1 1238 1790 -717 1146 216 46 0 chr13 27201778 27201996 -74671173 + AluJb SINE Alu 85 312 0 287 164 16 0 chr13 27201996 27202057 -74671112 + GA-rich Low_complexity Low_complexity 4 65 0 783 243 112 36 chr13 27202063 27202501 -74670668 + HAL1 LINE L1 1869 2349 -158 2188 91 10 7 chr13 27202501 27202799 -74670370 + AluSq SINE Alu 1 299 -14 783 243 112 36 chr13 27202799 27202853 -74670316 + HAL1 LINE L1 2349 2398 -109 338 0 0 23 chr13 27202881 27202924 -74670245 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7917 8 0 0 chr13 27202924 27203963 -74669206 - L1PA3 LINE L1 -10 6145 5108 7064 32 0 0 chr13 27203963 27204844 -74668325 + L1PA3 LINE L1 4229 5109 -1037 319 311 96 7 chr13 27205002 27205137 -74668032 - MIR SINE MIR -81 181 35 510 295 31 16 chr13 27207398 27207591 -74665578 + MIR SINE MIR 39 234 -28 271 340 17 8 chr13 27207834 27208044 -74665125 - L1M3 LINE L1 -345 5826 5617 1821 100 52 8 chr13 27209747 27209997 -74663172 - AluSc SINE Alu -5 304 44 213 333 0 0 chr13 27212397 27212457 -74660712 + CT-rich Low_complexity Low_complexity 1 60 0 755 219 38 0 chr13 27215779 27215939 -74657230 + MER5A DNA MER1_type 5 170 -19 648 309 88 5 chr13 27219089 27219306 -74653863 - MIR SINE MIR -6 256 22 327 325 81 16 chr13 27219916 27220039 -74653130 + MIR SINE MIR 1 131 -131 563 179 50 1 chr13 27220310 27220443 -74652726 + MLT1B LTR MaLR 1 125 -265 1171 181 15 31 chr13 27220532 27220792 -74652377 + MLT1B LTR MaLR 135 390 0 202 167 33 17 chr13 27220842 27220902 -74652267 + T-rich Low_complexity Low_complexity 5 65 0 24 0 0 0 chr13 27220906 27220930 -74652239 + AT_rich Low_complexity Low_complexity 1 24 0 511 241 43 32 chr13 27222153 27222340 -74650829 - MLT1C LTR MaLR -3 464 276 1929 141 0 23 chr13 27222388 27222692 -74650477 - AluSx SINE Alu -15 297 1 238 269 26 13 chr13 27223119 27223197 -74649972 + L2 LINE L2 2992 3070 -202 2328 107 0 0 chr13 27224111 27224466 -74648703 - L1P LINE L1 -1263 4883 4529 231 189 139 50 chr13 27224868 27225048 -74648121 - Charlie7 DNA MER1_type -67 2545 2350 667 258 113 56 chr13 27225053 27225355 -74647814 - MLT1H LTR MaLR 0 549 231 1735 137 8 4 chr13 27225383 27225645 -74647524 - AluSc SINE Alu -3 306 44 3759 171 66 34 chr13 27225645 27226525 -74646644 - L1MC2 LINE L1 -14 6330 5423 1684 209 124 26 chr13 27226694 27227421 -74645748 - Charlie7 DNA MER1_type -294 2318 1521 348 254 164 38 chr13 27227421 27227634 -74645535 - Charlie7 DNA MER1_type -2286 326 87 737 206 139 10 chr13 27228292 27228486 -74644683 - MER20 DNA MER1_type 0 219 1 1335 270 24 34 chr13 27228869 27229353 -74643816 + L2 LINE L2 2542 3020 -293 1862 155 21 3 chr13 27229353 27229682 -74643487 + MSTB LTR MaLR 91 425 -1 1326 198 49 34 chr13 27230000 27230324 -74642845 + MLT1A1 LTR MaLR 35 363 -2 1949 160 7 74 chr13 27230516 27230934 -74642235 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr13 27230934 27230958 -74642211 + AT_rich Low_complexity Low_complexity 1 24 0 2011 154 3 7 chr13 27231108 27231413 -74641756 - AluSx SINE Alu -4 308 5 223 327 19 0 chr13 27231545 27231597 -74641572 + L2 LINE L2 3134 3186 -86 297 304 68 68 chr13 27231690 27231940 -74641229 + MLT1J LTR MaLR 101 350 -161 1356 274 68 54 chr13 27231940 27233131 -74640038 - L1MEd LINE L1 -4604 1525 323 383 379 9 23 chr13 27233431 27233650 -74639519 + L1MC4a LINE L1 5708 5923 -1885 259 212 24 71 chr13 27233841 27233926 -74639243 + MIR SINE MIR 182 262 0 2526 69 0 0 chr13 27234038 27234341 -74638828 - AluSp SINE Alu -10 303 1 1846 220 82 76 chr13 27235412 27235581 -74637588 - MER50 LTR ERV1 0 734 567 2151 93 17 0 chr13 27235581 27235872 -74637297 + AluSq SINE Alu 1 296 -17 1846 220 82 76 chr13 27235872 27235885 -74637284 - MER50 LTR ERV1 -167 567 556 284 0 28 0 chr13 27235885 27235921 -74637248 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1846 220 82 76 chr13 27235921 27236460 -74636709 - MER50 LTR ERV1 -178 556 8 222 37 0 0 chr13 27237474 27237501 -74635668 - MIR SINE MIR -64 144 118 238 254 70 0 chr13 27238192 27238273 -74634896 + MIR3 SINE MIR 75 159 -49 2317 101 3 0 chr13 27239006 27239303 -74633866 - AluSg SINE Alu -12 298 1 778 330 83 46 chr13 27239956 27240219 -74632950 + L2 LINE L2 2329 2581 -691 2154 141 82 25 chr13 27240219 27240624 -74632545 - MSTA LTR MaLR 0 428 1 778 330 83 46 chr13 27240624 27241063 -74632106 + L2 LINE L2 2581 3064 -208 317 242 0 11 chr13 27241383 27241478 -74631691 - L1ME LINE L1 -3775 2305 2212 228 347 8 0 chr13 27241757 27241881 -74631288 - L1ME LINE L1 -4579 1682 1558 436 268 42 38 chr13 27241912 27242125 -74631044 + L1MC5 LINE L1 7321 7534 -427 431 283 73 26 chr13 27242505 27242696 -74630473 - L1ME LINE L1 -4814 1268 1069 302 278 38 22 chr13 27242760 27242996 -74630173 - L1ME LINE L1 -5040 1043 807 368 319 128 14 chr13 27243787 27243928 -74629241 + L2 LINE L2 3116 3272 0 485 244 37 7 chr13 27243930 27244065 -74629104 - MIR SINE MIR -38 224 86 25 31 0 0 chr13 27244412 27244444 -74628725 + AT_rich Low_complexity Low_complexity 1 32 0 632 105 21 6 chr13 27244445 27244591 -74628578 - L1MC1 LINE L1 0 6333 6155 258 244 64 0 chr13 27245119 27245197 -74627972 + MIR SINE MIR 93 175 -87 291 54 0 0 chr13 27246167 27246204 -74626965 + (TG)n Simple_repeat Simple_repeat 2 38 0 269 268 177 26 chr13 27246764 27246966 -74626203 - MIR3 SINE MIR -4 258 35 208 368 110 13 chr13 27247378 27247606 -74625563 + L2 LINE L2 2926 3175 -97 289 268 147 45 chr13 27248590 27248738 -74624431 + MIR SINE MIR 23 189 -73 478 234 117 7 chr13 27248738 27248892 -74624277 + MER5B DNA MER1_type 4 174 -4 203 140 18 105 chr13 27250317 27250374 -74622795 + L2 LINE L2 3175 3226 -87 501 291 34 17 chr13 27250723 27250894 -74622275 - MIR SINE MIR -65 143 5 572 246 40 75 chr13 27251798 27251882 -74621287 - MIR SINE MIR -70 192 107 186 43 0 0 chr13 27251882 27251905 -74621264 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 572 246 40 75 chr13 27251905 27252019 -74621150 - MIR SINE MIR -155 107 1 1056 146 0 0 chr13 27253777 27253955 -74619214 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 504 294 29 69 chr13 27253965 27254241 -74618928 + MLT1K LTR MaLR 319 583 -5 291 307 105 18 chr13 27254656 27254770 -74618399 - L2 LINE L2 -16 3256 3133 475 315 30 0 chr13 27255050 27255215 -74617954 + L2 LINE L2 3133 3302 -11 621 315 97 59 chr13 27255227 27255700 -74617469 - L3 LINE CR1 -407 1170 680 343 308 304 9 chr13 27255789 27256111 -74617058 - L3 LINE CR1 -880 697 281 185 0 0 39 chr13 27257475 27257501 -74615668 + (TAA)n Simple_repeat Simple_repeat 2 26 0 28 29 0 0 chr13 27257737 27257772 -74615397 + AT_rich Low_complexity Low_complexity 1 35 0 2171 133 0 0 chr13 27258054 27258356 -74614813 + AluSg SINE Alu 2 303 -7 401 316 51 19 chr13 27260331 27260489 -74612680 + MIR3 SINE MIR 3 165 -43 289 287 37 0 chr13 27260995 27261001 -74612168 + (CATATA)n Simple_repeat Simple_repeat 3 7 -107 248 75 0 25 chr13 27261001 27261041 -74612128 + (TATG)n Simple_repeat Simple_repeat 2 40 0 289 287 37 0 chr13 27261041 27261142 -74612027 + (CATATA)n Simple_repeat Simple_repeat 7 114 0 180 77 0 0 chr13 27261841 27261867 -74611302 + (TAGA)n Simple_repeat Simple_repeat 3 28 0 315 0 0 0 chr13 27262131 27262166 -74611003 + (CA)n Simple_repeat Simple_repeat 2 36 0 2842 105 54 13 chr13 27262391 27262838 -74610331 - MER4C LTR ERV1 0 465 1 1019 121 0 0 chr13 27262876 27263017 -74610152 + AluSg/x SINE Alu 163 303 -9 291 325 5 78 chr13 27263115 27263246 -74609923 + MIR SINE MIR 34 146 -116 2257 98 0 14 chr13 27263246 27263542 -74609627 + AluSx SINE Alu 14 305 -7 291 325 5 78 chr13 27263542 27263616 -74609553 + MIR SINE MIR 146 224 -38 1427 207 55 65 chr13 27263869 27264362 -74608807 + L1 LINE L1 2294 2781 -3365 1034 209 4 4 chr13 27264364 27264594 -74608575 + L1 LINE L1 3776 4005 -2141 3819 165 98 31 chr13 27264594 27265516 -74607653 + L1MC3 LINE L1 6803 7785 0 330 291 112 8 chr13 27265945 27266079 -74607090 - MIR SINE MIR -68 194 47 286 339 50 16 chr13 27266881 27267002 -74606167 + L3 LINE CR1 1381 1505 -72 2430 157 16 9 chr13 27267647 27268086 -74605083 - LTR47B LTR ERVL -1 442 1 2267 95 10 0 chr13 27268249 27268543 -74604626 + AluSx SINE Alu 1 297 -15 983 180 14 24 chr13 27268574 27268785 -74604384 + L1MB3 LINE L1 5958 6166 -17 22 35 0 0 chr13 27268790 27268819 -74604350 + AT_rich Low_complexity Low_complexity 1 29 0 199 265 157 20 chr13 27269284 27269386 -74603783 - L3 LINE CR1 -170 1407 1292 1143 315 139 30 chr13 27270195 27271124 -74602045 - L2 LINE L2 -1 3312 2281 555 326 39 72 chr13 27271122 27271512 -74601657 - L2 LINE L2 0 3272 2896 * 2222 134 0 20 chr13 27271736 27272080 -74601089 - MER1B DNA MER1_type 0 337 1 1670 176 30 19 chr13 27273287 27273650 -74599519 + L1MC2 LINE L1 5969 6335 -9 1008 323 132 0 chr13 27273724 27274157 -74599012 - L2 LINE L2 -1089 2225 1736 230 293 84 58 chr13 27274185 27274218 -74598951 - L2 LINE L2 -2228 1086 1055 2537 46 7 3 chr13 27274218 27274522 -74598647 + AluY SINE Alu 1 305 -6 230 293 84 58 chr13 27274522 27274679 -74598490 - L2 LINE L2 -2259 1055 891 385 291 67 22 chr13 27275144 27275278 -74597891 - MIR SINE MIR -78 184 45 24 77 0 0 chr13 27276035 27276087 -74597082 + AT_rich Low_complexity Low_complexity 1 52 0 380 360 48 36 chr13 27276101 27276351 -74596818 + L1ME LINE L1 58 310 -5809 643 298 46 36 chr13 27276872 27277106 -74596063 + L1ME LINE L1 1097 1327 -4983 2266 128 0 0 chr13 27277106 27277418 -74595751 - AluSq SINE Alu -1 312 1 643 298 46 36 chr13 27277418 27277766 -74595403 + L1ME LINE L1 1327 1729 -4581 39 22 0 0 chr13 27277791 27277837 -74595332 + AT_rich Low_complexity Low_complexity 1 46 0 424 349 121 8 chr13 27277849 27278098 -74595071 + L1ME LINE L1 1832 2108 -4202 1941 245 68 56 chr13 27278125 27278555 -74594614 + L1MEc LINE L1 1372 1795 -4420 2368 93 3 0 chr13 27278555 27278865 -74594304 + AluSp SINE Alu 3 313 0 1941 245 68 56 chr13 27278865 27279912 -74593257 + L1MEc LINE L1 1795 2941 -3274 489 336 68 32 chr13 27280363 27280606 -74592563 + L2 LINE L2 2917 3179 -134 1166 201 146 19 chr13 27280606 27280874 -74592295 + AluJo SINE Alu 1 302 0 489 336 68 32 chr13 27280874 27280999 -74592170 + L2 LINE L2 3179 3298 -15 686 270 76 30 chr13 27281026 27281330 -74591839 + L2 LINE L2 2996 3313 0 250 191 0 32 chr13 27281870 27281933 -74591236 + GA-rich Low_complexity Low_complexity 3 63 0 697 190 0 22 chr13 27282314 27282451 -74590718 - MER94 DNA DNA 0 134 1 1162 152 52 44 chr13 27282779 27283029 -74590140 + MER33 DNA MER1_type 1 252 -72 262 280 270 35 chr13 27283666 27283866 -74589303 - L2 LINE L2 -484 2830 2584 336 306 181 14 chr13 27284068 27284284 -74588885 - L1ME4a LINE L1 -268 5853 5602 22 0 0 0 chr13 27284437 27284459 -74588710 + AT_rich Low_complexity Low_complexity 1 22 0 181 301 161 21 chr13 27284470 27284563 -74588606 - L2 LINE L2 -1 3271 3166 21 36 0 0 chr13 27284677 27284705 -74588464 + AT_rich Low_complexity Low_complexity 1 28 0 1361 270 64 33 chr13 27285584 27286332 -74586837 - L2 LINE L2 0 3313 2542 539 171 86 0 chr13 27286470 27286587 -74586582 + MSTB-int LTR MaLR 1520 1646 -5 2177 159 55 15 chr13 27286599 27287001 -74586168 + MSTB LTR MaLR 9 426 0 28 61 0 0 chr13 27287724 27287773 -74585396 + AT_rich Low_complexity Low_complexity 1 49 0 198 91 0 0 chr13 27288234 27288267 -74584902 + (TTA)n Simple_repeat Simple_repeat 3 35 0 6702 68 9 2 chr13 27288267 27289430 -74583739 - L1PA7 LINE L1 -18 6136 4979 180 0 0 0 chr13 27289451 27289471 -74583698 + (C)n Simple_repeat Simple_repeat 1 20 0 2096 29 25 0 chr13 27340044 27340286 -74532883 - L1PA4 LINE L1 -1 6154 5907 6288 148 24 30 chr13 27340543 27340887 -74532282 + L1MA4 LINE L1 4145 4489 -1811 1451 138 5 5 chr13 27340887 27341104 -74532065 - AluSq SINE Alu -96 217 1 6288 148 24 30 chr13 27341104 27342926 -74530243 + L1MA4 LINE L1 4489 6294 -6 1302 195 60 4 chr13 27342953 27343220 -74529949 + L1ME1 LINE L1 5876 6157 -9 2463 136 35 0 chr13 27343585 27343954 -74529215 - MLT1B LTR MaLR 0 390 9 453 351 65 10 chr13 27346141 27346434 -74526735 + L2 LINE L2 2426 2734 -580 268 258 30 0 chr13 27346560 27346626 -74526543 + MLT1J2 LTR MaLR 67 134 -316 269 323 148 37 chr13 27346955 27347252 -74525917 + L2 LINE L2 2918 3247 -25 514 247 340 19 chr13 27347338 27347662 -74525507 + L2 LINE L2 2886 3313 0 239 321 133 64 chr13 27348699 27349060 -74524109 + L3 LINE CR1 547 932 -645 207 153 0 136 chr13 27349085 27349144 -74524025 + L2 LINE L2 2326 2376 -938 2079 136 0 0 chr13 27349290 27349584 -74523585 - AluSx SINE Alu -18 294 1 220 274 109 154 chr13 27349584 27349850 -74523319 - L2 LINE L2 -2 3270 3017 1122 202 10 5 chr13 27349867 27350075 -74523094 - MER3 DNA MER1_type 0 209 1 2098 131 0 13 chr13 27350101 27350414 -74522755 + AluSx SINE Alu 1 309 -3 1049 313 114 39 chr13 27350879 27351807 -74521362 + L2 LINE L2 2089 3091 -181 1166 216 166 38 chr13 27351840 27352262 -74520907 + MLT1D LTR MaLR 22 497 -8 703 232 85 0 chr13 27352924 27353088 -74520081 - MER45A DNA AcHobo 0 178 1 5129 101 0 25 chr13 27353109 27353860 -74519309 + L1PB1 LINE L1 5420 6151 0 786 270 72 41 chr13 27354315 27354634 -74518535 - MER102b DNA MER1_type -9 332 4 496 286 95 5 chr13 27354653 27354863 -74518306 + MIR SINE MIR 34 262 0 256 329 0 0 chr13 27355254 27355324 -74517845 + (CACG)n Simple_repeat Simple_repeat 4 73 0 915 176 6 29 chr13 27357269 27357439 -74515730 - FRAM SINE Alu 0 166 1 296 188 0 118 chr13 27357448 27357533 -74515636 + MIR SINE MIR 110 184 -78 588 181 145 24 chr13 27357914 27358080 -74515089 + MER53 DNA DNA 1 186 -3 2013 207 37 86 chr13 27359061 27359631 -74513538 + MLT1F LTR MaLR 1 542 0 542 245 50 31 chr13 27359669 27359828 -74513341 - MLT1I LTR MaLR -147 262 101 1402 167 25 16 chr13 27360325 27360570 -74512599 + L1MD1 LINE L1 3 249 -6291 1597 230 32 60 chr13 27360582 27361168 -74512001 + L1MD1 LINE L1 236 1038 -5502 1398 219 138 35 chr13 27361186 27361642 -74511527 - MLT1D LTR MaLR -2 503 1 4839 190 55 20 chr13 27361678 27361828 -74511341 + L1MD1 LINE L1 5011 5154 -1482 2278 108 7 0 chr13 27361828 27362124 -74511045 + AluSx SINE Alu 1 298 -14 4839 190 55 20 chr13 27362124 27363537 -74509632 + L1MD1 LINE L1 5154 6636 0 215 30 0 30 chr13 27363638 27363671 -74509498 + (TTA)n Simple_repeat Simple_repeat 3 34 0 494 269 113 72 chr13 27363883 27364299 -74508870 + L1ME LINE L1 5381 5813 -308 429 20 0 0 chr13 27364299 27364349 -74508820 + (CA)n Simple_repeat Simple_repeat 1 50 0 26 64 0 0 chr13 27364433 27364480 -74508689 + AT_rich Low_complexity Low_complexity 1 47 0 4579 37 0 2 chr13 27364480 27365018 -74508151 - L1PA4 LINE L1 -11 6144 5608 243 351 41 23 chr13 27365539 27365710 -74507459 + MIR SINE MIR 49 222 -40 254 304 152 6 chr13 27365745 27365916 -74507253 + MIR SINE MIR 2 197 -65 202 211 0 0 chr13 27365930 27365968 -74507201 - MIR SINE MIR -6 256 219 * 234 200 22 0 chr13 27365935 27365980 -74507189 - L2 LINE L2 -17 3255 3210 1963 157 0 10 chr13 27366110 27366415 -74506754 - AluJb SINE Alu -10 302 1 544 279 111 13 chr13 27367256 27367482 -74505687 + MIR SINE MIR 12 259 -3 332 291 136 31 chr13 27371325 27371495 -74501674 + MIR SINE MIR 6 199 -63 186 340 0 0 chr13 27371532 27371582 -74501587 - L2 LINE L2 -16 3297 3248 271 0 0 77 chr13 27372146 27372185 -74500984 - L1P LINE L1 -830 5342 5307 683 157 0 0 chr13 27372185 27372293 -74500876 - L1PA4 LINE L1 -69 6086 5979 1834 101 4 14 chr13 27372406 27372683 -74500486 - L1PA4 LINE L1 -804 5342 5069 6986 40 0 0 chr13 27372683 27373528 -74499641 + L1PA4 LINE L1 5333 6181 0 269 311 33 13 chr13 27373579 27373730 -74499439 - L2 LINE L2 -1209 2105 1952 298 303 13 40 chr13 27375084 27375236 -74497933 + L2 LINE L2 3165 3312 -1 934 66 29 0 chr13 27375364 27375501 -74497668 + (TTTC)n Simple_repeat Simple_repeat 1 141 0 289 269 77 31 chr13 27378519 27378649 -74494520 - MIR SINE MIR -56 206 71 313 295 107 0 chr13 27379021 27379133 -74494036 - L2 LINE L2 -28 3244 3121 238 208 152 88 chr13 27380915 27381040 -74492129 + L2 LINE L2 3136 3268 -4 189 0 0 0 chr13 27381081 27381102 -74492067 + (A)n Simple_repeat Simple_repeat 1 21 0 182 314 86 29 chr13 27382656 27382831 -74490338 + MIR SINE MIR 77 261 -1 1853 157 0 28 chr13 27382866 27383184 -74489985 + AluJo SINE Alu 1 309 -3 330 26 0 0 chr13 27383819 27383858 -74489311 + (TG)n Simple_repeat Simple_repeat 2 40 0 1134 52 0 8 chr13 27384239 27384373 -74488796 + AluY SINE Alu 1 133 -178 282 248 44 35 chr13 27384428 27384541 -74488628 + MIR SINE MIR 79 192 -70 368 331 110 33 chr13 27384787 27385152 -74488017 - L2 LINE L2 -8 3264 2872 1438 199 58 17 chr13 27385383 27385556 -74487613 - AluJo SINE Alu -4 308 117 366 61 0 0 chr13 27385556 27385605 -74487564 + (TG)n Simple_repeat Simple_repeat 2 50 0 1438 199 58 17 chr13 27385605 27385723 -74487446 - AluJo SINE Alu -195 117 5 2224 138 24 162 chr13 27387869 27388407 -74484762 + LTR32 LTR ERVL 7 470 -1 188 348 22 22 chr13 27388556 27388645 -74484524 - MIR SINE MIR -172 90 2 404 251 78 63 chr13 27388716 27388907 -74484262 + MIR3 SINE MIR 15 208 0 203 294 44 0 chr13 27389191 27389259 -74483910 + MIR SINE MIR 96 166 -96 478 288 169 5 chr13 27390636 27390855 -74482314 + MIR SINE MIR 3 257 -5 517 222 136 25 chr13 27390863 27391061 -74482108 - MIR SINE MIR -6 256 37 242 235 0 74 chr13 27391271 27391352 -74481817 + MLT1L LTR MaLR 1 75 -540 2163 176 13 10 chr13 27391375 27391761 -74481408 - L1MB3 LINE L1 -109 6074 5688 2547 147 71 16 chr13 27391761 27392209 -74480960 + MER44D DNA MER2_type 1 528 -77 2132 172 8 3 chr13 27392297 27392658 -74480511 + MLT1A1 LTR MaLR 1 363 -2 218 301 0 24 chr13 27393430 27393513 -74479656 + GA-rich Low_complexity Low_complexity 2 82 0 359 309 57 11 chr13 27393933 27394108 -74479061 - MIR SINE MIR -59 203 21 249 260 0 13 chr13 27394503 27394580 -74478589 + GA-rich Low_complexity Low_complexity 2 77 0 359 157 1 28 chr13 27395625 27395697 -74477472 + L1MC2 LINE L1 5861 5931 -247 * 6508 156 43 17 chr13 27395688 27396885 -74476284 - L1MCa LINE L1 -5179 1247 20 1177 185 29 8 chr13 27396888 27397126 -74476043 + L1MB8 LINE L1 5914 6156 -22 284 252 0 19 chr13 27397135 27397238 -74475931 + GA-rich Low_complexity Low_complexity 2 102 0 194 229 0 16 chr13 27397267 27397328 -74475841 + G-rich Low_complexity Low_complexity 2 61 0 685 171 92 75 chr13 27397604 27397832 -74475337 + MER106B DNA MER1_type 5 1059 0 195 217 330 28 chr13 27397837 27397943 -74475226 + L2 LINE L2 3124 3261 -11 2366 245 62 34 chr13 27398916 27399984 -74473185 - L1ME3A LINE L1 -28 6142 5052 1139 148 6 0 chr13 27400042 27400225 -74472944 - L1MA9 LINE L1 0 6312 6129 233 297 0 0 chr13 27400227 27400301 -74472868 - L1ME3A LINE L1 -1652 4494 4421 180 340 75 19 chr13 27400515 27400674 -74472495 - L2 LINE L2 -220 3052 2885 244 262 12 48 chr13 27402290 27402374 -74470795 - MLT1K LTR MaLR -318 270 190 317 357 8 0 chr13 27402673 27402802 -74470367 + MIR SINE MIR 2 131 -131 255 61 0 0 chr13 27402804 27402837 -74470332 + (CAT)n Simple_repeat Simple_repeat 3 35 0 263 221 10 125 chr13 27404133 27404237 -74468932 - MIR3 SINE MIR -48 160 69 787 224 29 11 chr13 27404319 27404493 -74468676 - MLT1J2 LTR MaLR -8 442 266 1099 193 28 5 chr13 27404500 27404713 -74468456 + MER20 DNA MER1_type 2 219 0 438 292 245 8 chr13 27405039 27405423 -74467746 + L2 LINE L2 2249 2723 -591 639 278 96 52 chr13 27405718 27406175 -74466994 + L2 LINE L2 2837 3313 0 279 202 0 31 chr13 27406900 27407013 -74466156 + MER69 DNA AcHobo 1 166 -2360 1791 222 53 52 chr13 27407013 27407893 -74465276 + MER69 DNA AcHobo 137 2427 -99 1893 95 0 0 chr13 27408133 27408394 -74464775 - AluY SINE Alu 0 300 40 194 160 260 40 chr13 27411391 27411491 -74461678 + MIR SINE MIR 120 241 -21 350 252 19 29 chr13 27412595 27412698 -74460471 + MIR SINE MIR 100 201 -61 602 265 126 0 chr13 27412945 27413096 -74460073 + MER45A DNA AcHobo 8 177 -1 380 209 11 11 chr13 27415823 27415914 -74457255 - MLT1K LTR MaLR -3 585 495 234 185 62 15 chr13 27416171 27416236 -74456933 - MLT1K LTR MaLR -512 76 9 2318 113 0 0 chr13 27416874 27417184 -74455985 + AluSx SINE Alu 1 310 -2 2024 208 47 16 chr13 27417440 27417930 -74455239 + MLT1D LTR MaLR 1 505 0 2431 153 10 0 chr13 27418014 27418405 -74454764 - MER57A LTR ERV1 -1 402 8 394 271 31 47 chr13 27418422 27418551 -74454618 + MIR3 SINE MIR 66 192 -16 251 219 106 0 chr13 27420737 27420836 -74452333 + MIR3 SINE MIR 78 188 -20 369 0 0 0 chr13 27421995 27422036 -74451133 + (CA)n Simple_repeat Simple_repeat 1 41 0 698 283 21 13 chr13 27422082 27422319 -74450850 + MIR SINE MIR 23 261 -1 305 343 81 6 chr13 27422513 27422685 -74450484 - MIR3 SINE MIR -20 188 4 2173 129 7 0 chr13 27422748 27423058 -74450111 + AluSx SINE Alu 1 312 0 207 0 0 0 chr13 27423518 27423541 -74449628 + (A)n Simple_repeat Simple_repeat 1 23 0 2681 147 22 2 chr13 27423582 27423998 -74449171 + MSTB LTR MaLR 1 424 -2 466 200 46 23 chr13 27424044 27424174 -74448995 + L2 LINE L2 3181 3313 0 204 254 200 9 chr13 27424223 27424333 -74448836 + MIR SINE MIR 92 222 -40 2103 109 31 3 chr13 27424480 27424773 -74448396 + AluSx SINE Alu 1 301 -11 527 250 132 5 chr13 27427838 27428050 -74445119 + MIR SINE MIR 12 250 -12 1659 184 70 28 chr13 27428311 27428670 -74444499 + MLT1A2 LTR MaLR 1 374 0 205 273 0 0 chr13 27429013 27429057 -74444112 + (TATG)n Simple_repeat Simple_repeat 4 47 0 209 330 82 0 chr13 27430796 27430893 -74442276 - L2 LINE L2 0 3313 3209 1972 112 0 0 chr13 27430911 27431200 -74441969 + AluSx SINE Alu 35 323 0 585 185 9 0 chr13 27432305 27432413 -74440756 + FLAM_A SINE Alu 34 142 0 216 67 0 0 chr13 27432900 27432930 -74440239 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 897 140 0 0 chr13 27432932 27433110 -74440059 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 439 267 25 43 chr13 27433345 27433506 -74439663 + L2 LINE L2 2925 3082 -190 183 445 27 7 chr13 27433580 27433726 -74439443 + L2 LINE L2 3124 3272 0 379 71 0 0 chr13 27435536 27435592 -74437577 - L1MB2 LINE L1 -1 6170 6115 1775 168 29 0 chr13 27435593 27435908 -74437261 - L1MB2 LINE L1 -173 6010 5687 255 161 0 0 chr13 27436495 27436551 -74436618 + (CA)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chr13 27437125 27437156 -74436013 + AT_rich Low_complexity Low_complexity 1 31 0 520 227 27 27 chr13 27438429 27438579 -74434590 + L1MC4 LINE L1 7473 7622 -420 * 1434 61 0 6 chr13 27438577 27438758 -74434411 - L1PA7 LINE L1 -142 6012 5833 1258 236 47 33 chr13 27438752 27439176 -74433993 + L1MC4 LINE L1 7613 8042 0 * 3431 50 0 0 chr13 27440171 27440590 -74432579 - L1PA8 LINE L1 0 6172 5754 533 42 0 0 chr13 27440590 27440662 -74432507 + L1P LINE L1 5270 5341 -831 294 259 110 52 chr13 27440703 27441012 -74432157 + L2 LINE L2 2348 2674 -640 1040 123 25 6 chr13 27441077 27441240 -74431929 - L1PA10 LINE L1 -12 6156 5991 360 347 54 77 chr13 27441476 27441825 -74431344 + L2 LINE L2 2923 3263 -9 214 270 56 11 chr13 27442380 27442469 -74430700 + L2 LINE L2 3138 3230 -42 334 323 89 22 chr13 27443510 27443753 -74429416 - MIR SINE MIR 0 262 8 820 250 207 25 chr13 27443794 27444376 -74428793 - LTR50 LTR ERVL -1 794 25 402 310 70 11 chr13 27444478 27444665 -74428504 - MIR SINE MIR -26 236 39 1046 224 80 32 chr13 27444690 27445029 -74428140 - MLT1C LTR MaLR 0 467 113 289 244 39 0 chr13 27445125 27445203 -74427966 - MLT1C LTR MaLR -379 88 8 1125 221 53 8 chr13 27447614 27447877 -74425292 + MLT1C LTR MaLR 193 467 0 2000 191 75 0 chr13 27448527 27448929 -74424240 - MSTB1 LTR MaLR 0 432 1 230 351 0 0 chr13 27448934 27449011 -74424158 + MER103 DNA DNA 36 112 -54 266 176 0 0 chr13 27450413 27450464 -74422705 - L2 LINE L2 0 3313 3263 262 254 15 0 chr13 27450585 27450652 -74422517 - MER91 DNA MER1_type -5 135 68 323 348 49 0 chr13 27450857 27451027 -74422142 - MIR SINE MIR -58 150 20 1099 177 10 19 chr13 27451046 27451255 -74421914 + MER3 DNA MER1_type 3 209 0 404 271 47 100 chr13 27451765 27452086 -74421083 + MER102b DNA MER1_type 35 338 -3 210 259 0 0 chr13 27452371 27452425 -74420744 + MIR SINE MIR 206 259 -3 198 327 59 30 chr13 27452817 27452918 -74420251 + L2 LINE L2 3150 3253 -19 22 0 0 0 chr13 27453081 27453103 -74420066 + AT_rich Low_complexity Low_complexity 1 22 0 294 298 69 55 chr13 27453108 27453397 -74419772 + L1ME LINE L1 5545 5837 -284 1802 174 0 20 chr13 27453503 27453801 -74419368 + AluJo SINE Alu 1 292 -20 1472 199 11 0 chr13 27453803 27454080 -74419089 - L1ME LINE L1 -529 5637 5358 * 1739 210 65 60 chr13 27454078 27454613 -74418556 + L1ME2 LINE L1 5639 6334 0 393 339 110 46 chr13 27454681 27455118 -74418051 + L2 LINE L2 2808 3272 0 342 331 34 29 chr13 27457126 27457301 -74415868 - L2 LINE L2 -173 3099 2924 908 210 0 6 chr13 27457805 27457981 -74415188 + MER5B DNA MER1_type 3 177 -1 1826 192 57 21 chr13 27458246 27458667 -74414502 - MER63B DNA MER1_type 0 436 1 210 224 0 0 chr13 27459773 27459822 -74413347 + (TG)n Simple_repeat Simple_repeat 2 50 0 3067 143 17 37 chr13 27460255 27460785 -74412384 - LTR27 LTR ERV1 -137 810 3 276 291 12 0 chr13 27461128 27461214 -74411955 - L2 LINE L2 -2 3270 3184 928 143 23 0 chr13 27462654 27462829 -74410340 + GA-rich Low_complexity Low_complexity 2 180 0 219 129 0 0 chr13 27462831 27462862 -74410307 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 200 86 86 0 chr13 27463140 27463175 -74409994 - MIR SINE MIR -55 153 116 1185 191 56 88 chr13 27463864 27464240 -74408929 - MLT2D LTR ERVL -48 366 3 466 287 50 36 chr13 27465178 27465496 -74407673 - MLT1I LTR MaLR -14 395 31 222 37 0 0 chr13 27466347 27466374 -74406795 + (A)n Simple_repeat Simple_repeat 1 27 0 974 257 62 54 chr13 27467707 27468155 -74405014 + LTR16A1 LTR ERVL 1 452 -5 409 318 18 12 chr13 27468481 27468651 -74404518 - MARNA DNA Mariner -41 545 375 399 303 107 11 chr13 27468922 27469100 -74404069 - L2 LINE L2 0 3313 3119 593 258 66 16 chr13 27469474 27469656 -74403513 - MIR SINE MIR -44 218 28 2911 119 21 5 chr13 27469706 27470133 -74403036 - MER57B LTR ERV1 0 434 1 690 286 70 39 chr13 27470309 27470666 -74402503 + L1ME4a LINE L1 5527 5894 -227 1897 108 63 4 chr13 27471085 27471353 -74401816 - AluSg SINE Alu -26 284 1 231 184 41 0 chr13 27472047 27472096 -74401073 + GA-rich Low_complexity Low_complexity 2 52 0 1640 221 8 21 chr13 27472342 27472717 -74400452 - MLT1A2 LTR MaLR -4 370 1 522 276 41 31 chr13 27473627 27473823 -74399346 + MLT1L LTR MaLR 418 615 0 643 237 19 0 chr13 27473948 27474104 -74399065 + MIR SINE MIR 33 191 -71 2403 75 14 0 chr13 27474272 27474564 -74398605 + AluSx SINE Alu 1 296 -16 397 230 158 54 chr13 27474749 27475084 -74398085 - L1ME4a LINE L1 -206 5915 5546 758 157 55 180 chr13 27476101 27476356 -74396813 - MER58A DNA MER1_type 0 224 2 337 235 0 78 chr13 27476801 27476903 -74396266 + MIR3 SINE MIR 69 162 -46 2282 169 86 21 chr13 27477228 27477714 -74395455 - MLT2B1 LTR ERVL 0 520 3 21 0 0 0 chr13 27478225 27478246 -74394923 + AT_rich Low_complexity Low_complexity 1 21 0 196 301 27 0 chr13 27478331 27478404 -74394765 + MIR SINE MIR 124 198 -64 396 238 36 0 chr13 27479475 27479559 -74393610 - HERV16 LTR ERVL -4909 87 1 667 292 70 23 chr13 27479581 27479874 -74393295 - LTR16A LTR ERVL -10 440 133 1136 334 76 34 chr13 27480113 27481724 -74391445 - HERV16 LTR ERVL -367 5287 3628 426 39 0 0 chr13 27482242 27482294 -74390875 + (TG)n Simple_repeat Simple_repeat 1 52 0 274 245 43 11 chr13 27482616 27482710 -74390459 - MER5A DNA MER1_type -84 105 9 2568 86 3 0 chr13 27483262 27483613 -74389556 - L1PA8 LINE L1 -1489 4657 4306 7211 63 16 0 chr13 27483615 27485098 -74388071 + L1PA8 LINE L1 4675 6172 0 184 330 39 50 chr13 27485247 27485426 -74387743 - MIR3 SINE MIR -2 206 30 421 257 140 47 chr13 27485977 27485994 -74387175 - MIR SINE MIR -16 246 232 462 230 18 9 chr13 27485994 27486107 -74387062 - MER81 DNA DNA 0 114 1 421 257 140 47 chr13 27486107 27486303 -74386866 - MIR SINE MIR -30 232 13 304 284 0 0 chr13 27486906 27486987 -74386182 - MIR SINE MIR -64 198 118 296 169 36 60 chr13 27488029 27488112 -74385057 - LTR67 LTR ERVL -5 552 472 312 318 9 9 chr13 27488501 27488618 -74384551 + MIR SINE MIR 19 134 -74 1018 150 0 0 chr13 27490600 27490753 -74382416 + FRAM SINE Alu 1 151 -25 209 288 19 19 chr13 27490844 27490934 -74382235 - MER5A DNA MER1_type 0 189 92 2657 48 0 0 chr13 27491589 27491898 -74381271 + AluY SINE Alu 1 309 -2 545 295 54 28 chr13 27492535 27492761 -74380408 + MIR SINE MIR 17 247 -15 409 282 176 25 chr13 27493176 27493659 -74379510 + L2 LINE L2 111 666 -2648 1757 229 35 53 chr13 27493660 27493733 -74379436 + MLT1D LTR MaLR 1 74 -431 2104 145 33 41 chr13 27493733 27494126 -74379043 + MLT1B LTR MaLR 1 390 0 1757 229 35 53 chr13 27494126 27494564 -74378605 + MLT1D LTR MaLR 74 503 -2 478 263 229 45 chr13 27494573 27495128 -74378041 + L2 LINE L2 670 1326 -1988 205 291 94 115 chr13 27495139 27495383 -74377786 + L2 LINE L2 3019 3257 -15 186 103 0 0 chr13 27495383 27495412 -74377757 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 190 290 81 16 chr13 27495672 27495734 -74377435 - L3b LINE CR1 -5 1578 1513 24 32 0 0 chr13 27495802 27495833 -74377336 + AT_rich Low_complexity Low_complexity 1 31 0 338 269 62 88 chr13 27496445 27496605 -74376564 - L2 LINE L2 0 3272 3117 299 241 99 43 chr13 27496825 27496966 -74376203 + MLT1J2 LTR MaLR 302 450 0 325 338 15 0 chr13 27497214 27497347 -74375822 - MER113 DNA MER1_type? -38 483 349 2283 151 88 103 chr13 27497348 27497871 -74375298 + MLT2B2 LTR ERVL 1 515 0 1210 294 38 21 chr13 27497872 27498430 -74374739 + L2 LINE L2 2750 3313 0 348 244 12 0 chr13 27498444 27498526 -74374643 - MER113 DNA MER1_type? -201 320 238 1340 189 55 32 chr13 27498535 27498915 -74374254 - LTR37A LTR ERV1 0 426 38 347 230 35 9 chr13 27498972 27499085 -74374084 - MER113 DNA MER1_type? -286 235 120 349 302 154 0 chr13 27499145 27499294 -74373875 - MER5A DNA MER1_type -9 180 9 206 232 71 0 chr13 27499388 27499444 -74373725 - L2 LINE L2 -567 2747 2688 814 282 70 4 chr13 27500128 27500321 -74372848 - L1ME1 LINE L1 -5 6161 5943 2256 104 14 0 chr13 27500321 27500618 -74372551 - AluSg SINE Alu -9 301 1 814 282 70 4 chr13 27500618 27500697 -74372472 - L1ME1 LINE L1 -223 5943 5871 183 315 27 0 chr13 27500960 27501033 -74372136 - MIR SINE MIR -67 195 121 248 244 13 39 chr13 27502202 27502280 -74370889 - MIR SINE MIR -150 112 37 570 265 24 6 chr13 27503297 27503467 -74369702 - MIR SINE MIR -7 255 83 21 0 0 0 chr13 27503577 27503598 -74369571 + AT_rich Low_complexity Low_complexity 1 21 0 1043 274 56 11 chr13 27503598 27503955 -74369214 - L2 LINE L2 -8 3305 2933 356 330 182 14 chr13 27504409 27504618 -74368551 + HAL1 LINE L1 2 245 -2262 2009 98 9 90 chr13 27504722 27505244 -74367925 - LTR12 LTR ERV1 -98 624 1 577 254 161 38 chr13 27505283 27505680 -74367489 + HAL1 LINE L1 910 1355 -1152 189 0 0 0 chr13 27506295 27506316 -74366853 + (A)n Simple_repeat Simple_repeat 1 21 0 250 239 85 90 chr13 27506401 27506589 -74366580 + Tigger1 DNA MER2_type 815 1001 -1417 7507 156 109 62 chr13 27507078 27508754 -74364415 + MER52A LTR ERV1 1 1755 0 253 313 124 51 chr13 27509746 27509963 -74363206 - MIR SINE MIR -10 252 20 189 189 27 0 chr13 27509974 27510011 -74363158 - L2 LINE L2 -15 3298 3261 1627 169 45 13 chr13 27512537 27512845 -74360324 + MLT1F LTR MaLR 223 540 -2 487 234 139 19 chr13 27514100 27514258 -74358911 - MER5B DNA MER1_type 0 178 2 2267 104 0 0 chr13 27514379 27514695 -74358474 + AluSq SINE Alu 1 316 0 192 172 86 52 chr13 27515116 27515174 -74357995 - MER5A DNA MER1_type -5 184 125 1933 171 0 3 chr13 27515175 27515479 -74357690 + AluJb SINE Alu 1 303 -9 208 340 0 0 chr13 27515483 27515536 -74357633 + MER5A DNA MER1_type 65 117 -72 2268 108 3 0 chr13 27515569 27515876 -74357293 + AluSx SINE Alu 1 308 -4 3155 137 19 9 chr13 27515886 27516679 -74356490 + L1PB3 LINE L1 4943 5743 -411 237 65 0 0 chr13 27516680 27516711 -74356458 + (CA)n Simple_repeat Simple_repeat 2 32 0 2317 115 6 3 chr13 27516726 27517064 -74356105 + L1PB3 LINE L1 5807 6145 -9 407 217 373 6 chr13 27517084 27517245 -74355924 - MIR SINE MIR -8 254 35 22 70 0 0 chr13 27519908 27519951 -74353218 + AT_rich Low_complexity Low_complexity 1 43 0 1578 150 113 13 chr13 27520469 27520899 -74352270 + MER44D DNA MER2_type 1 569 -36 206 130 65 43 chr13 27521237 27521283 -74351886 - L2 LINE L2 0 3272 3226 1112 174 57 28 chr13 27521317 27521529 -74351640 + AluJb SINE Alu 20 237 -75 979 158 45 50 chr13 27521637 27521839 -74351330 - THE1B LTR MaLR 0 364 164 36 23 0 0 chr13 27521885 27521928 -74351241 + AT_rich Low_complexity Low_complexity 1 43 0 1963 127 0 0 chr13 27521977 27522253 -74350916 + AluJb SINE Alu 1 276 -36 194 0 39 0 chr13 27522263 27522289 -74350880 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr13 27522370 27522391 -74350778 + (TG)n Simple_repeat Simple_repeat 2 22 0 459 258 37 18 chr13 27523400 27523563 -74349606 + GA-rich Low_complexity Low_complexity 3 168 0 345 240 181 76 chr13 27524051 27524602 -74348567 + L1M4 LINE L1 2931 3539 -2607 2052 146 0 3 chr13 27525059 27525360 -74347809 - AluSx SINE Alu -12 300 1 2412 92 0 6 chr13 27525604 27525918 -74347251 - AluSx SINE Alu 0 312 1 429 268 140 37 chr13 27526166 27526981 -74346188 - L1M4 LINE L1 -3118 3028 2130 273 322 92 30 chr13 27528063 27528256 -74344913 - MIR SINE MIR -8 254 41 2299 52 16 39 chr13 27529444 27529752 -74343417 - AluY SINE Alu -10 301 1 350 321 33 10 chr13 27530108 27530285 -74342884 + MIR SINE MIR 5 261 -1 362 259 111 58 chr13 27530465 27530574 -74342595 + MIR SINE MIR 15 117 -145 1978 126 0 14 chr13 27530574 27530879 -74342290 - AluSx SINE Alu 0 301 1 362 259 111 58 chr13 27530879 27531000 -74342169 + MIR SINE MIR 117 259 -3 21 57 0 0 chr13 27531050 27531085 -74342084 + AT_rich Low_complexity Low_complexity 1 35 0 226 258 32 16 chr13 27531508 27531570 -74341599 + L2 LINE L2 3209 3271 -1 379 293 31 63 chr13 27531826 27532144 -74341025 + L2 LINE L2 1853 2160 -1154 1377 81 99 14 chr13 27533691 27533902 -74339267 + MER30 DNA MER1_type 2 230 0 348 152 0 0 chr13 27534171 27534237 -74338932 + (CA)n Simple_repeat Simple_repeat 2 67 0 563 267 80 37 chr13 27534626 27534813 -74338356 + MIR SINE MIR 20 214 -48 180 68 45 23 chr13 27535043 27535087 -74338082 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2392 76 0 3 chr13 27535191 27535493 -74337676 + AluSg SINE Alu 1 301 -9 203 341 67 61 chr13 27535513 27535677 -74337492 - L2 LINE L2 -195 3077 2913 22 0 0 0 chr13 27535677 27535699 -74337470 + AT_rich Low_complexity Low_complexity 1 22 0 1118 253 201 33 chr13 27535861 27535973 -74337196 + L1ME3A LINE L1 4006 4098 -2048 1187 192 67 35 chr13 27535973 27536286 -74336883 + MER33 DNA MER1_type 1 323 -1 1118 253 201 33 chr13 27536286 27537306 -74335863 + L1ME3A LINE L1 4098 5329 -817 828 167 0 0 chr13 27537306 27537432 -74335737 + FLAM_C SINE Alu 1 126 -17 1132 210 35 51 chr13 27537442 27537813 -74335356 + L1ME3A LINE L1 5298 5662 -508 1033 273 90 12 chr13 27537819 27538229 -74334940 + L1ME3A LINE L1 5716 6157 -13 365 256 23 87 chr13 27538233 27538378 -74334791 + L1ME3A LINE L1 4981 5134 -1012 2263 84 3 24 chr13 27538378 27538676 -74334493 + AluSp SINE Alu 1 292 -21 365 256 23 87 chr13 27538676 27538698 -74334471 + L1ME3A LINE L1 5134 5156 -990 210 71 0 0 chr13 27538698 27538726 -74334443 + (TA)n Simple_repeat Simple_repeat 2 29 0 365 256 23 87 chr13 27538726 27538776 -74334393 + L1ME3A LINE L1 5156 5185 -961 1159 122 0 6 chr13 27538777 27538941 -74334228 + AluSg/x SINE Alu 132 294 -18 2472 74 0 3 chr13 27539034 27539344 -74333825 + AluY SINE Alu 1 309 -2 698 299 131 24 chr13 27539349 27539871 -74333298 + L1ME3A LINE L1 5257 5859 -311 2086 134 67 3 chr13 27539871 27540215 -74332954 - MER47A DNA MER2_type 0 366 1 698 299 131 24 chr13 27540215 27540320 -74332849 + L1ME3A LINE L1 5859 5951 -219 3886 236 83 59 chr13 27540776 27541711 -74331458 + L1MB5 LINE L1 2 913 -5733 1694 174 0 64 chr13 27541711 27541856 -74331313 + AluJo SINE Alu 1 154 -158 2394 103 0 0 chr13 27541856 27542168 -74331001 + AluSx SINE Alu 1 312 0 1694 174 0 64 chr13 27542168 27542350 -74330819 + AluJo SINE Alu 154 307 -5 3886 236 83 59 chr13 27542350 27543345 -74329824 + L1MB5 LINE L1 913 2158 -4488 3862 174 77 40 chr13 27543427 27544034 -74329135 + L1MB5 LINE L1 5293 5876 -796 1174 147 104 127 chr13 27544034 27544168 -74329001 + AluJo SINE Alu 1 137 -165 2290 86 0 7 chr13 27544168 27544460 -74328709 + AluSq SINE Alu 1 290 -23 1174 147 104 127 chr13 27544460 27544624 -74328545 + AluJo SINE Alu 137 292 -10 3862 174 77 40 chr13 27544624 27545325 -74327844 + L1MB5 LINE L1 5876 6671 -1 389 381 42 32 chr13 27545381 27545788 -74327381 + L2 LINE L2 2456 2866 -448 1118 178 5 5 chr13 27545894 27546091 -74327078 + AluJb SINE Alu 112 308 -4 34 24 0 0 chr13 27547153 27547194 -74325975 + AT_rich Low_complexity Low_complexity 1 41 0 2369 93 0 3 chr13 27547572 27547884 -74325285 + AluSq SINE Alu 1 311 -2 2019 128 0 3 chr13 27548460 27548742 -74324427 - AluJo SINE Alu -20 292 12 669 249 26 5 chr13 27550193 27550382 -74322787 - MER105 DNA DNA -9 195 3 513 180 85 138 chr13 27550388 27550577 -74322592 - MIR SINE MIR -82 180 2 30 27 0 0 chr13 27551639 27551676 -74321493 + AT_rich Low_complexity Low_complexity 1 37 0 1941 131 35 0 chr13 27552100 27552390 -74320779 + AluJb SINE Alu 5 304 -8 714 186 8 0 chr13 27552912 27553036 -74320133 + FLAM_C SINE Alu 1 125 -8 1559 179 39 4 chr13 27553049 27553328 -74319841 + AluJb SINE Alu 5 293 -19 268 333 28 9 chr13 27553504 27553612 -74319557 - L2 LINE L2 -5 3308 3199 701 235 150 15 chr13 27553666 27553866 -74319303 - MIR SINE MIR -33 229 3 2076 104 46 3 chr13 27554089 27554396 -74318773 + L1PA11 LINE L1 5834 6153 -21 807 298 42 39 chr13 27556263 27556619 -74316550 + L2 LINE L2 2604 2960 -354 642 51 0 226 chr13 27557048 27557122 -74316047 + L1MB3 LINE L1 6066 6097 -86 2310 68 0 4 chr13 27557122 27557403 -74315766 + AluSx SINE Alu 1 280 -32 642 51 0 226 chr13 27557403 27557465 -74315704 + L1MB3 LINE L1 6097 6171 -12 589 236 168 82 chr13 27557734 27557868 -74315301 + L1ME4a LINE L1 5469 5590 -531 2146 91 10 36 chr13 27557868 27558175 -74314994 + AluSp SINE Alu 2 300 -13 589 236 168 82 chr13 27558175 27558352 -74314817 + L1ME4a LINE L1 5590 5750 -371 1867 135 11 11 chr13 27558352 27558660 -74314509 - AluSx SINE Alu 0 308 1 589 236 168 82 chr13 27558660 27558761 -74314408 + L1ME4a LINE L1 5750 5920 -201 1838 134 21 14 chr13 27558777 27559068 -74314101 + AluJb SINE Alu 9 301 -11 288 0 0 0 chr13 27559385 27559417 -74313752 + (CA)n Simple_repeat Simple_repeat 2 33 0 426 340 93 50 chr13 27559739 27559923 -74313246 + L2 LINE L2 2149 2324 -948 2584 58 0 0 chr13 27559923 27560234 -74312935 - AluY SINE Alu 0 311 1 426 340 93 50 chr13 27560234 27560423 -74312746 + L2 LINE L2 2324 2503 -769 2335 79 24 0 chr13 27560423 27560713 -74312456 - AluSc SINE Alu -12 297 1 426 340 93 50 chr13 27560713 27561016 -74312153 + L2 LINE L2 2503 3186 -86 272 283 93 66 chr13 27561896 27562274 -74310895 + L1MC4a LINE L1 4885 5272 -874 1788 258 40 32 chr13 27562292 27562343 -74310826 + L1MC4a LINE L1 5331 5380 -2428 2037 155 0 0 chr13 27562343 27562652 -74310517 + AluSx SINE Alu 1 309 -3 1788 258 40 32 chr13 27562652 27563193 -74309976 + L1MC4a LINE L1 5380 5928 -1880 1998 138 14 0 chr13 27563211 27563502 -74309667 - AluSx SINE Alu -17 295 1 243 0 0 0 chr13 27565099 27565126 -74308043 + (CA)n Simple_repeat Simple_repeat 2 28 0 937 143 0 0 chr13 27565328 27565461 -74307708 + AluSq/x SINE Alu 1 133 -180 198 103 0 0 chr13 27565491 27565520 -74307649 + (TA)n Simple_repeat Simple_repeat 2 30 0 261 111 0 0 chr13 27565522 27565567 -74307602 + LTR66 LTR ERVL 394 438 -172 288 170 0 0 chr13 27565570 27565623 -74307546 + (TA)n Simple_repeat Simple_repeat 2 54 0 1730 150 37 3 chr13 27565623 27565917 -74307252 - AluJb SINE Alu -8 304 1 262 282 76 53 chr13 27566422 27566553 -74306616 + Charlie7 DNA MER1_type 59 192 -2420 811 335 180 38 chr13 27567258 27568451 -74304718 - L2 LINE L2 -405 2909 1547 185 263 0 0 chr13 27568665 27568703 -74304466 + MIR SINE MIR 217 254 -8 * 668 240 106 6 chr13 27568669 27568848 -74304321 - MIR SINE MIR -35 227 31 627 315 152 6 chr13 27569679 27570299 -74302870 - L2 LINE L2 -15 3298 2543 3022 211 94 8 chr13 27570315 27571409 -74301760 + L1MC2 LINE L1 4846 6028 -316 304 330 139 15 chr13 27571412 27571685 -74301484 - L2 LINE L2 -1392 1922 1616 6268 214 99 87 chr13 27572012 27572308 -74300861 + L1MCb LINE L1 19 310 -6254 1998 119 37 7 chr13 27572308 27572602 -74300567 - AluSq SINE Alu -10 303 1 6268 214 99 87 chr13 27572602 27573084 -74300085 + L1MCb LINE L1 310 785 -5779 1738 156 3 10 chr13 27573084 27573372 -74299797 + AluJo SINE Alu 16 301 -11 6268 214 99 87 chr13 27573372 27573583 -74299586 + L1MCb LINE L1 785 992 -5572 1615 183 3 7 chr13 27573583 27573896 -74299273 + AluJb SINE Alu 1 312 0 6268 214 99 87 chr13 27573896 27574353 -74298816 + L1MCb LINE L1 992 1442 -5122 277 191 176 0 chr13 27574353 27574421 -74298748 - Tigger5 DNA MER2_type 0 2323 2244 * 460 140 514 0 chr13 27574418 27574525 -74298644 - Tigger5 DNA MER2_type -2129 194 33 * 6268 214 99 87 chr13 27574421 27577472 -74295697 + L1MCb LINE L1 1442 4682 -1882 1897 109 7 25 chr13 27577579 27577863 -74295306 + AluSx SINE Alu 20 298 -14 2625 35 0 13 chr13 27577866 27578179 -74294990 + AluY SINE Alu 1 309 -2 283 333 0 0 chr13 27578190 27578265 -74294904 - MER91A DNA MER1_type -121 75 1 186 281 0 18 chr13 27578363 27578420 -74294749 - L2 LINE L2 -2583 731 676 1016 228 54 131 chr13 27578420 27579068 -74294101 - MLT1G LTR MaLR 0 590 13 719 152 0 32 chr13 27579169 27579294 -74293875 + L1PB3 LINE L1 6034 6154 0 2387 128 67 78 chr13 27579394 27579687 -74293482 + MSTB2 LTR MaLR 1 289 -168 2209 93 10 3 chr13 27579687 27579977 -74293192 - AluSg SINE Alu -18 292 1 2387 128 67 78 chr13 27579977 27580145 -74293024 + MSTB2 LTR MaLR 289 457 0 1886 281 13 2 chr13 27580228 27580687 -74292482 - LTR16B LTR ERVL 0 464 1 339 259 111 69 chr13 27580771 27581175 -74291994 - MLT1L LTR MaLR 0 615 168 231 163 23 0 chr13 27581260 27581303 -74291866 + MER65B LTR ERV1 1 44 -487 207 0 0 0 chr13 27581303 27581326 -74291843 + (A)n Simple_repeat Simple_repeat 1 23 0 2311 115 0 0 chr13 27581326 27581639 -74291530 + AluSq SINE Alu 1 313 0 837 129 58 0 chr13 27581646 27581785 -74291384 + MER65B LTR ERV1 40 186 -345 293 136 0 0 chr13 27581803 27581847 -74291322 + LTR54 LTR ERV1 399 442 -68 2000 138 14 0 chr13 27581852 27582149 -74291020 - AluSg SINE Alu -9 301 1 1848 175 0 13 chr13 27582149 27582452 -74290717 - AluJo SINE Alu -13 299 1 1391 156 62 0 chr13 27582504 27582760 -74290409 + MER65A LTR ERV1 174 445 0 1758 156 3 27 chr13 27582831 27583126 -74290043 + AluSx SINE Alu 1 288 -24 846 153 0 15 chr13 27583207 27583338 -74289831 - FLAM_C SINE Alu -4 129 1 2015 99 31 20 chr13 27583501 27583794 -74289375 + AluSx SINE Alu 1 296 -16 297 318 112 0 chr13 27584702 27584809 -74288360 + MIR SINE MIR 23 141 -67 436 230 127 70 chr13 27584832 27585163 -74288006 + L1M4 LINE L1 2865 3214 -2932 258 281 45 0 chr13 27585185 27585274 -74287895 + L1M4 LINE L1 3686 3778 -2368 1967 140 0 4 chr13 27585294 27585572 -74287597 + AluJb SINE Alu 9 285 -27 833 133 0 0 chr13 27585630 27585743 -74287426 - FRAM SINE Alu -70 106 1 1234 216 65 129 chr13 27585843 27585957 -74287212 + L1MC4 LINE L1 7411 7531 -511 2284 99 10 0 chr13 27585957 27586251 -74286918 + AluSg SINE Alu 1 297 -13 1234 216 65 129 chr13 27586251 27586457 -74286712 + L1MC4 LINE L1 7531 7749 -293 559 168 14 154 chr13 27586457 27586600 -74286569 + FLAM_C SINE Alu 3 125 -8 1234 216 65 129 chr13 27586600 27586813 -74286356 + L1MC4 LINE L1 7749 7900 -142 264 100 0 0 chr13 27586813 27586853 -74286316 + (TG)n Simple_repeat Simple_repeat 2 41 0 1234 216 65 129 chr13 27586853 27586960 -74286209 + L1MC4 LINE L1 7900 8012 -30 1173 141 40 5 chr13 27587078 27587276 -74285893 + AluSx SINE Alu 1 205 -107 2065 135 3 3 chr13 27587362 27587673 -74285496 + AluSq SINE Alu 1 311 -2 820 201 85 0 chr13 27587889 27588078 -74285091 + L1MB7 LINE L1 5921 6125 -59 1049 214 86 62 chr13 27588083 27588467 -74284702 + LTR1B LTR ERV1 1 393 -433 707 121 0 43 chr13 27589027 27589143 -74284026 - FLAM_A SINE Alu -8 134 24 2151 120 13 0 chr13 27589291 27589599 -74283570 - AluSx SINE Alu 0 312 1 6180 90 46 0 chr13 27591129 27591919 -74281250 + LTR12 LTR ERV1 1 826 0 836 127 0 8 chr13 27591919 27592045 -74281124 + LTR12 LTR ERV1 590 714 0 640 200 193 0 chr13 27592187 27592327 -74280842 - AluSg/x SINE Alu -9 301 135 2145 135 3 0 chr13 27592340 27592651 -74280518 - AluSq SINE Alu -1 312 1 366 203 0 0 chr13 27593105 27593179 -74279990 - MER52A LTR ERV1 0 1755 1682 * 3785 212 56 71 chr13 27593151 27594329 -74278840 - MER52A LTR ERV1 -125 1196 56 206 141 0 94 chr13 27594501 27594565 -74278604 + (TGGGGG)n Simple_repeat Simple_repeat 3 60 0 228 288 15 0 chr13 27594580 27594646 -74278523 - MER52A LTR ERV1 -1688 67 1 1407 137 26 9 chr13 27594793 27595049 -74278120 + AluSx SINE Alu 52 311 0 2437 74 0 0 chr13 27595068 27595377 -74277792 + AluY SINE Alu 2 310 -1 1691 135 52 0 chr13 27595385 27595652 -74277517 + AluJb SINE Alu 1 281 -31 32 0 0 0 chr13 27596594 27596626 -74276543 + AT_rich Low_complexity Low_complexity 1 32 0 195 100 0 0 chr13 27596945 27596975 -74276194 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chr13 27596995 27597017 -74276152 + (A)n Simple_repeat Simple_repeat 1 22 0 1635 171 92 43 chr13 27597275 27597602 -74275567 - MER61A LTR ERV1 0 343 1 216 135 0 0 chr13 27597894 27597931 -74275238 + (CATA)n Simple_repeat Simple_repeat 3 39 0 1878 166 13 3 chr13 27597948 27598255 -74274914 + AluSx SINE Alu 1 310 -2 3409 124 81 48 chr13 27598264 27598854 -74274315 + MER4B LTR ERV1 1 610 0 696 203 0 0 chr13 27598855 27598973 -74274196 - FLAM_C SINE Alu -15 118 1 2171 123 0 0 chr13 27599063 27599355 -74273814 - AluSx SINE Alu -20 292 1 2022 118 0 0 chr13 27599856 27600128 -74273041 + AluSg SINE Alu 32 303 -7 533 213 56 0 chr13 27600128 27600236 -74272933 - MLT1D LTR MaLR -389 116 3 1857 139 0 43 chr13 27601726 27602029 -74271140 - AluJb SINE Alu -22 290 1 25 51 0 0 chr13 27602122 27602161 -74271008 + AT_rich Low_complexity Low_complexity 1 39 0 514 332 78 5 chr13 27602599 27602804 -74270365 + MIR SINE MIR 38 257 -5 24 0 0 0 chr13 27602841 27602865 -74270304 + AT_rich Low_complexity Low_complexity 1 24 0 342 247 134 0 chr13 27603231 27603328 -74269841 + MIR SINE MIR 88 197 -65 2428 84 0 6 chr13 27603903 27604214 -74268955 - AluSp SINE Alu -3 310 2 2738 29 0 0 chr13 27604288 27604595 -74268574 - AluY SINE Alu -4 307 1 1897 115 0 4 chr13 27604600 27604869 -74268300 - AluSx SINE Alu -11 301 34 2242 103 10 0 chr13 27605222 27605523 -74267646 + AluSx SINE Alu 1 304 -8 2401 91 0 0 chr13 27605839 27606147 -74267022 - AluY SINE Alu -3 308 1 216 0 0 0 chr13 27606544 27606568 -74266601 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 321 26 0 0 chr13 27606978 27607016 -74266153 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2394 76 0 7 chr13 27608340 27608641 -74264528 - AluY SINE Alu -12 299 1 262 111 111 0 chr13 27608645 27608690 -74264479 - MSTC LTR MaLR -378 50 1 5690 240 82 67 chr13 27608698 27610396 -74262773 - MSTD-int LTR MaLR -9 1726 2 1798 192 72 47 chr13 27610398 27610743 -74262426 - MSTD LTR MaLR 0 396 38 1885 143 4 0 chr13 27610743 27611054 -74262115 + AluSg SINE Alu 1 312 0 1798 192 72 47 chr13 27611054 27611093 -74262076 - MSTD LTR MaLR -358 38 1 2025 156 3 3 chr13 27611173 27611480 -74261689 + AluJb SINE Alu 1 307 -5 658 125 19 29 chr13 27611482 27611586 -74261583 + U13 snRNA snRNA 1 103 -1 1293 171 89 26 chr13 27611739 27611827 -74261342 - MSTA LTR MaLR -140 288 207 2465 46 20 7 chr13 27611827 27612129 -74261040 - AluY SINE Alu -5 306 1 1293 171 89 26 chr13 27612129 27612309 -74260860 - MSTA LTR MaLR -221 207 3 1031 293 114 13 chr13 27612332 27612728 -74260441 - HAL1 LINE L1 -2069 438 3 1574 168 0 11 chr13 27613127 27613401 -74259768 + AluSx SINE Alu 42 312 0 2584 148 4 60 chr13 27613458 27613937 -74259232 - MLT2C2 LTR ERVL -2 462 11 2599 228 88 139 chr13 27613949 27614796 -74258373 + HAL1 LINE L1 718 1607 -900 832 120 0 93 chr13 27614796 27614946 -74258223 + FLAM_C SINE Alu 8 143 0 2599 228 88 139 chr13 27614946 27615094 -74258075 + HAL1 LINE L1 1607 1761 -746 2344 110 0 3 chr13 27615094 27615403 -74257766 + AluSq SINE Alu 1 308 -5 2599 228 88 139 chr13 27615403 27615646 -74257523 + HAL1 LINE L1 1761 2015 -492 2405 72 23 0 chr13 27615646 27615952 -74257217 + AluSp SINE Alu 1 313 0 2599 228 88 139 chr13 27615952 27616100 -74257069 + HAL1 LINE L1 2015 2169 -338 1843 147 13 33 chr13 27616100 27616400 -74256769 - AluJo SINE Alu -18 294 1 2599 228 88 139 chr13 27616400 27616605 -74256564 + HAL1 LINE L1 2169 2360 -147 2143 129 0 3 chr13 27616605 27616915 -74256254 - AluSx SINE Alu -3 309 1 2599 228 88 139 chr13 27616915 27617056 -74256113 + HAL1 LINE L1 2360 2507 0 217 260 81 116 chr13 27617141 27617314 -74255855 + MIR SINE MIR 75 241 -21 940 160 0 0 chr13 27619249 27619380 -74253789 + FLAM_C SINE Alu 2 132 -1 2447 74 0 7 chr13 27620660 27620958 -74252211 - AluSp SINE Alu -17 296 1 33 80 0 0 chr13 27620962 27621037 -74252132 + AT_rich Low_complexity Low_complexity 1 75 0 2264 121 0 0 chr13 27621105 27621403 -74251766 - AluSx SINE Alu -14 298 1 26 50 0 0 chr13 27621423 27621463 -74251706 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr13 27621900 27621921 -74251248 + AT_rich Low_complexity Low_complexity 1 21 0 2182 114 0 3 chr13 27621981 27622278 -74250891 + AluSx SINE Alu 1 296 -16 429 193 158 9 chr13 27622463 27622577 -74250592 + MLT1L LTR MaLR 142 272 -343 2199 95 3 7 chr13 27622786 27623099 -74250070 - AluSp SINE Alu 0 312 1 1202 155 9 161 chr13 27623243 27623414 -74249755 + AluJo SINE Alu 2 95 -207 1943 164 3 10 chr13 27623414 27623726 -74249443 + AluSx SINE Alu 1 310 -2 1202 155 9 161 chr13 27623726 27623902 -74249267 + AluJo SINE Alu 95 296 -6 2236 121 3 0 chr13 27623934 27624240 -74248929 + AluSq SINE Alu 1 307 -6 2210 113 7 3 chr13 27624450 27624752 -74248417 + AluSx SINE Alu 1 303 -9 1730 173 0 33 chr13 27624829 27625135 -74248034 - AluJo SINE Alu -16 296 1 2089 125 4 0 chr13 27625239 27625519 -74247650 + AluSg SINE Alu 1 281 -29 2419 84 0 10 chr13 27626082 27626391 -74246778 - AluSp SINE Alu -7 306 1 1277 242 104 103 chr13 27626418 27626712 -74246457 - L1MEc LINE L1 -3987 2409 2117 626 268 0 0 chr13 27626712 27626839 -74246330 + FLAM_A SINE Alu 1 127 -6 1277 242 104 103 chr13 27626839 27626932 -74246237 - L1MEc LINE L1 -4279 2117 2026 1920 174 3 0 chr13 27626932 27627237 -74245932 + AluJb SINE Alu 1 306 -6 1739 178 0 17 chr13 27627242 27627540 -74245629 - AluJo SINE Alu -19 293 1 1277 242 104 103 chr13 27627540 27627943 -74245226 - L1MEc LINE L1 -4373 2023 1622 293 176 0 0 chr13 27627943 27627994 -74245175 - AluSq SINE Alu 0 300 250 1675 101 0 0 chr13 27627994 27628201 -74244968 - AluSq SINE Alu -106 207 1 2198 141 0 0 chr13 27628209 27628521 -74244648 - AluSx SINE Alu 0 312 1 1277 242 104 103 chr13 27628521 27628724 -74244445 - L1MEc LINE L1 -4780 1616 1415 2062 164 0 0 chr13 27628724 27629034 -74244135 - AluSq SINE Alu -3 310 1 1277 242 104 103 chr13 27629034 27629349 -74243820 - L1MEc LINE L1 -4981 1415 1030 2084 137 0 0 chr13 27629349 27629641 -74243528 - AluSx SINE Alu -20 292 1 294 194 0 0 chr13 27629746 27629818 -74243351 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 24 0 0 0 chr13 27629859 27629883 -74243286 + AT_rich Low_complexity Low_complexity 1 24 0 315 268 65 59 chr13 27629883 27630036 -74243133 + L2 LINE L2 3159 3312 -1 1259 280 93 23 chr13 27630410 27630885 -74242284 - MLT1J LTR MaLR -3 508 1 399 280 56 16 chr13 27631337 27631462 -74241707 + L2 LINE L2 3134 3263 -9 504 303 51 67 chr13 27631475 27631544 -74241625 - MIR SINE MIR -10 252 183 1598 199 0 0 chr13 27631544 27631835 -74241334 - AluJb SINE Alu -21 291 1 504 303 51 67 chr13 27631835 27632019 -74241150 - MIR SINE MIR -79 183 3 807 174 0 35 chr13 27632402 27632546 -74240623 - FLAM_C SINE Alu -4 139 1 4413 75 16 0 chr13 27633275 27633836 -74239333 + L1PA14 LINE L1 5592 6161 0 1480 142 97 22 chr13 27634291 27634559 -74238610 - AluJo SINE Alu -16 296 9 2558 57 0 0 chr13 27635641 27635939 -74237230 + AluY SINE Alu 1 298 -13 249 182 0 0 chr13 27636220 27636275 -74236894 + (CA)n Simple_repeat Simple_repeat 2 56 0 283 25 100 0 chr13 27636365 27636405 -74236764 - AluSg SINE Alu -6 295 252 1229 84 7 0 chr13 27636405 27636560 -74236609 - AluSg SINE Alu -154 156 1 721 183 43 9 chr13 27636568 27636683 -74236486 - FLAM_C SINE Alu -19 124 6 228 35 0 0 chr13 27636746 27636775 -74236394 + (TC)n Simple_repeat Simple_repeat 2 30 0 1996 104 26 23 chr13 27636790 27637099 -74236070 - AluSg SINE Alu 0 310 1 24 77 0 0 chr13 27637173 27637225 -74235944 + GC_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr13 27637280 27637312 -74235857 + GC_rich Low_complexity Low_complexity 1 32 0 2673 192 96 18 chr13 27637628 27638741 -74234428 + L1MC2 LINE L1 4437 5631 -713 1445 152 92 20 chr13 27638746 27639049 -74234120 + L1MC2 LINE L1 6009 6333 -11 339 332 98 10 chr13 27639141 27639346 -74233823 + MIR SINE MIR 40 262 0 378 260 139 90 chr13 27640106 27640239 -74232930 + L3 LINE CR1 1003 1128 -449 2295 69 3 3 chr13 27640239 27640529 -74232640 - AluY SINE Alu -21 290 1 378 260 139 90 chr13 27640529 27640718 -74232451 + L3 LINE CR1 1128 1341 -236 1975 141 13 10 chr13 27640935 27641239 -74231930 + AluSx SINE Alu 1 305 -7 1745 126 4 4 chr13 27641286 27641540 -74231629 + AluSx SINE Alu 29 282 -30 198 0 0 0 chr13 27641543 27641565 -74231604 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1542 170 85 7 chr13 27641722 27642004 -74231165 + AluJb SINE Alu 1 304 -8 630 196 233 0 chr13 27642005 27642138 -74231031 + AluJo/FRAM SINE Alu 139 302 0 215 31 31 0 chr13 27643373 27643405 -74229764 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 336 24 0 0 chr13 27644683 27644724 -74228445 + (A)n Simple_repeat Simple_repeat 1 41 0 2374 91 7 3 chr13 27645123 27645430 -74227739 - AluSp SINE Alu -5 308 1 797 174 8 0 chr13 27645497 27645629 -74227540 + MER3 DNA MER1_type 1 133 -76 1332 192 11 11 chr13 27645632 27645893 -74227276 - AluJo SINE Alu -11 301 41 1764 159 0 54 chr13 27645898 27646213 -74226956 - AluSx SINE Alu -14 298 1 233 167 0 0 chr13 27646213 27646255 -74226914 + MER3 DNA MER1_type 153 194 -15 287 330 29 0 chr13 27646940 27647043 -74226126 + MIR SINE MIR 106 211 -51 866 193 0 0 chr13 27647417 27647567 -74225602 - AluJb SINE Alu -26 286 137 2179 119 10 0 chr13 27647585 27647888 -74225281 - AluSx SINE Alu 0 312 7 609 271 70 80 chr13 27647914 27648152 -74225017 - MLT1L LTR MaLR -81 534 295 234 0 0 0 chr13 27648152 27648178 -74224991 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1901 96 61 0 chr13 27648178 27648439 -74224730 - AluSx SINE Alu -32 280 4 1996 119 0 34 chr13 27648445 27648771 -74224398 - AluSx SINE Alu 0 316 1 609 271 70 80 chr13 27648771 27648921 -74224248 - MLT1L LTR MaLR -324 291 141 2161 113 7 13 chr13 27650151 27650453 -74222716 + AluSx SINE Alu 1 300 -12 2202 116 0 0 chr13 27651457 27651749 -74221420 + AluSq SINE Alu 1 292 -21 1590 157 75 20 chr13 27652058 27652352 -74220817 - AluJo SINE Alu -2 310 1 281 202 53 32 chr13 27652389 27652483 -74220686 + MER34 LTR ERV1 435 530 -12 566 229 114 0 chr13 27652494 27652625 -74220544 - MIR SINE MIR -64 198 53 827 145 0 23 chr13 27652752 27652883 -74220286 - AluJb SINE Alu -101 211 84 2121 121 0 0 chr13 27653273 27653596 -74219573 - AluSx SINE Alu 0 323 1 23 0 0 0 chr13 27653634 27653657 -74219512 + AT_rich Low_complexity Low_complexity 1 23 0 750 243 21 46 chr13 27655715 27655954 -74217215 + LTR16B LTR ERVL 232 464 0 442 313 6 45 chr13 27656111 27656253 -74216916 + MIR SINE MIR 33 168 -94 1829 129 42 14 chr13 27656253 27656539 -74216630 + AluJo SINE Alu 5 298 -14 442 313 6 45 chr13 27656539 27656575 -74216594 + MIR SINE MIR 168 204 -58 200 272 0 39 chr13 27656940 27657043 -74216126 + C-rich Low_complexity Low_complexity 4 102 0 23 0 0 0 chr13 27657522 27657545 -74215624 + GC_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr13 27657607 27657665 -74215504 + GC_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr13 27657788 27657811 -74215358 + GC_rich Low_complexity Low_complexity 1 23 0 207 297 0 0 chr13 27658946 27659010 -74214159 + (CCA)n Simple_repeat Simple_repeat 2 65 0 234 150 0 0 chr13 27659783 27659823 -74213346 + (CAA)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr13 27663033 27663056 -74210113 + AT_rich Low_complexity Low_complexity 1 23 0 263 282 77 13 chr13 27663170 27663248 -74209921 + L2 LINE L2 3100 3182 -90 2030 132 0 3 chr13 27663876 27664179 -74208990 + AluJb SINE Alu 1 302 -10 258 339 83 44 chr13 27664305 27664485 -74208684 + L2 LINE L2 2992 3178 -94 204 289 31 72 chr13 27664712 27664809 -74208360 + L3 LINE CR1 1239 1331 -246 515 246 59 27 chr13 27664855 27665042 -74208127 - HAL1 LINE L1 -5 2502 2310 732 282 74 9 chr13 27665050 27665266 -74207903 + MIR SINE MIR 3 232 -30 528 208 26 104 chr13 27665540 27665732 -74207437 - HAL1 LINE L1 -1551 956 780 790 178 0 0 chr13 27665732 27665850 -74207319 + FLAM_C SINE Alu 2 119 -24 28 0 0 0 chr13 27665850 27665878 -74207291 + AT_rich Low_complexity Low_complexity 1 28 0 256 217 0 0 chr13 27665886 27665932 -74207237 - HAL1 LINE L1 -1727 780 735 * 2699 249 123 55 chr13 27665928 27667738 -74205431 - HAL1 LINE L1 -453 2054 23 264 302 63 70 chr13 27667957 27668143 -74205026 - MIR SINE MIR -61 201 16 22 0 0 0 chr13 27668431 27668453 -74204716 + AT_rich Low_complexity Low_complexity 1 22 0 664 139 37 19 chr13 27668526 27668634 -74204535 + AluJb SINE Alu 17 126 -186 1105 344 103 17 chr13 27668958 27669716 -74203453 + L2 LINE L2 1950 2772 -542 198 338 165 8 chr13 27669822 27669955 -74203214 + L2 LINE L2 2920 3073 -199 1901 119 14 3 chr13 27671248 27671543 -74201626 - AluSq SINE Alu -15 298 1 21 82 0 0 chr13 27673716 27673765 -74199404 + GC_rich Low_complexity Low_complexity 1 49 0 300 240 200 16 chr13 27675649 27675774 -74197395 + MIR3 SINE MIR 58 205 -3 256 274 60 24 chr13 27675801 27675885 -74197284 + L3 LINE CR1 1277 1363 -214 295 323 65 13 chr13 27677567 27677722 -74195447 + MIR3 SINE MIR 20 182 -26 186 43 0 0 chr13 27677789 27677812 -74195357 + (TG)n Simple_repeat Simple_repeat 1 23 0 427 287 129 30 chr13 27677847 27678049 -74195120 + MIR SINE MIR 41 262 0 507 262 94 20 chr13 27678648 27678885 -74194284 - Charlie8 DNA MER1_type -2132 285 17 263 253 242 21 chr13 27679074 27679169 -74194000 - L2 LINE L2 -1 3271 3156 414 258 11 0 chr13 27679609 27679702 -74193467 + MER81 DNA DNA 18 111 -3 * 677 235 135 41 chr13 27679702 27680010 -74193159 + MLT1J1 LTR MaLR 29 366 -80 1081 244 50 45 chr13 27681348 27681729 -74191440 + MLT1J1 LTR MaLR 3 385 -61 310 234 20 164 chr13 27682232 27682433 -74190736 + MER102a DNA MER1_type 152 323 -7 449 266 208 24 chr13 27682684 27682891 -74190278 - MIR SINE MIR -11 251 7 208 351 46 75 chr13 27683334 27683508 -74189661 - L2 LINE L2 0 3272 3104 401 36 18 0 chr13 27683852 27683907 -74189262 + (TC)n Simple_repeat Simple_repeat 1 56 0 1856 147 7 0 chr13 27683947 27684246 -74188923 + AluJb SINE Alu 7 307 -5 197 241 176 37 chr13 27685315 27685423 -74187746 - L2 LINE L2 -944 2370 2248 308 293 84 22 chr13 27685478 27685782 -74187387 + MLT1J2 LTR MaLR 76 416 -34 271 316 58 45 chr13 27686971 27687126 -74186043 - MIR3 SINE MIR -5 203 47 205 325 79 16 chr13 27687200 27687326 -74185843 - L2 LINE L2 0 3313 3180 1945 145 0 0 chr13 27687430 27687726 -74185443 + AluSx SINE Alu 1 296 -16 1608 141 54 30 chr13 27688534 27688831 -74184338 - AluJo SINE Alu -8 304 1 261 0 0 0 chr13 27688865 27688894 -74184275 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1551 188 90 37 chr13 27689015 27689472 -74183697 - Charlie4a DNA MER1_type -2 506 26 310 338 39 0 chr13 27690012 27690166 -74183003 + L1ME4a LINE L1 5571 5730 -391 370 275 58 7 chr13 27690311 27690449 -74182720 + L1ME4a LINE L1 5956 6100 -21 362 182 0 0 chr13 27690615 27690681 -74182488 - AluJ/FRAM SINE Alu -10 292 227 2320 176 105 23 chr13 27691512 27691552 -74181617 - MLT2B2 LTR ERVL 0 515 480 939 80 23 17 chr13 27691552 27691727 -74181442 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 2320 176 105 23 chr13 27691727 27692162 -74181007 - MLT2B2 LTR ERVL -35 480 1 265 229 266 0 chr13 27692983 27693092 -74180077 + MIR SINE MIR 55 192 -70 362 289 25 16 chr13 27693481 27693602 -74179567 + MIR3 SINE MIR 65 186 -22 1840 125 14 10 chr13 27693610 27693907 -74179262 - AluSq SINE Alu -15 298 1 4759 135 36 28 chr13 27694210 27695579 -74177590 - pTR5 LTR ERV1 0 2438 743 195 319 29 14 chr13 27695582 27695651 -74177518 - L2 LINE L2 -76 3196 3127 403 248 48 0 chr13 27695680 27695785 -74177384 + MIR SINE MIR 87 196 -66 225 286 88 11 chr13 27696280 27696371 -74176798 + L2 LINE L2 3175 3272 0 562 191 15 0 chr13 27697030 27697161 -74176008 + CT-rich Low_complexity Low_complexity 1 133 0 2033 123 0 3 chr13 27697380 27697673 -74175496 + AluSx SINE Alu 1 292 -20 295 316 165 53 chr13 27697753 27698019 -74175150 + L3 LINE CR1 901 1196 -381 363 220 142 21 chr13 27699086 27699227 -74173942 + LTR33 LTR ERVL 8 165 -356 335 240 27 67 chr13 27699379 27699529 -74173640 + LTR33 LTR ERVL 371 514 -7 249 297 0 55 chr13 27699535 27699626 -74173543 + L2 LINE L2 3186 3271 -1 708 292 11 31 chr13 27699681 27699941 -74173228 + MER112 DNA MER1_type 6 260 0 2027 136 0 7 chr13 27700083 27700392 -74172777 + AluSx SINE Alu 1 307 -5 2073 124 0 3 chr13 27700503 27700801 -74172368 - AluSx SINE Alu -15 297 1 845 245 91 65 chr13 27701492 27701864 -74171305 - L2 LINE L2 -2 3311 2930 2699 192 31 13 chr13 27702002 27702543 -74170626 - L1MB3 LINE L1 -2 6181 5631 345 102 0 0 chr13 27703402 27703461 -74169708 + (TG)n Simple_repeat Simple_repeat 1 59 0 255 293 86 17 chr13 27703496 27703612 -74169557 + MIR SINE MIR 139 262 0 209 277 0 31 chr13 27703629 27703694 -74169475 + GA-rich Low_complexity Low_complexity 3 65 0 297 154 39 19 chr13 27704845 27704949 -74168220 + (CAGAGA)n Simple_repeat Simple_repeat 2 107 0 359 253 95 32 chr13 27706359 27706517 -74166652 + MLT1J2 LTR MaLR 282 449 -1 558 206 290 40 chr13 27706576 27706824 -74166345 + L2 LINE L2 3004 3313 0 557 173 28 6 chr13 27707155 27707268 -74165901 - MER5A DNA MER1_type -4 185 59 1851 138 0 14 chr13 27707268 27707427 -74165742 - AluSx SINE Alu -20 292 137 2043 123 7 0 chr13 27707427 27707727 -74165442 - AluSq SINE Alu -11 302 1 1851 138 0 14 chr13 27707727 27707809 -74165360 - AluSx SINE Alu -175 137 1 393 111 0 0 chr13 27707809 27707863 -74165306 - Alu SINE Alu -249 54 1 * 955 179 60 0 chr13 27707863 27708035 -74165134 + MER58A DNA MER1_type 41 223 -1 278 118 176 81 chr13 27709329 27709465 -74163704 - MER112 DNA MER1_type -77 183 35 184 194 0 0 chr13 27712722 27712753 -74160416 - L2 LINE L2 -25 3247 3217 2460 56 0 0 chr13 27713347 27713649 -74159520 - AluY SINE Alu -9 302 1 371 308 136 5 chr13 27713913 27714127 -74159042 + MIR SINE MIR 18 259 -3 328 284 81 21 chr13 27714185 27714346 -74158823 + MIR SINE MIR 45 216 -46 2121 80 45 3 chr13 27714551 27714838 -74158331 + AluSc SINE Alu 3 301 -8 1214 307 120 53 chr13 27715617 27716758 -74156411 + L2 LINE L2 1672 2735 -578 2050 93 0 17 chr13 27716758 27717048 -74156121 - AluSc SINE Alu -13 296 12 1214 307 120 53 chr13 27717048 27717167 -74156002 + L2 LINE L2 2735 2845 -468 731 202 92 6 chr13 27717167 27717340 -74155829 - MER5A DNA MER1_type 0 189 2 1214 307 120 53 chr13 27717340 27717571 -74155598 + L2 LINE L2 2845 3312 -1 336 307 121 30 chr13 27718907 27719138 -74154031 + MIR SINE MIR 3 254 -8 572 258 83 68 chr13 27719495 27719747 -74153422 - MIR SINE MIR 0 262 7 255 287 0 0 chr13 27720580 27720747 -74152422 + (CA)n Simple_repeat Simple_repeat 2 168 0 366 198 75 19 chr13 27720869 27720975 -74152194 - L1ME4a LINE L1 -1 6120 6009 353 266 0 0 chr13 27721584 27721663 -74151506 - MER117 DNA MER1_type -45 152 74 1971 114 17 0 chr13 27722291 27722581 -74150588 + AluSx SINE Alu 3 297 -15 307 318 63 24 chr13 27723196 27723322 -74149847 - MIR SINE MIR -110 152 22 2164 101 0 16 chr13 27725121 27725427 -74147742 + AluSc SINE Alu 1 301 -8 321 294 18 28 chr13 27725644 27725753 -74147416 + L3 LINE CR1 329 436 -1141 375 332 89 61 chr13 27725834 27726226 -74146943 + L2 LINE L2 2870 3272 0 256 289 198 37 chr13 27726224 27726411 -74146758 + L3 LINE CR1 558 774 -803 * 2427 55 7 3 chr13 27726505 27726815 -74146354 - AluY SINE Alu 0 311 1 432 0 0 0 chr13 27726934 27726982 -74146187 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 340 279 115 57 chr13 27726982 27727226 -74145943 - L2 LINE L2 -25 3288 3031 * 502 311 16 38 chr13 27727210 27727393 -74145776 + L3 LINE CR1 891 1069 -508 2024 100 0 7 chr13 27727421 27727712 -74145457 - AluSg SINE Alu -21 289 1 1203 81 0 6 chr13 27727712 27727873 -74145296 - AluSp SINE Alu -9 304 145 347 343 184 29 chr13 27727906 27728221 -74144948 + L3 LINE CR1 1144 1507 -70 21 0 0 0 chr13 27728408 27728429 -74144740 + AT_rich Low_complexity Low_complexity 1 21 0 347 269 77 29 chr13 27729362 27729466 -74143703 - L2 LINE L2 -1 3271 3163 316 237 349 6 chr13 27729640 27729809 -74143360 - MIR SINE MIR 0 262 36 784 233 47 55 chr13 27730557 27730832 -74142337 - MER20B DNA MER1_type -292 491 219 346 328 40 45 chr13 27730947 27731145 -74142024 + L2 LINE L2 3117 3313 0 2100 104 0 13 chr13 27732174 27732483 -74140686 - AluSx SINE Alu -7 305 1 251 193 53 0 chr13 27734391 27734448 -74138721 - L2 LINE L2 0 3272 3213 206 96 0 96 chr13 27734768 27734820 -74138349 + (CCCCG)n Simple_repeat Simple_repeat 1 47 0 475 263 80 62 chr13 27737135 27737428 -74135741 - L1MC4a LINE L1 -1844 5964 5663 4281 190 47 18 chr13 27737428 27738266 -74134903 + MER21B LTR ERV1 1 862 -1 475 263 80 62 chr13 27738266 27738310 -74134859 - L1MC4a LINE L1 -2145 5663 5621 2059 119 10 0 chr13 27738812 27739106 -74134063 - AluSx SINE Alu -15 297 1 371 296 67 79 chr13 27739254 27739494 -74133675 + LTR67 LTR ERVL 3 239 -318 421 183 54 11 chr13 27739565 27739658 -74133511 + LTR67 LTR ERVL 458 554 -3 385 331 55 0 chr13 27740176 27740303 -74132866 - L2 LINE L2 0 3272 3139 186 367 17 0 chr13 27740348 27740408 -74132761 - MIR SINE MIR -112 96 36 183 129 0 0 chr13 27740521 27740552 -74132617 + (TC)n Simple_repeat Simple_repeat 1 31 0 527 268 93 22 chr13 27741152 27741200 -74131969 + MIR SINE MIR 59 102 -160 1353 180 33 59 chr13 27741200 27741506 -74131663 + AluJo SINE Alu 3 300 -12 527 268 93 22 chr13 27741506 27741640 -74131529 + MIR SINE MIR 102 254 -8 263 232 29 43 chr13 27741645 27741714 -74131455 - MIR SINE MIR -106 156 89 196 313 0 16 chr13 27741722 27741786 -74131383 - L2 LINE L2 -78 3194 3132 24 32 0 0 chr13 27742081 27742112 -74131057 + AT_rich Low_complexity Low_complexity 1 31 0 674 228 60 102 chr13 27742201 27742244 -74130925 - L1MC4a LINE L1 -1922 5886 5843 2202 95 0 0 chr13 27742244 27742539 -74130630 + AluSg SINE Alu 1 295 -15 674 228 60 102 chr13 27742539 27742877 -74130292 - L1MC4a LINE L1 -1965 5843 5521 315 237 35 79 chr13 27744354 27744468 -74128701 - MIR SINE MIR -42 220 112 23 0 0 0 chr13 27744581 27744604 -74128565 + AT_rich Low_complexity Low_complexity 1 23 0 263 319 0 0 chr13 27744754 27744823 -74128346 - L3 LINE CR1 -1 1576 1508 251 93 23 0 chr13 27744929 27744972 -74128197 + (TG)n Simple_repeat Simple_repeat 2 45 0 252 0 0 0 chr13 27745733 27745761 -74127408 + (T)n Simple_repeat Simple_repeat 1 28 0 2385 81 0 0 chr13 27746735 27747043 -74126126 - AluSg SINE Alu -2 308 1 1337 96 127 22 chr13 27747144 27747373 -74125796 - L1MB4 LINE L1 0 6180 5928 380 57 0 267 chr13 27747384 27747449 -74125720 - MADE1 DNA Mariner -3 77 49 1956 135 0 31 chr13 27747449 27747768 -74125401 + AluSq SINE Alu 1 309 -4 380 57 0 267 chr13 27747768 27747807 -74125362 - MADE1 DNA Mariner -31 49 1 1377 166 12 0 chr13 27748156 27748409 -74124760 - L1MB3 LINE L1 -7 6176 5921 1567 181 13 13 chr13 27748571 27748881 -74124288 + AluJo SINE Alu 1 310 -2 23 0 0 0 chr13 27748881 27748904 -74124265 + AT_rich Low_complexity Low_complexity 1 23 0 1906 148 0 0 chr13 27749205 27749503 -74123666 - AluJo SINE Alu 0 312 15 491 299 87 0 chr13 27750389 27750573 -74122596 + MIR SINE MIR 14 213 -49 528 59 0 0 chr13 27750703 27750729 -74122440 + (TTCC)n Simple_repeat Simple_repeat 1 94 0 528 59 0 0 chr13 27750729 27750797 -74122372 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1029 183 22 27 chr13 27750829 27751053 -74122116 - AluJo SINE Alu -3 309 87 199 280 0 0 chr13 27751231 27751281 -74121888 + L2 LINE L2 2456 2505 -809 1697 166 14 0 chr13 27751626 27751915 -74121254 - AluJb SINE Alu -19 293 1 269 321 0 45 chr13 27751931 27752043 -74121126 + L2 LINE L2 3159 3265 -48 2296 81 0 0 chr13 27752174 27752469 -74120700 - AluY SINE Alu -16 295 1 425 290 124 14 chr13 27752514 27752659 -74120510 + MIR SINE MIR 6 166 -96 217 0 61 0 chr13 27753432 27753465 -74119704 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 301 298 93 15 chr13 27753465 27753651 -74119518 + MIR SINE MIR 28 220 -42 345 326 11 17 chr13 27754147 27754328 -74118841 - MER104 DNA Tc2 0 180 1 264 355 48 36 chr13 27754379 27754545 -74118624 - MIR SINE MIR -69 193 26 2064 62 66 4 chr13 27754687 27754960 -74118209 - AluY SINE Alu -21 290 1 234 293 0 20 chr13 27755446 27755462 -74117707 - L1MB1 LINE L1 -227 5941 5926 514 316 140 18 chr13 27755462 27755911 -74117258 - L1MC4a LINE L1 -1884 5924 5421 423 263 266 1 chr13 27756452 27756635 -74116534 + MIR SINE MIR 30 258 -4 572 298 132 17 chr13 27756770 27757065 -74116104 + MER102a DNA MER1_type 2 330 0 439 301 68 36 chr13 27757204 27757423 -74115746 - MIR SINE MIR -33 229 4 246 285 101 119 chr13 27758437 27758774 -74114395 - L2 LINE L2 -4 3268 2938 965 220 62 59 chr13 27759446 27759854 -74113315 - Zaphod DNA AcHobo -27 4004 3595 * 1016 188 114 45 chr13 27759851 27760297 -74112872 - Zaphod DNA AcHobo -3040 991 515 1206 168 5 0 chr13 27760297 27760506 -74112663 + MER2 DNA MER2_type 1 210 -135 932 261 135 88 chr13 27760615 27761067 -74112102 - Zaphod DNA AcHobo -3515 516 44 572 177 44 55 chr13 27761066 27761247 -74111922 - MER53 DNA DNA -7 182 4 * 623 171 0 9 chr13 27761300 27761411 -74111758 + FLAM_A SINE Alu 25 134 -8 2060 139 0 0 chr13 27761532 27761827 -74111342 - AluSx SINE Alu -17 295 1 202 224 20 0 chr13 27762141 27762190 -74110979 - L2 LINE L2 0 3313 3264 * 571 277 123 5 chr13 27762157 27762352 -74110817 - MIR SINE MIR -10 252 35 1622 197 59 72 chr13 27762576 27763134 -74110035 + L1M4 LINE L1 4640 5190 -956 278 325 138 52 chr13 27764558 27765370 -74107799 + L2 LINE L2 2388 3269 -3 216 0 0 0 chr13 27766339 27766363 -74106806 + (CA)n Simple_repeat Simple_repeat 2 25 0 297 340 60 0 chr13 27766451 27766551 -74106618 + MIR3 SINE MIR 88 193 -15 253 121 318 0 chr13 27767338 27767404 -74105765 + MER31B LTR ERV1 351 437 -29 186 43 0 0 chr13 27767404 27767427 -74105742 + (A)n Simple_repeat Simple_repeat 1 23 0 920 125 0 22 chr13 27767972 27768108 -74105061 + FLAM_C SINE Alu 1 133 0 1033 156 84 9 chr13 27768113 27768338 -74104831 + L1MB2 LINE L1 5928 6169 -2 668 169 8 0 chr13 27768382 27768512 -74104657 + CT-rich Low_complexity Low_complexity 2 132 0 2933 209 76 29 chr13 27768554 27768616 -74104553 - L1ME1 LINE L1 -5 6230 6172 855 199 32 5 chr13 27768616 27768802 -74104367 - L1PA16 LINE L1 -17 6149 5959 2933 209 76 29 chr13 27768802 27770002 -74103167 - L1ME1 LINE L1 -63 6172 4893 333 0 0 0 chr13 27770002 27770039 -74103130 + (TG)n Simple_repeat Simple_repeat 2 38 0 2933 209 76 29 chr13 27770039 27770102 -74103067 - L1ME1 LINE L1 -1342 4893 4834 1086 234 27 10 chr13 27770117 27770644 -74102525 - L1ME1 LINE L1 -2438 3777 2853 4191 216 117 72 chr13 27770658 27770942 -74102227 - L1ME1 LINE L1 -3873 2523 2253 2275 112 26 0 chr13 27770942 27771246 -74101923 - AluSx SINE Alu 0 312 1 4191 216 117 72 chr13 27771246 27771561 -74101608 - L1ME1 LINE L1 -4143 2253 1954 648 205 0 33 chr13 27771561 27771683 -74101486 - FLAM_A SINE Alu -15 118 1 4191 216 117 72 chr13 27771683 27772306 -74100863 - L1ME1 LINE L1 -4442 1954 1360 2037 113 32 26 chr13 27772306 27772616 -74100553 - AluSx SINE Alu 0 312 1 4191 216 117 72 chr13 27772616 27773433 -74099736 - L1ME1 LINE L1 -5036 1360 390 495 222 103 29 chr13 27773476 27773719 -74099450 - HAL1 LINE L1 0 2507 2247 1179 256 163 33 chr13 27773999 27774632 -74098537 - HAL1 LINE L1 -604 1903 1189 2089 118 10 38 chr13 27774636 27774950 -74098219 - AluSx SINE Alu -4 308 4 256 230 35 11 chr13 27775074 27775161 -74098008 + MER53 DNA DNA 101 189 0 * 355 192 0 0 chr13 27775089 27775167 -74098002 - MER53 DNA DNA -108 81 4 315 309 80 6 chr13 27775951 27776113 -74097056 + L1MC/D LINE L1 5607 5780 -2028 21 0 0 0 chr13 27776251 27776272 -74096897 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 27776570 27776603 -74096566 + AT_rich Low_complexity Low_complexity 1 33 0 299 259 15 74 chr13 27776673 27776808 -74096361 + MARNA DNA Mariner 216 342 -244 200 329 0 0 chr13 27778245 27778318 -74094851 + G-rich Low_complexity Low_complexity 1 73 0 345 24 0 0 chr13 27779793 27779835 -74093334 + (A)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 27780651 27780672 -74092497 + AT_rich Low_complexity Low_complexity 1 21 0 239 224 0 52 chr13 27786513 27786571 -74086598 + L2 LINE L2 3203 3257 -15 2145 127 0 3 chr13 27786699 27787006 -74086163 + AluSx SINE Alu 1 306 -6 31 26 0 0 chr13 27787409 27787447 -74085722 + AT_rich Low_complexity Low_complexity 1 38 0 2131 109 10 3 chr13 27787943 27788245 -74084924 + AluSx SINE Alu 1 304 -8 2345 111 0 0 chr13 27788584 27788891 -74084278 + AluSx SINE Alu 1 307 -5 1858 204 154 9 chr13 27789074 27789632 -74083537 + L1MC4a LINE L1 7121 7759 -49 261 119 0 0 chr13 27789639 27789681 -74083488 + (TG)n Simple_repeat Simple_repeat 2 43 0 1422 203 41 0 chr13 27789685 27789951 -74083218 - AluJb SINE Alu -35 277 1 232 96 19 39 chr13 27789953 27790005 -74083164 + L1MC4 LINE L1 7991 8041 -1 922 197 0 0 chr13 27790685 27790837 -74082332 - FAM SINE Alu -27 158 7 672 284 46 5 chr13 27790840 27791034 -74082135 - MIR SINE MIR -28 234 33 993 73 0 0 chr13 27791124 27791248 -74081921 + AluSq/x SINE Alu 1 124 -189 408 115 16 0 chr13 27791250 27791311 -74081858 + AluS SINE Alu 232 293 -19 23 0 0 0 chr13 27792094 27792117 -74081052 + AT_rich Low_complexity Low_complexity 1 23 0 1879 154 26 7 chr13 27792380 27792686 -74080483 + AluJb SINE Alu 1 312 0 2367 101 3 13 chr13 27793190 27793506 -74079663 + AluSq SINE Alu 1 313 0 1104 171 22 40 chr13 27793632 27793684 -74079485 + AluJb SINE Alu 82 133 -179 1380 188 0 96 chr13 27793684 27794008 -74079161 + AluJb SINE Alu 1 293 -19 1104 171 22 40 chr13 27794008 27794177 -74078992 + AluJb SINE Alu 133 299 -13 279 0 0 0 chr13 27794200 27794231 -74078938 + (TG)n Simple_repeat Simple_repeat 1 31 0 396 0 0 0 chr13 27794279 27794323 -74078846 + (TG)n Simple_repeat Simple_repeat 2 45 0 2009 123 3 11 chr13 27794324 27794609 -74078560 - AluSx SINE Alu -29 283 1 855 216 0 12 chr13 27794643 27794810 -74078359 + FRAM SINE Alu 1 165 -1 2312 67 0 0 chr13 27795595 27795900 -74077269 + AluY SINE Alu 1 305 0 441 200 152 36 chr13 27796689 27796854 -74076315 + MER105 DNA DNA 21 204 0 371 337 58 0 chr13 27797011 27797183 -74075986 - MIR SINE MIR -34 228 47 222 329 82 12 chr13 27797396 27797481 -74075688 + L2 LINE L2 3178 3268 -4 216 0 0 0 chr13 27797518 27797542 -74075627 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr13 27797597 27797632 -74075537 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 27798000 27798023 -74075146 + AT_rich Low_complexity Low_complexity 1 23 0 1800 148 11 0 chr13 27798214 27798527 -74074642 + AluSx SINE Alu 1 316 0 2012 129 7 7 chr13 27799151 27799446 -74073723 + AluSg SINE Alu 1 295 -15 1785 139 0 0 chr13 27799471 27799715 -74073454 + AluSx SINE Alu 1 244 -68 2401 82 3 13 chr13 27799749 27800065 -74073104 + AluSp SINE Alu 1 313 0 2218 97 0 0 chr13 27800068 27800366 -74072803 + AluSc SINE Alu 1 298 0 212 280 108 54 chr13 27801081 27801174 -74071995 + MIR SINE MIR 14 111 -151 2248 122 0 0 chr13 27801345 27801648 -74071521 + AluSx SINE Alu 1 303 -9 817 197 40 0 chr13 27802418 27802570 -74070599 - FRAM SINE Alu -8 158 1 2178 126 0 3 chr13 27802577 27802879 -74070290 - AluSx SINE Alu -11 301 1 949 112 0 22 chr13 27803035 27803169 -74070000 + AluJb SINE Alu 1 131 -181 189 326 0 22 chr13 27805055 27805144 -74068025 - L2 LINE L2 -1405 1909 1823 422 198 113 19 chr13 27805662 27805768 -74067401 - MIR SINE MIR -83 179 64 198 132 0 26 chr13 27805759 27805797 -74067372 + L2 LINE L2 3276 3312 -1 * 260 312 32 48 chr13 27806413 27806459 -74066710 + L2 LINE L2 3149 3194 -78 2207 114 0 22 chr13 27806459 27806495 -74066674 - AluSx SINE Alu 0 312 277 216 0 0 0 chr13 27806495 27806519 -74066650 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2207 114 0 22 chr13 27806519 27806797 -74066372 - AluSx SINE Alu -35 277 5 260 312 32 48 chr13 27806797 27806875 -74066294 + L2 LINE L2 3194 3271 -1 348 83 0 0 chr13 27807594 27807642 -74065527 + (TA)n Simple_repeat Simple_repeat 2 49 0 1498 171 3 70 chr13 27807683 27807981 -74065188 - AluJo SINE Alu -30 282 5 2131 143 0 3 chr13 27808058 27808366 -74064803 - AluSg SINE Alu -3 307 1 2539 57 0 0 chr13 27808502 27808801 -74064368 + AluY SINE Alu 1 299 -12 2227 67 0 3 chr13 27808998 27809320 -74063849 + AluY SINE Alu 1 321 0 2279 93 7 7 chr13 27810405 27810706 -74062463 + AluSg SINE Alu 1 301 -9 848 265 263 25 chr13 27810762 27811234 -74061935 + MLT1K LTR MaLR 2 585 -3 1273 186 27 0 chr13 27811307 27811575 -74061594 + AluJb SINE Alu 86 359 0 201 191 24 0 chr13 27811641 27811683 -74061486 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr13 27811804 27811825 -74061344 + AT_rich Low_complexity Low_complexity 1 21 0 289 261 70 84 chr13 27811828 27812043 -74061126 - L1MC4 LINE L1 -372 7670 7459 * 494 216 24 78 chr13 27812027 27812194 -74060975 - L1MC4 LINE L1 -1878 5930 5773 828 264 28 6 chr13 27812215 27812473 -74060696 - L1ME4a LINE L1 -278 5843 5572 30 0 0 0 chr13 27812518 27812548 -74060621 + AT_rich Low_complexity Low_complexity 1 30 0 234 105 0 0 chr13 27812650 27812688 -74060481 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 369 0 0 0 chr13 27812983 27813024 -74060145 + (CA)n Simple_repeat Simple_repeat 2 42 0 210 37 0 0 chr13 27813167 27813194 -74059975 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1669 175 7 21 chr13 27813197 27813483 -74059686 - AluJo SINE Alu -30 282 1 528 276 60 37 chr13 27813924 27814275 -74058894 + MLT1K LTR MaLR 228 586 -2 367 270 88 46 chr13 27814484 27814922 -74058247 + LTR33 LTR ERVL 24 508 -13 191 247 54 75 chr13 27815479 27815572 -74057597 + L2 LINE L2 3150 3240 -32 2262 169 54 41 chr13 27815807 27816268 -74056901 + MLT1C LTR MaLR 1 467 0 491 230 66 20 chr13 27816357 27816509 -74056660 + MIR SINE MIR 94 252 -10 284 306 35 0 chr13 27816524 27816609 -74056560 - MIR SINE MIR -57 151 64 2387 82 0 7 chr13 27816901 27817206 -74055963 + AluSc SINE Alu 3 305 -4 203 86 0 29 chr13 27818147 27818182 -74054987 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr13 27818722 27818745 -74054424 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1964 160 3 0 chr13 27818750 27819056 -74054113 - AluSx SINE Alu -5 307 1 848 134 0 22 chr13 27819554 27819688 -74053481 - FLAM_C SINE Alu -2 131 1 2020 139 3 3 chr13 27820006 27820300 -74052869 + AluSx SINE Alu 2 295 -17 182 61 0 30 chr13 27820300 27820333 -74052836 + (TA)n Simple_repeat Simple_repeat 2 33 0 936 160 0 0 chr13 27820339 27820489 -74052680 + AluJb SINE Alu 143 292 -20 1519 185 11 0 chr13 27820493 27820753 -74052416 - AluJo SINE Alu -49 263 1 406 224 191 7 chr13 27821004 27821151 -74052018 + MER5A DNA MER1_type 9 182 -7 43 0 0 0 chr13 27821597 27821640 -74051529 + AT_rich Low_complexity Low_complexity 1 43 0 225 269 15 0 chr13 27823348 27823415 -74049754 + Tigger7 DNA MER2_type 1774 1841 -646 247 261 205 4 chr13 27823969 27824147 -74049022 - MIR SINE MIR -54 208 3 2624 105 8 6 chr13 27824500 27824862 -74048307 - THE1B LTR MaLR 0 364 2 2233 111 3 3 chr13 27825607 27825914 -74047255 + AluSc SINE Alu 1 307 -2 2142 138 0 0 chr13 27825964 27826276 -74046893 - AluSx SINE Alu 0 312 1 22 0 0 0 chr13 27826458 27826480 -74046689 + AT_rich Low_complexity Low_complexity 1 22 0 364 343 92 18 chr13 27826510 27826793 -74046376 + L3 LINE CR1 1193 1496 -81 2079 123 3 7 chr13 27827521 27827823 -74045346 - AluSx SINE Alu -11 301 1 1933 170 0 0 chr13 27828070 27828359 -74044810 - AluJo SINE Alu -23 289 1 2336 99 3 0 chr13 27828424 27828726 -74044443 - AluSp SINE Alu -10 303 1 1797 155 3 23 chr13 27829165 27829474 -74043695 + AluJo SINE Alu 1 303 -9 2173 114 0 3 chr13 27829924 27830213 -74042956 + AluSg SINE Alu 1 288 -22 2076 134 13 0 chr13 27830415 27830713 -74042456 + AluSx SINE Alu 1 302 -10 2584 40 3 0 chr13 27830713 27831012 -74042157 + AluY SINE Alu 1 301 -10 2174 112 10 0 chr13 27832510 27832805 -74040364 - AluSp SINE Alu -15 298 1 4723 254 73 42 chr13 27832927 27833898 -74039271 + L1MEc LINE L1 34 973 -5423 2391 71 3 7 chr13 27833898 27834193 -74038976 - AluSp SINE Alu -19 294 1 4723 254 73 42 chr13 27834193 27834812 -74038357 + L1MEc LINE L1 973 1571 -4825 1987 148 0 0 chr13 27834812 27835090 -74038079 + AluSg SINE Alu 2 279 -31 315 0 0 0 chr13 27835093 27835128 -74038041 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4723 254 73 42 chr13 27835128 27835490 -74037679 + L1MEc LINE L1 1572 2053 -4343 246 278 79 56 chr13 27836327 27836453 -74036716 + MIR3 SINE MIR 4 132 -76 28 71 0 0 chr13 27836506 27836562 -74036607 + AT_rich Low_complexity Low_complexity 1 56 0 1112 166 9 74 chr13 27836655 27836713 -74036456 + MER46A DNA MER2_type 1 61 -2670 634 159 106 0 chr13 27836713 27836826 -74036343 - FLAM_A SINE Alu -8 125 1 1112 166 9 74 chr13 27836826 27836996 -74036173 + MER46A DNA MER2_type 61 214 -22 2259 105 0 0 chr13 27837016 27837302 -74035867 - AluSq SINE Alu -23 290 5 191 308 0 0 chr13 27837322 27837374 -74035795 + L2 LINE L2 3216 3267 -5 348 83 0 0 chr13 27838099 27838147 -74035022 + (TA)n Simple_repeat Simple_repeat 2 49 0 1490 171 3 70 chr13 27838188 27838486 -74034683 - AluJo SINE Alu -30 282 5 2125 143 0 3 chr13 27838563 27838871 -74034298 - AluSg SINE Alu -3 307 1 2579 57 0 0 chr13 27839007 27839306 -74033863 + AluY SINE Alu 1 299 -12 2279 67 0 3 chr13 27839503 27839825 -74033344 + AluY SINE Alu 1 321 0 341 237 10 31 chr13 27840661 27840758 -74032411 + MER69 DNA AcHobo 2096 2190 -336 868 128 0 30 chr13 27841494 27841627 -74031542 - FLAM_C SINE Alu -3 130 2 294 298 18 61 chr13 27841768 27841995 -74031174 + MLT1L LTR MaLR 107 317 -194 436 255 0 28 chr13 27842709 27842815 -74030354 + MER5A DNA MER1_type 4 106 -83 306 0 0 0 chr13 27843764 27843798 -74029371 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2202 122 0 0 chr13 27843800 27844094 -74029075 - AluSx SINE Alu -18 294 1 2385 107 22 25 chr13 27844642 27845007 -74028162 + THE1B LTR MaLR 1 364 0 2327 99 0 0 chr13 27845785 27846078 -74027091 + AluSc SINE Alu 1 293 -16 10485 22 3 184 chr13 27846165 27846218 -74026951 - SVA Other Other 0 1386 1325 234 0 0 0 chr13 27846218 27846244 -74026925 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 10485 22 3 184 chr13 27846244 27847901 -74025268 - SVA Other Other -61 1325 3 22 0 0 0 chr13 27847901 27847923 -74025246 + GC_rich Low_complexity Low_complexity 1 22 0 476 314 20 25 chr13 27847923 27848165 -74025004 + CT-rich Low_complexity Low_complexity 1 240 0 257 409 0 8 chr13 27848109 27848241 -74024928 + C-rich Low_complexity Low_complexity 3 133 0 * 2064 130 17 3 chr13 27848554 27848846 -74024323 + AluSx SINE Alu 1 296 -16 3194 128 23 54 chr13 27848847 27849455 -74023714 + L1MA7 LINE L1 5701 6289 -2 235 268 179 0 chr13 27849489 27849612 -74023557 - MIR3 SINE MIR -28 180 36 288 95 24 0 chr13 27850590 27850632 -74022537 + MER75 DNA T2_type 462 504 0 1541 253 104 41 chr13 27850648 27850790 -74022379 + L2 LINE L2 2046 2178 -1136 2350 154 48 17 chr13 27850790 27851206 -74021963 - MSTB1 LTR MaLR -2 430 2 1541 253 104 41 chr13 27851206 27851871 -74021298 + L2 LINE L2 2178 2904 -410 431 143 78 0 chr13 27851878 27851955 -74021214 - Charlie4a DNA MER1_type -2 506 424 2035 141 0 6 chr13 27851955 27852268 -74020901 - AluSx SINE Alu -1 311 1 2047 141 0 0 chr13 27852311 27852595 -74020574 - AluSx SINE Alu -25 287 4 291 100 186 0 chr13 27852602 27852672 -74020497 - Charlie4a DNA MER1_type -75 433 351 1885 203 12 15 chr13 27852689 27853098 -74020071 - Charlie4a DNA MER1_type -100 408 1 636 298 114 27 chr13 27853101 27853477 -74019692 + L2 LINE L2 2905 3313 0 23 33 0 0 chr13 27853588 27853618 -74019551 + AT_rich Low_complexity Low_complexity 1 30 0 223 303 62 21 chr13 27853965 27854110 -74019059 - L2 LINE L2 -955 2359 2209 2116 166 63 96 chr13 27855540 27855910 -74017259 + MER69 DNA AcHobo 1932 2312 -214 2480 95 0 0 chr13 27855910 27856214 -74016955 + AluSx SINE Alu 1 304 -8 2116 166 63 96 chr13 27856214 27856400 -74016769 + MER69 DNA AcHobo 2312 2470 -56 1958 145 3 0 chr13 27856400 27856705 -74016464 + AluSx SINE Alu 1 306 0 2116 166 63 96 chr13 27856705 27856761 -74016408 + MER69 DNA AcHobo 2470 2526 0 258 205 246 57 chr13 27857600 27857722 -74015447 + MIR3 SINE MIR 38 182 -26 282 247 55 0 chr13 27858021 27858094 -74015075 - MER91C DNA MER1_type -62 78 2 2415 95 3 0 chr13 27858675 27858980 -74014189 + AluSx SINE Alu 7 312 0 427 252 17 17 chr13 27859274 27859393 -74013776 + MER5B DNA MER1_type 1 119 -59 650 237 7 0 chr13 27859534 27859673 -74013496 + MER5B DNA MER1_type 39 178 0 1911 148 0 29 chr13 27860003 27860313 -74012856 + AluSx SINE Alu 1 301 -11 2127 102 3 3 chr13 27861290 27861573 -74011596 + AluSq SINE Alu 1 372 0 676 67 0 0 chr13 27861573 27861662 -74011507 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 207 0 0 0 chr13 27861810 27861833 -74011336 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2072 119 14 3 chr13 27862369 27862655 -74010514 - AluSq SINE Alu -24 289 1 190 274 60 12 chr13 27863656 27863740 -74009429 - MIR3 SINE MIR -16 192 105 2194 102 34 0 chr13 27864329 27864622 -74008547 + AluY SINE Alu 3 305 -6 1133 153 0 11 chr13 27864625 27864815 -74008354 + AluSx SINE Alu 1 188 -124 577 95 36 0 chr13 27864919 27865034 -74008135 + AluSx SINE Alu 195 312 0 341 263 10 10 chr13 27865812 27865911 -74007258 - MIR3 SINE MIR -5 203 105 188 286 76 59 chr13 27866025 27866144 -74007025 + L3b LINE CR1 1179 1299 -284 2167 132 0 7 chr13 27866695 27867005 -74006164 + AluSq SINE Alu 1 308 -5 253 143 40 24 chr13 27867049 27867175 -74005994 + (TA)n Simple_repeat Simple_repeat 1 128 0 259 256 64 0 chr13 27867332 27867410 -74005759 - L1ME LINE L1 -329 5792 5710 358 129 0 0 chr13 27867693 27867755 -74005414 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 764 142 41 0 chr13 27867761 27867930 -74005239 + CT-rich Low_complexity Low_complexity 1 176 0 247 65 0 0 chr13 27867934 27867965 -74005204 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr13 27867965 27867988 -74005181 + (TC)n Simple_repeat Simple_repeat 1 23 0 1508 207 26 26 chr13 27867988 27868170 -74004999 - AluJb SINE Alu -7 305 121 549 0 0 0 chr13 27868170 27868231 -74004938 + (TG)n Simple_repeat Simple_repeat 2 62 0 1508 207 26 26 chr13 27868231 27868352 -74004817 - AluJb SINE Alu -190 122 2 1721 146 27 4 chr13 27869086 27869378 -74003791 - AluJb SINE Alu 0 313 16 1650 99 47 0 chr13 27869495 27869727 -74003442 + AluSx SINE Alu 62 304 -8 1179 146 41 55 chr13 27869727 27869947 -74003222 - MER4E LTR ERV1 -186 593 377 1033 84 156 0 chr13 27870049 27870203 -74002966 - MER4E LTR ERV1 -601 178 1 181 283 33 17 chr13 27870596 27870656 -74002513 - MIR SINE MIR -51 211 151 205 163 61 0 chr13 27870657 27870706 -74002463 - L2 LINE L2 0 3313 3262 1057 78 0 0 chr13 27870732 27870861 -74002308 + AluSq/x SINE Alu 1 129 -184 6299 224 122 48 chr13 27871040 27871259 -74001910 - L1MC3 LINE L1 0 7785 7584 2291 117 10 0 chr13 27871259 27871568 -74001601 - AluSx SINE Alu 0 312 1 6299 224 122 48 chr13 27871568 27872009 -74001160 - L1MC3 LINE L1 -201 7584 7177 2519 55 6 13 chr13 27872009 27872320 -74000849 - AluY SINE Alu -2 309 1 6299 224 122 48 chr13 27872320 27872760 -74000409 - L1MC3 LINE L1 -608 7177 6771 1089 200 9 14 chr13 27872760 27872980 -74000189 + MER20 DNA MER1_type 1 219 0 6299 224 122 48 chr13 27872980 27873296 -73999873 - L1MC3 LINE L1 -1014 6771 6480 2290 113 0 3 chr13 27873296 27873605 -73999564 + AluSx SINE Alu 1 308 -4 6299 224 122 48 chr13 27873605 27874498 -73998671 - L1MC3 LINE L1 -1305 6480 5298 2193 107 33 3 chr13 27874749 27875079 -73998090 + AluSc SINE Alu 1 339 0 2143 97 3 48 chr13 27875226 27875536 -73997633 + AluSg SINE Alu 1 296 -14 282 221 104 0 chr13 27875829 27875906 -73997263 - MIR SINE MIR -55 207 123 2098 138 0 3 chr13 27876186 27876483 -73996686 - AluJo SINE Alu -16 296 1 556 190 33 43 chr13 27876521 27876705 -73996464 - Charlie7 DNA MER1_type 0 2612 2431 989 302 78 44 chr13 27876754 27877168 -73996001 - Charlie7 DNA MER1_type -2062 550 112 1931 110 18 14 chr13 27877168 27877480 -73995689 - AluSq SINE Alu 0 313 1 989 302 78 44 chr13 27877480 27877590 -73995579 - Charlie7 DNA MER1_type -2500 112 7 2575 116 29 60 chr13 27877590 27877780 -73995389 + Tigger2a DNA MER2_type 1 195 -2513 1900 139 13 10 chr13 27877780 27878081 -73995088 + AluJb SINE Alu 1 302 -10 2575 116 29 60 chr13 27878081 27878167 -73995002 + Tigger2a DNA MER2_type 195 282 -2426 2405 84 7 0 chr13 27878167 27878466 -73994703 + AluSp SINE Alu 1 301 -12 2575 116 29 60 chr13 27878466 27878635 -73994534 + Tigger2a DNA MER2_type 282 433 -1 1418 77 0 0 chr13 27879456 27879637 -73993532 + AluY SINE Alu 131 311 0 1900 126 18 0 chr13 27879696 27880013 -73993156 - AluSx SINE Alu 0 324 3 2109 125 0 0 chr13 27881212 27881499 -73991670 - AluSg SINE Alu -23 287 1 1779 179 0 22 chr13 27881630 27881943 -73991226 + AluSx SINE Alu 2 307 -5 206 105 53 0 chr13 27881953 27881991 -73991178 + A-rich Low_complexity Low_complexity 1 40 0 2104 130 10 0 chr13 27882319 27882620 -73990549 - AluSx SINE Alu -8 304 1 763 211 75 111 chr13 27882632 27882986 -73990183 - HAL1 LINE L1 -147 2360 2026 2241 99 3 0 chr13 27882986 27883311 -73989858 - AluSp SINE Alu 0 326 1 763 211 75 111 chr13 27883311 27883449 -73989720 - HAL1 LINE L1 -481 2026 1885 718 281 92 20 chr13 27883448 27883743 -73989426 - HAL1 LINE L1 -2081 426 111 * 232 125 0 0 chr13 27883877 27883909 -73989260 - MER46A DNA MER2_type 0 236 205 2210 111 3 0 chr13 27883909 27884198 -73988971 + AluSq SINE Alu 1 290 -23 1112 166 9 74 chr13 27884218 27884388 -73988781 - MER46A DNA MER2_type -2517 214 61 634 159 106 0 chr13 27884388 27884501 -73988668 + FLAM_A SINE Alu 1 125 -8 1112 166 9 74 chr13 27884501 27884559 -73988610 - MER46A DNA MER2_type -2670 61 1 28 71 0 0 chr13 27884652 27884708 -73988461 + AT_rich Low_complexity Low_complexity 1 56 0 246 278 79 56 chr13 27884761 27884887 -73988282 - MIR3 SINE MIR -76 132 4 4723 254 73 42 chr13 27885724 27886086 -73987083 - L1MEc LINE L1 -4343 2053 1704 315 0 0 0 chr13 27886086 27886121 -73987048 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1987 148 0 0 chr13 27886124 27886402 -73986767 - AluSg SINE Alu -31 279 2 4723 254 73 42 chr13 27886402 27887021 -73986148 - L1MEc LINE L1 -4693 1703 1105 2391 71 3 7 chr13 27887021 27887316 -73985853 + AluSp SINE Alu 1 294 -19 4723 254 73 42 chr13 27887316 27888287 -73984882 - L1MEc LINE L1 -5291 1105 34 2174 112 10 0 chr13 27888409 27888704 -73984465 + AluSp SINE Alu 1 298 -15 2617 36 3 0 chr13 27890203 27890505 -73982664 - AluY SINE Alu -8 303 1 2114 128 13 0 chr13 27890505 27890802 -73982367 - AluSx SINE Alu -10 302 1 34 55 0 0 chr13 27890941 27890996 -73982173 + AT_rich Low_complexity Low_complexity 1 55 0 494 216 24 78 chr13 27890996 27891163 -73982006 + L1MC4 LINE L1 5773 5930 -1878 255 207 98 24 chr13 27891147 27891229 -73981940 + L1MC4 LINE L1 7459 7546 -496 * 324 106 0 0 chr13 27891310 27891357 -73981812 + Alu SINE Alu 255 301 -1 243 268 138 43 chr13 27891554 27891692 -73981477 + MLT1K LTR MaLR 252 402 -186 4070 149 19 27 chr13 27891705 27892402 -73980767 + LTR8 LTR ERV1 1 691 0 2773 136 57 47 chr13 27892432 27892471 -73980698 - MER21A LTR ERV1 -22 909 872 5311 64 31 0 chr13 27892471 27893141 -73980028 + LTR8 LTR ERV1 1 691 0 2773 136 57 47 chr13 27893141 27893453 -73979716 - MER21A LTR ERV1 -59 872 549 2037 89 100 0 chr13 27893453 27893724 -73979445 - AluSp SINE Alu -15 298 1 2773 136 57 47 chr13 27893724 27893880 -73979289 - MER21A LTR ERV1 -382 549 396 757 245 16 16 chr13 27893891 27894079 -73979090 - AluJb SINE Alu -18 294 107 1200 143 56 5 chr13 27894108 27894324 -73978845 - MER21A LTR ERV1 -704 227 1 349 273 109 0 chr13 27894331 27894441 -73978728 + MLT1K LTR MaLR 435 556 -32 2443 96 0 3 chr13 27895508 27895821 -73977348 + AluSx SINE Alu 1 312 0 188 171 0 0 chr13 27895918 27895953 -73977216 - MIR SINE MIR -111 151 117 297 0 0 0 chr13 27896252 27896285 -73976884 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr13 27896327 27896356 -73976813 + AT_rich Low_complexity Low_complexity 1 29 0 1539 156 8 38 chr13 27896399 27896662 -73976507 - AluJo SINE Alu -57 255 1 2207 148 16 34 chr13 27896666 27897063 -73976106 - L1MB3 LINE L1 -48 6135 5747 486 340 20 5 chr13 27897063 27897266 -73975903 - L3 LINE CR1 -164 1413 1208 1776 140 0 0 chr13 27898439 27898703 -73974466 + AluSx SINE Alu 49 312 0 2344 98 3 0 chr13 27898826 27899122 -73974047 + AluSc SINE Alu 1 297 -12 288 0 0 0 chr13 27899734 27899766 -73973403 + (TC)n Simple_repeat Simple_repeat 2 33 0 1893 171 41 36 chr13 27901793 27902156 -73971013 - MLT1A1 LTR MaLR 0 365 1 281 261 69 23 chr13 27902320 27902450 -73970719 + MER5A DNA MER1_type 4 139 -50 250 281 140 18 chr13 27902553 27902667 -73970502 + MIR SINE MIR 20 147 -115 306 296 51 0 chr13 27902788 27902886 -73970283 + L2 LINE L2 2560 2662 -652 21 0 0 0 chr13 27903337 27903358 -73969811 + AT_rich Low_complexity Low_complexity 1 21 0 3536 154 48 165 chr13 27903404 27904229 -73968940 - L1MC3 LINE L1 0 7785 6865 537 154 22 0 chr13 27904229 27904320 -73968849 - Tigger5 DNA MER2_type 0 2323 2231 231 200 40 0 chr13 27904327 27904377 -73968792 - Tigger5 DNA MER2_type -2270 53 2 3536 154 48 165 chr13 27904377 27904625 -73968544 - L1MC3 LINE L1 -926 6859 6708 2263 144 78 8 chr13 27904636 27905033 -73968136 - MSTB LTR MaLR -1 425 1 28 0 0 0 chr13 27905059 27905087 -73968082 + AT_rich Low_complexity Low_complexity 1 28 0 712 209 7 0 chr13 27905110 27905249 -73967920 - FLAM_C SINE Alu -1 142 3 2251 101 0 3 chr13 27905303 27905599 -73967570 + AluSg SINE Alu 1 295 -15 583 255 60 30 chr13 27905863 27906130 -73967039 + L1ME4a LINE L1 5831 6105 -16 1948 143 0 3 chr13 27906267 27906567 -73966602 - AluJb SINE Alu -13 299 1 27 0 0 0 chr13 27906618 27906645 -73966524 + AT_rich Low_complexity Low_complexity 1 27 0 335 194 28 14 chr13 27906720 27906792 -73966377 - L2 LINE L2 0 3313 3241 363 276 23 51 chr13 27906810 27906897 -73966272 + L1ME4a LINE L1 5690 5778 -343 2406 87 0 13 chr13 27906897 27907207 -73965962 + AluY SINE Alu 1 306 -5 363 276 23 51 chr13 27907207 27907333 -73965836 + L1ME4a LINE L1 5778 5897 -224 1962 122 54 4 chr13 27907486 27907764 -73965405 - AluSg SINE Alu -18 292 1 882 121 0 64 chr13 27908270 27908411 -73964758 - FLAM_C SINE Alu 0 133 2 421 221 229 0 chr13 27908661 27908783 -73964386 - MIR SINE MIR -11 251 102 181 318 12 0 chr13 27908783 27908868 -73964301 + L2 LINE L2 2148 2233 -1081 243 236 160 38 chr13 27908875 27908981 -73964188 + L2 LINE L2 3195 3313 0 355 216 134 0 chr13 27909285 27909382 -73963787 + MIR SINE MIR 14 123 -139 452 300 109 48 chr13 27909389 27909437 -73963732 - MLT1K LTR MaLR 0 588 544 189 0 0 0 chr13 27909437 27909458 -73963711 + (CAA)n Simple_repeat Simple_repeat 1 21 0 452 300 109 48 chr13 27909458 27909897 -73963272 - MLT1K LTR MaLR -44 544 1 403 293 158 34 chr13 27910471 27910768 -73962401 + L2 LINE L2 2904 3237 -76 2128 103 4 4 chr13 27910778 27911090 -73962079 - AluSx SINE Alu 0 312 1 2056 113 4 0 chr13 27911537 27911831 -73961338 - AluSx SINE Alu 0 301 7 608 31 31 10 chr13 27912861 27912957 -73960212 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 2235 98 0 3 chr13 27913187 27913497 -73959672 + AluSx SINE Alu 1 309 0 2168 114 7 3 chr13 27916214 27916522 -73956647 + AluSx SINE Alu 1 309 -3 1466 103 79 5 chr13 27916525 27916739 -73956430 + MER30 DNA MER1_type 1 230 0 233 261 0 58 chr13 27917543 27917612 -73955557 + L2 LINE L2 3206 3270 -2 24 0 0 0 chr13 27918236 27918260 -73954909 + AT_rich Low_complexity Low_complexity 1 24 0 466 186 0 12 chr13 27918270 27918356 -73954813 - AluJ/FLAM SINE Alu -226 86 2 644 241 21 7 chr13 27918872 27919017 -73954152 - MER58B DNA MER1_type 0 341 195 288 234 0 31 chr13 27918988 27919052 -73954117 - MER58B DNA MER1_type -279 62 1 * 269 323 134 25 chr13 27919063 27919264 -73953905 - MIR SINE MIR 0 262 40 2143 126 3 0 chr13 27919853 27920146 -73953023 - AluSx SINE Alu -18 294 1 198 250 14 83 chr13 27920261 27920333 -73952836 - MIR SINE MIR -78 184 118 924 217 0 0 chr13 27920696 27920894 -73952275 - AluJo SINE Alu -1 311 114 316 219 14 0 chr13 27920894 27920967 -73952202 - L1ME2 LINE L1 -15 6149 6076 708 215 37 6 chr13 27921972 27922135 -73951034 + MIR SINE MIR 31 198 -64 875 193 14 45 chr13 27922141 27922364 -73950805 - L2 LINE L2 -3 3310 3095 2188 107 0 0 chr13 27922364 27922644 -73950525 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr13 27922646 27922673 -73950496 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 274 215 25 91 chr13 27923129 27923250 -73949919 + L2 LINE L2 3152 3264 -49 2233 126 7 0 chr13 27926026 27926336 -73946833 - AluSx SINE Alu 0 312 1 660 245 31 20 chr13 27926341 27926537 -73946632 - L1MC5 LINE L1 -54 7907 7710 2036 164 49 49 chr13 27927057 27927296 -73945873 - MSTB LTR MaLR 0 426 185 2185 127 0 0 chr13 27927296 27927587 -73945582 - AluSx SINE Alu -21 291 1 2036 164 49 49 chr13 27927587 27927773 -73945396 - MSTB LTR MaLR -240 186 1 328 308 0 0 chr13 27927945 27928036 -73945133 + L2 LINE L2 3219 3309 -4 503 226 94 31 chr13 27928119 27928278 -73944891 + MIR SINE MIR 46 214 -48 240 86 0 0 chr13 27929403 27929438 -73943731 + (A)n Simple_repeat Simple_repeat 1 35 0 306 0 0 0 chr13 27929923 27929957 -73943212 + (TG)n Simple_repeat Simple_repeat 2 35 0 2229 104 3 3 chr13 27930602 27930899 -73942270 - AluSc SINE Alu -12 297 1 2624 105 8 6 chr13 27931644 27932006 -73941163 + THE1B LTR MaLR 2 364 0 247 261 205 4 chr13 27932359 27932537 -73940632 + MIR SINE MIR 3 208 -54 225 269 15 0 chr13 27933089 27933156 -73940013 - Tigger7 DNA MER2_type -646 1841 1774 2233 126 7 0 chr13 27935060 27935370 -73937799 - AluSx SINE Alu 0 312 1 660 245 31 20 chr13 27935375 27935571 -73937598 - L1MC5 LINE L1 -54 7907 7710 2036 164 49 49 chr13 27936091 27936330 -73936839 - MSTB LTR MaLR 0 426 185 2185 127 0 0 chr13 27936330 27936621 -73936548 - AluSx SINE Alu -21 291 1 2036 164 49 49 chr13 27936621 27936807 -73936362 - MSTB LTR MaLR -240 186 1 328 308 0 0 chr13 27936979 27937070 -73936099 + L2 LINE L2 3219 3309 -4 503 226 94 31 chr13 27937153 27937312 -73935857 + MIR SINE MIR 46 214 -48 240 86 0 0 chr13 27938437 27938472 -73934697 + (A)n Simple_repeat Simple_repeat 1 35 0 306 0 0 0 chr13 27938957 27938991 -73934178 + (TG)n Simple_repeat Simple_repeat 2 35 0 2347 80 3 13 chr13 27939636 27939938 -73933231 - AluSq SINE Alu -12 301 3 369 0 0 0 chr13 27940978 27941019 -73932150 + (TG)n Simple_repeat Simple_repeat 2 42 0 2373 148 46 7 chr13 27941434 27941846 -73931323 - MSTC LTR MaLR 0 428 1 1251 171 9 5 chr13 27943212 27943428 -73929741 + AluJo SINE Alu 83 299 -13 2406 101 0 0 chr13 27944755 27945062 -73928107 + AluSg SINE Alu 4 310 0 286 176 20 0 chr13 27945199 27945250 -73927919 - MER66B LTR ERV1 -140 346 295 1582 101 4 13 chr13 27945387 27945614 -73927555 - AluSp SINE Alu -1 312 88 1236 223 10 14 chr13 27946688 27946979 -73926190 - AluSp SINE Alu -13 290 1 2128 138 0 19 chr13 27947007 27947325 -73925844 + AluJb SINE Alu 1 312 0 1275 128 8 64 chr13 27947466 27947701 -73925468 - AluSq SINE Alu -4 309 88 1731 197 7 3 chr13 27948004 27948314 -73924855 - AluJb SINE Alu -1 311 1 36 53 0 0 chr13 27948319 27948376 -73924793 + AT_rich Low_complexity Low_complexity 1 57 0 1921 126 30 0 chr13 27948397 27948688 -73924481 - AluSg SINE Alu 0 301 3 749 186 16 115 chr13 27948774 27949027 -73924142 - L1MD2 LINE L1 -1 6358 6131 * 21624 87 8 4 chr13 27949011 27949034 -73924135 - L1P LINE L1 -2124 4022 4001 389 98 0 0 chr13 27949034 27949095 -73924074 - L1PA3 LINE L1 -1 6154 6094 21624 87 8 4 chr13 27949095 27952065 -73921104 - L1P LINE L1 -2145 4001 1018 1767 170 35 3 chr13 27952123 27952411 -73920758 - AluJb SINE Alu -15 297 1 1238 114 0 0 chr13 27952418 27952584 -73920585 - AluSx SINE Alu -2 310 145 385 141 0 31 chr13 27952585 27952649 -73920520 - AluJo SINE Alu -121 181 120 993 171 0 47 chr13 27952662 27952832 -73920337 - AluSx SINE Alu -150 162 1 508 186 12 0 chr13 27953000 27953086 -73920083 - MER7C DNA MER2_type -28 574 488 2091 119 0 75 chr13 27953092 27953227 -73919942 - MER1B DNA MER1_type -2379 333 189 1540 116 9 21 chr13 27953227 27953460 -73919709 + MER30 DNA MER1_type 1 230 0 2091 119 0 75 chr13 27953460 27953684 -73919485 - MER1B DNA MER1_type -2523 189 1 * 2482 163 40 50 chr13 27953684 27954186 -73918983 - MER7C DNA MER2_type -105 497 1 1631 117 0 0 chr13 27954648 27954870 -73918299 - AluSg/x SINE Alu -19 293 72 1885 134 31 3 chr13 27954875 27955166 -73918003 - AluSx SINE Alu -11 301 3 2226 106 0 0 chr13 27955599 27955913 -73917256 - AluSq SINE Alu 0 314 1 207 0 0 0 chr13 27955939 27955962 -73917207 + (T)n Simple_repeat Simple_repeat 1 23 0 1629 165 34 3 chr13 27956068 27956359 -73916810 + AluJb SINE Alu 1 300 -12 653 247 124 10 chr13 27956386 27956580 -73916589 + MIR SINE MIR 44 259 -3 1967 109 55 0 chr13 27956600 27956874 -73916295 - AluSx SINE Alu -23 289 1 233 260 0 0 chr13 27957078 27957128 -73916041 + Charlie8 DNA MER1_type 1362 1411 -1006 2323 96 3 10 chr13 27957298 27957477 -73915692 - AluSx SINE Alu 0 312 134 2228 110 3 0 chr13 27957477 27957798 -73915371 - AluSp SINE Alu 0 313 1 2323 96 3 10 chr13 27957798 27957932 -73915237 - AluSx SINE Alu -178 134 1 21 0 0 0 chr13 27958060 27958081 -73915088 + AT_rich Low_complexity Low_complexity 1 21 0 1459 204 145 85 chr13 27958232 27958866 -73914303 - LTR1B LTR ERV1 -88 738 67 378 276 20 23 chr13 27959008 27959313 -73913856 + GA-rich Low_complexity Low_complexity 1 304 0 216 148 34 45 chr13 27959336 27959424 -73913745 + GA-rich Low_complexity Low_complexity 1 87 0 369 258 26 23 chr13 27959497 27959761 -73913408 + GA-rich Low_complexity Low_complexity 1 264 0 299 98 0 20 chr13 27959761 27959812 -73913357 - LTR1B LTR ERV1 -776 50 1 760 189 49 0 chr13 27959837 27960001 -73913168 + L1MC1 LINE L1 6162 6333 0 296 271 17 34 chr13 27960011 27960129 -73913040 - MIR SINE MIR 0 262 147 247 349 40 24 chr13 27960220 27960346 -73912823 - MIR SINE MIR -112 150 23 627 288 35 35 chr13 27960663 27960892 -73912277 - MIR SINE MIR -9 253 25 2021 141 0 17 chr13 27961401 27961720 -73911449 + AluSx SINE Alu 1 312 0 675 269 124 22 chr13 27961916 27962191 -73910978 + L1ME4a LINE L1 5566 5868 -253 1239 217 51 74 chr13 27962228 27962577 -73910592 - L1MC5 LINE L1 -66 7895 7562 2329 96 0 7 chr13 27962577 27962878 -73910291 + AluSq SINE Alu 1 299 -14 1239 217 51 74 chr13 27962878 27963094 -73910075 - L1MC5 LINE L1 -399 7562 7343 2011 159 86 0 chr13 27963123 27963482 -73909687 + MLT1B LTR MaLR 1 390 0 828 130 0 46 chr13 27963602 27963733 -73909436 + FLAM_C SINE Alu 1 125 -18 645 286 77 15 chr13 27963756 27963952 -73909217 - MIR SINE MIR -28 234 27 741 300 44 4 chr13 27964390 27964617 -73908552 + MIR SINE MIR 2 237 -25 7951 110 27 25 chr13 27965697 27966938 -73906231 - MER52C LTR ERV1 0 1278 35 1254 185 46 108 chr13 27967718 27968107 -73905062 + MLT1A1 LTR MaLR 1 365 0 2035 82 0 4 chr13 27968205 27968472 -73904697 + AluSg SINE Alu 14 279 -31 328 0 20 41 chr13 27968475 27968524 -73904645 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 452 291 65 34 chr13 27968554 27968780 -73904389 - MIR SINE MIR -6 256 21 22 0 0 0 chr13 27968799 27968821 -73904348 + AT_rich Low_complexity Low_complexity 1 22 0 2104 149 18 39 chr13 27969641 27969680 -73903489 - THE1C LTR MaLR 0 375 337 2104 141 0 0 chr13 27969680 27969992 -73903177 + AluSx SINE Alu 1 312 0 2104 149 18 39 chr13 27969992 27970335 -73902834 - THE1C LTR MaLR -38 337 1 241 276 134 55 chr13 27970879 27971006 -73902163 + L2 LINE L2 3136 3272 0 1691 168 93 110 chr13 27971494 27971895 -73901274 - MLT2B1 LTR ERVL 0 520 129 1748 167 21 70 chr13 27971895 27972205 -73900964 + MLT1A1 LTR MaLR 1 290 -75 2144 99 0 3 chr13 27972205 27972498 -73900671 - AluSq SINE Alu -16 297 6 1748 167 21 70 chr13 27972498 27972571 -73900598 + MLT1A1 LTR MaLR 290 365 0 1691 168 93 110 chr13 27972571 27972698 -73900471 - MLT2B1 LTR ERVL -391 129 1 387 241 60 9 chr13 27972791 27972907 -73900262 - LTR67 LTR ERVL 0 557 436 276 258 21 129 chr13 27973093 27973287 -73899882 - LTR67 LTR ERVL -364 193 21 1633 175 145 7 chr13 27973936 27974370 -73898799 - LTR54B LTR ERV1 -4 494 1 242 360 9 45 chr13 27974982 27975000 -73898169 + L2 LINE L2 2444 2461 -853 2232 71 3 13 chr13 27975000 27975308 -73897861 - AluSx SINE Alu -7 305 1 242 360 9 45 chr13 27975308 27975400 -73897769 + L2 LINE L2 2461 2550 -764 2401 51 3 13 chr13 27975628 27975940 -73897229 - AluY SINE Alu -2 309 1 2018 115 0 20 chr13 27976368 27976672 -73896497 - AluSx SINE Alu -14 298 1 1285 259 120 41 chr13 27976852 27977461 -73895708 + MLT2F LTR ERVL 1 657 -6 358 288 55 31 chr13 27977994 27978157 -73895012 + MIR SINE MIR 96 262 0 382 313 52 8 chr13 27978200 27978334 -73894835 - MIR SINE MIR 0 262 123 1792 185 93 14 chr13 27978604 27979036 -73894133 + MLT1C LTR MaLR 2 467 0 445 273 126 16 chr13 27979163 27979346 -73893823 - MIR SINE MIR -59 203 1 1877 203 7 56 chr13 27980213 27980292 -73892877 - MSTD LTR MaLR -2 394 313 2037 119 6 3 chr13 27980292 27980603 -73892566 + AluSx SINE Alu 1 312 0 1877 203 7 56 chr13 27980603 27980936 -73892233 - MSTD LTR MaLR -83 313 2 331 276 38 0 chr13 27980957 27981062 -73892107 + LTR33 LTR ERVL 33 141 -380 275 81 0 0 chr13 27981113 27981150 -73892019 + MLT2A2 LTR ERVL 267 303 -150 * 496 261 69 15 chr13 27981117 27981247 -73891922 + MLT2B3 LTR ERVL 267 403 -151 246 118 0 0 chr13 27981229 27981263 -73891906 + MLT2A2 LTR ERVL 293 326 -127 * 535 105 0 0 chr13 27981291 27981367 -73891802 + Alu SINE Alu 220 295 -14 326 0 0 0 chr13 27981367 27981404 -73891765 - MLT2A1 LTR ERVL -346 98 62 615 49 0 0 chr13 27981404 27981486 -73891683 - MLT2A2 LTR ERVL -371 82 1 202 254 0 36 chr13 27981564 27981619 -73891550 + CT-rich Low_complexity Low_complexity 2 54 0 1362 165 9 120 chr13 27982300 27982633 -73890536 - AluJo SINE Alu -4 298 3 644 234 121 40 chr13 27982871 27983097 -73890072 + MIR SINE MIR 19 258 -4 2099 164 22 3 chr13 27984071 27984437 -73888732 - L1MB2 LINE L1 0 6171 5799 432 270 84 22 chr13 27984724 27984902 -73888267 + MIR SINE MIR 62 250 -12 1283 174 4 68 chr13 27985161 27985442 -73887727 + AluJo SINE Alu 1 263 -49 266 0 0 29 chr13 27985941 27985976 -73887193 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1904 109 0 4 chr13 27985984 27986258 -73886911 - AluSx SINE Alu -39 273 1 397 305 41 61 chr13 27987252 27987449 -73885720 - L1ME4a LINE L1 -154 5967 5775 319 250 21 21 chr13 27987452 27987548 -73885621 - L1ME4a LINE L1 -392 5729 5634 4453 230 165 76 chr13 27988014 27988266 -73884903 - HAL1 LINE L1 0 2507 2279 1624 146 0 51 chr13 27988266 27988560 -73884609 - AluJb SINE Alu -11 301 23 4453 230 165 76 chr13 27988560 27990569 -73882600 - HAL1 LINE L1 -228 2279 44 296 339 36 26 chr13 27990945 27991060 -73882109 - MIR SINE MIR -61 147 40 249 300 164 18 chr13 27992628 27992738 -73880431 - MIR SINE MIR -128 134 9 27 29 0 0 chr13 27996520 27996554 -73876615 + AT_rich Low_complexity Low_complexity 1 34 0 829 276 154 34 chr13 27996643 27997110 -73876059 - LTR33A LTR ERVL 0 523 1 2089 161 98 44 chr13 27997347 27997464 -73875705 + MLT1D LTR MaLR 3 112 -393 2138 114 3 16 chr13 27997464 27997779 -73875390 - AluSx SINE Alu -1 311 1 2089 161 98 44 chr13 27997779 27998138 -73875031 + MLT1D LTR MaLR 112 505 0 370 241 62 25 chr13 27998423 27998574 -73874595 + MLT1F1 LTR MaLR 42 198 -369 243 216 0 0 chr13 27998595 27998698 -73874471 + CT-rich Low_complexity Low_complexity 1 103 0 1285 117 146 181 chr13 27999257 27999676 -73873493 - MER4A LTR ERV1 0 664 261 507 263 67 34 chr13 27999745 27999924 -73873245 - MIR SINE MIR -70 192 8 1916 129 7 0 chr13 28000046 28000375 -73872794 - AluSx SINE Alu 0 331 1 1068 170 9 65 chr13 28000410 28000640 -73872529 - MER20 DNA MER1_type -2 217 1 312 91 0 0 chr13 28000781 28000825 -73872344 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1636 171 34 0 chr13 28000825 28001117 -73872052 - AluJb SINE Alu -10 302 1 1064 255 93 26 chr13 28001614 28001991 -73871178 - LTR16C LTR ERVL -6 485 84 1895 261 59 33 chr13 28002012 28002584 -73870585 - MLT1E LTR MaLR 0 593 7 2053 120 3 0 chr13 28003533 28003833 -73869336 + AluSg SINE Alu 1 301 -9 1988 146 3 0 chr13 28004071 28004441 -73868728 - AluSx SINE Alu 0 371 1 242 220 88 0 chr13 28004892 28004983 -73868186 + L2 LINE L2 949 1047 -2267 1082 188 14 19 chr13 28005017 28005225 -73867944 - MSTD LTR MaLR -3 393 187 1015 118 6 30 chr13 28005227 28005396 -73867773 - AluSg/x SINE Alu -11 299 135 918 159 19 18 chr13 28005398 28005564 -73867605 - MSTD LTR MaLR -243 153 7 3816 267 132 16 chr13 28005571 28007579 -73865590 + L2 LINE L2 1063 3313 0 1626 41 0 0 chr13 28008254 28008448 -73864721 + L1PA6 LINE L1 5959 6152 -2 2100 166 24 7 chr13 28008482 28008891 -73864278 + L1MB8 LINE L1 5751 6166 -12 339 197 19 188 chr13 28008955 28009062 -73864107 + MER69A DNA AcHobo 2 59 -2467 2194 109 0 0 chr13 28009062 28009365 -73863804 - AluSg SINE Alu -7 303 1 339 197 19 188 chr13 28009365 28009465 -73863704 + MER69A DNA AcHobo 59 174 -3 24 53 0 0 chr13 28009817 28009855 -73863314 + AT_rich Low_complexity Low_complexity 1 38 0 388 301 98 25 chr13 28010966 28011202 -73861967 - MIR SINE MIR -7 255 3 940 226 71 4 chr13 28011329 28011595 -73861574 + L2 LINE L2 2228 2511 -803 9334 103 9 7 chr13 28011598 28012874 -73860295 - HSMAR1 DNA Mariner -3 1284 6 1015 230 224 26 chr13 28012874 28013295 -73859874 + L2 LINE L2 2514 2850 -463 2075 195 6 3 chr13 28013295 28013659 -73859510 - MLT1A1 LTR MaLR 0 365 1 1015 230 224 26 chr13 28013659 28013899 -73859270 + L2 LINE L2 2850 3312 -1 1608 146 56 14 chr13 28014030 28014317 -73858852 - AluJb SINE Alu -11 301 3 494 194 95 122 chr13 28014973 28015231 -73857938 - L1MC5 LINE L1 -14 7947 7697 1938 149 0 3 chr13 28015231 28015539 -73857630 + AluJb SINE Alu 1 307 -5 494 194 95 122 chr13 28015539 28015584 -73857585 - L1MC5 LINE L1 -264 7697 7652 368 291 81 34 chr13 28015822 28015970 -73857199 + MIR SINE MIR 50 204 -58 1940 125 0 67 chr13 28016079 28016408 -73856761 + AluSx SINE Alu 1 307 -5 667 289 95 48 chr13 28017223 28017559 -73855610 + L2 LINE L2 2916 3267 -5 350 168 40 173 chr13 28017571 28017695 -73855474 - MIR SINE MIR -11 251 155 2067 99 7 17 chr13 28017695 28017987 -73855182 - AluSx SINE Alu -23 289 1 350 168 40 173 chr13 28017987 28018035 -73855134 - MIR SINE MIR -107 155 102 862 138 0 15 chr13 28018809 28018939 -73854230 + FLAM_A SINE Alu 1 128 -5 203 229 0 0 chr13 28019015 28019050 -73854119 + (CGTG)n Simple_repeat Simple_repeat 4 38 0 1579 263 118 39 chr13 28019194 28019698 -73853471 + MER115 DNA AcHobo 11 575 -118 2279 200 113 16 chr13 28019698 28020257 -73852912 + MER90 LTR ERV1 2 614 0 1579 263 118 39 chr13 28020257 28020372 -73852797 + MER115 DNA AcHobo 575 679 -14 1962 108 0 0 chr13 28020971 28021240 -73851929 - AluSx SINE Alu -2 310 42 461 127 14 0 chr13 28021240 28021311 -73851858 - AluS SINE Alu -239 73 2 2061 114 0 32 chr13 28021808 28022116 -73851053 - AluSx SINE Alu -14 298 1 340 108 45 27 chr13 28022117 28022219 -73850950 + T-rich Low_complexity Low_complexity 3 109 -6 2279 89 3 10 chr13 28022219 28022533 -73850636 - AluSx SINE Alu 0 312 1 858 137 0 0 chr13 28022558 28022675 -73850494 + FLAM_C SINE Alu 2 118 -15 34 24 0 0 chr13 28022675 28022716 -73850453 + AT_rich Low_complexity Low_complexity 1 41 0 547 272 48 77 chr13 28022716 28022811 -73850358 - L1MC4 LINE L1 -24 8018 7922 306 0 0 0 chr13 28022811 28022845 -73850324 + (CA)n Simple_repeat Simple_repeat 2 35 0 547 272 48 77 chr13 28022845 28023131 -73850038 - L1MC4 LINE L1 -120 7922 7544 5213 129 28 23 chr13 28023148 28024022 -73849147 - L1MC1 LINE L1 -16 6317 5440 182 330 22 22 chr13 28024023 28024114 -73849055 - L3 LINE CR1 -164 1413 1323 775 234 16 96 chr13 28024234 28024537 -73848632 + Charlie8 DNA MER1_type 1 279 -2138 247 267 53 0 chr13 28024586 28024661 -73848508 + Charlie8 DNA MER1_type 2339 2417 0 1217 189 68 4 chr13 28024709 28024881 -73848288 - AluJo SINE Alu 0 307 109 198 0 0 0 chr13 28024881 28024903 -73848266 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1217 189 68 4 chr13 28024903 28025019 -73848150 - AluJo SINE Alu -198 109 2 255 239 14 42 chr13 28025026 28025097 -73848072 - MIR SINE MIR -75 187 119 208 270 63 16 chr13 28026461 28026524 -73846645 - L2 LINE L2 -55 3217 3152 467 296 136 0 chr13 28026646 28026808 -73846361 - MER63A DNA MER1_type -23 187 4 948 147 0 0 chr13 28026837 28026987 -73846182 + FRAM SINE Alu 8 157 -19 396 228 50 95 chr13 28027439 28027628 -73845541 - MIR3 SINE MIR -7 201 17 2405 162 86 35 chr13 28027644 28028157 -73845012 + LTR55 LTR ERV 1 539 -9 1719 166 0 3 chr13 28028198 28028487 -73844682 + AluJb SINE Alu 1 288 -24 26 0 0 0 chr13 28028488 28028514 -73844655 + AT_rich Low_complexity Low_complexity 1 26 0 442 221 52 44 chr13 28029398 28029534 -73843635 - MIR SINE MIR -47 215 79 1181 153 64 70 chr13 28029566 28029880 -73843289 + MER33 DNA MER1_type 6 317 -7 576 268 90 38 chr13 28031240 28031425 -73841744 + MIR3 SINE MIR 5 205 -3 2371 93 0 0 chr13 28031747 28032060 -73841109 - AluSq SINE Alu 0 313 1 1263 203 12 92 chr13 28032593 28032881 -73840288 - Charlie5 DNA MER1_type 0 2624 2379 1698 158 11 0 chr13 28032881 28033166 -73840003 - AluJo SINE Alu -23 289 2 1263 203 12 92 chr13 28033166 28033300 -73839869 - Charlie5 DNA MER1_type -245 2379 2236 553 217 17 0 chr13 28033310 28033430 -73839739 - MER3 DNA MER1_type -87 122 48 268 264 18 45 chr13 28033517 28033627 -73839542 + L2 LINE L2 3160 3266 -6 186 43 0 0 chr13 28034700 28034723 -73838446 + (TTG)n Simple_repeat Simple_repeat 2 24 0 768 286 24 78 chr13 28035430 28035842 -73837327 - MLT1K LTR MaLR 0 588 199 511 296 62 36 chr13 28036136 28036410 -73836759 + L1MC4 LINE L1 7618 7898 -144 339 25 0 0 chr13 28036417 28036457 -73836712 + (TG)n Simple_repeat Simple_repeat 2 41 0 650 166 283 0 chr13 28036888 28037033 -73836136 - MLT1D LTR MaLR 0 505 320 1359 212 61 88 chr13 28037266 28037375 -73835794 + L1MC5 LINE L1 7260 7370 -591 2177 68 3 19 chr13 28037375 28037721 -73835448 + AluY SINE Alu 1 311 0 1359 212 61 88 chr13 28037721 28038088 -73835081 + L1MC5 LINE L1 7370 7746 -215 248 0 0 30 chr13 28038088 28038121 -73835048 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 2266 60 4 0 chr13 28038125 28038406 -73834763 - AluY SINE Alu -29 282 1 1359 212 61 88 chr13 28038406 28038451 -73834718 + L1MC5 LINE L1 7749 7794 -167 11066 34 1 0 chr13 28038451 28040514 -73832655 + L1PA5 LINE L1 4090 6153 -1 1359 212 61 88 chr13 28040514 28040674 -73832495 + L1MC5 LINE L1 7794 7929 -32 814 241 85 98 chr13 28040699 28041217 -73831952 + MLT1J LTR MaLR 1 511 0 246 297 16 0 chr13 28041302 28041366 -73831803 - L2 LINE L2 -220 3052 2988 1293 171 105 49 chr13 28041402 28041688 -73831481 + AluJb SINE Alu 1 302 0 237 265 20 82 chr13 28042237 28042335 -73830834 + MIR SINE MIR 56 147 -61 391 152 22 87 chr13 28043010 28043102 -73830067 - MLT1D LTR MaLR -323 182 95 2130 96 3 7 chr13 28043228 28043530 -73829639 + AluSx SINE Alu 1 301 -11 1710 199 39 34 chr13 28043530 28043938 -73829231 - MLT1D LTR MaLR -95 410 1 1570 174 7 4 chr13 28045611 28045909 -73827260 - AluJb SINE Alu 0 307 9 1864 132 0 24 chr13 28045982 28046277 -73826892 + AluSx SINE Alu 1 288 -24 380 213 143 49 chr13 28046304 28046548 -73826621 + L1ME4a LINE L1 5855 6121 0 438 241 86 37 chr13 28047210 28047372 -73825797 + MIR SINE MIR 69 238 -24 925 111 0 42 chr13 28047626 28047770 -73825399 + AluJo SINE Alu 2 139 -173 1563 168 15 4 chr13 28047774 28048042 -73825127 + AluJo SINE Alu 21 291 -21 4319 188 51 9 chr13 28049022 28049391 -73823778 - MER54A LTR ERVL -2 899 547 2313 56 10 7 chr13 28049391 28049696 -73823473 + AluY SINE Alu 3 308 -3 4319 188 51 9 chr13 28049696 28050189 -73822980 - MER54A LTR ERVL -354 547 1 753 212 61 30 chr13 28050321 28050519 -73822650 - MIR SINE MIR -11 251 48 250 261 118 65 chr13 28051029 28051182 -73821987 + L2 LINE L2 3108 3268 -4 1794 165 0 0 chr13 28052247 28052538 -73820631 - AluJb SINE Alu -20 292 2 1695 69 142 0 chr13 28053722 28054010 -73819159 + AluY SINE Alu 1 323 0 2340 98 48 31 chr13 28054091 28054449 -73818720 + THE1B LTR MaLR 1 364 0 448 241 36 9 chr13 28055913 28056025 -73817144 + MIR SINE MIR 32 146 -116 2106 127 0 10 chr13 28056581 28056895 -73816274 + AluSx SINE Alu 1 311 -1 374 332 31 57 chr13 28057113 28057188 -73815981 - L2 LINE L2 -3 3269 3194 850 132 0 31 chr13 28057188 28057317 -73815852 + FLAM_C SINE Alu 3 127 -6 374 332 31 57 chr13 28057317 28057434 -73815735 - L2 LINE L2 -78 3194 3082 382 194 21 11 chr13 28057961 28058054 -73815115 - L1ME3A LINE L1 0 6170 6077 202 294 59 0 chr13 28058913 28058981 -73814188 - L2 LINE L2 0 3272 3201 886 289 87 18 chr13 28059036 28059412 -73813757 + MLT1J2 LTR MaLR 66 444 -6 2247 97 0 7 chr13 28059495 28059803 -73813366 + AluSg SINE Alu 1 306 -4 319 232 24 73 chr13 28059856 28059938 -73813231 + L1MC4 LINE L1 6635 6712 -1330 331 290 71 18 chr13 28060051 28060220 -73812949 + MLT1K LTR MaLR 229 406 -182 1529 246 90 44 chr13 28060664 28061230 -73811939 - MLT1G1 LTR MaLR -3 592 1 361 284 26 84 chr13 28061302 28061351 -73811818 + MLT1K LTR MaLR 393 443 -145 1800 163 0 7 chr13 28061351 28061671 -73811498 + AluSx SINE Alu 1 312 0 361 284 26 84 chr13 28061671 28061811 -73811358 + MLT1K LTR MaLR 443 571 -17 1971 133 0 7 chr13 28061874 28062174 -73810995 - AluSx SINE Alu -14 298 1 311 216 0 40 chr13 28062218 28062292 -73810877 + FLAM SINE Alu 64 125 -8 823 145 8 8 chr13 28062303 28062434 -73810735 + FLAM_C SINE Alu 1 131 -12 371 319 17 17 chr13 28062445 28062564 -73810605 - L2 LINE L2 -4 3309 3191 277 232 42 53 chr13 28062659 28062754 -73810415 - L2 LINE L2 -1206 2108 2015 2318 75 0 0 chr13 28062793 28063087 -73810082 + AluSc SINE Alu 1 294 -15 216 67 0 0 chr13 28063298 28063328 -73809841 + (GA)n Simple_repeat Simple_repeat 1 30 0 432 0 0 0 chr13 28063328 28063376 -73809793 + (TG)n Simple_repeat Simple_repeat 2 49 0 388 276 32 87 chr13 28063713 28063898 -73809271 - MIR3 SINE MIR -4 204 30 449 312 39 34 chr13 28064542 28064747 -73808422 - MIR SINE MIR 0 262 57 348 259 24 0 chr13 28064854 28064939 -73808230 - MIR SINE MIR -110 152 66 1553 181 20 10 chr13 28064966 28065259 -73807910 - AluJb SINE Alu -16 296 1 579 245 86 0 chr13 28065308 28065447 -73807722 - MIR SINE MIR -5 257 107 2171 118 0 0 chr13 28065647 28065944 -73807225 + AluSx SINE Alu 2 298 -14 389 273 94 38 chr13 28066064 28066371 -73806798 + MLT1J LTR MaLR 219 542 0 416 266 133 73 chr13 28067066 28067435 -73805734 - MLT1K LTR MaLR -11 577 187 2321 87 0 0 chr13 28067472 28067770 -73805399 + AluSg SINE Alu 1 298 -12 1087 147 17 82 chr13 28068103 28068335 -73804834 - MER20 DNA MER1_type 0 219 3 424 265 70 76 chr13 28068604 28068711 -73804458 - MIR SINE MIR -70 192 85 1852 122 14 10 chr13 28068711 28069007 -73804162 + AluJb SINE Alu 1 297 -15 424 265 70 76 chr13 28069007 28069084 -73804085 - MIR SINE MIR -177 85 9 491 289 8 63 chr13 28069426 28069572 -73803597 + MIR3 SINE MIR 6 143 -65 1794 169 0 0 chr13 28069572 28069868 -73803301 - AluJo SINE Alu -15 297 2 491 289 8 63 chr13 28069868 28069911 -73803258 + MIR3 SINE MIR 143 187 -21 1581 141 74 27 chr13 28071115 28071413 -73801756 - AluJo SINE Alu 0 312 1 359 311 61 45 chr13 28071742 28071874 -73801295 + L2 LINE L2 3180 3313 0 276 291 0 13 chr13 28071926 28072005 -73801164 + L2 LINE L2 3235 3312 -1 224 308 13 0 chr13 28072594 28072672 -73800497 + CT-rich Low_complexity Low_complexity 4 82 0 1298 224 128 17 chr13 28073115 28073530 -73799639 - MLT1C LTR MaLR -1 466 6 1138 179 63 5 chr13 28073725 28073932 -73799237 + MER20 DNA MER1_type 1 219 0 1935 106 3 3 chr13 28074091 28074411 -73798758 - AluSx SINE Alu 0 320 1 3287 74 2 9 chr13 28074483 28074928 -73798241 - L1PA13 LINE L1 -2 6161 5720 298 323 151 29 chr13 28075127 28075539 -73797630 + L2 LINE L2 2851 3312 -1 2597 103 3 0 chr13 28075861 28076228 -73796941 + L1PA8 LINE L1 5805 6172 0 655 272 112 18 chr13 28076525 28076877 -73796292 + MLT1J LTR MaLR 51 476 -35 412 308 124 58 chr13 28077492 28077944 -73795225 - L2 LINE L2 0 3313 2832 187 225 56 56 chr13 28079180 28079251 -73793918 + MIR SINE MIR 142 212 -50 231 36 0 0 chr13 28081313 28081341 -73791828 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 219 159 0 23 chr13 28082558 28082602 -73790567 + GA-rich Low_complexity Low_complexity 3 45 0 278 238 126 73 chr13 28082636 28082787 -73790382 - MIR SINE MIR -59 203 45 1903 108 11 4 chr13 28084101 28084404 -73788765 - AluSx SINE Alu 0 305 1 252 149 0 0 chr13 28084547 28084594 -73788575 + (TA)n Simple_repeat Simple_repeat 2 48 0 308 246 0 0 chr13 28084616 28084673 -73788496 - L1MC4 LINE L1 -1334 6708 6652 201 74 0 0 chr13 28084971 28084998 -73788171 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 315 254 76 42 chr13 28085399 28085517 -73787652 - L1ME LINE L1 -473 5648 5527 563 306 32 0 chr13 28085707 28085864 -73787305 - MER91B DNA MER1_type 0 190 29 195 366 0 0 chr13 28086237 28086319 -73786850 + L2 LINE L2 2449 2530 -784 2027 149 0 3 chr13 28087154 28087463 -73785706 + AluSx SINE Alu 1 308 -4 1333 246 108 46 chr13 28087585 28088057 -73785112 + MER77 LTR ERV1 119 599 -6 286 218 36 0 chr13 28088031 28088086 -73785083 + MER21A LTR ERV1 682 738 -193 * 203 272 128 48 chr13 28088112 28088237 -73784932 + L3b LINE CR1 1328 1462 -121 253 230 20 90 chr13 28088405 28088505 -73784664 + L2 LINE L2 3221 3313 0 456 129 82 0 chr13 28088574 28088659 -73784510 - L1MB7 LINE L1 -15 6169 6078 246 325 12 0 chr13 28089153 28089233 -73783936 - L2 LINE L2 -6 3307 3227 209 317 69 41 chr13 28089395 28089540 -73783629 - L2 LINE L2 -213 3059 2911 276 320 111 12 chr13 28089631 28089803 -73783366 - L2 LINE L2 -572 2742 2554 229 120 40 20 chr13 28089830 28089880 -73783289 + A-rich Low_complexity Low_complexity 3 53 0 273 119 0 0 chr13 28089932 28089974 -73783195 + (ATG)n Simple_repeat Simple_repeat 1 42 0 603 225 23 0 chr13 28089981 28090110 -73783059 - MIR SINE MIR -42 220 89 181 294 0 0 chr13 28090159 28090210 -73782959 - L2 LINE L2 -942 2372 2322 1347 114 19 215 chr13 28090279 28090683 -73782486 - AluJb SINE Alu 0 330 1 464 353 29 10 chr13 28090731 28090938 -73782231 - L3 LINE CR1 -1131 446 236 1848 152 0 0 chr13 28091345 28091675 -73781494 + AluSx SINE Alu 1 330 0 267 288 15 0 chr13 28091851 28091917 -73781252 + MIR3 SINE MIR 136 202 -6 1351 159 32 62 chr13 28092221 28092529 -73780640 - AluJo SINE Alu -13 299 1 23 54 0 0 chr13 28092770 28092807 -73780362 + AT_rich Low_complexity Low_complexity 1 37 0 1937 96 4 0 chr13 28092807 28093078 -73780091 + AluSq SINE Alu 1 272 -41 2256 49 0 3 chr13 28093080 28093365 -73779804 + AluY SINE Alu 17 300 -11 227 30 0 30 chr13 28093563 28093596 -73779573 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 661 0 0 0 chr13 28094238 28094311 -73778858 - tRNA-Glu-GAA tRNA tRNA -2 73 1 300 253 99 0 chr13 28094473 28094564 -73778605 + L2 LINE L2 2130 2229 -1085 2130 103 0 13 chr13 28095498 28095808 -73777361 + AluSx SINE Alu 1 306 -6 218 221 273 0 chr13 28095857 28095934 -73777235 - MIR SINE MIR -29 233 136 1565 150 15 11 chr13 28096347 28096621 -73776548 - AluJb SINE Alu -9 303 29 894 213 40 0 chr13 28096742 28096916 -73776253 - MER63A DNA MER1_type -2 208 28 2074 117 0 0 chr13 28097058 28097356 -73775813 + AluSx SINE Alu 1 298 -14 359 233 157 57 chr13 28097538 28097697 -73775472 + MER5A DNA MER1_type 15 189 0 209 294 111 46 chr13 28097715 28097868 -73775301 + L2 LINE L2 2658 2820 -494 296 292 52 0 chr13 28098188 28098284 -73774885 - L3b LINE CR1 -144 1439 1339 382 284 47 54 chr13 28099011 28099159 -73774010 + L2 LINE L2 3107 3253 -19 489 235 25 0 chr13 28099160 28099279 -73773890 - MIR SINE MIR -51 211 90 28 48 0 0 chr13 28099310 28099352 -73773817 + AT_rich Low_complexity Low_complexity 1 42 0 1052 232 30 3 chr13 28100251 28100491 -73772678 - MIR SINE MIR 0 262 22 1681 271 124 27 chr13 28100975 28101894 -73771275 + L2 LINE L2 2294 3313 0 2505 175 49 68 chr13 28102605 28102898 -73770271 - MER89 LTR ERV1 0 559 262 1785 137 11 4 chr13 28102898 28103169 -73770000 + AluSx SINE Alu 1 273 -39 2258 84 0 3 chr13 28103179 28103476 -73769693 + AluSx SINE Alu 1 296 -16 2505 175 49 68 chr13 28103476 28103741 -73769428 - MER89 LTR ERV1 -306 253 1 1955 96 7 3 chr13 28103972 28104277 -73768892 + AluSx SINE Alu 1 306 0 2059 123 0 10 chr13 28105108 28105416 -73767753 + AluSq SINE Alu 1 305 -8 2199 100 3 6 chr13 28105645 28105956 -73767213 + AluSg SINE Alu 1 310 0 385 191 85 0 chr13 28106575 28106669 -73766500 + LTR50 LTR ERVL 57 158 -637 895 201 241 74 chr13 28106718 28106989 -73766180 + LTR50 LTR ERVL 292 517 -278 1984 123 3 0 chr13 28106989 28107289 -73765880 - AluSx SINE Alu -6 306 6 895 201 241 74 chr13 28107289 28107449 -73765720 + LTR50 LTR ERVL 517 795 0 1476 220 115 5 chr13 28107670 28108043 -73765126 - LTR40b LTR ERVL -47 415 2 1959 122 7 7 chr13 28108256 28108551 -73764618 - AluSx SINE Alu -12 300 6 189 184 0 53 chr13 28108967 28109005 -73764164 + MIR SINE MIR 220 255 -7 423 306 157 34 chr13 28109162 28109571 -73763598 - L2 LINE L2 -3 3310 2852 803 193 7 0 chr13 28109870 28110015 -73763154 + MER5A DNA MER1_type 1 146 -43 369 248 188 27 chr13 28110065 28110214 -73762955 + MER5A DNA MER1_type 17 189 0 2028 120 0 3 chr13 28110662 28110971 -73762198 - AluSx SINE Alu 0 308 1 235 206 103 41 chr13 28111933 28112079 -73761090 + L1P LINE L1 5270 5424 -742 442 220 209 98 chr13 28112541 28112900 -73760269 - LTR37B LTR ERV1 -1 467 69 1167 174 14 0 chr13 28112915 28113122 -73760047 - AluSg/x SINE Alu -4 308 99 1371 130 30 0 chr13 28113144 28113344 -73759825 + MER1B DNA MER1_type 133 338 -1 2182 116 0 0 chr13 28113612 28113914 -73759255 + AluSx SINE Alu 5 306 -6 2168 100 37 0 chr13 28113941 28114241 -73758928 + AluSp SINE Alu 1 311 -2 327 330 15 74 chr13 28114249 28114300 -73758869 + L1MEd LINE L1 1148 1200 -5172 1699 134 3 55 chr13 28114300 28114607 -73758562 + AluJo SINE Alu 6 296 -16 327 330 15 74 chr13 28114607 28114758 -73758411 + L1MEd LINE L1 1200 1338 -5034 24 32 0 0 chr13 28114783 28114814 -73758355 + AT_rich Low_complexity Low_complexity 1 31 0 426 252 59 51 chr13 28114844 28115098 -73758071 + HAL1 LINE L1 1331 1586 -921 312 318 60 42 chr13 28115398 28115615 -73757554 + L1MEd LINE L1 2188 2408 -3976 2573 53 0 0 chr13 28117822 28118125 -73755044 - AluY SINE Alu -8 303 1 1265 104 0 0 chr13 28118224 28118387 -73754782 - AluSp SINE Alu -17 296 134 1130 144 39 11 chr13 28119119 28119300 -73753869 + AluJo SINE Alu 117 302 -10 237 33 0 0 chr13 28119660 28119690 -73753479 + (CA)n Simple_repeat Simple_repeat 2 31 0 218 54 0 27 chr13 28120000 28120037 -73753132 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 778 241 93 12 chr13 28120230 28120562 -73752607 + L1MEd LINE L1 1899 2257 -4306 3080 245 109 14 chr13 28120567 28122034 -73751135 + L1MEd LINE L1 2514 4131 -2251 710 153 69 28 chr13 28122250 28122394 -73750775 + MIR SINE MIR 3 152 -110 212 260 192 29 chr13 28123511 28123547 -73749622 + MIR3 SINE MIR 63 92 -116 2383 105 0 0 chr13 28123547 28123851 -73749318 - AluSx SINE Alu -8 304 1 212 260 192 29 chr13 28123851 28123918 -73749251 + MIR3 SINE MIR 92 183 -25 2187 118 10 0 chr13 28124449 28124754 -73748415 - AluSx SINE Alu -4 308 1 191 250 18 89 chr13 28125195 28125307 -73747862 + MIR SINE MIR 120 223 -39 2811 0 0 0 chr13 28125512 28125813 -73747356 - AluYa5 SINE Alu -10 301 1 1965 147 0 7 chr13 28126668 28126960 -73746209 - AluSx SINE Alu -22 290 1 206 308 69 54 chr13 28127676 28127806 -73745363 - MIR SINE MIR -129 133 2 270 217 50 0 chr13 28127885 28127945 -73745224 + L2 LINE L2 1732 1794 -1520 2025 136 18 0 chr13 28127955 28128285 -73744884 - Tigger1 DNA MER2_type -4 2414 2079 356 287 98 37 chr13 28128285 28128449 -73744720 + L2 LINE L2 2955 3128 -185 1896 128 82 0 chr13 28128455 28128737 -73744432 - AluSx SINE Alu -7 305 1 4080 161 120 94 chr13 28128888 28129452 -73743717 - L1MD3 LINE L1 -8 7987 7439 552 170 45 0 chr13 28129452 28129564 -73743605 - MLT1F1 LTR MaLR -445 122 6 4080 161 120 94 chr13 28129564 28130138 -73743031 - L1MD3 LINE L1 -556 7439 6705 207 0 0 0 chr13 28130324 28130347 -73742822 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1332 118 53 44 chr13 28132044 28132174 -73740995 + MER30 DNA MER1_type 1 135 -95 2593 30 7 3 chr13 28132174 28132478 -73740691 + AluY SINE Alu 1 305 -6 1332 118 53 44 chr13 28132478 28132575 -73740594 + MER30 DNA MER1_type 135 230 0 2905 137 28 54 chr13 28132656 28133197 -73739972 - MER1A DNA MER1_type 0 527 1 43 35 0 0 chr13 28133328 28133385 -73739784 + AT_rich Low_complexity Low_complexity 1 57 0 2252 128 0 0 chr13 28133520 28133826 -73739343 - AluSq SINE Alu -7 306 1 191 309 18 0 chr13 28134489 28134544 -73738625 + MIR SINE MIR 34 89 -173 341 127 0 0 chr13 28134556 28134611 -73738558 + MADE1 DNA Mariner 1 55 -25 240 296 207 7 chr13 28134612 28134747 -73738422 + MIR SINE MIR 101 262 0 213 301 98 16 chr13 28134766 28134889 -73738280 - L3 LINE CR1 -767 810 678 260 256 25 25 chr13 28136112 28136233 -73736936 + MER104 DNA Tc2 11 131 -49 2334 119 0 0 chr13 28136234 28136544 -73736625 - AluSg SINE Alu 0 310 1 2182 104 7 0 chr13 28136592 28136881 -73736288 - AluSx SINE Alu -21 291 1 1865 142 51 3 chr13 28137095 28137391 -73735778 + AluSq SINE Alu 1 310 -3 203 278 211 50 chr13 28137608 28137788 -73735381 + MIR SINE MIR 48 256 -6 438 200 69 38 chr13 28138450 28138610 -73734559 + L1MEc LINE L1 2230 2394 -4002 * 485 242 45 0 chr13 28138607 28138764 -73734405 - L1M4 LINE L1 -1236 4910 4747 2750 179 78 0 chr13 28138801 28139355 -73733814 + MER7C DNA MER2_type 1 597 -5 726 236 97 42 chr13 28139452 28140112 -73733057 - L1M4 LINE L1 -1576 4570 3712 673 255 5 15 chr13 28140123 28140327 -73732842 - L1M4 LINE L1 -3651 2495 2294 481 270 65 32 chr13 28140326 28140604 -73732565 + L1ME1 LINE L1 4906 5192 -954 * 2417 261 43 23 chr13 28140603 28141319 -73731850 + L1MEc LINE L1 37 771 -5625 2188 110 44 41 chr13 28141319 28141682 -73731487 + THE1B LTR MaLR 1 364 0 2417 261 43 23 chr13 28141682 28141739 -73731430 + L1MEc LINE L1 771 825 -5571 2011 90 4 0 chr13 28141752 28142044 -73731125 + AluY SINE Alu 25 317 0 279 234 85 43 chr13 28142416 28142510 -73730659 + MER5C DNA MER1_type 1 98 -226 2284 119 0 0 chr13 28142619 28142929 -73730240 - AluSx SINE Alu -2 310 1 2089 116 3 14 chr13 28143013 28143330 -73729839 + AluSx SINE Alu 8 312 0 1922 103 84 4 chr13 28143564 28143837 -73729332 + AluSg SINE Alu 1 295 -15 432 241 171 5 chr13 28144738 28144925 -73728244 + L3b LINE CR1 1117 1334 -249 210 260 179 32 chr13 28145149 28145272 -73727897 + L3b LINE CR1 1326 1466 -117 2185 118 7 3 chr13 28146984 28147290 -73725879 - AluSx SINE Alu -5 307 1 2021 200 77 23 chr13 28148407 28148963 -73724206 + L1ME1 LINE L1 5572 6157 -9 191 339 0 0 chr13 28150802 28150861 -73722308 - L2 LINE L2 -2506 808 750 1144 189 9 9 chr13 28150863 28151080 -73722089 - AluJo SINE Alu -9 303 87 809 326 117 30 chr13 28151300 28152000 -73721169 + L2 LINE L2 1927 2687 -627 631 188 8 34 chr13 28152597 28152858 -73720311 + GA-rich Low_complexity Low_complexity 1 253 0 1373 139 175 75 chr13 28152993 28153381 -73719788 - MSTC LTR MaLR -1 427 1 230 263 0 0 chr13 28153482 28153539 -73719630 - L2 LINE L2 -5 3308 3252 2071 125 14 0 chr13 28154081 28154368 -73718801 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr13 28156002 28156023 -73717146 + AT_rich Low_complexity Low_complexity 1 21 0 1097 125 60 10 chr13 28157500 28157700 -73715469 + Tigger2 DNA MER2_type 1 210 -2508 729 179 97 0 chr13 28157706 28157840 -73715329 + Tigger2 DNA MER2_type 2571 2717 -1 2212 108 3 3 chr13 28157844 28158149 -73715020 + AluSx SINE Alu 1 305 -7 29 0 0 0 chr13 28158506 28158535 -73714634 + AT_rich Low_complexity Low_complexity 1 29 0 1774 187 0 3 chr13 28159039 28159322 -73713847 + AluJo SINE Alu 1 282 -30 750 160 8 0 chr13 28159342 28159467 -73713702 - FLAM_C SINE Alu -6 127 2 1468 117 5 31 chr13 28159482 28159704 -73713465 - AluSq SINE Alu -12 301 86 313 68 0 0 chr13 28159805 28159849 -73713320 + Alu SINE Alu 244 287 -15 727 197 111 20 chr13 28159860 28160058 -73713111 + MSTD LTR MaLR 181 396 0 2076 150 0 3 chr13 28160406 28160719 -73712450 + AluSx SINE Alu 1 312 0 2776 58 0 0 chr13 28160757 28161102 -73712067 - L1PA3 LINE L1 -1 6154 5810 1064 238 91 9 chr13 28161150 28161469 -73711700 + L2 LINE L2 2193 2537 -777 3072 155 68 4 chr13 28161470 28162018 -73711151 + Tigger1 DNA MER2_type 2 584 -1834 744 222 14 0 chr13 28162022 28162166 -73711003 - FRAM SINE Alu -29 147 2 2696 97 11 36 chr13 28162199 28162457 -73710712 + Tigger1 DNA MER2_type 1495 1739 -679 2346 79 0 7 chr13 28162457 28162762 -73710407 + AluY SINE Alu 1 303 -8 2696 97 11 36 chr13 28162762 28162947 -73710222 + Tigger1 DNA MER2_type 1739 1927 -491 1194 154 13 60 chr13 28162947 28163143 -73710026 - AluJo SINE Alu -89 223 38 2131 118 16 10 chr13 28163143 28163449 -73709720 + AluSq SINE Alu 1 308 -5 1194 154 13 60 chr13 28163449 28163486 -73709683 - AluJo SINE Alu -274 38 1 635 118 77 186 chr13 28163486 28163707 -73709462 + Tigger1 DNA MER2_type 2220 2416 -2 1042 245 151 22 chr13 28163710 28164186 -73708983 + L2 LINE L2 2537 3128 -185 1780 106 0 109 chr13 28164186 28164525 -73708644 + AluSg1 SINE Alu 1 302 -7 1042 245 151 22 chr13 28164525 28164733 -73708436 + L2 LINE L2 3128 3308 -5 275 68 0 0 chr13 28164773 28164817 -73708352 + Tigger1 DNA MER2_type 1884 1927 -491 677 153 24 8 chr13 28164817 28164941 -73708228 - AluJo SINE Alu -89 223 98 254 316 223 14 chr13 28166005 28166220 -73706949 - MIR SINE MIR -1 261 2 299 280 42 109 chr13 28166402 28166595 -73706574 + L2 LINE L2 2986 3165 -107 2167 100 7 3 chr13 28166855 28167155 -73706014 + AluSx SINE Alu 1 301 -11 2482 67 0 0 chr13 28167215 28167512 -73705657 + AluSc SINE Alu 1 297 -12 1205 231 184 37 chr13 28167791 28168837 -73704332 - L1ME3A LINE L1 -168 6002 4809 * 3902 135 40 34 chr13 28168831 28169402 -73703767 - L1MB3 LINE L1 -8 6175 5596 1611 105 23 139 chr13 28169402 28169746 -73703423 + AluYb8 SINE Alu 1 304 -14 3902 135 40 34 chr13 28169746 28169987 -73703182 - L1MB3 LINE L1 -587 5596 5358 1935 134 67 0 chr13 28170003 28170287 -73702882 + AluJo SINE Alu 1 303 -9 1588 56 15 10 chr13 28170349 28170546 -73702623 + AluSp SINE Alu 1 198 -115 220 378 73 7 chr13 28170552 28170703 -73702466 + L2 LINE L2 2882 3042 -230 2360 82 7 0 chr13 28170904 28171198 -73701971 - AluSp SINE Alu -15 298 3 212 353 63 19 chr13 28171205 28171218 -73701951 + L2 LINE L2 1988 1999 -1315 306 0 0 0 chr13 28171218 28171252 -73701917 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 353 63 19 chr13 28171252 28171445 -73701724 + L2 LINE L2 1999 2203 -1111 481 204 0 0 chr13 28171653 28171741 -73701428 - MER81 DNA DNA -26 88 1 416 222 205 0 chr13 28171757 28171874 -73701295 - MER5A DNA MER1_type 0 189 49 189 94 0 0 chr13 28171874 28171906 -73701263 + (CTG)n Simple_repeat Simple_repeat 3 34 0 259 295 131 25 chr13 28171964 28172086 -73701083 + L2 LINE L2 3160 3294 -19 2035 165 0 0 chr13 28172121 28172418 -73700751 + AluJo SINE Alu 1 297 -15 418 329 231 20 chr13 28172670 28173613 -73699556 + L2 LINE L2 1024 3053 -219 308 95 0 0 chr13 28173687 28173729 -73699440 - Cheshire DNA MER1_type -2 2418 2377 302 135 0 122 chr13 28173826 28173900 -73699269 - MER2 DNA MER2_type -280 65 1 1097 195 60 8 chr13 28173910 28174177 -73698992 - Cheshire DNA MER1_type -54 2366 2086 2323 101 0 0 chr13 28174503 28174799 -73698370 - AluSc SINE Alu -13 296 1 1417 186 18 46 chr13 28175058 28175338 -73697831 + AluJo SINE Alu 3 274 -38 207 139 0 0 chr13 28175338 28175374 -73697795 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 25 31 0 0 chr13 28175440 28175472 -73697697 + AT_rich Low_complexity Low_complexity 1 32 0 2514 93 14 3 chr13 28175947 28176311 -73696858 + THE1C LTR MaLR 8 375 0 548 306 49 55 chr13 28176311 28176599 -73696570 + L2 LINE L2 2264 2551 -763 2325 102 3 0 chr13 28176599 28176902 -73696267 - AluSx SINE Alu -8 304 1 548 306 49 55 chr13 28176902 28176960 -73696209 + L2 LINE L2 2551 2608 -706 2010 160 6 3 chr13 28177071 28177389 -73695780 + 7SLRNA srpRNA srpRNA 1 319 -1 1033 224 32 5 chr13 28177431 28177650 -73695519 - MIR SINE MIR -7 255 31 438 247 238 23 chr13 28177626 28177951 -73695218 + L2 LINE L2 2772 3177 -136 * 875 282 62 0 chr13 28178014 28178255 -73694914 + MIR SINE MIR 7 262 0 318 329 41 41 chr13 28178318 28178464 -73694705 + MER5A DNA MER1_type 41 186 -3 216 86 0 0 chr13 28178862 28178897 -73694272 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1571 172 0 34 chr13 28179578 28179874 -73693295 - AluJb SINE Alu -21 291 6 2239 137 0 3 chr13 28180010 28180323 -73692846 - AluSx SINE Alu 0 312 1 2316 101 0 3 chr13 28180666 28180972 -73692197 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr13 28181045 28181066 -73692103 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 28181144 28181169 -73692000 + (ATG)n Simple_repeat Simple_repeat 1 25 0 242 282 56 28 chr13 28181519 28181590 -73691579 - MIR SINE MIR -115 93 21 258 314 27 96 chr13 28181623 28181811 -73691358 + MIR SINE MIR 82 256 -6 525 190 127 7 chr13 28182017 28182159 -73691010 + MER58C DNA MER1_type 56 214 -1 30 27 0 0 chr13 28182793 28182830 -73690339 + AT_rich Low_complexity Low_complexity 1 37 0 286 330 32 21 chr13 28182920 28183014 -73690155 + MIR3 SINE MIR 4 98 -110 358 366 119 8 chr13 28184304 28184539 -73688630 - MIR SINE MIR 0 262 2 216 260 0 0 chr13 28184676 28184726 -73688443 - L2 LINE L2 0 3313 3264 1026 270 162 42 chr13 28184741 28185471 -73687698 + L2 LINE L2 2497 3313 0 264 356 64 75 chr13 28185466 28185626 -73687543 - L2 LINE L2 -76 3196 3036 * 1967 134 10 3 chr13 28185626 28185933 -73687236 + AluJo SINE Alu 1 309 -3 264 356 64 75 chr13 28185933 28186148 -73687021 - L2 LINE L2 -236 3036 2825 294 225 42 0 chr13 28186193 28186264 -73686905 + MIR SINE MIR 119 192 -70 2618 75 21 16 chr13 28186273 28186646 -73686523 - THE1C LTR MaLR 0 375 1 534 334 60 63 chr13 28186796 28187227 -73685942 + L1MEd LINE L1 12 441 -5678 279 228 19 152 chr13 28187228 28187439 -73685730 + L1MC4 LINE L1 7860 8042 0 255 277 96 11 chr13 28187797 28187891 -73685278 - MIR SINE MIR -2 260 159 445 274 59 113 chr13 28188015 28188423 -73684746 - MLT1L LTR MaLR -62 553 168 349 313 0 10 chr13 28188612 28188711 -73684458 - MIR SINE MIR -99 163 66 216 301 36 12 chr13 28189392 28189475 -73683694 + MIR SINE MIR 111 195 -67 426 302 62 17 chr13 28190724 28190903 -73682266 - MIR SINE MIR -70 192 6 2318 98 0 3 chr13 28191093 28191399 -73681770 + AluSx SINE Alu 1 305 -7 1539 134 90 60 chr13 28191555 28191854 -73681315 - AluJo SINE Alu -4 308 1 2480 71 0 0 chr13 28193040 28193334 -73679835 + AluY SINE Alu 3 296 -15 951 128 0 0 chr13 28193805 28194083 -73679086 + (TA)n Simple_repeat Simple_repeat 1 278 0 1984 132 3 3 chr13 28194083 28194370 -73678799 - AluSx SINE Alu -25 287 1 408 225 0 110 chr13 28194373 28194574 -73678595 - L1 LINE L1 -1817 4329 4151 2270 100 13 0 chr13 28194802 28195102 -73678067 - AluSx SINE Alu -7 305 2 21 0 0 0 chr13 28195178 28195199 -73677970 + AT_rich Low_complexity Low_complexity 1 21 0 783 182 0 0 chr13 28195377 28195498 -73677671 + FLAM_A SINE Alu 1 121 -12 630 247 133 0 chr13 28196426 28196576 -73676593 + FRAM SINE Alu 1 170 -6 409 164 35 17 chr13 28196613 28196729 -73676440 + L1M4 LINE L1 2894 3011 -3135 1159 228 101 68 chr13 28196793 28197349 -73675820 + L1ME2 LINE L1 5581 6154 -10 1518 180 3 40 chr13 28197672 28197972 -73675197 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr13 28197973 28197995 -73675174 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 28198146 28198171 -73674998 + AT_rich Low_complexity Low_complexity 1 25 0 202 318 35 12 chr13 28198918 28199003 -73674166 - MER5A DNA MER1_type -42 147 61 549 0 0 0 chr13 28199069 28199130 -73674039 + (TG)n Simple_repeat Simple_repeat 2 62 0 423 0 0 0 chr13 28199184 28199231 -73673938 + (TG)n Simple_repeat Simple_repeat 2 48 0 2048 121 3 17 chr13 28199231 28199520 -73673649 - AluSx SINE Alu -27 285 1 1947 106 39 3 chr13 28199568 28199850 -73673319 + AluSg SINE Alu 1 292 -18 645 237 46 62 chr13 28199866 28199948 -73673221 - Charlie2a DNA MER1_type -611 2251 2169 794 106 0 0 chr13 28199948 28200061 -73673108 + L1PB3 LINE L1 6040 6152 -2 645 237 46 62 chr13 28200061 28200303 -73672866 - Charlie2a DNA MER1_type -693 2169 1932 229 247 67 45 chr13 28200345 28200434 -73672735 + MIR SINE MIR 124 214 -48 * 379 278 57 52 chr13 28200424 28200636 -73672533 - MIR SINE MIR -2 260 48 2364 81 7 0 chr13 28200695 28200991 -73672178 - AluSp SINE Alu -15 298 1 691 191 391 14 chr13 28201038 28201383 -73671786 - Charlie2a DNA MER1_type -915 1947 1473 1077 257 74 33 chr13 28201419 28202031 -73671138 - Charlie2b DNA MER1_type -2116 666 1 28 29 0 0 chr13 28203021 28203056 -73670113 + AT_rich Low_complexity Low_complexity 1 35 0 1806 159 28 10 chr13 28203403 28203693 -73669476 + AluJo SINE Alu 1 295 -17 2208 102 0 35 chr13 28203698 28204012 -73669157 + AluSx SINE Alu 10 312 0 22 56 0 0 chr13 28204697 28204733 -73668436 + AT_rich Low_complexity Low_complexity 1 36 0 2152 117 0 19 chr13 28205288 28205605 -73667564 - AluSx SINE Alu -1 311 1 2286 102 0 0 chr13 28205795 28206107 -73667062 + AluSq SINE Alu 1 312 0 1836 68 4 8 chr13 28207454 28207689 -73665480 + AluSx SINE Alu 64 297 -15 189 0 0 0 chr13 28208588 28208609 -73664560 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 405 255 122 0 chr13 28208771 28208869 -73664300 - L2 LINE L2 -1 3271 3162 406 277 164 38 chr13 28208875 28209222 -73663947 - L2 LINE L2 -49 3264 2874 209 344 0 16 chr13 28209281 28209342 -73663827 - L2 LINE L2 -182 3090 3031 1771 87 4 0 chr13 28209360 28209590 -73663579 - AluSg/x SINE Alu 0 312 82 2532 46 0 0 chr13 28209590 28209891 -73663278 - AluY SINE Alu -9 302 1 520 314 51 11 chr13 28210336 28210511 -73662658 + MER5A DNA MER1_type 8 189 0 747 183 0 8 chr13 28210521 28210652 -73662517 + AluJb SINE Alu 4 133 -179 1783 150 6 38 chr13 28211298 28211618 -73661551 + AluJo SINE Alu 1 310 -2 180 250 54 18 chr13 28212065 28212121 -73661048 - L3 LINE CR1 -586 991 934 357 179 40 168 chr13 28212583 28213057 -73660112 - MER5A DNA MER1_type 0 189 39 1985 146 17 7 chr13 28212663 28212965 -73660204 - AluSx SINE Alu -7 305 1 322 194 59 182 chr13 28212965 28213079 -73660090 + MER5A DNA MER1_type 97 185 -4 492 206 11 0 chr13 28213247 28213339 -73659830 + LTR67 LTR ERVL 92 184 -373 389 329 81 14 chr13 28213628 28213838 -73659331 + MIR SINE MIR 5 228 -34 320 195 23 46 chr13 28213945 28214020 -73659149 - MLT1K LTR MaLR -11 577 503 1458 153 71 46 chr13 28214020 28214163 -73659006 + AluJo SINE Alu 1 139 -173 2366 90 3 0 chr13 28214163 28214473 -73658696 + AluY SINE Alu 1 311 0 1458 153 71 46 chr13 28214473 28214610 -73658559 + AluJo SINE Alu 139 288 -24 320 195 23 46 chr13 28214610 28214621 -73658548 - MLT1K LTR MaLR -85 503 493 189 232 0 0 chr13 28214637 28214706 -73658463 + A-rich Low_complexity Low_complexity 1 69 0 1184 302 58 14 chr13 28214713 28215196 -73657973 - MLT1K LTR MaLR -71 517 14 278 232 29 14 chr13 28215959 28216028 -73657141 - MLT1K LTR MaLR -505 83 14 2091 133 0 0 chr13 28216231 28216525 -73656644 + AluSx SINE Alu 1 294 -18 2128 124 7 3 chr13 28216841 28217140 -73656029 + AluSx SINE Alu 1 300 -12 200 268 207 0 chr13 28217230 28217312 -73655857 - L2 LINE L2 -10 3303 3205 1807 159 0 26 chr13 28217850 28218152 -73655017 + AluJb SINE Alu 1 294 -18 2033 116 7 0 chr13 28218870 28219146 -73654023 + AluSq SINE Alu 1 278 -35 207 0 0 0 chr13 28219152 28219175 -73653994 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 263 263 137 30 chr13 28219188 28219353 -73653816 + L1 LINE L1 4813 5009 -1137 1965 124 4 0 chr13 28219363 28219637 -73653532 - AluSx SINE Alu -29 283 9 2281 104 3 0 chr13 28219773 28220072 -73653097 + AluSp SINE Alu 6 305 -8 2156 110 31 0 chr13 28220339 28220629 -73652540 - AluSg SINE Alu -9 301 3 2505 47 0 13 chr13 28221518 28221817 -73651352 + AluY SINE Alu 2 296 -15 370 209 64 27 chr13 28223545 28223655 -73649514 + MIR SINE MIR 67 180 -82 1522 188 34 13 chr13 28223822 28224120 -73649049 + AluJb SINE Alu 1 304 -8 927 227 44 0 chr13 28224178 28224407 -73648762 - MIR SINE MIR -19 243 5 1909 100 55 11 chr13 28224756 28225063 -73648106 - AluSx SINE Alu 0 319 1 670 49 0 0 chr13 28225269 28225392 -73647777 - AluY SINE Alu 0 323 201 182 265 140 25 chr13 28225414 28225614 -73647555 + L2 LINE L2 1940 2162 -1152 2358 91 3 0 chr13 28226720 28227017 -73646152 - AluSx SINE Alu -14 298 1 214 167 48 0 chr13 28227020 28227062 -73646107 + MIR3 SINE MIR 154 197 -11 1829 156 7 13 chr13 28227809 28228111 -73645058 - AluJo SINE Alu -1 311 12 594 191 28 14 chr13 28228907 28229048 -73644121 - LTR67 LTR ERVL -13 544 402 769 122 122 47 chr13 28229432 28229457 -73643712 + MER53 DNA DNA 5 27 -162 2052 146 0 3 chr13 28229457 28229752 -73643417 + AluSx SINE Alu 1 294 -18 769 122 122 47 chr13 28229752 28229898 -73643271 + MER53 DNA DNA 27 189 0 269 290 109 36 chr13 28230824 28231017 -73642152 + L2 LINE L2 2885 3091 -181 445 243 171 43 chr13 28231100 28231310 -73641859 + MLT1J LTR MaLR 40 276 -235 1819 123 4 19 chr13 28231473 28231597 -73641572 - AluSx SINE Alu -56 256 132 2169 116 17 3 chr13 28231597 28231899 -73641270 - AluSq SINE Alu -7 306 1 1819 123 4 19 chr13 28231899 28232034 -73641135 - AluSx SINE Alu -180 132 1 1562 117 0 5 chr13 28232304 28232509 -73640660 - AluSx SINE Alu -108 204 1 2279 104 3 28 chr13 28232834 28232869 -73640300 - AluSx SINE Alu -2 310 276 216 0 0 0 chr13 28232869 28232893 -73640276 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2279 104 3 28 chr13 28232893 28233175 -73639994 - AluSx SINE Alu -36 276 1 2092 133 7 3 chr13 28233427 28233720 -73639449 + AluSx SINE Alu 1 294 -18 515 272 153 40 chr13 28233725 28234026 -73639143 - L1MC4a LINE L1 -1895 5913 5579 421 271 43 29 chr13 28234523 28234663 -73638506 - L2 LINE L2 0 3313 3172 2272 185 40 2 chr13 28234692 28235136 -73638033 - L1MB3 LINE L1 -3 6180 5720 1161 129 77 138 chr13 28235155 28235332 -73637837 + AluJo SINE Alu 1 152 -160 967 111 0 183 chr13 28235332 28235567 -73637602 + 7SK RNA RNA 2 193 0 1161 129 77 138 chr13 28235567 28235700 -73637469 + AluJo SINE Alu 152 292 -20 702 160 0 38 chr13 28235921 28236052 -73637117 + AluJo/FLAM SINE Alu 1 126 -176 1293 173 0 5 chr13 28236052 28236266 -73636903 + AluJb SINE Alu 88 300 -12 2181 119 10 3 chr13 28236516 28236826 -73636343 + AluSx SINE Alu 1 312 0 2482 66 13 0 chr13 28237064 28237366 -73635803 - AluY SINE Alu -5 306 1 1784 158 3 7 chr13 28237837 28238151 -73635018 - AluJb SINE Alu 0 313 1 554 220 8 0 chr13 28238510 28238628 -73634541 + FLAM_A SINE Alu 4 122 -11 458 272 18 78 chr13 28238768 28238841 -73634328 + L2 LINE L2 2236 2312 -1002 2302 92 0 0 chr13 28238841 28239168 -73634001 - AluSq SINE Alu 0 327 1 458 272 18 78 chr13 28239168 28239310 -73633859 + L2 LINE L2 2312 2439 -875 182 289 97 26 chr13 28239309 28239423 -73633746 + L2 LINE L2 2915 3036 -236 * 933 109 92 27 chr13 28239762 28239935 -73633234 + L1M3 LINE L1 5428 5615 -556 2374 84 0 3 chr13 28239935 28240232 -73632937 + AluY SINE Alu 1 296 -15 2041 142 0 0 chr13 28240307 28240603 -73632566 - AluSx SINE Alu -16 296 1 189 94 0 0 chr13 28240608 28240640 -73632529 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 488 72 14 0 chr13 28240640 28240709 -73632460 - MER41A LTR ERV1 -86 468 399 957 105 8 0 chr13 28240756 28240880 -73632289 - FLAM_C SINE Alu -16 127 3 1513 183 84 44 chr13 28240989 28241372 -73631797 + L1MC4 LINE L1 7475 7872 -170 283 164 206 0 chr13 28241493 28241566 -73631603 + L1MC4 LINE L1 7919 8006 -36 2081 153 0 3 chr13 28241566 28241874 -73631295 - AluJb SINE Alu -5 307 1 1780 167 10 22 chr13 28241975 28242287 -73630882 + AluJb SINE Alu 1 308 -4 445 93 13 0 chr13 28242393 28242468 -73630701 + AluSp/q SINE Alu 232 307 -6 246 311 58 0 chr13 28242567 28242670 -73630499 - LTR67 LTR ERVL -18 539 431 2213 109 3 3 chr13 28243093 28243386 -73629783 + AluSx SINE Alu 6 298 -14 328 177 4 4 chr13 28243392 28243464 -73629705 - Alu SINE Alu -253 49 1 2176 134 0 3 chr13 28243809 28244122 -73629047 - AluSx SINE Alu 0 312 1 892 146 28 7 chr13 28245145 28245289 -73627880 + FRAM SINE Alu 11 157 -19 2008 127 38 0 chr13 28245289 28245580 -73627589 + AluSx SINE Alu 1 302 -10 585 214 18 0 chr13 28245705 28245817 -73627352 + FLAM_A SINE Alu 2 115 -18 1605 147 114 0 chr13 28245817 28246089 -73627080 - AluJb SINE Alu -9 303 1 1006 185 19 38 chr13 28246089 28246300 -73626869 - AluJb SINE Alu -10 302 96 3613 201 33 64 chr13 28246400 28246580 -73626589 + L1ME1 LINE L1 4847 5031 -1303 2096 115 7 33 chr13 28246580 28246884 -73626285 + AluSx SINE Alu 1 296 -16 3613 201 33 64 chr13 28246884 28246966 -73626203 + L1ME1 LINE L1 5031 5114 -1220 1422 175 48 28 chr13 28246966 28247257 -73625912 - AluJo SINE Alu -15 297 1 3613 201 33 64 chr13 28247257 28247403 -73625766 + L1ME1 LINE L1 5114 5263 -1071 2455 93 0 6 chr13 28247403 28247715 -73625454 + AluSg SINE Alu 1 310 0 3613 201 33 64 chr13 28247715 28248329 -73624840 + L1ME1 LINE L1 5263 5964 -370 1240 156 107 52 chr13 28248329 28248618 -73624551 + AluJb SINE Alu 1 305 -7 3613 201 33 64 chr13 28248618 28248978 -73624191 + L1ME1 LINE L1 5964 6334 0 2225 123 0 0 chr13 28248994 28249286 -73623883 + AluSx SINE Alu 1 292 -20 1757 141 0 11 chr13 28250232 28250502 -73622667 - AluSx SINE Alu -45 267 1 268 214 22 11 chr13 28250504 28250573 -73622596 + (TTTA)n Simple_repeat Simple_repeat 1 68 -331 1830 142 4 4 chr13 28250573 28250840 -73622329 - AluJb SINE Alu -45 267 1 268 214 22 11 chr13 28250840 28250899 -73622270 + (TTTA)n Simple_repeat Simple_repeat 68 399 0 1240 180 43 31 chr13 28251673 28251928 -73621241 - MLT1A2 LTR MaLR -92 282 25 612 256 33 56 chr13 28251960 28252175 -73620994 + LTR16A LTR ERVL 229 438 -12 299 206 75 109 chr13 28252217 28252363 -73620806 - MIR SINE MIR -51 211 77 2210 141 0 0 chr13 28252363 28252675 -73620494 + AluSx SINE Alu 1 312 0 299 206 75 109 chr13 28252675 28252715 -73620454 - MIR SINE MIR -185 77 37 357 24 0 0 chr13 28253326 28253368 -73619801 + (CA)n Simple_repeat Simple_repeat 2 43 0 26 74 0 0 chr13 28253731 28253785 -73619384 + AT_rich Low_complexity Low_complexity 1 54 0 1753 85 0 5 chr13 28254256 28254480 -73618689 - AluSc SINE Alu -4 305 83 951 301 76 22 chr13 28254674 28255082 -73618087 + L2 LINE L2 2883 3312 -1 2645 50 0 0 chr13 28255112 28255411 -73617758 + AluY SINE Alu 1 299 -12 353 284 11 11 chr13 28255414 28255509 -73617660 - MER5A DNA MER1_type -80 109 15 1791 172 7 3 chr13 28255509 28255811 -73617358 - AluJb SINE Alu -9 303 1 1935 142 0 43 chr13 28255883 28256185 -73616984 - AluSx SINE Alu -23 289 1 1439 202 73 89 chr13 28256372 28257277 -73615892 - LTR28 LTR ERV1 0 1020 1 1898 159 10 3 chr13 28257299 28257588 -73615581 - AluSx SINE Alu -21 291 1 2935 136 39 53 chr13 28257600 28258143 -73615026 - MER4D LTR ERV1 -368 535 1 305 173 25 49 chr13 28258146 28258227 -73614942 - MER92C LTR ERV1 -274 280 202 903 152 0 0 chr13 28258302 28258434 -73614735 + AluSg/x SINE Alu 165 296 -16 2064 114 11 32 chr13 28258434 28258482 -73614687 + MER4B LTR ERV1 313 360 -250 1116 166 257 4 chr13 28258482 28258723 -73614446 - AluJo SINE Alu 0 302 1 2064 114 11 32 chr13 28258723 28258879 -73614290 + MER4B LTR ERV1 360 436 -174 2012 119 57 33 chr13 28258879 28259214 -73613955 - MER61A LTR ERV1 0 343 1 2064 114 11 32 chr13 28259214 28259386 -73613783 + MER4B LTR ERV1 436 610 0 756 221 133 29 chr13 28259386 28259610 -73613559 + MER92C LTR ERV1 280 528 -26 183 42 0 0 chr13 28259610 28259634 -73613535 + (GA)n Simple_repeat Simple_repeat 2 25 0 583 245 40 44 chr13 28259638 28259820 -73613349 - MLT1F1 LTR MaLR -401 189 4 243 0 0 0 chr13 28260189 28260216 -73612953 + (A)n Simple_repeat Simple_repeat 1 27 0 2375 74 0 0 chr13 28260638 28260945 -73612224 - AluSq SINE Alu 0 307 1 1264 84 0 0 chr13 28261535 28261690 -73611479 + AluSg/x SINE Alu 130 284 -26 750 189 31 70 chr13 28261986 28262214 -73610955 + L1MC5 LINE L1 7144 7362 -599 2058 131 0 22 chr13 28262223 28262535 -73610634 + AluSx SINE Alu 1 305 -7 2108 93 29 0 chr13 28262535 28262813 -73610356 + AluSx SINE Alu 1 286 -26 330 240 10 31 chr13 28262919 28263015 -73610154 + AluSg/x SINE Alu 208 301 -1 452 301 16 27 chr13 28263784 28263970 -73609199 - MER5A DNA MER1_type 0 189 6 2094 146 3 7 chr13 28264086 28264395 -73608774 + AluJb SINE Alu 1 308 -4 227 333 40 0 chr13 28264723 28264822 -73608347 + MIR SINE MIR 141 243 -19 206 139 28 0 chr13 28265128 28265164 -73608005 + (CA)n Simple_repeat Simple_repeat 2 38 0 913 127 0 8 chr13 28265410 28265544 -73607625 - FLAM_C SINE Alu 0 133 1 809 204 18 24 chr13 28265552 28265719 -73607450 - FRAM SINE Alu 0 166 1 236 309 25 12 chr13 28265928 28266009 -73607160 - L2 LINE L2 -5 3267 3186 260 0 0 0 chr13 28266013 28266045 -73607124 + L1MA9 LINE L1 6274 6305 -7 266 306 39 105 chr13 28266059 28266422 -73606747 - L2 LINE L2 -107 3165 2827 263 289 128 50 chr13 28268128 28268308 -73604861 + L2 LINE L2 3120 3313 0 2281 108 0 10 chr13 28268891 28269197 -73603972 + AluSg SINE Alu 1 303 -7 526 119 0 48 chr13 28269545 28269629 -73603540 + AluSg/x SINE Alu 212 291 -18 944 119 0 179 chr13 28269631 28269866 -73603303 + 7SK RNA RNA 1 193 0 1977 152 0 7 chr13 28269883 28270185 -73602984 + AluJo SINE Alu 1 300 -12 21 0 0 0 chr13 28270327 28270348 -73602821 + AT_rich Low_complexity Low_complexity 1 21 0 1038 75 8 0 chr13 28270676 28270810 -73602359 - AluSq SINE Alu -69 244 110 24 0 0 0 chr13 28271003 28271027 -73602142 + AT_rich Low_complexity Low_complexity 1 24 0 1469 162 0 0 chr13 28271085 28271314 -73601855 + AluSg SINE Alu 64 292 -18 1845 158 3 7 chr13 28271314 28271621 -73601548 - AluJo SINE Alu 0 307 2 2102 124 0 3 chr13 28271949 28272239 -73600930 - AluJb SINE Alu -23 289 1 838 270 146 39 chr13 28272401 28272880 -73600289 - L2 LINE L2 -49 3264 2744 877 264 80 8 chr13 28272891 28273130 -73600039 + MIR SINE MIR 2 257 -5 3401 248 52 22 chr13 28273136 28273700 -73599469 - L2 LINE L2 -568 2746 2140 1869 63 178 0 chr13 28273700 28273953 -73599216 + AluSp SINE Alu 1 298 -15 3401 248 52 22 chr13 28273953 28274353 -73598816 - L2 LINE L2 -1174 2140 1753 1864 168 27 0 chr13 28274353 28274651 -73598518 + AluJb SINE Alu 1 306 -6 605 249 102 23 chr13 28274672 28274849 -73598320 + MIR SINE MIR 35 225 -37 1374 272 43 26 chr13 28274857 28275320 -73597849 - MLT1E LTR MaLR 0 593 123 1434 242 117 82 chr13 28275337 28276019 -73597150 - L2 LINE L2 -1700 1614 909 414 248 19 73 chr13 28276026 28276232 -73596937 + LTR4 LTR ERV1 2 196 -400 782 227 25 35 chr13 28276407 28276689 -73596480 + LTR4 LTR ERV1 318 596 0 343 216 45 9 chr13 28276689 28276800 -73596369 - L2 LINE L2 -2401 913 799 584 303 192 2 chr13 28276884 28277306 -73595863 + MLT1K LTR MaLR 76 577 -11 346 297 216 0 chr13 28277475 28277660 -73595509 + MIR SINE MIR 3 227 -35 2144 128 0 3 chr13 28277683 28277979 -73595190 - AluSx SINE Alu -13 299 5 2033 88 81 0 chr13 28278014 28278287 -73594882 - AluSg SINE Alu -15 295 1 183 216 114 91 chr13 28278511 28278599 -73594570 - MIR SINE MIR 0 262 173 998 235 49 4 chr13 28278749 28278996 -73594173 + MIR SINE MIR 1 258 -4 260 324 39 0 chr13 28280060 28280162 -73593007 + L2 LINE L2 1803 1908 -1406 529 198 40 16 chr13 28280166 28280292 -73592877 - MLT1H LTR MaLR -2 547 419 545 229 78 42 chr13 28280362 28280554 -73592615 - MLT1H LTR MaLR -278 271 73 198 0 0 0 chr13 28280569 28280591 -73592578 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 713 97 29 0 chr13 28280592 28280695 -73592474 - U6 snRNA snRNA -1 106 1 1022 215 85 17 chr13 28280717 28281010 -73592159 + L2 LINE L2 1903 2215 -1099 1967 148 0 0 chr13 28281389 28281680 -73591489 - AluSx SINE Alu -21 291 1 854 262 55 61 chr13 28282200 28282543 -73590626 + L2 LINE L2 2946 3286 -27 1025 155 34 19 chr13 28282571 28282778 -73590391 + MER2 DNA MER2_type 1 210 -135 884 188 6 29 chr13 28282816 28282986 -73590183 - AluJo SINE Alu -146 166 1 309 258 0 0 chr13 28282995 28283061 -73590108 + MER2 DNA MER2_type 280 345 0 267 298 29 39 chr13 28283137 28283241 -73589928 + MIR SINE MIR 39 141 -67 234 343 0 29 chr13 28284277 28284382 -73588787 + MIR SINE MIR 111 212 -50 446 209 26 17 chr13 28284730 28284845 -73588324 - MER94 DNA DNA 0 134 19 2264 99 0 3 chr13 28285509 28285802 -73587367 - AluSx SINE Alu -20 292 1 790 320 84 36 chr13 28286129 28286520 -73586649 + L3 LINE CR1 845 1254 -323 519 236 174 0 chr13 28286663 28286807 -73586362 + MIR SINE MIR 2 170 -92 1956 158 0 3 chr13 28287306 28287598 -73585571 + AluSq SINE Alu 3 293 -20 2082 42 72 8 chr13 28287758 28288043 -73585126 - AluY SINE Alu 0 334 33 386 354 25 19 chr13 28288289 28288447 -73584722 + L3 LINE CR1 1009 1167 -410 1626 223 89 16 chr13 28288601 28289049 -73584120 - L1MC4 LINE L1 -1097 6945 6465 1797 187 0 10 chr13 28289548 28289853 -73583316 + AluJb SINE Alu 1 302 -10 366 222 10 10 chr13 28290846 28290945 -73582224 - Charlie8 DNA MER1_type -2223 194 96 245 217 33 0 chr13 28290980 28291040 -73582129 - MER103 DNA DNA -54 112 51 247 241 114 108 chr13 28291296 28291454 -73581715 + L2 LINE L2 3153 3311 -2 197 395 81 16 chr13 28291510 28291758 -73581411 + L2 LINE L2 2618 2881 -433 23 0 0 0 chr13 28292130 28292153 -73581016 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 28292312 28292338 -73580831 + AT_rich Low_complexity Low_complexity 1 26 0 1700 160 67 27 chr13 28292497 28292797 -73580372 + AluJb SINE Alu 1 312 0 279 280 91 23 chr13 28293864 28293996 -73579173 - L2 LINE L2 0 3313 3173 1094 123 0 0 chr13 28294031 28294177 -73578992 - AluSq/x SINE Alu -167 146 1 1984 152 15 0 chr13 28294315 28294650 -73578519 - L1PA16 LINE L1 -13 6153 5814 843 199 78 0 chr13 28294689 28294855 -73578314 - FAM SINE Alu -5 44 1 23 68 0 0 chr13 28294928 28294972 -73578197 + AT_rich Low_complexity Low_complexity 1 44 0 2393 86 3 0 chr13 28295245 28295548 -73577621 - AluSp SINE Alu -9 304 1 2423 42 3 29 chr13 28296345 28296651 -73576518 - AluY SINE Alu -13 298 1 191 190 52 17 chr13 28296900 28296958 -73576211 - L2 LINE L2 0 3313 3254 2271 116 3 0 chr13 28297033 28297336 -73575833 + AluSx SINE Alu 3 306 -6 352 271 181 8 chr13 28297963 28298096 -73575073 + MIR SINE MIR 107 262 0 816 142 47 0 chr13 28299307 28299434 -73573735 - FLAM_A SINE Alu 0 133 1 294 275 34 67 chr13 28299982 28300131 -73573038 - L2 LINE L2 -798 2516 2373 1248 263 77 40 chr13 28300191 28300895 -73572274 - L2 LINE L2 -1 3312 2567 1273 135 5 54 chr13 28300997 28301219 -73571950 - AluJo SINE Alu -101 211 1 2150 119 42 31 chr13 28301433 28301793 -73571376 + THE1B LTR MaLR 1 364 0 954 111 0 0 chr13 28302723 28302858 -73570311 - AluSx SINE Alu -9 303 169 342 68 232 4 chr13 28302868 28302937 -73570232 + AluSq/x SINE Alu 62 133 -170 1081 133 6 6 chr13 28302943 28303108 -73570061 - AluSx SINE Alu -147 165 1 231 175 0 0 chr13 28303414 28303454 -73569715 - Charlie1a DNA MER1_type -1 1454 1415 5055 196 43 29 chr13 28303485 28304702 -73568467 - Charlie1a DNA MER1_type -220 1235 2 2226 98 0 3 chr13 28304895 28305191 -73567978 + AluSq SINE Alu 1 295 -18 344 308 0 17 chr13 28305345 28305462 -73567707 - MIR SINE MIR -55 207 93 308 229 114 9 chr13 28306122 28306227 -73566942 - L1MC4 LINE L1 0 8042 7927 1566 102 0 5 chr13 28306673 28306888 -73566281 + AluSg/x SINE Alu 84 297 -13 24 32 0 0 chr13 28306935 28306966 -73566203 + AT_rich Low_complexity Low_complexity 1 31 0 1252 158 0 0 chr13 28307207 28307384 -73565785 + AluSx SINE Alu 1 177 -135 1575 135 9 0 chr13 28307402 28307632 -73565537 + AluSg/x SINE Alu 70 301 -11 1554 190 39 7 chr13 28307788 28308072 -73565097 + AluJb SINE Alu 1 293 -19 22 35 0 0 chr13 28308589 28308618 -73564551 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr13 28308646 28308668 -73564501 + (TA)n Simple_repeat Simple_repeat 2 23 0 457 186 0 0 chr13 28308668 28308738 -73564431 - AluS SINE Alu -17 294 225 625 216 22 89 chr13 28308939 28309139 -73564030 - L1MC5 LINE L1 -48 7913 7740 2454 87 0 0 chr13 28309139 28309448 -73563721 - AluSq SINE Alu -4 309 1 625 216 22 89 chr13 28309448 28309562 -73563607 - L1MC5 LINE L1 -221 7740 7620 1562 123 57 104 chr13 28310567 28310731 -73562438 - AluSx SINE Alu -10 302 159 2354 83 0 10 chr13 28310731 28311033 -73562136 - AluSc SINE Alu -10 299 1 1562 123 57 104 chr13 28311033 28311185 -73561984 - AluSx SINE Alu -153 159 1 37 0 0 0 chr13 28311531 28311568 -73561601 + AT_rich Low_complexity Low_complexity 1 37 0 735 112 9 0 chr13 28311799 28311906 -73561263 - AluSq/x SINE Alu -201 111 4 1565 139 57 60 chr13 28311912 28312280 -73560889 + MLT1B LTR MaLR 24 390 0 425 197 31 8 chr13 28312382 28312509 -73560660 - L1ME3A LINE L1 -5 6165 6036 23 33 0 0 chr13 28312739 28312769 -73560400 + AT_rich Low_complexity Low_complexity 1 30 0 1606 178 56 14 chr13 28312780 28313066 -73560103 - AluJo SINE Alu -14 298 1 2066 127 33 3 chr13 28313824 28314123 -73559046 - AluSx SINE Alu -4 308 1 2401 153 59 20 chr13 28314370 28315012 -73558157 - L1MB8 LINE L1 -9 6169 5413 2237 180 156 32 chr13 28315201 28315879 -73557290 - L1MB8 LINE L1 -845 5301 4540 3157 186 41 55 chr13 28315963 28316174 -73556995 - L1MD2 LINE L1 -1 6358 6145 243 0 0 0 chr13 28316174 28316201 -73556968 + (TG)n Simple_repeat Simple_repeat 2 28 0 3157 186 41 55 chr13 28316201 28316417 -73556752 - L1MD2 LINE L1 -214 6145 5927 2596 62 0 0 chr13 28316417 28316721 -73556448 - AluY SINE Alu -7 304 1 3157 186 41 55 chr13 28316721 28317104 -73556065 - L1MD2 LINE L1 -432 5927 5559 228 122 0 0 chr13 28317686 28317727 -73555442 + (CA)n Simple_repeat Simple_repeat 2 42 0 2198 100 3 7 chr13 28320096 28320395 -73552774 + L1PA12 LINE L1 5871 6168 0 21 71 0 0 chr13 28320487 28320529 -73552640 + AT_rich Low_complexity Low_complexity 1 42 0 208 323 0 16 chr13 28320532 28320594 -73552575 + L2 LINE L2 3248 3308 -5 1599 178 7 26 chr13 28322195 28322558 -73550611 - AluJb SINE Alu 0 357 1 1471 154 12 20 chr13 28322635 28322881 -73550288 + AluJo SINE Alu 1 244 -68 22 0 0 0 chr13 28322890 28322912 -73550257 + AT_rich Low_complexity Low_complexity 1 22 0 294 360 10 0 chr13 28322977 28323077 -73550092 - MIR SINE MIR -150 112 12 659 195 8 16 chr13 28323106 28323234 -73549935 + FLAM_A SINE Alu 4 130 -3 2604 195 21 87 chr13 28323356 28323758 -73549411 - MLT1E3 LTR MaLR 0 624 280 2374 111 0 0 chr13 28323758 28324065 -73549104 - AluSx SINE Alu -5 307 1 2604 195 21 87 chr13 28324065 28324314 -73548855 - MLT1E3 LTR MaLR -344 280 16 227 54 27 0 chr13 28325105 28325142 -73548027 + (TA)n Simple_repeat Simple_repeat 2 39 0 651 141 0 0 chr13 28325156 28325255 -73547914 + L1P5 LINE L1 5705 5803 -353 369 186 58 12 chr13 28325235 28325321 -73547848 + L1M4 LINE L1 3362 3451 -2695 * 744 221 15 36 chr13 28326123 28326318 -73546851 - L1MC5 LINE L1 -44 7917 7727 552 187 0 22 chr13 28326333 28326424 -73546745 + AluJ/FLAM SINE Alu 3 91 -221 1896 130 42 3 chr13 28326570 28326854 -73546315 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr13 28329000 28329022 -73544147 + AT_rich Low_complexity Low_complexity 1 22 0 45 104 0 0 chr13 28329199 28329363 -73543806 + AT_rich Low_complexity Low_complexity 1 164 0 35 63 0 0 chr13 28329544 28329607 -73543562 + AT_rich Low_complexity Low_complexity 1 63 0 883 272 91 33 chr13 28329765 28330356 -73542813 - L1ME LINE L1 -539 5903 5256 2015 133 9 19 chr13 28330356 28330671 -73542498 - AluSx SINE Alu 0 312 1 883 272 91 33 chr13 28330671 28330880 -73542289 - L1ME LINE L1 -1186 5256 5061 3015 165 17 4 chr13 28330924 28331398 -73541771 + Tigger7 DNA MER2_type 32 511 -222 615 276 111 42 chr13 28331461 28332087 -73541082 - L1MEd LINE L1 -4859 1567 1015 1116 225 65 98 chr13 28332323 28332781 -73540388 - MLT1H LTR MaLR -23 526 84 366 267 23 30 chr13 28332924 28333055 -73540114 + MER94 DNA DNA 5 134 0 277 281 134 61 chr13 28333421 28333898 -73539271 - HAL1b LINE L1 -252 1096 585 34 42 0 0 chr13 28334271 28334319 -73538850 + AT_rich Low_complexity Low_complexity 1 48 0 859 144 7 7 chr13 28334463 28334602 -73538567 + AluJb SINE Alu 3 141 -171 33 66 0 0 chr13 28335009 28335070 -73538099 + AT_rich Low_complexity Low_complexity 1 61 0 1274 133 225 4 chr13 28335741 28335981 -73537188 - AluSg1 SINE Alu -16 293 1 386 254 231 8 chr13 28336691 28336825 -73536344 + MIR SINE MIR 2 165 -97 854 268 131 40 chr13 28336850 28337279 -73535890 - MLT1J LTR MaLR -43 468 1 234 260 10 73 chr13 28337281 28337377 -73535792 + MIR SINE MIR 161 250 -12 1741 150 11 11 chr13 28337432 28337706 -73535463 - AluSx SINE Alu -4 308 35 914 121 8 8 chr13 28337982 28338114 -73535055 - FRAM SINE Alu -21 155 24 1585 162 20 40 chr13 28338402 28338704 -73534465 - AluJb SINE Alu -16 296 1 906 135 195 0 chr13 28339127 28339312 -73533857 + L1MA8 LINE L1 6066 6286 -5 2203 118 0 0 chr13 28339562 28339858 -73533311 - AluSx SINE Alu -16 296 1 2222 108 0 16 chr13 28339860 28340174 -73532995 - AluSg SINE Alu -1 309 1 24 0 0 0 chr13 28340201 28340225 -73532944 + AT_rich Low_complexity Low_complexity 1 24 0 883 146 0 0 chr13 28340691 28340814 -73532355 + FLAM_C SINE Alu 1 123 -20 38 0 0 0 chr13 28340815 28340853 -73532316 + AT_rich Low_complexity Low_complexity 1 38 0 1994 142 10 3 chr13 28341493 28341789 -73531380 - AluSx SINE Alu -14 298 1 489 279 49 44 chr13 28342144 28342348 -73530821 - MIR SINE MIR -50 212 8 6028 62 11 1 chr13 28342492 28343219 -73529950 - L1PA6 LINE L1 -1 6153 5420 224 333 82 53 chr13 28343738 28343945 -73529224 + L2 LINE L2 2845 3057 -215 296 250 188 0 chr13 28344079 28344191 -73528978 - MER112 DNA MER1_type -97 163 31 248 277 67 42 chr13 28344237 28344284 -73528885 + L2 LINE L2 3151 3195 -77 291 93 0 0 chr13 28344284 28344327 -73528842 + (CA)n Simple_repeat Simple_repeat 2 44 0 248 277 67 42 chr13 28344327 28344398 -73528771 + L2 LINE L2 3195 3272 0 505 257 107 27 chr13 28344875 28345062 -73528107 + MIR SINE MIR 42 243 -19 216 232 111 61 chr13 28345692 28345791 -73527378 + MIR SINE MIR 41 144 -64 722 240 36 58 chr13 28347065 28347283 -73525886 - MLT1A1 LTR MaLR 0 374 160 2268 97 7 16 chr13 28347283 28347593 -73525576 - AluSq SINE Alu -6 307 1 369 0 0 0 chr13 28347599 28347640 -73525529 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1510 144 67 42 chr13 28347699 28347983 -73525186 - AluJo SINE Alu 0 312 22 928 150 6 12 chr13 28348012 28348172 -73524997 - MLT1A1 LTR MaLR -206 159 1 257 265 36 0 chr13 28348301 28348384 -73524785 - L2 LINE L2 -111 3202 3117 2123 106 3 7 chr13 28348754 28349047 -73524122 + AluSx SINE Alu 1 292 -20 232 177 21 125 chr13 28349048 28349144 -73524025 + L1MCa LINE L1 1995 2080 -4346 492 297 53 65 chr13 28349157 28349465 -73523704 + L1MCa LINE L1 2434 2739 -3687 2301 98 166 5 chr13 28349465 28349832 -73523337 - MSTA LTR MaLR 0 428 3 492 297 53 65 chr13 28349832 28349863 -73523306 + L1MCa LINE L1 2739 2769 -3657 1301 79 6 0 chr13 28349903 28350067 -73523102 - AluSp SINE Alu -13 300 136 647 83 9 46 chr13 28350068 28350177 -73522992 + MER11A LTR ERVK 1161 1265 -1 514 235 10 0 chr13 28350201 28350299 -73522870 - L2 LINE L2 -6 3307 3209 392 270 59 2 chr13 28350299 28350447 -73522722 + L1ME1 LINE L1 5940 6104 -74 322 306 118 12 chr13 28350453 28350698 -73522471 - L2 LINE L2 -108 3205 2935 397 289 93 61 chr13 28350735 28350753 -73522416 + L1MCa LINE L1 3352 3368 -3058 2242 112 7 0 chr13 28350753 28351056 -73522113 + AluSg SINE Alu 1 305 -5 397 289 93 61 chr13 28351056 28351303 -73521866 + L1MCa LINE L1 3368 3605 -2821 2440 80 0 0 chr13 28351303 28351605 -73521564 + AluSc SINE Alu 1 302 -7 397 289 93 61 chr13 28351605 28352012 -73521157 + L1MCa LINE L1 3605 4047 -2379 2440 90 0 0 chr13 28352048 28352349 -73520820 + AluSc SINE Alu 1 301 -8 1146 125 0 28 chr13 28352349 28352516 -73520653 + AluSg/x SINE Alu 134 297 -13 1571 195 42 0 chr13 28352585 28352872 -73520297 + AluJb SINE Alu 1 299 -13 848 237 31 77 chr13 28352952 28353266 -73519903 + L1MC4a LINE L1 5543 5694 -468 2288 99 7 3 chr13 28353266 28353569 -73519600 + AluSq SINE Alu 1 304 -9 848 237 31 77 chr13 28353569 28353684 -73519485 + L1MC4a LINE L1 5694 5813 -349 1776 140 51 10 chr13 28354378 28354670 -73518499 + AluSx SINE Alu 1 304 -8 212 373 27 27 chr13 28354758 28354908 -73518261 - L2 LINE L2 -498 2816 2667 224 0 65 0 chr13 28355848 28355879 -73517290 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 818 169 0 15 chr13 28356058 28356188 -73516981 - FLAM_C SINE Alu -3 130 3 1013 223 125 75 chr13 28357184 28357386 -73515783 + MLT1D LTR MaLR 1 191 -314 2094 111 20 7 chr13 28357386 28357683 -73515486 + AluSx SINE Alu 1 301 -11 1013 223 125 75 chr13 28357683 28357710 -73515459 + MLT1D LTR MaLR 191 215 -290 2119 128 3 0 chr13 28357710 28358008 -73515161 + AluSx SINE Alu 1 299 -13 1013 223 125 75 chr13 28358008 28358258 -73514911 + MLT1D LTR MaLR 215 505 0 275 304 43 9 chr13 28358258 28358373 -73514796 + L2 LINE L2 2966 3084 -188 2146 109 0 0 chr13 28358950 28359268 -73513901 + AluSx SINE Alu 1 318 0 276 308 78 67 chr13 28359727 28359845 -73513324 + L1ME LINE L1 5531 5646 -475 1895 164 3 3 chr13 28359845 28360132 -73513037 + AluJb SINE Alu 1 287 -25 276 308 78 67 chr13 28360132 28360357 -73512812 + L1ME LINE L1 5646 5878 -243 333 295 75 75 chr13 28360773 28360837 -73512332 + L2 LINE L2 2650 2713 -601 2046 137 6 10 chr13 28360837 28361150 -73512019 + AluSx SINE Alu 1 312 0 333 295 75 75 chr13 28361150 28361353 -73511816 + L2 LINE L2 2712 2917 -397 1915 176 52 55 chr13 28361782 28361898 -73511271 - MLT1C LTR MaLR -4 463 348 2265 86 0 0 chr13 28361898 28362201 -73510968 + AluSg SINE Alu 1 303 0 1915 176 52 55 chr13 28362201 28362542 -73510627 - MLT1C LTR MaLR -119 348 6 1521 133 4 9 chr13 28362612 28362837 -73510332 - AluSx SINE Alu -88 224 1 423 200 0 0 chr13 28362887 28362962 -73510207 - MLT1A1 LTR MaLR 0 365 291 1011 126 0 0 chr13 28362962 28363097 -73510072 + AluSq/x SINE Alu 1 135 -177 2100 104 3 42 chr13 28363097 28363406 -73509763 + AluSg SINE Alu 1 297 -13 1190 246 63 0 chr13 28363406 28363674 -73509495 - MLT1A1 LTR MaLR -79 286 2 1428 192 23 23 chr13 28364043 28364203 -73508966 - AluJo SINE Alu -5 307 145 2090 120 23 3 chr13 28364203 28364502 -73508667 - AluSg SINE Alu -5 305 1 1428 192 23 23 chr13 28364502 28364643 -73508526 - AluJo SINE Alu -166 146 6 1838 147 3 11 chr13 28364912 28365227 -73507942 - AluSx SINE Alu 0 313 1 362 193 67 80 chr13 28365328 28365478 -73507691 + L1MC5 LINE L1 7507 7654 -307 863 85 0 0 chr13 28365478 28365584 -73507585 + AluSp SINE Alu 1 106 -207 25 51 0 0 chr13 28366625 28366664 -73506505 + AT_rich Low_complexity Low_complexity 1 39 0 1934 136 0 33 chr13 28368322 28368624 -73504545 + AluSx SINE Alu 1 292 -20 1786 156 3 35 chr13 28368627 28368942 -73504227 + AluJb SINE Alu 1 305 -7 245 299 9 169 chr13 28369404 28369635 -73503534 + L2 LINE L2 3027 3220 -52 2378 92 0 0 chr13 28369714 28370017 -73503152 + AluSg SINE Alu 2 304 -6 789 241 64 15 chr13 28370137 28370512 -73502657 + LTR16A LTR ERVL 7 450 0 2274 92 0 25 chr13 28370641 28370958 -73502211 + AluSc SINE Alu 1 309 0 299 284 23 0 chr13 28371034 28371122 -73502047 + MIR SINE MIR 90 179 -83 745 184 0 0 chr13 28371283 28371397 -73501772 + AluJo/FLAM SINE Alu 2 115 -187 2124 133 0 3 chr13 28371398 28371707 -73501462 + AluSg SINE Alu 1 308 -2 1029 110 0 85 chr13 28371707 28371754 -73501415 + AluSq/x SINE Alu 5 150 -162 739 87 0 0 chr13 28371754 28371846 -73501323 - AluS SINE Alu -220 93 2 1030 119 0 179 chr13 28371864 28372099 -73501070 - 7SK RNA RNA 0 193 1 522 143 0 48 chr13 28372101 28372185 -73500984 - AluSg/x SINE Alu -18 291 212 22 0 0 0 chr13 28373160 28373182 -73499987 + AT_rich Low_complexity Low_complexity 1 22 0 37 0 0 0 chr13 28375718 28375755 -73497414 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr13 28376004 28376026 -73497143 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 808 169 0 0 chr13 28376307 28376431 -73496738 - AluJb SINE Alu -188 124 1 183 381 79 8 chr13 28376701 28376827 -73496342 - MIR3 SINE MIR -38 170 36 1891 147 0 39 chr13 28377690 28378002 -73495167 + AluSx SINE Alu 1 300 -12 565 195 47 13 chr13 28380486 28380635 -73492534 + MER104 DNA Tc2 25 178 -2 23 33 0 0 chr13 28380775 28380805 -73492364 + AT_rich Low_complexity Low_complexity 1 30 0 1310 167 126 15 chr13 28380805 28381068 -73492101 - AluJo SINE Alu -19 293 2 426 244 106 8 chr13 28381926 28382049 -73491120 - MIR3 SINE MIR -23 185 51 263 183 33 50 chr13 28382176 28382236 -73490933 - MLT1K LTR MaLR -10 578 520 2163 103 0 0 chr13 28382580 28382881 -73490288 + AluSx SINE Alu 1 301 0 1962 120 0 31 chr13 28383146 28383461 -73489708 + AluSx SINE Alu 1 306 0 1643 173 0 28 chr13 28383577 28383860 -73489309 - AluSx SINE Alu -37 275 1 654 193 0 52 chr13 28384369 28384504 -73488665 + Charlie1 DNA MER1_type 1 128 -2633 286 225 67 11 chr13 28384501 28384590 -73488579 + Charlie1 DNA MER1_type 2623 2716 -45 * 574 123 38 0 chr13 28384625 28384731 -73488438 - L1MA7 LINE L1 -2 6289 6180 264 288 81 9 chr13 28384766 28384877 -73488292 + L2 LINE L2 3193 3311 -2 23 33 0 0 chr13 28385005 28385035 -73488134 + AT_rich Low_complexity Low_complexity 1 30 0 1760 124 161 24 chr13 28385588 28385918 -73487251 - THE1C LTR MaLR 0 375 1 2172 112 3 3 chr13 28385990 28386293 -73486876 - AluSc SINE Alu -6 303 1 26 50 0 0 chr13 28386516 28386556 -73486613 + AT_rich Low_complexity Low_complexity 1 40 0 402 290 57 0 chr13 28386820 28386944 -73486225 + L2 LINE L2 3137 3267 -5 387 41 0 0 chr13 28387470 28387519 -73485650 + (CA)n Simple_repeat Simple_repeat 1 49 0 1356 189 128 4 chr13 28388350 28388615 -73484554 + AluSx SINE Alu 1 298 -14 377 321 0 9 chr13 28388931 28389040 -73484129 - L2 LINE L2 -19 3294 3187 1046 131 199 0 chr13 28389672 28389903 -73483266 + Tigger3(Golem) DNA MER2_type 54 3029 0 2068 255 83 65 chr13 28390144 28391195 -73481974 + L2 LINE L2 2246 3313 0 213 354 157 22 chr13 28391181 28391500 -73481669 - L2 LINE L2 -450 2864 2503 * 22 35 0 0 chr13 28391837 28391866 -73481303 + AT_rich Low_complexity Low_complexity 1 29 0 937 134 0 0 chr13 28391900 28392044 -73481125 - FLAM_C SINE Alu 0 144 1 2205 99 7 0 chr13 28392062 28392356 -73480813 - AluSp SINE Alu -12 301 6 290 138 17 0 chr13 28392432 28392490 -73480679 + (CA)n Simple_repeat Simple_repeat 2 60 0 958 137 6 19 chr13 28392900 28393216 -73479953 - AluSq SINE Alu 0 439 126 2051 137 0 0 chr13 28393217 28393517 -73479652 - AluSx SINE Alu -12 300 1 234 0 0 0 chr13 28393520 28393546 -73479623 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2288 97 0 3 chr13 28393550 28393850 -73479319 - AluY SINE Alu -8 303 5 226 236 36 0 chr13 28394046 28394101 -73479068 + L2 LINE L2 3179 3235 -78 238 203 17 34 chr13 28394101 28394160 -73479009 + CT-rich Low_complexity Low_complexity 3 60 0 21 0 0 0 chr13 28394247 28394268 -73478901 + AT_rich Low_complexity Low_complexity 1 21 0 328 42 21 0 chr13 28395668 28395716 -73477453 - AluY SINE Alu -253 49 1 1778 126 49 11 chr13 28395716 28395881 -73477288 - AluSx SINE Alu -15 297 140 2143 78 24 3 chr13 28395881 28395895 -73477274 - AluSc SINE Alu -10 299 287 486 0 0 0 chr13 28395895 28395949 -73477220 + (TTATG)n Simple_repeat Simple_repeat 2 55 0 2143 78 24 3 chr13 28395949 28396227 -73476942 - AluSc SINE Alu -22 287 1 315 0 0 0 chr13 28396227 28396262 -73476907 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1778 126 49 11 chr13 28396262 28396381 -73476788 - AluSx SINE Alu -171 141 1 1171 176 24 0 chr13 28396444 28396613 -73476556 - AluSg/x SINE Alu -8 302 126 207 0 0 0 chr13 28396613 28396636 -73476533 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1171 176 24 0 chr13 28396636 28396671 -73476498 - AluSg/x SINE Alu -184 126 93 258 158 0 0 chr13 28396677 28396715 -73476454 - Alu SINE Alu -265 38 1 181 294 188 55 chr13 28396962 28397055 -73476114 - L2 LINE L2 -218 3095 3016 2127 112 0 53 chr13 28397055 28397377 -73475792 + AluSg SINE Alu 1 305 -5 181 294 188 55 chr13 28397377 28397501 -73475668 - L2 LINE L2 -297 3016 2849 1844 117 30 43 chr13 28397532 28397653 -73475516 + AluSx SINE Alu 1 122 -190 2671 3 0 0 chr13 28397653 28397936 -73475233 + AluYa5 SINE Alu 16 298 -13 1844 117 30 43 chr13 28397936 28398113 -73475056 + AluSx SINE Alu 122 295 -17 237 65 0 0 chr13 28398113 28398144 -73475025 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 288 258 0 15 chr13 28398681 28398747 -73474422 + GA-rich Low_complexity Low_complexity 3 67 0 26 30 0 0 chr13 28399106 28399139 -73474030 + AT_rich Low_complexity Low_complexity 1 33 0 927 134 0 0 chr13 28399297 28399439 -73473730 + L1PA14 LINE L1 6019 6160 -1 1084 198 78 83 chr13 28399502 28399532 -73473637 - L1MC5 LINE L1 -370 7591 7562 4109 108 11 0 chr13 28399532 28400080 -73473089 + MER41A LTR ERV1 1 554 0 1084 198 78 83 chr13 28400080 28400444 -73472725 - L1MC5 LINE L1 -399 7562 7199 1763 167 27 10 chr13 28400460 28400760 -73472409 + AluJb SINE Alu 1 305 -7 2420 68 22 19 chr13 28401052 28401363 -73471806 + AluSx SINE Alu 1 312 0 2346 113 0 0 chr13 28401375 28401684 -73471485 + AluSq SINE Alu 1 309 -4 1781 120 50 14 chr13 28401752 28401884 -73471285 + AluSx SINE Alu 1 127 -185 2047 103 17 0 chr13 28401884 28402174 -73470995 + AluSx SINE Alu 1 295 -17 1781 120 50 14 chr13 28402174 28402324 -73470845 + AluSx SINE Alu 127 293 -19 579 94 19 19 chr13 28402341 28402447 -73470722 + (GGAA)n Simple_repeat Simple_repeat 1 106 0 185 133 0 0 chr13 28402579 28402609 -73470560 + MER5C DNA MER1_type 78 107 -217 608 126 63 0 chr13 28402640 28402735 -73470434 + AluY SINE Alu 203 303 -8 728 190 26 65 chr13 28402759 28402955 -73470214 + MER5C DNA MER1_type 102 289 -35 2124 118 3 25 chr13 28402955 28403270 -73469899 + AluSx SINE Alu 1 308 -4 728 190 26 65 chr13 28403270 28403305 -73469864 + MER5C DNA MER1_type 289 324 0 1130 133 61 0 chr13 28403500 28403665 -73469504 - AluSx SINE Alu -137 175 1 2390 197 28 71 chr13 28403776 28404355 -73468814 + MLT2B3 LTR ERVL 1 554 0 2465 57 0 13 chr13 28404376 28404675 -73468494 - AluY SINE Alu -16 295 1 1484 216 65 38 chr13 28404841 28405286 -73467883 + HAL1 LINE L1 1207 1663 -844 1824 176 116 51 chr13 28405332 28405786 -73467383 - MLT2B1 LTR ERVL -31 523 1 585 258 56 52 chr13 28405786 28406019 -73467150 - L2 LINE L2 -27 3286 3053 1166 83 0 0 chr13 28406019 28406163 -73467006 + AluSq/x SINE Alu 1 144 -168 2388 84 10 0 chr13 28406163 28406462 -73466707 + AluSg SINE Alu 1 302 -8 1649 93 32 0 chr13 28406787 28407003 -73466166 - AluSq SINE Alu -65 248 26 1744 169 3 29 chr13 28407048 28407355 -73465814 - AluJo SINE Alu -13 299 1 1840 109 11 8 chr13 28407363 28407649 -73465520 - AluSc SINE Alu 0 303 17 590 125 0 0 chr13 28407653 28407733 -73465436 + AluSg/x SINE Alu 215 294 -16 2392 81 0 0 chr13 28407770 28408066 -73465103 - AluY SINE Alu -15 296 1 2149 77 4 0 chr13 28408852 28409111 -73464058 + AluSp SINE Alu 31 290 -23 1113 160 50 178 chr13 28410266 28410575 -73462594 + L1MC/D LINE L1 5217 5431 -1021 2052 120 0 7 chr13 28410575 28410874 -73462295 - AluSx SINE Alu -15 297 1 1113 160 50 178 chr13 28410874 28411120 -73462049 + L1MC/D LINE L1 5431 5707 -745 1408 179 10 66 chr13 28411121 28411307 -73461862 - AluSq SINE Alu 0 320 158 2526 65 0 7 chr13 28411307 28411616 -73461553 - AluSg1 SINE Alu -2 307 1 1408 179 10 66 chr13 28411616 28411766 -73461403 - AluSq SINE Alu -162 158 1 1383 64 0 12 chr13 28412046 28412219 -73460950 - AluSg/x SINE Alu -13 297 127 1255 175 51 78 chr13 28412703 28412714 -73460455 - L1MB8 LINE L1 -34 6150 6140 2206 112 0 10 chr13 28412714 28413019 -73460150 - AluY SINE Alu -9 302 1 1255 175 51 78 chr13 28413019 28413049 -73460120 - L1MB8 LINE L1 -44 6140 6111 1434 166 121 11 chr13 28413049 28413314 -73459855 + AluJb SINE Alu 1 294 -18 1255 175 51 78 chr13 28413314 28413603 -73459566 - L1MB8 LINE L1 -73 6111 5828 461 214 56 0 chr13 28413603 28413692 -73459477 + MER2 DNA MER2_type 1 94 -251 207 0 0 0 chr13 28413692 28413715 -73459454 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5500 42 0 0 chr13 28413715 28414357 -73458812 - L1PA5 LINE L1 -22 6132 5491 1050 184 90 30 chr13 28414357 28414590 -73458579 + MER2 DNA MER2_type 99 345 0 1093 176 67 13 chr13 28414590 28414829 -73458340 - L1MB8 LINE L1 -355 5829 5578 2203 103 0 13 chr13 28414829 28415130 -73458039 - AluSq SINE Alu -16 297 1 2706 126 62 2 chr13 28415575 28415979 -73457190 - MSTA LTR MaLR 0 428 1 2321 110 3 0 chr13 28417200 28417510 -73455659 - AluSx SINE Alu 0 312 2 237 246 0 31 chr13 28417580 28417645 -73455524 + L2 LINE L2 3210 3272 0 2074 105 11 0 chr13 28418014 28418291 -73454878 + AluSp SINE Alu 1 280 -33 336 322 208 5 chr13 28418430 28418632 -73454537 - L2 LINE L2 -218 3054 2812 420 250 100 31 chr13 28419932 28420092 -73453077 - MER5A DNA MER1_type -12 177 7 367 110 16 12 chr13 28420303 28420377 -73452792 + AluS SINE Alu 1 59 -244 190 333 204 0 chr13 28420757 28420850 -73452319 - L2 LINE L2 -7 3265 3154 724 175 25 8 chr13 28420960 28421080 -73452089 + AluJ SINE Alu 2 123 -189 904 170 19 22 chr13 28421129 28421372 -73451797 + AluJ SINE Alu 104 309 -3 299 310 60 0 chr13 28422973 28423073 -73450096 - L2 LINE L2 -9 3304 3199 608 286 11 27 chr13 28423079 28423264 -73449905 - MER5A DNA MER1_type -1 188 7 943 143 54 24 chr13 28423552 28423720 -73449449 + AluSq SINE Alu 134 306 -7 650 300 112 36 chr13 28424478 28424971 -73448198 - L1M4 LINE L1 -1250 4896 4367 1336 146 5 41 chr13 28424976 28425195 -73447974 + AluJb SINE Alu 84 294 -18 249 180 81 10 chr13 28425534 28425630 -73447539 + L1MA9 LINE L1 6213 6333 -1 264 48 0 0 chr13 28426367 28426409 -73446760 - AluSp/q SINE Alu -3 300 259 2308 97 7 0 chr13 28426753 28427052 -73446117 - AluSp SINE Alu -12 301 1 1520 88 0 5 chr13 28427073 28427265 -73445904 - AluSq SINE Alu -122 191 1 2309 107 0 7 chr13 28428016 28428325 -73444844 + AluSx SINE Alu 1 307 -5 2299 103 3 7 chr13 28429176 28429527 -73443642 - AluSg SINE Alu 0 350 1 2051 144 3 26 chr13 28430463 28430775 -73442394 + AluJo SINE Alu 1 305 -7 821 211 68 0 chr13 28431224 28431385 -73441784 + FAM SINE Alu 1 172 -3 1960 161 3 0 chr13 28431750 28432054 -73441115 + AluJb SINE Alu 1 305 -7 26 50 0 0 chr13 28432681 28432721 -73440448 + AT_rich Low_complexity Low_complexity 1 40 0 2291 86 23 7 chr13 28432888 28433190 -73439979 + AluSp SINE Alu 7 313 0 32 26 0 0 chr13 28433374 28433413 -73439756 + AT_rich Low_complexity Low_complexity 1 39 0 2048 117 3 49 chr13 28433698 28434023 -73439146 - AluSx SINE Alu -2 310 1 393 22 0 0 chr13 28434602 28434648 -73438521 + (CA)n Simple_repeat Simple_repeat 1 46 0 416 306 166 5 chr13 28435607 28435806 -73437363 - MIR SINE MIR 0 262 32 1883 154 0 3 chr13 28436067 28436373 -73436796 - AluSx SINE Alu 0 305 1 2513 83 3 0 chr13 28436781 28437093 -73436076 + AluSp SINE Alu 1 313 0 203 337 36 12 chr13 28437995 28438078 -73435091 + MIR SINE MIR 42 126 -82 234 0 0 0 chr13 28438220 28438246 -73434923 + (T)n Simple_repeat Simple_repeat 1 26 0 2284 110 0 0 chr13 28438664 28438964 -73434205 + AluSq SINE Alu 1 300 -13 1585 163 3 72 chr13 28438978 28439297 -73433872 + AluJb SINE Alu 3 299 -13 198 0 0 0 chr13 28439303 28439325 -73433844 + (TA)n Simple_repeat Simple_repeat 2 23 0 479 254 30 66 chr13 28439331 28439528 -73433641 + MER102b DNA MER1_type 149 338 -3 1007 163 58 0 chr13 28439533 28439723 -73433446 + MER3 DNA MER1_type 4 204 -5 192 265 217 24 chr13 28439925 28440008 -73433161 - L2 LINE L2 -18 3295 3197 222 37 0 0 chr13 28440372 28440399 -73432770 + (T)n Simple_repeat Simple_repeat 1 27 0 196 304 0 0 chr13 28440882 28440938 -73432231 - L2 LINE L2 0 3313 3258 1032 143 9 67 chr13 28441199 28441337 -73431832 + MER2 DNA MER2_type 1 123 -222 1854 144 37 18 chr13 28441337 28441664 -73431505 + MER1B DNA MER1_type 1 333 -4 1032 143 9 67 chr13 28441664 28441748 -73431421 + MER2 DNA MER2_type 123 210 -135 2306 104 0 0 chr13 28441780 28442079 -73431090 - AluSx SINE Alu -13 299 1 243 320 0 0 chr13 28442088 28442166 -73431003 + MER2 DNA MER2_type 268 345 0 253 242 21 63 chr13 28442471 28442566 -73430603 + MIR SINE MIR 172 262 0 2170 107 31 3 chr13 28442790 28443081 -73430088 - AluSx SINE Alu -13 299 1 2303 117 17 47 chr13 28443418 28443785 -73429384 - L1PB1 LINE L1 0 6151 5796 363 44 0 0 chr13 28443785 28443830 -73429339 + (TA)n Simple_repeat Simple_repeat 2 46 0 2303 117 17 47 chr13 28443830 28443865 -73429304 - L1PB1 LINE L1 -355 5796 5761 543 279 33 16 chr13 28443887 28444070 -73429099 + AluY SINE Alu 110 295 -16 1529 121 14 5 chr13 28444317 28444532 -73428637 - AluSc SINE Alu -92 217 1 2187 118 0 0 chr13 28444697 28444986 -73428183 - AluSg SINE Alu -21 289 1 241 91 18 18 chr13 28445241 28445296 -73427873 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2411 82 0 13 chr13 28445302 28445619 -73427550 - AluSq SINE Alu 0 313 1 24 53 0 0 chr13 28446196 28446234 -73426935 + AT_rich Low_complexity Low_complexity 1 38 0 1975 136 37 0 chr13 28446895 28447189 -73425980 - AluSx SINE Alu -7 305 1 333 286 13 0 chr13 28447375 28447452 -73425717 + L2 LINE L2 3234 3311 -2 1126 138 37 43 chr13 28448993 28449181 -73423988 - AluJb SINE Alu -19 293 107 348 177 0 0 chr13 28449214 28449276 -73423893 + MER3 DNA MER1_type 1 62 -147 1869 178 15 32 chr13 28449940 28450340 -73422829 + Tigger6 DNA MER2_type 1205 1597 0 2191 196 16 64 chr13 28450342 28450637 -73422532 + MER44D DNA MER2_type 1 311 -2176 2180 66 43 26 chr13 28450637 28450940 -73422229 + AluY SINE Alu 1 308 -3 2191 196 16 64 chr13 28450940 28451222 -73421947 + MER44D DNA MER2_type 311 605 0 619 268 142 0 chr13 28451316 28451521 -73421648 - MIR SINE MIR -27 235 2 2416 88 3 0 chr13 28451728 28452034 -73421135 + AluSq SINE Alu 1 307 -6 528 267 79 0 chr13 28452725 28452927 -73420242 + L1ME LINE L1 5559 5776 -345 29 0 0 0 chr13 28454515 28454544 -73418625 + AT_rich Low_complexity Low_complexity 1 29 0 967 261 157 15 chr13 28454576 28455036 -73418133 + Charlie7 DNA MER1_type 115 639 -1973 277 247 12 12 chr13 28455037 28455118 -73418051 - LTR33A LTR ERVL -4 519 439 302 270 0 43 chr13 28455387 28455502 -73417667 + Charlie7 DNA MER1_type 641 750 -1862 395 293 93 20 chr13 28455925 28455987 -73417182 - MER5B DNA MER1_type 0 178 122 2343 107 3 0 chr13 28455987 28456295 -73416874 + AluSq SINE Alu 1 309 -4 395 293 93 20 chr13 28456295 28456382 -73416787 - MER5B DNA MER1_type -56 122 18 1437 79 0 3 chr13 28456491 28456732 -73416437 - AluY SINE Alu -3 308 1 912 153 6 62 chr13 28457580 28457757 -73415412 + AluJo SINE Alu 1 167 -145 1706 86 5 0 chr13 28457758 28457978 -73415191 + AluY SINE Alu 72 292 -19 2267 109 0 0 chr13 28457986 28458289 -73414880 + AluY SINE Alu 1 303 -8 1728 197 0 7 chr13 28458931 28459220 -73413949 + AluJo SINE Alu 1 287 -25 1706 160 32 0 chr13 28459278 28459559 -73413610 - AluJb SINE Alu -22 290 1 204 67 0 0 chr13 28459564 28459594 -73413575 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1574 154 71 11 chr13 28459600 28459866 -73413303 - AluJo SINE Alu -30 282 1 29 0 0 0 chr13 28459945 28459974 -73413195 + AT_rich Low_complexity Low_complexity 1 29 0 2530 51 0 3 chr13 28460072 28460368 -73412801 - AluY SINE Alu -16 295 1 553 146 0 3 chr13 28460404 28460521 -73412648 + LTR24 LTR ERV1 350 467 0 26 0 0 0 chr13 28461087 28461113 -73412056 + AT_rich Low_complexity Low_complexity 1 26 0 1906 124 54 10 chr13 28461113 28461411 -73411758 - AluSx SINE Alu -1 311 1 2455 81 0 0 chr13 28461819 28462114 -73411055 + AluSg SINE Alu 1 295 -15 670 131 0 0 chr13 28463709 28463808 -73409361 + AluS SINE Alu 4 102 -211 1547 133 19 8 chr13 28463945 28464209 -73408960 + AluSq SINE Alu 36 302 -11 180 0 0 0 chr13 28464851 28464871 -73408298 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr13 28465715 28465736 -73407433 + AT_rich Low_complexity Low_complexity 1 21 0 304 314 50 0 chr13 28466676 28466771 -73406398 + MIR SINE MIR 7 106 -102 2251 110 7 0 chr13 28466871 28467170 -73405999 - AluSq SINE Alu -12 301 1 1716 159 212 17 chr13 28467356 28467714 -73405455 - MSTC LTR MaLR 0 428 1 2359 105 0 0 chr13 28468022 28468327 -73404842 - AluSq SINE Alu -8 305 1 2068 107 0 17 chr13 28470919 28471231 -73401938 - AluSx SINE Alu 0 307 1 2211 92 7 3 chr13 28471470 28471764 -73401405 - AluY SINE Alu -16 295 1 2036 122 4 0 chr13 28471857 28472135 -73401034 + AluSg SINE Alu 1 279 -31 1440 91 0 11 chr13 28472206 28472393 -73400776 - AluSp SINE Alu -17 296 112 1069 74 0 47 chr13 28472530 28472543 -73400626 - AluSg SINE Alu -168 142 130 2109 109 20 0 chr13 28472543 28472837 -73400332 - AluSp SINE Alu -13 300 1 1069 74 0 47 chr13 28472837 28472972 -73400197 - AluSg SINE Alu -180 130 1 452 208 0 10 chr13 28472973 28473074 -73400095 + L1ME1 LINE L1 5698 5797 -369 578 242 224 9 chr13 28473079 28473298 -73399871 + L1ME1 LINE L1 5876 6141 -25 1936 122 14 0 chr13 28473321 28473607 -73399562 + AluSx SINE Alu 3 292 -20 233 275 88 55 chr13 28473994 28474091 -73399078 + L1MC/D LINE L1 5725 5817 -1991 2239 78 7 0 chr13 28474091 28474384 -73398785 + AluSx SINE Alu 1 295 -17 233 275 88 55 chr13 28474384 28474468 -73398701 + L1MC/D LINE L1 5817 5912 -1896 2042 105 16 10 chr13 28475276 28475582 -73397587 + AluY SINE Alu 1 308 -3 1793 151 3 3 chr13 28476795 28477079 -73396090 + AluJo SINE Alu 3 286 -26 1145 186 46 8 chr13 28477085 28477322 -73395847 + AluSx SINE Alu 48 293 -19 1439 145 0 40 chr13 28477992 28478240 -73394929 - AluJb SINE Alu -64 248 11 213 269 283 14 chr13 28478470 28478615 -73394554 + MIR SINE MIR 76 259 -3 2033 114 7 3 chr13 28479077 28479374 -73393795 + AluSq SINE Alu 1 298 -15 864 103 0 29 chr13 28479377 28479513 -73393656 + AluSg/x SINE Alu 180 311 -1 1573 154 116 16 chr13 28479873 28480191 -73392978 - MLT1A1 LTR MaLR 0 365 16 2228 100 0 3 chr13 28480191 28480491 -73392678 + AluSg SINE Alu 1 299 -11 192 77 0 0 chr13 28480559 28480585 -73392584 + (T)n Simple_repeat Simple_repeat 1 26 0 247 167 106 30 chr13 28481554 28481620 -73391549 - MLT1K LTR MaLR -2 586 516 264 30 0 0 chr13 28481779 28481812 -73391357 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2007 114 0 0 chr13 28481812 28482092 -73391077 - AluSx SINE Alu -32 280 1 332 316 86 34 chr13 28482484 28482601 -73390568 + L2 LINE L2 3146 3268 -4 1435 144 17 44 chr13 28482976 28483274 -73389895 - AluSx SINE Alu -22 290 1 330 247 34 51 chr13 28483276 28483445 -73389724 - L1MC/D LINE L1 -297 5824 5673 1665 139 0 77 chr13 28483788 28484098 -73389071 + AluSx SINE Alu 6 291 -21 824 161 0 8 chr13 28484103 28484233 -73388936 - FLAM_C SINE Alu 0 133 5 323 264 127 59 chr13 28484362 28484374 -73388795 - HAL1 LINE L1 -1446 1061 1051 1650 145 6 42 chr13 28484374 28484585 -73388584 - AluJo SINE Alu 0 312 114 1742 133 91 0 chr13 28484585 28484871 -73388298 - AluSx SINE Alu 0 312 1 1650 145 6 42 chr13 28484871 28484970 -73388199 - AluJo SINE Alu -198 114 13 323 264 127 59 chr13 28484970 28485264 -73387905 - HAL1 LINE L1 -1456 1051 734 461 356 68 5 chr13 28485500 28485722 -73387447 - MIR SINE MIR -1 261 26 261 139 23 0 chr13 28485725 28485768 -73387401 + FRAM/FAM SINE Alu 26 69 -97 248 114 0 0 chr13 28486359 28486394 -73386775 + U2 snRNA snRNA 1 35 -153 1870 105 0 4 chr13 28486454 28486711 -73386458 + AluSq SINE Alu 1 256 -57 1817 245 92 6 chr13 28486711 28487201 -73385968 + MLT1F LTR MaLR 11 542 0 914 103 0 0 chr13 28487930 28488056 -73385113 - FLAM_C SINE Alu -7 126 1 2536 45 0 3 chr13 28488062 28488374 -73384795 - AluY SINE Alu 0 311 1 713 134 19 70 chr13 28489607 28489764 -73383405 - AluJo SINE Alu -162 150 2 818 127 0 24 chr13 28489772 28489898 -73383271 + AluJo/FLAM SINE Alu 10 132 -180 1950 131 3 7 chr13 28489899 28490033 -73383136 + AluSx SINE Alu 1 134 -178 2264 77 3 13 chr13 28490033 28490346 -73382823 + AluY SINE Alu 1 310 -1 1950 131 3 7 chr13 28490346 28490517 -73382652 + AluSx SINE Alu 134 305 -7 1754 134 31 7 chr13 28490540 28490830 -73382339 - AluSx SINE Alu -15 297 1 1276 268 102 32 chr13 28490830 28491388 -73381781 - L2 LINE L2 -259 3054 2227 1907 211 114 30 chr13 28491449 28491941 -73381228 - MLT1H LTR MaLR -16 533 1 2427 59 3 0 chr13 28491959 28492262 -73380907 - AluY SINE Alu -7 304 1 1526 147 62 38 chr13 28492345 28492637 -73380532 + AluJb SINE Alu 11 309 -3 1634 181 3 3 chr13 28492641 28492944 -73380225 + AluJo SINE Alu 1 303 -9 266 280 38 68 chr13 28493269 28493401 -73379768 - L3b LINE CR1 -164 1419 1292 1917 145 0 3 chr13 28493794 28494091 -73379078 - AluSg SINE Alu -14 296 1 2534 62 0 0 chr13 28494100 28494407 -73378762 - AluY SINE Alu -4 307 1 328 268 106 16 chr13 28494589 28494712 -73378457 - MIR SINE MIR -81 181 48 467 271 88 26 chr13 28494930 28495122 -73378047 + L3 LINE CR1 794 997 -580 2278 69 10 7 chr13 28495136 28495440 -73377729 + AluY SINE Alu 1 305 -6 2074 114 7 0 chr13 28495755 28496052 -73377117 + AluSx SINE Alu 1 299 -13 820 231 0 0 chr13 28496105 28496265 -73376904 + FRAM SINE Alu 6 165 -11 1142 202 62 78 chr13 28496267 28496543 -73376626 + MER39 LTR ERV1 343 613 -94 2104 97 13 0 chr13 28496543 28496841 -73376328 + AluSc SINE Alu 1 302 -7 1142 202 62 78 chr13 28496841 28496935 -73376234 + MER39 LTR ERV1 613 707 0 841 158 0 0 chr13 28497691 28497824 -73375345 - AluJb SINE Alu -179 133 1 734 160 0 83 chr13 28497847 28497991 -73375178 + FLAM_C SINE Alu 6 137 -6 747 217 0 26 chr13 28498736 28498888 -73374281 - FRAM SINE Alu -21 155 8 414 247 65 71 chr13 28499522 28499676 -73373493 + L2 LINE L2 1917 2069 -1245 1233 161 107 29 chr13 28499676 28499956 -73373213 - AluJo SINE Alu -10 302 1 332 145 246 0 chr13 28499959 28500028 -73373141 - FLAM_A SINE Alu -13 120 35 566 234 269 29 chr13 28500180 28500745 -73372424 + L2 LINE L2 2305 3054 -259 653 208 8 0 chr13 28501378 28501503 -73371666 + FLAM_C SINE Alu 1 126 -17 975 181 80 8 chr13 28501802 28502039 -73371130 + AluJo SINE Alu 34 287 -25 311 218 129 10 chr13 28502331 28502432 -73370737 - MER58 DNA MER1_type -2161 259 147 1818 143 11 0 chr13 28503877 28504163 -73369006 - AluSx SINE Alu -23 289 1 973 182 30 2 chr13 28507890 28507952 -73365217 + AluJo SINE Alu 7 66 -246 189 0 0 0 chr13 28507952 28507973 -73365196 + (CA)n Simple_repeat Simple_repeat 2 22 0 973 182 30 2 chr13 28507973 28508146 -73365023 + AluJo SINE Alu 66 297 -15 1051 68 0 0 chr13 28508544 28508677 -73364492 + AluSp SINE Alu 149 281 -32 2108 85 0 7 chr13 28509004 28509286 -73363883 - AluSx SINE Alu -31 281 2 2279 89 0 0 chr13 28509627 28509931 -73363238 + AluSx SINE Alu 1 304 -8 274 179 86 60 chr13 28510001 28510118 -73363051 - MER112 DNA MER1_type -43 217 98 1091 127 0 0 chr13 28510118 28510343 -73362826 - AluSg/x SINE Alu 0 347 123 1876 157 0 0 chr13 28510722 28511022 -73362147 + AluSx SINE Alu 1 300 -12 1982 95 0 0 chr13 28511091 28511353 -73361816 + AluSq SINE Alu 1 262 -51 526 134 24 0 chr13 28511353 28511435 -73361734 + FLAM SINE Alu 45 128 -15 2361 60 0 7 chr13 28511501 28511801 -73361368 + AluY SINE Alu 1 298 -13 449 246 73 92 chr13 28511809 28511895 -73361274 + L2 LINE L2 3015 3101 -212 1648 148 79 0 chr13 28511895 28512173 -73360996 - AluSx SINE Alu -10 302 3 2388 64 0 10 chr13 28512173 28512486 -73360683 - AluY SINE Alu -1 310 1 449 246 73 92 chr13 28512486 28512534 -73360635 + L2 LINE L2 3100 3147 -166 2204 103 10 0 chr13 28512534 28512844 -73360325 - AluSp SINE Alu 0 313 1 449 246 73 92 chr13 28512844 28512967 -73360202 + L2 LINE L2 3147 3269 -44 1895 137 0 40 chr13 28512969 28513291 -73359878 + AluSx SINE Alu 1 309 -3 228 235 0 74 chr13 28513428 28513509 -73359660 + L1ME4a LINE L1 5946 6020 -101 813 147 0 23 chr13 28513753 28513882 -73359287 + FLAM_C SINE Alu 2 127 -16 2100 93 23 3 chr13 28514473 28514775 -73358394 - AluSg SINE Alu -2 308 1 2238 96 3 6 chr13 28514785 28515097 -73358072 - AluY SINE Alu 0 311 1 558 0 0 0 chr13 28515218 28515280 -73357889 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 2377 85 0 0 chr13 28515873 28516178 -73356991 + AluSp SINE Alu 1 305 -8 237 97 0 0 chr13 28516422 28516453 -73356716 + AluSx SINE Alu 1 31 -272 2015 117 0 0 chr13 28516472 28516755 -73356414 + AluSx SINE Alu 21 303 -9 780 171 0 0 chr13 28517044 28517167 -73356002 - FLAM_A SINE Alu -10 123 1 1625 175 0 23 chr13 28517749 28518058 -73355111 - AluJb SINE Alu -8 304 3 233 213 21 0 chr13 28518293 28518340 -73354829 + Charlie1 DNA MER1_type 37 84 -2677 2434 57 0 0 chr13 28518343 28518641 -73354528 - AluY SINE Alu -13 298 1 379 117 0 0 chr13 28518641 28518701 -73354468 - AluSp/q SINE Alu -7 296 237 410 118 15 0 chr13 28518823 28518891 -73354278 - L1PB2 LINE L1 -14 6137 6069 466 181 0 0 chr13 28518891 28518963 -73354206 + MER45 DNA AcHobo 1510 1581 0 795 244 84 65 chr13 28519002 28519342 -73353827 - L2 LINE L2 -761 2553 2204 351 44 0 0 chr13 28519342 28519387 -73353782 + (CA)n Simple_repeat Simple_repeat 2 46 0 795 244 84 65 chr13 28519387 28519415 -73353754 - L2 LINE L2 -1110 2204 2178 240 302 0 0 chr13 28519978 28520031 -73353138 + L2 LINE L2 3261 3313 0 452 297 8 31 chr13 28520191 28520319 -73352850 - L2 LINE L2 -1 3312 3188 403 310 35 9 chr13 28521024 28521137 -73352032 + MIR SINE MIR 31 146 -116 251 174 217 0 chr13 28521839 28521908 -73351261 + MER91B DNA MER1_type 47 130 -60 519 206 0 10 chr13 28521925 28522022 -73351147 + MER91B DNA MER1_type 91 186 -4 229 200 127 0 chr13 28522809 28522864 -73350305 - L2 LINE L2 -74 3198 3137 2226 97 0 0 chr13 28523004 28523302 -73349867 - AluSg1 SINE Alu -11 298 1 28 0 0 0 chr13 28723944 28723972 -73149197 + AT_rich Low_complexity Low_complexity 1 28 0 827 233 6 6 chr13 28724231 28724407 -73148762 - FRAM SINE Alu -1 175 1 214 50 50 0 chr13 28724408 28724448 -73148721 + (TA)n Simple_repeat Simple_repeat 2 43 0 540 308 115 36 chr13 28725083 28725414 -73147755 - L2 LINE L2 -2 3311 2955 27 29 0 0 chr13 28725786 28725820 -73147349 + AT_rich Low_complexity Low_complexity 1 34 0 9360 162 37 15 chr13 28725820 28728797 -73144372 - L1MA3 LINE L1 0 6305 3260 2108 120 3 3 chr13 28728800 28729099 -73144070 - AluSq SINE Alu -8 305 7 9344 119 25 32 chr13 28729101 28730513 -73142656 - L1M1 LINE L1 -3924 3641 2252 1496 209 7 3 chr13 28730513 28730809 -73142360 + AluJb SINE Alu 1 297 -15 9344 119 25 32 chr13 28730809 28731045 -73142124 - L1M1 LINE L1 -5313 2252 2016 680 144 8 76 chr13 28731039 28731171 -73141998 + L1M1 LINE L1 481 603 -6962 * 1868 152 32 7 chr13 28731177 28731487 -73141682 - L1M1 LINE L1 -5551 2014 1697 * 4608 186 11 36 chr13 28731485 28732362 -73140807 - L1M1 LINE L1 -6702 863 9 22 0 0 0 chr13 28732657 28732679 -73140490 + AT_rich Low_complexity Low_complexity 1 22 0 1675 257 32 25 chr13 28732904 28733553 -73139616 - L1MEc LINE L1 -4122 2274 1621 1535 237 24 44 chr13 28733568 28733981 -73139188 + MSTB1 LTR MaLR 1 405 -27 499 273 97 0 chr13 28733982 28734136 -73139033 - FAM SINE Alu -5 170 2 698 85 11 0 chr13 28734156 28734250 -73138919 - AluSq/x SINE Alu -179 133 39 286 27 27 0 chr13 28734251 28734288 -73138881 + MSTB1 LTR MaLR 395 432 0 30 0 0 0 chr13 28734311 28734341 -73138828 + AT_rich Low_complexity Low_complexity 1 30 0 2131 94 16 26 chr13 28734390 28734699 -73138470 - AluY SINE Alu -3 308 3 248 375 27 9 chr13 28734975 28735087 -73138082 - MER81 DNA DNA 0 114 1 2998 282 51 19 chr13 28735089 28736293 -73136876 - L1MEc LINE L1 -5125 1271 30 2185 120 3 0 chr13 28736357 28736656 -73136513 + AluSp SINE Alu 1 300 -13 557 311 128 45 chr13 28737186 28737633 -73135536 + MLT1J LTR MaLR 28 511 0 21 0 0 0 chr13 28739307 28739328 -73133841 + AT_rich Low_complexity Low_complexity 1 21 0 3680 264 75 80 chr13 28739355 28743617 -73129552 + L1MC/D LINE L1 6 4426 -2000 330 141 16 0 chr13 28743617 28743681 -73129488 + L1PA16 LINE L1 6102 6166 0 3680 264 75 80 chr13 28743681 28744804 -73128365 + L1MC/D LINE L1 4426 5553 -873 26 30 0 0 chr13 28745133 28745166 -73128003 + AT_rich Low_complexity Low_complexity 1 33 0 1283 178 119 3 chr13 28745169 28745455 -73127714 + L1MC/D LINE L1 5662 5980 -633 2342 86 0 3 chr13 28745547 28745848 -73127321 - AluSq SINE Alu -13 300 1 268 243 95 74 chr13 28746093 28746241 -73126928 + L2 LINE L2 3159 3309 -4 326 294 129 18 chr13 28746261 28746431 -73126738 - MER5A DNA MER1_type 0 189 1 233 153 0 34 chr13 28746891 28746950 -73126219 + (TTATA)n Simple_repeat Simple_repeat 4 60 0 2072 127 0 0 chr13 28748130 28748429 -73124740 + AluY SINE Alu 1 299 -12 441 169 0 0 chr13 28749639 28749722 -73123447 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 34 78 0 0 chr13 28749967 28750031 -73123138 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr13 28750120 28750143 -73123026 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr13 28751761 28751797 -73121372 + AT_rich Low_complexity Low_complexity 1 36 0 1765 205 87 11 chr13 28751857 28752237 -73120932 + L1P3 LINE L1 36 444 -5431 736 168 15 0 chr13 28752258 28752389 -73120780 + L1 LINE L1 4844 4976 -1170 685 242 215 44 chr13 28752591 28752878 -73120291 - L1MEc LINE L1 -2764 3451 3214 2253 88 10 3 chr13 28752878 28753186 -73119983 - AluY SINE Alu -1 310 1 685 242 215 44 chr13 28753186 28753379 -73119790 - L1MEc LINE L1 -3001 3214 3055 2133 99 0 0 chr13 28753379 28753695 -73119474 - AluSg SINE Alu 0 316 1 685 242 215 44 chr13 28753695 28753803 -73119366 - L1MEc LINE L1 -3160 3055 2760 789 232 150 29 chr13 28753915 28754324 -73118845 - L1MEc LINE L1 -3625 2590 2162 1833 108 17 61 chr13 28754324 28754665 -73118504 - AluSx SINE Alu 0 328 1 789 232 150 29 chr13 28754665 28754731 -73118438 - L1MEc LINE L1 -4053 2162 2105 742 240 24 10 chr13 28754750 28754958 -73118211 - L1MD3 LINE L1 -8 7987 7777 466 288 7 7 chr13 28754979 28755118 -73118051 - L1MEc LINE L1 -4580 1816 1678 786 161 88 20 chr13 28755204 28755441 -73117728 + L1MCa LINE L1 2269 2560 -3950 494 303 53 54 chr13 28755617 28756051 -73117118 - L1M2a LINE L1 -5328 883 10 2270 66 0 26 chr13 28757290 28757593 -73115576 + AluY SINE Alu 1 295 -16 1629 137 109 11 chr13 28757647 28757931 -73115238 + AluJb SINE Alu 1 312 0 326 41 0 41 chr13 28757934 28757983 -73115186 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 188 347 116 0 chr13 28758348 28758443 -73114726 + L2 LINE L2 2957 3062 -251 29 47 0 0 chr13 28759539 28759582 -73113587 + AT_rich Low_complexity Low_complexity 1 43 0 291 345 34 47 chr13 28759808 28759956 -73113213 + L2 LINE L2 3122 3267 -5 426 344 31 18 chr13 28760255 28760479 -73112690 - L1M4 LINE L1 -743 5403 5177 748 282 95 12 chr13 28761711 28761952 -73111217 + MIR SINE MIR 2 262 0 2482 63 0 0 chr13 28762263 28762582 -73110587 + L1PA5 LINE L1 5830 6148 -6 27 29 0 0 chr13 28762664 28762698 -73110471 + AT_rich Low_complexity Low_complexity 1 34 0 477 0 0 0 chr13 28762789 28762842 -73110327 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2287 96 0 0 chr13 28762890 28763193 -73109976 + AluSx SINE Alu 1 303 -9 188 132 0 26 chr13 28763206 28763235 -73109934 + (CA)n Simple_repeat Simple_repeat 2 31 -7 1785 146 29 38 chr13 28763235 28763550 -73109619 - AluSx SINE Alu 0 312 1 188 132 0 26 chr13 28763550 28763558 -73109611 + (CA)n Simple_repeat Simple_repeat 31 38 0 252 279 0 0 chr13 28763839 28763900 -73109269 + L2 LINE L2 3241 3301 -12 215 31 31 0 chr13 28764092 28764124 -73109045 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1408 217 3 7 chr13 28764368 28764654 -73108515 + AluJo SINE Alu 4 288 -24 22 0 0 0 chr13 28764655 28764677 -73108492 + AT_rich Low_complexity Low_complexity 1 22 0 227 320 78 23 chr13 28765272 28765400 -73107769 + MIR SINE MIR 19 153 -109 389 244 38 50 chr13 28765409 28765569 -73107600 - MER104 DNA Tc2 -4 176 19 313 209 90 0 chr13 28767248 28767315 -73105854 + LTR33A LTR ERVL 446 518 -5 34 0 0 0 chr13 28767790 28767824 -73105345 + AT_rich Low_complexity Low_complexity 1 34 0 335 253 84 76 chr13 28767846 28768095 -73105074 + L1ME1 LINE L1 3011 3261 -2885 3973 228 46 26 chr13 28768179 28769235 -73103934 - Tigger6a DNA MER2_type 0 1083 6 1814 267 50 35 chr13 28769628 28771084 -73102085 + L1ME1 LINE L1 4608 6116 -50 294 29 0 0 chr13 28771084 28771119 -73102050 + (TA)n Simple_repeat Simple_repeat 1 35 0 520 239 99 0 chr13 28771119 28771164 -73102005 + L1MA10 LINE L1 6292 6331 -3 21 82 0 0 chr13 28771225 28771274 -73101895 + AT_rich Low_complexity Low_complexity 1 49 0 208 333 0 0 chr13 28771568 28771619 -73101550 - L2 LINE L2 -5 3267 3217 964 207 13 30 chr13 28772037 28772274 -73100895 - AluJo SINE Alu -30 282 50 1033 335 75 13 chr13 28774904 28775378 -73097791 - L2 LINE L2 -30 3283 2779 187 345 0 12 chr13 28775862 28775946 -73097223 - L2 LINE L2 -90 3223 3141 25 51 0 0 chr13 28776740 28776779 -73096390 + AT_rich Low_complexity Low_complexity 1 39 0 270 106 0 0 chr13 28777529 28777576 -73095593 + (AATTG)n Simple_repeat Simple_repeat 3 49 0 42 36 0 0 chr13 28777644 28777700 -73095469 + AT_rich Low_complexity Low_complexity 1 56 0 2026 130 10 0 chr13 28778080 28778388 -73094781 - AluSx SINE Alu -1 311 1 183 42 0 0 chr13 28778440 28778464 -73094705 + (TA)n Simple_repeat Simple_repeat 2 25 0 263 59 0 0 chr13 28779169 28779203 -73093966 - HERVL LTR ERVL -5383 271 238 433 373 39 39 chr13 28780326 28780715 -73092454 + L2 LINE L2 2401 2789 -525 25 0 0 0 chr13 28781878 28781903 -73091266 + AT_rich Low_complexity Low_complexity 1 25 0 378 0 0 0 chr13 28782087 28782129 -73091040 + (CA)n Simple_repeat Simple_repeat 2 43 0 596 303 5 21 chr13 28782133 28782321 -73090848 + MIR SINE MIR 30 214 -48 25051 57 12 11 chr13 28782826 28786063 -73087106 - HERV17 LTR ERV1 -5385 3241 1 5687 65 15 36 chr13 28786063 28786860 -73086309 - LTR17 LTR ERV1 0 780 1 698 226 58 13 chr13 28786860 28787050 -73086119 - L1M2 LINE L1 -743 5403 5297 28 86 0 0 chr13 28787424 28787494 -73085675 + AT_rich Low_complexity Low_complexity 1 70 0 306 223 0 106 chr13 28787638 28787732 -73085437 + HAL1b LINE L1 793 876 -472 3196 84 35 0 chr13 28788152 28788582 -73084587 + MLT2A2 LTR ERVL 1 445 -8 2817 168 29 8 chr13 28788841 28789507 -73083662 - L1P5 LINE L1 -379 5775 5100 694 271 83 41 chr13 28789537 28789803 -73083366 + MLT1C LTR MaLR 191 467 0 509 370 74 21 chr13 28789908 28790422 -73082747 + L2 LINE L2 1168 1708 -1606 1827 157 26 3 chr13 28791402 28791746 -73081423 + L1MA5 LINE L1 5949 6300 0 25 90 0 0 chr13 28791801 28791868 -73081301 + AT_rich Low_complexity Low_complexity 1 67 0 24 32 0 0 chr13 28792014 28792045 -73081124 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 28792704 28792727 -73080442 + AT_rich Low_complexity Low_complexity 1 23 0 285 197 8 49 chr13 28792751 28792873 -73080296 + (TAAA)n Simple_repeat Simple_repeat 2 118 0 22 35 0 0 chr13 28792939 28792968 -73080201 + AT_rich Low_complexity Low_complexity 1 29 0 281 235 61 10 chr13 28793182 28793280 -73079889 - LTR16A LTR ERVL -105 345 243 1048 161 0 0 chr13 28793282 28793450 -73079719 - AluSq SINE Alu -10 303 136 494 118 0 0 chr13 28793454 28793530 -73079639 + AluSq/x SINE Alu 39 114 -198 686 215 6 35 chr13 28793718 28793890 -73079279 - MER3 DNA MER1_type -41 168 2 180 328 52 0 chr13 28794004 28794062 -73079107 - L2 LINE L2 -248 3065 3005 262 396 29 0 chr13 28794190 28794329 -73078840 - L2 LINE L2 -441 2873 2731 1767 178 18 12 chr13 28794697 28795029 -73078140 + MLT1B LTR MaLR 57 390 0 28 71 0 0 chr13 28795101 28795157 -73078012 + AT_rich Low_complexity Low_complexity 1 56 0 35 71 0 0 chr13 28795195 28795265 -73077904 + AT_rich Low_complexity Low_complexity 1 70 0 525 154 0 0 chr13 28795671 28795762 -73077407 - L1MA8 LINE L1 -12 6279 6189 2668 7 0 3 chr13 28796762 28797059 -73076110 - AluYa5 SINE Alu -15 296 1 186 206 111 16 chr13 28797391 28797454 -73075715 + MIR SINE MIR 84 152 -110 1130 234 60 18 chr13 28797558 28797840 -73075329 + AluJo SINE Alu 1 294 -8 3054 221 42 11 chr13 28797992 28798104 -73075065 - L1MA9 LINE L1 -38 6274 6167 198 118 0 0 chr13 28798104 28798138 -73075031 + (TG)n Simple_repeat Simple_repeat 1 34 0 3054 221 42 11 chr13 28798138 28798787 -73074382 - L1MA9 LINE L1 -145 6167 5489 5791 60 14 36 chr13 28798787 28799585 -73073584 - LTR17 LTR ERV1 0 780 1 2362 52 14 0 chr13 28799585 28799873 -73073296 - HERV17 LTR ERV1 0 8626 8335 294 51 0 0 chr13 28799863 28799902 -73073267 - HERV17 LTR ERV1 -1078 7548 7510 * 3978 45 4 0 chr13 28799895 28800378 -73072791 - HERV17 LTR ERV1 -2607 6019 5535 548 0 0 0 chr13 28800375 28800436 -73072733 - HERV17 LTR ERV1 -3026 5600 5540 * 6105 38 19 0 chr13 28800421 28801164 -73072005 - HERV17 LTR ERV1 -2926 5700 4944 585 76 0 0 chr13 28802532 28802611 -73070558 + (GAA)n Simple_repeat Simple_repeat 1 79 0 29 60 0 0 chr13 28803343 28803393 -73069776 + AT_rich Low_complexity Low_complexity 1 50 0 24 77 0 0 chr13 28803639 28803691 -73069478 + AT_rich Low_complexity Low_complexity 1 52 0 2071 113 0 27 chr13 28804541 28804842 -73068327 - AluSg SINE Alu -17 293 1 304 240 30 50 chr13 28805188 28805288 -73067881 - MIR SINE MIR -34 228 131 369 238 76 23 chr13 28805725 28805897 -73067272 + MER113 DNA MER1_type? 37 217 -304 514 335 68 49 chr13 28805906 28806359 -73066810 + L1ME LINE L1 147 608 -5597 260 238 24 0 chr13 28806787 28806871 -73066298 + L1ME LINE L1 854 939 -5266 671 309 81 29 chr13 28806923 28807718 -73065451 + L1ME LINE L1 1686 2521 -3875 469 202 20 0 chr13 28808729 28808828 -73064341 - FRAM SINE Alu -15 161 61 2096 116 51 40 chr13 28809048 28809418 -73063751 - THE1C LTR MaLR -1 374 1 346 302 70 80 chr13 28811072 28811446 -73061723 + L2 LINE L2 2158 2527 -787 238 48 95 24 chr13 28811684 28811726 -73061443 - MLT2A2 LTR ERVL 0 453 409 456 104 0 0 chr13 28811726 28811793 -73061376 + (TG)n Simple_repeat Simple_repeat 2 68 0 2160 142 0 0 chr13 28812424 28812727 -73060442 - AluSx SINE Alu -9 303 1 683 221 28 11 chr13 28812772 28812953 -73060216 - L1MA8 LINE L1 -41 6250 6067 186 133 0 0 chr13 28814391 28814421 -73058748 + (T)n Simple_repeat Simple_repeat 1 30 0 2367 78 7 0 chr13 28814441 28814747 -73058422 - AluY SINE Alu -3 308 1 186 43 0 0 chr13 28814765 28814788 -73058381 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 221 327 107 24 chr13 28815248 28815429 -73057740 + MIR3 SINE MIR 35 229 -33 498 130 0 0 chr13 28815831 28815908 -73057261 - L1PA12 LINE L1 -16 6152 6076 187 420 0 0 chr13 28817658 28817739 -73055430 - MIR SINE MIR -78 130 50 318 186 41 21 chr13 28820432 28820529 -73052640 - L1MC4a LINE L1 -546 7262 7164 1055 174 30 25 chr13 28820695 28820896 -73052273 - MER67C LTR ERV1 -307 403 202 * 2085 161 14 6 chr13 28820874 28821235 -73051934 - THE1C LTR MaLR -11 364 1 9218 118 29 67 chr13 28821235 28822878 -73050291 - THE1C-int LTR MaLR 0 1580 1 2396 118 16 11 chr13 28822878 28823251 -73049918 - THE1C LTR MaLR 0 375 1 1779 269 161 37 chr13 28823461 28824605 -73048564 - L1MC4a LINE L1 -729 7079 5794 21 36 0 0 chr13 28824764 28824792 -73048377 + AT_rich Low_complexity Low_complexity 1 28 0 989 154 22 22 chr13 28824830 28825012 -73048157 + MER61A LTR ERV1 162 343 0 204 40 0 0 chr13 28825946 28825971 -73047198 + (CA)n Simple_repeat Simple_repeat 2 26 0 288 154 0 0 chr13 28826007 28826059 -73047110 + (TA)n Simple_repeat Simple_repeat 2 53 0 981 278 126 12 chr13 28826656 28826990 -73046179 - MSTD LTR MaLR 0 396 25 201 39 0 0 chr13 28827002 28827028 -73046141 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5041 107 7 13 chr13 28827038 28827793 -73045376 - L1PB2 LINE L1 -2 6149 5400 5490 248 98 44 chr13 28827834 28829478 -73043691 - MSTD-int LTR MaLR 0 1735 2 1257 256 54 31 chr13 28829481 28829868 -73043301 - MSTD LTR MaLR 0 396 1 1824 154 0 4 chr13 28830003 28830305 -73042864 + AluSx SINE Alu 20 312 0 429 349 77 10 chr13 28830461 28830656 -73042513 - MIR SINE MIR -24 238 31 5138 61 10 15 chr13 28831544 28832760 -73040409 - L1PA6 LINE L1 -228 5926 4720 258 217 33 0 chr13 28834129 28834189 -73038980 + GA-rich Low_complexity Low_complexity 3 64 0 371 91 0 0 chr13 28834236 28834291 -73038878 + L1MA3 LINE L1 6241 6295 -10 1765 65 5 0 chr13 28834474 28834691 -73038478 + AluY SINE Alu 87 304 -7 387 330 138 21 chr13 28834721 28834909 -73038260 + MIR SINE MIR 52 261 -1 23 33 0 0 chr13 28835201 28835231 -73037938 + AT_rich Low_complexity Low_complexity 1 30 0 303 71 0 0 chr13 28835785 28835827 -73037342 + (CAT)n Simple_repeat Simple_repeat 2 43 0 2212 140 39 3 chr13 28836187 28836572 -73036597 - Tigger3b DNA MER2_type -577 654 256 26 0 0 0 chr13 28837184 28837210 -73035959 + AT_rich Low_complexity Low_complexity 1 26 0 28 29 0 0 chr13 28837660 28837695 -73035474 + AT_rich Low_complexity Low_complexity 1 35 0 456 322 33 41 chr13 28838340 28838585 -73034584 + MIR SINE MIR 19 261 -1 309 245 0 0 chr13 28839541 28839643 -73033526 + CT-rich Low_complexity Low_complexity 3 104 0 351 276 108 63 chr13 28839712 28839898 -73033271 - MLT1L LTR MaLR -31 584 408 1975 134 24 46 chr13 28839898 28840270 -73032899 + THE1B LTR MaLR 1 364 0 351 276 108 63 chr13 28840270 28840457 -73032712 - MLT1L LTR MaLR -207 408 110 970 227 129 98 chr13 28841764 28842244 -73030925 + MLT1D-int LTR MaLR 877 1371 0 1196 269 80 23 chr13 28842244 28842720 -73030449 + MLT1D LTR MaLR 1 503 -2 1067 210 44 0 chr13 28842734 28842939 -73030230 + AluJb SINE Alu 87 300 -12 1252 252 104 68 chr13 28843115 28843973 -73029196 + L1MC/D LINE L1 4264 5152 -994 450 162 0 0 chr13 28843985 28844053 -73029116 + Tigger2 DNA MER2_type 1 68 -2650 * 2182 146 36 36 chr13 28844044 28844490 -73028679 + Tigger2 DNA MER2_type 2273 2718 0 456 213 8 8 chr13 28844490 28844612 -73028557 + L1MC/D LINE L1 5361 5482 -877 333 0 0 0 chr13 28845584 28845621 -73027548 + (TA)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr13 28845857 28845887 -73027282 + AT_rich Low_complexity Low_complexity 1 30 0 333 0 0 0 chr13 28846081 28846118 -73027051 + (TTA)n Simple_repeat Simple_repeat 2 38 0 10167 233 64 32 chr13 28846118 28849482 -73023687 - L1MB1 LINE L1 -11 5981 2725 2819 187 70 36 chr13 28849482 28850241 -73022928 + LTR1 LTR ERV1 1 785 0 1613 119 16 0 chr13 28850241 28850492 -73022677 - AluSx SINE Alu -57 255 1 10167 233 64 32 chr13 28850492 28852532 -73020637 - L1MB1 LINE L1 -3267 2725 716 279 0 0 0 chr13 28852532 28852563 -73020606 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10167 233 64 32 chr13 28852563 28853302 -73019867 - L1MB1 LINE L1 -5276 716 2 1844 130 11 7 chr13 28853875 28854160 -73019009 + AluSx SINE Alu 1 286 -26 2333 90 3 0 chr13 28854202 28854512 -73018657 + AluY SINE Alu 1 311 0 25 51 0 0 chr13 28855218 28855257 -73017912 + AT_rich Low_complexity Low_complexity 1 39 0 2122 138 0 0 chr13 28855739 28856051 -73017118 + AluSx SINE Alu 1 312 0 378 20 41 0 chr13 28856072 28856121 -73017048 - AluY SINE Alu -8 294 244 1391 38 0 0 chr13 28856121 28856279 -73016890 - AluY SINE Alu -144 167 10 34 24 0 0 chr13 28856301 28856342 -73016827 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 28856803 28856828 -73016341 + AT_rich Low_complexity Low_complexity 1 25 0 897 325 49 41 chr13 28856861 28857439 -73015730 - L2 LINE L2 -26 3287 2700 1382 188 17 31 chr13 28857439 28857732 -73015437 + AluJo SINE Alu 1 289 -23 897 325 49 41 chr13 28857732 28857837 -73015332 - L2 LINE L2 -613 2700 2597 523 318 124 22 chr13 28859775 28860090 -73013079 + MLT1J1 LTR MaLR 99 445 -1 23 0 0 0 chr13 28860581 28860604 -73012565 + AT_rich Low_complexity Low_complexity 1 23 0 4073 189 13 8 chr13 28860667 28861500 -73011669 + L1MC1 LINE L1 5491 6327 -6 324 102 0 0 chr13 28861503 28861552 -73011617 + (CA)n Simple_repeat Simple_repeat 2 50 0 1546 274 132 23 chr13 28863014 28863710 -73009459 - L1ME3A LINE L1 -22 6148 5377 9671 197 28 73 chr13 28863730 28865116 -73008053 - LTR48B-int LTR ERV1 -2532 3799 2576 2320 72 3 3 chr13 28865116 28865409 -73007760 - AluSg SINE Alu -17 293 1 9671 197 28 73 chr13 28865409 28866562 -73006607 - LTR48B-int LTR ERV1 -3755 2576 1373 359 153 0 59 chr13 28866646 28866731 -73006438 - LTR48B-int LTR ERV1 -4953 1378 1299 * 2855 169 37 58 chr13 28866730 28867836 -73005333 - LTR48B-int LTR ERV1 -3264 1616 1 1776 231 96 38 chr13 28867839 28868446 -73004723 - LTR48B LTR ERV1 -1 643 2 749 133 215 0 chr13 28868449 28868607 -73004562 - L1MB1 LINE L1 -81 6108 5917 199 356 8 42 chr13 28869300 28869336 -73003833 + MIR SINE MIR 32 68 -140 1867 158 6 3 chr13 28869336 28869647 -73003522 - AluJb SINE Alu 0 312 1 199 356 8 42 chr13 28869647 28869728 -73003441 + MIR SINE MIR 68 145 -63 215 0 0 62 chr13 28869795 28869827 -73003342 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 22 35 0 0 chr13 28869867 28869896 -73003273 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr13 28870143 28870174 -73002995 + AT_rich Low_complexity Low_complexity 1 31 0 504 299 89 41 chr13 28870271 28870562 -73002607 - MLT1I LTR MaLR -42 367 63 193 197 30 0 chr13 28871761 28871827 -73001342 + CT-rich Low_complexity Low_complexity 2 69 0 22 0 0 0 chr13 28871858 28871880 -73001289 + AT_rich Low_complexity Low_complexity 1 22 0 2136 111 7 19 chr13 28874422 28874729 -72998440 - AluSx SINE Alu -9 303 1 37 23 0 0 chr13 28874744 28874788 -72998381 + AT_rich Low_complexity Low_complexity 1 44 0 379 314 76 81 chr13 28875912 28876282 -72996887 + MLT1K LTR MaLR 208 575 -13 499 261 79 30 chr13 28876318 28876647 -72996522 + L1MC4 LINE L1 7695 8039 -3 1095 214 0 0 chr13 28877929 28878130 -72995039 - AluJo SINE Alu -25 287 87 212 218 0 36 chr13 28878217 28878272 -72994897 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr13 28878499 28878520 -72994649 + AT_rich Low_complexity Low_complexity 1 21 0 1350 226 32 32 chr13 28878741 28879086 -72994083 - MLT1A1 LTR MaLR 0 365 21 1357 186 83 11 chr13 28879089 28879401 -72993768 - MER61B LTR ERV1 0 425 1 290 80 20 0 chr13 28881076 28881126 -72992043 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1846 127 62 4 chr13 28881128 28881403 -72991766 - AluSx SINE Alu -21 291 1 2838 7 0 0 chr13 28882157 28882463 -72990706 + AluYa5 SINE Alu 1 306 -5 21 0 0 0 chr13 28883972 28883993 -72989176 + AT_rich Low_complexity Low_complexity 1 21 0 3207 147 0 0 chr13 28884473 28884970 -72988199 + LOR1a LTR ERV1 1 497 0 249 57 0 0 chr13 28886930 28886965 -72986204 + (TG)n Simple_repeat Simple_repeat 1 35 0 2018 190 67 9 chr13 28887630 28888066 -72985103 + LOR1b LTR ERV1 1 461 0 268 209 38 139 chr13 28888734 28888892 -72984277 - L1ME2 LINE L1 -21 6143 6002 2437 184 31 69 chr13 28888950 28889558 -72983611 + MER34C LTR ERV1 1 585 0 333 193 157 0 chr13 28889560 28889643 -72983526 - L1ME2 LINE L1 -205 5959 5864 2405 175 110 69 chr13 28890141 28890839 -72982330 - LTR8A LTR ERV1 0 727 1 1066 265 69 48 chr13 28890854 28891291 -72981878 + LTR16A1 LTR ERVL 4 449 -8 3172 150 19 15 chr13 28891460 28892048 -72981121 - LTR49 LTR ERV1 -3 592 3 205 281 16 49 chr13 28892064 28892249 -72980920 + T-rich Low_complexity Low_complexity 2 180 0 845 128 0 15 chr13 28892396 28892529 -72980640 + MER41C LTR ERV1 1 131 -423 * 992 180 95 5 chr13 28892520 28892731 -72980438 + LTR1B LTR ERV1 597 826 0 1432 242 81 5 chr13 28892968 28893332 -72979837 + MLT2B1 LTR ERVL 1 397 -67 1009 148 25 6 chr13 28893382 28893544 -72979625 - LTR29 LTR ERV1 -3 619 455 1918 191 5 23 chr13 28893547 28893934 -72979235 - MER67D LTR ERV1 -123 391 12 366 283 9 35 chr13 28894223 28894336 -72978833 - MIR3 SINE MIR -39 169 60 4639 139 60 36 chr13 28894921 28895803 -72977366 + MER4D LTR ERV1 1 903 0 2232 124 14 30 chr13 28895850 28896220 -72976949 - THE1B LTR MaLR 0 364 1 11586 100 2 1 chr13 28896220 28897797 -72975372 - THE1B-int LTR MaLR 0 1580 1 2129 136 8 37 chr13 28897797 28898172 -72974997 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr13 28898226 28898254 -72974915 + AT_rich Low_complexity Low_complexity 1 28 0 215 206 0 44 chr13 28898846 28898914 -72974255 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1304 133 10 0 chr13 28899142 28899345 -72973824 - MER54B LTR ERVL -1 792 588 826 224 12 0 chr13 28899337 28899502 -72973667 - MER54B LTR ERVL -515 278 112 * 1333 217 93 3 chr13 28899502 28899901 -72973268 + MER66A LTR ERV1 1 478 0 714 179 9 0 chr13 28899901 28900013 -72973156 - MER54B LTR ERVL -678 115 3 2364 94 0 0 chr13 28900193 28900490 -72972679 - AluY SINE Alu -14 297 1 28 79 0 0 chr13 28900725 28900788 -72972381 + AT_rich Low_complexity Low_complexity 1 63 0 21 71 0 0 chr13 28901068 28901110 -72972059 + AT_rich Low_complexity Low_complexity 1 42 0 7879 112 4 4 chr13 28901118 28902290 -72970879 + L1P LINE L1 1726 2897 -3249 21 0 0 0 chr13 28902457 28902478 -72970691 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr13 28902525 28902589 -72970580 + AT_rich Low_complexity Low_complexity 1 64 0 68 42 0 0 chr13 28902676 28902772 -72970397 + AT_rich Low_complexity Low_complexity 1 96 0 1572 223 54 82 chr13 28903328 28904306 -72968863 - L1MD2 LINE L1 -13 6346 5245 4814 100 43 35 chr13 28904306 28905079 -72968090 - LTR19C LTR ERV1 0 779 1 1572 223 54 82 chr13 28905079 28905653 -72967516 - L1MD2 LINE L1 -1114 5245 4657 21 36 0 0 chr13 28906179 28906207 -72966962 + AT_rich Low_complexity Low_complexity 1 28 0 1298 192 80 17 chr13 28906496 28906783 -72966386 - AluJb SINE Alu -7 305 1 2122 125 0 7 chr13 28906871 28907168 -72966001 + AluSg SINE Alu 1 295 -15 1101 200 4 0 chr13 28907190 28907420 -72965749 + L1 LINE L1 4507 4737 -1409 3194 151 27 7 chr13 28907565 28908121 -72965048 + Tigger3(Golem) DNA MER2_type 2463 3029 0 222 372 41 8 chr13 28908506 28908627 -72964542 - L2 LINE L2 -547 2767 2643 2217 117 0 7 chr13 28908655 28908963 -72964206 + AluSq SINE Alu 1 306 -7 717 187 80 0 chr13 28908986 28909136 -72964033 + pTR5 LTR ERV1 1415 1576 -862 1380 76 0 0 chr13 28909137 28909322 -72963847 + HERVFH21 LTR ERV1 2107 2291 -4238 * 7650 209 80 79 chr13 28909319 28909766 -72963403 + HERVFH21 LTR ERV1 3074 3519 -3010 4931 101 8 10 chr13 28909766 28910489 -72962680 + LTR30 LTR ERV1 1 722 0 7650 209 80 79 chr13 28910489 28912822 -72960347 + HERVFH21 LTR ERV1 3519 5860 -669 6190 78 17 4 chr13 28912822 28913637 -72959532 - LTR12 LTR ERV1 0 826 1 7650 209 80 79 chr13 28913637 28914308 -72958861 + HERVFH21 LTR ERV1 5860 6529 0 2075 126 102 42 chr13 28914310 28914714 -72958455 + LTR21A LTR ERV1 62 489 -16 3561 203 79 29 chr13 28914785 28915593 -72957576 + MER21B LTR ERV1 1 849 -14 186 346 73 29 chr13 28915695 28915831 -72957338 + L2 LINE L2 2439 2580 -734 342 200 7 44 chr13 28916076 28916189 -72956980 - L1MC4 LINE L1 -1339 6983 1996 301 333 0 0 chr13 28916170 28916260 -72956909 - L1MC4 LINE L1 -1339 6703 6614 * 358 282 29 109 chr13 28916447 28916621 -72956548 - MLT1J LTR MaLR -259 252 93 344 294 27 14 chr13 28917379 28917525 -72955644 + LTR68 LTR ERV1 3 150 -590 419 255 68 52 chr13 28917554 28917746 -72955423 + LTR68 LTR ERV1 237 431 -309 3171 157 26 0 chr13 28918047 28918587 -72954582 - MER41C LTR ERV1 0 554 1 2007 127 0 36 chr13 28918882 28919189 -72953980 - AluSq SINE Alu -17 296 1 375 302 202 26 chr13 28919383 28919734 -72953435 - MLT1J LTR MaLR -1 510 98 1922 100 89 4 chr13 28920034 28920303 -72952866 - AluSx SINE Alu -20 292 1 1090 304 137 24 chr13 28920336 28921013 -72952156 - L2 LINE L2 -1056 2258 1505 1281 237 25 80 chr13 28921085 28921524 -72951645 - MLT1C LTR MaLR 0 467 53 2089 130 3 3 chr13 28922339 28922640 -72950529 + AluSg SINE Alu 1 301 -9 2179 211 73 6 chr13 28925427 28925976 -72947193 - L1MB7 LINE L1 -10 6174 5589 858 276 52 41 chr13 28926023 28926080 -72947089 - MER74B LTR ERVL -74 548 493 2036 128 174 8 chr13 28926080 28926447 -72946722 - MSTA LTR MaLR 0 428 1 858 276 52 41 chr13 28926447 28926751 -72946418 - MER74B LTR ERVL -129 493 183 4148 165 18 11 chr13 28926766 28927843 -72945326 + L1MA4 LINE L1 4895 5980 -320 1269 147 135 36 chr13 28928057 28928309 -72944860 + AluJo SINE Alu 6 282 -30 25 51 0 0 chr13 28928309 28928348 -72944821 + AT_rich Low_complexity Low_complexity 1 39 0 477 280 18 0 chr13 28928439 28928607 -72944562 + L1ME1 LINE L1 4936 5106 -1040 249 247 94 0 chr13 28928734 28928819 -72944350 + L1ME1 LINE L1 5328 5420 -750 21 0 0 0 chr13 28928829 28928850 -72944319 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 28929525 28929560 -72943609 + AT_rich Low_complexity Low_complexity 1 35 0 320 273 37 64 chr13 28929566 28929753 -72943416 + L1ME LINE L1 663 844 -5226 2478 55 0 26 chr13 28929874 28930184 -72942985 + AluY SINE Alu 1 302 -9 772 317 57 21 chr13 28930274 28930801 -72942368 - L1ME3A LINE L1 -227 5943 5398 23 33 0 0 chr13 28930952 28930982 -72942187 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 28931268 28931289 -72941880 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 28931634 28931660 -72941509 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr13 28931919 28931954 -72941215 + AT_rich Low_complexity Low_complexity 1 35 0 385 282 78 33 chr13 28932306 28932551 -72940618 + L1ME1 LINE L1 5457 5712 -409 1064 227 92 22 chr13 28932678 28933035 -72940134 + L1ME1 LINE L1 5779 6160 -6 16337 85 1 7 chr13 28934104 28936398 -72936771 - L1P LINE L1 -1412 4734 2456 1560 136 105 14 chr13 28936398 28936692 -72936477 + MER9 LTR ERVK 191 511 0 4362 106 10 32 chr13 28936692 28937369 -72935800 + HERVK9 LTR ERVK 1 662 -5254 8721 78 0 0 chr13 28937369 28938495 -72934674 + HERVK9 LTR ERVK 1625 2750 -3166 5431 163 21 5 chr13 28938509 28939446 -72933723 - L1P LINE L1 -5184 962 11 951 155 0 58 chr13 28939455 28939662 -72933507 + L1MA4A LINE L1 6104 6298 -5 11121 224 22 27 chr13 28939987 28942107 -72931062 - L1P4 LINE L1 -730 6139 4009 213 39 0 0 chr13 28942107 28942133 -72931036 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1990 157 0 0 chr13 28942137 28942424 -72930745 - AluSx SINE Alu -25 287 1 11121 224 22 27 chr13 28942424 28942715 -72930454 - L1P4 LINE L1 -2863 4006 3715 1689 212 0 0 chr13 28942715 28943017 -72930152 - AluJb SINE Alu -10 302 1 11121 224 22 27 chr13 28943017 28943879 -72929290 - L1P4 LINE L1 -3154 3715 2879 9588 194 11 18 chr13 28943883 28945603 -72927566 - L1P4 LINE L1 -5127 1722 16 186 43 0 0 chr13 28945610 28945633 -72927536 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3208 244 43 21 chr13 28945634 28946080 -72927089 - L1MEc LINE L1 -1377 5267 4833 1250 242 35 0 chr13 28946080 28946365 -72926804 - AluJo SINE Alu -15 297 3 3208 244 43 21 chr13 28946365 28947113 -72926056 - L1MEc LINE L1 -1811 4833 4046 276 89 44 0 chr13 28947128 28947173 -72925996 + AluJ/FLAM SINE Alu 12 58 -244 2234 96 3 0 chr13 28947274 28947556 -72925613 + AluSq SINE Alu 12 294 -19 3217 267 39 46 chr13 28947556 28948049 -72925120 - L1MEc LINE L1 -2589 4055 3560 1747 180 0 26 chr13 28948049 28948354 -72924815 - AluSx SINE Alu -13 299 3 3217 267 39 46 chr13 28948354 28949102 -72924067 - L1MEc LINE L1 -3084 3560 2808 2026 128 17 0 chr13 28949102 28949392 -72923777 - AluSx SINE Alu -17 295 1 3217 267 39 46 chr13 28949392 28949827 -72923342 - L1MEc LINE L1 -3836 2808 2442 1536 206 11 7 chr13 28949827 28950138 -72923031 - AluJo SINE Alu 0 312 1 3217 267 39 46 chr13 28950138 28950528 -72922641 - L1MEc LINE L1 -4202 2442 2051 2679 246 50 64 chr13 28950530 28950782 -72922387 - L1MEc LINE L1 -5471 1071 817 2310 75 0 3 chr13 28950782 28951074 -72922095 + AluY SINE Alu 1 291 -20 2679 246 50 64 chr13 28951074 28951612 -72921557 - L1MEc LINE L1 -5725 817 297 2403 45 3 0 chr13 28951612 28951898 -72921271 - AluY SINE Alu -24 287 1 2679 246 50 64 chr13 28951898 28952177 -72920992 - L1MEc LINE L1 -6245 297 16 30 27 0 0 chr13 28952271 28952308 -72920861 + AT_rich Low_complexity Low_complexity 1 37 0 33 43 0 0 chr13 28952695 28952742 -72920427 + AT_rich Low_complexity Low_complexity 1 47 0 626 283 7 0 chr13 28953531 28953676 -72919493 - LTR33 LTR ERVL -340 181 36 775 315 24 20 chr13 28954019 28954311 -72918858 - MLT2E LTR ERVL -15 613 321 353 333 96 6 chr13 28954310 28954485 -72918684 - MLT2E LTR ERVL -414 214 24 1464 194 70 32 chr13 28954485 28954762 -72918407 - MLT1A1 LTR MaLR 0 365 71 455 99 70 0 chr13 28954762 28954833 -72918336 - MADE1 DNA Mariner 0 80 5 1464 194 70 32 chr13 28954833 28954896 -72918273 - MLT1A1 LTR MaLR -294 71 12 248 327 9 62 chr13 28954999 28955112 -72918057 + L2 LINE L2 3207 3313 0 23 33 0 0 chr13 28955973 28956003 -72917166 + AT_rich Low_complexity Low_complexity 1 30 0 1136 287 142 124 chr13 28957381 28958715 -72914454 - L2 LINE L2 -1 3312 2004 777 256 20 20 chr13 28958715 28958918 -72914251 - MER63A DNA MER1_type -7 203 1 1136 287 142 124 chr13 28958918 28960072 -72913097 - L2 LINE L2 -1309 2004 566 1863 262 37 10 chr13 28960072 28960771 -72912398 + L1MB7 LINE L1 5421 6162 -4 182 260 27 55 chr13 28960791 28960864 -72912305 - L2 LINE L2 -2726 588 518 180 167 0 0 chr13 28960864 28960912 -72912257 + T-rich Low_complexity Low_complexity 1 48 0 1136 303 77 44 chr13 28960913 28961304 -72911865 - L2 LINE L2 -2784 530 119 1539 254 109 8 chr13 28961304 28961772 -72911397 - LTR40a LTR ERVL -2 517 3 1136 303 77 44 chr13 28961772 28961858 -72911311 - L2 LINE L2 -3195 119 37 277 237 64 133 chr13 28962264 28962437 -72910732 + MLT1H LTR MaLR 389 549 0 302 143 0 0 chr13 28962484 28962533 -72910636 - U5 snRNA snRNA -67 49 1 29 70 0 0 chr13 28962777 28962834 -72910335 + AT_rich Low_complexity Low_complexity 1 57 0 2035 160 0 0 chr13 28963263 28963569 -72909600 - AluJb SINE Alu -2 310 5 31 36 0 18 chr13 28964051 28964070 -72909099 + AT_rich Low_complexity Low_complexity 1 19 -36 1627 188 25 7 chr13 28964070 28964347 -72908822 + AluJo SINE Alu 1 282 -30 31 36 0 18 chr13 28964347 28964383 -72908786 + AT_rich Low_complexity Low_complexity 19 55 0 23 92 0 0 chr13 28964450 28964515 -72908654 + AT_rich Low_complexity Low_complexity 1 65 0 279 133 0 0 chr13 28964645 28964690 -72908479 + (TG)n Simple_repeat Simple_repeat 2 46 0 1162 111 5 26 chr13 28965475 28965664 -72907505 - MER30B DNA MER1_type 0 190 6 1005 192 72 110 chr13 28968608 28969028 -72904141 - MER66A LTR ERV1 -52 426 97 603 189 41 16 chr13 28969219 28969341 -72903828 + AluJb SINE Alu 9 133 -179 306 295 97 19 chr13 28970289 28970547 -72902622 - L1ME LINE L1 -361 5760 5483 603 189 41 16 chr13 28972039 28972161 -72901008 + AluJb SINE Alu 9 133 -179 197 376 127 29 chr13 28972509 28972714 -72900455 - L2 LINE L2 -357 2957 2733 377 300 98 40 chr13 28973109 28973501 -72899668 - L1ME LINE L1 -361 5760 5348 1689 107 8 173 chr13 28973921 28974446 -72898723 - LTR21B LTR ERV1 0 438 1 1098 79 0 7 chr13 28974929 28975068 -72898101 - AluSq/x SINE Alu -175 138 1 23 0 0 0 chr13 28975687 28975710 -72897459 + AT_rich Low_complexity Low_complexity 1 23 0 2112 136 0 0 chr13 28975919 28976213 -72896956 + AluSx SINE Alu 3 296 -16 700 236 40 40 chr13 28976265 28976424 -72896745 - LTR16B LTR ERVL -6 458 297 2335 59 10 0 chr13 28976424 28976712 -72896457 + AluY SINE Alu 1 291 -20 700 236 40 40 chr13 28976712 28976777 -72896392 - LTR16B LTR ERVL -166 298 234 1061 211 90 34 chr13 28977020 28977399 -72895770 - Charlie1 DNA MER1_type -17 2744 2345 1278 195 118 39 chr13 28978163 28978552 -72894617 - Charlie5 DNA MER1_type 0 2619 2200 289 206 226 10 chr13 28978530 28978632 -72894537 - Charlie5 DNA MER1_type -2488 124 1 * 672 186 0 0 chr13 28979123 28979252 -72893917 + FLAM_A SINE Alu 5 133 0 1256 181 44 38 chr13 28979474 28979527 -72893642 + MER33 DNA MER1_type 8 59 -2526 2837 75 26 61 chr13 28979527 28979568 -72893601 - MLT2A1 LTR ERVL 0 444 403 524 61 0 37 chr13 28979568 28979650 -72893519 + (TA)n Simple_repeat Simple_repeat 1 79 0 2837 75 26 61 chr13 28979650 28980064 -72893105 - MLT2A1 LTR ERVL -41 403 5 1256 181 44 38 chr13 28980064 28980325 -72892844 + MER33 DNA MER1_type 59 324 0 298 316 110 0 chr13 28981746 28981882 -72891287 - MIR SINE MIR -56 206 56 21 0 0 0 chr13 28981884 28981905 -72891264 + AT_rich Low_complexity Low_complexity 1 21 0 220 196 0 36 chr13 28982266 28982322 -72890847 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 236 318 0 34 chr13 28983326 28983414 -72889755 - MIR3 SINE MIR -34 174 90 1679 175 7 13 chr13 28984245 28984548 -72888621 - AluJo SINE Alu -10 302 2 287 336 95 28 chr13 28984627 28984838 -72888331 - MLT1J LTR MaLR -24 487 263 22 0 0 0 chr13 28985865 28985887 -72887282 + AT_rich Low_complexity Low_complexity 1 22 0 190 319 14 42 chr13 28986514 28986586 -72886583 - L2 LINE L2 -12 3260 3191 1955 110 3 53 chr13 28986759 28987078 -72886091 + AluY SINE Alu 1 303 -8 1915 265 31 77 chr13 28987243 28988232 -72884937 + L1MEc LINE L1 43 986 -5410 1108 240 0 0 chr13 28988236 28988444 -72884725 - Tigger5 DNA MER2_type -2114 209 2 1387 214 0 31 chr13 28988539 28988833 -72884336 - AluJo SINE Alu -27 285 1 21 0 0 0 chr13 28989487 28989508 -72883661 + AT_rich Low_complexity Low_complexity 1 21 0 298 297 55 28 chr13 28989697 28989842 -72883327 - MIR SINE MIR -40 222 74 345 240 0 20 chr13 28990007 28990107 -72883062 - MER103 DNA DNA -65 101 4 22 0 0 0 chr13 28990240 28990262 -72882907 + AT_rich Low_complexity Low_complexity 1 22 0 334 138 86 5 chr13 28990426 28990507 -72882662 - MSTD LTR MaLR -327 69 1 21 0 0 0 chr13 28991181 28991202 -72881967 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 28992042 28992077 -72881092 + AT_rich Low_complexity Low_complexity 1 35 0 510 314 54 27 chr13 28992238 28992461 -72880708 - MIR SINE MIR -8 254 26 194 157 0 20 chr13 28992580 28992631 -72880538 + (TA)n Simple_repeat Simple_repeat 1 50 0 326 275 22 51 chr13 28992912 28993050 -72880119 + L3 LINE CR1 671 804 -773 2172 131 0 6 chr13 28993213 28993525 -72879644 + AluSg SINE Alu 1 310 0 463 322 110 9 chr13 28993818 28994045 -72879124 - MIR SINE MIR 0 262 13 223 279 198 0 chr13 28994682 28994768 -72878401 - L2 LINE L2 -20 3293 3191 204 286 57 0 chr13 28994932 28995002 -72878167 + L2 LINE L2 685 758 -2556 319 344 52 68 chr13 28995258 28995545 -72877624 + L2 LINE L2 2148 2438 -834 647 231 0 0 chr13 28995545 28995675 -72877494 - FLAM_A SINE Alu -3 130 1 319 344 52 68 chr13 28995675 28996226 -72876943 + L2 LINE L2 2438 3048 -224 240 119 119 0 chr13 28997081 28997140 -72876029 - L1ME4a LINE L1 -1 6120 6055 1977 138 34 42 chr13 28997951 28998329 -72874840 - THE1C LTR MaLR 0 375 1 17746 30 8 0 chr13 28998388 29000556 -72872613 - L1P LINE L1 -1560 4586 2401 308 293 67 83 chr13 29001609 29001862 -72871307 - L1M4 LINE L1 -5545 1310 1061 1979 130 81 26 chr13 29001862 29002207 -72870962 - THE1B LTR MaLR 0 364 1 308 293 67 83 chr13 29002207 29002253 -72870916 - L1M4 LINE L1 -5794 1061 1016 189 74 0 0 chr13 29002585 29002612 -72870557 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 287 254 55 41 chr13 29002669 29002828 -72870341 - L1M4 LINE L1 -6383 472 2 2056 112 0 0 chr13 29002842 29003142 -72870027 + AluSx SINE Alu 10 309 0 1353 227 153 5 chr13 29003498 29003930 -72869239 - LTR54B LTR ERV1 -2 496 1 207 0 0 0 chr13 29004822 29004845 -72868324 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr13 29005616 29005639 -72867530 + (T)n Simple_repeat Simple_repeat 1 23 0 213 39 0 0 chr13 29006111 29006137 -72867032 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 486 282 27 16 chr13 29006961 29007126 -72866043 + MLT1J LTR MaLR 109 287 -163 32 26 0 0 chr13 29009069 29009108 -72864061 + AT_rich Low_complexity Low_complexity 1 39 0 293 82 20 0 chr13 29009286 29009335 -72863834 + (TA)n Simple_repeat Simple_repeat 1 50 0 581 301 152 41 chr13 29009349 29009791 -72863378 - L2 LINE L2 -533 2781 2291 1222 200 126 15 chr13 29010208 29010478 -72862691 - AluJb SINE Alu -2 300 1 24 67 0 0 chr13 29010813 29010858 -72862311 + AT_rich Low_complexity Low_complexity 1 45 0 234 0 0 0 chr13 29012540 29012566 -72860603 + (TG)n Simple_repeat Simple_repeat 2 27 0 2364 47 3 7 chr13 29013214 29013514 -72859655 + AluY SINE Alu 1 299 -12 1576 171 19 4 chr13 29063543 29064225 -72808944 - L1 LINE L1 -3483 4082 3347 18319 107 5 1 chr13 29064239 29067759 -72805410 - L1PA7 LINE L1 -6 6463 2934 5687 115 173 4 chr13 29067759 29068868 -72804301 - L1PA7 LINE L1 -4784 1677 1 2940 104 16 16 chr13 29068869 29069359 -72803810 - L1 LINE L1 -4206 3359 2870 744 135 0 68 chr13 29069362 29069495 -72803674 - THE1B LTR MaLR 0 364 241 13367 171 22 9 chr13 29069500 29071756 -72801413 - L1 LINE L1 -5264 2301 17 2439 98 0 0 chr13 29071995 29072302 -72800867 + AluSx SINE Alu 1 307 -5 301 58 39 0 chr13 29072783 29072835 -72800334 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 201 346 118 28 chr13 29074420 29074674 -72798495 - L2 LINE L2 -32 3281 3005 232 297 0 0 chr13 29074956 29075020 -72798149 + (CTA)n Simple_repeat Simple_repeat 1 64 0 511 341 39 5 chr13 29075135 29075343 -72797826 + L2 LINE L2 2676 2890 -424 229 302 142 35 chr13 29075406 29075575 -72797594 + L2 LINE L2 3103 3289 -24 293 349 39 23 chr13 29075746 29075875 -72797294 + MIR SINE MIR 20 150 -58 779 143 119 0 chr13 29077989 29078115 -72795054 - L1P3 LINE L1 -6120 341 201 7037 55 11 1 chr13 29078115 29079503 -72793666 + L1PA8 LINE L1 4768 6165 -7 2847 7 0 0 chr13 29080462 29080769 -72792400 - AluYa5 SINE Alu -4 307 1 532 366 91 40 chr13 29081864 29082866 -72790303 + L2 LINE L2 1098 2234 -1080 432 287 124 13 chr13 29083191 29083495 -72789674 + L1ME3A LINE L1 5188 5518 -646 334 313 46 0 chr13 29083514 29083735 -72789434 + L1ME3A LINE L1 5627 5817 -304 1907 220 43 31 chr13 29084127 29084614 -72788555 + MLT1D LTR MaLR 6 498 -7 237 360 25 25 chr13 29084744 29084810 -72788359 - MIR SINE MIR -8 254 189 558 88 0 0 chr13 29084810 29084890 -72788279 + MADE1 DNA Mariner 1 80 0 237 360 25 25 chr13 29084890 29084984 -72788185 - MIR SINE MIR -72 190 94 24 32 0 0 chr13 29085039 29085070 -72788099 + AT_rich Low_complexity Low_complexity 1 31 0 351 78 0 0 chr13 29085582 29085633 -72787536 + (GA)n Simple_repeat Simple_repeat 2 52 0 470 280 53 34 chr13 29087143 29087350 -72785819 - LTR33 LTR ERVL 0 521 311 192 77 0 0 chr13 29087720 29087746 -72785423 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 825 305 24 4 chr13 29087761 29088007 -72785162 - ERVL LTR ERVL -2319 3445 3195 26 30 0 0 chr13 29088791 29088824 -72784345 + AT_rich Low_complexity Low_complexity 1 33 0 243 269 0 0 chr13 29089077 29089144 -72784025 + (TA)n Simple_repeat Simple_repeat 2 68 0 382 205 0 26 chr13 29089915 29089993 -72783176 - MLT1D LTR MaLR -429 76 1 3148 143 103 48 chr13 29090134 29091227 -72781942 + pTR5 LTR ERV1 6 558 -156 493 310 75 5 chr13 29093721 29093934 -72779235 + MIR SINE MIR 27 254 -8 268 192 48 106 chr13 29095071 29095175 -72777994 - MIR SINE MIR -68 194 97 1198 230 129 59 chr13 29095321 29095777 -72777392 - MLT1D LTR MaLR 0 505 18 29 47 0 0 chr13 29095953 29095996 -72777173 + AT_rich Low_complexity Low_complexity 1 43 0 189 171 0 0 chr13 29096214 29096249 -72776920 + (TA)n Simple_repeat Simple_repeat 1 35 0 675 237 193 55 chr13 29096814 29097249 -72775920 + MLT1D LTR MaLR 3 497 -8 330 288 108 7 chr13 29097258 29097397 -72775772 + HERVL LTR ERVL 2 154 -5500 349 198 18 0 chr13 29097455 29097566 -72775603 + (TA)n Simple_repeat Simple_repeat 2 114 0 1191 258 95 14 chr13 29097613 29098388 -72774781 + HERVL LTR ERVL 294 1164 -4490 3829 185 56 17 chr13 29098389 29099135 -72774034 + MSTB1-int LTR MaLR 877 1651 0 2340 163 34 2 chr13 29099135 29099553 -72773616 + MSTB1 LTR MaLR 1 431 -1 1142 207 38 54 chr13 29099560 29099821 -72773348 + HERVL LTR ERVL 2003 2259 -3505 27 29 0 0 chr13 29099877 29099911 -72773258 + AT_rich Low_complexity Low_complexity 1 34 0 1697 141 27 11 chr13 29100336 29100691 -72772478 + LOR1b-int LTR ERV1 5369 6064 -1086 540 165 0 0 chr13 29100690 29100781 -72772388 + LOR1b-int LTR ERV1 8030 8120 0 * 1974 167 115 14 chr13 29100781 29101200 -72771969 + LOR1b LTR ERV1 1 461 0 23 68 0 0 chr13 29101982 29102026 -72771143 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 29102283 29102304 -72770865 + AT_rich Low_complexity Low_complexity 1 21 0 395 234 15 75 chr13 29102556 29102757 -72770412 + pTR5 LTR ERV1 840 1028 -1410 4402 95 33 158 chr13 29102837 29103780 -72769389 + LTR12 LTR ERV1 2 826 0 783 71 106 0 chr13 29103780 29103893 -72769276 + LTR12 LTR ERV1 590 714 0 21 0 0 0 chr13 29103915 29103936 -72769233 + AT_rich Low_complexity Low_complexity 1 21 0 1616 172 7 21 chr13 29105427 29105712 -72767457 + AluJb SINE Alu 1 281 -31 277 306 53 52 chr13 29106488 29106640 -72766529 + MIR SINE MIR 11 166 -42 565 205 116 0 chr13 29107037 29107149 -72766020 - FLAM_C SINE Alu -18 125 1 241 317 154 82 chr13 29108021 29108437 -72764732 + L2 LINE L2 2826 3271 -1 1017 252 114 32 chr13 29108552 29109038 -72764131 + LTR28 LTR ERV1 1 1232 -137 35 41 0 0 chr13 29109849 29109898 -72763271 + AT_rich Low_complexity Low_complexity 1 49 0 9794 195 37 13 chr13 29109899 29112905 -72760264 - L1PA14 LINE L1 -4 6157 3091 248 278 68 26 chr13 29113050 29113241 -72759928 + HAL1 LINE L1 980 1178 -1329 327 302 74 45 chr13 29113278 29113480 -72759689 + HAL1 LINE L1 1274 1481 -1026 1073 215 90 98 chr13 29113879 29114443 -72758726 + MLT1E1 LTR MaLR 1 585 -8 270 0 0 0 chr13 29114806 29114836 -72758333 + (CA)n Simple_repeat Simple_repeat 1 30 0 389 300 31 38 chr13 29114836 29114996 -72758173 - MIR SINE MIR -74 188 30 1818 165 23 3 chr13 29115901 29116262 -72756907 + MER7A DNA MER2_type 1 346 0 2265 105 0 13 chr13 29116579 29116911 -72756258 + AluSx SINE Alu 1 312 0 1031 193 124 69 chr13 29117571 29117949 -72755220 - MER57A LTR ERV1 -2 401 3 30 100 0 0 chr13 29117988 29118088 -72755081 + AT_rich Low_complexity Low_complexity 1 100 0 7283 163 14 9 chr13 29118101 29120539 -72752630 - L1MA3 LINE L1 0 6305 3856 5914 161 71 42 chr13 29120539 29121825 -72751344 + pTR5 LTR ERV1 743 2065 -373 32 57 0 0 chr13 29122220 29122273 -72750896 + AT_rich Low_complexity Low_complexity 1 53 0 708 218 0 8 chr13 29122409 29122542 -72750627 + FLAM_C SINE Alu 2 133 0 7121 169 146 41 chr13 29122841 29124429 -72748740 + MER52A LTR ERV1 1 1755 0 296 148 16 0 chr13 29124502 29124563 -72748606 + (TA)n Simple_repeat Simple_repeat 1 62 0 478 325 47 71 chr13 29125495 29125962 -72747207 + MLT1J LTR MaLR 15 470 -41 2070 65 0 0 chr13 29126245 29126614 -72746555 - L1PA8 LINE L1 -605 5526 5158 4983 59 3 0 chr13 29126614 29127234 -72745935 + L1PA8 LINE L1 5526 6153 -19 316 337 48 27 chr13 29128399 29128586 -72744583 + MLT1J LTR MaLR 85 275 -236 232 283 0 0 chr13 29129138 29129191 -72743978 + (TG)n Simple_repeat Simple_repeat 2 54 0 216 242 81 16 chr13 29129904 29129966 -72743203 - MIR SINE MIR -13 249 184 243 214 10 20 chr13 29129985 29130083 -72743086 + GA-rich Low_complexity Low_complexity 1 97 0 1892 138 67 14 chr13 29131085 29131441 -72741728 - THE1C LTR MaLR 0 375 1 1994 77 70 14 chr13 29131619 29131906 -72741263 + AluY SINE Alu 1 303 -8 205 171 0 0 chr13 29131910 29131951 -72741218 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 213 196 0 0 chr13 29132767 29132823 -72740346 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 1087 214 74 19 chr13 29132865 29133136 -72740033 - AluJo SINE Alu -2 310 25 321 258 40 24 chr13 29133143 29133267 -72739902 + MLT1J LTR MaLR 51 176 -335 2655 242 83 26 chr13 29133505 29134141 -72739028 - L1ME1 LINE L1 -5 6161 5562 450 0 0 0 chr13 29134141 29134191 -72738978 + (TG)n Simple_repeat Simple_repeat 1 50 0 2655 242 83 26 chr13 29134191 29134304 -72738865 - L1ME1 LINE L1 -604 5562 5457 518 244 0 22 chr13 29134304 29134439 -72738730 + FLAM_C SINE Alu 2 133 0 2655 242 83 26 chr13 29134439 29134489 -72738680 - L1ME1 LINE L1 -709 5457 5411 2306 79 0 13 chr13 29134489 29134792 -72738377 - AluY SINE Alu -12 299 1 2655 242 83 26 chr13 29134792 29134837 -72738332 - L1ME1 LINE L1 -755 5411 5267 203 270 11 11 chr13 29134853 29134942 -72738227 + (TA)n Simple_repeat Simple_repeat 1 89 0 281 280 43 0 chr13 29134960 29135053 -72738116 - L1ME1 LINE L1 -916 5230 5134 538 355 93 49 chr13 29135639 29136397 -72736772 + L2 LINE L2 1947 2880 -433 2128 126 0 0 chr13 29136397 29136698 -72736471 - AluY SINE Alu -10 301 1 538 355 93 49 chr13 29136698 29137153 -72736016 + L2 LINE L2 2880 3313 0 1196 195 103 29 chr13 29137286 29137558 -72735611 - AluJo SINE Alu -9 293 2 195 69 0 0 chr13 29138032 29138061 -72735108 + (TA)n Simple_repeat Simple_repeat 2 30 0 192 269 173 19 chr13 29140248 29140352 -72732817 + MIR SINE MIR 124 243 -19 3396 195 27 1 chr13 29140832 29141541 -72731628 + L1MC1 LINE L1 5607 6333 0 447 328 28 17 chr13 29141552 29141729 -72731440 - LTR33 LTR ERVL -339 182 4 26 0 0 0 chr13 29143698 29143724 -72729445 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr13 29146100 29146134 -72727035 + AT_rich Low_complexity Low_complexity 1 34 0 1064 207 11 19 chr13 29147614 29147880 -72725289 - L1MD3 LINE L1 -1 7994 7731 24 53 0 0 chr13 29147962 29148000 -72725169 + AT_rich Low_complexity Low_complexity 1 38 0 997 251 80 23 chr13 29148333 29148771 -72724398 + LTR37B LTR ERV1 4 466 -2 278 333 44 8 chr13 29149367 29149619 -72723550 - L1ME1 LINE L1 -1487 4659 4399 21 0 0 0 chr13 29150409 29150430 -72722739 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 29150851 29150872 -72722297 + AT_rich Low_complexity Low_complexity 1 21 0 225 322 0 0 chr13 29150918 29150977 -72722192 + L2 LINE L2 3248 3306 -7 488 307 73 28 chr13 29152371 29152806 -72720363 + L1MC/D LINE L1 5366 5820 -722 21 71 0 0 chr13 29153745 29153787 -72719382 + AT_rich Low_complexity Low_complexity 1 42 0 2615 192 26 26 chr13 29154243 29154847 -72718322 - L1MA10 LINE L1 0 6334 5731 26 0 0 0 chr13 29156043 29156069 -72717100 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr13 29156842 29156872 -72716297 + AT_rich Low_complexity Low_complexity 1 30 0 335 303 0 0 chr13 29156992 29157081 -72716088 - L1MC4 LINE L1 -1339 6703 6615 2042 121 26 71 chr13 29157104 29157152 -72716017 - L1PA15 LINE L1 -21 6144 6095 7731 16 2 0 chr13 29157152 29158442 -72714727 + L1PA3 LINE L1 4860 6151 -4 2042 121 26 71 chr13 29158442 29158460 -72714709 - L1PA15 LINE L1 -70 6095 6078 279 0 0 0 chr13 29158460 29158491 -72714678 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2042 121 26 71 chr13 29158491 29158803 -72714366 - L1PA15 LINE L1 -87 6078 5782 1497 189 14 0 chr13 29158812 29159109 -72714060 + L1P LINE L1 3479 3779 -2367 2144 168 6 11 chr13 29159261 29159625 -72713544 - THE1C LTR MaLR 0 375 14 231 356 127 13 chr13 29159886 29160122 -72713047 - L2 LINE L2 -609 2705 2443 23 33 0 0 chr13 29160474 29160504 -72712665 + AT_rich Low_complexity Low_complexity 1 30 0 315 364 12 19 chr13 29160888 29161050 -72712119 + LTR33 LTR ERVL 52 212 -309 3547 145 133 8 chr13 29161124 29162480 -72710689 + pTR5 LTR ERV1 742 2606 0 605 197 8 41 chr13 29162689 29162811 -72710358 + FLAM_C SINE Alu 1 118 -25 189 171 0 0 chr13 29162813 29162848 -72710321 + GA-rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 29163029 29163050 -72710119 + AT_rich Low_complexity Low_complexity 1 21 0 627 286 66 33 chr13 29163106 29163347 -72709822 - MIR SINE MIR -9 253 5 410 318 84 28 chr13 29163382 29163775 -72709394 + L1M4 LINE L1 4349 4763 -1383 36 77 0 0 chr13 29164682 29164760 -72708409 + AT_rich Low_complexity Low_complexity 1 78 0 381 358 147 29 chr13 29165729 29166565 -72706604 + L2 LINE L2 1724 2658 -656 25 0 0 0 chr13 29166881 29166906 -72706263 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr13 29166914 29166935 -72706234 + AT_rich Low_complexity Low_complexity 1 21 0 359 322 23 35 chr13 29167918 29168092 -72705077 - L2 LINE L2 -5 3308 3137 807 243 36 8 chr13 29168095 29168456 -72704713 + MLT2B1 LTR ERVL 2 460 -60 183 229 0 0 chr13 29168698 29168759 -72704410 + A-rich Low_complexity Low_complexity 1 61 0 1206 317 127 27 chr13 29168791 29168846 -72704323 - L2 LINE L2 -1281 2033 1985 2004 173 16 19 chr13 29168846 29169222 -72703947 - THE1C LTR MaLR 0 375 1 1206 317 127 27 chr13 29169222 29169838 -72703331 - L2 LINE L2 -1329 1985 1295 298 277 0 0 chr13 29169842 29169925 -72703244 + (TA)n Simple_repeat Simple_repeat 1 83 0 180 176 0 0 chr13 29169957 29169991 -72703178 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 2184 156 6 8 chr13 29170027 29170392 -72702777 - THE1B LTR MaLR 0 364 1 8144 118 175 0 chr13 29170393 29171737 -72701432 - THE1B-int LTR MaLR -1 1579 1 2160 164 6 3 chr13 29171739 29172099 -72701070 - THE1B LTR MaLR -2 362 2 1627 251 59 60 chr13 29172149 29173129 -72700040 - L1MA4A LINE L1 -3318 3064 2091 8626 228 51 32 chr13 29173129 29176067 -72697102 + L1MA4A LINE L1 3035 6037 -502 1907 62 62 0 chr13 29176067 29176324 -72696845 + AluY SINE Alu 39 311 0 8626 228 51 32 chr13 29176324 29176829 -72696340 + L1MA4A LINE L1 6037 6531 -8 2228 113 7 0 chr13 29177726 29178036 -72695133 + AluSx SINE Alu 1 312 0 576 165 0 0 chr13 29178218 29178303 -72694866 + FLAM SINE Alu 38 122 -21 5827 206 19 26 chr13 29178320 29178751 -72694418 + L1MA5A LINE L1 2920 3353 -2793 2142 97 7 13 chr13 29178751 29179051 -72694118 + AluY SINE Alu 1 298 -13 5827 206 19 26 chr13 29179051 29180088 -72693081 + L1MA5A LINE L1 3353 4377 -1769 1954 138 0 21 chr13 29180098 29180423 -72692746 + L1PA7 LINE L1 8 325 -6136 * 4395 98 8 5 chr13 29180406 29181048 -72692121 + L1PA7 LINE L1 1006 1649 -4812 20356 105 9 0 chr13 29181031 29184895 -72688274 + L1PA7 LINE L1 2569 6469 0 5217 160 31 44 chr13 29184897 29186805 -72686364 + L1MA5A LINE L1 4368 6280 -17 1521 159 85 15 chr13 29187712 29187983 -72685186 - AluJb SINE Alu -22 290 1 1663 153 42 88 chr13 29188381 29188734 -72684435 + MER1B DNA MER1_type 1 337 0 249 133 142 17 chr13 29189451 29189571 -72683598 + (TTTAA)n Simple_repeat Simple_repeat 2 136 0 3429 117 42 17 chr13 29189915 29190554 -72682615 - HERV17 LTR ERV1 -2686 5434 4780 1296 199 13 63 chr13 29190554 29191005 -72682164 + MER52A LTR ERV1 663 1232 -523 762 163 23 0 chr13 29191341 29191470 -72681699 - LTR12 LTR ERV1 -234 480 349 301 169 28 28 chr13 29191470 29191541 -72681628 - LTR30 LTR ERV1 -108 614 544 1387 132 108 4 chr13 29191541 29191792 -72681377 - LTR12 LTR ERV1 -437 277 1 4839 129 4 8 chr13 29191792 29192569 -72680600 - HERV9 LTR ERV1 0 8399 7626 1695 161 71 63 chr13 29192567 29193332 -72679837 - HERV17 LTR ERV1 -5156 1740 840 * 23432 99 5 4 chr13 29193325 29196710 -72676459 - HERV17 LTR ERV1 -3445 4954 1568 8094 134 4 26 chr13 29196707 29198085 -72675084 - HERV17 LTR ERV1 -6998 1401 55 * 754 143 45 60 chr13 29198069 29198236 -72674933 - LTR12 LTR ERV1 -231 483 299 * 252 243 14 0 chr13 29198236 29198306 -72674863 - LTR30 LTR ERV1 -108 614 544 1310 157 31 66 chr13 29198306 29198593 -72674576 - LTR12 LTR ERV1 -437 277 1 1807 226 27 57 chr13 29198597 29199146 -72674023 + MER52A LTR ERV1 641 1755 0 18335 131 19 20 chr13 29199146 29199885 -72673284 + MER52A-int LTR ERV1 1 739 -6352 2138 114 0 43 chr13 29199885 29200210 -72672959 - AluY SINE Alu 0 311 1 18335 131 19 20 chr13 29200210 29203686 -72669483 + MER52A-int LTR ERV1 739 4342 -2749 1690 118 11 78 chr13 29203687 29204057 -72669112 - MER4A LTR ERV1 0 664 261 557 102 20 20 chr13 29204057 29204155 -72669014 - MER4A LTR ERV1 -566 98 1 18432 109 10 8 chr13 29204155 29206903 -72666266 + MER52A-int LTR ERV1 4340 7091 0 1357 208 45 45 chr13 29206908 29207460 -72665709 + MER52A LTR ERV1 663 1359 -396 731 245 25 0 chr13 29207444 29207607 -72665562 + MER52A LTR ERV1 1587 1753 -2 * 16682 136 39 32 chr13 29207613 29210941 -72662228 - LOR1b-int LTR ERV1 -3331 4789 1439 6039 127 48 23 chr13 29210979 29212103 -72661066 - LOR1b-int LTR ERV1 -6766 1354 203 1781 174 57 0 chr13 29212113 29212464 -72660705 - LOR1b-int LTR ERV1 -7749 371 1 2137 148 117 14 chr13 29212464 29212882 -72660287 - LOR1b LTR ERV1 0 461 1 1473 128 35 0 chr13 29213375 29213602 -72659567 - LTR12 LTR ERV1 0 714 480 275 253 11 0 chr13 29213602 29213693 -72659476 - LTR30 LTR ERV1 -79 643 552 1399 64 223 0 chr13 29213693 29213926 -72659243 - LTR12 LTR ERV1 -429 285 1 2114 130 0 0 chr13 29214759 29215051 -72658118 - AluSx SINE Alu -15 297 6 439 354 42 0 chr13 29215069 29215281 -72657888 - MIR SINE MIR -32 230 10 216 67 0 0 chr13 29216186 29216216 -72656953 + (CA)n Simple_repeat Simple_repeat 1 30 0 1208 274 103 8 chr13 29218152 29218638 -72654531 - MLT1E LTR MaLR 0 593 62 4295 138 40 58 chr13 29218646 29219487 -72653682 - LTR1B LTR ERV1 0 826 1 2815 171 48 46 chr13 29219487 29220178 -72652991 - LTR8A LTR ERV1 -2 725 34 1441 163 100 62 chr13 29220205 29220823 -72652346 - LTR48 LTR ERV1 -4 783 18 3861 121 114 138 chr13 29221008 29222542 -72650627 - pTR5 LTR ERV1 0 2438 743 257 346 92 0 chr13 29222555 29222685 -72650484 + MIR SINE MIR 49 190 -72 22 35 0 0 chr13 29223140 29223169 -72650000 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 29224444 29224469 -72648700 + AT_rich Low_complexity Low_complexity 1 25 0 36 40 0 0 chr13 29225698 29225748 -72647421 + AT_rich Low_complexity Low_complexity 1 50 0 2560 52 0 10 chr13 29225979 29226288 -72646881 + AluY SINE Alu 1 306 -5 248 406 47 8 chr13 29227001 29227129 -72646040 + L2 LINE L2 3117 3249 -23 316 219 0 109 chr13 29227190 29227318 -72645851 + L1MC4 LINE L1 6590 6703 -1339 2048 152 3 0 chr13 29227374 29227684 -72645485 + AluSq SINE Alu 3 313 0 242 303 47 43 chr13 29227867 29228144 -72645025 - L1ME LINE L1 -540 5630 5353 1886 126 3 120 chr13 29229289 29229671 -72643498 - MER1B DNA MER1_type 0 337 1 223 371 21 0 chr13 29229863 29229960 -72643209 + L2 LINE L2 3138 3236 -36 6730 150 23 31 chr13 29230100 29230565 -72642604 + Tigger1 DNA MER2_type 1 469 -1949 760 201 11 26 chr13 29230565 29230754 -72642415 - MER30B DNA MER1_type -4 186 1 6730 150 23 31 chr13 29230754 29231697 -72641472 + Tigger1 DNA MER2_type 469 1419 -999 1117 110 0 13 chr13 29231697 29232016 -72641153 + AluSx SINE Alu 1 317 0 6730 150 23 31 chr13 29232016 29232110 -72641059 + Tigger1 DNA MER2_type 1419 1512 -906 2293 172 39 0 chr13 29232110 29232522 -72640647 + MSTA LTR MaLR 1 428 0 6730 150 23 31 chr13 29232522 29233362 -72639807 + Tigger1 DNA MER2_type 1512 2418 0 575 62 12 0 chr13 29233465 29233545 -72639624 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 237 342 53 9 chr13 29233648 29233762 -72639407 + MIR SINE MIR 123 241 -21 22 43 0 21 chr13 29233940 29233968 -72639201 + AT_rich Low_complexity Low_complexity 1 29 -17 701 191 0 0 chr13 29233968 29234083 -72639086 - FLAM_A SINE Alu -18 115 1 22 43 0 21 chr13 29234083 29234101 -72639068 + AT_rich Low_complexity Low_complexity 29 46 0 2124 161 8 25 chr13 29234176 29234574 -72638595 + L1PA16 LINE L1 5767 6157 -9 26 30 0 0 chr13 29234841 29234874 -72638295 + AT_rich Low_complexity Low_complexity 1 33 0 233 313 113 33 chr13 29234952 29235102 -72638067 + L2 LINE L2 1751 1912 -1402 4032 99 2 0 chr13 29235384 29235937 -72637232 + MER41A LTR ERV1 1 554 0 21 36 0 0 chr13 29236622 29236650 -72636519 + AT_rich Low_complexity Low_complexity 1 28 0 369 341 35 58 chr13 29237724 29237950 -72635219 - MIR SINE MIR -22 240 20 6895 186 146 22 chr13 29238359 29239130 -72634039 + MER52A LTR ERV1 1 675 -1080 2685 76 24 0 chr13 29239130 29239499 -72633670 + L1PA8 LINE L1 5792 6169 -3 6895 186 146 22 chr13 29239499 29240288 -72632881 + MER52A LTR ERV1 675 1755 0 565 283 61 19 chr13 29241277 29241489 -72631680 + MIR SINE MIR 24 244 -18 1821 171 0 3 chr13 29241583 29241887 -72631282 + AluJb SINE Alu 1 303 -9 421 338 46 28 chr13 29241955 29242171 -72630998 + L2 LINE L2 1452 1671 -1643 1584 239 23 87 chr13 29242237 29242414 -72630755 + MER97b DNA MER1_type? 3 190 -863 297 0 0 0 chr13 29242414 29242447 -72630722 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1584 239 23 87 chr13 29242447 29242877 -72630292 + MER97b DNA MER1_type? 190 571 -482 337 241 18 27 chr13 29243080 29243192 -72629977 + MER97c DNA MER1_type? 980 1090 0 618 242 27 22 chr13 29243263 29243486 -72629683 - L1M4 LINE L1 -3104 3042 2819 399 135 24 143 chr13 29243494 29243620 -72629549 - L1MB7 LINE L1 -8 6176 6066 330 307 73 0 chr13 29243622 29243814 -72629355 - L1M4 LINE L1 -3338 2808 2603 6081 205 16 6 chr13 29243842 29245111 -72628058 - L1P LINE L1 -1082 5064 3784 1922 157 135 6 chr13 29245121 29245477 -72627692 - MSTA LTR MaLR -24 404 3 268 309 81 0 chr13 29245581 29245704 -72627465 - L2 LINE L2 -1281 2033 1901 25 51 0 0 chr13 29245872 29245911 -72627258 + AT_rich Low_complexity Low_complexity 1 39 0 604 285 103 61 chr13 29246128 29246553 -72626616 + LTR16B LTR ERVL 3 445 -19 2241 105 0 13 chr13 29246763 29247078 -72626091 + AluSx SINE Alu 1 311 -1 1972 204 50 9 chr13 29247470 29247907 -72625262 + MLT1C LTR MaLR 1 455 -12 1457 354 33 3 chr13 29248024 29248687 -72624482 + HERV16 LTR ERVL 731 1413 -3583 1593 302 47 37 chr13 29248771 29249311 -72623858 + HERV16 LTR ERVL 1597 2199 -2925 1484 220 36 12 chr13 29249311 29249647 -72623522 + MER2 DNA MER2_type 1 344 0 1593 302 47 37 chr13 29249647 29249867 -72623302 + HERV16 LTR ERVL 2199 2415 -2709 1409 186 30 4 chr13 29249876 29250140 -72623029 - AluJb SINE Alu -21 291 21 303 235 15 0 chr13 29250558 29250626 -72622543 + LTR16B LTR ERVL 396 464 0 372 290 35 28 chr13 29252899 29253044 -72620125 - MIR SINE MIR -74 188 43 24 91 0 0 chr13 29253918 29253984 -72619185 + AT_rich Low_complexity Low_complexity 1 66 0 25 0 0 0 chr13 29254088 29254113 -72619056 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr13 29254250 29254284 -72618885 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr13 29254509 29254534 -72618635 + AT_rich Low_complexity Low_complexity 1 25 0 225 139 0 0 chr13 29254627 29254670 -72618499 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 331 269 38 106 chr13 29254687 29254847 -72618322 + LTR33A LTR ERVL 4 152 -371 670 93 0 0 chr13 29255161 29255258 -72617911 - L1PA3 LINE L1 -213 5942 5846 925 36 0 0 chr13 29255258 29255364 -72617805 + L1PA3 LINE L1 6045 6155 0 21 0 0 0 chr13 29255364 29255385 -72617784 + AT_rich Low_complexity Low_complexity 1 21 0 805 140 28 9 chr13 29255514 29255729 -72617440 + GA-rich Low_complexity Low_complexity 1 218 0 188 65 0 32 chr13 29255730 29255761 -72617408 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 1877 125 32 42 chr13 29255819 29256132 -72617037 - AluSx SINE Alu -2 310 1 2211 107 0 0 chr13 29256473 29256773 -72616396 - AluSx SINE Alu -12 300 1 2095 99 3 0 chr13 29257190 29257515 -72615654 - AluSx SINE Alu 0 326 1 25 31 0 0 chr13 29257640 29257672 -72615497 + AT_rich Low_complexity Low_complexity 1 32 0 360 317 42 0 chr13 29257780 29257900 -72615269 - L1MEc LINE L1 -4502 1894 1770 186 71 0 0 chr13 29258578 29258606 -72614563 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 589 254 73 11 chr13 29258630 29258807 -72614362 + MER5A DNA MER1_type 2 189 0 22 56 0 0 chr13 29259262 29259298 -72613871 + AT_rich Low_complexity Low_complexity 1 36 0 646 107 12 0 chr13 29259842 29259942 -72613227 - MSTA LTR MaLR 0 428 268 186 296 0 0 chr13 29259942 29259986 -72613183 - L2 LINE L2 -695 2619 2576 1364 140 133 8 chr13 29259986 29260250 -72612919 + MSTA LTR MaLR 1 297 -131 796 307 57 62 chr13 29260308 29260796 -72612373 + L2 LINE L2 2828 3313 0 24 32 0 0 chr13 29260900 29260931 -72612238 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr13 29261721 29261758 -72611411 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr13 29262097 29262118 -72611051 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 29263394 29263423 -72609746 + AT_rich Low_complexity Low_complexity 1 29 0 2189 190 29 94 chr13 29263800 29264480 -72608689 - MER92B LTR ERV1 0 636 1 186 306 121 16 chr13 29265514 29265638 -72607531 + MIR SINE MIR 16 152 -56 183 217 12 24 chr13 29266444 29266527 -72606642 + CT-rich Low_complexity Low_complexity 3 84 0 1608 215 36 15 chr13 29267964 29268355 -72604814 + MER63B DNA MER1_type 2 400 -36 21 36 0 0 chr13 29268546 29268574 -72604595 + AT_rich Low_complexity Low_complexity 1 28 0 275 206 75 28 chr13 29268575 29268682 -72604487 - L1MA8 LINE L1 -5 6286 6175 363 230 161 0 chr13 29269344 29269431 -72603738 + MER5A DNA MER1_type 4 104 -85 324 247 108 0 chr13 29269497 29269590 -72603579 + L2 LINE L2 3196 3298 -15 23 78 0 0 chr13 29269766 29269817 -72603352 + AT_rich Low_complexity Low_complexity 1 51 0 222 323 16 0 chr13 29269880 29269942 -72603227 - MER5A DNA MER1_type -13 176 114 213 375 42 0 chr13 29269897 29269969 -72603200 + MER5A DNA MER1_type 43 117 -72 * 1594 167 46 101 chr13 29270009 29270535 -72602634 - LTR54B LTR ERV1 -1 497 1 2251 222 26 21 chr13 29270805 29271274 -72601895 + MLT2B3 LTR ERVL 84 554 0 1672 25 5 0 chr13 29272016 29272216 -72600953 - L1PA5 LINE L1 -8 6146 5946 218 341 70 47 chr13 29272384 29272568 -72600601 + MIR3 SINE MIR 4 192 -43 180 274 321 0 chr13 29272645 29272729 -72600440 + L2 LINE L2 2129 2239 -1075 874 284 124 34 chr13 29272775 29273212 -72599957 + L2 LINE L2 2833 3308 -5 363 293 67 13 chr13 29273536 29273705 -72599464 - MIR SINE MIR -62 146 4 237 368 60 26 chr13 29273866 29273983 -72599186 - MIR3 SINE MIR -7 201 81 23 33 0 0 chr13 29275737 29275767 -72597402 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 29275944 29275973 -72597196 + AT_rich Low_complexity Low_complexity 1 29 0 223 344 99 32 chr13 29276182 29276403 -72596766 - L2 LINE L2 -838 2476 2241 203 355 110 82 chr13 29276763 29277081 -72596088 + L2 LINE L2 2933 3259 -13 1777 262 45 107 chr13 29277454 29278639 -72594530 + L1M4 LINE L1 5 1143 -5503 495 80 13 13 chr13 29278639 29278714 -72594455 + MADE1 DNA Mariner 1 75 -5 1777 262 45 107 chr13 29278714 29278980 -72594189 + L1M4 LINE L1 1143 1424 -5222 * 7030 257 50 13 chr13 29278958 29281413 -72591756 + L1M4 LINE L1 3307 5851 -793 747 156 0 8 chr13 29281423 29281545 -72591624 + L1M4 LINE L1 6026 6146 -526 25 51 0 0 chr13 29281756 29281795 -72591374 + AT_rich Low_complexity Low_complexity 1 39 0 250 208 19 0 chr13 29281994 29282047 -72591122 + L2 LINE L2 3255 3308 -5 339 331 56 94 chr13 29282269 29282749 -72590420 - L2 LINE L2 -2 3270 2809 298 275 148 7 chr13 29282938 29283087 -72590082 - L2 LINE L2 -957 2357 2188 197 241 101 0 chr13 29283178 29283257 -72589912 + L3b LINE CR1 1293 1379 -204 2089 122 0 0 chr13 29285759 29286053 -72587116 + AluSq SINE Alu 1 294 -19 23 0 0 0 chr13 29286100 29286123 -72587046 + AT_rich Low_complexity Low_complexity 1 23 0 1413 152 0 0 chr13 29286389 29286593 -72586576 + AluSx SINE Alu 1 204 -108 238 152 61 0 chr13 29286594 29286696 -72586473 + (TTTA)n Simple_repeat Simple_repeat 1 108 0 841 261 73 67 chr13 29287068 29287425 -72585744 - LTR16A1 LTR ERVL -18 439 81 2538 167 71 24 chr13 29287544 29288077 -72585092 - L1MC1 LINE L1 0 6333 5776 24 0 0 0 chr13 29288413 29288437 -72584732 + AT_rich Low_complexity Low_complexity 1 24 0 325 273 61 59 chr13 29289040 29289485 -72583684 + L1MEd LINE L1 925 1464 -1026 24 0 0 0 chr13 29290019 29290043 -72583126 + AT_rich Low_complexity Low_complexity 1 24 0 225 298 7 33 chr13 29290086 29290237 -72582932 + A-rich Low_complexity Low_complexity 4 150 0 22 0 0 0 chr13 29290793 29290815 -72582354 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr13 29292870 29292904 -72580265 + (CA)n Simple_repeat Simple_repeat 1 34 0 1742 186 3 3 chr13 29293064 29293371 -72579798 - AluSx SINE Alu -5 307 1 662 181 0 192 chr13 29293839 29294110 -72579059 - MER20 DNA MER1_type 0 219 1 365 223 46 61 chr13 29294604 29294653 -72578516 - MSTB LTR MaLR -175 251 203 1780 172 7 0 chr13 29294653 29294943 -72578226 + AluSx SINE Alu 1 292 -20 365 223 46 61 chr13 29294943 29295082 -72578087 - MSTB LTR MaLR -223 203 1 10298 75 5 37 chr13 29295400 29297766 -72575403 - L1PA7 LINE L1 0 6154 3872 356 167 30 0 chr13 29298194 29298260 -72574909 + MIR SINE MIR 82 149 -113 2021 121 3 0 chr13 29298705 29298995 -72574174 + AluSp SINE Alu 1 291 -22 1521 198 116 56 chr13 29299175 29299660 -72573509 + MER67D LTR ERV1 1 514 0 24 32 0 0 chr13 29300513 29300544 -72572625 + AT_rich Low_complexity Low_complexity 1 31 0 5505 133 7 8 chr13 29300570 29302335 -72570834 - L1PA15 LINE L1 -4 6812 5053 7478 248 74 29 chr13 29302353 29304151 -72569018 - L1PA15 LINE L1 -2805 3992 2276 2059 57 7 18 chr13 29304151 29304432 -72568737 - L1PA8 LINE L1 0 6172 5895 7478 248 74 29 chr13 29304432 29306421 -72566748 - L1PA15 LINE L1 -4521 2276 2 22 0 0 0 chr13 29306808 29306830 -72566339 + AT_rich Low_complexity Low_complexity 1 22 0 292 300 83 105 chr13 29307406 29307457 -72565712 + L3 LINE CR1 1209 1260 -317 608 213 5 56 chr13 29307457 29307654 -72565515 - MER53 DNA DNA -2 187 1 292 300 83 105 chr13 29307654 29307975 -72565194 + L3 LINE CR1 1260 1573 -4 43 20 0 0 chr13 29308416 29308466 -72564703 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr13 29308623 29308648 -72564521 + AT_rich Low_complexity Low_complexity 1 25 0 1670 177 10 3 chr13 29308659 29308958 -72564211 + AluJo SINE Alu 11 311 -1 279 236 0 28 chr13 29310990 29311062 -72562107 + GA-rich Low_complexity Low_complexity 4 73 0 229 255 0 0 chr13 29311317 29311368 -72561801 + (TG)n Simple_repeat Simple_repeat 2 52 0 258 333 27 34 chr13 29311369 29311516 -72561653 + L2 LINE L2 1717 1862 -1452 280 265 15 0 chr13 29312010 29312078 -72561091 + L2 LINE L2 3237 3305 -8 252 0 0 0 chr13 29312277 29312305 -72560864 + (CA)n Simple_repeat Simple_repeat 1 28 0 281 366 32 0 chr13 29313390 29313483 -72559686 + MIR3 SINE MIR 87 182 -26 413 308 0 8 chr13 29313540 29313660 -72559509 - L2 LINE L2 -3 3310 3192 1924 133 68 11 chr13 29313779 29314132 -72559037 - THE1C LTR MaLR 0 375 3 30 27 0 0 chr13 29314286 29314323 -72558846 + AT_rich Low_complexity Low_complexity 1 37 0 193 189 0 0 chr13 29314370 29314407 -72558762 - MIR SINE MIR 0 262 226 818 267 84 15 chr13 29314411 29314936 -72558233 - MLT1G3 LTR MaLR 0 595 1 2258 172 52 0 chr13 29315169 29315576 -72557593 - MSTA LTR MaLR 0 428 1 26 0 0 0 chr13 29315827 29315853 -72557316 + AT_rich Low_complexity Low_complexity 1 26 0 343 361 22 11 chr13 29315853 29316033 -72557136 - MLT1-int LTR MaLR -498 873 692 393 268 47 37 chr13 29316307 29316497 -72556672 - MLT1-int LTR MaLR -830 541 350 313 47 0 23 chr13 29316512 29316555 -72556614 - U2 snRNA snRNA -146 42 1 1495 213 17 7 chr13 29316799 29317100 -72556069 + AluJb SINE Alu 1 304 -8 972 328 78 15 chr13 29317223 29317620 -72555549 - MLT1G1 LTR MaLR -173 422 1 546 262 85 0 chr13 29317643 29317807 -72555362 - MIR SINE MIR -73 189 12 275 319 0 11 chr13 29317819 29317910 -72555259 + MIR SINE MIR 65 154 -108 24 32 0 0 chr13 29318057 29318088 -72555081 + AT_rich Low_complexity Low_complexity 1 31 0 2093 125 0 7 chr13 29318281 29318578 -72554591 - AluSg SINE Alu -15 295 1 1590 168 47 50 chr13 29318676 29319016 -72554153 + MER44D DNA MER2_type 1 609 0 239 0 32 0 chr13 29319207 29319238 -72553931 + (TA)n Simple_repeat Simple_repeat 2 33 0 324 70 0 0 chr13 29319239 29319282 -72553887 + (TG)n Simple_repeat Simple_repeat 2 44 0 407 305 75 32 chr13 29319290 29319477 -72553692 + LTR33 LTR ERVL 17 211 -310 397 232 12 0 chr13 29319653 29319735 -72553434 + MER8 DNA MER2_type 7 89 -150 241 250 0 0 chr13 29319775 29319819 -72553350 + MER2 DNA MER2_type 302 345 0 319 287 50 99 chr13 29320282 29320585 -72552584 + L2 LINE L2 3026 3313 0 508 324 85 52 chr13 29321307 29321545 -72551624 - L1MEd LINE L1 -893 1597 1368 2077 114 4 0 chr13 29321545 29321869 -72551300 - AluSp SINE Alu 0 328 4 508 324 85 52 chr13 29321869 29322213 -72550956 - L1MEd LINE L1 -1122 1368 915 2158 119 0 0 chr13 29322693 29322988 -72550181 + AluSc SINE Alu 1 295 -14 21 57 0 0 chr13 29323528 29323563 -72549606 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr13 29324493 29324517 -72548652 + AT_rich Low_complexity Low_complexity 1 24 0 1938 141 0 0 chr13 29325518 29325808 -72547361 - AluSx SINE Alu -21 291 2 6178 43 145 14 chr13 29325840 29326727 -72546442 - L1P LINE L1 -5141 1005 2 597 342 163 52 chr13 29326813 29327606 -72545563 + L2 LINE L2 79 959 -2355 970 294 96 21 chr13 29327606 29327990 -72545179 + L2 LINE L2 2104 2516 -798 1550 203 4 14 chr13 29328008 29328289 -72544880 + MER1B DNA MER1_type 1 278 -61 354 367 19 13 chr13 29329072 29329230 -72543939 + L2 LINE L2 2895 3053 -260 606 292 40 26 chr13 29331740 29331966 -72541203 - MLT1J LTR MaLR -46 465 237 27 73 0 0 chr13 29332899 29332954 -72540215 + AT_rich Low_complexity Low_complexity 1 55 0 233 333 13 0 chr13 29335532 29335607 -72537562 + C-rich Low_complexity Low_complexity 6 81 0 281 111 0 0 chr13 29336093 29336138 -72537031 + L1MA2 LINE L1 6260 6304 0 2074 124 3 0 chr13 29336679 29336977 -72536192 + AluSx SINE Alu 2 300 -12 2010 107 34 0 chr13 29337007 29337298 -72535871 + AluY SINE Alu 1 301 -10 2473 49 0 7 chr13 29337399 29337705 -72535464 + AluY SINE Alu 1 304 -7 318 282 47 0 chr13 29337707 29337792 -72535377 + L1MC4 LINE L1 6615 6703 -1339 190 280 120 40 chr13 29338026 29338151 -72535018 - MIR SINE MIR -50 212 78 258 123 31 77 chr13 29338172 29338237 -72534932 - MSTC LTR MaLR -366 62 1 491 272 37 0 chr13 29338272 29338408 -72534761 - MIR SINE MIR 0 262 122 1948 141 58 0 chr13 29339405 29339731 -72533438 + MER7A DNA MER2_type 3 345 -1 1518 285 30 52 chr13 29340312 29340902 -72532267 - MLT1E LTR MaLR -8 585 9 5770 108 18 11 chr13 29341022 29342419 -72530750 - L1PA14 LINE L1 0 6161 4758 24 0 0 0 chr13 29342881 29342905 -72530264 + AT_rich Low_complexity Low_complexity 1 24 0 2430 61 3 0 chr13 29343083 29343379 -72529790 + AluY SINE Alu 1 297 -14 22 0 0 0 chr13 29343379 29343401 -72529768 + AT_rich Low_complexity Low_complexity 1 22 0 1196 152 17 104 chr13 29344002 29344291 -72528878 + L1MCa LINE L1 620 883 -5543 * 5751 181 14 6 chr13 29344286 29346407 -72526762 + L1PB2 LINE L1 4004 6143 -8 204 40 0 0 chr13 29346408 29346433 -72526736 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 3047 164 79 23 chr13 29346433 29347295 -72525874 + L1MCa LINE L1 888 1895 -4531 23 0 0 0 chr13 29347498 29347521 -72525648 + AT_rich Low_complexity Low_complexity 1 23 0 201 261 17 17 chr13 29347777 29347896 -72525273 + (TA)n Simple_repeat Simple_repeat 1 119 0 338 292 46 46 chr13 29348920 29349160 -72524009 - L1MEd LINE L1 -2025 4104 3865 201 138 0 0 chr13 29349202 29349231 -72523938 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 188 35 35 0 chr13 29349318 29349347 -72523822 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr13 29349362 29349387 -72523782 + AT_rich Low_complexity Low_complexity 1 25 0 1672 154 0 18 chr13 29349424 29349696 -72523473 - AluSx SINE Alu -12 300 34 362 260 82 25 chr13 29350070 29350389 -72522780 - L1MEd LINE L1 -2916 3213 2877 420 294 108 13 chr13 29350419 29350650 -72522519 - L1MEd LINE L1 -3706 2423 2171 373 315 42 32 chr13 29351277 29351493 -72521676 - L1MEd LINE L1 -5340 779 562 25 65 0 0 chr13 29351893 29351939 -72521230 + AT_rich Low_complexity Low_complexity 1 46 0 320 215 13 0 chr13 29352112 29352191 -72520978 - MER116 DNA Mariner 0 80 1 333 0 0 0 chr13 29352459 29352496 -72520673 + (CA)n Simple_repeat Simple_repeat 2 38 0 1676 188 0 10 chr13 29352804 29353112 -72520057 + AluJb SINE Alu 1 305 -7 365 95 16 0 chr13 29353112 29353175 -72519994 + (GA)n Simple_repeat Simple_repeat 1 64 0 249 83 0 0 chr13 29353174 29353210 -72519959 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 * 2406 78 3 0 chr13 29353303 29353612 -72519557 + AluY SINE Alu 1 310 -1 2360 262 69 45 chr13 29353919 29355756 -72517413 - L1MB7 LINE L1 0 6184 4283 1555 199 0 17 chr13 29355769 29356061 -72517108 - AluJo SINE Alu -25 287 1 1851 203 20 29 chr13 29356061 29356504 -72516665 - L1MB2 LINE L1 -45 6126 5688 1064 180 13 9 chr13 29356507 29356740 -72516429 - L1MB2 LINE L1 -949 5197 4964 * 2373 244 34 41 chr13 29356729 29357709 -72515460 + L1MC3 LINE L1 887 7178 -887 1048 238 0 4 chr13 29357716 29357960 -72515209 + L1MC3 LINE L1 7815 8057 -8 29 47 0 0 chr13 29358111 29358154 -72515015 + AT_rich Low_complexity Low_complexity 1 43 0 252 0 0 0 chr13 29362793 29362821 -72510348 + (T)n Simple_repeat Simple_repeat 1 28 0 385 292 93 18 chr13 29363281 29363507 -72509662 + L1ME3A LINE L1 5578 5820 -1988 190 127 14 56 chr13 29363580 29363651 -72509518 + (TA)n Simple_repeat Simple_repeat 1 68 0 517 239 122 10 chr13 29363727 29363932 -72509237 + L1ME3A LINE L1 5729 5956 -214 23 0 0 0 chr13 29364824 29364847 -72508322 + AT_rich Low_complexity Low_complexity 1 23 0 397 263 95 15 chr13 29365906 29366056 -72507113 + MIR SINE MIR 35 194 -63 372 316 92 41 chr13 29366176 29366569 -72506600 + L1ME3A LINE L1 4283 4695 -1451 1192 255 15 7 chr13 29366590 29366861 -72506308 + AluJb SINE Alu 1 273 -39 630 84 28 0 chr13 29366863 29366970 -72506199 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 37 0 0 0 chr13 29367329 29367366 -72505803 + AT_rich Low_complexity Low_complexity 1 37 0 368 361 28 52 chr13 29367553 29367844 -72505325 - L2 LINE L2 -479 2835 2552 2032 88 56 7 chr13 29368706 29368991 -72504178 - AluSg1 SINE Alu -10 299 1 422 348 61 71 chr13 29371254 29371665 -72501504 + L2 LINE L2 2866 3272 0 209 271 0 0 chr13 29372224 29372272 -72500897 + (CA)n Simple_repeat Simple_repeat 1 48 0 960 283 159 25 chr13 29374128 29374734 -72498435 + L1ME3A LINE L1 5472 6166 -4 30 45 0 0 chr13 29374851 29374895 -72498274 + AT_rich Low_complexity Low_complexity 1 44 0 463 360 68 0 chr13 29374995 29375231 -72497938 - MIR SINE MIR -6 256 5 247 291 142 30 chr13 29375399 29375533 -72497636 - L2 LINE L2 -47 3266 3118 256 259 49 0 chr13 29376827 29376908 -72496261 - MIR SINE MIR -46 216 132 1510 181 78 54 chr13 29377704 29378034 -72495135 + MER67C LTR ERV1 1 333 -313 1363 83 0 10 chr13 29378034 29378227 -72494942 + L1PA5 LINE L1 5961 6151 -3 1510 181 78 54 chr13 29378227 29378300 -72494869 + MER67C LTR ERV1 333 403 -243 338 267 163 15 chr13 29378312 29378447 -72494722 + MER67D LTR ERV1 356 510 -4 216 0 0 0 chr13 29378808 29378832 -72494337 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 1805 267 73 13 chr13 29379160 29379755 -72493414 - MLT1E2 LTR MaLR -2 624 1 404 335 22 11 chr13 29379858 29380040 -72493129 - MIR SINE MIR -2 260 77 252 0 0 0 chr13 29380049 29380077 -72493092 + (A)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr13 29380507 29380531 -72492638 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1962 127 7 0 chr13 29380535 29380819 -72492350 - AluSg SINE Alu -24 286 1 205 291 85 48 chr13 29380871 29381036 -72492133 + MIR SINE MIR 66 236 -26 556 142 0 121 chr13 29381886 29382027 -72491142 + FLAM_C SINE Alu 1 124 -9 5516 166 29 9 chr13 29382315 29383718 -72489451 - L1MA8 LINE L1 -11 6280 4851 1138 154 0 5 chr13 29383718 29383913 -72489256 + L1PA13 LINE L1 5970 6163 0 341 308 43 0 chr13 29384233 29384350 -72488819 + MIR SINE MIR 48 169 -93 21 0 0 0 chr13 29384565 29384586 -72488583 + AT_rich Low_complexity Low_complexity 1 21 0 311 292 21 0 chr13 29384596 29384692 -72488477 - L1M4 LINE L1 -1286 4860 4763 238 157 14 57 chr13 29386050 29386120 -72487049 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 400 276 29 0 chr13 29386162 29386267 -72486902 - MIR SINE MIR -89 173 66 25 0 0 0 chr13 29386565 29386590 -72486579 + AT_rich Low_complexity Low_complexity 1 25 0 285 288 116 10 chr13 29386615 29386813 -72486356 + L1MC4a LINE L1 4630 4848 -1298 1155 266 114 47 chr13 29387189 29387848 -72485321 + L1MC4a LINE L1 5283 5985 -1823 180 378 178 7 chr13 29388734 29388869 -72484300 + MIR3 SINE MIR 23 180 -28 24 53 0 0 chr13 29388940 29388978 -72484191 + AT_rich Low_complexity Low_complexity 1 38 0 248 307 13 13 chr13 29389689 29389764 -72483405 - L2 LINE L2 -1 3312 3238 382 341 106 66 chr13 29389854 29389988 -72483181 + L2 LINE L2 257 384 -2930 2510 68 0 0 chr13 29389988 29390299 -72482870 + AluY SINE Alu 1 311 0 382 341 106 66 chr13 29390299 29390695 -72482474 + L2 LINE L2 384 808 -2506 228 135 0 0 chr13 29390908 29390945 -72482224 + (CA)n Simple_repeat Simple_repeat 2 38 0 27 29 0 0 chr13 29391114 29391148 -72482021 + AT_rich Low_complexity Low_complexity 1 34 0 2496 69 0 0 chr13 29391444 29391749 -72481420 + AluY SINE Alu 1 305 -6 249 312 108 45 chr13 29392951 29393265 -72479904 + L2 LINE L2 1737 2070 -1244 559 220 8 30 chr13 29393300 29393432 -72479737 + MER94 DNA DNA 3 131 -3 514 338 33 42 chr13 29393871 29394202 -72478967 - L2 LINE L2 -1164 2150 1823 457 342 24 62 chr13 29394202 29394573 -72478596 + L1M3d LINE L1 421 777 -5526 2405 257 83 33 chr13 29394638 29396920 -72476249 + L1M3d LINE L1 779 3290 -3092 824 292 23 11 chr13 29396967 29397231 -72475938 + LTR16B LTR ERVL 191 457 -7 524 336 89 33 chr13 29397232 29397592 -72475577 - L2 LINE L2 -1528 1786 1407 1569 151 41 33 chr13 29397605 29397970 -72475199 - L1MA8 LINE L1 -13 6278 5911 717 218 6 0 chr13 29398014 29398179 -72474990 - L1M3e LINE L1 -3760 3346 3181 345 224 26 0 chr13 29398184 29398260 -72474909 - L1 LINE L1 -6667 363 286 * 413 274 18 0 chr13 29398256 29398369 -72474800 + L1M3e LINE L1 680 794 -6236 1553 244 73 59 chr13 29398379 29399006 -72474163 - L1M3e LINE L1 -5574 1456 821 355 303 67 25 chr13 29399041 29399160 -72474009 - L2 LINE L2 -2955 359 236 1411 199 162 8 chr13 29399640 29400011 -72473158 - MSTA LTR MaLR 0 428 1 8284 151 24 47 chr13 29400011 29401625 -72471544 - MSTA-int LTR MaLR 0 1580 3 1717 169 146 13 chr13 29401627 29402005 -72471164 - MSTA LTR MaLR 0 428 1 219 356 132 21 chr13 29402077 29402501 -72470668 + L2 LINE L2 1545 2015 -1299 188 238 16 0 chr13 29403478 29403541 -72469628 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 236 81 81 0 chr13 29403601 29403638 -72469531 - MADE1 DNA Mariner 0 80 41 3020 94 7 7 chr13 29403743 29404191 -72468978 - LTR7 LTR ERV1 -2 448 1 300 222 0 0 chr13 29404667 29404739 -72468430 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 205 409 108 16 chr13 29404930 29405253 -72467916 + L3 LINE CR1 236 588 -989 30 59 0 0 chr13 29405925 29405976 -72467193 + AT_rich Low_complexity Low_complexity 1 51 0 296 102 0 17 chr13 29406108 29406167 -72467002 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 13941 193 33 14 chr13 29406168 29407910 -72465259 - L1PB1 LINE L1 -9 6858 5150 254 29 29 0 chr13 29407910 29407945 -72465224 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 13941 193 33 14 chr13 29407945 29410269 -72462900 - L1PB1 LINE L1 -1717 5150 2509 180 0 0 0 chr13 29410269 29410289 -72462880 + (TTA)n Simple_repeat Simple_repeat 2 21 0 13941 193 33 14 chr13 29410289 29412215 -72460954 - L1PB1 LINE L1 -4358 2509 621 1084 183 5 0 chr13 29412203 29412400 -72460769 - L1PB1 LINE L1 -6663 200 3 * 263 295 49 33 chr13 29412402 29412524 -72460645 + L3 LINE CR1 634 757 -820 250 281 10 10 chr13 29412887 29412983 -72460186 - L1ME LINE L1 -276 5845 5750 1513 177 7 40 chr13 29412992 29413292 -72459877 - AluJb SINE Alu -17 295 6 657 173 8 0 chr13 29413299 29413426 -72459743 - FRAM SINE Alu 0 40 1 237 250 42 8 chr13 29413704 29413824 -72459345 + (TA)n Simple_repeat Simple_repeat 2 125 0 884 258 45 38 chr13 29414117 29414381 -72458788 - LTR40a LTR ERVL 0 519 254 513 73 0 0 chr13 29414399 29414467 -72458702 - MADE1 DNA Mariner -1 79 12 * 544 253 122 35 chr13 29414449 29414678 -72458491 - LTR40a LTR ERVL -270 249 1 350 238 82 49 chr13 29414678 29414800 -72458369 - MIR SINE MIR -125 137 12 241 322 70 9 chr13 29416247 29416362 -72456807 - L3 LINE CR1 -14 1563 1442 1729 127 44 29 chr13 29416455 29416760 -72456409 + AluSx SINE Alu 3 311 0 2104 107 0 0 chr13 29417521 29417829 -72455340 + AluSg1 SINE Alu 1 308 0 1225 188 11 15 chr13 29419101 29419367 -72453802 + L1MB7 LINE L1 5902 6166 -18 21 0 0 0 chr13 29419543 29419564 -72453605 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 29419860 29419896 -72453273 + AT_rich Low_complexity Low_complexity 1 36 0 706 240 0 0 chr13 29420304 29420450 -72452719 - FRAM SINE Alu -16 160 15 21 0 0 0 chr13 29420880 29420901 -72452268 + AT_rich Low_complexity Low_complexity 1 21 0 317 321 9 0 chr13 29420964 29421076 -72452093 + (CA)n Simple_repeat Simple_repeat 1 113 0 21 0 0 0 chr13 29421991 29422012 -72451157 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr13 29422172 29422212 -72450957 + AT_rich Low_complexity Low_complexity 1 40 0 2619 20 7 3 chr13 29422564 29422870 -72450299 - AluY SINE Alu -4 307 1 345 24 0 0 chr13 29423091 29423133 -72450036 + (CA)n Simple_repeat Simple_repeat 1 42 0 240 238 0 0 chr13 29425637 29425700 -72447469 + (TA)n Simple_repeat Simple_repeat 2 64 0 3861 167 127 28 chr13 29425702 29426535 -72446634 + MER21A LTR ERV1 16 931 0 21 0 0 0 chr13 29426893 29426914 -72446255 + AT_rich Low_complexity Low_complexity 1 21 0 264 300 50 10 chr13 29427852 29427952 -72445217 - LOR1-int LTR ERV1 -1613 6507 6404 846 248 125 20 chr13 29429019 29429471 -72443698 + MLT1E LTR MaLR 1 593 0 527 338 15 0 chr13 29429527 29429725 -72443444 + L2 LINE L2 2316 2516 -798 338 363 21 32 chr13 29429790 29429841 -72443328 + L2 LINE L2 2710 2760 -554 2284 83 10 13 chr13 29429841 29430142 -72443027 - AluY SINE Alu -11 300 1 338 363 21 32 chr13 29430142 29430280 -72442889 + L2 LINE L2 2760 2897 -417 284 102 20 0 chr13 29430570 29430619 -72442550 + (TC)n Simple_repeat Simple_repeat 2 51 0 195 42 0 0 chr13 29430619 29430643 -72442526 + (CA)n Simple_repeat Simple_repeat 1 24 0 371 336 38 21 chr13 29431185 29431423 -72441746 + L1MEc LINE L1 23 264 -6132 728 188 50 17 chr13 29431487 29431668 -72441501 + L1MB2 LINE L1 5985 6171 0 642 255 79 5 chr13 29431684 29431900 -72441269 + L1MEc LINE L1 2171 2402 -3994 568 230 44 96 chr13 29431923 29432133 -72441036 - MLT1E3 LTR MaLR -177 447 207 521 186 8 0 chr13 29432141 29432270 -72440899 + CT-rich Low_complexity Low_complexity 1 130 0 1154 232 54 14 chr13 29432281 29432578 -72440591 - MLT1E1 LTR MaLR -345 309 1 21 0 0 0 chr13 29432821 29432842 -72440327 + AT_rich Low_complexity Low_complexity 1 21 0 1106 194 5 22 chr13 29432872 29433094 -72440075 - AluJb SINE Alu -8 304 87 304 283 24 24 chr13 29434782 29434948 -72438221 + (CA)n Simple_repeat Simple_repeat 2 167 0 320 311 76 8 chr13 29435593 29435725 -72437444 - MER5A DNA MER1_type -6 183 43 2051 213 129 6 chr13 29436059 29436562 -72436607 + MER70B LTR ERVL 5 569 -9 1739 179 30 0 chr13 29436699 29436995 -72436174 - AluSx SINE Alu -7 305 1 258 200 0 18 chr13 29437811 29437866 -72435303 + CT-rich Low_complexity Low_complexity 2 55 0 366 23 0 0 chr13 29437886 29437929 -72435240 + (CA)n Simple_repeat Simple_repeat 2 44 0 216 0 0 0 chr13 29438863 29438887 -72434282 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 372 316 0 0 chr13 29439184 29439342 -72433827 + (CATATA)n Simple_repeat Simple_repeat 5 162 0 1866 151 83 14 chr13 29439683 29440034 -72433135 - THE1C LTR MaLR 0 375 1 1369 296 54 28 chr13 29440086 29440620 -72432549 - MLT1H1 LTR MaLR -7 548 1 718 276 104 5 chr13 29440770 29440991 -72432178 - MIR SINE MIR -14 248 6 2773 19 0 0 chr13 29441431 29441741 -72431428 + AluYa5 SINE Alu 1 310 -1 27 0 0 0 chr13 29443061 29443088 -72430081 + AT_rich Low_complexity Low_complexity 1 27 0 199 114 0 91 chr13 29443644 29443688 -72429481 + L2 LINE L2 3274 3313 0 747 144 20 13 chr13 29444288 29444441 -72428728 + GA-rich Low_complexity Low_complexity 1 154 0 258 105 0 0 chr13 29445316 29445354 -72427815 + (GA)n Simple_repeat Simple_repeat 2 39 0 1897 131 117 0 chr13 29446323 29446673 -72426496 - L1PA13 LINE L1 0 6163 5773 25 0 0 0 chr13 29447203 29447228 -72425941 + AT_rich Low_complexity Low_complexity 1 25 0 2342 103 60 0 chr13 29447948 29448298 -72424871 + THE1C LTR MaLR 5 375 0 8407 131 45 66 chr13 29448298 29448498 -72424671 + THE1C-int LTR MaLR 1 204 -1376 1997 155 3 0 chr13 29448498 29448807 -72424362 + AluSx SINE Alu 1 310 -2 8407 131 45 66 chr13 29448807 29450219 -72422950 + THE1C-int LTR MaLR 204 1580 0 2375 134 13 5 chr13 29450219 29450591 -72422578 + THE1C LTR MaLR 1 375 0 193 351 81 56 chr13 29450842 29451127 -72422042 + L2 LINE L2 1839 2130 -1184 293 360 38 42 chr13 29451155 29451391 -72421778 + L2 LINE L2 2208 2442 -872 22 35 0 0 chr13 29453257 29453286 -72419883 + AT_rich Low_complexity Low_complexity 1 29 0 1855 147 0 13 chr13 29454629 29454928 -72418241 - AluSx SINE Alu -17 295 1 230 343 80 23 chr13 29456459 29456634 -72416535 - L2 LINE L2 -116 3197 3013 1181 123 0 0 chr13 29456643 29456822 -72416347 - L1PA16 LINE L1 -441 5725 5547 2386 139 40 31 chr13 29456822 29457244 -72415925 + L1PA16 LINE L1 5729 6157 -9 300 27 0 0 chr13 29457331 29457368 -72415801 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 0 0 0 chr13 29457920 29457948 -72415221 + AT_rich Low_complexity Low_complexity 1 28 0 1377 222 104 43 chr13 29458001 29458626 -72414543 + L1ME1 LINE L1 3851 4513 -1633 1936 246 21 34 chr13 29458746 29459376 -72413793 + L1ME1 LINE L1 5215 5835 -331 3767 147 7 2 chr13 29459425 29460031 -72413138 + L1PA14 LINE L1 5505 6113 -48 22 56 0 0 chr13 29460091 29460127 -72413042 + AT_rich Low_complexity Low_complexity 1 36 0 240 200 70 20 chr13 29460214 29460314 -72412855 + L1M4 LINE L1 4301 4405 -1741 612 265 100 71 chr13 29460347 29460656 -72412513 + L2 LINE L2 2988 3305 -8 547 240 27 28 chr13 29460657 29460866 -72412303 + L1ME1 LINE L1 5821 6023 -143 259 329 0 0 chr13 29461540 29461625 -72411544 + L1ME1 LINE L1 6010 6094 -72 33 25 0 0 chr13 29461625 29461665 -72411504 + AT_rich Low_complexity Low_complexity 1 40 0 439 85 57 40 chr13 29461673 29461850 -72411319 + (TA)n Simple_repeat Simple_repeat 1 180 0 292 331 67 44 chr13 29462007 29462533 -72410636 + HAL1b LINE L1 69 606 -742 1425 235 19 30 chr13 29462934 29463300 -72409869 - MLT1A1 LTR MaLR 0 365 4 750 253 103 82 chr13 29463353 29463901 -72409268 + L1MC5 LINE L1 6597 7078 -883 550 266 112 23 chr13 29463914 29464173 -72408996 + L1MC5 LINE L1 7249 7530 -431 28 29 0 0 chr13 29467024 29467059 -72406110 + AT_rich Low_complexity Low_complexity 1 35 0 2504 56 0 0 chr13 29467070 29467376 -72405793 + AluY SINE Alu 1 306 -5 2247 100 3 28 chr13 29467729 29468048 -72405121 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr13 29468642 29468664 -72404505 + AT_rich Low_complexity Low_complexity 1 22 0 255 242 0 0 chr13 29469009 29469071 -72404098 + T-rich Low_complexity Low_complexity 1 62 0 987 119 6 31 chr13 29469213 29469373 -72403796 + MER54B LTR ERVL 1 156 -637 38 22 0 0 chr13 29469417 29469462 -72403707 + AT_rich Low_complexity Low_complexity 1 45 0 3085 206 41 17 chr13 29469478 29470113 -72403056 + MER54B LTR ERVL 144 793 0 241 269 39 10 chr13 29470660 29470764 -72402405 + (TA)n Simple_repeat Simple_repeat 1 107 0 360 0 0 0 chr13 29470815 29470855 -72402314 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 281 26 26 0 chr13 29470854 29470892 -72402277 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 454 174 0 0 chr13 29470944 29471030 -72402139 - L1MB1 LINE L1 0 6168 6083 24 32 0 0 chr13 29472308 29472339 -72400830 + AT_rich Low_complexity Low_complexity 1 31 0 241 314 112 25 chr13 29472664 29472906 -72400263 - L2 LINE L2 -1210 2104 1842 30 45 0 0 chr13 29474583 29474627 -72398542 + AT_rich Low_complexity Low_complexity 1 44 0 2273 97 3 0 chr13 29475161 29475459 -72397710 + AluSx SINE Alu 1 299 -13 231 331 83 32 chr13 29475988 29476145 -72397024 + L3 LINE CR1 1185 1349 -228 226 187 22 55 chr13 29476237 29476328 -72396841 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 1055 279 28 45 chr13 29476579 29476938 -72396231 + MLT1H1 LTR MaLR 195 547 -8 454 322 0 0 chr13 29477133 29477276 -72395893 + MLT1-int LTR MaLR 399 541 -830 1703 113 0 0 chr13 29477981 29478220 -72394949 + AluSq SINE Alu 1 239 -74 1051 104 7 0 chr13 29478225 29478369 -72394800 + AluSg/x SINE Alu 156 300 -12 340 303 23 8 chr13 29478690 29478822 -72394347 + MLT1H1 LTR MaLR 3 136 -454 908 104 42 7 chr13 29478842 29478986 -72394183 - MSTA LTR MaLR -279 149 1 789 316 33 11 chr13 29479413 29479688 -72393481 + MLT1H1 LTR MaLR 175 455 -100 189 0 0 0 chr13 29479791 29479812 -72393357 + (TC)n Simple_repeat Simple_repeat 1 21 0 311 237 119 68 chr13 29480833 29481010 -72392159 - LTR41 LTR ERVL -1 772 587 426 335 138 45 chr13 29481859 29482256 -72390913 - L2 LINE L2 0 3313 2880 231 303 77 58 chr13 29482328 29482483 -72390686 + MIR SINE MIR 91 248 -14 1357 225 26 0 chr13 29484173 29484484 -72388685 + MER67C LTR ERV1 1 319 -391 2351 226 53 42 chr13 29484484 29485589 -72387580 + LTR27 LTR ERV1 3 1755 0 1204 164 18 91 chr13 29485593 29485867 -72387302 + MER67C LTR ERV1 320 573 -137 1509 141 42 157 chr13 29485869 29486252 -72386917 - MER1B DNA MER1_type 0 339 1 862 123 36 0 chr13 29486252 29486390 -72386779 + MER67C LTR ERV1 568 710 0 14433 220 14 7 chr13 29487378 29487734 -72385435 - L1PB1 LINE L1 -8 6143 5791 261 83 0 0 chr13 29487734 29487770 -72385399 + (TA)n Simple_repeat Simple_repeat 2 37 0 14433 220 14 7 chr13 29487770 29492058 -72381111 - L1PB1 LINE L1 -360 5791 1479 2249 94 3 0 chr13 29492269 29492567 -72380602 - AluY SINE Alu -12 299 1 189 121 0 0 chr13 29493089 29493122 -72380047 + (TG)n Simple_repeat Simple_repeat 1 33 0 2964 172 78 17 chr13 29493125 29493137 -72380032 + MER4D LTR ERV1 1 11 -892 207 0 0 0 chr13 29493137 29493160 -72380009 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2964 172 78 17 chr13 29493160 29493791 -72379378 + MER4D LTR ERV1 11 683 -220 1136 237 36 23 chr13 29493807 29494154 -72379015 - LTR43 LTR ERV1 -59 461 195 821 177 146 42 chr13 29494368 29494475 -72378694 + MER4D LTR ERV1 680 774 -129 2416 126 20 3 chr13 29494475 29494833 -72378336 - THE1B LTR MaLR 0 364 1 821 177 146 42 chr13 29494833 29494917 -72378252 + MER4D LTR ERV1 774 891 -12 250 290 97 41 chr13 29495395 29495540 -72377629 + HAL1 LINE L1 349 501 -2006 2043 150 33 31 chr13 29495573 29495932 -72377237 - THE1B LTR MaLR 0 364 5 2054 130 6 62 chr13 29497499 29497852 -72375317 - MER1B DNA MER1_type 0 339 7 311 250 14 0 chr13 29497865 29497937 -72375232 - U6 snRNA snRNA -31 76 4 414 349 13 13 chr13 29498930 29499082 -72374087 + MER91A DNA MER1_type 2 153 -43 24 0 0 0 chr13 29499563 29499587 -72373582 + AT_rich Low_complexity Low_complexity 1 24 0 334 286 6 30 chr13 29499605 29499747 -72373422 + (TA)n Simple_repeat Simple_repeat 2 141 -24 297 0 0 0 chr13 29499747 29499780 -72373389 + (TG)n Simple_repeat Simple_repeat 2 34 0 334 286 6 30 chr13 29499780 29499805 -72373364 + (TA)n Simple_repeat Simple_repeat 141 165 0 24 0 0 0 chr13 29500441 29500465 -72372704 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 29500819 29500848 -72372321 + AT_rich Low_complexity Low_complexity 1 29 0 320 310 31 85 chr13 29501497 29501755 -72371414 - MIR SINE MIR -16 246 3 1092 221 32 59 chr13 29504080 29504233 -72368936 + MSTD LTR MaLR 1 157 -239 2187 73 24 3 chr13 29504233 29504520 -72368649 + AluY SINE Alu 1 293 -18 1092 221 32 59 chr13 29504520 29504847 -72368322 + MSTD LTR MaLR 157 396 0 213 310 17 0 chr13 29504930 29504988 -72368181 + L2 LINE L2 3250 3308 -5 21 0 0 0 chr13 29505014 29505035 -72368134 + AT_rich Low_complexity Low_complexity 1 21 0 1591 224 43 6 chr13 29506026 29506378 -72366791 - MLT1A1 LTR MaLR 0 365 1 26 30 0 0 chr13 29506493 29506526 -72366643 + AT_rich Low_complexity Low_complexity 1 33 0 2379 74 0 0 chr13 29508042 29508367 -72364802 - AluY SINE Alu 0 311 1 317 319 75 65 chr13 29508652 29509195 -72363974 - L2 LINE L2 -1201 2113 1565 186 167 0 0 chr13 29509255 29509291 -72363878 + T-rich Low_complexity Low_complexity 1 36 0 185 233 17 50 chr13 29510122 29510164 -72363005 + L3b LINE CR1 1526 1567 -16 2363 59 3 0 chr13 29510164 29510502 -72362667 - AluY SINE Alu 0 311 1 185 233 17 50 chr13 29510502 29510519 -72362650 + L3b LINE CR1 1567 1583 0 498 271 93 100 chr13 29510520 29510940 -72362229 - LTR33A LTR ERVL 0 523 107 1831 230 98 29 chr13 29511501 29512198 -72360971 - L1MDa LINE L1 -4434 2106 1362 901 279 92 45 chr13 29512195 29512664 -72360505 - L1MDa LINE L1 -5914 629 139 * 932 235 39 0 chr13 29512679 29512883 -72360286 + MER20 DNA MER1_type 1 212 -7 312 403 16 0 chr13 29514138 29514267 -72358902 + L2 LINE L2 3107 3237 -35 2126 109 0 10 chr13 29514307 29514601 -72358568 + AluSg SINE Alu 1 291 -19 189 0 0 0 chr13 29514604 29514625 -72358544 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 315 197 26 26 chr13 29515214 29515290 -72357879 + Tigger2 DNA MER2_type 2 77 -2641 547 165 16 71 chr13 29515353 29515480 -72357689 + AluJo SINE Alu 4 123 -189 2377 214 11 11 chr13 29515499 29516070 -72357099 - L1PB3 LINE L1 -1693 4453 3883 5251 189 63 38 chr13 29516070 29517682 -72355487 + L1PB3 LINE L1 4479 6150 -4 919 207 16 0 chr13 29517689 29517877 -72355292 + AluJo SINE Alu 120 310 -2 339 65 0 0 chr13 29518010 29518056 -72355113 + (TG)n Simple_repeat Simple_repeat 1 46 0 704 177 0 7 chr13 29518364 29518511 -72354658 + CT-rich Low_complexity Low_complexity 2 147 0 763 185 8 0 chr13 29518511 29518641 -72354528 - FLAM_A SINE Alu -1 132 2 985 131 17 0 chr13 29518705 29518880 -72354289 + CT-rich Low_complexity Low_complexity 3 180 0 2005 245 35 53 chr13 29518908 29519508 -72353661 - MER77 LTR ERV1 -8 597 9 594 312 85 7 chr13 29519531 29519813 -72353356 - L1ME3 LINE L1 -24 6138 5835 502 243 81 0 chr13 29519821 29519994 -72353175 + L1M4 LINE L1 3750 3936 -2210 493 264 159 64 chr13 29520031 29520451 -72352718 - L1ME3 LINE L1 -371 5791 5332 237 70 0 0 chr13 29520523 29520566 -72352603 + L1M4 LINE L1 5258 5300 -846 256 257 29 9 chr13 29520632 29520737 -72352432 + (TA)n Simple_repeat Simple_repeat 1 107 0 1063 246 74 36 chr13 29520908 29521461 -72351708 - L1ME3 LINE L1 -1329 4817 4244 1433 206 105 34 chr13 29521570 29522980 -72350189 - L1PBa LINE L1 -5204 1659 6 1574 222 33 18 chr13 29523962 29524295 -72348874 + MLT1A1 LTR MaLR 28 365 0 474 208 10 10 chr13 29524767 29524863 -72348306 + MLT1C LTR MaLR 372 467 0 321 316 84 7 chr13 29524956 29525111 -72348058 + MER69A DNA AcHobo 10 176 -1 6246 149 59 14 chr13 29525367 29526545 -72346624 + Tigger3b DNA MER2_type 1 1231 0 2822 98 62 7 chr13 29526640 29527060 -72346109 - MLT2A1 LTR ERVL -1 443 1 268 359 47 26 chr13 29527268 29527460 -72345709 - L2 LINE L2 -989 2325 2130 25 0 0 0 chr13 29527543 29527568 -72345601 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr13 29528008 29528043 -72345126 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 29528302 29528324 -72344845 + AT_rich Low_complexity Low_complexity 1 22 0 180 125 0 0 chr13 29528593 29528625 -72344544 + (TTC)n Simple_repeat Simple_repeat 2 33 0 195 42 0 0 chr13 29529316 29529340 -72343829 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 378 221 47 12 chr13 29529346 29529432 -72343737 - L2 LINE L2 -1 3312 3224 22 35 0 0 chr13 29529641 29529670 -72343499 + AT_rich Low_complexity Low_complexity 1 29 0 225 330 34 17 chr13 29529687 29529805 -72343364 - L2 LINE L2 -495 2819 2700 336 316 76 51 chr13 29529810 29530047 -72343122 - MIR SINE MIR 0 262 20 2318 164 36 2 chr13 29530113 29530527 -72342642 - MSTA LTR MaLR 0 428 1 1931 214 86 8 chr13 29530970 29531447 -72341722 - MLT2B2 LTR ERVL -1 514 1 1693 192 0 10 chr13 29532221 29532518 -72340651 - AluJb SINE Alu -17 295 2 820 207 57 141 chr13 29533609 29534048 -72339121 + MER31B LTR ERV1 22 423 -43 532 304 45 32 chr13 29535681 29535713 -72337456 + HAL1 LINE L1 1853 1883 -624 1160 214 55 78 chr13 29535713 29536096 -72337073 - MLT1A2 LTR MaLR 0 374 1 532 304 45 32 chr13 29536096 29536419 -72336750 + HAL1 LINE L1 1883 2211 -296 221 270 0 16 chr13 29536718 29536781 -72336388 + A-rich Low_complexity Low_complexity 4 65 0 191 313 0 16 chr13 29536790 29536854 -72336315 + L2 LINE L2 1362 1424 -1890 355 347 70 86 chr13 29537718 29538343 -72334826 + L2 LINE L2 2257 2871 -443 1839 259 95 52 chr13 29538707 29539774 -72333395 - L1MDa LINE L1 -2189 4351 3332 375 23 0 0 chr13 29539774 29539818 -72333351 + (TA)n Simple_repeat Simple_repeat 1 44 0 1960 113 0 7 chr13 29539819 29540102 -72333067 - AluY SINE Alu -30 281 1 1839 259 95 52 chr13 29540102 29540758 -72332411 - L1MDa LINE L1 -3207 3333 2556 2020 144 29 47 chr13 29541495 29541533 -72331636 + THE1C LTR MaLR 1 38 -337 2048 128 0 3 chr13 29541533 29541823 -72331346 - AluSx SINE Alu -3 309 21 2020 144 29 47 chr13 29541823 29542166 -72331003 + THE1C LTR MaLR 38 375 0 1070 258 87 43 chr13 29542747 29544263 -72328906 - L1MDa LINE L1 -2463 4077 2351 1451 241 111 29 chr13 29544492 29544704 -72328465 + L1MB5 LINE L1 5558 5751 -423 315 0 0 0 chr13 29544704 29544739 -72328430 + (CA)n Simple_repeat Simple_repeat 2 36 0 1451 241 111 29 chr13 29544739 29545097 -72328072 + L1MB5 LINE L1 5751 6172 -2 1602 154 4 26 chr13 29545319 29545585 -72327584 - MER4E LTR ERV1 -3 776 517 2436 102 18 21 chr13 29545663 29546045 -72327124 - L1MA1 LINE L1 -16 6286 5906 3346 160 61 8 chr13 29546045 29546639 -72326530 - MER4D LTR ERV1 -278 625 1 22 0 0 0 chr13 29548075 29548097 -72325072 + AT_rich Low_complexity Low_complexity 1 22 0 2311 137 11 6 chr13 29549192 29549549 -72323620 + THE1B LTR MaLR 6 364 0 867 206 100 74 chr13 29549596 29550068 -72323101 + MER39 LTR ERV1 1 707 0 926 184 55 78 chr13 29550183 29550492 -72322677 - MER33 DNA MER1_type -22 302 1 575 196 89 0 chr13 29550698 29550810 -72322359 - FLAM_A SINE Alu -11 122 1 282 265 224 7 chr13 29551192 29551339 -72321830 + MIR SINE MIR 84 262 0 23 0 0 0 chr13 29551441 29551464 -72321705 + AT_rich Low_complexity Low_complexity 1 23 0 682 213 85 6 chr13 29552182 29552346 -72320823 - MER5B DNA MER1_type -1 177 1 21 57 0 0 chr13 29553189 29553224 -72319945 + AT_rich Low_complexity Low_complexity 1 35 0 28 61 0 0 chr13 29553663 29553712 -72319457 + AT_rich Low_complexity Low_complexity 1 49 0 475 265 42 84 chr13 29554119 29554357 -72318812 + HAL1 LINE L1 17 244 -2263 1300 206 102 83 chr13 29554746 29554775 -72318394 + MLT1D LTR MaLR 9 36 -469 2417 70 0 3 chr13 29554775 29555087 -72318082 - AluY SINE Alu 0 311 1 1300 206 102 83 chr13 29555087 29555537 -72317632 + MLT1D LTR MaLR 36 497 -8 2083 107 10 10 chr13 29555624 29555924 -72317245 - AluSx SINE Alu -8 304 5 4422 212 42 24 chr13 29606125 29607765 -72265404 + L1M1 LINE L1 2491 4167 -3398 5375 144 2 2 chr13 29607768 29608624 -72264545 - L1PA15 LINE L1 0 6165 5310 3653 201 19 16 chr13 29608622 29608645 -72264524 + L1M1 LINE L1 4153 4174 -3391 * 2228 101 0 3 chr13 29608645 29608942 -72264227 - AluSc SINE Alu -12 297 2 3653 201 19 16 chr13 29608942 29609807 -72263362 + L1M1 LINE L1 4174 5044 -2521 226 380 22 22 chr13 29610105 29610197 -72262972 + MIR SINE MIR 3 94 -168 639 288 81 28 chr13 29610439 29610724 -72262445 + LTR33 LTR ERVL 209 508 -13 25 31 0 0 chr13 29610955 29610987 -72262182 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr13 29611876 29611900 -72261269 + AT_rich Low_complexity Low_complexity 1 24 0 32 67 0 0 chr13 29614298 29614358 -72258811 + AT_rich Low_complexity Low_complexity 1 60 0 6163 163 17 41 chr13 29614402 29615318 -72257851 + L1P4 LINE L1 4073 4929 -1236 2199 110 3 3 chr13 29615318 29615628 -72257541 + AluSx SINE Alu 1 310 -2 6163 163 17 41 chr13 29615628 29616294 -72256875 + L1P4 LINE L1 4929 5610 -555 755 165 0 0 chr13 29616294 29616415 -72256754 + L1P4 LINE L1 5545 5665 -500 207 139 0 0 chr13 29616431 29616467 -72256702 + (TA)n Simple_repeat Simple_repeat 1 36 0 843 162 7 73 chr13 29616485 29616695 -72256474 + MLT2A2 LTR ERVL 293 453 0 3589 260 58 36 chr13 29616695 29617290 -72255879 + L1PB3 LINE L1 771 1351 -4852 2820 10 0 0 chr13 29617290 29617601 -72255568 + AluYb8 SINE Alu 1 311 -7 2030 154 0 0 chr13 29617611 29617916 -72255253 + AluSc SINE Alu 3 307 -2 3589 260 58 36 chr13 29617916 29619087 -72254082 + L1PB3 LINE L1 1359 2596 -3607 * 26457 142 7 9 chr13 29619085 29625461 -72247708 + L1PA8A LINE L1 5 6428 -18 207 0 0 0 chr13 29625465 29625488 -72247681 + (TAA)n Simple_repeat Simple_repeat 2 24 0 10703 192 49 25 chr13 29625490 29626160 -72247009 + L1PB3 LINE L1 2589 3242 -2969 188 83 0 28 chr13 29626160 29626196 -72246973 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 10703 192 49 25 chr13 29626196 29628225 -72244944 + L1PB3 LINE L1 3242 5392 -819 2462 54 0 0 chr13 29628225 29628520 -72244649 + AluY SINE Alu 1 295 -16 10703 192 49 25 chr13 29628520 29629358 -72243811 + L1PB3 LINE L1 5392 6209 -2 34 24 0 0 chr13 29629483 29629524 -72243645 + AT_rich Low_complexity Low_complexity 1 41 0 2824 10 0 0 chr13 29629578 29629890 -72243279 - AluYb8 SINE Alu -6 312 1 1095 222 4 11 chr13 29630817 29631078 -72242091 - L1M4 LINE L1 -3242 2904 2646 507 33 0 0 chr13 29632636 29632697 -72240472 + (TA)n Simple_repeat Simple_repeat 2 62 0 351 0 0 0 chr13 29632696 29632735 -72240434 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 21 0 0 0 chr13 29634006 29634027 -72239142 + AT_rich Low_complexity Low_complexity 1 21 0 262 330 11 96 chr13 29634816 29635004 -72238165 + L2 LINE L2 2584 2755 -559 324 234 117 0 chr13 29635290 29635384 -72237785 + L2 LINE L2 3205 3309 -4 2253 121 0 9 chr13 29636098 29636445 -72236724 - HERVH LTR ERV1 -3878 3835 3492 890 140 7 0 chr13 29636435 29636585 -72236584 - HERVH LTR ERV1 -4423 3290 3140 * 10886 83 6 8 chr13 29636579 29638317 -72234852 - HERVH LTR ERV1 -4726 2987 1251 2909 50 5 8 chr13 29638317 29638700 -72234469 - LTR7 LTR ERV1 -68 382 1 4786 216 34 17 chr13 29638700 29639075 -72234094 - L1MC1 LINE L1 -352 5964 5597 6980 97 11 2 chr13 29639075 29640035 -72233134 + LTR5 LTR ERVK 1 969 0 4786 216 34 17 chr13 29640035 29641808 -72231361 - L1MC1 LINE L1 -719 5597 3782 28 48 0 0 chr13 29641815 29641857 -72231312 + AT_rich Low_complexity Low_complexity 1 42 0 273 432 0 32 chr13 29642915 29643070 -72230099 + L2 LINE L2 3117 3266 -6 208 308 0 0 chr13 29643662 29643727 -72229442 + L2 LINE L2 2997 3061 -252 2064 165 86 8 chr13 29644523 29644918 -72228251 - MSTB LTR MaLR 0 426 1 1178 245 77 9 chr13 29644945 29645284 -72227885 - MLT1D LTR MaLR -4 501 140 501 313 96 59 chr13 29645929 29646252 -72226917 - L1MC1 LINE L1 -4880 1239 905 229 318 36 27 chr13 29646989 29647099 -72226070 + L2 LINE L2 3154 3264 -8 886 247 0 5 chr13 29647483 29647669 -72225500 - MLT1A1 LTR MaLR -180 185 1 1443 262 58 33 chr13 29647674 29648774 -72224395 + L1ME1 LINE L1 4920 6157 -9 1989 179 174 116 chr13 29648824 29649105 -72224064 + L1MC3 LINE L1 6793 7056 -729 225 247 94 12 chr13 29649105 29649190 -72223979 + MLT1F1 LTR MaLR 42 133 -434 1989 179 174 116 chr13 29649190 29649612 -72223557 + L1MC3 LINE L1 7056 7626 -159 398 235 157 0 chr13 29649701 29649816 -72223353 + L1MC3 LINE L1 6788 6920 -865 931 134 0 35 chr13 29649847 29650019 -72223150 + L1MC3 LINE L1 7620 7785 0 21 36 0 0 chr13 29651842 29651870 -72221299 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 29652829 29652853 -72220316 + AT_rich Low_complexity Low_complexity 1 24 0 251 261 0 0 chr13 29652973 29653042 -72220127 + (CTA)n Simple_repeat Simple_repeat 2 70 0 5747 108 25 12 chr13 29653079 29654427 -72218742 - L1PA13 LINE L1 0 6163 4795 1915 272 60 43 chr13 29656604 29657473 -72215696 + L1M4 LINE L1 4332 5154 -992 1963 126 10 7 chr13 29657473 29657766 -72215403 + AluSq SINE Alu 1 294 -19 1915 272 60 43 chr13 29657766 29657994 -72215175 + L1M4 LINE L1 5154 5377 -769 183 327 140 0 chr13 29658337 29658444 -72214725 + L2 LINE L2 2963 3084 -229 1522 47 0 0 chr13 29658490 29658790 -72214379 - L1PA5 LINE L1 -4 6150 5798 21 0 0 0 chr13 29660077 29660098 -72213071 + AT_rich Low_complexity Low_complexity 1 21 0 435 281 116 18 chr13 29660248 29660412 -72212757 - MIR SINE MIR -74 188 9 283 250 150 36 chr13 29660598 29660738 -72212431 - L2 LINE L2 0 3313 3158 309 258 0 30 chr13 29661401 29661467 -72211702 + Tigger3b DNA MER2_type 5 68 -1163 1165 155 163 47 chr13 29661468 29661726 -72211443 - AluJo SINE Alu -16 296 9 6366 120 31 65 chr13 29661733 29662942 -72210227 + Tigger3b DNA MER2_type 65 1231 0 953 228 28 5 chr13 29663483 29663694 -72209475 + MER58A DNA MER1_type 1 216 -8 182 416 26 0 chr13 29663862 29663939 -72209230 + L2 LINE L2 3200 3278 -35 262 355 137 0 chr13 29665696 29665820 -72207349 - MIR3 SINE MIR -17 191 51 1153 307 43 38 chr13 29666299 29667061 -72206108 - L2 LINE L2 0 3313 2552 683 238 41 17 chr13 29667072 29667244 -72205925 + MER8 DNA MER2_type 2 177 -62 246 224 103 0 chr13 29667220 29667278 -72205891 + MER2 DNA MER2_type 281 344 -1 * 386 140 0 0 chr13 29667292 29667349 -72205820 - Tigger2 DNA MER2_type -2661 57 1 1020 261 68 12 chr13 29667350 29667675 -72205494 - L2 LINE L2 -776 2538 2196 235 261 15 0 chr13 29667736 29667801 -72205368 - L1MEd LINE L1 -5394 725 660 406 347 65 44 chr13 29667959 29668417 -72204752 + L1MB2 LINE L1 2576 3043 -3103 31 58 0 0 chr13 29668599 29668651 -72204518 + AT_rich Low_complexity Low_complexity 1 52 0 303 318 12 12 chr13 29668806 29668979 -72204190 + (TA)n Simple_repeat Simple_repeat 1 173 0 21 0 0 0 chr13 29669194 29669215 -72203954 + AT_rich Low_complexity Low_complexity 1 21 0 4820 217 25 23 chr13 29669243 29671346 -72201823 + L1MB2 LINE L1 3985 6094 -77 320 324 116 34 chr13 29671418 29671884 -72201285 + L1MC4a LINE L1 4329 4832 -1314 1042 166 215 12 chr13 29671964 29672211 -72200958 + AluSx SINE Alu 1 297 -5 485 319 84 26 chr13 29672615 29673188 -72199981 + L1MC4a LINE L1 5304 5909 -1899 438 200 30 20 chr13 29673693 29673793 -72199376 - L2 LINE L2 -1 3312 3212 301 298 39 60 chr13 29674112 29674313 -72198856 - MIR SINE MIR -45 217 22 23 54 0 0 chr13 29674644 29674681 -72198488 + AT_rich Low_complexity Low_complexity 1 37 0 254 351 57 18 chr13 29676360 29676523 -72196646 + MIR SINE MIR 13 177 -69 2122 249 65 75 chr13 29677997 29679486 -72193683 + L1ME2 LINE L1 2611 4085 -2061 430 240 10 0 chr13 29679509 29679613 -72193556 - MER70B LTR ERVL -18 560 456 383 192 48 64 chr13 29680054 29680179 -72192990 + L1ME2 LINE L1 4078 4200 -1946 1320 275 50 16 chr13 29680220 29680776 -72192393 + L1ME2 LINE L1 4276 4850 -1296 322 248 24 80 chr13 29680789 29680914 -72192255 + L1ME2 LINE L1 4906 5023 -1123 377 205 262 22 chr13 29681011 29681233 -72191936 + L1ME2 LINE L1 5161 5432 -743 2229 166 42 7 chr13 29681233 29681642 -72191527 + MER39B LTR ERV1 1 423 -230 1029 25 57 6 chr13 29681649 29681807 -72191362 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 38931 71 20 3 chr13 29681816 29687857 -72185312 - L1PA5 LINE L1 -7 6147 1 1061 199 8 25 chr13 29687863 29688099 -72185070 + MER39B LTR ERV1 422 653 0 1970 245 73 20 chr13 29688099 29688314 -72184855 + L1ME2 LINE L1 5429 5631 -533 2186 149 8 3 chr13 29688314 29688676 -72184493 - THE1B LTR MaLR 0 364 1 1970 245 73 20 chr13 29688676 29689158 -72184011 + L1ME2 LINE L1 5631 6163 -1 230 369 47 27 chr13 29689411 29689560 -72183609 + L2 LINE L2 2936 3087 -185 239 280 110 10 chr13 29689848 29689948 -72183221 - MIR SINE MIR -7 255 146 2148 156 31 14 chr13 29691401 29691759 -72181410 - THE1B LTR MaLR 0 364 1 1468 246 55 19 chr13 29692617 29693123 -72180046 - LTR28 LTR ERV1 -1 511 1 225 270 148 0 chr13 29694391 29694459 -72178710 + MIR SINE MIR 72 141 -67 2647 133 51 0 chr13 29694531 29694944 -72178225 + MER57B LTR ERV1 1 434 0 1687 102 188 82 chr13 29695096 29695500 -72177669 - LTR7 LTR ERV1 0 450 4 1400 263 36 6 chr13 29695711 29696068 -72177101 - MER77 LTR ERV1 -2 603 236 693 264 13 63 chr13 29696160 29696399 -72176770 - MER77 LTR ERV1 -378 227 1 378 296 43 21 chr13 29696567 29696753 -72176416 - L1MC4a LINE L1 -1898 5910 5721 22 0 0 0 chr13 29699280 29699302 -72173867 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 29700497 29700526 -72172643 + AT_rich Low_complexity Low_complexity 1 29 0 210 268 0 0 chr13 29701468 29701524 -72171645 + T-rich Low_complexity Low_complexity 1 56 0 2149 118 0 10 chr13 29701909 29702223 -72170946 + AluSq SINE Alu 3 313 0 21 36 0 0 chr13 29702410 29702438 -72170731 + AT_rich Low_complexity Low_complexity 1 28 0 263 308 154 35 chr13 29702745 29702914 -72170255 + MIR SINE MIR 8 196 -66 310 250 119 54 chr13 29703447 29703615 -72169554 - LTR50 LTR ERVL -94 701 523 228 224 149 0 chr13 29703635 29703702 -72169467 - LTR50 LTR ERVL -715 80 4 1574 214 26 0 chr13 29704178 29704482 -72168687 + AluJo SINE Alu 1 312 0 752 265 126 5 chr13 29704818 29705033 -72168136 + MIR SINE MIR 12 252 -10 2259 158 53 12 chr13 29705035 29705446 -72167723 - MSTA LTR MaLR 0 428 1 301 297 29 58 chr13 29705492 29705630 -72167539 + MIR SINE MIR 58 191 -71 209 216 0 0 chr13 29706432 29706469 -72166700 + L2 LINE L2 3214 3250 -22 463 211 29 29 chr13 29706661 29706765 -72166404 + MER5A DNA MER1_type 9 112 -77 356 318 142 18 chr13 29708085 29708359 -72164810 - L2 LINE L2 0 3313 3006 487 343 60 41 chr13 29708372 29708737 -72164432 - L2 LINE L2 -454 2860 2489 216 0 0 0 chr13 29709406 29709430 -72163739 + (TA)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chr13 29710373 29710397 -72162772 + (ATG)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr13 29711697 29711727 -72161442 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 216 67 0 0 chr13 29714753 29714783 -72158386 + (TTG)n Simple_repeat Simple_repeat 2 31 0 329 102 17 0 chr13 29714855 29714914 -72158255 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 207 0 0 0 chr13 29715009 29715032 -72158137 + (GA)n Simple_repeat Simple_repeat 2 24 0 470 17 17 0 chr13 29715054 29715113 -72158056 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 481 257 103 51 chr13 29715361 29715848 -72157321 - HAL1 LINE L1 -1045 1462 951 574 345 76 20 chr13 29717223 29717617 -72155552 - L2 LINE L2 -469 2845 2430 23 0 0 0 chr13 29717643 29717666 -72155503 + AT_rich Low_complexity Low_complexity 1 23 0 594 165 12 35 chr13 29719094 29719264 -72153905 + T-rich Low_complexity Low_complexity 3 168 0 520 315 25 0 chr13 29719270 29719432 -72153737 - AluJ SINE Alu 0 302 137 232 116 0 47 chr13 29719432 29719471 -72153698 - AluJ SINE Alu -166 136 100 2670 194 46 98 chr13 29719471 29720236 -72152933 - MER50 LTR ERV1 0 734 10 623 178 0 0 chr13 29720242 29720343 -72152826 - AluJ SINE Alu -209 103 3 881 305 37 17 chr13 29720345 29720779 -72152390 - MLT1J1 LTR MaLR -2 448 8 295 323 167 5 chr13 29722994 29723186 -72149983 + MIR SINE MIR 25 247 -15 643 266 52 47 chr13 29724469 29724621 -72148548 + MIR SINE MIR 2 157 -105 3929 135 28 14 chr13 29724621 29724898 -72148271 + L1PA15 LINE L1 5505 5777 -388 2385 81 0 0 chr13 29724898 29725196 -72147973 + AluSc SINE Alu 1 298 -11 3929 135 28 14 chr13 29725196 29725570 -72147599 + L1PA15 LINE L1 5777 6165 0 643 266 52 47 chr13 29725570 29725650 -72147519 + MIR SINE MIR 157 235 -27 652 233 129 0 chr13 29725886 29726049 -72147120 - MER5A DNA MER1_type -1 188 5 391 287 226 0 chr13 29728998 29729193 -72143976 - MIR SINE MIR -22 240 2 345 154 33 0 chr13 29729716 29729807 -72143362 + (TA)n Simple_repeat Simple_repeat 2 95 0 492 333 72 13 chr13 29729809 29730046 -72143123 - MIR SINE MIR -10 252 2 486 0 0 0 chr13 29730310 29730364 -72142805 + (TA)n Simple_repeat Simple_repeat 2 55 0 2060 122 3 3 chr13 29730510 29730821 -72142348 - AluSx SINE Alu -1 311 1 184 98 0 78 chr13 29730887 29730938 -72142231 + (CCCCCT)n Simple_repeat Simple_repeat 4 50 0 3191 233 43 15 chr13 29733556 29734432 -72138737 - L1ME1 LINE L1 -5 6161 5261 34 72 0 0 chr13 29734659 29734728 -72138441 + AT_rich Low_complexity Low_complexity 1 69 0 1739 172 0 0 chr13 29735917 29736202 -72136967 + AluJb SINE Alu 6 290 -22 184 256 90 13 chr13 29737817 29737895 -72135274 - MIR SINE MIR -13 249 166 950 218 38 19 chr13 29739831 29740042 -72133127 - MER58A DNA MER1_type -1 223 9 23 0 0 0 chr13 29743004 29743027 -72130142 + AT_rich Low_complexity Low_complexity 1 23 0 1919 100 82 4 chr13 29743029 29743299 -72129870 + AluSg SINE Alu 1 291 -19 25 0 0 0 chr13 29743624 29743649 -72129520 + AT_rich Low_complexity Low_complexity 1 25 0 463 307 62 0 chr13 29743835 29744014 -72129155 - MIR SINE MIR -72 190 1 2303 175 49 9 chr13 29744170 29744615 -72128554 + MLT1C LTR MaLR 1 463 -4 2374 105 0 0 chr13 29744861 29745174 -72127995 - AluSq SINE Alu 0 313 1 309 293 50 56 chr13 29745674 29745872 -72127297 - LTR67 LTR ERVL -2 555 359 251 243 95 27 chr13 29746236 29746310 -72126859 + L2 LINE L2 3171 3249 -23 197 282 28 42 chr13 29746778 29746849 -72126320 - L2 LINE L2 0 3272 3203 198 0 0 0 chr13 29747131 29747153 -72126016 + (A)n Simple_repeat Simple_repeat 1 22 0 1391 193 51 0 chr13 29747719 29747852 -72125317 - AluJo SINE Alu -45 267 142 228 67 0 0 chr13 29747852 29747882 -72125287 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1391 193 51 0 chr13 29747882 29748002 -72125167 - AluJo SINE Alu -170 142 1 658 253 76 22 chr13 29748428 29748653 -72124516 - MER102b DNA MER1_type -12 329 93 239 234 104 13 chr13 29748671 29748748 -72124421 - MER102b DNA MER1_type -223 118 35 3252 36 0 0 chr13 29748950 29749335 -72123834 + L1PA5 LINE L1 5763 6147 -7 360 0 0 0 chr13 29749337 29749377 -72123792 + (TA)n Simple_repeat Simple_repeat 1 40 0 25 31 0 0 chr13 29749647 29749679 -72123490 + AT_rich Low_complexity Low_complexity 1 32 0 2708 170 30 48 chr13 29749847 29750411 -72122758 - MLT2B3 LTR ERVL 0 554 1 23 0 0 0 chr13 29750898 29750921 -72122248 + AT_rich Low_complexity Low_complexity 1 23 0 625 290 6 6 chr13 29751323 29751499 -72121670 - MER5B DNA MER1_type -2 176 1 195 42 0 0 chr13 29751646 29751670 -72121499 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 198 281 94 16 chr13 29752711 29752775 -72120394 - MIR3 SINE MIR -8 200 132 180 176 0 0 chr13 29752787 29752821 -72120348 - L2 LINE L2 -3 3310 3277 355 263 50 0 chr13 29753287 29753386 -72119783 - L1ME2 LINE L1 -27 6137 6034 987 221 19 5 chr13 29753393 29753601 -72119568 + MER58A DNA MER1_type 3 213 -11 1668 260 28 15 chr13 29753658 29753895 -72119274 - L1ME2 LINE L1 -230 5934 5702 1711 209 18 28 chr13 29753895 29754292 -72118877 + MSTD LTR MaLR 4 396 0 3892 128 19 3 chr13 29754301 29754894 -72118275 - LTR43 LTR ERV1 0 602 1 1668 260 28 15 chr13 29754894 29755180 -72117989 - L1ME2 LINE L1 -469 5695 5394 259 366 0 0 chr13 29755440 29755541 -72117628 - L2 LINE L2 -49 3264 3164 507 255 46 0 chr13 29756413 29756430 -72116739 - L1MA10 LINE L1 0 6334 6318 2766 227 38 39 chr13 29756430 29757456 -72115713 - L1ME1 LINE L1 -11 6155 5149 31 0 0 0 chr13 29757653 29757684 -72115485 + AT_rich Low_complexity Low_complexity 1 31 0 1897 117 26 0 chr13 29757813 29758113 -72115056 + AluSx SINE Alu 16 322 0 21 0 0 0 chr13 29758228 29758249 -72114920 + AT_rich Low_complexity Low_complexity 1 21 0 4552 87 45 43 chr13 29758600 29759290 -72113879 + LTR8 LTR ERV1 1 691 0 23 117 0 0 chr13 29760190 29760318 -72112851 + AT_rich Low_complexity Low_complexity 1 128 0 21 36 0 0 chr13 29760541 29760569 -72112600 + AT_rich Low_complexity Low_complexity 1 28 0 302 305 67 0 chr13 29760597 29760702 -72112467 - MIR3 SINE MIR -36 172 61 241 267 13 53 chr13 29760710 29760785 -72112384 - L2 LINE L2 0 3272 3201 1392 219 68 50 chr13 29761521 29761964 -72111205 - MER74B LTR ERVL -103 519 69 250 282 47 0 chr13 29762203 29762288 -72110881 + L1MC4 LINE L1 6614 6702 -1340 393 243 0 0 chr13 29762304 29762411 -72110758 + (TA)n Simple_repeat Simple_repeat 1 107 0 1463 216 32 0 chr13 29762433 29762711 -72110458 - AluJb SINE Alu -25 287 1 231 314 0 0 chr13 29763401 29763471 -72109698 - HsTC2 DNA Tc2 -1815 83 14 422 363 18 67 chr13 29763486 29763875 -72109294 - L2 LINE L2 -428 2886 2517 308 301 189 0 chr13 29765253 29765396 -72107773 - MIR SINE MIR -23 239 70 2277 95 0 7 chr13 29765408 29765702 -72107467 + AluSx SINE Alu 1 292 -20 865 338 125 14 chr13 29765898 29766743 -72106426 - L2 LINE L2 0 3313 2375 247 294 0 0 chr13 29766743 29766811 -72106358 + (TG)n Simple_repeat Simple_repeat 1 68 0 284 261 96 26 chr13 29766861 29766976 -72106193 + L2 LINE L2 3191 3313 0 472 303 53 33 chr13 29767045 29767289 -72105880 - L2 LINE L2 -1080 2234 1986 1952 95 0 8 chr13 29768212 29768464 -72104705 + AluSc SINE Alu 1 250 -59 188 298 106 19 chr13 29768468 29768572 -72104597 + MIR SINE MIR 103 215 -47 199 339 0 0 chr13 29769183 29769242 -72103927 + MIR SINE MIR 32 90 -172 24 0 0 0 chr13 29770589 29770613 -72102556 + AT_rich Low_complexity Low_complexity 1 24 0 849 215 60 78 chr13 29770822 29771204 -72101965 - MER39 LTR ERV1 -74 633 259 292 211 44 56 chr13 29771189 29771279 -72101890 - LTR48B LTR ERV1 -555 89 1 * 2231 164 30 25 chr13 29771572 29772004 -72101165 + Tigger2a DNA MER2_type 1 434 0 361 276 114 0 chr13 29772039 29772144 -72101025 - MIR SINE MIR -30 232 116 1862 80 4 15 chr13 29772215 29772478 -72100691 - L1PA6 LINE L1 0 6154 5895 324 279 176 60 chr13 29772728 29772961 -72100208 + MIR SINE MIR 2 261 -1 2498 88 131 5 chr13 29773685 29774083 -72099086 + LTR7 LTR ERV1 1 448 -2 3177 87 0 23 chr13 29774085 29774555 -72098614 + HERVH LTR ERV1 1 459 -7254 14582 101 9 19 chr13 29774609 29776827 -72096342 + HERVH LTR ERV1 793 2987 -4726 972 127 7 0 chr13 29776821 29776971 -72096198 + HERVH LTR ERV1 3140 3290 -4423 * 3462 109 0 6 chr13 29776961 29777466 -72095703 + HERVH LTR ERV1 3492 3993 -3720 2331 166 7 25 chr13 29777452 29777920 -72095249 + HERVH LTR ERV1 3954 4374 -2749 * 3528 126 2 2 chr13 29777920 29778435 -72094734 + HERVH LTR ERV1 4635 5149 -2564 1440 120 19 0 chr13 29778436 29778652 -72094517 + HERVH LTR ERV1 5600 5819 -1894 * 2267 119 48 13 chr13 29778650 29779029 -72094140 + HERVH LTR ERV1 7322 7713 0 2530 80 131 5 chr13 29779029 29779427 -72093742 + LTR7 LTR ERV1 1 448 -2 25 31 0 0 chr13 29779566 29779598 -72093571 + AT_rich Low_complexity Low_complexity 1 32 0 211 358 159 23 chr13 29780100 29780446 -72092723 - L2 LINE L2 -340 2974 2582 658 158 50 127 chr13 29780451 29780672 -72092497 + MER3 DNA MER1_type 2 205 -4 6854 139 36 19 chr13 29780828 29782026 -72091143 - Tigger3b DNA MER2_type 0 1231 14 452 286 16 0 chr13 29782181 29782307 -72090862 - MER94 DNA DNA 0 134 7 21 0 0 0 chr13 29782348 29782369 -72090800 + AT_rich Low_complexity Low_complexity 1 21 0 2149 86 31 20 chr13 29784160 29784452 -72088717 + AluSc SINE Alu 1 295 -14 198 378 102 0 chr13 29785029 29785127 -72088042 - L2 LINE L2 -248 3024 2917 2226 116 134 8 chr13 29785599 29785979 -72087190 + MSTA LTR MaLR 1 428 0 1657 147 3 45 chr13 29786295 29786607 -72086562 - AluSq SINE Alu -10 303 5 204 267 69 30 chr13 29787062 29787163 -72086006 - MIR SINE MIR -64 198 94 2066 196 20 18 chr13 29787742 29788200 -72084969 + LTR40b LTR ERVL 4 462 0 951 193 0 6 chr13 29789545 29789721 -72083448 - AluJb SINE Alu -1 311 137 295 321 106 44 chr13 29791315 29791608 -72081561 + L2 LINE L2 2483 2793 -521 228 111 0 0 chr13 29792918 29792954 -72080215 + (TC)n Simple_repeat Simple_repeat 1 36 0 346 134 15 0 chr13 29794781 29794848 -72078321 - L1MA9 LINE L1 -1 6311 6244 1545 194 0 47 chr13 29794860 29795180 -72077989 - AluJb SINE Alu -6 306 2 356 221 139 0 chr13 29796715 29796801 -72076368 - L2 LINE L2 -1 3271 3174 272 356 7 14 chr13 29797673 29797819 -72075350 + CT-rich Low_complexity Low_complexity 1 145 0 1467 172 7 36 chr13 29798035 29798338 -72074831 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr13 29799684 29799705 -72073464 + AT_rich Low_complexity Low_complexity 1 21 0 556 265 95 9 chr13 29801451 29801662 -72071507 - MIR SINE MIR -10 252 24 494 301 75 0 chr13 29801676 29801822 -72071347 + MIR SINE MIR 31 187 -75 1292 114 0 6 chr13 29801939 29802115 -72071054 - AluSg SINE Alu -135 175 1 2160 166 49 42 chr13 29802115 29802568 -72070601 + Tigger1 DNA MER2_type 6 461 -1957 948 147 7 0 chr13 29802622 29802765 -72070404 + Tigger1 DNA MER2_type 1324 1467 -951 * 11214 136 25 20 chr13 29802760 29804674 -72068495 + Tigger1 DNA MER2_type 495 2417 -1 2363 51 0 0 chr13 29804851 29805144 -72068025 + L1PA7 LINE L1 5862 6154 0 184 277 205 24 chr13 29807672 29807755 -72065414 - L2 LINE L2 -4 3268 3171 934 203 92 103 chr13 29808305 29808674 -72064495 + MLT1A1 LTR MaLR 1 365 0 657 299 68 4 chr13 29808824 29809058 -72064111 + MIR SINE MIR 14 262 0 32 43 0 0 chr13 29809320 29809366 -72063803 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr13 29809431 29809452 -72063717 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 29810077 29810110 -72063059 + AT_rich Low_complexity Low_complexity 1 33 0 390 304 154 20 chr13 29810173 29810374 -72062795 + MIR SINE MIR 35 262 0 2048 148 23 0 chr13 29811249 29811594 -72061575 + L1MA3 LINE L1 5484 5836 -469 30 0 0 0 chr13 29811760 29811790 -72061379 + AT_rich Low_complexity Low_complexity 1 30 0 294 376 85 14 chr13 29811797 29812079 -72061090 + L2 LINE L2 2190 2491 -823 4152 186 36 25 chr13 29812148 29813425 -72059744 + L1PB4 LINE L1 4402 5682 -474 5756 268 41 65 chr13 29813445 29816801 -72056368 + L1PA12 LINE L1 8 3711 -3873 894 188 0 7 chr13 29816801 29816955 -72056214 + AluSg/x SINE Alu 143 295 -15 5756 268 41 65 chr13 29816955 29817731 -72055438 + L1PA12 LINE L1 3711 4504 -3080 4836 169 5 16 chr13 29817845 29818724 -72054445 + L1PA15 LINE L1 5294 6162 -3 649 134 27 9 chr13 29818726 29818838 -72054331 + L1PB4 LINE L1 5675 5788 -368 250 238 125 0 chr13 29818852 29818932 -72054237 - L1MC4 LINE L1 -1339 6703 6614 * 263 242 27 23 chr13 29818874 29818985 -72054184 + L1MC4 LINE L1 2007 6989 -1333 2081 139 11 11 chr13 29819024 29819384 -72053785 + L1PB4 LINE L1 5785 6144 -12 440 339 16 16 chr13 29820957 29821140 -72052029 - MER5A DNA MER1_type 0 189 7 495 245 184 22 chr13 29822164 29822356 -72050813 - MIR SINE MIR -14 248 34 2395 61 0 7 chr13 29822490 29822787 -72050382 + AluY SINE Alu 1 295 -16 3603 161 111 16 chr13 29822883 29823637 -72049532 - LTR1B LTR ERV1 0 826 1 402 21 0 0 chr13 29827654 29827701 -72045468 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 266 258 15 0 chr13 29829081 29829147 -72044022 - MER94 DNA DNA -67 67 1 23 0 0 0 chr13 29830841 29830864 -72042305 + AT_rich Low_complexity Low_complexity 1 23 0 788 268 103 0 chr13 29830891 29831115 -72042054 - MIR SINE MIR -15 247 1 252 0 0 0 chr13 29831765 29831793 -72041376 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3874 152 26 1 chr13 29831931 29832589 -72040580 + MER11B LTR ERVK 1 674 -562 348 325 98 45 chr13 29833135 29833381 -72039788 + MIR SINE MIR 3 261 -1 285 231 29 58 chr13 29834453 29834479 -72038690 + MLT1I LTR MaLR 344 369 -40 1699 220 123 57 chr13 29834479 29835253 -72037916 - LTR1B LTR ERV1 -1 825 1 285 231 29 58 chr13 29835253 29835330 -72037839 + MLT1I LTR MaLR 369 409 0 25 31 0 0 chr13 29836228 29836260 -72036909 + AT_rich Low_complexity Low_complexity 1 32 0 383 266 53 11 chr13 29837320 29837414 -72035755 + MER81 DNA DNA 17 114 0 378 0 0 0 chr13 29839444 29839486 -72033683 + (TTA)n Simple_repeat Simple_repeat 2 43 0 23 33 0 0 chr13 29840236 29840266 -72032903 + AT_rich Low_complexity Low_complexity 1 30 0 1010 125 74 0 chr13 29841002 29841178 -72031991 + THE1C LTR MaLR 185 373 -2 2528 143 35 38 chr13 29841180 29841826 -72031343 - L1P4 LINE L1 -435 5731 5093 27 29 0 0 chr13 29842509 29842543 -72030626 + AT_rich Low_complexity Low_complexity 1 34 0 310 151 27 14 chr13 29842842 29842915 -72030254 + GA-rich Low_complexity Low_complexity 2 75 0 217 151 38 0 chr13 29843300 29843353 -72029816 + CT-rich Low_complexity Low_complexity 2 56 0 257 246 49 0 chr13 29844680 29844741 -72028428 + MER46C DNA MER2_type 1 64 -274 795 273 23 8 chr13 29844823 29845079 -72028090 + MER46C DNA MER2_type 79 338 0 3850 129 20 61 chr13 29845839 29846545 -72026624 - L1PA13 LINE L1 -11 6152 5476 252 51 0 0 chr13 29846545 29846584 -72026585 - AluJb SINE Alu -2 306 268 1334 118 29 13 chr13 29846584 29846854 -72026315 - L1PA13 LINE L1 -678 5490 5217 545 202 8 0 chr13 29846855 29846974 -72026195 + L1P LINE L1 4256 4375 -1771 * 2078 258 24 6 chr13 29846973 29847640 -72025529 - L1P3 LINE L1 -4247 2214 1545 277 188 0 14 chr13 29847620 29847689 -72025480 - L1 LINE L1 -1087 5059 4992 * 1690 175 3 7 chr13 29847700 29847986 -72025183 - AluJb SINE Alu -27 285 1 3408 187 5 0 chr13 29847986 29848621 -72024548 - L1PA13 LINE L1 -1130 5016 4379 260 167 0 0 chr13 29848625 29848673 -72024496 - L1PA13 LINE L1 -1879 4267 4220 * 544 261 22 0 chr13 29848669 29848807 -72024362 + L1P LINE L1 1894 2034 -4112 333 300 72 60 chr13 29849941 29850191 -72022978 + Charlie8 DNA MER1_type 1 253 -2164 253 245 32 64 chr13 29850186 29850280 -72022889 + Charlie8 DNA MER1_type 2326 2416 -1 * 252 325 17 42 chr13 29852692 29852812 -72020357 - L2 LINE L2 -615 2699 2583 21 0 0 0 chr13 29854073 29854094 -72019075 + AT_rich Low_complexity Low_complexity 1 21 0 2291 102 0 0 chr13 29854159 29854462 -72018707 - AluSg SINE Alu -7 303 1 241 266 178 47 chr13 29855341 29855407 -72017762 + MIR SINE MIR 72 128 -134 2071 114 3 7 chr13 29855407 29855697 -72017472 + AluSx SINE Alu 1 289 -23 241 266 178 47 chr13 29855697 29855799 -72017370 + MIR SINE MIR 128 262 0 25 65 0 0 chr13 29855817 29855863 -72017306 + AT_rich Low_complexity Low_complexity 1 46 0 257 282 99 7 chr13 29856521 29856663 -72016506 + L1MC4a LINE L1 5760 5914 -1894 242 260 202 55 chr13 29856679 29856971 -72016198 + L1MC4a LINE L1 5844 6178 -1630 332 339 109 72 chr13 29857340 29857955 -72015214 + L2 LINE L2 2261 2940 -373 2895 116 5 2 chr13 29857955 29858387 -72014782 - L1PB2 LINE L1 -10 6141 5709 332 339 109 72 chr13 29858387 29858726 -72014443 + L2 LINE L2 2940 3265 -48 2285 101 0 3 chr13 29858925 29859223 -72013946 + AluSg SINE Alu 1 297 -13 42 57 0 0 chr13 29859233 29859303 -72013866 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 29859316 29859337 -72013832 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 29859827 29859849 -72013320 + AT_rich Low_complexity Low_complexity 1 22 0 2184 149 48 26 chr13 29859959 29860376 -72012793 - MSTA LTR MaLR 0 428 3 1066 218 44 98 chr13 29860476 29860862 -72012307 + MLT1A1 LTR MaLR 1 365 0 2362 199 12 91 chr13 29860870 29861519 -72011650 + MLT1A1-int LTR MaLR 9 606 -1129 1408 192 7 38 chr13 29861519 29861834 -72011335 + AluJo SINE Alu 1 306 0 2876 179 17 13 chr13 29861937 29862539 -72010630 - L1PBb LINE L1 -5124 1739 1134 3663 92 18 25 chr13 29862539 29863279 -72009890 + MER11A LTR ERVK 1 798 -438 5332 247 22 17 chr13 29863280 29865342 -72007827 - L1PBa LINE L1 -5219 1644 3 3388 181 20 6 chr13 29865356 29866054 -72007115 - L1 LINE L1 -1347 4799 4092 1879 177 105 5 chr13 29866054 29866443 -72006726 + MSTA LTR MaLR 1 428 0 1080 118 18 6 chr13 29866445 29866614 -72006555 + MSTA-int LTR MaLR 3 173 -1407 4109 267 30 16 chr13 29866617 29868181 -72004988 - L1M1 LINE L1 -5278 2287 16 544 274 13 0 chr13 29868206 29868359 -72004810 + L1ME1 LINE L1 3503 3657 -2489 376 202 0 0 chr13 29868424 29868501 -72004668 + MLT1E2 LTR MaLR 86 208 -446 366 232 56 14 chr13 29868501 29868643 -72004526 + L1M4 LINE L1 5033 5180 -966 990 271 81 11 chr13 29868743 29869095 -72004074 + MLT1E2 LTR MaLR 208 622 -4 537 204 92 47 chr13 29869102 29869220 -72003949 + L1ME1 LINE L1 3656 3767 -2379 2184 140 27 30 chr13 29869220 29869585 -72003584 - THE1B LTR MaLR 0 364 1 11360 103 9 0 chr13 29869585 29871151 -72002018 - THE1B-int LTR MaLR 0 1580 1 2243 135 28 25 chr13 29871151 29871514 -72001655 - THE1B LTR MaLR 0 364 1 537 204 92 47 chr13 29871514 29871568 -72001601 + L1ME1 LINE L1 3766 3838 -2308 * 545 254 109 12 chr13 29871561 29871817 -72001352 + L1ME1 LINE L1 4349 4629 -1517 2240 152 5 12 chr13 29871837 29872251 -72000918 - L1MA5 LINE L1 -6 6294 5884 5029 179 23 21 chr13 29872254 29873476 -71999693 + L1M2 LINE L1 4194 5436 -864 2257 140 91 5 chr13 29873476 29873870 -71999299 + MSTA LTR MaLR 1 428 0 5029 179 23 21 chr13 29873870 29874223 -71998946 + L1M2 LINE L1 5436 5787 -513 930 256 0 0 chr13 29874331 29874526 -71998643 - MER58A DNA MER1_type -24 200 6 1332 241 58 0 chr13 29874531 29874930 -71998239 + L1ME1 LINE L1 4759 5180 -966 490 219 22 17 chr13 29874936 29875114 -71998055 + GA-rich Low_complexity Low_complexity 1 179 0 257 103 0 59 chr13 29875248 29875316 -71997853 + (GGGAA)n Simple_repeat Simple_repeat 5 68 0 791 263 75 3 chr13 29875316 29875664 -71997505 + L1ME1 LINE L1 5187 5559 -605 1068 217 15 120 chr13 29875673 29875962 -71997207 - MLT1A1 LTR MaLR -2 363 124 1229 231 102 14 chr13 29875962 29876326 -71996843 + MSTD LTR MaLR 1 396 0 1068 217 15 120 chr13 29876326 29876428 -71996741 - MLT1A1 LTR MaLR -241 124 13 1252 261 71 55 chr13 29876439 29877034 -71996135 + L1ME1 LINE L1 5558 6161 -5 1214 216 60 0 chr13 29877068 29877415 -71995754 + Looper DNA T2_type 1 368 -1190 400 329 85 41 chr13 29877417 29877828 -71995341 + L2 LINE L2 2280 2708 -606 617 100 0 5 chr13 29877835 29878021 -71995148 + AluSq SINE Alu 1 283 -30 596 97 11 0 chr13 29878021 29878114 -71995055 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 266 343 126 8 chr13 29878118 29878426 -71994743 + L2 LINE L2 2716 3066 -206 1213 184 5 167 chr13 29881809 29882439 -71990730 - L1M3 LINE L1 -495 5688 5159 2236 189 11 11 chr13 29882487 29882957 -71990212 + L1MB1 LINE L1 5698 6167 -1 300 91 0 0 chr13 29884481 29884525 -71988644 + (TG)n Simple_repeat Simple_repeat 2 45 0 2347 94 0 0 chr13 29884894 29885193 -71987976 + AluSx SINE Alu 1 299 -13 1157 251 48 20 chr13 29885237 29885595 -71987574 - L1MC4a LINE L1 -6 7802 7435 976 224 33 24 chr13 29885599 29885930 -71987239 + L1MB8 LINE L1 4230 4563 -1583 1291 261 57 20 chr13 29885968 29886374 -71986795 - MLT1D LTR MaLR -84 421 1 1527 207 20 43 chr13 29886374 29886482 -71986687 + L1MB8 LINE L1 4551 4660 -1486 2883 3 0 0 chr13 29886482 29886793 -71986376 + AluYa5 SINE Alu 1 311 0 1527 207 20 43 chr13 29886793 29887075 -71986094 + L1MB8 LINE L1 4660 4932 -1214 2067 225 67 13 chr13 29887081 29887738 -71985431 + L1MB8 LINE L1 5293 6008 -181 446 211 9 0 chr13 29887744 29887853 -71985316 + L1MB8 LINE L1 6068 6177 -1 230 231 43 0 chr13 29889445 29889562 -71983607 + (TA)n Simple_repeat Simple_repeat 2 123 0 546 331 72 31 chr13 29889825 29890184 -71982985 + MLT1J LTR MaLR 28 401 -110 366 260 19 19 chr13 29890284 29890388 -71982781 + MIR SINE MIR 159 262 0 304 315 105 21 chr13 29890667 29890810 -71982359 + MIR SINE MIR 6 160 -102 265 265 33 86 chr13 29890866 29891017 -71982152 + MLT1L LTR MaLR 86 228 -387 205 333 163 0 chr13 29892584 29892731 -71980438 + MIR SINE MIR 48 218 -44 340 321 59 16 chr13 29892794 29892981 -71980188 - MLT1J1 LTR MaLR 0 446 252 268 222 63 0 chr13 29893116 29893179 -71979990 - MLT1J2 LTR MaLR -382 68 2 1970 158 33 25 chr13 29893370 29893731 -71979438 + THE1B LTR MaLR 1 364 0 246 136 0 0 chr13 29893931 29893975 -71979194 + (TC)n Simple_repeat Simple_repeat 1 44 0 323 78 20 0 chr13 29894458 29894509 -71978660 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 226 176 44 54 chr13 29894553 29894658 -71978511 - MLT1J1 LTR MaLR -5 445 343 1355 146 105 70 chr13 29894768 29895156 -71978013 - MER67C LTR ERV1 -246 268 2 2033 156 33 0 chr13 29895349 29895683 -71977486 - L1PA15 LINE L1 0 6165 5821 249 246 31 0 chr13 29895688 29895753 -71977416 - MLT1J2 LTR MaLR -317 133 67 540 321 78 44 chr13 29896024 29896385 -71976784 - LTR67 LTR ERVL -26 531 159 22 0 0 0 chr13 29896509 29896531 -71976638 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr13 29896659 29896697 -71976472 + AT_rich Low_complexity Low_complexity 1 38 0 271 366 10 20 chr13 29897473 29897574 -71975595 - MIR SINE MIR -83 125 26 977 79 0 22 chr13 29898579 29898718 -71974451 + AluY SINE Alu 169 304 -7 349 277 135 0 chr13 29900406 29900554 -71972615 + MER46C DNA MER2_type 1 168 -170 223 331 24 48 chr13 29902460 29902584 -71970585 - MER5A DNA MER1_type -1 188 68 27 0 0 0 chr13 29902836 29902863 -71970306 + AT_rich Low_complexity Low_complexity 1 27 0 237 132 0 0 chr13 29902982 29903020 -71970149 + (T)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr13 29904773 29904795 -71968374 + AT_rich Low_complexity Low_complexity 1 22 0 847 219 81 0 chr13 29904804 29905050 -71968119 - L1MD3 LINE L1 0 7995 7730 1064 262 58 62 chr13 29906289 29906804 -71966365 - LTR40a LTR ERVL -2 517 5 427 245 87 16 chr13 29907218 29907402 -71965767 - L1MC5 LINE L1 -36 7925 7729 21 0 0 0 chr13 29908184 29908205 -71964964 + AT_rich Low_complexity Low_complexity 1 21 0 489 194 11 0 chr13 29908770 29908863 -71964306 + AluJo SINE Alu 127 220 -92 5585 109 57 6 chr13 29908919 29909937 -71963232 + L1PA14 LINE L1 5099 6161 0 2276 95 0 0 chr13 29910130 29910426 -71962743 + AluSq SINE Alu 1 296 -17 218 305 17 0 chr13 29910584 29910643 -71962526 - L2 LINE L2 0 3272 3213 * 226 231 0 0 chr13 29910610 29910649 -71962520 - MIR SINE MIR -21 241 203 4073 191 41 0 chr13 29911207 29911566 -71961603 - L1 LINE L1 -1363 4783 4440 189 0 0 0 chr13 29911566 29911587 -71961582 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 4073 191 41 0 chr13 29911587 29912084 -71961085 - L1 LINE L1 -1706 4440 3892 * 5604 112 24 35 chr13 29912080 29912785 -71960384 + L1PB1 LINE L1 5090 5779 -372 348 24 0 0 chr13 29912785 29912826 -71960343 + (CA)n Simple_repeat Simple_repeat 2 42 0 5604 112 24 35 chr13 29912826 29913194 -71959975 + L1PB1 LINE L1 5779 6150 -1 24 0 0 0 chr13 29913251 29913275 -71959894 + AT_rich Low_complexity Low_complexity 1 24 0 423 287 98 16 chr13 29913458 29913702 -71959467 + L1ME4a LINE L1 2232 2495 -3651 1198 158 0 36 chr13 29913707 29913954 -71959215 + L1MA9 LINE L1 6075 6312 0 648 302 99 23 chr13 29914166 29914722 -71958447 + L1ME4a LINE L1 5402 5999 -122 235 289 13 0 chr13 29914902 29914978 -71958191 + MER52A LTR ERV1 1 77 -1678 3324 197 15 20 chr13 29915212 29915862 -71957307 + MER52A LTR ERV1 1074 1720 -35 386 253 133 24 chr13 29915899 29916065 -71957104 - L2 LINE L2 -129 3184 3001 1767 127 0 4 chr13 29916802 29917069 -71956100 + L1M1 LINE L1 5514 5779 -524 279 341 0 0 chr13 29917310 29917398 -71955771 + L3 LINE CR1 1484 1571 -6 832 258 43 36 chr13 29917880 29918209 -71954960 - HAL1 LINE L1 0 2507 2177 277 286 141 30 chr13 29918378 29918640 -71954529 - HAL1 LINE L1 -2135 372 82 248 281 112 0 chr13 29918945 29919034 -71954135 - MIR SINE MIR 0 262 164 599 278 26 26 chr13 29919470 29919661 -71953508 + MIR SINE MIR 51 241 -21 235 323 47 39 chr13 29919672 29919799 -71953370 - MIR SINE MIR -68 194 67 22 43 0 21 chr13 29919995 29920023 -71953146 + AT_rich Low_complexity Low_complexity 1 29 -17 2401 154 12 44 chr13 29920023 29920504 -71952665 + L1MB1 LINE L1 5702 6167 -1 22 43 0 21 chr13 29920504 29920522 -71952647 + AT_rich Low_complexity Low_complexity 29 46 0 236 345 0 12 chr13 29924686 29924770 -71948399 + L2 LINE L2 3227 3309 -4 210 205 0 0 chr13 29926300 29926339 -71946830 + L2 LINE L2 3221 3259 -13 246 62 0 0 chr13 29926340 29926372 -71946797 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 233 276 24 0 chr13 29927179 29927302 -71945867 + (TA)n Simple_repeat Simple_repeat 2 127 0 257 0 30 0 chr13 29929396 29929429 -71943740 + (TC)n Simple_repeat Simple_repeat 1 34 0 189 0 0 0 chr13 29929428 29929449 -71943720 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 261 319 132 56 chr13 29930483 29930771 -71942398 + L2 LINE L2 2037 2346 -968 24 77 0 0 chr13 29931782 29931834 -71941335 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr13 29932293 29932315 -71940854 + AT_rich Low_complexity Low_complexity 1 22 0 257 316 32 11 chr13 29932461 29932556 -71940613 + MIR3 SINE MIR 112 208 0 184 354 111 0 chr13 29933490 29933589 -71939580 - L2 LINE L2 -822 2492 2383 1572 249 75 36 chr13 29933719 29934241 -71938928 + MLT1F LTR MaLR 1 542 0 1769 166 11 0 chr13 29934260 29934543 -71938626 + AluSx SINE Alu 1 286 -26 446 61 15 0 chr13 29934546 29934612 -71938557 + (CATA)n Simple_repeat Simple_repeat 2 68 0 258 323 169 36 chr13 29934699 29934947 -71938222 - L2 LINE L2 -1182 2132 1852 1585 145 26 36 chr13 29935429 29935732 -71937437 + AluJb SINE Alu 11 310 -2 264 326 70 0 chr13 29935927 29936013 -71937156 - L2 LINE L2 -4 3268 3177 3280 115 10 4 chr13 29936232 29936736 -71936433 - L1PA11 LINE L1 0 6174 5668 25 21 0 43 chr13 29937016 29937038 -71936131 + AT_rich Low_complexity Low_complexity 1 22 -23 8545 39 5 0 chr13 29937038 29938861 -71934308 - L1PA5 LINE L1 0 6154 4325 25 21 0 43 chr13 29938861 29938885 -71934284 + AT_rich Low_complexity Low_complexity 22 45 0 5504 160 15 16 chr13 29940295 29941329 -71931840 - L1MA7 LINE L1 0 6291 5259 28 71 0 0 chr13 29941338 29941394 -71931775 + AT_rich Low_complexity Low_complexity 1 56 0 2041 204 41 7 chr13 29943132 29943543 -71929626 - MSTB LTR MaLR 0 426 2 5248 158 52 9 chr13 29946372 29947526 -71925643 + L1MA7 LINE L1 5089 6291 0 22 35 0 0 chr13 29947526 29947555 -71925614 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 29947688 29947718 -71925451 + AT_rich Low_complexity Low_complexity 1 30 0 304 287 24 37 chr13 29948009 29948173 -71924996 + L1M4 LINE L1 2113 2274 -3872 24 0 0 0 chr13 29949588 29949612 -71923557 + AT_rich Low_complexity Low_complexity 1 24 0 312 331 86 13 chr13 29949705 29950555 -71922614 - L1ME LINE L1 -498 5672 4743 377 263 67 51 chr13 29950767 29951020 -71922149 - L1ME LINE L1 -2214 3932 3671 2555 232 158 105 chr13 29951059 29951253 -71921916 - L1ME LINE L1 -707 5393 5211 189 0 0 0 chr13 29951253 29951274 -71921895 + (TC)n Simple_repeat Simple_repeat 2 22 0 2555 232 158 105 chr13 29951274 29952455 -71920714 - L1ME LINE L1 -889 5211 4094 1212 208 41 4 chr13 29952455 29952700 -71920469 - MLT2B2 LTR ERVL -261 254 1 2555 232 158 105 chr13 29952700 29953958 -71919211 - L1ME LINE L1 -2006 4094 2364 284 294 48 73 chr13 29953982 29954230 -71918939 - L1ME LINE L1 -3951 2310 2069 238 317 134 31 chr13 29954301 29954525 -71918644 - L1ME LINE L1 -5286 696 450 245 349 65 24 chr13 29954982 29955151 -71918018 - L1ME LINE L1 -5636 434 259 23 0 0 0 chr13 29955268 29955291 -71917878 + AT_rich Low_complexity Low_complexity 1 23 0 1716 309 24 17 chr13 29957991 29958149 -71915020 + MLT1H1 LTR MaLR 1 156 -399 3815 107 0 11 chr13 29958149 29958712 -71914457 + L1PA13 LINE L1 5607 6163 0 1716 309 24 17 chr13 29958712 29959096 -71914073 + MLT1H1 LTR MaLR 156 547 -8 324 343 0 57 chr13 29960068 29960208 -71912961 + MIR SINE MIR 20 151 -111 264 329 21 35 chr13 29960837 29960980 -71912189 - MIR SINE MIR 0 262 122 260 256 56 33 chr13 29961471 29961561 -71911608 + MLT1L LTR MaLR 179 270 -345 235 301 0 0 chr13 29961710 29961783 -71911386 + MLT1K LTR MaLR 466 538 -50 907 215 37 23 chr13 29961810 29962024 -71911145 - MER20 DNA MER1_type -1 218 2 574 224 75 0 chr13 29962609 29962743 -71910426 + MER3 DNA MER1_type 7 150 -59 318 224 50 93 chr13 29963122 29963283 -71909886 + MER51A LTR ERV1 438 591 -49 21 71 0 0 chr13 29966381 29966423 -71906746 + AT_rich Low_complexity Low_complexity 1 42 0 712 248 64 5 chr13 29967167 29967369 -71905800 + MIR SINE MIR 31 244 -18 559 184 119 0 chr13 29967899 29968008 -71905161 + FLAM_A SINE Alu 1 122 -11 2526 68 0 0 chr13 29968098 29968405 -71904764 + AluY SINE Alu 1 307 -4 953 184 6 0 chr13 29968408 29968571 -71904598 + AluJb SINE Alu 137 300 -12 980 226 69 85 chr13 29968792 29969168 -71904001 + MLT1A2 LTR MaLR 1 370 -4 944 218 24 10 chr13 29969215 29969421 -71903748 - MER6B DNA MER2_type -1 209 1 24 0 0 0 chr13 29969641 29969665 -71903504 + AT_rich Low_complexity Low_complexity 1 24 0 205 139 23 151 chr13 29969722 29969808 -71903361 + L2 LINE L2 1317 1391 -1923 256 272 43 33 chr13 29969894 29969986 -71903183 - LTR33A LTR ERVL -20 503 411 342 282 100 0 chr13 29970022 29970132 -71903037 - LTR50 LTR ERVL -190 605 485 578 320 53 5 chr13 29970236 29970442 -71902727 - LTR50 LTR ERVL -575 220 5 1450 337 113 31 chr13 29970455 29971655 -71901514 + L2 LINE L2 1610 2907 -407 27 62 0 0 chr13 29971732 29971780 -71901389 + AT_rich Low_complexity Low_complexity 1 48 0 778 189 104 15 chr13 29971994 29972195 -71900974 - MER20 DNA MER1_type 0 219 1 447 266 90 43 chr13 29972272 29972460 -71900709 - L2 LINE L2 0 3313 3117 1599 201 69 6 chr13 29973693 29974056 -71899113 + MLT1B LTR MaLR 2 387 -3 567 310 102 28 chr13 29975637 29976001 -71897168 + MLT1J1 LTR MaLR 15 405 -41 1320 283 103 9 chr13 29976283 29976856 -71896313 - Charlie7 DNA MER1_type -1923 689 63 1605 189 16 22 chr13 29976956 29977269 -71895900 + AluJb SINE Alu 2 312 0 1963 88 38 69 chr13 29978137 29978456 -71894713 + AluSc SINE Alu 1 309 0 226 301 14 14 chr13 29978680 29978753 -71894416 + L2 LINE L2 2605 2677 -637 428 298 0 8 chr13 29978761 29978885 -71894284 + FLAM_C SINE Alu 1 123 -20 924 301 23 4 chr13 29978899 29979257 -71893912 + L2 LINE L2 2695 3057 -256 1548 280 61 45 chr13 29980607 29980778 -71892391 + L2 LINE L2 1519 1686 -1628 2300 226 44 18 chr13 29980778 29981397 -71891772 + LTR27 LTR ERV1 2 636 0 1548 280 61 45 chr13 29981397 29981928 -71891241 + L2 LINE L2 1686 2232 -1082 1032 257 9 0 chr13 29982214 29982432 -71890737 - MER58A DNA MER1_type -3 221 2 330 181 0 42 chr13 29982432 29982502 -71890667 + MLT1I LTR MaLR 341 407 -2 282 268 138 29 chr13 29984330 29984468 -71888701 - MIR SINE MIR -34 228 76 1604 174 19 32 chr13 29984805 29985121 -71888048 - AluJo SINE Alu 0 312 1 21 36 0 0 chr13 29985697 29985725 -71887444 + AT_rich Low_complexity Low_complexity 1 28 0 187 330 62 45 chr13 29985860 29985972 -71887197 - L2 LINE L2 -8 3264 3151 180 269 161 54 chr13 29986558 29986651 -71886518 + MIR SINE MIR 40 142 -66 184 162 54 0 chr13 29988750 29988787 -71884382 + L3b LINE CR1 1303 1341 -242 1602 189 113 6 chr13 29989147 29989502 -71883667 - MSTD LTR MaLR 0 396 4 2001 122 20 7 chr13 29989778 29990072 -71883097 - AluSx SINE Alu -14 298 1 288 0 0 0 chr13 29991513 29991545 -71881624 + (T)n Simple_repeat Simple_repeat 1 32 0 258 311 58 19 chr13 29992278 29992381 -71880788 - MIR SINE MIR -142 120 14 1177 77 6 12 chr13 29992691 29992859 -71880310 + L1PA10 LINE L1 6002 6168 0 2136 113 20 0 chr13 29992990 29993291 -71879878 - AluSp SINE Alu -6 307 1 21 0 0 0 chr13 29994830 29994851 -71878318 + AT_rich Low_complexity Low_complexity 1 21 0 579 243 58 86 chr13 29995262 29995505 -71877664 + MER8 DNA MER2_type 3 238 -1 1661 251 108 37 chr13 29995549 29996122 -71877047 + MLT1E3 LTR MaLR 8 621 -3 283 291 97 49 chr13 29996153 29996400 -71876769 + MLT1L LTR MaLR 353 611 -4 253 284 90 62 chr13 29996600 29997035 -71876134 + L1ME2 LINE L1 1290 1736 -4834 1558 252 103 26 chr13 29997140 29997857 -71875312 - L1 LINE L1 -2840 3306 2535 243 61 0 0 chr13 29997867 29997900 -71875269 + (TATTG)n Simple_repeat Simple_repeat 3 35 0 4348 214 24 27 chr13 29998006 29999334 -71873835 + L1MA9 LINE L1 3289 4619 -1693 195 42 0 0 chr13 29999334 29999358 -71873811 + (TG)n Simple_repeat Simple_repeat 2 25 0 4348 214 24 27 chr13 29999358 29999853 -71873316 + L1MA9 LINE L1 4619 6270 -42 1456 250 73 30 chr13 29999853 30000426 -71872743 + L1MB8 LINE L1 5568 6165 -13 493 280 32 11 chr13 30000429 30000618 -71872551 + L1ME2 LINE L1 2052 2244 -4581 394 249 88 10 chr13 30000810 30001071 -71872098 + L1ME2 LINE L1 2482 2721 -3925 920 133 53 7 chr13 30001103 30001254 -71871915 - Tigger2 DNA MER2_type -288 2430 2273 264 200 62 0 chr13 30001244 30001309 -71871860 - Tigger2 DNA MER2_type -2649 69 1 * 942 270 50 38 chr13 30001372 30001768 -71871401 + L1ME2 LINE L1 2813 3213 -3431 858 252 71 53 chr13 30001794 30002157 -71871012 - MLT1A2 LTR MaLR 0 374 1 514 279 42 5 chr13 30002157 30002372 -71870797 + L1ME2 LINE L1 3233 3455 -3189 243 228 0 18 chr13 30002832 30002889 -71870280 + (TA)n Simple_repeat Simple_repeat 1 56 0 1485 272 153 22 chr13 30002895 30003704 -71869465 + L1ME2 LINE L1 5742 6657 -5 382 143 0 0 chr13 30006563 30006619 -71866550 + L1PA8A LINE L1 6069 6124 -7 1208 157 14 5 chr13 30006694 30006904 -71866265 + AluSg/x SINE Alu 77 288 -24 2035 246 47 27 chr13 30006915 30007552 -71865617 - L1ME1 LINE L1 -23 6212 5563 316 249 56 67 chr13 30007633 30007902 -71865267 - L1ME1 LINE L1 -2751 3464 3199 * 387 236 187 0 chr13 30007891 30008104 -71865065 - L1ME1 LINE L1 -3735 2480 2230 483 232 76 27 chr13 30008108 30008293 -71864876 - L1ME1 LINE L1 -4203 2193 2000 334 200 40 60 chr13 30008819 30008919 -71864250 - MIR SINE MIR -7 255 158 1892 125 3 7 chr13 30010161 30010448 -71862721 + AluSx SINE Alu 1 286 -26 22 35 0 0 chr13 30010589 30010618 -71862551 + AT_rich Low_complexity Low_complexity 1 29 0 765 236 91 5 chr13 30011835 30012034 -71861135 + MER20 DNA MER1_type 3 218 -1 268 350 106 50 chr13 30012407 30012830 -71860339 - L2 LINE L2 -657 2657 2211 24 0 0 0 chr13 30013109 30013133 -71860036 + AT_rich Low_complexity Low_complexity 1 24 0 257 271 93 25 chr13 30015587 30015705 -71857464 - MER94 DNA DNA -1 133 8 348 24 0 0 chr13 30016399 30016440 -71856729 + (TGG)n Simple_repeat Simple_repeat 3 43 0 314 328 30 0 chr13 30019743 30019874 -71853295 + L2 LINE L2 2517 2651 -663 202 318 202 43 chr13 30019959 30020217 -71852952 + L2 LINE L2 1731 2029 -1285 451 278 69 6 chr13 30020260 30020433 -71852736 - LTR33 LTR ERVL -5 516 333 375 331 0 0 chr13 30020616 30020737 -71852432 - LTR33 LTR ERVL -400 121 1 226 341 123 31 chr13 30020738 30021087 -71852082 + L2 LINE L2 2103 2483 -831 232 360 70 25 chr13 30021230 30021430 -71851739 - L2 LINE L2 -190 3082 2874 188 323 71 30 chr13 30022027 30022126 -71851043 + MIR3 SINE MIR 91 193 -15 2260 98 0 0 chr13 30023140 30023436 -71849733 + AluSg SINE Alu 1 296 -14 21 57 0 0 chr13 30024516 30024551 -71848618 + AT_rich Low_complexity Low_complexity 1 35 0 201 211 0 0 chr13 30024779 30024831 -71848338 + (TA)n Simple_repeat Simple_repeat 1 52 0 206 247 14 55 chr13 30026094 30026167 -71847002 + MIR SINE MIR 167 236 -26 200 348 71 9 chr13 30030375 30030487 -71842682 + MIR SINE MIR 2 120 -142 447 190 35 60 chr13 30031197 30031313 -71841856 - L2 LINE L2 -5 3308 3196 296 285 45 84 chr13 30033360 30033539 -71839630 + L2 LINE L2 2597 2768 -546 2089 119 32 40 chr13 30033664 30034042 -71839127 + THE1C LTR MaLR 1 375 0 548 313 88 9 chr13 30034895 30035122 -71838047 + MIR SINE MIR 2 246 -16 2239 94 3 7 chr13 30036790 30037088 -71836081 - AluSx SINE Alu -2 310 14 675 279 89 49 chr13 30037130 30037688 -71835481 + MLT1G1 LTR MaLR 1 549 0 22 35 0 0 chr13 30037825 30037854 -71835315 + AT_rich Low_complexity Low_complexity 1 29 0 558 274 97 21 chr13 30039280 30039466 -71833703 + MIR SINE MIR 61 260 -2 423 277 45 68 chr13 30039567 30039617 -71833552 - MIR SINE MIR -46 216 166 2399 125 5 14 chr13 30039617 30039984 -71833185 + THE1B LTR MaLR 1 364 0 423 277 45 68 chr13 30039984 30040153 -71833016 - MIR SINE MIR -96 166 2 216 298 85 78 chr13 30041538 30041796 -71831373 + L2 LINE L2 2397 2656 -658 399 309 113 40 chr13 30041914 30042049 -71831120 + L2 LINE L2 2933 3057 -256 1818 168 45 6 chr13 30042049 30042383 -71830786 - MER7A DNA MER2_type -1 345 1 399 309 113 40 chr13 30042383 30042600 -71830569 + L2 LINE L2 3057 3311 -2 304 259 197 20 chr13 30043335 30043482 -71829687 + MIR SINE MIR 58 230 -32 311 265 77 17 chr13 30043499 30043616 -71829553 + MIR3 SINE MIR 54 177 -31 231 353 43 9 chr13 30045412 30045528 -71827641 + 5S rRNA rRNA 1 120 -1 348 301 151 24 chr13 30045547 30045713 -71827456 + MIR SINE MIR 12 198 -64 3944 181 49 24 chr13 30045714 30046614 -71826555 + L1MA9 LINE L1 5391 6312 0 231 99 49 25 chr13 30046618 30046699 -71826470 + (TA)n Simple_repeat Simple_repeat 1 83 0 294 214 214 10 chr13 30046837 30046935 -71826234 - L2 LINE L2 -4 3309 3192 21 57 0 0 chr13 30047770 30047805 -71825364 + AT_rich Low_complexity Low_complexity 1 35 0 493 114 53 92 chr13 30049533 30049664 -71823505 + L1MA4 LINE L1 6174 6299 -1 968 228 105 46 chr13 30049747 30050071 -71823098 - MER2 DNA MER2_type -2 343 1 361 343 123 9 chr13 30050093 30050312 -71822857 + L3 LINE CR1 1288 1531 -46 2302 96 0 34 chr13 30050383 30050706 -71822463 - AluSx SINE Alu 0 312 1 2585 124 41 2 chr13 30051425 30051837 -71821332 + MSTA LTR MaLR 1 428 0 246 62 0 0 chr13 30055170 30055202 -71817967 + (CA)n Simple_repeat Simple_repeat 2 33 0 1344 154 9 0 chr13 30056193 30056407 -71816762 - L1PB4 LINE L1 -1 6155 5940 214 337 66 22 chr13 30056709 30056890 -71816279 + L2 LINE L2 2450 2638 -676 202 364 173 0 chr13 30057348 30057458 -71815711 + L2 LINE L2 3141 3269 -3 266 324 14 0 chr13 30057487 30057561 -71815608 - MIR SINE MIR -115 93 19 2388 150 104 17 chr13 30108038 30108164 -71765005 + MER6 DNA MER2_type 330 444 -421 2116 138 33 25 chr13 30108164 30108525 -71764644 + THE1B LTR MaLR 1 364 0 2388 150 104 17 chr13 30108525 30108879 -71764290 + MER6 DNA MER2_type 444 852 -13 928 245 0 11 chr13 30111117 30111305 -71761864 + MER5A DNA MER1_type 1 186 -3 454 322 33 16 chr13 30111640 30111823 -71761346 + MIR SINE MIR 16 201 -61 765 209 28 0 chr13 30111827 30112009 -71761160 - MER53 DNA DNA 0 189 3 26 0 0 0 chr13 30112080 30112106 -71761063 + AT_rich Low_complexity Low_complexity 1 26 0 697 253 25 8 chr13 30113814 30114122 -71759047 - L1M4c LINE L1 -3814 2918 2608 1728 168 3 13 chr13 30114251 30114549 -71758620 + AluSx SINE Alu 1 295 -17 363 246 56 28 chr13 30114899 30115078 -71758091 - L1M4c LINE L1 -4116 2618 2435 1332 128 55 206 chr13 30115144 30115647 -71757522 + Tigger2a DNA MER2_type 1 409 -25 3453 256 54 39 chr13 30115776 30117177 -71755992 - L1M4c LINE L1 -4516 2137 1167 254 284 74 0 chr13 30117298 30117379 -71755790 + MIR SINE MIR 62 148 -114 965 161 0 7 chr13 30117783 30117938 -71755231 - AluSg SINE Alu -154 156 3 249 324 98 0 chr13 30118540 30118642 -71754527 + MIR SINE MIR 151 262 0 180 0 0 0 chr13 30121412 30121432 -71751737 + (CAA)n Simple_repeat Simple_repeat 2 21 0 635 261 6 19 chr13 30121432 30121578 -71751591 - FRAM SINE Alu -156 146 1 24 0 0 0 chr13 30122120 30122144 -71751025 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 30123109 30123133 -71750036 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr13 30123444 30123486 -71749683 + AT_rich Low_complexity Low_complexity 1 42 0 1309 203 185 10 chr13 30124573 30124962 -71748207 - MSTB2 LTR MaLR 0 457 1 27 49 0 0 chr13 30126217 30126258 -71746911 + AT_rich Low_complexity Low_complexity 1 41 0 214 306 12 24 chr13 30126518 30126603 -71746566 + MIR3 SINE MIR 82 165 -43 248 253 13 0 chr13 30126636 30126715 -71746454 + (TA)n Simple_repeat Simple_repeat 2 81 0 695 264 62 0 chr13 30126902 30127080 -71746089 - MER5A DNA MER1_type 0 189 1 394 236 173 17 chr13 30127088 30127252 -71745917 - MER5A DNA MER1_type -1 177 1 1139 134 50 34 chr13 30127304 30127543 -71745626 + L1MA9 LINE L1 6070 6312 0 233 241 149 0 chr13 30130745 30130832 -71742337 - MIR SINE MIR -73 189 90 291 282 68 19 chr13 30132138 30132241 -71740928 + MIR SINE MIR 76 183 -79 226 244 96 67 chr13 30132450 30132585 -71740584 + L1ME4a LINE L1 5977 6115 -6 278 273 81 20 chr13 30132698 30132797 -71740372 - L2 LINE L2 0 3313 3209 182 168 122 84 chr13 30132837 30132944 -71740225 - MER5C DNA MER1_type -204 120 10 1150 250 151 33 chr13 30134354 30134923 -71738246 - L1ME3A LINE L1 -9 6397 5762 589 152 51 14 chr13 30134923 30135061 -71738108 - LTR37A LTR ERV1 -2 424 282 319 189 147 32 chr13 30135158 30135253 -71737916 - LTR37A LTR ERV1 -320 106 1 480 257 101 27 chr13 30135253 30135510 -71737659 - L1ME3A LINE L1 -641 5765 5490 350 322 42 72 chr13 30135645 30135977 -71737192 - L1ME3A LINE L1 -4781 1603 1282 542 253 96 9 chr13 30135981 30136210 -71736959 - L1ME3A LINE L1 -4975 1397 1149 2143 193 29 2 chr13 30136298 30136749 -71736420 - L1MB2 LINE L1 -1 6234 5772 1140 178 62 36 chr13 30136753 30137029 -71736140 + THE1C LTR MaLR 1 283 -92 623 241 54 25 chr13 30137899 30138102 -71735067 + MIR SINE MIR 44 252 -10 268 335 43 43 chr13 30138789 30138974 -71734195 - MIR3 SINE MIR -11 197 13 195 311 0 0 chr13 30139176 30139221 -71733948 - MIR SINE MIR -135 73 29 274 288 77 17 chr13 30139294 30139424 -71733745 - MLT1J1 LTR MaLR -37 413 278 397 320 87 12 chr13 30139448 30139620 -71733549 - MLT1J2 LTR MaLR -245 205 21 2112 107 7 13 chr13 30139836 30140145 -71733024 + AluSx SINE Alu 1 307 -5 26 0 0 0 chr13 30140354 30140380 -71732789 + AT_rich Low_complexity Low_complexity 1 26 0 1495 178 44 24 chr13 30140571 30140864 -71732305 + AluJb SINE Alu 1 299 -13 1699 223 27 5 chr13 30141291 30141704 -71731465 - L1MB2 LINE L1 -870 5340 4919 1481 163 72 39 chr13 30141714 30142077 -71731092 - THE1C LTR MaLR 0 375 1 9753 129 7 39 chr13 30142079 30143701 -71729468 - THE1C-int LTR MaLR -7 1573 3 1695 153 72 28 chr13 30143703 30144062 -71729107 - THE1C LTR MaLR 0 375 1 2129 183 52 35 chr13 30144079 30144563 -71728606 - L1MB2 LINE L1 -1311 4899 4403 13630 153 19 10 chr13 30144563 30146960 -71726209 - Tigger1 DNA MER2_type 0 2418 1 2129 183 52 35 chr13 30146960 30147212 -71725957 - L1MB2 LINE L1 -1807 4403 4157 387 109 0 0 chr13 30147212 30147276 -71725893 + MER73 LTR ERVL 1 64 -580 475 236 2 46 chr13 30147277 30147460 -71725709 - L1MB2 LINE L1 -5053 1078 907 393 333 42 66 chr13 30147864 30148243 -71724926 - L1MB2 LINE L1 -5497 634 265 377 348 63 52 chr13 30148346 30148728 -71724441 - L1MEd LINE L1 -5355 764 379 2257 170 26 19 chr13 30148763 30148784 -71724385 - MSTB LTR MaLR -5 421 402 2198 143 80 5 chr13 30148784 30149182 -71723987 + MSTA LTR MaLR 1 428 0 2257 170 26 19 chr13 30149182 30149578 -71723591 - MSTB LTR MaLR -24 402 1 341 339 47 47 chr13 30150185 30150507 -71722662 - L1MEd LINE L1 -5732 387 66 1521 266 97 58 chr13 30150817 30151521 -71721648 - MER21B LTR ERV1 -129 734 4 21 0 0 0 chr13 30151615 30151636 -71721533 + AT_rich Low_complexity Low_complexity 1 21 0 266 352 89 45 chr13 30153459 30153930 -71719239 + L2 LINE L2 2599 3085 -187 1344 265 35 53 chr13 30154034 30154303 -71718866 - LTR16A LTR ERVL -13 437 177 2348 139 42 40 chr13 30154303 30154728 -71718441 + MSTB LTR MaLR 1 426 0 1344 265 35 53 chr13 30154728 30154888 -71718281 - LTR16A LTR ERVL -273 177 16 181 382 45 27 chr13 30154903 30155013 -71718156 + L2 LINE L2 3202 3313 0 187 292 0 0 chr13 30156700 30156748 -71716421 - MER5B DNA MER1_type -81 97 50 1398 181 73 16 chr13 30157603 30157918 -71715251 + L1MA3 LINE L1 5970 6302 -3 295 301 0 12 chr13 30158410 30158493 -71714676 + MIR3 SINE MIR 114 195 -13 489 239 93 58 chr13 30159004 30159309 -71713860 + LTR37A LTR ERV1 8 289 -137 306 0 0 0 chr13 30159309 30159343 -71713826 + (CA)n Simple_repeat Simple_repeat 2 35 0 489 239 93 58 chr13 30159343 30159487 -71713682 + LTR37A LTR ERV1 289 426 0 205 308 89 48 chr13 30159487 30159633 -71713536 - L2 LINE L2 -4 3309 3158 183 129 0 0 chr13 30160734 30160765 -71712404 + (TAGG)n Simple_repeat Simple_repeat 1 31 0 964 290 41 52 chr13 30160765 30161248 -71711921 - MLT2B1 LTR ERVL -42 478 1 7741 197 45 40 chr13 30161318 30162120 -71711049 + L1M4 LINE L1 6 803 -5525 2197 91 14 0 chr13 30162120 30162405 -71710764 - AluSx SINE Alu -23 289 1 7741 197 45 40 chr13 30162405 30165607 -71707562 + L1M4 LINE L1 803 4075 -2253 407 21 0 0 chr13 30165607 30165655 -71707514 + tRNA-Gln-CAG tRNA tRNA 1 48 -27 7741 197 45 40 chr13 30165655 30165814 -71707355 + L1M4 LINE L1 4075 4232 -2096 477 209 111 45 chr13 30165916 30166093 -71707076 + L1M4 LINE L1 5403 5587 -743 26 0 0 0 chr13 30166127 30166153 -71707016 + AT_rich Low_complexity Low_complexity 1 26 0 328 272 12 41 chr13 30166183 30166352 -71706817 - L1MDa LINE L1 -5079 1533 1300 22 56 0 0 chr13 30168709 30168745 -71704424 + AT_rich Low_complexity Low_complexity 1 36 0 377 340 19 12 chr13 30170267 30170429 -71702740 - MIR3 SINE MIR -1 207 45 1814 269 81 30 chr13 30171201 30171911 -71701258 - L1ME3A LINE L1 -26 6144 5344 2439 74 0 0 chr13 30171911 30172209 -71700960 + AluSc SINE Alu 1 298 -11 1814 269 81 30 chr13 30172209 30172717 -71700452 - L1ME3A LINE L1 -826 5344 4864 223 288 0 25 chr13 30173765 30173845 -71699324 + (TATTG)n Simple_repeat Simple_repeat 3 80 0 333 225 65 35 chr13 30174685 30174855 -71698314 + L1MC4 LINE L1 7600 7884 -158 254 316 0 0 chr13 30174883 30174962 -71698207 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 248 250 103 9 chr13 30174973 30175089 -71698080 + L1MC4 LINE L1 7916 8042 0 24 32 0 0 chr13 30175169 30175200 -71697969 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr13 30175733 30175783 -71697386 + AT_rich Low_complexity Low_complexity 1 50 0 10946 180 34 16 chr13 30176292 30178529 -71694640 + L1P LINE L1 1744 4020 -2126 5081 152 1 57 chr13 30178528 30179453 -71693716 - THE1C-int LTR MaLR -705 875 3 * 1587 173 58 28 chr13 30179455 30179819 -71693350 - THE1C LTR MaLR 0 375 1 2040 114 0 0 chr13 30179884 30180157 -71693012 + AluSg SINE Alu 1 273 -37 184 77 51 0 chr13 30180161 30180200 -71692969 + (TATAA)n Simple_repeat Simple_repeat 4 44 0 23 33 0 0 chr13 30181852 30181882 -71691287 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 30181993 30182015 -71691154 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr13 30182219 30182263 -71690906 + AT_rich Low_complexity Low_complexity 1 44 0 248 302 35 9 chr13 30182375 30182491 -71690678 - L1MC/D LINE L1 -2284 5524 5406 23 0 0 0 chr13 30182520 30182543 -71690626 + AT_rich Low_complexity Low_complexity 1 23 0 2123 82 39 0 chr13 30182544 30182824 -71690345 - AluY SINE Alu -20 291 1 399 276 70 27 chr13 30182828 30183013 -71690156 - L1MC/D LINE L1 -762 5384 5192 366 314 151 6 chr13 30183124 30183449 -71689720 - L1ME3A LINE L1 -1282 4864 4493 435 281 168 27 chr13 30183469 30183687 -71689482 - L1ME3A LINE L1 -1617 4529 4343 2204 100 17 3 chr13 30183687 30183986 -71689183 - AluSg SINE Alu -7 303 1 435 281 168 27 chr13 30183986 30184173 -71688996 - L1ME3A LINE L1 -1803 4343 4067 407 312 93 34 chr13 30184216 30184453 -71688716 - MIR SINE MIR -11 251 1 466 310 76 35 chr13 30184543 30185146 -71688023 - L1ME3A LINE L1 -2155 3991 3364 304 289 21 37 chr13 30185410 30185461 -71687708 - L1ME3A LINE L1 -3111 3035 2985 732 92 25 0 chr13 30185461 30185580 -71687589 - L1MA5 LINE L1 -1 6299 6178 304 289 21 37 chr13 30185580 30185715 -71687454 - L1ME3A LINE L1 -3161 2985 2852 6626 133 52 27 chr13 30185831 30187031 -71686138 + Tigger3b DNA MER2_type 1 1231 0 202 372 139 0 chr13 30187431 30187517 -71685652 + L2 LINE L2 3156 3253 -19 398 125 50 12 chr13 30187753 30187913 -71685256 + (TA)n Simple_repeat Simple_repeat 1 166 0 1788 123 3 0 chr13 30188001 30188285 -71684884 - L1MA4 LINE L1 -1 6299 6015 29 28 0 0 chr13 30189101 30189137 -71684032 + AT_rich Low_complexity Low_complexity 1 36 0 703 335 58 4 chr13 30189802 30190044 -71683125 + MIR SINE MIR 4 258 -4 1293 249 94 5 chr13 30190311 30190692 -71682477 - LTR52 LTR ERVL -1 420 6 24 32 0 0 chr13 30191514 30191545 -71681624 + AT_rich Low_complexity Low_complexity 1 31 0 2016 131 0 3 chr13 30191949 30192255 -71680914 + AluY SINE Alu 1 305 -6 246 288 0 0 chr13 30192566 30192639 -71680530 + L1ME LINE L1 5588 5660 -461 538 158 16 31 chr13 30192678 30192805 -71680364 + AluJb SINE Alu 1 125 -187 318 217 14 0 chr13 30192831 30192900 -71680269 + L1ME1 LINE L1 3775 3844 -2302 2330 258 33 37 chr13 30192922 30194178 -71678991 + L1ME1 LINE L1 4875 6119 -47 24 0 0 0 chr13 30194182 30194206 -71678963 + AT_rich Low_complexity Low_complexity 1 24 0 596 359 103 34 chr13 30194311 30195203 -71677966 - L2 LINE L2 0 3272 2282 401 290 80 45 chr13 30195272 30195472 -71677697 - MIR SINE MIR -2 260 54 322 242 9 52 chr13 30195887 30196002 -71677167 + MIR SINE MIR 57 166 -83 198 0 0 0 chr13 30196084 30196106 -71677063 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 602 328 62 4 chr13 30196436 30196677 -71676492 + MIR SINE MIR 8 262 0 473 169 12 0 chr13 30196749 30196832 -71676337 - AluJ/FLAM SINE Alu -228 84 1 1362 208 88 48 chr13 30200006 30200451 -71672718 - LTR56 LTR ERV1 0 440 4 825 177 151 10 chr13 30201241 30201433 -71671736 - MER20 DNA MER1_type 0 219 1 201 296 200 9 chr13 30201757 30201872 -71671297 - MIR SINE MIR -44 218 82 23 0 0 0 chr13 30202094 30202117 -71671052 + AT_rich Low_complexity Low_complexity 1 23 0 540 281 157 0 chr13 30202448 30202633 -71670536 + MIR SINE MIR 49 262 0 23 54 0 0 chr13 30202855 30202892 -71670277 + AT_rich Low_complexity Low_complexity 1 37 0 1365 282 69 22 chr13 30203225 30203754 -71669415 - MLT1F1 LTR MaLR -12 555 1 1417 148 21 4 chr13 30205141 30205378 -71667791 + MLT2C1 LTR ERVL 1 241 -156 246 136 0 0 chr13 30205379 30205423 -71667746 + (CA)n Simple_repeat Simple_repeat 1 44 0 353 378 46 0 chr13 30205537 30205754 -71667415 - L2 LINE L2 -792 2522 2296 22 0 0 0 chr13 30208949 30208971 -71664198 + AT_rich Low_complexity Low_complexity 1 22 0 1086 266 95 38 chr13 30209017 30209544 -71663625 + MER34B LTR ERV1 9 565 0 1554 242 117 26 chr13 30210336 30210848 -71662321 + MLT1F1 LTR MaLR 1 567 0 1497 165 24 31 chr13 30210866 30211157 -71662012 + AluJb SINE Alu 4 292 -20 186 71 0 0 chr13 30211631 30211659 -71661510 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1331 195 8 22 chr13 30211671 30211938 -71661231 - AluJo SINE Alu 0 312 50 5717 103 26 20 chr13 30212333 30212409 -71660760 + L1PA13 LINE L1 5254 5328 -835 2389 88 0 0 chr13 30212409 30212703 -71660466 + AluSc SINE Alu 1 294 -15 5717 103 26 20 chr13 30212703 30213530 -71659639 + L1PA13 LINE L1 5328 6163 0 27 29 0 0 chr13 30215626 30215660 -71657509 + AT_rich Low_complexity Low_complexity 1 34 0 435 217 0 47 chr13 30216409 30216515 -71656654 - Charlie7 DNA MER1_type -330 2282 2182 480 235 102 32 chr13 30216541 30216699 -71656470 + MIR SINE MIR 29 203 -59 2389 77 0 0 chr13 30216699 30216996 -71656173 + AluY SINE Alu 6 302 -9 480 235 102 32 chr13 30216996 30217024 -71656145 + MIR SINE MIR 203 228 -34 1212 271 139 12 chr13 30217152 30217513 -71655656 - Charlie7 DNA MER1_type -1235 1377 1063 1460 179 120 7 chr13 30217513 30217821 -71655348 + MER2 DNA MER2_type 2 344 0 1212 271 139 12 chr13 30217821 30218035 -71655134 - Charlie7 DNA MER1_type -1549 1063 729 860 282 75 34 chr13 30218081 30218559 -71654610 - Charlie7 DNA MER1_type -2060 552 55 191 247 156 26 chr13 30220291 30220368 -71652801 + MIR SINE MIR 176 262 0 7630 57 4 0 chr13 30220899 30222653 -71650516 - L1PA5 LINE L1 -1 6153 4396 6450 29 1 0 chr13 30222653 30223421 -71649748 + L1PA5 LINE L1 3630 4398 -1748 463 217 57 19 chr13 30223607 30223641 -71649528 - L1MA10 LINE L1 0 6334 6301 3488 243 66 35 chr13 30223641 30225881 -71647288 - L1ME1 LINE L1 -31 6135 3821 963 247 97 22 chr13 30225897 30226486 -71646683 + L1ME LINE L1 4821 5449 -713 479 260 75 58 chr13 30226488 30226780 -71646389 + L1M4 LINE L1 4563 4859 -1287 357 268 152 49 chr13 30226804 30226968 -71646201 + MER5A DNA MER1_type 9 189 0 1791 181 7 0 chr13 30227922 30228221 -71644948 + AluJb SINE Alu 1 301 -11 1440 138 149 68 chr13 30228280 30228649 -71644520 - MER57A LTR ERV1 0 403 5 189 0 0 0 chr13 30229331 30229352 -71643817 + (T)n Simple_repeat Simple_repeat 1 21 0 1932 256 50 8 chr13 30229813 30230309 -71642860 + LTR40a LTR ERVL 1 517 -2 2441 76 0 0 chr13 30230480 30230782 -71642387 - AluY SINE Alu -9 302 1 201 310 103 17 chr13 30231680 30231796 -71641373 - MIR SINE MIR -108 154 29 * 263 250 60 50 chr13 30231794 30231894 -71641275 + MIR SINE MIR 162 262 0 199 275 145 58 chr13 30231966 30232104 -71641065 - L2 LINE L2 0 3313 3164 248 256 184 16 chr13 30234398 30234523 -71638646 - MIR SINE MIR -18 244 99 355 313 60 0 chr13 30235508 30235674 -71637495 + MIR SINE MIR 67 242 -20 304 249 31 204 chr13 30235650 30235939 -71637230 - MIR SINE MIR -21 241 3 * 312 301 41 16 chr13 30235962 30236085 -71637084 + MER94 DNA DNA 9 134 0 1930 231 108 17 chr13 30237079 30237599 -71635570 - MLT1F1 LTR MaLR 0 567 1 1301 200 31 78 chr13 30237703 30238088 -71635081 - MLT2D LTR ERVL -47 367 1 1194 203 94 26 chr13 30238125 30238391 -71634778 + AluJb SINE Alu 1 284 -18 205 267 17 0 chr13 30239904 30239964 -71633205 + (TGAA)n Simple_repeat Simple_repeat 3 63 0 1555 204 0 0 chr13 30240312 30240596 -71632573 - AluJo SINE Alu -16 296 13 228 362 101 7 chr13 30241357 30241506 -71631663 + MIR SINE MIR 35 197 -65 266 284 54 0 chr13 30241527 30241601 -71631568 - MIR SINE MIR -1 261 184 185 281 47 31 chr13 30241607 30241671 -71631498 + MIR SINE MIR 194 258 -4 7686 25 0 7 chr13 30242013 30243315 -71629854 - L1PA3 LINE L1 -3 6152 4854 19317 27 2 1 chr13 30243315 30245643 -71627526 + L1PA3 LINE L1 2527 4857 -1289 380 250 109 26 chr13 30245736 30245892 -71627277 + MIR SINE MIR 86 254 -8 21 36 0 0 chr13 30246076 30246104 -71627065 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 30246965 30246988 -71626181 + AT_rich Low_complexity Low_complexity 1 23 0 181 122 98 24 chr13 30247238 30247279 -71625890 - MIR SINE MIR -13 249 206 342 0 0 0 chr13 30247526 30247564 -71625605 + (CA)n Simple_repeat Simple_repeat 1 38 0 284 370 25 8 chr13 30247565 30247684 -71625485 + MIR SINE MIR 32 152 -110 5256 89 61 6 chr13 30248207 30248990 -71624179 - LTR12 LTR ERV1 0 826 1 193 261 20 181 chr13 30249478 30249677 -71623492 + MER5B DNA MER1_type 1 167 -11 481 324 51 57 chr13 30249697 30249784 -71623385 - MER102a DNA MER1_type -1123 294 208 2502 50 0 0 chr13 30249784 30250082 -71623087 + AluY SINE Alu 1 298 -13 481 324 51 57 chr13 30250082 30250290 -71622879 - MER102a DNA MER1_type -1209 208 1 197 197 16 0 chr13 30250722 30250783 -71622386 + CT-rich Low_complexity Low_complexity 1 62 0 403 309 106 57 chr13 30252107 30252389 -71620780 - L1MEd LINE L1 -5369 750 455 324 276 70 124 chr13 30252426 30252813 -71620356 - L1MEd LINE L1 -5751 368 3 1126 21 0 0 chr13 30252926 30253069 -71620100 - L1P2 LINE L1 -724 5431 5289 1923 153 0 25 chr13 30253141 30253461 -71619708 + AluSx SINE Alu 1 312 0 22 0 0 0 chr13 30254319 30254341 -71618828 + AT_rich Low_complexity Low_complexity 1 22 0 201 328 22 89 chr13 30254421 30254601 -71618568 - MIR3 SINE MIR -21 187 20 281 270 35 26 chr13 30254947 30254995 -71618174 - L1ME LINE L1 -301 5863 5817 3760 63 2 8 chr13 30254995 30255499 -71617670 - L1PA8 LINE L1 -1 6171 5671 281 270 35 26 chr13 30255499 30255565 -71617604 - L1ME LINE L1 -347 5817 5748 210 248 98 68 chr13 30256442 30256575 -71616594 + MIR SINE MIR 82 218 -44 282 143 0 0 chr13 30256983 30257032 -71616137 + (CA)n Simple_repeat Simple_repeat 2 50 0 210 239 0 0 chr13 30257794 30257865 -71615304 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 6008 139 14 1 chr13 30258025 30259212 -71613957 + L1PB1 LINE L1 4949 6150 -1 1109 255 164 34 chr13 30259367 30259886 -71613283 + L1ME3A LINE L1 5016 5466 -704 2340 96 0 10 chr13 30259886 30260198 -71612971 - AluSc SINE Alu 0 309 1 1109 255 164 34 chr13 30260198 30260688 -71612481 + L1ME3A LINE L1 5466 6161 -9 234 238 60 48 chr13 30260864 30260948 -71612221 - MIR SINE MIR -12 250 166 438 298 101 55 chr13 30260963 30261289 -71611880 + MLT1L LTR MaLR 47 387 -228 281 302 48 24 chr13 30261296 30261422 -71611747 - MIR SINE MIR -71 191 63 2483 118 3 8 chr13 30261655 30262021 -71611148 + THE1B LTR MaLR 1 364 0 735 222 98 10 chr13 30263123 30263326 -71609843 + MER58A DNA MER1_type 3 223 -1 615 240 49 101 chr13 30266186 30266453 -71606716 - L3b LINE CR1 -141 1442 1190 376 196 216 0 chr13 30266985 30267087 -71606082 + MIR SINE MIR 73 196 -66 246 62 0 0 chr13 30267712 30267744 -71605425 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr13 30268609 30268638 -71604531 + (TA)n Simple_repeat Simple_repeat 1 29 0 300 158 0 0 chr13 30276302 30276359 -71596810 + (CA)n Simple_repeat Simple_repeat 2 58 0 22 0 0 0 chr13 30276386 30276408 -71596761 + AT_rich Low_complexity Low_complexity 1 22 0 211 259 0 19 chr13 30276487 30276541 -71596628 - L3 LINE CR1 -288 1289 1237 269 151 19 19 chr13 30276984 30277037 -71596132 + MLT1J1 LTR MaLR 71 123 -323 4473 248 103 73 chr13 30277158 30278349 -71594820 + L1ME1 LINE L1 2511 3665 -2481 1555 162 92 94 chr13 30278349 30278805 -71594364 - MSTB2 LTR MaLR 0 457 3 4473 248 103 73 chr13 30278805 30278970 -71594199 + L1ME1 LINE L1 3665 3824 -2322 1487 61 0 5 chr13 30278970 30279167 -71594002 + L1PA4 LINE L1 5957 6152 -3 4473 248 103 73 chr13 30279167 30279520 -71593649 + L1ME1 LINE L1 3824 4165 -1981 2092 126 7 0 chr13 30279520 30279814 -71593355 - AluSq SINE Alu -17 296 1 4473 248 103 73 chr13 30279814 30280909 -71592260 + L1ME1 LINE L1 4165 5401 -745 776 236 64 14 chr13 30280909 30281129 -71592040 - MER96B DNA MER1_type? -182 235 5 2156 263 31 35 chr13 30281129 30281902 -71591267 + L1ME1 LINE L1 5392 6161 -5 2881 9 0 0 chr13 30282583 30282900 -71590269 - AluYb8 SINE Alu -1 317 1 314 339 41 0 chr13 30283043 30283164 -71590005 + MIR3 SINE MIR 81 206 -2 812 271 119 28 chr13 30283178 30283816 -71589353 - HsTC2a DNA Tc2 -3 739 2 306 0 0 0 chr13 30283954 30283988 -71589181 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 75 0 0 chr13 30283988 30284028 -71589141 + (GA)n Simple_repeat Simple_repeat 1 40 0 735 294 11 6 chr13 30285161 30285341 -71587828 + MIR3 SINE MIR 20 200 -8 2165 90 0 10 chr13 30287595 30287894 -71585275 - AluY SINE Alu -15 296 1 1974 170 33 0 chr13 30288486 30288821 -71584348 - MER7A DNA MER2_type -2 344 1 2553 107 33 3 chr13 30289121 30289484 -71583685 - THE1C LTR MaLR -1 374 1 2280 107 0 0 chr13 30289513 30289823 -71583346 + AluSg SINE Alu 1 310 0 384 307 136 40 chr13 30289962 30290190 -71582979 + MIR SINE MIR 13 262 0 515 287 66 0 chr13 30290396 30290563 -71582606 - MER5B DNA MER1_type 0 178 1 952 224 144 44 chr13 30291928 30292268 -71580901 - MLT1A2 LTR MaLR 0 374 1 1110 192 11 72 chr13 30292269 30292545 -71580624 - MLT1E2-int LTR MaLR -1 1734 1476 328 227 35 28 chr13 30292601 30292738 -71580431 - MLT1E2-int LTR MaLR -490 881 653 1539 230 0 3 chr13 30292756 30293108 -71580061 - L1P LINE L1 -3453 2693 2343 6087 202 38 7 chr13 30293141 30295232 -71577937 + L1PA15 LINE L1 4031 6148 -17 1909 221 10 10 chr13 30295907 30296305 -71576864 - MLT1E2-int LTR MaLR -714 657 260 2737 233 176 32 chr13 30296332 30297870 -71575299 + L1M3e LINE L1 1 2361 -4676 475 283 72 0 chr13 30297991 30298129 -71575040 - MIR SINE MIR -99 163 16 5711 85 2 6 chr13 30298393 30299179 -71573990 - L1PA11 LINE L1 0 6174 5392 241 302 60 12 chr13 30299211 30299295 -71573874 - MIR SINE MIR -61 147 64 252 239 90 30 chr13 30299934 30300068 -71573101 + HAL1b LINE L1 778 919 -429 1362 177 13 17 chr13 30300073 30300310 -71572859 + AluJo SINE Alu 49 284 -28 210 71 0 0 chr13 30300310 30300338 -71572831 + (TA)n Simple_repeat Simple_repeat 2 29 0 202 196 39 0 chr13 30300399 30300450 -71572719 + (TA)n Simple_repeat Simple_repeat 1 53 0 594 360 92 15 chr13 30300933 30301333 -71571836 + L2 LINE L2 2230 2660 -654 352 367 48 59 chr13 30301431 30301701 -71571468 + L2 LINE L2 3004 3270 -2 1593 252 42 113 chr13 30301791 30302834 -71570335 + L1ME LINE L1 142 1110 -5095 * 3264 272 58 45 chr13 30302818 30303254 -71569915 + L1ME LINE L1 1495 1924 -4291 1581 249 123 19 chr13 30303254 30303821 -71569348 - MLT1E2 LTR MaLR 0 626 1 3264 272 58 45 chr13 30303821 30304347 -71568822 + L1ME LINE L1 1924 2441 -3774 1393 212 3 12 chr13 30304347 30304672 -71568497 + L1MB7 LINE L1 5862 6183 -1 3264 272 58 45 chr13 30304672 30304942 -71568227 + L1ME LINE L1 2441 2706 -3509 444 0 29 43 chr13 30304942 30305011 -71568158 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 3264 272 58 45 chr13 30305011 30305025 -71568144 + L1ME LINE L1 2706 2718 -3497 2304 108 0 0 chr13 30305025 30305331 -71567838 + AluY SINE Alu 1 306 -5 3264 272 58 45 chr13 30305331 30305958 -71567211 + L1ME LINE L1 2718 3335 -2880 2231 133 0 0 chr13 30305958 30306267 -71566902 + AluSx SINE Alu 3 311 -1 3264 272 58 45 chr13 30306267 30306878 -71566291 + L1ME LINE L1 3335 3971 -2244 1523 205 158 2 chr13 30306885 30307285 -71565884 - MLT1D LTR MaLR -42 463 2 200 244 44 0 chr13 30307534 30307579 -71565590 + L3 LINE CR1 1428 1474 -103 890 230 148 26 chr13 30307615 30307967 -71565202 - L1MC4a LINE L1 -2 7806 7412 * 2359 252 91 19 chr13 30307962 30308423 -71564746 + L1ME LINE L1 3961 4387 -1828 2147 125 0 3 chr13 30308423 30308720 -71564449 + AluSx SINE Alu 1 296 -16 2359 252 91 19 chr13 30308720 30309363 -71563806 + L1ME LINE L1 4387 5251 -964 187 358 12 37 chr13 30309368 30309449 -71563720 - MIR SINE MIR -171 91 13 193 340 137 46 chr13 30309714 30309867 -71563302 + MIR3 SINE MIR 15 181 -27 2049 97 4 0 chr13 30311056 30311358 -71561811 - AluSg SINE Alu 0 316 14 1118 209 90 16 chr13 30312450 30312761 -71560408 - L1ME3A LINE L1 -219 5951 5618 223 277 0 46 chr13 30312973 30313038 -71560131 - L2 LINE L2 0 3272 3211 322 269 201 20 chr13 30313081 30313230 -71559939 - MIR3 SINE MIR 0 208 33 21 0 0 0 chr13 30315446 30315467 -71557702 + AT_rich Low_complexity Low_complexity 1 21 0 389 256 23 30 chr13 30316146 30316279 -71556890 + MER58C DNA MER1_type 80 211 -4 311 254 115 16 chr13 30317525 30317647 -71555522 + MER94 DNA DNA 1 134 0 668 207 41 0 chr13 30317713 30317858 -71555311 - MIR SINE MIR -33 229 79 236 342 72 26 chr13 30317878 30318071 -71555098 - MIR SINE MIR -14 248 47 371 337 29 49 chr13 30318930 30319176 -71553993 + MIR SINE MIR 16 256 -6 351 300 138 12 chr13 30319190 30319350 -71553819 + MIR SINE MIR 77 256 -6 21 0 0 0 chr13 30320760 30320781 -71552388 + AT_rich Low_complexity Low_complexity 1 21 0 336 301 165 0 chr13 30321437 30321570 -71551599 - MIR SINE MIR -1 261 107 243 208 14 42 chr13 30322203 30322275 -71550894 - MIR SINE MIR -1 261 192 221 284 111 0 chr13 30322345 30322426 -71550743 - MIR SINE MIR -78 184 95 31 44 0 0 chr13 30322763 30322808 -71550361 + AT_rich Low_complexity Low_complexity 1 45 0 1200 228 37 51 chr13 30322811 30322986 -71550183 - AluJo SINE Alu -20 292 121 420 37 0 0 chr13 30322986 30323040 -71550129 + (TG)n Simple_repeat Simple_repeat 1 54 0 1200 228 37 51 chr13 30323040 30323158 -71550011 - AluJo SINE Alu -191 121 3 279 282 150 23 chr13 30323391 30323611 -71549558 + L1MEd LINE L1 994 1241 -4878 1138 277 43 26 chr13 30323665 30324127 -71549042 + L1MC4a LINE L1 5602 6071 -1737 2148 119 0 10 chr13 30324656 30324968 -71548201 + AluSc SINE Alu 1 309 0 259 254 0 0 chr13 30325812 30325879 -71547290 + L1MC4a LINE L1 5199 5265 -881 4480 126 26 10 chr13 30328188 30328905 -71544264 + L1PA15 LINE L1 5437 6165 0 257 360 122 48 chr13 30328945 30329298 -71543871 - L2 LINE L2 0 3272 2894 256 282 29 29 chr13 30329557 30329660 -71543509 + MIR SINE MIR 18 120 -88 515 301 49 11 chr13 30329660 30329843 -71543326 + MIR SINE MIR 25 214 -48 400 312 106 32 chr13 30329844 30330212 -71542957 + LTR16C LTR ERVL 1 490 -1 401 146 45 22 chr13 30331193 30331282 -71541887 + L1MC5 LINE L1 7352 7442 -519 219 333 14 0 chr13 30331398 30331470 -71541699 - MIR SINE MIR -26 236 164 931 226 114 68 chr13 30331471 30331875 -71541294 - MLT1H LTR MaLR -7 588 1 226 288 71 94 chr13 30332109 30332279 -71540890 + L2 LINE L2 3147 3312 -1 487 255 108 85 chr13 30333145 30333321 -71539848 + L1MC4a LINE L1 5589 5776 -2032 333 0 0 0 chr13 30333321 30333358 -71539811 + (TA)n Simple_repeat Simple_repeat 1 37 0 487 255 108 85 chr13 30333358 30333487 -71539682 + L1MC4a LINE L1 5776 5901 -1907 349 311 39 0 chr13 30334371 30334474 -71538695 - MER5B DNA MER1_type 0 178 72 770 249 55 76 chr13 30334486 30334816 -71538353 - MER77 LTR ERV1 -230 375 53 645 254 47 31 chr13 30334847 30335040 -71538129 + L1ME3A LINE L1 5967 6162 -8 226 282 0 29 chr13 30335307 30335395 -71537774 + GA-rich Low_complexity Low_complexity 1 85 0 600 261 85 94 chr13 30335510 30335862 -71537307 - LTR16A1 LTR ERVL -31 426 78 3016 158 34 16 chr13 30336226 30336778 -71536391 + L1MA8 LINE L1 5545 6106 -185 1928 101 0 36 chr13 30336780 30337058 -71536111 + AluY SINE Alu 1 268 -43 640 90 0 0 chr13 30337058 30337147 -71536022 + Alu SINE Alu 220 308 -4 1041 65 0 0 chr13 30337154 30337278 -71535891 + AluY SINE Alu 7 130 -181 5021 148 35 13 chr13 30337282 30337834 -71535335 + L1PB4 LINE L1 5219 5805 -351 414 0 0 0 chr13 30337834 30337880 -71535289 + (TA)n Simple_repeat Simple_repeat 2 47 0 5021 148 35 13 chr13 30337880 30338240 -71534929 + L1PB4 LINE L1 5805 6156 0 2048 154 0 0 chr13 30338925 30339224 -71533945 + AluSx SINE Alu 1 299 -13 203 262 0 0 chr13 30340336 30340378 -71532791 + L2 LINE L2 3254 3295 -18 180 0 0 0 chr13 30340527 30340547 -71532622 + (T)n Simple_repeat Simple_repeat 1 20 0 241 228 18 0 chr13 30341154 30341211 -71531958 + CT-rich Low_complexity Low_complexity 1 58 0 1634 199 17 0 chr13 30341293 30341595 -71531574 - AluJo SINE Alu -5 307 1 234 379 23 43 chr13 30341704 30342053 -71531116 + L2 LINE L2 2722 3063 -209 218 146 0 36 chr13 30342218 30342273 -71530896 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 25 0 0 0 chr13 30342503 30342528 -71530641 + AT_rich Low_complexity Low_complexity 1 25 0 239 242 250 24 chr13 30342565 30342689 -71530480 - MIR SINE MIR -101 161 10 24 32 0 0 chr13 30342904 30342935 -71530234 + AT_rich Low_complexity Low_complexity 1 31 0 900 226 40 82 chr13 30342995 30343349 -71529820 + MER47A DNA MER2_type 27 365 -1 2736 37 0 0 chr13 30343522 30343848 -71529321 - L1PA4 LINE L1 -3 6152 5827 273 29 0 0 chr13 30344303 30344337 -71528832 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 182 359 57 31 chr13 30344337 30344496 -71528673 - L2 LINE L2 -740 2574 2412 2109 135 3 10 chr13 30344752 30345064 -71528105 - AluY SINE Alu -1 310 1 713 310 26 9 chr13 30347987 30348216 -71524953 + MIR SINE MIR 18 250 -12 449 303 191 8 chr13 30350053 30350294 -71522875 + L3b LINE CR1 1202 1486 -97 22 0 0 0 chr13 30351918 30351940 -71521229 + AT_rich Low_complexity Low_complexity 1 22 0 3055 149 14 60 chr13 30352142 30352210 -71520959 - MLT2B3 LTR ERVL -2 518 448 617 48 29 19 chr13 30352210 30352313 -71520856 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 3055 149 14 60 chr13 30352313 30352839 -71520330 - MLT2B3 LTR ERVL -72 448 1 1302 254 123 41 chr13 30353214 30353496 -71519673 - MER21B LTR ERV1 -128 735 478 2332 95 0 16 chr13 30353496 30353813 -71519356 + AluSq SINE Alu 1 312 -1 1302 254 123 41 chr13 30353813 30354194 -71518975 - MER21B LTR ERV1 -385 478 17 338 263 0 90 chr13 30354221 30354377 -71518792 + L2 LINE L2 3172 3313 0 314 169 0 46 chr13 30354536 30354601 -71518568 - L2 LINE L2 -1 3312 3251 2358 141 53 12 chr13 30354698 30355109 -71518060 - MSTA LTR MaLR 0 428 1 1817 164 3 20 chr13 30355682 30355981 -71517188 - AluJo SINE Alu -18 294 1 715 285 96 22 chr13 30357490 30357550 -71515619 + MLT1J LTR MaLR 61 115 -396 2351 75 0 3 chr13 30357550 30357843 -71515326 - AluY SINE Alu -19 292 1 715 285 96 22 chr13 30357843 30358094 -71515075 + MLT1J LTR MaLR 115 395 -116 737 262 93 42 chr13 30359134 30359194 -71513975 + MLT1J LTR MaLR 61 116 -395 2387 68 0 3 chr13 30359194 30359487 -71513682 - AluY SINE Alu -19 292 1 737 262 93 42 chr13 30359487 30359758 -71513411 + MLT1J LTR MaLR 116 409 -102 257 224 0 0 chr13 30359951 30360000 -71513169 + (TATG)n Simple_repeat Simple_repeat 3 51 0 247 388 62 31 chr13 30361509 30361736 -71511433 - L2 LINE L2 -114 3158 2925 301 255 153 0 chr13 30361861 30361959 -71511210 + L2 LINE L2 3201 3313 0 386 259 20 51 chr13 30362026 30362224 -71510945 + L1M1 LINE L1 5661 5849 -318 22 0 0 0 chr13 30362467 30362489 -71510680 + AT_rich Low_complexity Low_complexity 1 22 0 760 249 79 9 chr13 30362609 30362854 -71510315 + MIR SINE MIR 1 258 -4 451 302 59 105 chr13 30362975 30363587 -71509582 - L2 LINE L2 -576 2738 2155 2813 169 58 21 chr13 30363654 30364188 -71508981 + MLT2B3 LTR ERVL 1 554 0 334 350 32 6 chr13 30364200 30364357 -71508812 - L1M4 LINE L1 -1983 4163 4003 208 139 0 0 chr13 30364678 30364714 -71508455 + (T)n Simple_repeat Simple_repeat 1 36 0 377 150 170 20 chr13 30365412 30365512 -71507657 + MER58 DNA MER1_type 2306 2420 0 426 224 24 97 chr13 30365722 30365887 -71507282 - MER20 DNA MER1_type -66 153 1 816 226 17 52 chr13 30370315 30370545 -71502624 + MER58A DNA MER1_type 2 223 -1 253 78 0 39 chr13 30370859 30370910 -71502259 + (CATTT)n Simple_repeat Simple_repeat 2 50 0 553 93 43 14 chr13 30371249 30371389 -71501780 + (TAGA)n Simple_repeat Simple_repeat 1 144 0 223 266 16 47 chr13 30371412 30371476 -71501693 + MIR SINE MIR 17 78 -130 255 347 162 0 chr13 30372665 30372838 -71500331 - MIR SINE MIR -54 208 8 208 346 99 0 chr13 30372892 30372973 -71500196 - MIR SINE MIR -86 122 34 1484 223 43 43 chr13 30373214 30373676 -71499493 - MLT1C LTR MaLR 0 467 6 296 242 107 13 chr13 30373875 30373989 -71499180 + MIR SINE MIR 20 156 -63 2285 95 0 3 chr13 30375879 30376174 -71496995 + AluSg SINE Alu 1 294 -16 231 36 0 0 chr13 30376175 30376203 -71496966 + (TA)n Simple_repeat Simple_repeat 1 28 0 392 318 143 49 chr13 30376203 30376273 -71496896 + L2 LINE L2 2709 2771 -542 2133 146 0 0 chr13 30376273 30376567 -71496602 + AluSx SINE Alu 1 294 -18 392 318 143 49 chr13 30376567 30377035 -71496134 + L2 LINE L2 2771 3302 -11 2290 98 3 3 chr13 30377085 30377380 -71495789 + AluSc SINE Alu 1 295 -14 2323 92 3 20 chr13 30377606 30377932 -71495237 + AluSx SINE Alu 1 312 0 1463 179 7 11 chr13 30378995 30379268 -71493901 - AluJb SINE Alu 0 312 41 353 294 61 103 chr13 30379756 30380344 -71492825 + L2 LINE L2 2696 3270 -43 581 267 204 55 chr13 30381660 30382128 -71491041 + L2 LINE L2 2709 3281 -32 1833 163 14 7 chr13 30382128 30382423 -71490746 - AluJo SINE Alu -15 297 1 581 267 204 55 chr13 30382423 30382462 -71490707 + L2 LINE L2 3281 3313 0 217 214 0 0 chr13 30383066 30383108 -71490061 + (TG)n Simple_repeat Simple_repeat 1 42 0 653 256 14 72 chr13 30383158 30383381 -71489788 + MIR SINE MIR 19 228 -34 1847 185 118 10 chr13 30383680 30384096 -71489073 + LOR1b LTR ERV1 1 461 0 413 235 12 0 chr13 30384261 30384342 -71488827 - MIR SINE MIR -21 241 160 360 242 129 57 chr13 30384397 30384414 -71488755 + MER5A DNA MER1_type 35 49 -140 2351 192 30 13 chr13 30384414 30384873 -71488296 - MLT1C LTR MaLR 0 467 1 360 242 129 57 chr13 30384873 30384979 -71488190 + MER5A DNA MER1_type 49 167 -22 208 374 48 0 chr13 30385273 30385356 -71487813 - L2 LINE L2 -44 3228 3142 2147 114 0 0 chr13 30385381 30385686 -71487483 + AluSg1 SINE Alu 1 305 0 2063 197 50 36 chr13 30386613 30387110 -71486059 - MLT1D LTR MaLR 0 505 2 213 259 0 56 chr13 30387390 30387444 -71485725 + L2 LINE L2 3201 3251 -21 21 0 0 0 chr13 30387445 30387466 -71485703 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 30388075 30388097 -71485072 + AT_rich Low_complexity Low_complexity 1 22 0 4438 136 115 98 chr13 30388809 30390168 -71483001 + pTR5 LTR ERV1 743 2295 -143 3135 122 8 12 chr13 30390971 30391470 -71481699 - LOR1a LTR ERV1 0 497 1 1884 142 112 45 chr13 30391497 30391656 -71481513 + MSTA LTR MaLR 1 148 -280 2258 119 0 0 chr13 30391656 30391958 -71481211 + AluSx SINE Alu 2 303 -9 1884 142 112 45 chr13 30391958 30392199 -71480970 + MSTA LTR MaLR 148 428 0 425 281 53 9 chr13 30393057 30393171 -71479998 + MER5B DNA MER1_type 33 151 -27 328 316 53 0 chr13 30394965 30395098 -71478071 + MIR SINE MIR 115 254 -8 365 262 187 13 chr13 30395247 30395472 -71477697 - L2 LINE L2 -217 3096 2833 275 244 195 0 chr13 30395499 30395581 -71477588 + MER5A DNA MER1_type 9 106 -83 278 374 10 10 chr13 30395644 30395743 -71477426 - L2 LINE L2 -557 2757 2659 2324 88 0 16 chr13 30398181 30398487 -71474682 + AluY SINE Alu 1 301 -10 295 343 76 0 chr13 30398724 30398829 -71474340 + L2 LINE L2 3192 3304 -9 2094 96 4 0 chr13 30398930 30399240 -71473929 + AluSx SINE Alu 1 311 0 189 315 0 67 chr13 30399358 30399447 -71473722 + L2 LINE L2 3231 3313 0 412 308 54 57 chr13 30399843 30400177 -71472992 + MLT1J LTR MaLR 140 472 -39 1470 88 83 0 chr13 30400970 30401187 -71471982 - LTR12 LTR ERV1 0 714 480 281 253 11 0 chr13 30401187 30401282 -71471887 - LTR30 LTR ERV1 -79 643 548 1798 146 87 65 chr13 30401286 30401826 -71471343 - pTR5 LTR ERV1 -437 1683 34 246 247 82 0 chr13 30402161 30402246 -71470923 - MIR SINE MIR -86 176 85 453 224 56 7 chr13 30402406 30402549 -71470620 - pTR5 LTR ERV1 -1240 1198 1049 543 181 62 62 chr13 30402554 30402714 -71470455 - pTR5 LTR ERV1 -1536 902 743 333 0 0 0 chr13 30403319 30403356 -71469813 + (TG)n Simple_repeat Simple_repeat 2 38 0 235 208 0 21 chr13 30403369 30403417 -71469752 - MER2 DNA MER2_type -14 331 285 474 191 11 0 chr13 30403440 30403529 -71469640 - MER2 DNA MER2_type -246 99 10 22 0 0 0 chr13 30403621 30403643 -71469526 + AT_rich Low_complexity Low_complexity 1 22 0 2143 29 0 0 chr13 30403758 30404024 -71469145 - L1PA2 LINE L1 -965 5181 4913 7896 12 0 0 chr13 30404024 30404993 -71468176 + L1PA2 LINE L1 5185 6153 -2 27 49 0 0 chr13 30406750 30406791 -71466378 + AT_rich Low_complexity Low_complexity 1 41 0 331 270 0 0 chr13 30406793 30406867 -71466302 - MIR3 SINE MIR -30 178 105 183 42 0 0 chr13 30407421 30407445 -71465724 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 313 246 187 8 chr13 30408260 30408394 -71464775 - MIR SINE MIR -56 206 49 2219 113 0 0 chr13 30411405 30411696 -71461473 + AluSq SINE Alu 2 292 -21 458 250 10 0 chr13 30411752 30411852 -71461317 + MER5A DNA MER1_type 9 109 -80 309 243 0 0 chr13 30412346 30412416 -71460753 - Charlie8 DNA MER1_type -2199 218 149 2346 95 0 0 chr13 30412418 30412714 -71460455 - AluY SINE Alu -15 296 1 188 347 107 0 chr13 30412943 30413018 -71460151 - MIR3 SINE MIR -41 167 85 528 16 0 0 chr13 30413846 30413907 -71459262 + (TAAAA)n Simple_repeat Simple_repeat 1 61 0 5236 134 14 27 chr13 30414275 30414766 -71458403 + L1PA16 LINE L1 4996 5492 -674 2205 109 10 0 chr13 30414766 30415068 -71458101 + AluSq SINE Alu 1 305 -8 5236 134 14 27 chr13 30415068 30415755 -71457414 + L1PA16 LINE L1 5492 6163 -3 2160 136 0 0 chr13 30415755 30416065 -71457104 + AluY SINE Alu 1 310 -1 225 187 91 18 chr13 30416097 30416158 -71457011 + MIR SINE MIR 84 142 -66 266 270 20 40 chr13 30416834 30416934 -71456235 - MIR SINE MIR 0 262 165 649 220 107 0 chr13 30416969 30417128 -71456041 - MIR SINE MIR -86 176 1 1916 115 0 0 chr13 30417913 30418166 -71455003 - AluSq SINE Alu -60 253 1 26 30 0 0 chr13 30419082 30419115 -71454054 + AT_rich Low_complexity Low_complexity 1 33 0 34 0 0 0 chr13 30419250 30419284 -71453885 + AT_rich Low_complexity Low_complexity 1 34 0 252 203 34 0 chr13 30419319 30419378 -71453791 + GA-rich Low_complexity Low_complexity 3 63 0 95 39 0 0 chr13 30419525 30419655 -71453514 + AT_rich Low_complexity Low_complexity 1 130 0 357 319 140 22 chr13 30421244 30421262 -71451907 + MIR SINE MIR 6 20 -242 340 105 0 0 chr13 30421262 30421319 -71451850 + L1PA6 LINE L1 6098 6154 0 357 319 140 22 chr13 30421319 30421529 -71451640 + MIR SINE MIR 20 261 -1 1499 195 81 24 chr13 30421532 30421901 -71451268 + MLT1B LTR MaLR 1 390 0 859 340 42 15 chr13 30422191 30422665 -71450504 + MLT1J LTR MaLR 5 491 -20 242 235 37 37 chr13 30422954 30423035 -71450134 + LTR16C LTR ERVL 309 389 -102 2000 198 22 17 chr13 30425787 30426197 -71446972 + MLT2C2 LTR ERVL 1 412 -52 220 329 29 0 chr13 30426261 30426331 -71446838 - MIR SINE MIR -3 259 188 23 0 0 0 chr13 30426649 30426672 -71446497 + AT_rich Low_complexity Low_complexity 1 23 0 238 241 0 0 chr13 30427142 30427196 -71445973 + (CAA)n Simple_repeat Simple_repeat 3 56 0 2296 120 0 9 chr13 30427404 30427720 -71445449 - AluSq SINE Alu 0 313 1 729 274 62 11 chr13 30427756 30428113 -71445056 + L1ME4a LINE L1 5510 5884 -237 269 350 31 0 chr13 30428145 30428242 -71444927 + MIR3 SINE MIR 85 184 -24 1751 180 10 43 chr13 30428578 30428973 -71444196 - MLT2C1 LTR ERVL 0 397 16 275 305 0 73 chr13 30430177 30430341 -71442828 - MLT1K LTR MaLR 0 588 437 405 0 0 0 chr13 30431020 30431065 -71442104 + (TG)n Simple_repeat Simple_repeat 1 45 0 283 326 76 7 chr13 30431353 30431497 -71441672 - MIR3 SINE MIR -3 205 52 1345 150 65 20 chr13 30431681 30431928 -71441241 + MER1B DNA MER1_type 1 258 -81 310 273 98 100 chr13 30433062 30433421 -71439748 + L1M2 LINE L1 652 1009 -5840 6463 123 40 20 chr13 30433918 30435071 -71438098 + Tigger3b DNA MER2_type 54 1229 -2 198 0 0 0 chr13 30435097 30435119 -71438050 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 2053 140 0 0 chr13 30435119 30435398 -71437771 - AluSx SINE Alu -33 279 1 528 244 90 26 chr13 30435455 30435611 -71437558 + MIR SINE MIR 19 184 -78 2485 197 117 24 chr13 30436159 30437020 -71436149 - LTR28 LTR ERV1 0 1020 3 313 250 46 0 chr13 30438375 30438483 -71434686 + MER103 DNA DNA 17 129 -37 212 299 0 46 chr13 30439071 30439158 -71434011 + MER5A DNA MER1_type 18 100 -89 23 0 0 0 chr13 30439394 30439417 -71433752 + AT_rich Low_complexity Low_complexity 1 23 0 661 285 22 0 chr13 30440312 30440491 -71432678 - MER5A DNA MER1_type -1 188 6 473 260 39 0 chr13 30440582 30440709 -71432460 - Charlie8 DNA MER1_type -2253 164 33 204 354 0 15 chr13 30441244 30441309 -71431860 - MER5B DNA MER1_type -27 151 88 301 300 0 69 chr13 30442040 30442170 -71430999 + MIR SINE MIR 71 191 -71 914 192 13 57 chr13 30442301 30442530 -71430639 - MER20 DNA MER1_type 0 219 1 198 235 0 0 chr13 30444042 30444076 -71429093 + L2 LINE L2 434 467 -2847 2056 149 0 0 chr13 30444920 30445229 -71427940 + AluSx SINE Alu 1 309 -3 243 297 7 65 chr13 30445424 30445562 -71427607 - MIR3 SINE MIR 0 208 79 1457 226 63 29 chr13 30445578 30446025 -71427144 - LTR40b LTR ERVL 0 462 1 547 259 21 0 chr13 30446032 30446175 -71426994 - HERVL40 LTR ERVL -8 5522 5377 317 268 121 42 chr13 30446502 30446676 -71426493 + MLT1J2 LTR MaLR 135 335 -115 1971 204 56 45 chr13 30446676 30446718 -71426451 - MLT2B1 LTR ERVL 0 520 480 801 90 15 8 chr13 30446718 30446852 -71426317 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 1971 204 56 45 chr13 30446852 30447323 -71425846 - MLT2B1 LTR ERVL -40 480 1 317 268 121 42 chr13 30447323 30447387 -71425782 + MLT1J2 LTR MaLR 335 392 -58 330 316 6 17 chr13 30447512 30447686 -71425483 + L1ME3A LINE L1 5768 5939 -231 260 53 26 0 chr13 30447892 30447930 -71425239 + (TA)n Simple_repeat Simple_repeat 2 40 0 9535 90 4 0 chr13 30448816 30450149 -71423020 + L1PA7 LINE L1 3229 4566 -1580 6881 62 2 6 chr13 30450149 30451044 -71422125 + L1PA7 LINE L1 5261 6154 0 1843 160 3 10 chr13 30451106 30451406 -71421763 + AluJo SINE Alu 1 298 -14 2173 130 39 33 chr13 30452436 30452798 -71420371 + THE1B LTR MaLR 1 364 0 365 343 28 28 chr13 30452846 30452989 -71420180 + L2 LINE L2 2943 3085 -187 1072 207 32 0 chr13 30454754 30454971 -71418198 - MER58A DNA MER1_type 0 224 1 1934 248 18 2 chr13 30455369 30455813 -71417356 + MER74C LTR ERVL 10 460 0 454 309 29 43 chr13 30456809 30456866 -71416303 + MIR SINE MIR 56 112 -150 1571 196 83 0 chr13 30456866 30457202 -71415967 + MLT1A1 LTR MaLR 2 365 0 454 309 29 43 chr13 30457202 30457354 -71415815 + MIR SINE MIR 112 262 0 203 162 0 27 chr13 30458151 30458188 -71414981 + GA-rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 30458202 30458226 -71414943 + AT_rich Low_complexity Low_complexity 1 24 0 404 210 42 17 chr13 30458961 30459080 -71414089 - L1ME4a LINE L1 -264 5857 5736 277 296 46 0 chr13 30459394 30459502 -71413667 + L1MC4 LINE L1 7188 7300 -742 1012 320 44 35 chr13 30459629 30460187 -71412982 + L1M3d LINE L1 1 511 -5380 6299 190 27 16 chr13 30460195 30462362 -71410807 + L1MB1 LINE L1 3973 6168 0 336 202 119 9 chr13 30462394 30462503 -71410666 - MLT1I LTR MaLR -8 401 281 721 293 61 51 chr13 30462770 30463341 -71409828 + L1MC4 LINE L1 7440 8016 -26 3167 121 15 4 chr13 30463706 30464181 -71408988 + MER1A DNA MER1_type 1 528 -1 220 224 0 0 chr13 30464978 30465027 -71408142 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 194 152 0 22 chr13 30466265 30466311 -71406858 + (TA)n Simple_repeat Simple_repeat 2 46 0 306 306 16 50 chr13 30467478 30467599 -71405570 + L2 LINE L2 3146 3262 -10 1156 228 19 29 chr13 30469456 30469589 -71403580 - MER2 DNA MER2_type 0 345 212 1253 186 15 0 chr13 30469589 30469852 -71403317 + L1MA4 LINE L1 6028 6294 -6 1156 228 19 29 chr13 30469852 30470025 -71403144 - MER2 DNA MER2_type -133 212 42 235 211 0 18 chr13 30470054 30470111 -71403058 - MER112 DNA MER1_type -204 56 1 198 360 0 0 chr13 30470611 30470686 -71402483 + L2 LINE L2 3239 3313 0 283 339 8 8 chr13 30470870 30470988 -71402181 + MER117 DNA MER1_type 1 118 -79 22 0 0 0 chr13 30472095 30472117 -71401052 + AT_rich Low_complexity Low_complexity 1 22 0 979 203 51 18 chr13 30472651 30472868 -71400301 - MER58A DNA MER1_type 0 224 1 452 286 109 24 chr13 30473041 30473251 -71399918 + MIR SINE MIR 9 236 -26 1072 264 33 6 chr13 30473264 30473597 -71399572 + HAL1b LINE L1 296 637 -711 263 284 39 65 chr13 30473755 30473910 -71399259 + MLT1J1 LTR MaLR 18 168 -278 198 233 0 23 chr13 30474822 30474865 -71398304 - MIR3 SINE MIR -23 185 144 240 280 161 0 chr13 30477790 30477908 -71395261 - MIR SINE MIR -50 212 76 586 302 149 0 chr13 30479006 30479228 -71393941 - MIR SINE MIR 0 262 8 240 211 0 0 chr13 30479259 30479335 -71393834 + GA-rich Low_complexity Low_complexity 1 76 0 3691 221 60 57 chr13 30479407 30480629 -71392540 + MER69B DNA AcHobo 2 1226 0 429 294 81 54 chr13 30481661 30481882 -71391287 - MIR SINE MIR -22 240 14 336 359 113 37 chr13 30483110 30483703 -71389466 + L2 LINE L2 2293 2930 -384 682 215 14 7 chr13 30483735 30483879 -71389290 + MER5A DNA MER1_type 45 189 0 252 386 28 88 chr13 30483880 30484131 -71389038 + L2 LINE L2 2985 3220 -52 792 295 49 16 chr13 30484139 30484383 -71388786 - MIR SINE MIR 0 262 11 1244 168 7 91 chr13 30484956 30485230 -71387939 + MLT1B LTR MaLR 66 316 -74 1713 171 51 21 chr13 30485264 30485598 -71387571 + MER2 DNA MER2_type 1 344 0 2970 174 50 84 chr13 30487452 30488206 -71384963 - MER44D DNA MER2_type -3 602 2 528 16 0 0 chr13 30488207 30488268 -71384901 + (TG)n Simple_repeat Simple_repeat 2 62 0 194 225 0 113 chr13 30488285 30488356 -71384813 - MIR SINE MIR -79 183 121 197 361 28 49 chr13 30488500 30488683 -71384486 + MER5A DNA MER1_type 14 154 -35 390 323 19 32 chr13 30488525 30488565 -71384604 - MER5B DNA MER1_type -25 153 114 339 25 0 0 chr13 30488565 30488605 -71384564 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 390 323 19 32 chr13 30488605 30488719 -71384450 - MER5B DNA MER1_type -64 114 1 26 30 0 0 chr13 30490288 30490321 -71382848 + AT_rich Low_complexity Low_complexity 1 33 0 526 293 126 75 chr13 30490619 30491056 -71382113 - L2 LINE L2 -1 3271 2813 591 240 79 17 chr13 30492042 30492221 -71380948 - MLT1K LTR MaLR -125 490 275 640 242 195 0 chr13 30492225 30492440 -71380729 - MIR SINE MIR -1 261 5 954 284 73 24 chr13 30492779 30493191 -71379978 - L2 LINE L2 -54 3259 2828 275 315 151 42 chr13 30493317 30493727 -71379442 + L2 LINE L2 2319 2773 -541 403 303 79 24 chr13 30494069 30494234 -71378935 + L2 LINE L2 2350 2523 -791 1672 232 63 8 chr13 30494234 30494726 -71378443 - LTR53 LTR ERVL 0 519 1 5885 230 20 8 chr13 30494950 30496195 -71376974 - HERVL74 LTR ERVL -2335 3350 2091 4584 207 39 21 chr13 30496356 30497395 -71375774 - HERVL74 LTR ERVL -3593 2092 1036 673 204 90 12 chr13 30497473 30497640 -71375529 - HERVL74 LTR ERVL -2587 969 790 281 236 14 0 chr13 30497728 30497800 -71375369 + tRNA-Met-i tRNA tRNA 1 73 -2 1287 242 101 31 chr13 30498041 30498517 -71374652 - LTR53 LTR ERVL 0 519 11 703 315 137 24 chr13 30498522 30499227 -71373942 + L2 LINE L2 2519 3308 -5 691 239 20 65 chr13 30499530 30499731 -71373438 - MIR SINE MIR -23 239 48 210 156 0 0 chr13 30499754 30499799 -71373370 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 1606 156 45 39 chr13 30499800 30500133 -71373036 - MLT2C1 LTR ERVL -62 335 1 748 357 124 30 chr13 30501321 30502124 -71371045 - L2 LINE L2 -35 3278 2377 2493 78 0 0 chr13 30502911 30503219 -71369950 + AluY SINE Alu 1 308 -3 257 103 59 0 chr13 30503800 30503868 -71369301 + (TA)n Simple_repeat Simple_repeat 2 73 0 316 273 166 33 chr13 30505027 30505200 -71367969 - MLT1J1 LTR MaLR -2 407 232 362 181 8 134 chr13 30505208 30505299 -71367870 - MLT1I LTR MaLR -253 156 84 2598 104 6 6 chr13 30505299 30505663 -71367506 - THE1B LTR MaLR 0 364 1 362 181 8 134 chr13 30505663 30505698 -71367471 - MLT1I LTR MaLR -325 84 46 2183 118 6 10 chr13 30506845 30507158 -71366011 - AluSx SINE Alu 0 312 1 181 366 84 0 chr13 30509089 30509160 -71364009 - L2 LINE L2 -69 3203 3127 232 391 53 0 chr13 30509271 30509404 -71363765 - L2 LINE L2 -224 3048 2909 352 211 119 0 chr13 30509700 30509809 -71363360 - MIR SINE MIR -4 258 137 204 261 109 11 chr13 30510033 30510125 -71363044 - MIR SINE MIR -56 206 106 * 668 309 5 5 chr13 30510102 30510325 -71362844 - L2 LINE L2 -554 2760 2538 470 276 130 60 chr13 30510480 30510864 -71362305 + L2 LINE L2 2885 3295 -18 182 336 133 0 chr13 30511397 30511525 -71361644 - MIR SINE MIR -111 151 7 414 220 0 0 chr13 30512279 30512379 -71360790 + (TG)n Simple_repeat Simple_repeat 2 101 0 337 303 0 0 chr13 30512392 30512481 -71360688 - L1MC4 LINE L1 -1340 6702 6614 186 133 0 0 chr13 30512484 30512514 -71360655 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 245 130 0 0 chr13 30512530 30512576 -71360593 + LTR66 LTR ERVL 394 439 -171 483 63 0 0 chr13 30512576 30512639 -71360530 + (TA)n Simple_repeat Simple_repeat 2 64 0 2005 170 9 3 chr13 30513846 30514188 -71358981 - MER2 DNA MER2_type 0 344 1 4249 19 0 0 chr13 30514589 30515075 -71358094 - L1PA3 LINE L1 -4 6151 5666 323 22 0 0 chr13 30515075 30515120 -71358049 + L1P LINE L1 3056 3100 -3046 427 228 118 0 chr13 30518297 30518424 -71354745 - MER69 DNA AcHobo -3 2523 2382 316 278 23 92 chr13 30619858 30620031 -71253138 - L1 LINE L1 -1083 5063 4903 813 167 0 8 chr13 30620752 30620884 -71252285 - FLAM_A SINE Alu -2 140 10 2219 87 0 3 chr13 30621338 30621627 -71251542 - AluSg SINE Alu -22 288 1 399 289 69 17 chr13 30621767 30621940 -71251229 - MER106A DNA MER1_type -54 182 1 2385 64 3 3 chr13 30622374 30622672 -71250497 + AluY SINE Alu 6 303 -8 801 283 20 20 chr13 30623523 30623774 -71249395 + MIR SINE MIR 2 252 -10 1643 113 0 4 chr13 30623909 30624148 -71249021 + AluSc SINE Alu 72 309 0 2327 96 7 0 chr13 30624792 30625093 -71248076 + AluSx SINE Alu 1 303 -9 192 186 23 47 chr13 30625174 30625217 -71247952 - L2 LINE L2 -5 3267 3226 446 173 0 0 chr13 30625217 30625292 -71247877 - MER46C DNA MER2_type -184 154 80 208 329 215 7 chr13 30625549 30626097 -71247072 - L2 LINE L2 -649 2665 2004 367 354 61 18 chr13 30626180 30626460 -71246709 - L2 LINE L2 -2050 1264 973 2237 85 0 14 chr13 30626596 30626914 -71246255 + AluSx SINE Alu 1 312 0 183 291 23 81 chr13 30627157 30627243 -71245926 + MIR3 SINE MIR 12 92 -116 591 245 60 0 chr13 30627264 30627415 -71245754 - MIR SINE MIR -2 260 101 641 308 62 42 chr13 30630046 30630464 -71242705 - HAL1b LINE L1 -725 623 190 2371 85 0 3 chr13 30630464 30630758 -71242411 - AluSg SINE Alu -17 293 1 641 308 62 42 chr13 30630758 30630891 -71242278 - HAL1b LINE L1 -1158 190 61 434 286 145 39 chr13 30631489 30631800 -71241369 - L2 LINE L2 0 3272 2929 28 0 0 0 chr13 30632101 30632129 -71241040 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr13 30632878 30632907 -71240262 + AT_rich Low_complexity Low_complexity 1 29 0 186 320 53 0 chr13 30633535 30633610 -71239559 + L2 LINE L2 3168 3246 -67 470 286 91 0 chr13 30633639 30633793 -71239376 + MIR SINE MIR 43 210 -52 250 182 78 39 chr13 30634054 30634131 -71239038 - MER91C DNA MER1_type -37 103 24 655 221 64 85 chr13 30634400 30634589 -71238580 + L2 LINE L2 3029 3212 -101 2391 86 0 0 chr13 30634589 30634891 -71238278 - AluY SINE Alu -9 302 1 655 221 64 85 chr13 30634891 30634982 -71238187 + L2 LINE L2 3212 3303 -10 489 333 183 31 chr13 30635060 30636090 -71237079 + L2 LINE L2 1995 3180 -92 213 298 167 9 chr13 30636322 30636436 -71236733 + MIR3 SINE MIR 41 172 -36 1452 204 40 13 chr13 30636584 30636883 -71236286 - AluJo SINE Alu -5 307 1 221 175 0 0 chr13 30637240 30637280 -71235889 + L2 LINE L2 3271 3310 -3 459 164 67 39 chr13 30637975 30638079 -71235090 + AluSg SINE Alu 2 108 -202 249 271 17 0 chr13 30638227 30638286 -71234883 - MER106A DNA MER1_type -176 60 1 1987 174 34 9 chr13 30638296 30638623 -71234546 + MER1B DNA MER1_type 3 337 0 2299 99 3 7 chr13 30638852 30639154 -71234015 + AluSp SINE Alu 1 301 -12 2045 145 0 3 chr13 30639165 30639462 -71233707 + AluSx SINE Alu 1 296 -16 2428 69 0 10 chr13 30639699 30640002 -71233167 + AluY SINE Alu 1 300 -11 481 248 0 39 chr13 30640700 30640829 -71232340 + MER94 DNA DNA 10 133 -1 2177 116 7 0 chr13 30641755 30642056 -71231113 + AluSx SINE Alu 1 303 -9 289 256 13 13 chr13 30642169 30642247 -71230922 + L2 LINE L2 3193 3270 -2 867 286 71 19 chr13 30642257 30642582 -71230587 + HAL1 LINE L1 1441 1782 -725 252 246 0 15 chr13 30642962 30643027 -71230142 + HAL1 LINE L1 2077 2140 -367 2259 102 7 3 chr13 30643072 30643376 -71229793 + AluSc SINE Alu 1 305 -4 446 120 13 0 chr13 30643376 30643451 -71229718 + (GA)n Simple_repeat Simple_repeat 1 76 0 493 202 0 11 chr13 30643533 30643622 -71229547 + FRAM SINE Alu 72 159 -17 920 139 21 0 chr13 30644651 30644795 -71228374 + AluSq/x SINE Alu 1 147 -166 306 119 0 0 chr13 30644795 30644837 -71228332 + AluY SINE Alu 208 249 -52 1152 149 0 70 chr13 30644837 30645065 -71228104 + AluSg/x SINE Alu 85 296 -16 192 97 0 0 chr13 30645068 30645099 -71228070 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 185 359 51 0 chr13 30645224 30645302 -71227867 + L2 LINE L2 2433 2514 -800 180 0 0 0 chr13 30645403 30645423 -71227746 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 394 96 0 0 chr13 30645433 30645485 -71227684 - MER66B LTR ERV1 -140 346 295 2435 56 0 13 chr13 30645856 30646161 -71227008 + AluY SINE Alu 1 301 -10 1613 80 0 9 chr13 30646295 30646508 -71226661 + AluY SINE Alu 1 211 -100 2365 83 10 0 chr13 30647280 30647580 -71225589 - AluY SINE Alu -8 303 1 2200 110 3 3 chr13 30647741 30648049 -71225120 - AluY SINE Alu -3 308 1 1288 183 7 129 chr13 30648050 30648330 -71224839 - L1MC5 LINE L1 -985 6976 6760 2467 75 0 0 chr13 30648330 30648636 -71224533 - AluSg SINE Alu -2 308 3 1288 183 7 129 chr13 30648636 30648766 -71224403 - L1MC5 LINE L1 -1201 6760 6616 2473 90 3 0 chr13 30649356 30649667 -71223502 + AluSp SINE Alu 1 312 -1 2258 91 0 3 chr13 30649973 30650259 -71222910 + AluSg SINE Alu 5 289 -21 14309 136 35 7 chr13 30650284 30652602 -71220567 + L1M1 LINE L1 1252 3635 -3930 2127 108 0 3 chr13 30652602 30652889 -71220280 + AluSc SINE Alu 1 286 -23 1077 168 17 0 chr13 30652890 30653069 -71220100 - Tigger1 DNA MER2_type -2236 182 1 201 181 14 28 chr13 30653085 30653157 -71220012 + (TA)n Simple_repeat Simple_repeat 1 71 0 1069 83 117 0 chr13 30653259 30653404 -71219765 - AluY SINE Alu -149 162 1 253 171 86 43 chr13 30654463 30654533 -71218636 - L1MC5 LINE L1 -45 7916 7844 594 181 47 18 chr13 30654546 30654717 -71218452 - L1MC5 LINE L1 -170 7791 7616 2025 64 45 19 chr13 30654719 30654984 -71218185 - AluY SINE Alu -7 304 33 2395 64 7 3 chr13 30654987 30655284 -71217885 - AluSg SINE Alu -12 298 1 2375 72 3 3 chr13 30655317 30655610 -71217559 - AluY SINE Alu -18 293 1 203 270 325 8 chr13 30655998 30656124 -71217045 - MIR SINE MIR -18 244 79 2464 82 0 0 chr13 30656618 30656921 -71216248 + AluSc SINE Alu 1 303 -6 566 323 108 35 chr13 30657285 30657712 -71215457 + L2 LINE L2 2308 2765 -549 531 309 75 41 chr13 30657827 30658122 -71215047 + L2 LINE L2 3005 3309 -4 21 57 0 0 chr13 30658193 30658228 -71214941 + AT_rich Low_complexity Low_complexity 1 35 0 213 230 60 80 chr13 30658256 30658356 -71214813 + L2 LINE L2 2307 2404 -910 1620 186 14 14 chr13 30658509 30658804 -71214365 + AluJo SINE Alu 5 299 -13 1878 154 0 0 chr13 30659445 30659724 -71213445 - AluSg SINE Alu -31 279 1 192 152 0 0 chr13 30659989 30660022 -71213147 + A-rich Low_complexity Low_complexity 3 35 0 1732 194 0 0 chr13 30712143 30712426 -71160743 + AluJb SINE Alu 3 285 -27 7123 64 9 29 chr13 30712609 30713734 -71159435 + L1PA7 LINE L1 5047 6152 -2 274 131 91 30 chr13 30713752 30713851 -71159318 + Charlie5 DNA MER1_type 2424 2528 -84 446 261 90 22 chr13 30713900 30714078 -71159091 - MIR SINE MIR -31 231 38 286 342 89 6 chr13 30714110 30714268 -71158901 + MER5A DNA MER1_type 8 178 -11 260 298 193 6 chr13 30715876 30716037 -71157132 - MIR SINE MIR -8 254 64 204 350 17 0 chr13 30717923 30717979 -71155190 + L3 LINE CR1 1257 1313 -264 374 232 219 26 chr13 30717979 30718134 -71155035 - MER5A DNA MER1_type -1 188 4 408 285 91 21 chr13 30718290 30718476 -71154693 + MIR SINE MIR 58 256 -6 259 236 163 41 chr13 30718810 30718933 -71154236 - MIR SINE MIR -46 216 79 352 276 0 0 chr13 30719113 30719189 -71153980 - MIR3 SINE MIR -46 162 87 188 262 0 0 chr13 30720115 30720157 -71153012 - L3 LINE CR1 -5 1572 1531 24 0 0 0 chr13 30722375 30722399 -71150770 + AT_rich Low_complexity Low_complexity 1 24 0 1965 154 10 10 chr13 30722404 30722716 -71150453 - 7SLRNA srpRNA srpRNA -4 316 5 296 297 211 27 chr13 30722817 30723002 -71150167 - MIR SINE MIR -12 250 32 449 339 28 6 chr13 30725581 30725822 -71147347 + MIR3 SINE MIR 14 259 -3 460 248 0 0 chr13 30725938 30726043 -71147126 + L1MA10 LINE L1 6230 6334 0 185 423 58 13 chr13 30726786 30726942 -71146227 - L2 LINE L2 -181 3091 2929 921 254 85 72 chr13 30727101 30727503 -71145666 - MLT1I LTR MaLR 0 409 3 198 103 0 0 chr13 30729197 30729226 -71143943 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 28 0 0 0 chr13 30730173 30730201 -71142968 + AT_rich Low_complexity Low_complexity 1 28 0 304 292 18 35 chr13 30732853 30732887 -71140282 - L2 LINE L2 -622 2692 2659 2481 112 22 30 chr13 30732887 30733254 -71139915 - THE1B LTR MaLR 0 364 1 304 292 18 35 chr13 30733254 30733332 -71139837 - L2 LINE L2 -655 2659 2582 431 266 18 18 chr13 30733621 30733730 -71139439 + L2 LINE L2 3205 3313 0 2457 181 27 61 chr13 30733835 30734392 -71138777 + MLT2B3 LTR ERVL 17 554 0 236 200 12 82 chr13 30734394 30734479 -71138690 - L2 LINE L2 -1499 1815 1737 917 280 64 32 chr13 30734657 30735000 -71138169 - LTR33 LTR ERVL -145 376 23 435 292 33 8 chr13 30735681 30735801 -71137368 - L2 LINE L2 -5 3308 3186 219 339 41 33 chr13 30737433 30737554 -71135615 - L2 LINE L2 0 3272 3151 2571 54 0 0 chr13 30737566 30737861 -71135308 + AluY SINE Alu 1 295 -16 619 250 164 12 chr13 30739266 30739510 -71133659 - MIR SINE MIR 0 262 1 200 267 47 100 chr13 30740945 30741095 -71132074 - MIR SINE MIR -76 186 45 356 261 46 39 chr13 30743378 30743508 -71129661 - MIR SINE MIR -24 238 108 264 380 30 0 chr13 30743633 30743733 -71129436 + MIR SINE MIR 20 122 -140 434 298 7 43 chr13 30744147 30744254 -71128915 + L3 LINE CR1 1384 1486 -91 2546 127 101 0 chr13 30744254 30744641 -71128528 - MSTB LTR MaLR 0 426 1 434 298 7 43 chr13 30744641 30744674 -71128495 + L3 LINE CR1 1486 1519 -58 339 121 0 0 chr13 30745678 30745736 -71127433 + (TG)n Simple_repeat Simple_repeat 2 59 0 305 255 59 39 chr13 30745921 30746023 -71127146 - LTR67 LTR ERVL -367 190 87 307 359 31 66 chr13 30746281 30746462 -71126707 + MIR SINE MIR 6 177 -85 2167 117 3 0 chr13 30746462 30746760 -71126409 + AluSx SINE Alu 1 299 -13 307 359 31 66 chr13 30746760 30746834 -71126335 + MIR SINE MIR 177 252 -10 197 194 0 0 chr13 30746802 30746838 -71126331 + L2 LINE L2 3225 3260 -12 * 247 336 57 16 chr13 30747128 30747250 -71125919 - LTR16A LTR ERVL -323 127 1 397 377 109 25 chr13 30747365 30747731 -71125438 - L2 LINE L2 -6 3307 2911 331 331 99 7 chr13 30747783 30747925 -71125244 - L2 LINE L2 -848 2466 2312 209 129 0 0 chr13 30749687 30749718 -71123451 + MIR SINE MIR 86 116 -146 303 28 0 0 chr13 30750447 30750483 -71122686 + (TC)n Simple_repeat Simple_repeat 2 37 0 257 282 84 0 chr13 30751427 30751498 -71121671 + L2 LINE L2 3237 3313 0 320 265 15 0 chr13 30751708 30751776 -71121393 + MIR SINE MIR 82 150 -58 340 315 175 10 chr13 30751781 30751981 -71121188 - MIR SINE MIR -2 260 28 2162 144 88 0 chr13 30752287 30752662 -71120507 + L1MB2 LINE L1 5732 6139 -32 797 148 128 20 chr13 30752918 30753067 -71120102 - FAM SINE Alu -11 174 10 391 333 41 14 chr13 30753181 30753328 -71119841 + MIR3 SINE MIR 54 204 -4 2524 154 29 2 chr13 30753996 30754412 -71118757 - MSTA LTR MaLR 0 428 2 1169 207 109 8 chr13 30755178 30755475 -71117694 - AluJb SINE Alu 0 326 4 2572 89 46 0 chr13 30755602 30755950 -71117219 - THE1B LTR MaLR 0 364 1 2614 56 0 0 chr13 30756144 30756450 -71116719 - AluY SINE Alu -5 306 1 478 215 93 14 chr13 30758128 30758335 -71114834 - MLT1F1 LTR MaLR 0 595 339 428 298 32 55 chr13 30758439 30758657 -71114512 - MLT1F1 LTR MaLR -275 280 68 550 265 9 18 chr13 30758721 30758944 -71114225 + L1MEc LINE L1 1410 1630 -4766 436 267 111 28 chr13 30759068 30759420 -71113749 + L1ME3A LINE L1 4575 4955 -1191 1783 182 47 21 chr13 30759426 30759806 -71113363 + MLT1B LTR MaLR 1 390 0 1922 206 86 12 chr13 30759806 30760364 -71112805 + MLT1B-int LTR MaLR 1 727 -644 352 244 0 0 chr13 30760473 30760563 -71112606 + MLT1B-int LTR MaLR 681 770 -965 2293 204 24 7 chr13 30760635 30761090 -71112079 + MLT1B-int LTR MaLR 1256 1718 -17 1580 226 46 20 chr13 30761088 30761548 -71111621 + L1ME3A LINE L1 5686 6157 -13 * 241 241 30 45 chr13 30761561 30761694 -71111475 + L1MEc LINE L1 1632 1762 -4634 385 211 36 60 chr13 30762111 30762277 -71110892 + L1MEc LINE L1 2291 2452 -3763 360 169 90 0 chr13 30762276 30762365 -71110804 + L1MB2 LINE L1 6071 6167 -4 * 535 162 12 104 chr13 30762389 30762562 -71110607 + L1MEc LINE L1 2436 2592 -3623 549 309 64 14 chr13 30763138 30763358 -71109811 + MIR SINE MIR 2 232 -30 1688 200 14 27 chr13 30763846 30764216 -71108953 - MLT1A1 LTR MaLR 0 365 1 341 280 121 38 chr13 30766376 30766508 -71106661 + MIR SINE MIR 33 175 -87 2140 118 7 0 chr13 30768007 30768294 -71104875 + AluSx SINE Alu 1 289 -23 517 290 32 0 chr13 30768303 30768458 -71104711 - MIR SINE MIR 0 262 103 751 191 0 0 chr13 30769579 30769710 -71103459 + FLAM_A SINE Alu 1 131 -2 1028 245 98 0 chr13 30769729 30770076 -71103093 + L1ME3 LINE L1 5605 5985 -177 2875 154 55 98 chr13 30770095 30770860 -71102309 - L1MA9 LINE L1 -36 6276 5545 575 265 19 0 chr13 30770862 30771024 -71102145 + L1ME3 LINE L1 5972 6136 -26 2025 146 3 3 chr13 30771034 30771328 -71101841 - AluJb SINE Alu -18 294 1 607 269 66 16 chr13 30771345 30771537 -71101632 + MIR SINE MIR 64 262 0 451 209 12 22 chr13 30772473 30772623 -71100546 + MER3 DNA MER1_type 1 209 0 306 98 0 0 chr13 30772964 30773015 -71100154 + (TC)n Simple_repeat Simple_repeat 1 51 0 980 258 12 12 chr13 30774585 30774833 -71098336 + MIR SINE MIR 5 252 -10 250 270 96 70 chr13 30775169 30775284 -71097885 + L3 LINE CR1 949 1066 -511 1874 283 61 25 chr13 30775376 30775754 -71097415 - L2 LINE L2 -126 3187 2824 1747 259 77 16 chr13 30775754 30776310 -71096859 + MLT1G LTR MaLR 1 590 0 1874 283 61 25 chr13 30776310 30776827 -71096342 - L2 LINE L2 -489 2824 2253 262 324 99 9 chr13 30776822 30776933 -71096236 + L3 LINE CR1 1049 1169 -408 * 411 203 0 0 chr13 30777338 30777417 -71095752 + MLT1A2 LTR MaLR 296 374 0 372 293 124 102 chr13 30778954 30779660 -71093509 + L1M2 LINE L1 607 1332 -5517 372 43 0 0 chr13 30779660 30779706 -71093463 + (CGG)n Simple_repeat Simple_repeat 2 47 0 372 293 124 102 chr13 30779706 30779746 -71093423 + L1M2 LINE L1 1332 1370 -5479 31 0 0 0 chr13 30784524 30784555 -71088614 + AT_rich Low_complexity Low_complexity 1 31 0 2485 80 0 0 chr13 30784666 30784965 -71088204 + AluSg SINE Alu 1 299 -11 1865 144 3 56 chr13 30785135 30785455 -71087714 + AluJo SINE Alu 1 303 -9 2018 134 20 0 chr13 30785778 30786070 -71087099 + AluSx SINE Alu 1 298 -14 26 0 0 0 chr13 30786444 30786470 -71086699 + AT_rich Low_complexity Low_complexity 1 26 0 183 319 184 35 chr13 30786822 30786963 -71086206 + MIR SINE MIR 67 228 -34 281 291 94 26 chr13 30787044 30787161 -71086008 + L2 LINE L2 3139 3263 -9 21 36 0 0 chr13 30787373 30787401 -71085768 + AT_rich Low_complexity Low_complexity 1 28 0 735 308 124 28 chr13 30787499 30787960 -71085209 + MLT1K LTR MaLR 56 560 -28 181 302 81 12 chr13 30789744 30789830 -71083339 - L3 LINE CR1 -518 1059 968 180 336 149 25 chr13 30790095 30790330 -71082839 + L2 LINE L2 2714 2977 -337 378 241 214 9 chr13 30790366 30790478 -71082691 - MER5A DNA MER1_type 0 189 55 198 390 70 0 chr13 30790524 30790624 -71082545 + L2 LINE L2 3008 3114 -199 576 313 69 26 chr13 30790901 30791134 -71082035 + MIR SINE MIR 6 248 -14 23 33 0 0 chr13 30791608 30791638 -71081531 + AT_rich Low_complexity Low_complexity 1 30 0 195 129 0 0 chr13 30791690 30791721 -71081448 + (TA)n Simple_repeat Simple_repeat 1 31 0 780 262 73 13 chr13 30791816 30791878 -71081291 - L1ME LINE L1 -360 5879 5822 1018 257 157 13 chr13 30791878 30792325 -71080844 - MLT1J LTR MaLR 0 511 1 780 262 73 13 chr13 30792325 30792531 -71080638 - L1ME LINE L1 -417 5822 5599 439 264 90 30 chr13 30792798 30792999 -71080170 + MIR SINE MIR 1 213 -49 3072 203 33 37 chr13 30793215 30794101 -71079068 - L1ME2 LINE L1 -21 6143 5262 * 3936 250 50 31 chr13 30794094 30795748 -71077421 - L1ME LINE L1 -789 5426 3742 2238 129 32 45 chr13 30795988 30796368 -71076801 + THE1C LTR MaLR 1 375 0 244 57 0 0 chr13 30796552 30796587 -71076582 - Alu SINE Alu -160 141 107 1177 30 0 0 chr13 30796587 30796721 -71076448 + AluY SINE Alu 159 292 -19 311 292 149 10 chr13 30796804 30796999 -71076170 - L1ME LINE L1 -6077 319 98 500 213 83 30 chr13 30797623 30797859 -71075310 - MLT1H LTR MaLR 0 549 301 296 347 14 61 chr13 30798502 30798641 -71074528 - MIR3 SINE MIR -54 154 20 1547 101 0 10 chr13 30798641 30798872 -71074297 - AluSc SINE Alu 0 310 82 1799 129 0 15 chr13 30800618 30800889 -71072280 + AluSx SINE Alu 28 294 -18 24 0 0 0 chr13 30800969 30800993 -71072176 + AT_rich Low_complexity Low_complexity 1 24 0 1090 258 99 59 chr13 30801220 30802198 -71070971 - L1MEc LINE L1 -3216 2913 1942 493 296 107 19 chr13 30802354 30802833 -71070336 - L1MEc LINE L1 -4581 1729 1209 261 271 30 30 chr13 30802930 30802975 -71070194 - L1MEc LINE L1 -5091 1028 984 332 71 18 0 chr13 30802975 30803031 -71070138 + (TTG)n Simple_repeat Simple_repeat 2 58 0 261 271 30 30 chr13 30803031 30803118 -71070051 - L1MEc LINE L1 -5134 985 896 421 320 19 6 chr13 30804012 30804168 -71069001 - LTR16A1 LTR ERVL -299 158 1 1266 236 98 9 chr13 30804199 30804534 -71068635 + MLT1A1 LTR MaLR 1 365 0 2311 115 0 3 chr13 30804585 30804897 -71068272 - AluSx SINE Alu -1 311 1 1430 119 10 0 chr13 30804957 30805159 -71068010 - LTR12 LTR ERV1 -134 580 377 394 246 41 0 chr13 30805159 30805281 -71067888 - LTR30 LTR ERV1 -79 643 517 1102 78 131 89 chr13 30805281 30805472 -71067697 - LTR12 LTR ERV1 -463 251 53 271 211 0 0 chr13 30805472 30805524 -71067645 - LTR30 LTR ERV1 -670 52 1 458 85 0 0 chr13 30805526 30805585 -71067584 + LTR12 LTR ERV1 656 714 0 252 200 0 0 chr13 30805613 30805668 -71067501 + (CA)n Simple_repeat Simple_repeat 2 56 0 430 341 92 63 chr13 30806782 30807066 -71066103 - L2 LINE L2 0 3272 2981 * 551 338 61 20 chr13 30807049 30807345 -71065824 - L2 LINE L2 -842 2472 2165 2130 117 3 0 chr13 30807418 30807716 -71065453 + AluSx SINE Alu 3 301 -11 2131 103 3 45 chr13 30807727 30808037 -71065132 + AluSq SINE Alu 1 297 -16 253 390 150 4 chr13 30810163 30810409 -71062760 + L2 LINE L2 2987 3268 -4 302 283 0 11 chr13 30811144 30811236 -71061933 + (CA)n Simple_repeat Simple_repeat 2 92 0 311 0 26 0 chr13 30811253 30811292 -71061877 + (TC)n Simple_repeat Simple_repeat 1 40 0 285 75 0 0 chr13 30811291 30811331 -71061838 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 200 277 43 0 chr13 30812494 30812588 -71060581 + (TA)n Simple_repeat Simple_repeat 2 99 0 455 277 185 11 chr13 30813514 30813698 -71059471 - MIR SINE MIR -5 257 42 283 369 60 24 chr13 30813825 30813993 -71059176 + MER5A DNA MER1_type 10 183 -6 262 275 99 0 chr13 30814265 30814356 -71058813 + MARNA DNA Mariner 423 522 -64 24 0 0 0 chr13 30814359 30814383 -71058786 + AT_rich Low_complexity Low_complexity 1 24 0 2694 91 41 0 chr13 30815970 30816311 -71056858 + THE1A LTR MaLR 1 355 0 10199 95 96 1 chr13 30816311 30817754 -71055415 + THE1A-int LTR MaLR 1 1580 0 2755 105 6 0 chr13 30817754 30818107 -71055062 + THE1A LTR MaLR 1 355 0 2103 126 0 0 chr13 30818484 30818770 -71054399 + AluSx SINE Alu 1 286 -26 28 29 0 0 chr13 30818771 30818806 -71054363 + AT_rich Low_complexity Low_complexity 1 35 0 1772 156 0 48 chr13 30819875 30820189 -71052980 + AluJb SINE Alu 9 307 -5 2221 113 0 7 chr13 30820431 30820741 -71052428 + AluSc SINE Alu 1 308 -1 835 161 13 13 chr13 30821807 30822031 -71051138 + GA-rich Low_complexity Low_complexity 1 224 0 284 221 78 13 chr13 30822337 30822414 -71050755 + MLT1G1-int LTR MaLR 5 86 -1285 463 310 94 92 chr13 30823092 30823637 -71049532 + MLT1G1-int LTR MaLR 756 1301 -70 837 259 172 29 chr13 30823718 30824177 -71048992 + MLT1G1 LTR MaLR 20 595 0 360 265 111 39 chr13 30824323 30824504 -71048665 + L2 LINE L2 3104 3297 -16 439 214 11 0 chr13 30824682 30824771 -71048398 + MLT1I LTR MaLR 320 409 0 2801 169 24 2 chr13 30825209 30825666 -71047503 + MLT1C LTR MaLR 1 467 0 394 266 84 37 chr13 30826268 30826482 -71046687 - MARNA DNA Mariner -342 244 21 985 170 0 12 chr13 30826522 30826687 -71046482 - AluJb SINE Alu -13 299 137 256 294 79 40 chr13 30827350 30827476 -71045693 + L2 LINE L2 3141 3271 -1 642 183 19 0 chr13 30827973 30828077 -71045092 + FLAM_A SINE Alu 14 119 -23 689 209 58 17 chr13 30828686 30828858 -71044311 + LTR41 LTR ERVL 1 179 -594 471 208 14 111 chr13 30829090 30829258 -71043911 + LTR41 LTR ERVL 581 727 -46 2289 129 23 12 chr13 30829258 30829600 -71043569 - MER7A DNA MER2_type -1 345 2 471 208 14 111 chr13 30829600 30829638 -71043531 + LTR41 LTR ERVL 727 767 -6 1905 112 11 0 chr13 30829661 30829921 -71043248 - AluSx SINE Alu -1 311 49 2168 112 0 13 chr13 30831998 30832303 -71040866 + AluSx SINE Alu 1 301 -11 334 255 104 19 chr13 30833745 30833851 -71039318 + L2 LINE L2 3153 3267 -5 27 29 0 0 chr13 30834043 30834077 -71039092 + AT_rich Low_complexity Low_complexity 1 34 0 1692 114 9 0 chr13 30834453 30834680 -71038489 - MER30 DNA MER1_type 0 230 2 2265 104 3 3 chr13 30835075 30835382 -71037787 - AluSq SINE Alu -4 309 3 213 39 0 0 chr13 30836957 30836983 -71036186 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1736 221 6 14 chr13 30837451 30837813 -71035356 - L1PB4 LINE L1 -1 6155 5797 331 364 30 20 chr13 30838159 30838357 -71034812 - L2 LINE L2 -243 3029 2830 196 329 40 26 chr13 30838992 30839068 -71034101 + L3b LINE CR1 1420 1496 -87 1277 261 67 8 chr13 30839853 30840244 -71032925 + MLT1C LTR MaLR 54 467 0 2282 98 0 0 chr13 30840496 30840791 -71032378 - AluSx SINE Alu -17 295 1 236 120 20 0 chr13 30841511 30841561 -71031608 + CT-rich Low_complexity Low_complexity 1 51 0 655 248 218 5 chr13 30842844 30843046 -71030123 + MIR SINE MIR 18 262 0 560 316 50 31 chr13 30843262 30843738 -71029431 - L2 LINE L2 -144 3169 2686 1193 230 139 91 chr13 30843743 30844260 -71028909 + MLT1E LTR MaLR 1 542 0 944 291 124 42 chr13 30844260 30844734 -71028435 - L2 LINE L2 -627 2687 2175 821 237 101 18 chr13 30844735 30845169 -71028000 - MLT1G LTR MaLR 0 590 1 1025 298 37 16 chr13 30845171 30845547 -71027622 - L2 LINE L2 -1138 2176 1793 289 322 268 23 chr13 30845611 30845965 -71027204 - L3 LINE CR1 -83 1494 1054 246 32 0 0 chr13 30846735 30846766 -71026403 + (CA)n Simple_repeat Simple_repeat 1 31 0 385 251 69 44 chr13 30847259 30847462 -71025707 + MIR SINE MIR 5 212 -50 505 245 93 65 chr13 30847611 30847933 -71025236 + HAL1 LINE L1 1122 1452 -1055 358 328 74 0 chr13 30848507 30848629 -71024540 + L2 LINE L2 3123 3253 -19 537 223 128 95 chr13 30848705 30848978 -71024191 - MER102b DNA MER1_type -1 340 59 474 221 31 72 chr13 30849571 30849766 -71023403 + HAL1b LINE L1 593 779 -569 21 0 0 0 chr13 30850005 30850026 -71023143 + AT_rich Low_complexity Low_complexity 1 21 0 544 250 12 6 chr13 30850065 30850225 -71022944 + HAL1b LINE L1 1181 1341 -7 1735 142 19 68 chr13 30850374 30850685 -71022484 - AluJo SINE Alu -14 298 3 252 365 79 8 chr13 30851753 30851879 -71021290 + L2 LINE L2 3138 3272 0 465 273 41 17 chr13 30852048 30852383 -71020786 - MLT1L LTR MaLR -31 584 149 313 274 64 129 chr13 30852470 30852942 -71020227 + L2 LINE L2 2786 3227 -45 326 250 0 0 chr13 30853237 30853301 -71019868 - MER81 DNA DNA -36 78 15 828 189 26 37 chr13 30854356 30854546 -71018623 + MIR SINE MIR 31 218 -44 2201 106 0 17 chr13 30854656 30854957 -71018212 + AluSq SINE Alu 1 296 -17 210 357 124 0 chr13 30855231 30855360 -71017809 - L2 LINE L2 -189 3083 2939 501 245 61 74 chr13 30856205 30856667 -71016502 + L1MC5 LINE L1 7452 7907 -54 1824 172 0 22 chr13 30856689 30857003 -71016166 - AluJb SINE Alu -5 307 1 450 0 0 0 chr13 30857768 30857818 -71015351 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 414 0 0 0 chr13 30857817 30857863 -71015306 + (TG)n Simple_repeat Simple_repeat 1 46 0 * 411 306 201 10 chr13 30857961 30858170 -71014999 - MIR SINE MIR -2 260 12 231 250 111 0 chr13 30858302 30858410 -71014759 + L1ME4a LINE L1 6002 6121 0 469 192 128 32 chr13 30859995 30860120 -71013049 + MIR SINE MIR 124 260 -2 339 96 0 0 chr13 30860439 30860491 -71012678 + (CA)n Simple_repeat Simple_repeat 1 52 0 629 287 89 40 chr13 30860666 30861143 -71012026 - L1ME4a LINE L1 -113 6008 5486 2383 93 0 0 chr13 30861143 30861444 -71011725 - AluY SINE Alu -10 301 1 629 287 89 40 chr13 30861444 30861622 -71011547 - L1ME4a LINE L1 -635 5486 5318 2108 132 48 25 chr13 30861677 30862033 -71011136 + THE1B LTR MaLR 1 364 0 11417 93 14 21 chr13 30862033 30863623 -71009546 + THE1B-int LTR MaLR 1 1580 0 2257 121 25 25 chr13 30863623 30863987 -71009182 + THE1B LTR MaLR 1 364 0 273 146 0 0 chr13 30864785 30864833 -71008336 + MLT1F LTR MaLR 2 49 -518 1254 182 121 67 chr13 30864853 30865199 -71007970 - MLT1A1 LTR MaLR 0 365 1 916 227 203 10 chr13 30865204 30865495 -71007674 + MLT1F LTR MaLR 136 482 -60 367 335 77 14 chr13 30865604 30865825 -71007344 + MLT1L LTR MaLR 252 486 -129 1784 235 94 31 chr13 30866574 30867023 -71006146 + L1ME3A LINE L1 5445 5864 -306 452 16 0 32 chr13 30867023 30867085 -71006084 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 1760 165 3 21 chr13 30867088 30867379 -71005790 - AluJb SINE Alu -26 286 1 1784 235 94 31 chr13 30867379 30867602 -71005567 + L1ME3A LINE L1 5865 6164 -6 74 12 0 0 chr13 30867632 30867713 -71005456 + AT_rich Low_complexity Low_complexity 1 81 0 435 292 55 32 chr13 30870467 30870665 -71002504 + MIR SINE MIR 1 213 -49 770 284 126 31 chr13 30871158 30871546 -71001623 + L2 LINE L2 2858 3282 -31 2254 232 24 27 chr13 30871820 30872497 -71000672 - L1ME2 LINE L1 -2 6162 5488 2181 130 20 66 chr13 30872775 30873184 -70999985 + MLT1B LTR MaLR 1 390 0 719 301 46 27 chr13 30873552 30874034 -70999135 + L1ME4a LINE L1 5630 6120 -1 21 57 0 0 chr13 30874037 30874072 -70999097 + AT_rich Low_complexity Low_complexity 1 35 0 2589 133 84 80 chr13 30874552 30875065 -70998104 - MLT2B2 LTR ERVL 0 515 1 4218 121 16 14 chr13 30875134 30875829 -70997340 + MER50 LTR ERV1 2 697 -37 658 245 90 138 chr13 30876069 30876648 -70996521 + MLT1G3 LTR MaLR 3 553 -42 27 29 0 0 chr13 30876898 30876932 -70996237 + AT_rich Low_complexity Low_complexity 1 34 0 222 204 0 0 chr13 30877448 30877492 -70995677 + L2 LINE L2 3270 3313 0 342 341 103 1 chr13 30877513 30877673 -70995496 + MIR3 SINE MIR 18 194 -14 * 421 279 49 16 chr13 30877669 30877791 -70995378 + L2 LINE L2 3146 3271 -1 769 177 0 8 chr13 30880265 30880395 -70992774 + FLAM_C SINE Alu 1 129 -4 181 385 36 12 chr13 30880426 30880509 -70992660 + L2 LINE L2 3127 3211 -61 187 364 185 0 chr13 30880726 30880877 -70992292 + MIR SINE MIR 2 180 -82 1335 259 124 19 chr13 30880879 30881361 -70991808 + MLT2E LTR ERVL 1 533 -95 406 272 88 7 chr13 30881394 30881541 -70991628 + MER63A DNA MER1_type 51 209 -1 191 255 0 0 chr13 30881637 30881684 -70991485 + MIR SINE MIR 215 261 -1 31064 23 0 0 chr13 30882472 30887109 -70986060 + L1PA2 LINE L1 1517 6154 -1 245 295 38 19 chr13 30887975 30888080 -70985089 - L2 LINE L2 -511 2803 2697 214 211 0 0 chr13 30888357 30888395 -70984774 - L2 LINE L2 -954 2360 2323 466 355 94 41 chr13 30888443 30889538 -70983631 + L2 LINE L2 2026 3272 0 198 0 0 0 chr13 30890823 30890845 -70982324 + (CA)n Simple_repeat Simple_repeat 2 23 0 207 0 0 0 chr13 30890845 30890868 -70982301 + (TA)n Simple_repeat Simple_repeat 1 23 0 189 339 96 71 chr13 30892568 30892807 -70980362 - L2 LINE L2 -7 3265 3021 196 306 35 12 chr13 30892829 30892914 -70980255 - L2 LINE L2 0 3272 3186 695 284 99 34 chr13 30893115 30894091 -70979078 - L1M4 LINE L1 -758 5388 4349 270 306 106 4 chr13 30894095 30894370 -70978799 - L1MEd LINE L1 -3623 2506 2204 505 244 87 35 chr13 30894512 30894741 -70978428 - MLT1L LTR MaLR -5 610 370 320 202 0 43 chr13 30895163 30895257 -70977912 - L1MC4 LINE L1 -1339 6703 6614 254 182 0 0 chr13 30895203 30895269 -70977900 + L1MC4 LINE L1 6636 6701 -1341 * 333 0 0 0 chr13 30895269 30895306 -70977863 + (GA)n Simple_repeat Simple_repeat 2 38 0 2186 102 46 0 chr13 30895814 30896099 -70977070 + AluSq SINE Alu 1 298 -15 213 65 0 0 chr13 30896115 30896146 -70977023 + (CATA)n Simple_repeat Simple_repeat 2 32 0 240 286 62 49 chr13 30896148 30896372 -70976797 - HAL1 LINE L1 -898 1609 1383 255 319 37 22 chr13 30896434 30896569 -70976600 - L1MEd LINE L1 -5503 616 480 557 311 145 20 chr13 30897424 30898284 -70974885 + L1MC4a LINE L1 4903 5724 -397 282 299 0 0 chr13 30898349 30898416 -70974753 + (TG)n Simple_repeat Simple_repeat 2 68 0 30 45 0 0 chr13 30898529 30898573 -70974596 + AT_rich Low_complexity Low_complexity 1 44 0 187 333 13 27 chr13 30898853 30898928 -70974241 + L2 LINE L2 2937 3010 -262 286 228 81 40 chr13 30899496 30899645 -70973524 + MER103 DNA DNA 3 157 -9 2817 128 24 13 chr13 30899649 30900111 -70973058 - MLT1C LTR MaLR 0 467 1 205 254 228 9 chr13 30900264 30900378 -70972791 - MIR SINE MIR -88 174 36 182 322 115 23 chr13 30902579 30902666 -70970503 + L2 LINE L2 3211 3305 -8 2564 128 61 10 chr13 30902861 30903268 -70969901 + MSTA LTR MaLR 1 428 0 926 234 99 13 chr13 30904570 30904813 -70968356 - MIR SINE MIR -13 249 3 561 214 22 72 chr13 30905804 30906000 -70967169 + MIR SINE MIR 3 190 -62 334 253 243 13 chr13 30906336 30906534 -70966635 - MIR SINE MIR 0 262 3 260 385 32 6 chr13 30907574 30907730 -70965439 + MIR SINE MIR 23 182 -80 810 177 15 8 chr13 30907839 30907969 -70965200 + FRAM SINE Alu 1 131 -45 533 210 133 0 chr13 30908413 30908556 -70964613 - MER117 DNA MER1_type 0 197 36 555 301 57 16 chr13 30909210 30909403 -70963766 - MIR SINE MIR -54 208 8 319 288 253 11 chr13 30909714 30909999 -70963170 + L2 LINE L2 2489 2842 -472 304 357 13 6 chr13 30910001 30910158 -70963011 + L2 LINE L2 3156 3313 0 269 376 40 8 chr13 30910373 30910498 -70962671 - L2 LINE L2 0 3272 3144 292 302 107 62 chr13 30910773 30910998 -70962171 - L2 LINE L2 -474 2840 2606 262 274 94 66 chr13 30912701 30912913 -70960256 + MIR SINE MIR 32 249 -13 285 372 44 7 chr13 30913277 30913414 -70959755 + L2 LINE L2 3113 3254 -18 22 56 0 0 chr13 30913721 30913757 -70959412 + AT_rich Low_complexity Low_complexity 1 36 0 371 234 47 104 chr13 30913929 30913977 -70959192 - MIR SINE MIR -19 243 194 1412 208 102 47 chr13 30913977 30914361 -70958808 + MLT1I LTR MaLR 3 407 -2 371 234 47 104 chr13 30914361 30914411 -70958758 - MIR SINE MIR -68 194 143 1523 249 92 9 chr13 30914411 30914836 -70958333 + LTR40b LTR ERVL 3 462 0 371 234 47 104 chr13 30914836 30914928 -70958241 - MIR SINE MIR -119 143 63 216 175 0 0 chr13 30914982 30915022 -70958147 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 582 259 60 50 chr13 30915505 30915706 -70957463 + MIR SINE MIR 47 249 -13 182 250 107 36 chr13 30915943 30916027 -70957142 - L2 LINE L2 -25 3288 3199 284 343 10 0 chr13 30916400 30916502 -70956667 - L2 LINE L2 -584 2730 2628 2128 146 0 0 chr13 30916519 30916820 -70956349 + AluSx SINE Alu 1 301 -11 701 228 118 29 chr13 30917517 30917763 -70955406 + L1ME4a LINE L1 5560 5827 -294 288 234 105 24 chr13 30917845 30917969 -70955200 + L1ME4a LINE L1 5810 5943 -178 548 307 62 33 chr13 30918110 30918348 -70954821 - MIR SINE MIR -2 260 9 582 267 19 19 chr13 30918811 30918972 -70954197 + MIR3 SINE MIR 48 208 0 646 252 130 17 chr13 30920032 30920262 -70952907 - MIR SINE MIR -6 256 1 252 184 0 0 chr13 30920291 30920340 -70952829 + (TG)n Simple_repeat Simple_repeat 2 50 0 457 232 0 11 chr13 30920926 30921021 -70952148 + MER94 DNA DNA 1 94 -40 1691 167 29 0 chr13 30921025 30921173 -70951996 - AluJb SINE Alu -29 283 122 225 0 0 0 chr13 30921173 30921198 -70951971 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1691 167 29 0 chr13 30921198 30921324 -70951845 - AluJb SINE Alu -190 122 1 2498 179 65 70 chr13 30922965 30923580 -70949589 + LTR9 LTR ERV1 1 612 0 1798 146 0 57 chr13 30923766 30924081 -70949088 + AluSx SINE Alu 1 297 -15 226 237 0 66 chr13 30924670 30924746 -70948423 + LTR33A LTR ERVL 420 490 -33 866 261 105 17 chr13 30924751 30925046 -70948123 + MLT1J2 LTR MaLR 9 329 -121 847 160 0 20 chr13 30925420 30925570 -70947599 + L1MA9 LINE L1 6166 6312 0 525 307 40 36 chr13 30926824 30927049 -70946120 - MIR SINE MIR -31 231 6 1205 250 11 11 chr13 30927376 30927656 -70945513 + L1ME1 LINE L1 5877 6156 -10 28 0 0 0 chr13 30928700 30928728 -70944441 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr13 30932567 30932598 -70940571 + AT_rich Low_complexity Low_complexity 1 31 0 294 276 20 0 chr13 30933021 30933119 -70940050 + (CTA)n Simple_repeat Simple_repeat 1 100 0 431 250 118 0 chr13 30933897 30934049 -70939120 + MIR SINE MIR 37 206 -56 283 232 37 12 chr13 30934148 30934230 -70938939 + L2 LINE L2 3230 3313 0 240 383 35 14 chr13 30935690 30935831 -70937338 + MIR3 SINE MIR 35 178 -30 410 248 53 30 chr13 30936615 30936748 -70936421 - MIR SINE MIR -9 253 118 205 213 21 0 chr13 30937050 30937097 -70936072 + GA-rich Low_complexity Low_complexity 4 51 0 4791 134 15 9 chr13 30939174 30939929 -70933240 - L1PA13 LINE L1 -19 6144 5386 966 186 48 11 chr13 30940035 30940223 -70932946 - MER20 DNA MER1_type -4 215 21 1303 235 68 9 chr13 30941074 30941398 -70931771 + MER2 DNA MER2_type 1 343 -1 2067 162 26 3 chr13 30942151 30942491 -70930678 + MER7A DNA MER2_type 1 346 0 389 113 99 28 chr13 30942553 30942624 -70930545 + MER20 DNA MER1_type 67 142 -77 417 306 163 6 chr13 30943090 30943250 -70929919 + MIR SINE MIR 30 214 -48 350 298 8 68 chr13 30943842 30944031 -70929138 + MIR3 SINE MIR 1 183 -59 2010 130 7 10 chr13 30945171 30945479 -70927690 + L1MA2 LINE L1 5996 6302 -2 277 325 7 33 chr13 30945563 30945714 -70927455 + GA-rich Low_complexity Low_complexity 4 150 0 287 317 24 21 chr13 30945768 30945976 -70927193 + GA-rich Low_complexity Low_complexity 1 208 0 2596 43 10 0 chr13 30946715 30947018 -70926151 - AluY SINE Alu -5 306 1 442 265 241 0 chr13 30947083 30947253 -70925916 + MIR SINE MIR 41 251 -11 209 260 221 0 chr13 30949029 30949106 -70924063 - L2 LINE L2 -9 3263 3170 231 200 40 20 chr13 30949128 30949178 -70923991 + L1PBa LINE L1 625 675 -6188 470 269 67 52 chr13 30950063 30950196 -70922973 + MIR SINE MIR 57 195 -67 2384 100 0 0 chr13 30950196 30950506 -70922663 + AluSg SINE Alu 1 310 0 470 269 67 52 chr13 30950506 30950565 -70922604 + MIR SINE MIR 195 252 -10 383 275 90 60 chr13 30951351 30951518 -70921651 + MER5B DNA MER1_type 6 177 -1 189 226 0 0 chr13 30951783 30951836 -70921333 + (CTGGGG)n Simple_repeat Simple_repeat 3 55 0 184 212 30 106 chr13 30952956 30952969 -70920200 + MIR SINE MIR 58 70 -138 1804 178 7 0 chr13 30952969 30953273 -70919896 + AluJb SINE Alu 1 306 -6 184 212 30 106 chr13 30953273 30953325 -70919844 + MIR SINE MIR 70 118 -90 293 330 85 0 chr13 30955142 30955236 -70917933 + L2 LINE L2 3158 3259 -13 1333 224 76 14 chr13 30956463 30956807 -70916362 + MLT1A1 LTR MaLR 1 365 0 1608 163 42 10 chr13 30956977 30957290 -70915879 + MER33 DNA MER1_type 1 323 -1 568 304 33 49 chr13 30957619 30957862 -70915307 + MER102b DNA MER1_type 103 341 0 803 180 60 7 chr13 30958300 30958450 -70914719 - MER45A DNA AcHobo -19 159 2 374 152 0 13 chr13 30959043 30959122 -70914047 + (TG)n Simple_repeat Simple_repeat 1 78 0 3308 278 72 26 chr13 30959213 30960352 -70912817 - L2 LINE L2 -1 3312 2227 1562 179 3 41 chr13 30960352 30960642 -70912527 + AluJo SINE Alu 1 279 -33 396 0 0 0 chr13 30960642 30960686 -70912483 + (CA)n Simple_repeat Simple_repeat 1 44 0 3308 278 72 26 chr13 30960686 30961035 -70912134 - L2 LINE L2 -1085 2228 1759 1271 166 38 76 chr13 30961975 30962289 -70910880 - MER33 DNA MER1_type -22 302 1 228 301 19 19 chr13 30962679 30962782 -70910387 - L2 LINE L2 -484 2830 2728 334 260 39 0 chr13 30962811 30962915 -70910254 - MIR3 SINE MIR -50 158 51 21 36 0 0 chr13 30963329 30963357 -70909812 + AT_rich Low_complexity Low_complexity 1 28 0 352 316 34 17 chr13 30963876 30963993 -70909176 - L2 LINE L2 -12 3260 3142 2017 185 52 79 chr13 30963993 30964512 -70908657 - MLT1D LTR MaLR 0 505 1 656 242 37 64 chr13 30965976 30966273 -70906896 + L1ME3A LINE L1 5876 6164 -6 2134 117 0 0 chr13 30966274 30966600 -70906569 + AluSg SINE Alu 1 326 0 2313 99 3 19 chr13 30966703 30967017 -70906152 + AluSx SINE Alu 1 309 -3 2025 169 107 26 chr13 30967212 30967631 -70905538 + MLT2C2 LTR ERVL 1 453 -11 194 236 69 42 chr13 30969309 30969381 -70903788 - MIR SINE MIR -79 183 110 2186 119 0 0 chr13 30969500 30969794 -70903375 + AluSx SINE Alu 1 294 -18 245 271 59 12 chr13 30970624 30970709 -70902460 - L2 LINE L2 -18 3254 3166 1528 184 32 23 chr13 30971944 30972253 -70900916 + AluJo SINE Alu 1 312 0 192 40 0 0 chr13 30972263 30972288 -70900881 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 762 345 72 17 chr13 30972551 30973012 -70900157 + L2 LINE L2 2392 2877 -437 547 204 15 83 chr13 30973046 30973178 -70899991 - L2 LINE L2 -2 3311 3189 601 285 26 0 chr13 30973193 30973344 -70899825 + L2 LINE L2 3158 3312 -1 2403 42 0 7 chr13 30973989 30974298 -70898871 + AluY SINE Alu 1 307 0 183 85 64 0 chr13 30975499 30975546 -70897623 + (TA)n Simple_repeat Simple_repeat 2 51 0 688 299 108 0 chr13 30975733 30975964 -70897205 - MIR SINE MIR 0 262 7 180 0 0 0 chr13 30976868 30976888 -70896281 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1566 270 67 57 chr13 30976888 30977751 -70895418 - L2 LINE L2 -13 3300 2435 2419 80 3 0 chr13 30977773 30978072 -70895097 + AluSp SINE Alu 13 312 -1 267 348 54 0 chr13 30979026 30979138 -70894031 + MIR SINE MIR 28 145 -63 276 324 0 0 chr13 30979300 30979371 -70893798 + MIR SINE MIR 84 154 -108 327 215 295 20 chr13 30980037 30980186 -70892983 + MIR SINE MIR 1 190 -72 216 220 187 22 chr13 30980259 30980294 -70892875 - MIR SINE MIR -66 196 168 2646 123 5 14 chr13 30980294 30980661 -70892508 - THE1B LTR MaLR 0 364 1 216 220 187 22 chr13 30980661 30980716 -70892453 - MIR SINE MIR -94 168 91 321 206 192 0 chr13 30980896 30980969 -70892200 - MIR3 SINE MIR -37 171 85 382 295 67 99 chr13 30981082 30981394 -70891775 - L2 LINE L2 -85 3187 2886 934 298 159 12 chr13 30981642 30982138 -70891031 + L3 LINE CR1 414 982 -595 720 320 201 20 chr13 30982701 30983189 -70889980 + L3 LINE CR1 989 1564 -13 475 292 91 8 chr13 30983347 30983590 -70889579 - L3b LINE CR1 -142 1441 1179 268 210 99 49 chr13 30983841 30983922 -70889247 + MER103 DNA DNA 69 153 -13 259 283 158 13 chr13 30984238 30984390 -70888779 - MIR3 SINE MIR -19 189 16 186 311 165 29 chr13 30984449 30984552 -70888617 + MER5A DNA MER1_type 71 187 -2 218 277 148 0 chr13 30984633 30984734 -70888435 + MIR3 SINE MIR 92 207 -1 325 273 173 32 chr13 30984871 30985091 -70888078 - MIR SINE MIR -10 252 2 191 238 32 48 chr13 30985143 30985206 -70887963 + L2 LINE L2 3242 3303 -10 295 401 94 10 chr13 30987334 30987536 -70885633 - L2 LINE L2 0 3272 3054 492 309 0 14 chr13 30987611 30987750 -70885419 + MER5B DNA MER1_type 2 138 -40 868 315 87 39 chr13 30990639 30991759 -70881410 + L1ME LINE L1 4525 5716 -454 722 289 98 26 chr13 30991804 30992298 -70880871 + L1ME3A LINE L1 3169 3695 -2451 2151 97 4 0 chr13 30992298 30992577 -70880592 + AluSg SINE Alu 17 296 -14 997 283 42 30 chr13 30992577 30993071 -70880098 + L1ME3A LINE L1 4267 4766 -1380 459 200 79 55 chr13 30993077 30993242 -70879927 - MER69A DNA AcHobo 0 177 9 1718 286 65 29 chr13 30993270 30993583 -70879586 + L1ME3A LINE L1 4785 5085 -1085 774 172 28 7 chr13 30993583 30993728 -70879441 + L1PA16 LINE L1 6010 6157 -9 1718 286 65 29 chr13 30993728 30993866 -70879303 + L1ME3A LINE L1 5085 5217 -953 559 214 54 12 chr13 30993866 30994034 -70879135 + MER104 DNA MER2_type 4 178 -2 1718 286 65 29 chr13 30994034 30994699 -70878470 + L1ME3A LINE L1 5217 5951 -219 21 71 0 0 chr13 30995147 30995189 -70877980 + AT_rich Low_complexity Low_complexity 1 42 0 373 323 8 8 chr13 30995564 30995691 -70877478 - L2 LINE L2 -23 3290 3164 2802 105 6 0 chr13 30996207 30996568 -70876601 + THE1B LTR MaLR 1 363 -1 296 273 73 18 chr13 30996666 30996776 -70876393 - L2 LINE L2 0 3313 3198 335 252 92 0 chr13 30996907 30997038 -70876131 + HAL1 LINE L1 2005 2147 -360 1979 113 0 45 chr13 30997211 30997521 -70875648 + AluSx SINE Alu 1 296 -16 2453 168 2 57 chr13 30997636 30998095 -70875074 - Tigger2a DNA MER2_type 0 434 1 1719 180 0 0 chr13 30999702 30999969 -70873200 + Tigger7 DNA MER2_type 1 267 -466 587 186 10 0 chr13 30999967 31000064 -70873105 + Tigger7 DNA MER2_type 2389 2486 -1 * 250 231 0 0 chr13 31000581 31000633 -70872536 + L2 LINE L2 3262 3313 0 783 257 77 18 chr13 31000744 31000966 -70872203 - MIR SINE MIR -26 236 2 21 0 0 0 chr13 31001765 31001786 -70871383 + AT_rich Low_complexity Low_complexity 1 21 0 1946 142 3 24 chr13 31002342 31002637 -70870532 - AluJo SINE Alu -15 297 9 192 125 0 0 chr13 31002743 31002775 -70870394 + (CAT)n Simple_repeat Simple_repeat 1 32 0 336 292 169 19 chr13 31002813 31002967 -70870202 - MIR SINE MIR -58 204 28 696 196 127 0 chr13 31003143 31003304 -70869865 - MER5A DNA MER1_type 0 189 4 25 0 0 0 chr13 31003897 31003922 -70869247 + AT_rich Low_complexity Low_complexity 1 25 0 232 289 72 58 chr13 31006607 31006901 -70866268 - L2 LINE L2 -10 3303 2924 2075 113 23 0 chr13 31007685 31007987 -70865182 + AluSc SINE Alu 1 309 0 203 61 30 0 chr13 31008675 31008708 -70864461 + (CA)n Simple_repeat Simple_repeat 2 35 0 1303 199 0 15 chr13 31009756 31010027 -70863142 + AluJo SINE Alu 40 306 -6 1419 81 4 136 chr13 31011857 31011935 -70861234 - L1PB2 LINE L1 -2 6149 6062 2033 121 24 0 chr13 31011935 31012233 -70860936 - AluSc SINE Alu -4 305 1 1419 81 4 136 chr13 31012233 31012427 -70860742 - L1PB2 LINE L1 -89 6062 5913 227 308 143 33 chr13 31013078 31013169 -70860000 - L2 LINE L2 -19 3253 3153 288 346 13 44 chr13 31013204 31013363 -70859806 - L2 LINE L2 -452 2862 2709 354 336 159 28 chr13 31013381 31013664 -70859505 + L1ME LINE L1 5382 5701 -420 690 210 61 33 chr13 31014241 31014422 -70858747 + MER53 DNA DNA 4 189 0 265 291 225 35 chr13 31014765 31014884 -70858285 - L2 LINE L2 -455 2859 2764 405 0 0 0 chr13 31014884 31014929 -70858240 + (TG)n Simple_repeat Simple_repeat 2 46 0 265 291 225 35 chr13 31014929 31015067 -70858102 - L2 LINE L2 -550 2764 2553 186 227 0 0 chr13 31015074 31015118 -70858051 + GA-rich Low_complexity Low_complexity 5 48 0 214 301 114 41 chr13 31016312 31016435 -70856734 - MIR SINE MIR -120 142 11 283 266 138 11 chr13 31017551 31017645 -70855524 + L2 LINE L2 3208 3313 0 279 0 0 0 chr13 31019326 31019357 -70853812 + (CA)n Simple_repeat Simple_repeat 2 32 0 2683 169 40 16 chr13 31019520 31020143 -70853026 + L1MA9 LINE L1 5558 6291 -21 449 285 32 65 chr13 31020251 31020437 -70852732 - MER91A DNA MER1_type 0 196 17 484 179 116 45 chr13 31020742 31020854 -70852315 + AluJo SINE Alu 1 120 -192 6686 131 16 9 chr13 31020855 31022145 -70851024 + HERVH LTR ERV1 3685 4910 -2287 1569 138 35 0 chr13 31022145 31022406 -70850763 + HERVH LTR ERV1 5747 6016 -1697 * 3641 116 14 9 chr13 31022399 31022953 -70850216 + HERVH LTR ERV1 7157 7713 0 1174 171 88 107 chr13 31022953 31023410 -70849759 + LTR7 LTR ERV1 1 448 -2 1172 151 5 19 chr13 31023412 31023617 -70849552 + AluJo SINE Alu 103 304 -8 300 322 51 0 chr13 31023858 31023976 -70849193 + MIR3 SINE MIR 50 173 -35 536 328 109 13 chr13 31025946 31026184 -70846985 - MIR SINE MIR 0 262 2 5151 74 1 1 chr13 31026255 31026918 -70846251 - L1PA8 LINE L1 -1 6171 5509 736 263 96 5 chr13 31026922 31027120 -70846049 - MIR SINE MIR -36 226 11 4497 134 14 21 chr13 31027326 31028037 -70845132 + MER50 LTR ERV1 1 706 -28 1083 258 75 95 chr13 31028103 31028300 -70844869 - MER21B LTR ERV1 -169 694 495 1824 164 0 0 chr13 31028300 31028599 -70844570 - AluSx SINE Alu -13 299 1 1083 258 75 95 chr13 31028599 31029010 -70844159 - MER21B LTR ERV1 -368 495 98 318 271 8 85 chr13 31028983 31029112 -70844057 - MER77 LTR ERV1 -408 197 79 * 203 293 0 81 chr13 31029479 31029578 -70843591 - MIR3 SINE MIR -8 200 110 305 232 0 0 chr13 31029700 31029756 -70843413 + MIR SINE MIR 92 147 -61 279 233 0 0 chr13 31030298 31030358 -70842811 + MER91 DNA MER1_type 81 140 0 271 293 52 9 chr13 31031168 31031284 -70841885 + MIR SINE MIR 18 138 -70 2110 74 3 11 chr13 31031765 31032077 -70841092 - AluSg1 SINE Alu 0 310 1 188 260 68 14 chr13 31032558 31032631 -70840538 + MER5A DNA MER1_type 11 87 -102 206 250 50 0 chr13 31032756 31032816 -70840353 + MER5A DNA MER1_type 33 95 -94 399 246 52 77 chr13 31033806 31034010 -70839159 - MIR3 SINE MIR -57 205 10 4057 102 27 0 chr13 31034036 31034627 -70838542 - L1MA2 LINE L1 0 6304 5698 181 325 63 40 chr13 31034627 31034753 -70838416 + L2 LINE L2 1775 1903 -1411 2115 188 30 26 chr13 31034757 31035220 -70837949 + MLT1C LTR MaLR 1 465 -2 1166 334 115 18 chr13 31035220 31036049 -70837120 + L2 LINE L2 1901 2809 -505 484 322 40 0 chr13 31036069 31036221 -70836948 + MIR SINE MIR 91 248 -14 213 235 0 0 chr13 31036224 31036275 -70836894 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1377 202 30 4 chr13 31036380 31036642 -70836527 + THE1A LTR MaLR 1 269 -86 293 328 66 97 chr13 31036743 31037002 -70836167 + L2 LINE L2 3022 3272 0 864 328 64 48 chr13 31037625 31038144 -70835025 + L3 LINE CR1 735 1261 -316 566 179 132 0 chr13 31038188 31038294 -70834875 - FLAM_A SINE Alu -13 120 1 324 360 58 0 chr13 31038674 31038813 -70834356 + L3 LINE CR1 1372 1518 -59 496 315 28 6 chr13 31038824 31039002 -70834167 - MER5A DNA MER1_type -7 182 1 309 253 77 0 chr13 31039473 31039564 -70833605 + MER20B DNA MER1_type 44 141 -642 211 209 0 0 chr13 31040808 31040851 -70832318 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 292 284 114 0 chr13 31040947 31041035 -70832134 - MIR SINE MIR -131 131 34 846 252 59 28 chr13 31041457 31041711 -70831458 - MIR SINE MIR 0 262 1 199 292 77 15 chr13 31041721 31041786 -70831383 + MIR SINE MIR 32 100 -108 * 288 278 127 16 chr13 31041779 31041905 -70831264 - L2 LINE L2 -217 3055 2916 1671 169 13 23 chr13 31042074 31042382 -70830787 + AluJo SINE Alu 2 306 -6 3269 168 16 5 chr13 31043501 31044056 -70829113 - MER68 LTR ERV1 -1 561 1 345 47 0 0 chr13 31044337 31044380 -70828789 + (TTG)n Simple_repeat Simple_repeat 3 45 0 265 254 27 45 chr13 31044430 31044540 -70828629 + LTR16C LTR ERVL 350 457 -34 1692 195 0 3 chr13 31044547 31044860 -70828309 - AluJo SINE Alu 0 312 1 180 325 182 39 chr13 31045048 31045251 -70827918 - L2 LINE L2 0 3313 3082 202 246 140 79 chr13 31045342 31045456 -70827713 - L2 LINE L2 -1045 2269 2149 261 241 111 46 chr13 31045716 31045824 -70827345 - MIR3 SINE MIR -6 202 88 471 315 0 82 chr13 31045831 31045982 -70827187 + L2 LINE L2 3104 3240 -32 1819 123 25 0 chr13 31045982 31046284 -70826885 - AluSx SINE Alu 0 309 1 471 315 0 82 chr13 31046284 31046315 -70826854 + L2 LINE L2 3240 3272 0 22 0 0 0 chr13 31050473 31050495 -70822674 + AT_rich Low_complexity Low_complexity 1 22 0 1342 165 84 40 chr13 31051027 31051348 -70821821 + MER2 DNA MER2_type 1 335 -10 408 331 172 8 chr13 31051973 31052333 -70820836 + L2 LINE L2 1932 2350 -964 377 310 18 127 chr13 31052385 31052669 -70820500 - L2 LINE L2 -40 3232 2980 1639 126 4 0 chr13 31052873 31053119 -70820050 + AluSp SINE Alu 57 303 -10 201 229 0 0 chr13 31053250 31053298 -70819871 + CT-rich Low_complexity Low_complexity 2 49 0 341 231 12 17 chr13 31053498 31053638 -70819531 + GA-rich Low_complexity Low_complexity 1 140 -814 1838 181 69 82 chr13 31053638 31053941 -70819228 - MLT1D LTR MaLR -3 502 207 1725 136 54 0 chr13 31053941 31054221 -70818948 - AluJb SINE Alu -13 299 5 1838 181 69 82 chr13 31054221 31054426 -70818743 - MLT1D LTR MaLR -298 207 1 341 231 12 17 chr13 31054426 31054458 -70818711 + GA-rich Low_complexity Low_complexity 140 954 0 222 250 67 42 chr13 31054576 31054696 -70818473 + L2 LINE L2 3191 3313 0 346 277 214 14 chr13 31055712 31055932 -70817237 - L2 LINE L2 0 3313 3050 864 250 19 5 chr13 31056393 31056605 -70816564 - MER20 DNA MER1_type 0 219 5 279 0 0 0 chr13 31056746 31056777 -70816392 + (CA)n Simple_repeat Simple_repeat 1 31 0 279 339 92 31 chr13 31058006 31058148 -70815021 + MIR SINE MIR 4 148 -60 198 71 0 0 chr13 31058149 31058177 -70814992 + (ATG)n Simple_repeat Simple_repeat 2 29 0 1803 170 13 29 chr13 31058214 31058525 -70814644 + AluJo SINE Alu 1 306 -6 1734 99 0 5 chr13 31059678 31059901 -70813268 + AluSc SINE Alu 1 222 -87 333 0 0 0 chr13 31060196 31060233 -70812936 + (TG)n Simple_repeat Simple_repeat 1 37 0 451 258 68 0 chr13 31060489 31060637 -70812532 - MER20B DNA MER1_type -22 197 37 1651 214 15 42 chr13 31060737 31061143 -70812026 - MLT2C1 LTR ERVL 0 397 3 542 240 23 0 chr13 31061144 31061273 -70811896 + MER94 DNA DNA 3 134 0 524 214 119 0 chr13 31061545 31061671 -70811498 + MIR SINE MIR 12 152 -110 305 229 36 0 chr13 31061739 31061822 -70811347 + L2 LINE L2 1936 2021 -1293 818 309 84 54 chr13 31061833 31062380 -70810789 + L2 LINE L2 2154 2748 -524 329 0 24 0 chr13 31062380 31062421 -70810748 + (CA)n Simple_repeat Simple_repeat 1 42 0 818 309 84 54 chr13 31062421 31062737 -70810432 + L2 LINE L2 2748 3053 -219 1718 169 121 6 chr13 31062887 31063242 -70809927 + MSTD LTR MaLR 1 396 0 2296 106 3 0 chr13 31063297 31063590 -70809579 - AluSg SINE Alu -16 294 1 370 253 18 46 chr13 31063665 31063813 -70809356 - MIR SINE MIR -55 153 31 180 0 0 0 chr13 31064152 31064172 -70808997 + (A)n Simple_repeat Simple_repeat 1 20 0 347 320 67 13 chr13 31064456 31064606 -70808563 + MIR3 SINE MIR 19 176 -32 2250 76 40 23 chr13 31064740 31065044 -70808125 + AluY SINE Alu 1 309 -2 2549 153 61 67 chr13 31065295 31065611 -70807558 - MLT1D LTR MaLR 0 505 189 1687 176 39 23 chr13 31065611 31065917 -70807252 - AluJo SINE Alu -1 311 1 2549 153 61 67 chr13 31065917 31065988 -70807181 - MLT1D LTR MaLR -316 189 119 2159 197 76 5 chr13 31065988 31066424 -70806745 + MLT1C LTR MaLR 1 467 0 2549 153 61 67 chr13 31066424 31066543 -70806626 - MLT1D LTR MaLR -386 119 1 1497 205 81 40 chr13 31067050 31067494 -70805675 + MLT1C LTR MaLR 6 467 0 439 260 81 15 chr13 31068165 31068494 -70804675 + L1MB8 LINE L1 5668 6013 -151 329 175 63 0 chr13 31068636 31068699 -70804470 - AluS SINE Alu -1 299 233 2191 79 0 4 chr13 31068806 31069073 -70804096 - AluY SINE Alu -45 266 1 238 330 0 10 chr13 31069358 31069455 -70803714 + L2 LINE L2 2995 3090 -182 298 304 161 0 chr13 31069694 31069862 -70803307 + L3b LINE CR1 1221 1415 -168 * 331 330 94 9 chr13 31069849 31070029 -70803140 + MIR SINE MIR 6 208 -54 2087 106 35 0 chr13 31070029 31070312 -70802857 + AluSx SINE Alu 1 293 -19 331 330 94 9 chr13 31070312 31070343 -70802826 + MIR SINE MIR 208 235 -27 779 183 143 0 chr13 31072196 31072426 -70800743 - Charlie5 DNA MER1_type 0 2616 2354 701 197 0 8 chr13 31072449 31072571 -70800598 + FLAM_A SINE Alu 5 125 -8 764 185 96 11 chr13 31072589 31072767 -70800402 - Charlie5 DNA MER1_type -2419 193 1 288 308 57 13 chr13 31072784 31072943 -70800226 - L3 LINE CR1 -96 1481 1316 2465 63 3 0 chr13 31073513 31073814 -70799355 - AluSp SINE Alu -10 303 2 236 250 0 0 chr13 31073915 31073979 -70799190 - L1MC4a LINE L1 -1876 5932 5869 253 360 103 7 chr13 31076648 31076784 -70796385 + L2 LINE L2 3121 3269 -3 436 207 95 101 chr13 31077392 31077561 -70795608 + MIR SINE MIR 5 172 -90 591 251 48 18 chr13 31077722 31077889 -70795280 - MER45A DNA AcHobo -6 172 1 417 304 107 18 chr13 31078216 31078384 -70794785 + MIR3 SINE MIR 22 204 -4 1033 169 27 0 chr13 31078940 31079124 -70794045 - MER5A DNA MER1_type 0 189 1 2329 75 0 7 chr13 31079200 31079495 -70793674 + AluY SINE Alu 1 293 -18 2516 81 0 0 chr13 31079559 31079869 -70793300 + AluY SINE Alu 1 310 -1 233 233 93 12 chr13 31079956 31080042 -70793127 - MER5A DNA MER1_type -32 157 65 459 223 151 7 chr13 31080526 31080665 -70792504 - MER5A DNA MER1_type -1 188 30 1027 271 47 28 chr13 31081785 31082013 -70791156 + L1MD2 LINE L1 5470 5573 -597 2168 128 0 0 chr13 31082013 31082317 -70790852 + AluSx SINE Alu 1 304 -8 1027 271 47 28 chr13 31082317 31082532 -70790637 + L1MD2 LINE L1 5573 5783 -387 246 293 132 42 chr13 31082590 31082783 -70790386 + L1ME3A LINE L1 5940 6155 -15 441 0 0 0 chr13 31082783 31082832 -70790337 + (CA)n Simple_repeat Simple_repeat 1 49 0 246 293 132 42 chr13 31082832 31082850 -70790319 + L1ME3A LINE L1 6155 6170 0 2208 90 7 0 chr13 31082864 31083214 -70789955 + AluSg SINE Alu 1 352 0 1920 147 3 29 chr13 31084362 31084668 -70788501 + AluJo SINE Alu 1 298 -14 504 299 126 19 chr13 31084864 31085295 -70787874 - L2 LINE L2 -195 3077 2593 637 287 60 0 chr13 31085541 31085757 -70787412 + MIR SINE MIR 22 250 -12 23 0 0 0 chr13 31086448 31086471 -70786698 + AT_rich Low_complexity Low_complexity 1 23 0 212 286 0 0 chr13 31088807 31088863 -70784306 - L2 LINE L2 -16 3297 3242 465 256 92 43 chr13 31089263 31089470 -70783699 + L2 LINE L2 3097 3313 0 2140 159 11 19 chr13 31089857 31090227 -70782942 + L1MB4 LINE L1 5286 5652 -531 2409 151 26 30 chr13 31090233 31090698 -70782471 + L1MB4 LINE L1 5717 6179 -1 2279 99 7 0 chr13 31090873 31091167 -70782002 - AluSq SINE Alu -9 304 9 4085 146 9 0 chr13 31093175 31093804 -70779365 + MER41B LTR ERV1 1 635 0 516 307 88 30 chr13 31094702 31095087 -70778082 + MLT1J LTR MaLR 59 511 0 1028 228 65 8 chr13 31098681 31098944 -70774225 - LTR33 LTR ERVL 0 521 244 358 197 45 83 chr13 31098942 31099074 -70774095 - LTR33 LTR ERVL -394 127 1 * 292 227 118 50 chr13 31099176 31099295 -70773874 + MIR SINE MIR 25 151 -111 501 192 24 51 chr13 31100701 31100859 -70772310 + MIR SINE MIR 31 182 -61 183 129 0 0 chr13 31101156 31101187 -70771982 + (CAT)n Simple_repeat Simple_repeat 2 32 0 183 274 24 48 chr13 31101504 31101588 -70771581 + L2 LINE L2 3188 3269 -3 297 0 0 0 chr13 31101652 31101685 -70771484 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 804 209 8 57 chr13 31102309 31102553 -70770616 - L1MC5 LINE L1 -38 7923 7692 2492 62 7 10 chr13 31102716 31103025 -70770144 + AluY SINE Alu 1 308 -3 304 398 55 6 chr13 31103172 31103536 -70769633 + L1MEc LINE L1 503 884 -5941 258 105 0 0 chr13 31104029 31104067 -70769102 + (CA)n Simple_repeat Simple_repeat 2 39 0 237 267 125 8 chr13 31104090 31104210 -70768959 + L1MEc LINE L1 1115 1248 -5298 638 202 9 0 chr13 31104312 31104421 -70768748 - FLAM_A SINE Alu -20 122 13 767 272 50 3 chr13 31104429 31104750 -70768419 + L1MEc LINE L1 1303 1572 -4970 1014 260 39 24 chr13 31104773 31105104 -70768065 - MER76 LTR ERV -11 677 342 1772 175 6 19 chr13 31105105 31105419 -70767750 + AluJo SINE Alu 1 310 -2 989 176 39 11 chr13 31105428 31105610 -70767559 - MER76 LTR ERV -488 200 14 653 288 47 0 chr13 31105613 31105828 -70767341 + L1MEc LINE L1 1733 1957 -4868 242 301 0 0 chr13 31105843 31105916 -70767253 + A-rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr13 31105941 31105962 -70767207 + AT_rich Low_complexity Low_complexity 1 21 0 1283 246 59 33 chr13 31105963 31106149 -70767020 + L1MEc LINE L1 1962 2142 -4683 1572 206 24 7 chr13 31106149 31106436 -70766733 + AluJb SINE Alu 2 293 -19 1283 246 59 33 chr13 31106436 31106708 -70766461 + L1MEc LINE L1 2142 2432 -4393 203 221 303 57 chr13 31108432 31108713 -70764456 - L2 LINE L2 -15 3298 2949 1136 323 54 10 chr13 31109521 31110020 -70763149 + LTR33 LTR ERVL 1 521 0 873 283 48 58 chr13 31110227 31110661 -70762508 + L2 LINE L2 2835 3264 -49 274 291 89 0 chr13 31111058 31111137 -70762032 - L2 LINE L2 -27 3286 3201 679 259 24 131 chr13 31113524 31113814 -70759355 - L2 LINE L2 0 3272 3014 593 355 10 0 chr13 31113993 31114196 -70758973 - MIR SINE MIR -11 251 47 410 70 0 99 chr13 31114228 31114299 -70758870 + AluS SINE Alu 4 67 -246 2088 143 45 3 chr13 31114526 31114882 -70758287 - L1PA15 LINE L1 -2 6163 5793 241 280 13 0 chr13 31114893 31114968 -70758201 - L3b LINE CR1 -318 1265 1190 2066 87 6 62 chr13 31115089 31115410 -70757759 + AluSq SINE Alu 1 303 -10 1548 248 68 22 chr13 31116120 31116308 -70756861 - MLT1J LTR MaLR -54 457 279 1306 197 0 0 chr13 31116308 31116531 -70756638 + MER58A DNA MER1_type 1 223 -1 1548 248 68 22 chr13 31116531 31116757 -70756412 - MLT1J LTR MaLR -232 279 24 2020 203 17 0 chr13 31117102 31117521 -70755648 + L1PB4 LINE L1 5725 6150 -6 24 0 0 0 chr13 31117521 31117545 -70755624 + AT_rich Low_complexity Low_complexity 1 24 0 696 261 49 5 chr13 31118835 31119019 -70754150 + MER91A DNA MER1_type 3 194 -2 1904 121 48 0 chr13 31119158 31119448 -70753721 + AluSx SINE Alu 4 307 -5 506 283 103 30 chr13 31119795 31120028 -70753141 + MIR SINE MIR 11 260 -2 273 119 0 0 chr13 31122301 31122343 -70750826 + (A)n Simple_repeat Simple_repeat 1 42 0 1251 248 10 10 chr13 31122508 31122798 -70750371 + MLT1I LTR MaLR 120 409 0 374 208 40 163 chr13 31125510 31125712 -70747457 + L2 LINE L2 2921 3097 -175 3725 158 76 13 chr13 31125886 31126634 -70746535 - L1MC3 LINE L1 -12 7773 6979 251 273 15 0 chr13 31126636 31126702 -70746467 + L2 LINE L2 3246 3312 -1 2110 166 26 18 chr13 31126704 31127089 -70746080 + MLT1B LTR MaLR 1 388 -2 267 337 48 0 chr13 31127534 31127617 -70745552 + MIR3 SINE MIR 93 179 -29 593 286 36 55 chr13 31127649 31127756 -70745413 - MIR SINE MIR -44 218 111 1879 120 0 40 chr13 31127756 31128081 -70745088 + AluSx SINE Alu 1 312 0 593 286 36 55 chr13 31128081 31128193 -70744976 - MIR SINE MIR -151 111 3 24 0 0 0 chr13 31134809 31134833 -70738336 + GC_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr13 31136612 31136650 -70736519 + AT_rich Low_complexity Low_complexity 1 38 0 349 235 61 53 chr13 31137458 31137590 -70735579 + L1MC5 LINE L1 7733 7865 -96 762 307 0 9 chr13 31137735 31137953 -70735216 - MIR SINE MIR 0 262 47 226 288 0 30 chr13 31138878 31138944 -70734225 + MIR SINE MIR 183 246 -16 240 184 0 0 chr13 31139498 31139547 -70733622 + (CATA)n Simple_repeat Simple_repeat 2 50 0 279 324 39 70 chr13 31140104 31140363 -70732806 + L2 LINE L2 2286 2536 -778 1245 243 49 54 chr13 31140484 31140891 -70732278 + LTR16C LTR ERVL 85 489 -2 180 111 0 0 chr13 31140917 31140944 -70732225 + (T)n Simple_repeat Simple_repeat 1 27 0 2118 93 0 3 chr13 31140962 31141251 -70731918 + AluSg SINE Alu 2 289 -21 367 283 166 13 chr13 31141262 31141425 -70731744 - MIR SINE MIR -31 231 45 288 318 111 48 chr13 31141460 31141812 -70731357 + L2 LINE L2 2594 2967 -347 332 228 35 70 chr13 31142028 31142142 -70731027 + L2 LINE L2 3202 3311 -2 337 293 0 0 chr13 31143133 31143215 -70729954 - LTR16A1 LTR ERVL 0 457 376 803 186 0 7 chr13 31143227 31143367 -70729802 + FLAM_C SINE Alu 1 139 -4 408 266 124 72 chr13 31143369 31143606 -70729563 - LTR16A1 LTR ERVL -104 353 92 2251 75 0 0 chr13 31143606 31143919 -70729250 + AluY SINE Alu 1 313 0 408 266 124 72 chr13 31143919 31144011 -70729158 - LTR16A1 LTR ERVL -365 92 6 571 204 191 31 chr13 31144018 31144070 -70729099 - MER5A DNA MER1_type -1 188 146 719 179 0 0 chr13 31144070 31144187 -70728982 + FLAM_A SINE Alu 2 118 -15 279 0 0 0 chr13 31144187 31144218 -70728951 + (CA)n Simple_repeat Simple_repeat 2 32 0 571 204 191 31 chr13 31144218 31144326 -70728843 - MER5A DNA MER1_type -42 147 1 4032 113 4 73 chr13 31144443 31144567 -70728602 - MER41B LTR ERV1 0 635 504 2166 115 7 0 chr13 31144567 31144872 -70728297 + AluSq SINE Alu 3 309 -4 4032 113 4 73 chr13 31144872 31145429 -70727740 - MER41B LTR ERV1 -131 504 1 191 35 0 35 chr13 31145569 31145598 -70727571 + (CCCCCT)n Simple_repeat Simple_repeat 3 30 0 279 346 25 37 chr13 31145673 31145835 -70727334 + L3 LINE CR1 1025 1184 -393 467 335 39 22 chr13 31145863 31146042 -70727127 + L3 LINE CR1 1394 1575 -2 2801 185 30 4 chr13 31146046 31146539 -70726630 + MLT2B2 LTR ERVL 10 515 0 2161 126 47 19 chr13 31148575 31148940 -70724229 + THE1C LTR MaLR 1 375 0 1787 210 68 24 chr13 31149048 31149458 -70723711 + Charlie1a DNA MER1_type 1 428 -1027 785 157 25 0 chr13 31149463 31149584 -70723585 + AluJb SINE Alu 1 124 -188 228 184 0 0 chr13 31149587 31149636 -70723533 + GA-rich Low_complexity Low_complexity 2 50 0 3011 171 62 9 chr13 31149677 31150333 -70722836 + Charlie1a DNA MER1_type 765 1455 0 1031 209 130 0 chr13 31150415 31150645 -70722524 - MIR SINE MIR -2 260 1 2373 72 0 0 chr13 31151456 31151762 -70721407 - AluY SINE Alu -5 306 1 276 161 345 0 chr13 31152122 31152209 -70720960 + MIR3 SINE MIR 85 201 -7 270 247 65 54 chr13 31152426 31152519 -70720650 - L2 LINE L2 -21 3292 3199 358 278 130 18 chr13 31153278 31153447 -70719722 + MLT1L LTR MaLR 119 306 -309 390 208 0 0 chr13 31153448 31153525 -70719644 + L1ME1 LINE L1 5645 5721 -445 3946 152 62 0 chr13 31153546 31154783 -70718386 - pTR5 LTR ERV1 0 2468 1524 2490 106 9 6 chr13 31154783 31155133 -70718036 - THE1B LTR MaLR -13 351 1 1582 236 72 12 chr13 31155134 31155553 -70717616 + L1ME1 LINE L1 5718 6161 -5 507 235 65 144 chr13 31155565 31155673 -70717496 + MLT1L LTR MaLR 284 399 -216 2007 228 69 37 chr13 31155673 31156238 -70716931 + MER119 DNA MER1_type 1 583 0 507 235 65 144 chr13 31156238 31156264 -70716905 + MLT1L LTR MaLR 399 425 -190 1741 98 19 0 chr13 31156264 31156530 -70716639 + L1MA4A LINE L1 6027 6297 -6 507 235 65 144 chr13 31156530 31156700 -70716469 + MLT1L LTR MaLR 425 565 -50 367 283 165 42 chr13 31156711 31157152 -70716017 - L1ME4a LINE L1 -56 6065 5551 608 211 39 26 chr13 31157207 31157363 -70715806 + MLT1L LTR MaLR 163 320 -295 419 232 92 23 chr13 31157634 31157897 -70715272 - L1ME4a LINE L1 -686 5488 5215 234 0 0 0 chr13 31157919 31157945 -70715224 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 515 338 113 23 chr13 31157958 31158435 -70714734 - L1ME4a LINE L1 -1003 5143 4622 231 281 0 0 chr13 31158447 31158504 -70714665 - L1P LINE L1 -1552 4594 4538 458 332 20 84 chr13 31158543 31158841 -70714328 - L1ME4a LINE L1 -1646 4500 4222 231 284 21 21 chr13 31158883 31158978 -70714191 - L1ME4a LINE L1 -3794 2352 2258 2077 111 10 26 chr13 31159025 31159332 -70713837 + AluSx SINE Alu 1 302 -10 213 39 0 0 chr13 31159345 31159371 -70713798 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1934 126 7 0 chr13 31159565 31159858 -70713311 + AluSq SINE Alu 1 295 -18 256 151 430 0 chr13 31160488 31160574 -70712595 - L2 LINE L2 0 3313 3191 508 241 18 85 chr13 31161056 31161311 -70711858 - HAL1b LINE L1 -706 1664 400 847 280 67 93 chr13 31161318 31161811 -70711358 - MLT1K LTR MaLR -23 565 86 207 198 23 105 chr13 31161812 31161898 -70711271 + GA-rich Low_complexity Low_complexity 3 81 0 311 253 141 57 chr13 31161942 31162035 -70711134 - HAL1 LINE L1 -1046 1461 1377 9864 75 9 26 chr13 31162035 31163431 -70709738 - SVA Other Other 0 1386 15 311 253 141 57 chr13 31163431 31163634 -70709535 - HAL1 LINE L1 -1130 1377 1140 335 130 0 0 chr13 31164146 31164192 -70708977 - Alu SINE Alu -256 46 1 2080 89 0 38 chr13 31164735 31165051 -70708118 - AluY SINE Alu -7 304 1 7197 110 180 83 chr13 31165109 31166678 -70706491 + pTR5 LTR ERV1 142 2438 0 220 318 47 73 chr13 31166678 31166870 -70706299 + L2 LINE L2 3027 3213 -100 1246 178 63 49 chr13 31166947 31167234 -70705935 + AluJb SINE Alu 11 301 -11 262 282 35 58 chr13 31169783 31169957 -70703212 - L2 LINE L2 -225 3047 2878 320 252 25 33 chr13 31170152 31170269 -70702900 - MIR SINE MIR -61 147 32 218 192 19 0 chr13 31170291 31170343 -70702826 + (ATGGTG)n Simple_repeat Simple_repeat 1 53 0 683 292 105 0 chr13 31172054 31172273 -70700896 - MIR SINE MIR 0 262 21 2067 82 0 78 chr13 31172274 31172593 -70700576 - AluY SINE Alu -17 294 1 2320 94 0 0 chr13 31172669 31172977 -70700192 - AluSx SINE Alu -4 308 1 184 258 32 32 chr13 31173231 31173293 -70699876 - L3b LINE CR1 -230 1353 1292 2255 98 7 0 chr13 31173343 31173650 -70699519 - AluSg SINE Alu -1 309 1 455 313 8 8 chr13 31173819 31173950 -70699219 - MIR3 SINE MIR -63 145 15 277 327 126 13 chr13 31174017 31174176 -70698993 + MIR3 SINE MIR 23 199 -9 355 263 132 69 chr13 31174824 31175005 -70698164 - MIR3 SINE MIR -9 199 1 382 274 34 48 chr13 31175288 31175434 -70697735 + MIR3 SINE MIR 2 145 -63 1055 254 195 22 chr13 31176777 31176796 -70696373 + L2 LINE L2 2413 2427 -886 1906 145 0 10 chr13 31176796 31177100 -70696069 - AluJo SINE Alu -2 310 10 1055 254 195 22 chr13 31177100 31177692 -70695477 + L2 LINE L2 2427 3189 -124 2148 70 42 0 chr13 31177692 31177976 -70695193 + AluY SINE Alu 1 296 -15 1055 254 195 22 chr13 31177976 31178116 -70695053 + L2 LINE L2 3189 3304 -9 2215 98 0 3 chr13 31178116 31178421 -70694748 + AluSg SINE Alu 1 304 -6 2822 217 121 8 chr13 31178801 31179603 -70693566 + L1ME3A LINE L1 5261 6153 -17 1990 141 0 0 chr13 31179612 31179909 -70693260 - AluSx SINE Alu -15 297 1 531 243 95 0 chr13 31180339 31180487 -70692682 - MER103 DNA DNA -2 164 3 251 91 0 23 chr13 31180490 31180534 -70692635 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 580 244 68 50 chr13 31180569 31180912 -70692257 - MLT1J2 LTR MaLR -10 440 64 336 327 115 56 chr13 31180974 31181313 -70691856 + L2 LINE L2 2895 3253 -19 666 58 0 0 chr13 31181324 31181411 -70691758 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 256 339 0 0 chr13 31181511 31181573 -70691596 + G-rich Low_complexity Low_complexity 5 66 0 818 114 15 0 chr13 31181575 31181707 -70691462 + (GGAA)n Simple_repeat Simple_repeat 3 136 0 1982 114 50 0 chr13 31182086 31182383 -70690786 + AluSx SINE Alu 1 312 0 294 253 27 100 chr13 31182780 31182930 -70690239 + MIR SINE MIR 54 192 -70 2517 49 0 0 chr13 31184056 31184360 -70688809 + AluY SINE Alu 1 304 -7 21 0 0 0 chr13 31184427 31184448 -70688721 + AT_rich Low_complexity Low_complexity 1 21 0 2229 117 0 0 chr13 31185609 31185917 -70687252 + AluSc SINE Alu 1 308 -1 229 322 50 28 chr13 31185966 31186146 -70687023 - L2 LINE L2 -1211 2103 1920 1435 156 28 35 chr13 31187598 31187886 -70685283 - AluJo SINE Alu -20 292 7 397 254 63 16 chr13 31187892 31188018 -70685151 - MIR SINE MIR -115 147 16 573 244 77 18 chr13 31188510 31188678 -70684491 - MIR SINE MIR -70 192 15 2323 93 0 0 chr13 31188823 31189134 -70684035 - AluY SINE Alu 0 311 1 1852 133 0 37 chr13 31189137 31189460 -70683709 - AluJo SINE Alu -1 311 1 1977 101 4 0 chr13 31189469 31189747 -70683422 - AluSc SINE Alu -12 297 19 258 81 0 0 chr13 31189826 31189863 -70683306 + (GGGGA)n Simple_repeat Simple_repeat 1 37 0 213 194 0 0 chr13 31191046 31191082 -70682087 + polypurine Low_complexity Low_complexity 2 37 0 1903 149 3 0 chr13 31191182 31191490 -70681679 - AluSx SINE Alu -3 309 1 225 132 0 0 chr13 31191633 31191671 -70681498 + (CA)n Simple_repeat Simple_repeat 2 39 0 274 226 0 21 chr13 31192225 31192318 -70680851 + CT-rich Low_complexity Low_complexity 5 95 0 397 291 111 23 chr13 31192340 31192512 -70680657 - L2 LINE L2 -37 3235 3049 180 274 94 60 chr13 31192624 31192741 -70680428 - MIR3 SINE MIR -75 133 13 234 229 86 0 chr13 31193240 31193310 -70679859 - L2 LINE L2 0 3313 3238 194 263 0 12 chr13 31193978 31194058 -70679111 + GA-rich Low_complexity Low_complexity 2 80 0 422 252 16 16 chr13 31195377 31195500 -70677669 - LTR67 LTR ERVL -1 556 434 1467 240 160 55 chr13 31195942 31196504 -70676665 + MLT1E2 LTR MaLR 6 626 0 216 318 45 0 chr13 31196770 31196836 -70676333 + MIR SINE MIR 132 200 -62 * 419 258 83 23 chr13 31196810 31196942 -70676227 - MIR SINE MIR -121 141 2 396 0 0 0 chr13 31197410 31197454 -70675715 + (CA)n Simple_repeat Simple_repeat 2 45 0 531 269 62 22 chr13 31197530 31197757 -70675412 - L1M4b LINE L1 -6601 258 23 2148 116 3 0 chr13 31198679 31198980 -70674189 + AluSx SINE Alu 1 302 -10 350 341 100 6 chr13 31199175 31199345 -70673824 + MIR3 SINE MIR 15 200 -8 542 227 23 0 chr13 31199545 31199677 -70673492 - MIR SINE MIR 0 262 128 478 298 69 49 chr13 31200631 31200876 -70672293 - MIR SINE MIR 0 262 13 224 277 11 75 chr13 31202338 31202432 -70670737 - MIR SINE MIR -89 173 86 2153 100 3 0 chr13 31202971 31203271 -70669898 - AluY SINE Alu -10 301 1 815 259 161 33 chr13 31203485 31203906 -70669263 - MLT1L LTR MaLR 0 615 141 608 200 168 0 chr13 31205025 31205180 -70667989 - MER5A DNA MER1_type 0 189 9 1104 246 12 4 chr13 31205295 31205551 -70667618 + Charlie1b DNA MER1_type 1 258 -265 4892 138 15 88 chr13 31205575 31205738 -70667431 + L1MB3 LINE L1 5254 5427 -756 2128 97 7 0 chr13 31205738 31206027 -70667142 - AluSp SINE Alu -22 291 1 4892 138 15 88 chr13 31206027 31206599 -70666570 + L1MB3 LINE L1 5427 6039 -144 2940 105 21 2 chr13 31206599 31207019 -70666150 + MSTA LTR MaLR 1 428 0 4892 138 15 88 chr13 31207019 31207242 -70665927 + L1MB3 LINE L1 6039 6140 -43 1840 141 26 13 chr13 31207242 31207548 -70665621 - AluSx SINE Alu -2 310 1 4892 138 15 88 chr13 31207548 31207588 -70665581 + L1MB3 LINE L1 6140 6181 -2 327 381 20 7 chr13 31207773 31207920 -70665249 + MIR3 SINE MIR 4 152 -56 620 214 24 48 chr13 31208013 31208146 -70665023 - MER103 DNA DNA -1 165 35 1112 293 84 11 chr13 31208146 31208600 -70664569 - LTR16C LTR ERVL -2 489 3 620 214 24 48 chr13 31208600 31208634 -70664535 - MER103 DNA DNA -131 35 2 4751 117 3 3 chr13 31209025 31209718 -70663451 + L1PA16 LINE L1 5465 6157 -9 225 65 0 0 chr13 31209720 31209751 -70663418 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 48 48 0 chr13 31209751 31209793 -70663376 + (GA)n Simple_repeat Simple_repeat 1 44 0 248 293 13 0 chr13 31210532 31210607 -70662562 - MER116 DNA Mariner -2 78 3 24 67 0 0 chr13 31210786 31210831 -70662338 + AT_rich Low_complexity Low_complexity 1 45 0 2220 116 3 0 chr13 31210811 31211114 -70662055 - AluSp SINE Alu -9 304 1 1782 166 11 0 chr13 31211245 31211522 -70661647 + AluJb SINE Alu 1 280 -32 728 91 9 0 chr13 31211522 31211559 -70661610 + (GGAA)n Simple_repeat Simple_repeat 1 148 0 728 91 9 0 chr13 31211559 31211669 -70661500 + (GGAA)n Simple_repeat Simple_repeat 4 114 0 887 106 0 8 chr13 31211676 31211808 -70661361 + MER41A LTR ERV1 424 554 0 506 266 106 55 chr13 31212213 31212412 -70660757 + Charlie2 DNA MER1_type 1 209 -2653 2128 141 33 22 chr13 31213181 31213542 -70659627 - MLT1A1 LTR MaLR 0 365 1 256 170 21 0 chr13 31213925 31213972 -70659197 + MLT1K LTR MaLR 509 556 -32 379 354 45 44 chr13 31214308 31214868 -70658301 - L2 LINE L2 -212 3060 2507 215 269 65 11 chr13 31215307 31215400 -70657769 + L2 LINE L2 3173 3270 -2 1584 164 13 50 chr13 31215416 31215537 -70657632 + AluJo SINE Alu 1 125 -187 2206 116 0 3 chr13 31215537 31215831 -70657338 - AluSx SINE Alu -19 293 1 1584 164 13 50 chr13 31215831 31216007 -70657162 + AluJo SINE Alu 125 287 -25 23 33 0 0 chr13 31216330 31216360 -70656809 + AT_rich Low_complexity Low_complexity 1 30 0 2209 132 0 0 chr13 31216892 31217195 -70655974 - AluSx SINE Alu -9 303 1 371 267 14 122 chr13 31218001 31218222 -70654947 + MIR SINE MIR 18 214 -48 1058 261 157 42 chr13 31218690 31219167 -70654002 + MLT1H1 LTR MaLR 20 595 0 249 83 0 0 chr13 31219537 31219573 -70653596 + (TG)n Simple_repeat Simple_repeat 2 37 0 336 304 9 27 chr13 31220266 31220378 -70652791 + MER5B DNA MER1_type 36 145 -33 2084 250 113 50 chr13 31220392 31221489 -70651680 + HAL1 LINE L1 25 1190 -1317 491 298 25 12 chr13 31221647 31221808 -70651361 - MIR SINE MIR -3 259 97 333 0 0 0 chr13 31221886 31221923 -70651246 + (CA)n Simple_repeat Simple_repeat 2 38 0 2174 103 0 3 chr13 31222644 31222962 -70650207 - AluSx SINE Alu 0 320 4 2321 107 0 0 chr13 31222977 31223276 -70649893 - AluSg SINE Alu -11 299 1 1593 201 23 16 chr13 31223778 31224086 -70649083 + AluJb SINE Alu 1 310 -2 435 216 0 59 chr13 31224158 31224260 -70648909 - MIR SINE MIR -94 168 73 218 281 0 16 chr13 31224496 31224560 -70648609 - MIR3 SINE MIR -143 65 3 2210 153 67 34 chr13 31224769 31225071 -70648098 + MSTB1 LTR MaLR 2 323 -109 2458 86 0 0 chr13 31225071 31225373 -70647796 - AluSx SINE Alu -10 302 1 2210 153 67 34 chr13 31225373 31225487 -70647682 + MSTB1 LTR MaLR 323 432 0 364 274 8 129 chr13 31226990 31227087 -70646082 - MIR SINE MIR -12 250 143 1451 113 19 0 chr13 31227087 31227300 -70645869 - AluSg/x SINE Alu -5 305 89 364 274 8 129 chr13 31227300 31227374 -70645795 - MIR SINE MIR -119 143 62 2236 110 0 7 chr13 31227374 31227673 -70645496 + AluSx SINE Alu 2 298 -14 2123 108 17 14 chr13 31227676 31227973 -70645196 + AluSq SINE Alu 1 298 -15 364 274 8 129 chr13 31227973 31228051 -70645118 - MIR SINE MIR -202 60 27 259 306 28 28 chr13 31228176 31228284 -70644885 - L3 LINE CR1 -16 1561 1454 332 339 87 7 chr13 31228687 31228964 -70644205 - L1ME4a LINE L1 -172 5949 5651 2099 88 37 0 chr13 31228984 31229307 -70643862 - AluY SINE Alu 0 333 1 242 252 150 31 chr13 31229528 31229655 -70643514 + MIR3 SINE MIR 5 146 -62 2026 178 16 24 chr13 31229887 31230264 -70642905 - MLT1A2 LTR MaLR 0 374 1 266 263 42 32 chr13 31230378 31230473 -70642696 + MIR SINE MIR 51 146 -116 493 244 0 24 chr13 31230476 31230599 -70642570 - L2 LINE L2 0 3313 3194 2290 88 0 3 chr13 31232312 31232657 -70640512 - AluSq SINE Alu 0 344 1 288 276 98 6 chr13 31232827 31232990 -70640179 - L2 LINE L2 -528 2786 2609 2376 89 0 0 chr13 31233494 31233787 -70639382 + AluSg SINE Alu 1 293 -17 1593 202 48 11 chr13 31234370 31234722 -70638447 + MLT1A1 LTR MaLR 1 365 0 2262 89 17 0 chr13 31235076 31235369 -70637800 + AluSx SINE Alu 3 300 -12 662 308 53 84 chr13 31235610 31235918 -70637251 + L2 LINE L2 2300 2616 -656 1395 186 49 35 chr13 31235918 31236203 -70636966 + AluJo SINE Alu 1 289 -23 2367 98 0 16 chr13 31236212 31236529 -70636640 + AluSx SINE Alu 1 312 0 662 308 53 84 chr13 31236529 31237134 -70636035 + L2 LINE L2 2624 3229 -43 1939 174 66 24 chr13 31237253 31237633 -70635536 - MSTD LTR MaLR 0 396 1 872 269 117 49 chr13 31238277 31238788 -70634381 - L1MC4a LINE L1 -1844 5964 5400 2274 118 3 0 chr13 31238788 31239094 -70634075 + AluSx SINE Alu 1 307 -5 872 269 117 49 chr13 31239094 31239213 -70633956 - L1MC4a LINE L1 -2408 5400 5291 306 73 0 0 chr13 31240172 31240213 -70632956 + (CA)n Simple_repeat Simple_repeat 2 42 0 252 0 0 0 chr13 31240245 31240273 -70632896 + (TG)n Simple_repeat Simple_repeat 1 28 0 27 62 0 0 chr13 31241796 31241844 -70631325 + GC_rich Low_complexity Low_complexity 1 48 0 330 317 78 0 chr13 31241946 31242113 -70631056 + MIR3 SINE MIR 4 183 -25 194 0 39 0 chr13 31242261 31242287 -70630882 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2345 95 0 10 chr13 31244333 31244468 -70628701 + AluSx SINE Alu 1 136 -176 2469 61 0 3 chr13 31244468 31244765 -70628404 + AluY SINE Alu 1 296 -15 2345 95 0 10 chr13 31244765 31244934 -70628235 + AluSx SINE Alu 136 302 -10 1501 81 58 27 chr13 31244970 31245193 -70627976 - MER30 DNA MER1_type 0 230 1 272 174 43 22 chr13 31246086 31246178 -70626991 + (TA)n Simple_repeat Simple_repeat 2 95 0 395 316 53 29 chr13 31246988 31247159 -70626010 - MER5B DNA MER1_type 0 178 4 350 295 101 0 chr13 31249390 31249519 -70623650 - L2 LINE L2 -8 3264 3123 7211 28 8 0 chr13 31250093 31250930 -70622239 + L1PA4 LINE L1 5309 6152 -3 236 167 64 51 chr13 31250960 31251038 -70622131 + L1MC5 LINE L1 7853 7931 -30 1586 236 204 9 chr13 31251069 31251608 -70621561 - MER20B DNA MER1_type -139 644 1 692 193 47 0 chr13 31252219 31252369 -70620800 + MER5A DNA MER1_type 1 157 -32 2359 56 32 0 chr13 31252370 31252655 -70620514 - AluSc SINE Alu -15 294 1 3263 96 48 16 chr13 31252676 31253176 -70619993 - L1MA4A LINE L1 -6 6297 5782 1199 174 31 10 chr13 31253186 31253382 -70619787 - AluJo SINE Alu -112 200 1 3595 137 31 25 chr13 31253382 31253480 -70619689 - L1M2 LINE L1 -4780 2069 1973 2021 104 20 30 chr13 31253480 31253778 -70619391 - AluSx SINE Alu -17 295 1 3595 137 31 25 chr13 31253778 31254352 -70618817 - L1M2 LINE L1 -4876 1973 1393 561 239 24 54 chr13 31254464 31254631 -70618538 + MER5B DNA MER1_type 3 164 -14 213 235 49 59 chr13 31255585 31255687 -70617482 - L2 LINE L2 -165 3107 3007 584 238 137 54 chr13 31255713 31255844 -70617325 + L2 LINE L2 3013 3132 -181 2068 108 34 0 chr13 31255844 31256141 -70617028 - AluSx SINE Alu -5 307 1 2368 61 0 61 chr13 31256142 31256470 -70616699 - AluY SINE Alu -3 308 1 584 238 137 54 chr13 31256470 31256613 -70616556 + L2 LINE L2 3131 3312 -1 1551 139 131 4 chr13 31256840 31257114 -70616055 - AluSx SINE Alu -3 309 1 1850 170 0 3 chr13 31257372 31257666 -70615503 + AluJb SINE Alu 4 296 -16 445 315 73 23 chr13 31257740 31257959 -70615210 - L3 LINE CR1 -101 1476 1247 264 346 157 19 chr13 31258512 31258824 -70614345 - L3 LINE CR1 -323 1254 900 27361 87 13 8 chr13 31259017 31265406 -70607763 + L1PA7 LINE L1 12 6466 -3 1441 123 106 49 chr13 31265401 31265751 -70607418 + L1MA3 LINE L1 5936 6305 0 * 258 361 0 0 chr13 31265759 31265878 -70607291 + L1M4 LINE L1 3717 3835 -2311 27 62 0 0 chr13 31266144 31266192 -70606977 + AT_rich Low_complexity Low_complexity 1 48 0 937 110 55 22 chr13 31268878 31269060 -70604109 + L1MB3 LINE L1 5994 6181 -2 523 254 6 73 chr13 31269575 31269752 -70603417 - L2 LINE L2 0 3313 3149 2368 74 0 0 chr13 31269899 31270203 -70602966 + AluY SINE Alu 1 304 0 2109 171 110 79 chr13 31270205 31270608 -70602561 - L1ME1 LINE L1 -5 6161 5723 1770 130 76 0 chr13 31270608 31270884 -70602285 - AluSx SINE Alu -15 297 1 2109 171 110 79 chr13 31270884 31271216 -70601953 - L1ME1 LINE L1 -443 5723 5403 1996 179 128 96 chr13 31271225 31271842 -70601327 - L1ME1 LINE L1 -856 5290 4695 2447 70 0 10 chr13 31271842 31272156 -70601013 - AluY SINE Alu 0 311 1 1996 179 128 96 chr13 31272156 31272179 -70600990 - L1ME1 LINE L1 -1451 4695 4674 561 168 67 25 chr13 31272179 31272298 -70600871 - FLAM_C SINE Alu -8 125 2 1996 179 128 96 chr13 31272298 31272446 -70600723 - L1ME1 LINE L1 -1472 4674 4532 2105 98 45 11 chr13 31272446 31272733 -70600436 - AluSx SINE Alu -15 297 1 1996 179 128 96 chr13 31272733 31272822 -70600347 - L1ME1 LINE L1 -1614 4532 4382 2246 90 7 13 chr13 31273266 31273576 -70599593 - AluSq SINE Alu -5 308 1 305 291 51 25 chr13 31273629 31273787 -70599382 + L1M4 LINE L1 4425 4586 -1560 1619 141 81 32 chr13 31273796 31274079 -70599090 - AluJb SINE Alu -15 297 1 736 260 213 24 chr13 31274079 31274540 -70598629 - L1ME3A LINE L1 -41 6129 5582 2032 166 74 3 chr13 31274540 31274931 -70598238 + MSTA LTR MaLR 1 419 -9 6318 83 2 7 chr13 31275133 31276055 -70597114 - L1P LINE L1 -1206 4940 4023 514 203 62 0 chr13 31276198 31276326 -70596843 - MIR SINE MIR -18 244 109 2250 100 7 0 chr13 31276359 31276648 -70596521 - AluSq SINE Alu -22 291 1 293 315 56 0 chr13 31276710 31276857 -70596312 + MIR SINE MIR 33 141 -67 575 319 83 11 chr13 31276916 31277314 -70595855 - MLT1L LTR MaLR -13 602 70 199 230 54 40 chr13 31277962 31278036 -70595133 - L2 LINE L2 0 3272 3198 2130 120 3 3 chr13 31278357 31278648 -70594521 + AluSx SINE Alu 1 291 -21 255 79 0 0 chr13 31278788 31278826 -70594343 + (CA)n Simple_repeat Simple_repeat 2 39 0 306 249 114 85 chr13 31278840 31279041 -70594128 - L1MC4a LINE L1 -1913 5895 5689 188 263 26 97 chr13 31279041 31279155 -70594014 + MIR SINE MIR 155 260 -2 270 275 53 0 chr13 31279340 31279471 -70593698 - L1ME3A LINE L1 -2336 5472 5335 2084 102 27 17 chr13 31280480 31280774 -70592395 - AluSq SINE Alu -16 297 1 253 272 114 50 chr13 31283493 31283695 -70589474 - L2 LINE L2 -214 3058 2844 291 28 0 0 chr13 31283727 31283763 -70589406 + (TG)n Simple_repeat Simple_repeat 2 37 0 266 383 33 33 chr13 31286550 31286733 -70586436 + MER5A DNA MER1_type 6 188 -1 1532 153 80 28 chr13 31286819 31287106 -70586063 + AluJo SINE Alu 1 302 -10 263 270 0 0 chr13 31287220 31287283 -70585886 + MIR3 SINE MIR 131 193 -15 481 234 97 8 chr13 31287646 31287770 -70585399 + L2 LINE L2 3179 3313 0 189 0 0 0 chr13 31288226 31288247 -70584922 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1909 162 7 7 chr13 31288250 31288559 -70584610 + AluJo SINE Alu 1 309 -3 180 0 0 0 chr13 31288620 31288640 -70584529 + (A)n Simple_repeat Simple_repeat 1 20 0 923 189 13 0 chr13 31288765 31288924 -70584245 + FAM SINE Alu 9 169 -16 180 250 36 107 chr13 31289027 31289111 -70584058 - L2 LINE L2 -16 3297 3220 275 252 166 26 chr13 31290052 31290203 -70582966 - MIR SINE MIR -71 191 20 2387 63 7 3 chr13 31290567 31290868 -70582301 + AluY SINE Alu 1 302 -9 254 167 192 0 chr13 31291362 31291440 -70581729 - MER46C DNA MER2_type -1 337 245 422 206 0 0 chr13 31291447 31291520 -70581649 + Tigger7 DNA MER2_type 2 74 -476 555 140 348 0 chr13 31291524 31291688 -70581481 + Tigger7 DNA MER2_type 2271 2491 0 288 270 34 0 chr13 31291688 31291777 -70581392 - MER46C DNA MER2_type -99 239 148 192 77 0 0 chr13 31291817 31291843 -70581326 + (CA)n Simple_repeat Simple_repeat 1 26 0 719 260 51 5 chr13 31291887 31292083 -70581086 - MIR SINE MIR -57 205 1 2256 110 7 3 chr13 31292846 31293145 -70580024 + AluSg SINE Alu 1 300 -10 365 235 37 66 chr13 31293250 31293386 -70579783 + MIR SINE MIR 13 144 -118 1491 143 9 13 chr13 31294273 31294503 -70578666 + AluJb SINE Alu 3 231 -81 864 206 0 29 chr13 31294519 31294694 -70578475 + FRAM SINE Alu 1 170 -6 2033 108 36 33 chr13 31295563 31295868 -70577301 - AluSx SINE Alu -6 306 1 2481 62 13 3 chr13 31298458 31298766 -70574403 - AluSp SINE Alu -2 311 1 1458 167 40 67 chr13 31299378 31299508 -70573661 + L1MD1 LINE L1 1 133 -6407 1527 179 3 89 chr13 31299508 31299833 -70573336 + AluJo SINE Alu 1 297 -15 1458 167 40 67 chr13 31299833 31300073 -70573096 + L1MD1 LINE L1 133 361 -6179 1707 156 47 7 chr13 31300075 31300351 -70572818 + AluJo SINE Alu 1 287 -25 2584 220 70 74 chr13 31300388 31300702 -70572467 + L1MD1 LINE L1 3461 3775 -2765 1624 191 58 0 chr13 31300702 31300822 -70572347 + AluJb SINE Alu 1 113 -199 225 83 0 0 chr13 31300822 31300858 -70572311 + (TTAAA)n Simple_repeat Simple_repeat 3 38 0 1624 191 58 0 chr13 31300858 31301030 -70572139 + AluJb SINE Alu 113 310 -2 2584 220 70 74 chr13 31301030 31302006 -70571163 + L1MD1 LINE L1 3775 4746 -1794 1299 220 79 66 chr13 31302029 31302402 -70570767 + L1MD1 LINE L1 5033 5419 -1121 1663 204 0 7 chr13 31302402 31302701 -70570468 + AluJo SINE Alu 1 297 -15 1299 220 79 66 chr13 31302701 31302932 -70570237 + L1MD1 LINE L1 5419 5645 -895 355 245 75 9 chr13 31302937 31303043 -70570126 + L1MD1 LINE L1 6358 6470 -166 1221 204 69 11 chr13 31303052 31303312 -70569857 - AluJo SINE Alu -16 296 22 662 169 104 7 chr13 31303312 31303466 -70569703 + L1MD1 LINE L1 6461 6629 -7 1471 177 15 15 chr13 31303472 31303732 -70569437 - AluJb SINE Alu -15 297 38 1774 162 14 0 chr13 31303765 31304055 -70569114 + AluJb SINE Alu 1 294 -18 22 35 0 0 chr13 31304130 31304159 -70569010 + AT_rich Low_complexity Low_complexity 1 29 0 1113 178 78 25 chr13 31305783 31305921 -70567248 - MER33 DNA MER1_type -2283 302 173 1849 160 6 16 chr13 31305921 31306234 -70566935 + AluJo SINE Alu 1 310 -2 1113 178 78 25 chr13 31306234 31306376 -70566793 - MER33 DNA MER1_type -2412 173 7 270 189 38 0 chr13 31306809 31306862 -70566307 - MIR SINE MIR -115 147 93 238 248 55 55 chr13 31307260 31307369 -70565800 + MIR SINE MIR 105 213 -49 260 205 108 0 chr13 31307595 31307678 -70565491 + L1MD3 LINE L1 7881 7972 -23 192 40 0 0 chr13 31307693 31307718 -70565451 + (CA)n Simple_repeat Simple_repeat 2 26 0 799 194 6 24 chr13 31308939 31309104 -70564065 + MER20 DNA MER1_type 6 167 -52 280 215 0 15 chr13 31309238 31309303 -70563866 - L2 LINE L2 -2 3311 3248 1986 140 0 10 chr13 31309306 31309606 -70563563 - AluJo SINE Alu -13 299 3 1995 113 18 0 chr13 31310572 31310846 -70562323 + AluSx SINE Alu 25 303 -9 858 186 6 34 chr13 31311487 31311664 -70561505 + AluJb SINE Alu 137 308 -4 288 250 223 47 chr13 31312495 31312643 -70560526 - L2 LINE L2 -6 3266 3093 342 296 96 0 chr13 31312833 31312958 -70560211 - MIR SINE MIR -10 252 116 299 331 61 14 chr13 31313091 31313239 -70559930 + MIR SINE MIR 82 236 -26 456 258 32 8 chr13 31313273 31313397 -70559772 + MIR SINE MIR 90 216 -46 29 70 0 0 chr13 31313546 31313603 -70559566 + AT_rich Low_complexity Low_complexity 1 57 0 1989 109 10 20 chr13 31314061 31314363 -70558806 - AluSx SINE Alu -13 299 1 340 202 0 21 chr13 31315553 31315647 -70557522 + MER53 DNA DNA 98 189 0 530 118 0 0 chr13 31316043 31316119 -70557050 - AluS SINE Alu -13 299 224 2089 124 3 19 chr13 31316611 31316918 -70556251 + AluSc SINE Alu 1 302 -7 1751 108 0 4 chr13 31317312 31317553 -70555616 + AluSg/x SINE Alu 68 307 -5 1919 141 38 0 chr13 31318513 31318804 -70554365 + AluSx SINE Alu 1 302 -10 265 269 43 0 chr13 31319610 31319710 -70553459 - MIR SINE MIR -57 151 83 341 281 49 0 chr13 31319942 31320024 -70553145 + L2 LINE L2 3149 3234 -38 992 168 0 0 chr13 31321254 31321403 -70551766 + FRAM SINE Alu 1 144 -32 430 197 0 0 chr13 31322293 31322369 -70550800 - L2 LINE L2 -10 3303 3228 1766 139 78 24 chr13 31323299 31323557 -70549612 + AluSx SINE Alu 1 278 -34 222 62 0 0 chr13 31323557 31323589 -70549580 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1766 139 78 24 chr13 31323589 31323625 -70549544 + AluSx SINE Alu 278 311 -1 1967 141 0 26 chr13 31323780 31324093 -70549076 + AluJb SINE Alu 1 305 -7 1027 235 0 14 chr13 31324409 31324626 -70548543 - MER20 DNA MER1_type -4 215 2 2625 58 0 3 chr13 31324763 31325075 -70548094 + AluY SINE Alu 1 311 0 234 0 0 0 chr13 31325077 31325103 -70548066 + (TA)n Simple_repeat Simple_repeat 2 27 0 865 129 0 16 chr13 31326852 31326976 -70546193 - FLAM_C SINE Alu -11 122 1 22 0 0 0 chr13 31326982 31327004 -70546165 + AT_rich Low_complexity Low_complexity 1 22 0 673 281 151 30 chr13 31328330 31328661 -70544508 - L2 LINE L2 -505 2809 2439 220 231 179 0 chr13 31328810 31328888 -70544281 + L2 LINE L2 1883 1974 -1340 211 292 161 84 chr13 31328944 31329588 -70543581 + L2 LINE L2 2128 2821 -493 1968 88 8 4 chr13 31329589 31329852 -70543317 - AluSg SINE Alu -46 264 1 367 231 0 0 chr13 31329852 31329917 -70543252 - MER5A DNA MER1_type -121 68 4 1278 222 107 59 chr13 31329920 31330464 -70542705 + L1ME3 LINE L1 5591 6160 -2 433 309 77 13 chr13 31330741 31330972 -70542197 + L2 LINE L2 2794 3045 -268 301 238 58 165 chr13 31331981 31332326 -70540843 + L1M2 LINE L1 752 1059 -5790 1167 239 94 76 chr13 31332922 31333646 -70539523 - L1M4 LINE L1 -1353 4793 4057 326 196 152 11 chr13 31333647 31333739 -70539430 - L1M4 LINE L1 -2210 3936 3832 1517 178 165 0 chr13 31333761 31334149 -70539020 - LTR32 LTR ERVL -7 464 13 529 194 182 12 chr13 31334239 31334409 -70538760 + L1ME LINE L1 5381 5579 -585 6516 85 11 27 chr13 31335104 31336301 -70536868 - L1PA7 LINE L1 -3 6151 4960 15914 91 0 2 chr13 31336301 31338641 -70534528 + L1P LINE L1 2407 4743 -1403 302 238 12 48 chr13 31339233 31339317 -70533852 + MER21B LTR ERV1 3 83 -780 2125 100 0 0 chr13 31340272 31340553 -70532616 - AluSx SINE Alu -26 286 6 1098 142 39 34 chr13 31340897 31341102 -70532067 - AluJo SINE Alu -106 206 1 303 173 254 9 chr13 31341102 31341212 -70531957 - L1MB8 LINE L1 -269 5909 5773 5259 102 66 19 chr13 31341222 31342159 -70531010 - L1MA4A LINE L1 -1 7004 6024 937 195 0 0 chr13 31342172 31342331 -70530838 - AluJb SINE Alu -23 289 131 242 29 29 0 chr13 31342347 31342382 -70530787 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 437 171 0 13 chr13 31342386 31342462 -70530707 - AluJb SINE Alu -54 258 184 1402 182 115 7 chr13 31342463 31342732 -70530437 - AluJo SINE Alu -14 298 1 3012 190 28 9 chr13 31342732 31343407 -70529762 - L1MA4A LINE L1 -815 6033 5346 1961 137 7 0 chr13 31343520 31343813 -70529356 - AluSx SINE Alu -17 295 1 9364 178 13 30 chr13 31343813 31344834 -70528335 - L1MA4A LINE L1 -1844 5004 3967 1810 180 0 10 chr13 31344834 31345139 -70528030 - AluJo SINE Alu -8 304 3 9364 178 13 30 chr13 31345139 31345525 -70527644 - L1MA4A LINE L1 -2881 3967 3576 1895 161 0 10 chr13 31345525 31345816 -70527353 - AluJo SINE Alu -24 288 1 9364 178 13 30 chr13 31345816 31346373 -70526796 - L1MA4A LINE L1 -3272 3576 3090 2226 106 0 3 chr13 31346373 31346676 -70526493 - AluSg SINE Alu -8 302 1 9364 178 13 30 chr13 31346676 31347195 -70525974 - L1MA4A LINE L1 -3758 3090 2564 3161 216 90 35 chr13 31347197 31348220 -70524949 + L1M4 LINE L1 4015 5093 -1053 1455 230 84 94 chr13 31348220 31348847 -70524322 - L1MCa LINE L1 -5784 642 22 1204 196 56 11 chr13 31348853 31349139 -70524030 - L1MB8 LINE L1 -567 5599 5301 928 123 31 6 chr13 31349176 31349338 -70523831 - L1MA6 LINE L1 -6 6294 6129 201 149 15 90 chr13 31350604 31350671 -70522498 + A-rich Low_complexity Low_complexity 4 65 0 3070 260 37 32 chr13 31352558 31353616 -70519553 - L1PA12 LINE L1 -5204 2380 10 2404 80 7 0 chr13 31354020 31354321 -70518848 + AluY SINE Alu 1 303 -8 779 254 11 77 chr13 31354335 31354595 -70518574 + MLT1H LTR MaLR 72 314 -235 1383 118 48 0 chr13 31354650 31354879 -70518290 - L1MA5 LINE L1 -6 6294 6055 2813 196 17 39 chr13 31354885 31355898 -70517271 - L1 LINE L1 -3529 3259 2273 1856 163 7 13 chr13 31355898 31356198 -70516971 - AluSg SINE Alu -12 298 1 2813 196 17 39 chr13 31356198 31356317 -70516852 - L1 LINE L1 -4515 2273 2153 463 117 25 75 chr13 31356318 31356340 -70516829 - L1 LINE L1 -4851 1938 1916 285 29 0 0 chr13 31356340 31356374 -70516795 + (TA)n Simple_repeat Simple_repeat 1 34 0 1796 179 3 0 chr13 31356375 31356665 -70516504 - AluSx SINE Alu -21 291 1 463 117 25 75 chr13 31356665 31356760 -70516409 - L1 LINE L1 -4872 1917 1825 2390 65 3 37 chr13 31357257 31357579 -70515590 + AluY SINE Alu 1 311 0 432 0 0 0 chr13 31357579 31357627 -70515542 + (TA)n Simple_repeat Simple_repeat 2 49 0 2208 126 0 0 chr13 31358265 31358574 -70514595 - AluSg SINE Alu -1 309 1 6376 95 8 8 chr13 31358584 31359710 -70513459 - L1PA11 LINE L1 0 6174 5052 359 195 39 0 chr13 31359719 31359796 -70513373 - L1PA13 LINE L1 -5005 1782 1703 888 225 112 78 chr13 31360457 31360831 -70512338 + L1ME3A LINE L1 5779 6165 -5 2380 101 0 0 chr13 31360898 31361196 -70511973 + AluSg SINE Alu 1 298 -12 634 278 78 72 chr13 31361213 31361420 -70511749 + L1MC/D LINE L1 4798 5002 -1359 1429 175 36 68 chr13 31361420 31361728 -70511441 - AluJo SINE Alu -14 298 1 634 278 78 72 chr13 31361728 31362079 -70511090 + L1MC/D LINE L1 5002 5363 -998 1890 118 79 0 chr13 31362079 31362358 -70510811 + AluSg SINE Alu 1 301 -9 634 278 78 72 chr13 31362358 31362616 -70510553 + L1MC/D LINE L1 5363 5618 -743 3189 138 41 18 chr13 31362787 31363401 -70509768 + MER11A LTR ERVK 638 1265 -1 210 241 35 0 chr13 31366173 31366231 -70506938 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 213 39 0 0 chr13 31367571 31367597 -70505572 + (CA)n Simple_repeat Simple_repeat 2 27 0 253 183 0 24 chr13 31367601 31367683 -70505486 + (TA)n Simple_repeat Simple_repeat 2 81 0 301 302 0 38 chr13 31367689 31367795 -70505374 + L1MC4 LINE L1 6614 6715 -1327 213 202 12 24 chr13 31367841 31367925 -70505244 + (TA)n Simple_repeat Simple_repeat 1 83 0 5857 140 48 56 chr13 31367941 31368121 -70505048 + Tigger1 DNA MER2_type 1 181 -2237 2176 91 3 0 chr13 31368121 31368407 -70504762 - AluSg SINE Alu -23 287 1 5857 140 48 56 chr13 31368407 31369418 -70503751 + Tigger1 DNA MER2_type 181 1182 -1236 7386 178 38 122 chr13 31369419 31372679 -70500490 + L1M2c LINE L1 14 2745 -4043 2215 113 0 0 chr13 31372679 31372979 -70500190 + AluY SINE Alu 3 302 -9 7386 178 38 122 chr13 31372979 31374397 -70498772 + L1M2c LINE L1 2745 4281 -2507 2968 151 2 8 chr13 31374402 31374912 -70498257 + Tigger1 DNA MER2_type 1911 2417 -1 368 252 115 3 chr13 31376836 31377035 -70496134 - L1MC/D LINE L1 -364 5757 5609 2103 114 27 3 chr13 31377935 31378234 -70494935 - AluSc SINE Alu -3 306 1 355 295 74 19 chr13 31378777 31379035 -70494134 - HAL1b LINE L1 -609 739 468 5234 105 8 21 chr13 31379482 31379819 -70493350 - L1PA14 LINE L1 -2 6159 5819 2268 89 0 10 chr13 31379819 31380121 -70493048 - AluY SINE Alu -12 299 1 5234 105 8 21 chr13 31380121 31380622 -70492547 - L1PA14 LINE L1 -342 5819 5332 200 246 18 35 chr13 31381076 31381133 -70492036 - MIR SINE MIR -62 146 91 1881 143 0 0 chr13 31381632 31381905 -70491264 + AluSx SINE Alu 1 273 -39 213 121 0 0 chr13 31383030 31383063 -70490106 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2039 93 0 0 chr13 31383281 31383538 -70489631 + AluSg SINE Alu 33 289 -21 13289 136 36 18 chr13 31383563 31385878 -70487291 + L1MA2 LINE L1 1252 3635 -3930 2240 117 0 0 chr13 31385878 31386186 -70486983 + AluSc SINE Alu 1 308 -1 13289 136 36 18 chr13 31386186 31386440 -70486729 + L1MA2 LINE L1 3635 3883 -3682 8704 155 25 10 chr13 31386463 31386636 -70486533 + L1MA2 LINE L1 4943 5112 -2611 2153 132 3 0 chr13 31386636 31386940 -70486229 + AluSx SINE Alu 1 305 -7 8704 155 25 10 chr13 31386940 31389431 -70483738 + L1MA2 LINE L1 5112 7651 -72 306 150 67 0 chr13 31390132 31390192 -70482977 + U2 snRNA snRNA 6 69 -119 1791 15 0 0 chr13 31390382 31390586 -70482583 - L1PA2 LINE L1 -2 6153 5950 2179 128 3 3 chr13 31390594 31390906 -70482263 - AluSx SINE Alu 0 312 1 666 233 33 61 chr13 31391290 31391470 -70481699 + MER5A DNA MER1_type 14 188 -1 414 0 0 0 chr13 31391616 31391668 -70481501 - L1PA2 LINE L1 -154 6001 5950 2195 125 3 3 chr13 31391676 31391988 -70481181 - AluSx SINE Alu 0 312 1 622 221 40 47 chr13 31392372 31392521 -70480648 + MER5A DNA MER1_type 14 161 -28 788 169 4 161 chr13 31392786 31393046 -70480123 - MER20 DNA MER1_type 0 219 1 516 181 24 127 chr13 31394399 31394565 -70478604 - MLT1H LTR MaLR -22 527 379 2267 235 20 46 chr13 31394669 31395410 -70477759 + L1M2c LINE L1 1193 1952 -4837 1796 179 3 0 chr13 31395410 31395700 -70477469 + AluSx SINE Alu 1 291 -21 432 0 0 0 chr13 31395701 31395749 -70477420 + (TA)n Simple_repeat Simple_repeat 1 48 0 2267 235 20 46 chr13 31395749 31395771 -70477398 + L1M2c LINE L1 1917 1938 -4851 2866 185 18 44 chr13 31395772 31395891 -70477278 + L1M2c LINE L1 2153 2274 -4514 1933 156 7 13 chr13 31395891 31396192 -70476977 + AluSg SINE Alu 1 299 -11 2866 185 18 44 chr13 31396192 31397209 -70475960 + L1M2c LINE L1 2274 3259 -3529 1166 109 57 0 chr13 31397215 31397408 -70475761 + L1MA5 LINE L1 6055 6258 -42 774 256 11 75 chr13 31397486 31397752 -70475417 - MLT1H LTR MaLR -228 321 73 2419 79 0 7 chr13 31397767 31398071 -70475098 - AluY SINE Alu -9 302 1 40975 32 22 0 chr13 31398417 31404434 -70468735 + L1PA2 LINE L1 2 6155 0 3094 259 37 33 chr13 31404505 31405527 -70467642 + L1PA12 LINE L1 10 1035 -6546 6118 95 9 6 chr13 31405547 31407210 -70465959 + L1PA11 LINE L1 4452 6157 -17 304 232 42 0 chr13 31407218 31407325 -70465844 - L1ME3 LINE L1 -3 6159 6049 2474 261 80 36 chr13 31407326 31407706 -70465463 - L1M4 LINE L1 -1138 5008 4646 351 0 0 0 chr13 31407706 31407745 -70465424 + (CA)n Simple_repeat Simple_repeat 2 40 0 2474 261 80 36 chr13 31407745 31407909 -70465260 - L1M4 LINE L1 -1500 4646 4491 2308 82 3 3 chr13 31407909 31408201 -70464968 - AluY SINE Alu -15 296 5 2474 261 80 36 chr13 31408201 31408344 -70464825 - L1M4 LINE L1 -1655 4491 4356 6609 63 7 0 chr13 31408344 31409982 -70463187 - L1PA8 LINE L1 -9 6163 4508 1295 164 103 46 chr13 31409986 31410267 -70462902 - AluJo SINE Alu -15 297 1 2474 261 80 36 chr13 31410267 31410865 -70462304 - L1M4 LINE L1 -1792 4354 3660 1768 5 0 0 chr13 31412534 31412734 -70460435 + L1PA2 LINE L1 5956 6155 0 573 152 0 20 chr13 31413144 31413295 -70459874 + (TA)n Simple_repeat Simple_repeat 1 148 0 2333 95 3 0 chr13 31413396 31413702 -70459467 - AluSg SINE Alu -3 307 1 310 247 0 0 chr13 31413917 31413990 -70459179 - L1ME LINE L1 -474 5647 5575 28695 41 4 2 chr13 31416039 31419751 -70453418 - L1P LINE L1 -2423 3723 7 290 333 20 0 chr13 31420459 31420558 -70452611 + GA-rich Low_complexity Low_complexity 2 102 0 4982 155 45 13 chr13 31420684 31422152 -70451017 - L1MA8 LINE L1 0 6291 4774 293 242 127 72 chr13 31422992 31423131 -70450038 - L1ME LINE L1 -847 5299 5169 1864 153 0 7 chr13 31423131 31423419 -70449750 - AluJb SINE Alu -21 291 6 293 242 127 72 chr13 31423419 31423680 -70449489 - L1ME LINE L1 -977 5169 4877 355 268 21 7 chr13 31423791 31423933 -70449236 - L1ME LINE L1 -1454 4692 4549 23 0 0 0 chr13 31423973 31423996 -70449173 + AT_rich Low_complexity Low_complexity 1 23 0 911 281 105 20 chr13 31424073 31424127 -70449042 - L1ME LINE L1 -399 5763 5715 2125 105 14 0 chr13 31424127 31424421 -70448748 - AluSx SINE Alu -14 298 1 911 281 105 20 chr13 31424421 31425405 -70447764 - L1ME LINE L1 -447 5715 4637 * 4895 97 4 0 chr13 31425403 31426116 -70447053 + L1P LINE L1 572 1287 -4859 10980 37 0 0 chr13 31426120 31428262 -70444907 + L1PA5 LINE L1 4030 6150 -4 2598 244 94 60 chr13 31428296 31428609 -70444560 - L1ME LINE L1 -1538 4608 4307 1795 155 6 32 chr13 31428609 31428925 -70444244 - AluJb SINE Alu -4 308 1 2598 244 94 60 chr13 31428925 31429161 -70444008 - L1ME LINE L1 -1839 4307 4081 261 0 0 0 chr13 31429161 31429190 -70443979 + (TG)n Simple_repeat Simple_repeat 1 29 0 2598 244 94 60 chr13 31429190 31429221 -70443948 - L1ME LINE L1 -2065 4081 4053 1711 162 44 3 chr13 31429221 31429518 -70443651 + AluSg SINE Alu 1 309 -1 2598 244 94 60 chr13 31429518 31430282 -70442887 - L1ME LINE L1 -2093 4053 3317 2306 71 0 0 chr13 31430282 31430596 -70442573 + AluY SINE Alu 1 314 0 2598 244 94 60 chr13 31430596 31430981 -70442188 - L1ME LINE L1 -2829 3317 2798 2382 81 3 0 chr13 31430981 31431279 -70441890 + AluSp SINE Alu 1 299 -14 2598 244 94 60 chr13 31431279 31431495 -70441674 - L1ME LINE L1 -3348 2798 2591 706 276 36 23 chr13 31431735 31432043 -70441126 - L1ME LINE L1 -1998 4148 3837 2486 43 0 3 chr13 31432053 31432352 -70440817 - AluY SINE Alu -13 298 1 11786 194 36 12 chr13 31432433 31437868 -70435301 - L1PA16 LINE L1 -9 6860 1307 2553 148 12 0 chr13 31437875 31438280 -70434889 - L1PA16 LINE L1 -6437 412 3 423 337 98 25 chr13 31438281 31438607 -70434562 - L1ME LINE L1 -2322 3824 3475 568 137 21 0 chr13 31438610 31438705 -70434464 + AluSg/x SINE Alu 204 300 -12 578 183 92 12 chr13 31439051 31439215 -70433954 + MER96B DNA MER1_type? 3 179 -238 339 272 0 11 chr13 31439724 31439816 -70433353 - MER112 DNA MER1_type -8 252 162 2331 102 3 0 chr13 31439817 31440121 -70433048 + AluSp SINE Alu 1 305 -8 563 282 16 43 chr13 31440268 31440456 -70432713 + MIR3 SINE MIR 23 205 -3 1995 129 14 7 chr13 31440534 31440828 -70432341 + AluSx SINE Alu 1 296 -16 405 0 0 0 chr13 31441436 31441481 -70431688 + (TG)n Simple_repeat Simple_repeat 1 45 0 846 203 53 123 chr13 31441650 31442197 -70430972 - L1MC5 LINE L1 -48 7913 7405 509 254 23 8 chr13 31442197 31442327 -70430842 - MIR SINE MIR -42 220 89 2217 109 10 0 chr13 31443669 31443972 -70429197 - AluSx SINE Alu -6 306 1 221 351 69 15 chr13 31446132 31446263 -70426906 + L3b LINE CR1 1125 1262 -321 182 189 38 0 chr13 31446472 31446578 -70426591 + (TA)n Simple_repeat Simple_repeat 2 111 0 2009 120 4 7 chr13 31446601 31446877 -70426292 - AluSx SINE Alu -37 275 1 413 335 27 21 chr13 31447416 31447604 -70425565 - MER5A DNA MER1_type 0 189 1 218 365 113 4 chr13 31448070 31448300 -70424869 + L2 LINE L2 2393 2647 -667 266 235 195 40 chr13 31448388 31448537 -70424632 + MIR SINE MIR 81 252 -10 542 222 17 0 chr13 31448785 31448902 -70424267 - AluJb SINE Alu -4 308 190 904 161 0 0 chr13 31448904 31449041 -70424128 - FLAM_C SINE Alu -6 137 1 2442 70 0 6 chr13 31449268 31449580 -70423589 - AluY SINE Alu -1 310 1 2077 127 14 0 chr13 31450184 31450475 -70422694 + AluSx SINE Alu 5 299 -13 396 59 0 0 chr13 31450475 31450526 -70422643 + (TA)n Simple_repeat Simple_repeat 1 51 0 809 125 8 0 chr13 31451199 31451319 -70421850 - FRAM SINE Alu -28 148 28 3087 187 37 3 chr13 31451319 31451917 -70421252 + MER54A LTR ERVL 284 901 0 2321 101 7 0 chr13 31452903 31453201 -70419968 + AluSx SINE Alu 1 300 -12 992 24 81 0 chr13 31453952 31454076 -70419093 - MER85 DNA T2_type -2 137 4 1299 98 12 0 chr13 31455450 31455614 -70417555 - AluSg/x SINE Alu -15 295 130 1982 162 0 3 chr13 31455622 31455931 -70417238 - AluSx SINE Alu -4 308 1 2095 143 13 0 chr13 31456037 31456337 -70416832 - AluSx SINE Alu -8 304 1 17294 89 1 0 chr13 31456543 31459075 -70414094 - L1PA7 LINE L1 -1207 4939 2407 6525 78 7 16 chr13 31459075 31460264 -70412905 + L1PA7 LINE L1 4960 6150 -4 248 247 54 21 chr13 31462161 31462254 -70410915 + MIR SINE MIR 35 130 -78 2246 106 0 7 chr13 31464054 31464357 -70408812 - AluSx SINE Alu -11 301 1 1112 96 0 7 chr13 31464357 31464503 -70408666 - AluSq/x SINE Alu -167 145 1 778 224 0 0 chr13 31464667 31464810 -70408359 + FRAM SINE Alu 4 146 -30 351 0 0 0 chr13 31464814 31464853 -70408316 + (CA)n Simple_repeat Simple_repeat 2 40 0 876 178 12 0 chr13 31465261 31465424 -70407745 + AluJb SINE Alu 134 298 -14 209 200 247 35 chr13 31465445 31465530 -70407639 + MIR SINE MIR 21 123 -139 273 326 31 39 chr13 31465925 31466054 -70407115 - MIR SINE MIR -129 133 6 1951 124 0 22 chr13 31466810 31467124 -70406045 + AluSq SINE Alu 1 307 -6 900 235 68 56 chr13 31467279 31467526 -70405643 - MLT1L LTR MaLR -210 405 151 1339 230 46 9 chr13 31467526 31467852 -70405317 - MER58B DNA MER1_type -3 338 1 900 235 68 56 chr13 31467852 31467944 -70405225 - MLT1L LTR MaLR -464 151 62 2312 87 0 6 chr13 31468302 31468614 -70404555 + AluY SINE Alu 2 311 0 733 310 58 49 chr13 31468853 31469401 -70403768 - LTR67 LTR ERVL -3 554 2 236 237 140 18 chr13 31469413 31469527 -70403642 - L2 LINE L2 -304 2968 2841 1612 163 25 3 chr13 31469600 31469883 -70403286 - AluJo SINE Alu -21 291 3 203 88 29 0 chr13 31470063 31470097 -70403072 + (TC)n Simple_repeat Simple_repeat 2 36 0 1632 152 0 60 chr13 31470561 31470876 -70402293 - AluJo SINE Alu -15 297 2 581 272 116 13 chr13 31471422 31471646 -70401523 + MIR SINE MIR 16 262 0 509 111 12 12 chr13 31471792 31471873 -70401296 - FLAM SINE Alu -18 125 45 479 258 0 75 chr13 31471900 31472059 -70401110 - L2 LINE L2 -1 3312 3166 261 323 81 16 chr13 31472062 31472186 -70400983 + L2 LINE L2 3140 3271 -1 248 300 133 52 chr13 31472190 31472423 -70400746 - L2 LINE L2 -163 3150 2899 1284 159 58 39 chr13 31473618 31473875 -70399294 - AluJb SINE Alu -19 293 32 225 94 0 0 chr13 31473945 31473977 -70399192 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 2269 69 0 23 chr13 31474032 31474336 -70398833 - AluY SINE Alu -14 297 1 2194 96 3 0 chr13 31476148 31476449 -70396720 - AluSp SINE Alu -11 302 1 1366 91 11 0 chr13 31476685 31476872 -70396297 + AluSg1 SINE Alu 2 190 -119 378 0 0 0 chr13 31476886 31476928 -70396241 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 640 273 26 16 chr13 31477060 31477254 -70395915 - MIR SINE MIR -7 255 60 2540 48 0 3 chr13 31477362 31477673 -70395496 - AluY SINE Alu -1 310 1 2448 47 0 0 chr13 31477878 31478177 -70394992 - AluY SINE Alu -12 299 1 1380 85 0 0 chr13 31478647 31478824 -70394345 - AluSx SINE Alu -135 177 1 2146 71 0 52 chr13 31479027 31479335 -70393834 + AluSg SINE Alu 1 292 -18 225 263 0 18 chr13 31479936 31479993 -70393176 - MIR SINE MIR -68 140 85 200 299 126 39 chr13 31480339 31480466 -70392703 - L2 LINE L2 -177 3095 2958 1814 113 58 0 chr13 31481141 31481416 -70391753 - AluSp SINE Alu -22 291 1 1560 124 3 118 chr13 31481424 31481782 -70391387 - AluSx SINE Alu 0 321 1 346 274 159 57 chr13 31482074 31482231 -70390938 + MER5A DNA MER1_type 5 188 -1 230 231 83 83 chr13 31482232 31482340 -70390829 + MIR SINE MIR 102 209 -53 * 698 210 16 86 chr13 31482337 31482487 -70390682 + MER5A DNA MER1_type 17 153 -36 1113 146 169 50 chr13 31482487 31482748 -70390421 + AluJb SINE Alu 1 292 -10 698 210 16 86 chr13 31482748 31482783 -70390386 + MER5A DNA MER1_type 153 189 0 397 325 18 0 chr13 31482786 31482900 -70390269 + L2 LINE L2 3192 3307 -6 1946 108 3 17 chr13 31483294 31483589 -70389580 - AluSg SINE Alu -19 291 1 376 297 186 0 chr13 31483861 31484006 -70389163 + MIR SINE MIR 79 250 -12 2211 109 0 0 chr13 31484463 31484774 -70388395 - AluY SINE Alu 0 311 1 235 141 169 0 chr13 31485329 31485400 -70387769 + HsTC2 DNA Tc2 1795 1877 -21 1173 207 183 7 chr13 31486265 31486555 -70386614 - MLT1G3 LTR MaLR -10 520 180 1051 235 158 9 chr13 31486559 31486908 -70386261 - L1ME2 LINE L1 -68 6096 5696 1482 173 23 33 chr13 31487967 31488268 -70384901 + AluJo SINE Alu 7 304 -8 2318 64 14 3 chr13 31488273 31488569 -70384600 + AluY SINE Alu 1 299 -12 2300 82 0 3 chr13 31488728 31489032 -70384137 - AluY SINE Alu -8 303 1 2182 99 3 0 chr13 31489303 31489605 -70383564 - AluSq SINE Alu -10 303 1 2055 87 3 11 chr13 31490135 31490422 -70382747 + AluY SINE Alu 1 285 -26 41 0 0 0 chr13 31490422 31490463 -70382706 + AT_rich Low_complexity Low_complexity 1 41 0 1835 112 0 0 chr13 31490568 31490819 -70382350 + AluSg SINE Alu 1 251 -59 246 286 34 76 chr13 31492375 31492494 -70380675 + MIR SINE MIR 17 130 -78 2234 80 0 7 chr13 31494295 31494594 -70378575 - AluSx SINE Alu -13 299 3 2064 180 9 0 chr13 31494684 31495028 -70378141 - MER7A DNA MER2_type -1 345 1 193 297 212 8 chr13 31495590 31495708 -70377461 + MIR SINE MIR 16 157 -105 428 307 129 12 chr13 31495835 31495998 -70377171 - MER5A DNA MER1_type 0 189 8 1972 134 0 3 chr13 31496062 31496354 -70376815 - AluSx SINE Alu -21 291 1 205 368 0 23 chr13 31496354 31496441 -70376728 - MER5A DNA MER1_type -37 152 68 269 215 149 37 chr13 31496951 31497058 -70376111 - MIR SINE MIR -64 144 26 186 209 0 0 chr13 31497133 31497176 -70375993 + A-rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr13 31498312 31498338 -70374831 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 2371 68 7 0 chr13 31498886 31499195 -70373974 - AluY SINE Alu 0 311 1 1089 69 7 7 chr13 31499195 31499340 -70373829 - AluSq/x SINE Alu -167 145 1 867 175 0 0 chr13 31499504 31499647 -70373522 + FRAM SINE Alu 4 146 -30 333 0 0 0 chr13 31499649 31499686 -70373483 + (CA)n Simple_repeat Simple_repeat 2 38 0 990 162 12 0 chr13 31500096 31500269 -70372900 + AluJb SINE Alu 134 308 -4 209 200 247 35 chr13 31500296 31500381 -70372788 + MIR SINE MIR 21 123 -139 269 326 31 39 chr13 31500774 31500903 -70372266 - MIR SINE MIR -129 133 6 2208 93 0 25 chr13 31501659 31501980 -70371189 + AluSq SINE Alu 1 313 0 958 232 62 50 chr13 31502140 31502387 -70370782 - MLT1L LTR MaLR -210 405 151 1388 229 43 9 chr13 31502387 31502714 -70370455 - MER58B DNA MER1_type -3 338 1 958 232 62 50 chr13 31502714 31502806 -70370363 - MLT1L LTR MaLR -464 151 62 185 345 69 69 chr13 31503048 31503164 -70370005 - L2 LINE L2 -4 3268 3153 2293 81 0 10 chr13 31503164 31503474 -70369695 + AluY SINE Alu 2 308 -3 662 317 10 34 chr13 31503963 31504256 -70368913 - LTR67 LTR ERVL -270 287 2 259 214 143 18 chr13 31504270 31504382 -70368787 - L2 LINE L2 -306 2966 2841 1629 161 25 3 chr13 31504455 31504740 -70368429 - AluJo SINE Alu -20 292 2 203 88 29 0 chr13 31504919 31504953 -70368216 + (TC)n Simple_repeat Simple_repeat 2 36 0 1581 152 0 63 chr13 31505419 31505735 -70367434 - AluJo SINE Alu -15 297 2 553 261 109 35 chr13 31506282 31506512 -70366657 + MIR SINE MIR 16 262 0 463 134 0 24 chr13 31506651 31506733 -70366436 - FLAM_A SINE Alu -19 123 44 492 265 0 80 chr13 31506760 31506922 -70366247 - L2 LINE L2 -1 3312 3164 300 266 83 18 chr13 31506938 31507047 -70366122 + L2 LINE L2 3197 3312 -1 239 292 137 56 chr13 31507051 31507284 -70365885 - L2 LINE L2 -163 3150 2899 1326 160 52 37 chr13 31508465 31508734 -70364435 - AluJb SINE Alu -8 304 32 2240 70 0 24 chr13 31508796 31509094 -70364075 - AluY SINE Alu -20 291 1 1515 86 4 43 chr13 31510909 31511141 -70362028 - AluSq SINE Alu 0 313 91 7034 114 22 36 chr13 31511159 31512128 -70361041 + L1MA1 LINE L1 4316 5296 -1006 4686 25 0 0 chr13 31512128 31512659 -70360510 + L1PA3 LINE L1 5623 6153 -2 7034 114 22 36 chr13 31512659 31513674 -70359495 + L1MA1 LINE L1 5296 6302 0 454 238 128 80 chr13 31513747 31513974 -70359195 + MLT1H1 LTR MaLR 1 226 -329 2048 116 23 0 chr13 31513974 31514276 -70358893 + AluSc SINE Alu 1 309 0 454 238 128 80 chr13 31514276 31514323 -70358846 + MLT1H1 LTR MaLR 226 269 -286 2079 99 3 50 chr13 31514351 31514673 -70358496 + AluSx SINE Alu 6 312 0 2152 87 0 35 chr13 31514765 31515075 -70358094 + AluSg SINE Alu 3 301 -9 262 269 19 56 chr13 31515669 31515777 -70357392 - MIR SINE MIR -68 140 37 235 284 64 46 chr13 31516075 31516184 -70356985 - L2 LINE L2 -177 3095 2985 2196 70 53 0 chr13 31516869 31517153 -70356016 - AluSp SINE Alu -14 299 1 2121 125 0 0 chr13 31517186 31517473 -70355696 - AluSx SINE Alu -25 287 1 2538 62 3 0 chr13 31517500 31517807 -70355362 + AluY SINE Alu 1 308 -3 373 316 95 13 chr13 31518075 31518233 -70354936 + MER5A DNA MER1_type 19 189 0 249 247 111 0 chr13 31518233 31518314 -70354855 + MIR SINE MIR 102 191 -71 635 233 16 85 chr13 31518335 31518488 -70354681 + MER5A DNA MER1_type 14 153 -36 1224 118 171 49 chr13 31518488 31518751 -70354418 + AluJb SINE Alu 1 295 -17 635 233 16 85 chr13 31518751 31518786 -70354383 + MER5A DNA MER1_type 153 189 0 367 333 18 0 chr13 31518789 31518903 -70354266 + L2 LINE L2 3192 3307 -6 24 53 0 0 chr13 31519272 31519310 -70353859 + AT_rich Low_complexity Low_complexity 1 38 0 357 288 185 7 chr13 31519559 31519705 -70353464 + MIR SINE MIR 79 250 -12 229 163 82 0 chr13 31520693 31520742 -70352427 + HsTC2 DNA Tc2 1795 1847 -51 1282 208 140 60 chr13 31521630 31521968 -70351201 - MLT1G3 LTR MaLR -10 520 143 2044 97 11 4 chr13 31521968 31522271 -70350898 - AluSg SINE Alu 0 305 1 1282 208 140 60 chr13 31522271 31522331 -70350838 - MLT1G3 LTR MaLR -387 143 89 478 267 38 0 chr13 31522296 31522427 -70350742 - MER119 DNA MER1_type -277 306 171 * 521 111 22 11 chr13 31522519 31522609 -70350560 - MER2 DNA MER2_type -134 211 121 1927 144 3 7 chr13 31522609 31522907 -70350262 + AluSx SINE Alu 1 297 -15 2082 117 0 7 chr13 31522979 31523269 -70349900 - AluSx SINE Alu -17 295 8 1744 178 3 10 chr13 31523632 31523935 -70349234 - AluJb SINE Alu -5 307 7 762 218 0 0 chr13 31524171 31524304 -70348865 + FLAM_A SINE Alu 1 133 0 400 218 48 15 chr13 31524387 31524539 -70348630 - L1MD3 LINE L1 -1 7994 7782 1264 221 162 12 chr13 31524561 31524969 -70348200 - L1ME2 LINE L1 0 6164 5696 1656 179 3 29 chr13 31526021 31526334 -70346835 + AluJo SINE Alu 1 305 -7 2061 127 3 3 chr13 31526729 31527036 -70346133 - AluSq SINE Alu -6 307 1 1936 112 0 0 chr13 31527668 31527919 -70345250 + AluSg SINE Alu 1 251 -59 2133 83 22 0 chr13 31528128 31528431 -70344738 - AluSx SINE Alu 0 309 1 27 49 0 0 chr13 31528812 31528853 -70344316 + AT_rich Low_complexity Low_complexity 1 41 0 438 281 101 0 chr13 31529069 31529247 -70343922 + MIR SINE MIR 56 251 -11 213 206 0 0 chr13 31529218 31529252 -70343917 + L2 LINE L2 3227 3260 -12 * 2148 176 99 0 chr13 31530498 31530872 -70342297 - LTR57 LTR ERVL 0 411 1 1291 218 8 8 chr13 31531430 31531691 -70341478 + AluJo SINE Alu 39 299 -13 201 297 68 40 chr13 31532620 31532694 -70340475 + MIR3 SINE MIR 3 78 -130 * 362 250 118 37 chr13 31532682 31532818 -70340351 + MIR SINE MIR 116 262 0 516 217 19 0 chr13 31533299 31533405 -70339764 - L1MA10 LINE L1 -2 6332 6225 441 0 0 0 chr13 31533438 31533487 -70339682 + (CA)n Simple_repeat Simple_repeat 2 50 0 1962 181 28 65 chr13 31533492 31533694 -70339475 - L1ME1 LINE L1 -190 5976 5768 2331 82 0 20 chr13 31533694 31533997 -70339172 - AluSg SINE Alu -13 297 1 1962 181 28 65 chr13 31533997 31534257 -70338912 - L1ME1 LINE L1 -398 5768 5531 242 265 143 10 chr13 31534327 31534425 -70338744 + MIR SINE MIR 134 244 -18 2029 129 27 3 chr13 31534690 31534985 -70338184 - AluSg SINE Alu -8 302 1 200 180 20 20 chr13 31535677 31535727 -70337442 + (TTATA)n Simple_repeat Simple_repeat 1 50 0 1953 169 51 6 chr13 31536933 31537283 -70335886 + MER47A DNA MER2_type 1 366 0 198 0 0 0 chr13 31537557 31537579 -70335590 + (A)n Simple_repeat Simple_repeat 1 22 0 774 153 0 8 chr13 31537742 31537866 -70335303 - AluSg/x SINE Alu 0 309 187 1176 163 17 26 chr13 31537871 31538104 -70335065 - AluJb SINE Alu -81 231 1 260 268 37 24 chr13 31538117 31538199 -70334970 + MER5A DNA MER1_type 63 145 -44 368 273 143 19 chr13 31538218 31538379 -70334790 + MER5A DNA MER1_type 9 189 0 206 289 116 25 chr13 31538779 31538900 -70334269 + L2 LINE L2 2489 2620 -694 197 304 103 39 chr13 31539101 31539305 -70333864 + L2 LINE L2 1794 2010 -1304 491 251 121 35 chr13 31539673 31540004 -70333165 - MLT1L LTR MaLR -10 605 190 353 357 0 0 chr13 31540960 31541128 -70332041 + (TGG)n Simple_repeat Simple_repeat 1 168 0 656 256 14 58 chr13 31541954 31542161 -70331008 - LTR67 LTR ERVL -2 555 358 407 192 39 135 chr13 31542433 31542589 -70330580 - MER69A DNA AcHobo -1 176 36 200 315 0 90 chr13 31542651 31542740 -70330429 + L2 LINE L2 2981 3061 -211 262 154 0 0 chr13 31542895 31542934 -70330235 - Alu SINE Alu -263 39 1 2502 77 0 0 chr13 31543007 31543318 -70329851 - AluY SINE Alu 0 311 1 22 0 0 0 chr13 31543656 31543678 -70329491 + AT_rich Low_complexity Low_complexity 1 22 0 438 286 101 0 chr13 31543894 31544072 -70329097 + MIR SINE MIR 56 251 -11 217 243 0 0 chr13 31544040 31544077 -70329092 + L2 LINE L2 3224 3260 -12 * 21 57 0 0 chr13 31544360 31544395 -70328774 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr13 31544985 31545024 -70328145 + AT_rich Low_complexity Low_complexity 1 39 0 2272 171 79 0 chr13 31545245 31545626 -70327543 - LTR57 LTR ERVL 0 411 1 1310 212 11 8 chr13 31546179 31546443 -70326726 + AluJo SINE Alu 34 298 -14 379 239 116 22 chr13 31547432 31547570 -70325599 + MIR SINE MIR 112 262 0 2405 209 50 44 chr13 31548060 31548209 -70324960 - L1ME2 LINE L1 -9 6155 6008 207 69 0 0 chr13 31548209 31548238 -70324931 + (CA)n Simple_repeat Simple_repeat 2 30 0 2405 209 50 44 chr13 31548238 31548445 -70324724 - L1ME2 LINE L1 -156 6008 5804 2236 96 0 20 chr13 31548445 31548748 -70324421 - AluSg SINE Alu -13 297 1 2405 209 50 44 chr13 31548748 31549008 -70324161 - L1ME2 LINE L1 -360 5804 5534 297 250 130 10 chr13 31549078 31549178 -70323991 + MIR SINE MIR 134 245 -17 2235 96 3 0 chr13 31549470 31549761 -70323408 - AluSq SINE Alu -21 292 1 1582 173 0 47 chr13 31550772 31551090 -70322079 - AluJo SINE Alu -9 303 1 2310 100 0 3 chr13 31551116 31551417 -70321752 - AluSg SINE Alu -10 300 1 21 0 0 0 chr13 31551750 31551771 -70321398 + AT_rich Low_complexity Low_complexity 1 21 0 2077 118 3 3 chr13 31553078 31553366 -70319803 - AluSc SINE Alu -20 289 2 2150 131 0 0 chr13 31553478 31553784 -70319385 - AluSg SINE Alu -4 306 1 2195 129 0 0 chr13 31553895 31554189 -70318980 - AluSx SINE Alu -18 294 1 2225 102 7 7 chr13 31555187 31555491 -70317678 + AluSx SINE Alu 1 304 -8 303 244 13 13 chr13 31555604 31555682 -70317487 + L2 LINE L2 3193 3270 -2 833 274 70 27 chr13 31555692 31556020 -70317149 + HAL1 LINE L1 1441 1782 -725 2068 103 50 0 chr13 31556499 31556781 -70316388 + AluSc SINE Alu 1 296 -13 512 198 0 11 chr13 31556860 31556951 -70316218 + FRAM SINE Alu 71 160 -16 236 295 78 66 chr13 31557183 31557349 -70315820 + HAL1 LINE L1 2304 2471 -36 1721 166 39 106 chr13 31557694 31558110 -70315059 + MLT1B LTR MaLR 3 390 0 2336 100 0 0 chr13 31558284 31558584 -70314585 - AluSx SINE Alu -12 300 1 194 138 0 0 chr13 31559188 31559217 -70313952 - MIR SINE MIR -82 180 152 697 165 63 0 chr13 31559248 31559375 -70313794 - MLT1D LTR MaLR 0 505 371 774 138 0 0 chr13 31559391 31559500 -70313669 + FLAM_A SINE Alu 21 129 -13 245 148 34 182 chr13 31559500 31559588 -70313581 - MLT1D LTR MaLR -123 382 308 261 0 0 0 chr13 31559617 31559646 -70313523 + (TA)n Simple_repeat Simple_repeat 1 29 0 1314 186 84 11 chr13 31559646 31559920 -70313249 - AluJb SINE Alu -15 297 4 727 221 129 66 chr13 31559922 31560225 -70312944 - MLT1D LTR MaLR -183 322 1 230 37 0 0 chr13 31560226 31560253 -70312916 - MIR SINE MIR -164 98 72 21 0 0 0 chr13 31560484 31560505 -70312664 + GC_rich Low_complexity Low_complexity 1 21 0 380 242 85 34 chr13 31560860 31561077 -70312092 - LTR26E LTR ERV1 -7 720 356 376 213 65 26 chr13 31561140 31561300 -70311869 - LTR8 LTR ERV1 -399 142 1 2498 50 3 0 chr13 31561922 31562219 -70310950 + AluSp SINE Alu 1 298 -15 204 346 59 10 chr13 31562452 31562553 -70310616 + L2 LINE L2 2286 2391 -923 453 311 74 48 chr13 31562618 31562969 -70310200 + L2 LINE L2 2394 2753 -561 280 344 11 0 chr13 31563014 31563107 -70310062 + L2 LINE L2 2932 3025 -247 676 183 133 117 chr13 31563236 31563734 -70309435 - MER34B LTR ERV1 0 542 8 1778 130 0 96 chr13 31564091 31564414 -70308755 + AluSx SINE Alu 1 292 -20 1009 173 18 0 chr13 31564920 31565088 -70308081 - MER5A DNA MER1_type 0 189 19 925 133 7 27 chr13 31565115 31565265 -70307904 - FRAM SINE Alu -7 169 23 1171 145 40 72 chr13 31567658 31567934 -70305235 - L1MA7 LINE L1 -9 6282 6016 2032 142 39 6 chr13 31568000 31568337 -70304832 - MER7A DNA MER2_type 0 346 1 558 235 124 0 chr13 31569235 31569388 -70303781 + MER5B DNA MER1_type 1 172 -6 21 0 0 0 chr13 31569654 31569675 -70303494 + AT_rich Low_complexity Low_complexity 1 21 0 317 314 66 4 chr13 31569686 31569912 -70303257 - L1ME4a LINE L1 -252 5869 5630 413 259 101 54 chr13 31570032 31570214 -70302955 + L1MC4 LINE L1 7697 7902 -140 2287 105 0 3 chr13 31570214 31570510 -70302659 - AluSg SINE Alu -14 296 2 413 259 101 54 chr13 31570510 31570643 -70302526 + L1MC4 LINE L1 7902 8027 -15 1074 174 0 0 chr13 31570724 31570896 -70302273 + FAM SINE Alu 1 172 -3 2258 79 0 26 chr13 31570900 31571204 -70301965 + AluY SINE Alu 1 296 -15 222 235 20 0 chr13 31571898 31571949 -70301220 + CT-rich Low_complexity Low_complexity 3 54 0 2929 138 48 45 chr13 31571951 31572073 -70301096 - L1MB4 LINE L1 0 6180 6060 240 35 0 0 chr13 31572073 31572102 -70301067 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1951 104 0 78 chr13 31572102 31572409 -70300760 - AluSx SINE Alu -29 283 1 2929 138 48 45 chr13 31572409 31572913 -70300256 - L1MB4 LINE L1 -119 6061 5551 603 241 60 6 chr13 31573312 31573478 -70299691 + MER5B DNA MER1_type 2 176 -2 22 0 0 0 chr13 31573488 31573510 -70299659 + AT_rich Low_complexity Low_complexity 1 22 0 448 138 0 43 chr13 31573832 31573926 -70299243 - L1MC3 LINE L1 0 7785 7696 394 322 40 17 chr13 31573933 31574107 -70299062 + L1M4 LINE L1 5057 5234 -912 745 133 0 0 chr13 31574144 31574257 -70298912 - L1PA10 LINE L1 -8 6160 6048 1644 155 0 34 chr13 31574486 31574751 -70298418 + AluJo SINE Alu 1 256 -56 2298 92 0 7 chr13 31575672 31575967 -70297202 - AluSx SINE Alu -19 293 1 674 168 92 40 chr13 31576594 31576767 -70296402 + L1MC1 LINE L1 6127 6308 -25 1990 102 11 4 chr13 31576769 31577033 -70296136 - AluSq SINE Alu -18 295 30 2421 78 0 0 chr13 31577521 31577817 -70295352 + AluY SINE Alu 1 296 -15 2103 123 0 23 chr13 31577991 31578299 -70294870 - AluSx SINE Alu -11 301 1 269 319 85 0 chr13 31578428 31578522 -70294647 + L2 LINE L2 3169 3270 -2 1169 101 6 0 chr13 31579118 31579277 -70293892 + AluSp SINE Alu 137 296 -17 2220 102 0 0 chr13 31579486 31579770 -70293399 - AluY SINE Alu -27 284 1 1841 162 0 41 chr13 31579862 31580177 -70292992 - AluJo SINE Alu -10 302 1 2002 131 3 3 chr13 31580190 31580480 -70292689 - AluSx SINE Alu -22 290 1 1584 143 42 65 chr13 31580490 31580874 -70292295 - L1MB4 LINE L1 0 6180 5806 192 152 0 0 chr13 31581142 31581175 -70291994 + CT-rich Low_complexity Low_complexity 1 33 0 1788 153 4 11 chr13 31581175 31581450 -70291719 - AluJb SINE Alu -39 273 1 432 204 31 93 chr13 31581656 31581779 -70291390 - L1ME1 LINE L1 -9 6157 6045 1698 158 7 10 chr13 31581779 31582071 -70291098 + AluJo SINE Alu 5 295 -17 432 204 31 93 chr13 31582071 31582109 -70291060 - L1ME1 LINE L1 -121 6045 6006 180 236 127 0 chr13 31582595 31582650 -70290519 - L2 LINE L2 -1 3271 3210 232 282 29 0 chr13 31582952 31583055 -70290114 + (TA)n Simple_repeat Simple_repeat 2 107 0 734 134 21 7 chr13 31584415 31584557 -70288612 - L1MB3 LINE L1 -7 6176 6033 26 82 0 0 chr13 31584878 31584939 -70288230 + AT_rich Low_complexity Low_complexity 1 61 0 25 0 0 0 chr13 31584994 31585019 -70288150 + AT_rich Low_complexity Low_complexity 1 25 0 1934 147 20 0 chr13 31585772 31586064 -70287105 + AluJo SINE Alu 1 298 -14 279 0 0 0 chr13 31586450 31586481 -70286688 + (TG)n Simple_repeat Simple_repeat 1 31 0 22 56 0 0 chr13 31586652 31586688 -70286481 + AT_rich Low_complexity Low_complexity 1 36 0 529 292 29 12 chr13 31587162 31587333 -70285836 + MIR SINE MIR 4 177 -85 1278 183 103 0 chr13 31588035 31588336 -70284833 - L1MD3 LINE L1 -256 7739 7408 301 273 11 0 chr13 31588341 31588429 -70284740 - MLT1F1 LTR MaLR -443 124 36 2719 183 60 38 chr13 31588429 31589123 -70284046 - L1MC3 LINE L1 -813 6972 6263 316 194 69 0 chr13 31589146 31589218 -70283951 + Charlie2 DNA MER1_type 45 121 -2741 1519 219 154 3 chr13 31589336 31589925 -70283244 + Charlie2 DNA MER1_type 1880 2557 -305 540 225 33 0 chr13 31590117 31590268 -70282901 + MLT1B LTR MaLR 22 177 -213 283 233 153 74 chr13 31590283 31590498 -70282671 + Charlie2 DNA MER1_type 2525 2756 -106 189 322 96 17 chr13 31590642 31590757 -70282412 + MIR SINE MIR 52 175 -87 1501 241 93 22 chr13 31591591 31592193 -70280976 - MER20B DNA MER1_type -132 651 7 398 299 45 15 chr13 31592268 31592402 -70280767 - MIR SINE MIR -74 188 51 22 0 0 0 chr13 31592803 31592825 -70280344 + AT_rich Low_complexity Low_complexity 1 22 0 762 154 39 0 chr13 31592913 31593043 -70280126 + AluJo SINE Alu 1 135 -177 287 232 76 92 chr13 31593253 31593290 -70279879 + L2 LINE L2 3132 3168 -145 2218 129 0 3 chr13 31593290 31593601 -70279568 - AluSx SINE Alu -2 310 1 287 232 76 92 chr13 31593601 31593748 -70279421 + L2 LINE L2 3168 3313 0 29 28 0 0 chr13 31593792 31593828 -70279341 + AT_rich Low_complexity Low_complexity 1 36 0 399 97 0 28 chr13 31594029 31594101 -70279068 + L1MB3 LINE L1 6088 6157 -26 2427 59 0 0 chr13 31594525 31594811 -70278358 - AluY SINE Alu -21 290 5 520 157 20 0 chr13 31594821 31594923 -70278246 - MLT1F LTR MaLR 0 542 439 271 336 91 21 chr13 31595009 31595152 -70278017 + L2 LINE L2 2375 2527 -787 1669 154 90 0 chr13 31595803 31596069 -70277100 - AluJo SINE Alu -22 290 1 282 267 67 73 chr13 31596381 31596531 -70276638 + L2 LINE L2 3163 3311 -2 239 228 80 68 chr13 31597118 31597280 -70275889 - L1ME4a LINE L1 -11 6110 5947 2202 84 10 17 chr13 31597317 31597613 -70275556 - AluSx SINE Alu -18 294 1 311 244 30 73 chr13 31597768 31597803 -70275366 + L1ME4a LINE L1 4378 4413 -1733 288 53 0 0 chr13 31597803 31597841 -70275328 + (TG)n Simple_repeat Simple_repeat 2 39 0 311 244 30 73 chr13 31597841 31597969 -70275200 + L1ME4a LINE L1 4413 4534 -1612 1423 176 40 58 chr13 31597984 31598308 -70274861 - MER61E LTR ERV1 -7 787 459 1983 146 0 44 chr13 31598308 31598623 -70274546 + AluSx SINE Alu 1 301 -11 1423 176 40 58 chr13 31598623 31599008 -70274161 - MER61E LTR ERV1 -335 459 1 239 284 78 41 chr13 31599112 31599355 -70273814 + L1ME4a LINE L1 4678 4929 -1217 2397 75 0 3 chr13 31599481 31599776 -70273393 - AluSc SINE Alu -15 294 1 417 262 156 26 chr13 31599938 31600323 -70272846 + L1ME4a LINE L1 5657 6091 -30 3452 42 2 8 chr13 31601159 31601561 -70271608 - SVA Other Other 0 1386 987 333 89 0 18 chr13 31601666 31601722 -70271447 + Alu SINE Alu 244 298 -4 453 176 0 0 chr13 31603124 31603198 -70269971 + AluS SINE Alu 1 74 -238 2103 133 7 3 chr13 31603285 31603586 -70269583 + AluSx SINE Alu 1 302 -10 2244 109 0 3 chr13 31603959 31604253 -70268916 + AluSx SINE Alu 1 293 -19 277 151 0 140 chr13 31605151 31605183 -70267986 + MER116 DNA Mariner 1 36 -44 2107 81 46 14 chr13 31605183 31605466 -70267703 + AluY SINE Alu 1 292 -19 277 151 0 140 chr13 31605466 31605526 -70267643 + MER116 DNA Mariner 36 80 0 1587 167 6 69 chr13 31605595 31605913 -70267256 - AluJo SINE Alu -11 301 4 329 143 11 132 chr13 31606679 31606695 -70266474 + AluJb SINE Alu 203 219 -106 1803 146 188 6 chr13 31606695 31607057 -70266112 + MSTA LTR MaLR 1 428 0 9104 166 37 2 chr13 31607061 31608653 -70264516 + MSTA-int LTR MaLR 5 1651 0 2133 128 150 5 chr13 31608653 31609027 -70264142 + MSTA LTR MaLR 1 428 0 329 143 11 132 chr13 31609027 31609138 -70264031 + AluJb SINE Alu 220 325 0 1799 88 15 0 chr13 31609785 31610046 -70263123 + L1MA1 LINE L1 6034 6298 -4 23 0 0 0 chr13 31610046 31610069 -70263100 + AT_rich Low_complexity Low_complexity 1 23 0 1073 115 0 0 chr13 31610084 31610223 -70262946 + AluSg SINE Alu 1 139 -171 2246 86 0 0 chr13 31610223 31610526 -70262643 + AluSc SINE Alu 1 303 0 1625 180 11 0 chr13 31611095 31611379 -70261790 - AluSx SINE Alu -10 302 16 894 132 0 16 chr13 31611425 31611554 -70261615 + FLAM_C SINE Alu 1 127 -16 2410 57 0 7 chr13 31611950 31612247 -70260922 + AluY SINE Alu 1 295 -16 1831 149 0 17 chr13 31613258 31613546 -70259623 + AluJb SINE Alu 20 302 -10 2147 110 0 7 chr13 31613980 31614271 -70258898 + AluSx SINE Alu 1 289 -23 2010 190 47 14 chr13 31614343 31614770 -70258399 + MER68 LTR ERV1 1 441 -121 2083 107 7 10 chr13 31614806 31615096 -70258073 - AluSx SINE Alu -23 289 1 330 67 0 0 chr13 31616063 31616108 -70257061 + (TG)n Simple_repeat Simple_repeat 2 46 0 832 178 0 8 chr13 31616224 31616353 -70256816 - FLAM_C SINE Alu -5 128 1 851 143 38 23 chr13 31616699 31616832 -70256337 - AluJo SINE Alu -176 136 2 2213 114 0 3 chr13 31617317 31617614 -70255555 + AluSx SINE Alu 1 296 -16 510 239 148 14 chr13 31617666 31617808 -70255361 - MIR3 SINE MIR -21 187 27 5286 68 12 18 chr13 31618047 31618144 -70255025 + PABL_A LTR ERV1 1 97 -563 2191 116 7 3 chr13 31618144 31618445 -70254724 + AluSq SINE Alu 1 302 -11 5286 68 12 18 chr13 31618445 31619011 -70254158 + PABL_A LTR ERV1 97 660 0 22 0 0 0 chr13 31619242 31619264 -70253905 + AT_rich Low_complexity Low_complexity 1 22 0 460 235 59 0 chr13 31619554 31619673 -70253496 - L1ME4a LINE L1 -40 6081 5956 253 209 15 45 chr13 31619901 31619968 -70253201 - L1ME4a LINE L1 -511 5610 5546 5437 138 39 32 chr13 31619982 31620877 -70252292 + MER4D LTR ERV1 1 901 -2 222 37 0 0 chr13 31621499 31621526 -70251643 + (CA)n Simple_repeat Simple_repeat 2 28 0 220 271 0 0 chr13 31621576 31621624 -70251545 - MIR SINE MIR -108 154 107 21 0 0 0 chr13 31622252 31622273 -70250896 + AT_rich Low_complexity Low_complexity 1 21 0 975 214 17 34 chr13 31623259 31623497 -70249672 + MIR SINE MIR 29 262 0 23 0 0 0 chr13 31624293 31624316 -70248853 + AT_rich Low_complexity Low_complexity 1 23 0 2127 157 48 8 chr13 31624539 31624890 -70248279 + MLT1A1 LTR MaLR 1 365 0 212 280 67 13 chr13 31624980 31625055 -70248114 + L2 LINE L2 3190 3268 -4 2350 49 42 3 chr13 31625849 31626134 -70247035 - AluY SINE Alu -15 296 1 278 255 88 20 chr13 31626325 31626427 -70246742 - MIR SINE MIR -44 218 110 204 329 49 0 chr13 31626788 31626870 -70246299 - L2 LINE L2 -55 3217 3132 1997 106 84 0 chr13 31626887 31627171 -70245998 - AluSg SINE Alu -2 308 1 1213 155 0 19 chr13 31627753 31627959 -70245210 - AluSc SINE Alu 0 309 108 353 299 57 13 chr13 31628065 31628222 -70244947 + MIR3 SINE MIR 40 203 -5 2368 102 0 0 chr13 31628263 31628566 -70244603 + AluSg SINE Alu 1 303 -7 1984 147 0 3 chr13 31628599 31628891 -70244278 + AluJo SINE Alu 13 303 -9 2117 120 7 0 chr13 31628891 31629183 -70243986 + AluY SINE Alu 1 294 -17 2268 185 40 15 chr13 31629722 31630176 -70242993 - MLT1C LTR MaLR 0 467 3 189 270 16 48 chr13 31630802 31630865 -70242304 - L2 LINE L2 -1 3312 3252 2473 131 22 8 chr13 31631603 31631962 -70241207 - THE1B LTR MaLR 0 364 1 287 287 20 59 chr13 31631989 31632067 -70241102 - MIR SINE MIR -144 118 38 1778 163 40 10 chr13 31632067 31632186 -70240983 + AluJo SINE Alu 1 115 -197 486 0 0 0 chr13 31632186 31632240 -70240929 + (CA)n Simple_repeat Simple_repeat 2 55 0 453 19 0 0 chr13 31632239 31632293 -70240876 + (TC)n Simple_repeat Simple_repeat 2 55 0 * 1778 163 40 10 chr13 31632240 31632474 -70240695 + AluJo SINE Alu 115 310 -2 287 287 20 59 chr13 31632474 31632496 -70240673 - MIR SINE MIR -224 38 22 1573 170 48 4 chr13 31632498 31632768 -70240401 + AluJo SINE Alu 15 296 -16 2367 92 0 0 chr13 31633167 31633461 -70239708 + AluY SINE Alu 1 294 -17 304 276 103 86 chr13 31633797 31633841 -70239328 + MER5B DNA MER1_type 2 44 -134 2207 101 3 0 chr13 31633841 31634128 -70239041 - AluSc SINE Alu -13 296 9 304 276 103 86 chr13 31634128 31634257 -70238912 + MER5B DNA MER1_type 44 178 0 2310 87 3 0 chr13 31634678 31634966 -70238203 - AluSq SINE Alu -21 292 4 22 0 0 0 chr13 31635008 31635030 -70238139 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 7 89 chr13 31635312 31635447 -70237722 + L1ME4a LINE L1 5975 6098 -23 748 158 61 0 chr13 31635526 31635640 -70237529 + FLAM_A SINE Alu 10 130 -12 260 192 0 0 chr13 31636044 31636096 -70237073 - L1MB2 LINE L1 0 6171 6120 6146 33 3 18 chr13 31636096 31636827 -70236342 - SVA Other Other -2 1384 665 1369 108 0 0 chr13 31637047 31637223 -70235946 - AluSg SINE Alu -134 176 1 21 0 0 0 chr13 31637290 31637311 -70235858 + AT_rich Low_complexity Low_complexity 1 21 0 518 289 64 23 chr13 31637367 31637540 -70235629 - MIR SINE MIR -20 242 63 794 192 8 0 chr13 31637644 31637774 -70235395 + FLAM_A SINE Alu 1 131 -2 315 68 23 0 chr13 31637987 31638031 -70235138 - MADE1 DNA Mariner 0 80 36 1978 137 0 3 chr13 31638265 31638550 -70234619 + AluJb SINE Alu 16 299 -13 558 262 36 78 chr13 31638584 31638774 -70234395 - L1ME LINE L1 -509 5612 5440 2107 147 0 3 chr13 31638774 31639081 -70234088 - AluSx SINE Alu -6 306 1 558 262 36 78 chr13 31639081 31639222 -70233947 - L1ME LINE L1 -681 5440 5295 24 0 0 0 chr13 31639238 31639262 -70233907 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr13 31639305 31639341 -70233828 + AT_rich Low_complexity Low_complexity 1 36 0 188 286 0 52 chr13 31639448 31639525 -70233644 - MIR SINE MIR -133 129 57 488 257 96 20 chr13 31640643 31640872 -70232297 - MLT1I LTR MaLR -2 624 150 837 203 45 11 chr13 31641191 31641368 -70231801 - L2 LINE L2 0 3313 3131 312 280 95 45 chr13 31641893 31642093 -70231076 + L2 LINE L2 3104 3313 0 2442 63 10 10 chr13 31642491 31642792 -70230377 + AluSq SINE Alu 1 301 -12 421 242 10 30 chr13 31642879 31642978 -70230191 - L2 LINE L2 -4 3309 3213 1193 198 25 8 chr13 31642981 31643218 -70229951 - MLT1E3 LTR MaLR 0 624 384 451 192 0 0 chr13 31643227 31643305 -70229864 - FRAM SINE Alu -75 101 24 636 153 8 0 chr13 31643317 31643435 -70229734 - HsTC2 DNA Tc2 -140 1758 1640 1830 142 10 39 chr13 31643512 31643822 -70229347 - AluJb SINE Alu -11 301 1 2467 84 10 0 chr13 31644078 31644387 -70228782 - AluSx SINE Alu 0 312 1 684 89 7 15 chr13 31644521 31644656 -70228513 - SVA Other Other -592 794 661 5941 69 18 17 chr13 31644670 31645735 -70227434 - SVA Other Other -518 868 50 306 0 0 0 chr13 31645735 31645769 -70227400 + (GGGAGA)n Simple_repeat Simple_repeat 1 34 0 2321 204 26 76 chr13 31646466 31646967 -70226202 - L1ME1 LINE L1 -4 6162 5702 2309 98 7 0 chr13 31646967 31647263 -70225906 - AluSp SINE Alu -15 298 1 2321 204 26 76 chr13 31647263 31647444 -70225725 - L1ME1 LINE L1 -464 5702 5514 1053 261 21 73 chr13 31647440 31647812 -70225357 - L1MEc LINE L1 -6010 386 34 * 546 332 104 11 chr13 31647896 31648251 -70224918 + L2 LINE L2 2922 3309 -4 487 251 50 56 chr13 31648249 31648428 -70224741 - L2 LINE L2 -995 2319 2142 * 6141 98 18 11 chr13 31649396 31651397 -70221772 - L1PA16 LINE L1 -5 6161 4168 2093 127 0 10 chr13 31651440 31651747 -70221422 + AluSc SINE Alu 1 304 -5 186 308 23 77 chr13 31653334 31653464 -70219705 + L2 LINE L2 2249 2371 -943 2329 128 20 69 chr13 31653486 31653878 -70219291 - MER83C LTR ERV1 0 373 1 467 233 101 73 chr13 31654005 31654224 -70218945 + MIR SINE MIR 29 253 -9 2278 121 53 28 chr13 31654323 31654678 -70218491 - THE1B LTR MaLR 0 364 1 182 344 62 21 chr13 31654987 31655083 -70218086 - L2 LINE L2 -5 3267 3168 190 291 76 0 chr13 31655211 31655290 -70217879 - L2 LINE L2 -590 2724 2640 244 350 118 22 chr13 31655330 31655747 -70217422 - L2 LINE L2 -811 2503 2047 5945 79 20 23 chr13 31656187 31657056 -70216113 - SVA Other Other -520 866 1 2324 105 13 0 chr13 31657366 31657670 -70215499 + AluSg SINE Alu 1 308 -2 368 293 122 0 chr13 31657956 31658079 -70215090 + MIR3 SINE MIR 66 203 -5 2278 144 37 3 chr13 31658694 31659020 -70214149 + MER1B DNA MER1_type 1 337 0 821 166 45 13 chr13 31659062 31659219 -70213950 + FRAM SINE Alu 2 163 -13 2178 93 31 0 chr13 31659439 31659730 -70213439 + AluSq SINE Alu 1 300 -13 346 256 87 76 chr13 31659795 31660084 -70213085 - MER65-int LTR ERV1 -2959 1977 1686 226 67 44 0 chr13 31660090 31660135 -70213034 + (TTA)n Simple_repeat Simple_repeat 3 49 0 38853 29 23 2 chr13 31660135 31665575 -70207594 - L1PA3 LINE L1 -18 6137 576 806 211 0 0 chr13 31665611 31665763 -70207406 + FRAM SINE Alu 13 164 -12 1135 205 60 41 chr13 31665767 31666133 -70207036 - MER65-int LTR ERV1 -3306 1817 1445 1017 254 61 85 chr13 31666143 31666638 -70206531 - LTR38 LTR ERV1 -11 545 66 498 180 9 180 chr13 31666658 31666763 -70206406 - MER65-int LTR ERV1 -3691 1180 1059 191 0 32 32 chr13 31666763 31666794 -70206375 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1954 122 48 0 chr13 31666794 31667065 -70206104 - AluSx SINE Alu -1 314 1 498 180 9 180 chr13 31667065 31667183 -70205986 - MER65-int LTR ERV1 -3638 1233 1096 552 281 138 35 chr13 31667183 31667414 -70205755 - MER34C LTR ERV1 -171 414 160 3788 173 80 53 chr13 31667425 31667753 -70205416 - LTR49-int LTR ERV1 -3788 2543 2225 4982 73 24 37 chr13 31667753 31668426 -70204743 - MER4A LTR ERV1 0 664 1 3788 173 80 53 chr13 31668426 31669014 -70204155 - LTR49-int LTR ERV1 -4106 2225 753 2482 94 0 0 chr13 31669066 31669375 -70203794 + AluSg SINE Alu 1 309 -1 242 278 30 104 chr13 31670094 31670309 -70202860 - L1M4 LINE L1 -1305 4841 4658 1592 39 133 0 chr13 31670309 31670512 -70202657 - MER30 DNA MER1_type 0 230 1 242 278 30 104 chr13 31670512 31670634 -70202535 - L1M4 LINE L1 -1488 4658 4529 1854 162 0 3 chr13 31670635 31670943 -70202226 - AluJo SINE Alu 0 307 1 3486 110 9 38 chr13 31670952 31671505 -70201664 - L1MA8 LINE L1 -5 6286 5750 911 126 0 15 chr13 31671656 31671791 -70201378 - AluJb SINE Alu -176 136 4 1861 146 0 0 chr13 31671797 31672091 -70201078 - L1MA5A LINE L1 0 6297 6004 269 186 291 0 chr13 31672120 31672206 -70200963 - L1M4 LINE L1 -1801 4345 4235 1640 133 10 68 chr13 31672233 31672541 -70200628 - AluJo SINE Alu -22 290 1 891 262 120 23 chr13 31672827 31673276 -70199893 - L1MC/D LINE L1 -754 5392 5174 1349 165 0 30 chr13 31673335 31673565 -70199604 - AluJb SINE Alu -17 295 73 1612 203 3 16 chr13 31673567 31673878 -70199291 - AluJo SINE Alu 0 312 6 31 58 0 0 chr13 31673892 31673944 -70199225 + AT_rich Low_complexity Low_complexity 1 52 0 2369 89 0 0 chr13 31673989 31674281 -70198888 - AluSg SINE Alu -12 298 7 557 96 24 0 chr13 31674291 31674374 -70198795 - AluY SINE Alu -9 302 218 2172 52 8 4 chr13 31674593 31674861 -70198308 + AluY SINE Alu 32 300 -11 1053 174 7 109 chr13 31675380 31675673 -70197496 - L1ME1 LINE L1 -301 5865 5603 3272 71 28 0 chr13 31675675 31676097 -70197072 - MLT2A1 LTR ERVL -10 434 1 767 210 96 6 chr13 31676099 31676367 -70196802 - L1ME1 LINE L1 -553 5613 5180 2398 97 0 3 chr13 31676425 31676735 -70196434 - AluSg1 SINE Alu 0 309 1 279 300 77 20 chr13 31676781 31677078 -70196091 - L1MDa LINE L1 -3723 2406 2093 416 237 70 59 chr13 31677382 31677568 -70195601 - L1MC5 LINE L1 -36 7925 7738 31 26 0 0 chr13 31677587 31677625 -70195544 + AT_rich Low_complexity Low_complexity 1 38 0 360 272 184 27 chr13 31677685 31678060 -70195109 - L1MDa LINE L1 -4476 1653 1220 408 265 118 91 chr13 31678076 31678238 -70194931 - L1MDa LINE L1 -4910 1209 1053 2443 69 0 0 chr13 31678238 31678529 -70194640 - AluSq SINE Alu -5 308 18 408 265 118 91 chr13 31678529 31678891 -70194278 - L1MDa LINE L1 -5066 1053 671 1106 274 155 42 chr13 31678983 31679491 -70193678 + L1MEd LINE L1 333 783 -5336 2025 184 11 43 chr13 31679491 31679607 -70193562 - MLT1A1 LTR MaLR -2 363 245 2227 106 7 3 chr13 31679607 31679910 -70193259 + AluSq SINE Alu 1 304 -9 2025 184 11 43 chr13 31679910 31680168 -70193001 - MLT1A1 LTR MaLR -120 245 1 1106 274 155 42 chr13 31680168 31680487 -70192682 + L1MEd LINE L1 783 1253 -4866 319 335 148 19 chr13 31680605 31681145 -70192024 + L2 LINE L2 1201 1810 -1504 897 140 0 7 chr13 31681146 31681282 -70191887 - AluJo/FRAM SINE Alu -10 302 168 772 200 30 0 chr13 31681283 31681418 -70191751 + AluJo SINE Alu 29 167 -145 291 299 32 32 chr13 31681421 31681575 -70191594 + L2 LINE L2 1802 1955 -1359 1700 102 17 4 chr13 31681648 31681884 -70191285 - AluSg/x SINE Alu -8 304 66 474 280 70 32 chr13 31682010 31682057 -70191112 + MIR SINE MIR 53 97 -165 2706 14 0 0 chr13 31682057 31682350 -70190819 - AluY SINE Alu -18 293 1 474 280 70 32 chr13 31682350 31682488 -70190681 + MIR SINE MIR 97 245 -17 2060 102 11 4 chr13 31683254 31683529 -70189640 + AluSq SINE Alu 29 305 -8 2122 183 62 56 chr13 31683545 31684047 -70189122 + MLT1D LTR MaLR 1 505 0 203 223 181 64 chr13 31684268 31684362 -70188807 + L2 LINE L2 3168 3272 0 228 67 0 0 chr13 31685092 31685122 -70188047 + (A)n Simple_repeat Simple_repeat 1 30 0 1707 129 3 111 chr13 31685146 31685487 -70187682 + AluJb SINE Alu 2 305 -7 392 337 30 57 chr13 31687048 31687253 -70185916 + MIR3 SINE MIR 3 201 -7 2158 111 16 7 chr13 31687745 31688051 -70185118 - AluSq SINE Alu -4 309 1 305 266 12 92 chr13 31688094 31688287 -70184882 - MIR3 SINE MIR -69 139 2 883 153 0 8 chr13 31691885 31692016 -70181153 - FLAM_C SINE Alu -3 130 1 523 216 0 0 chr13 31692420 31692517 -70180652 - MER105 DNA DNA -43 161 65 686 312 168 35 chr13 31692615 31693536 -70179633 + L2 LINE L2 1621 2664 -650 262 247 108 44 chr13 31693709 31693867 -70179302 + L2 LINE L2 2939 3106 -166 412 300 21 50 chr13 31694483 31694623 -70178546 - MER5A DNA MER1_type 0 189 54 850 237 37 47 chr13 31694642 31694889 -70178280 + MIR SINE MIR 19 262 0 1393 90 0 0 chr13 31696022 31696199 -70176970 + AluSg/x SINE Alu 126 302 -10 553 118 0 0 chr13 31696225 31696310 -70176859 + AluSp/q SINE Alu 227 311 -2 1464 84 35 0 chr13 31696381 31696584 -70176585 - AluSp SINE Alu -13 300 91 448 162 105 0 chr13 31696941 31697046 -70176123 - AluSp SINE Alu -107 206 91 290 290 65 111 chr13 31697458 31697484 -70175685 - L2 LINE L2 0 3272 3246 1967 90 135 0 chr13 31697484 31697751 -70175418 + AluSp SINE Alu 1 303 0 290 290 65 111 chr13 31697751 31697941 -70175228 - L2 LINE L2 -26 3246 3066 274 263 25 12 chr13 31697939 31698019 -70175150 + L2 LINE L2 2641 2721 -593 * 2001 143 0 19 chr13 31698053 31698361 -70174808 - AluSx SINE Alu -8 304 3 1104 269 32 27 chr13 31698364 31698772 -70174397 + MLT1G LTR MaLR 21 410 -132 454 323 45 14 chr13 31698819 31699042 -70174127 + L2 LINE L2 2748 2977 -337 579 250 23 10 chr13 31699069 31699235 -70173934 + MIR SINE MIR 2 250 -12 645 239 130 29 chr13 31699276 31699514 -70173655 + L2 LINE L2 3047 3308 -5 1581 180 58 10 chr13 31700492 31700786 -70172383 - AluJb SINE Alu -2 310 3 2550 69 0 0 chr13 31700926 31701230 -70171939 + AluY SINE Alu 1 304 -7 351 318 56 0 chr13 31702215 31702322 -70170847 + L2 LINE L2 3153 3265 -7 2855 96 0 3 chr13 31702685 31703041 -70170128 - THE1A LTR MaLR 0 355 1 12589 89 2 1 chr13 31703041 31704618 -70168551 - THE1A-int LTR MaLR 0 1580 2 2658 83 6 3 chr13 31704626 31704974 -70168195 - THE1A LTR MaLR -6 349 1 1870 153 10 27 chr13 31705025 31705326 -70167843 - AluJo SINE Alu -16 296 1 277 132 0 38 chr13 31705549 31705602 -70167567 - Charlie1 DNA MER1_type -29 2732 2682 729 178 47 8 chr13 31705605 31705734 -70167435 - MER20 DNA MER1_type 0 219 86 1125 143 0 28 chr13 31705737 31705919 -70167250 + FRAM SINE Alu 1 168 -8 297 119 0 119 chr13 31705922 31705989 -70167180 - MER20 DNA MER1_type -160 59 1 1958 149 41 80 chr13 31705989 31706505 -70166664 - Charlie1 DNA MER1_type -75 2686 2191 573 236 115 0 chr13 31706512 31706660 -70166509 - Charlie1a DNA MER1_type -1290 165 1 399 212 119 8 chr13 31707299 31707417 -70165752 + L1ME4a LINE L1 5963 6093 -28 349 203 63 25 chr13 31709677 31709756 -70163413 - L2 LINE L2 -5 3267 3186 370 274 169 16 chr13 31709846 31710101 -70163068 - L1MC4a LINE L1 -1908 5900 5607 375 202 31 101 chr13 31710464 31710593 -70162576 - MIR SINE MIR -5 257 138 * 484 196 78 98 chr13 31710588 31710745 -70162424 - L2 LINE L2 -3 3310 3156 2767 149 126 22 chr13 31710745 31711283 -70161886 - LTR49 LTR ERV1 -1 594 1 484 196 78 98 chr13 31711283 31711329 -70161840 - L2 LINE L2 -157 3156 3111 1343 167 5 9 chr13 31711330 31711574 -70161595 + AluJo SINE Alu 63 305 0 347 273 153 28 chr13 31711576 31711752 -70161417 - L2 LINE L2 -193 3120 2923 2209 207 69 131 chr13 31711755 31712084 -70161085 + MER21B LTR ERV1 1 349 -514 2170 113 0 3 chr13 31712084 31712385 -70160784 - AluSc SINE Alu -9 300 1 2209 207 69 131 chr13 31712385 31712924 -70160245 + MER21B LTR ERV1 349 815 -48 244 224 26 13 chr13 31712950 31713026 -70160143 - L2 LINE L2 -366 2906 2830 * 398 243 24 15 chr13 31713016 31713147 -70160022 - MIR SINE MIR -42 166 35 255 299 209 35 chr13 31713396 31713764 -70159405 - L2 LINE L2 0 3272 2841 3218 60 10 2 chr13 31714227 31714625 -70158544 - MER9 LTR ERVK -110 401 1 3134 198 25 53 chr13 31714647 31715667 -70157502 + MLT-int LTR MaLR 1 1084 -651 1102 147 19 184 chr13 31715672 31716046 -70157123 - MER93b LTR ERV1 -61 312 1 244 333 11 86 chr13 31716076 31716172 -70156997 - MLT1J LTR MaLR -201 310 231 2188 89 3 14 chr13 31716172 31716465 -70156704 - AluSx SINE Alu -22 290 1 244 333 11 86 chr13 31716465 31716542 -70156627 - MLT1J LTR MaLR -280 231 150 551 236 103 24 chr13 31716547 31716749 -70156420 + Charlie8 DNA MER1_type 81 1395 -1022 4419 121 55 19 chr13 31716771 31717475 -70155694 + Tigger1 DNA MER2_type 24 753 -1665 1585 183 25 11 chr13 31717464 31717749 -70155420 + Tigger1 DNA MER2_type 2130 2418 0 * 237 65 0 0 chr13 31717832 31717863 -70155306 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 379 83 42 14 chr13 31718050 31718122 -70155047 + C-rich Low_complexity Low_complexity 4 77 0 1561 154 38 30 chr13 31718136 31718402 -70154767 - AluJb SINE Alu -44 268 1 1472 260 75 72 chr13 31718485 31718584 -70154585 - L2 LINE L2 -2 3311 3214 1749 156 0 27 chr13 31718584 31718885 -70154284 + AluJb SINE Alu 1 293 -19 1472 260 75 72 chr13 31718885 31719657 -70153512 - L2 LINE L2 -99 3214 2446 1852 166 3 0 chr13 31719657 31719941 -70153228 - AluJb SINE Alu -25 287 3 1472 260 75 72 chr13 31719941 31720172 -70152997 - L2 LINE L2 -867 2446 2208 2017 191 6 0 chr13 31720172 31720533 -70152636 + MLT1A1 LTR MaLR 1 363 -2 1472 260 75 72 chr13 31720533 31720736 -70152433 - L2 LINE L2 -1105 2208 2007 427 344 40 9 chr13 31720762 31721091 -70152078 - L2 LINE L2 -1929 1385 1047 22 0 0 0 chr13 31726176 31726198 -70146971 + AT_rich Low_complexity Low_complexity 1 22 0 211 183 118 43 chr13 31726821 31726914 -70146255 + MIR SINE MIR 76 175 -87 1670 173 19 13 chr13 31727088 31727395 -70145774 - AluJb SINE Alu -2 310 2 208 163 61 0 chr13 31727518 31727567 -70145602 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 2192 130 0 7 chr13 31727679 31727986 -70145183 - AluSx SINE Alu -7 305 1 233 250 250 0 chr13 31728165 31728289 -70144880 - MIR SINE MIR -6 256 102 780 122 0 99 chr13 31729164 31729336 -70143833 - AluJb SINE Alu -8 304 150 2107 123 0 17 chr13 31729570 31729872 -70143297 - AluSc SINE Alu -10 299 3 495 265 141 17 chr13 31730138 31730429 -70142740 - L1MC4a LINE L1 -1870 5938 5612 49 52 0 0 chr13 31730530 31730607 -70142562 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr13 31730782 31730804 -70142365 + AT_rich Low_complexity Low_complexity 1 22 0 189 75 125 25 chr13 31731318 31731358 -70141811 + L2 LINE L2 3267 3310 -3 192 217 11 98 chr13 31731482 31731574 -70141595 + MIR SINE MIR 120 203 -59 33080 102 11 55 chr13 31731614 31738051 -70135118 - L1PA7 LINE L1 -1 6153 12 245 94 0 0 chr13 31738132 31738164 -70135005 - L1P3 LINE L1 -5384 1077 1046 1592 94 13 34 chr13 31738557 31738792 -70134377 + MER30 DNA MER1_type 1 230 0 232 195 184 35 chr13 31739529 31739616 -70133553 + MIR SINE MIR 52 151 -111 26 0 0 0 chr13 31741181 31741207 -70131962 + AT_rich Low_complexity Low_complexity 1 26 0 226 250 146 21 chr13 31741461 31741557 -70131612 + MLT1I LTR MaLR 68 175 -234 859 227 152 45 chr13 31741587 31741917 -70131252 + MLT1G1 LTR MaLR 224 588 -7 1182 231 104 22 chr13 31741922 31742286 -70130883 - L1MC4a LINE L1 -1897 5911 5518 404 312 104 35 chr13 31742312 31742687 -70130482 - L1MC4a LINE L1 -748 5398 4998 4395 115 52 11 chr13 31742791 31743498 -70129671 + Tigger3b DNA MER2_type 18 753 -478 832 137 16 16 chr13 31743518 31743642 -70129527 - FRAM SINE Alu -30 146 23 3268 108 13 4 chr13 31743662 31744132 -70129037 + Tigger3b DNA MER2_type 744 1217 -14 1929 143 117 28 chr13 31747041 31747433 -70125736 - MSTC LTR MaLR 0 428 2 23 0 0 0 chr13 31747716 31747739 -70125430 + AT_rich Low_complexity Low_complexity 1 23 0 1737 164 3 30 chr13 31747739 31748043 -70125126 - AluJo SINE Alu -16 296 1 875 162 27 22 chr13 31749367 31749552 -70123617 + MER53 DNA DNA 2 187 -2 542 216 142 17 chr13 31749742 31749918 -70123251 - LTR33A LTR ERVL -55 468 271 506 255 163 0 chr13 31751404 31751557 -70121612 + MER5A DNA MER1_type 12 189 0 526 247 0 81 chr13 31751569 31751638 -70121531 - MER5B DNA MER1_type -1 177 104 2120 99 4 0 chr13 31751638 31751911 -70121258 + AluSg SINE Alu 37 310 0 526 247 0 81 chr13 31751911 31752015 -70121154 - MER5B DNA MER1_type -74 104 18 413 277 18 0 chr13 31754420 31754532 -70118637 + MIR SINE MIR 13 126 -136 1924 127 0 0 chr13 31756719 31756978 -70116191 - AluSq SINE Alu -54 259 1 328 292 25 17 chr13 31757058 31757178 -70115991 - MIR SINE MIR -122 140 20 2383 98 0 0 chr13 31757316 31757622 -70115547 - AluSq SINE Alu -7 306 1 271 362 34 0 chr13 31758103 31758252 -70114917 + MIR3 SINE MIR 25 178 -30 857 194 113 0 chr13 31758741 31758927 -70114242 + MER3 DNA MER1_type 1 207 -2 258 302 307 0 chr13 31759125 31759327 -70113842 - L2 LINE L2 -32 3240 2977 1456 175 86 0 chr13 31760966 31761223 -70111946 - AluJo SINE Alu -33 279 1 27 0 0 0 chr13 31763369 31763396 -70109773 + AT_rich Low_complexity Low_complexity 1 27 0 807 261 43 4 chr13 31763412 31763642 -70109527 - MIR SINE MIR -22 240 2 271 336 83 22 chr13 31764358 31764587 -70108582 - MIR SINE MIR -18 244 2 288 265 60 30 chr13 31766257 31766423 -70106746 + L2 LINE L2 2921 3091 -181 231 346 94 16 chr13 31767595 31767722 -70105447 + L2 LINE L2 3119 3255 -17 229 290 16 0 chr13 31767745 31767807 -70105362 - MIR SINE MIR 0 262 200 339 239 53 44 chr13 31768006 31768119 -70105050 + MIR SINE MIR 126 239 -23 427 344 108 15 chr13 31768381 31768724 -70104445 + L2 LINE L2 1596 1970 -1344 239 313 12 0 chr13 31768764 31768847 -70104322 - L1ME2 LINE L1 -15 6149 6066 1876 279 125 32 chr13 31768899 31770075 -70103094 + L2 LINE L2 2029 3313 0 2049 136 0 0 chr13 31771388 31771695 -70101474 - AluSx SINE Alu 0 309 3 534 147 32 0 chr13 31771947 31772042 -70101127 + MER20 DNA MER1_type 122 219 0 974 153 21 0 chr13 31772184 31772328 -70100841 + FAM SINE Alu 2 148 -37 375 276 129 45 chr13 31773234 31773636 -70099533 - L1ME4a LINE L1 -47 6074 5639 314 264 27 88 chr13 31773664 31773812 -70099357 - MIR SINE MIR -1 261 123 801 266 11 0 chr13 31774492 31774669 -70098500 - MIR SINE MIR -51 211 33 192 358 15 0 chr13 31774800 31774867 -70098302 - L2 LINE L2 -1 3312 3245 186 305 60 109 chr13 31775125 31775509 -70097660 - L2 LINE L2 -338 2976 2612 2022 114 29 16 chr13 31779913 31780219 -70092950 - AluSq SINE Alu 0 313 4 2396 76 3 0 chr13 31780383 31780674 -70092495 + AluSp SINE Alu 20 311 -2 184 302 0 0 chr13 31781129 31781172 -70091997 - MIR SINE MIR -2 260 218 503 258 107 22 chr13 31781181 31781406 -70091763 - L1ME4a LINE L1 -20 6101 5858 204 274 91 70 chr13 31782623 31782809 -70090360 - L2 LINE L2 -545 2769 2580 1765 186 10 10 chr13 31783848 31784154 -70089015 + AluJo SINE Alu 1 306 -6 221 191 21 0 chr13 31785405 31785452 -70087717 - L2 LINE L2 -3 3310 3263 528 293 48 12 chr13 31787245 31787412 -70085757 - MIR SINE MIR -14 248 76 22 35 0 0 chr13 31787870 31787899 -70085270 + AT_rich Low_complexity Low_complexity 1 29 0 624 206 16 0 chr13 31788512 31788638 -70084531 + MER94 DNA DNA 6 133 -1 3659 67 11 60 chr13 31789024 31789558 -70083611 - L1PA7 LINE L1 0 6154 5647 31 68 0 0 chr13 31789786 31789845 -70083324 + AT_rich Low_complexity Low_complexity 1 59 0 201 300 193 20 chr13 31790853 31791003 -70082166 - MIR SINE MIR -79 183 8 2256 117 0 0 chr13 31791468 31791758 -70081411 - AluSc SINE Alu -19 290 1 611 271 0 7 chr13 31792190 31792334 -70080835 + MIR SINE MIR 112 254 -8 415 287 181 37 chr13 31792659 31792875 -70080294 + MIR SINE MIR 16 262 0 318 241 12 0 chr13 31793779 31793862 -70079307 - L1MA8 LINE L1 0 6291 6208 220 180 0 33 chr13 31794012 31794073 -70079096 + C-rich Low_complexity Low_complexity 4 62 0 437 154 65 14 chr13 31794507 31794791 -70078378 + (CA)n Simple_repeat Simple_repeat 1 298 0 255 217 14 14 chr13 31795117 31795186 -70077983 + (TG)n Simple_repeat Simple_repeat 2 70 0 870 119 0 0 chr13 31796271 31796397 -70076772 - FLAM_C SINE Alu -6 137 12 387 157 0 0 chr13 31796902 31796972 -70076197 + C-rich Low_complexity Low_complexity 5 74 0 272 236 0 56 chr13 31796990 31797062 -70076107 + polypyrimidine Low_complexity Low_complexity 3 70 0 1987 194 97 0 chr13 31797639 31798093 -70075076 + MLT1D LTR MaLR 8 505 0 579 171 0 27 chr13 31798148 31798259 -70074910 + AluJb SINE Alu 204 311 -1 255 61 0 0 chr13 31798742 31798775 -70074394 + (CA)n Simple_repeat Simple_repeat 2 34 0 351 282 91 64 chr13 31799801 31800021 -70073148 - L2 LINE L2 -11 3302 3077 187 290 0 0 chr13 31800190 31800252 -70072917 - L2 LINE L2 -559 2755 2694 303 175 0 0 chr13 31800690 31800747 -70072422 + CT-rich Low_complexity Low_complexity 2 58 0 180 276 76 48 chr13 31800756 31800861 -70072308 - L2 LINE L2 -47 3266 3159 335 333 97 46 chr13 31800890 31801127 -70072042 + L1ME4a LINE L1 5653 5901 -269 306 204 68 11 chr13 31801315 31801403 -70071766 + L1ME4a LINE L1 5970 6062 -59 1789 158 3 70 chr13 31801730 31802058 -70071111 + AluJb SINE Alu 1 306 -6 292 221 55 102 chr13 31802897 31803024 -70070145 - MIR3 SINE MIR -25 183 63 293 276 51 83 chr13 31804193 31804349 -70068820 - MIR SINE MIR -1 261 111 1828 241 141 23 chr13 31804389 31804588 -70068581 + MER69B DNA AcHobo 27 201 -2325 2268 94 0 7 chr13 31804588 31804886 -70068283 - AluSc SINE Alu -13 296 1 1828 241 141 23 chr13 31804886 31805750 -70067419 + MER69B DNA AcHobo 201 1218 -8 229 250 67 0 chr13 31805758 31805818 -70067351 - MIR SINE MIR -146 116 53 191 192 19 19 chr13 31805925 31805977 -70067192 - MER5A DNA MER1_type -134 55 4 307 298 26 46 chr13 31806284 31806435 -70066734 + MIR SINE MIR 60 207 -55 224 370 14 0 chr13 31807845 31807918 -70065251 - L2 LINE L2 0 3272 3199 655 275 171 21 chr13 31808408 31808944 -70064225 - L2 LINE L2 -1 3312 2689 182 200 29 0 chr13 31809256 31809291 -70063878 - MIR SINE MIR -20 242 207 383 187 244 24 chr13 31809592 31809715 -70063454 - MLT1H LTR MaLR -4 545 396 2708 191 16 29 chr13 31813033 31813587 -70059582 - MER74A LTR ERVL -9 549 3 397 268 200 0 chr13 31813670 31813860 -70059309 - MLT1H LTR MaLR -321 228 1 238 266 148 8 chr13 31814313 31814441 -70058728 - MIR SINE MIR 0 262 117 883 224 52 14 chr13 31815733 31815943 -70057226 + MER20 DNA MER1_type 1 218 -1 1029 164 102 58 chr13 31816006 31816232 -70056937 - MER46A DNA MER2_type 0 236 1 230 93 0 23 chr13 31816403 31816446 -70056723 + (CAT)n Simple_repeat Simple_repeat 3 44 0 273 167 0 0 chr13 31816607 31816661 -70056508 + (CAT)n Simple_repeat Simple_repeat 3 56 0 342 0 0 0 chr13 31816874 31816912 -70056257 + (CA)n Simple_repeat Simple_repeat 2 39 0 497 245 96 32 chr13 31817810 31817998 -70055171 + LTR16A1 LTR ERVL 4 203 -254 1240 209 18 33 chr13 31817999 31818329 -70054840 - MLT1F LTR MaLR 0 542 218 310 303 62 56 chr13 31818700 31818895 -70054274 + L2 LINE L2 1825 2020 -1294 4323 176 56 60 chr13 31819713 31821489 -70051680 - L1MB7 LINE L1 -5 6179 4433 378 77 0 0 chr13 31821489 31821541 -70051628 - L1MA6 LINE L1 -3 6297 6246 4323 176 56 60 chr13 31821541 31821784 -70051385 - L1MB7 LINE L1 -1751 4433 4190 1372 230 53 98 chr13 31822519 31822600 -70050569 + LTR40a LTR ERVL 1 84 -435 2210 104 17 0 chr13 31822600 31822911 -70050258 - AluSc SINE Alu 0 309 1 2367 107 0 0 chr13 31822912 31823212 -70049957 - AluSx SINE Alu -12 300 1 1372 230 53 98 chr13 31823212 31823343 -70049826 + LTR40a LTR ERVL 84 219 -300 1591 172 92 0 chr13 31823343 31823616 -70049553 + AluJo SINE Alu 1 298 -14 1372 230 53 98 chr13 31823616 31823891 -70049278 + LTR40a LTR ERVL 219 469 -50 422 269 45 32 chr13 31823901 31824057 -70049112 - MER5B DNA MER1_type -20 158 1 3976 101 2 0 chr13 31825627 31826153 -70047016 + MER1A DNA MER1_type 1 527 0 453 266 121 85 chr13 31826331 31826696 -70046473 + MLT1K LTR MaLR 184 561 -27 503 208 167 46 chr13 31827872 31828088 -70045081 - LTR33A LTR ERVL -6 515 254 317 263 97 59 chr13 31828163 31828349 -70044820 - LTR33A LTR ERVL -258 265 73 710 217 53 0 chr13 31829884 31830073 -70043096 - LTR54 LTR ERV1 -7 503 305 737 88 20 0 chr13 31830076 31830178 -70042991 - LTR54B LTR ERV1 -394 104 1 3050 108 9 14 chr13 31830207 31830641 -70042528 - MSTB1 LTR MaLR 0 432 1 2284 107 3 0 chr13 31830892 31831190 -70041979 + AluSp SINE Alu 1 299 -14 1942 153 40 20 chr13 31831219 31831565 -70041604 - MLT1B LTR MaLR -37 353 1 484 280 35 67 chr13 31831595 31831877 -70041292 + L1ME LINE L1 5551 5823 -298 2421 97 0 3 chr13 31831888 31832199 -70040970 + AluSg SINE Alu 1 310 0 2397 87 0 3 chr13 31832487 31832786 -70040383 + AluSq SINE Alu 1 298 -15 2158 216 30 0 chr13 31833618 31834054 -70039115 - MER110 LTR ERV1 0 491 43 1065 234 8 0 chr13 31834266 31834514 -70038655 + MIR SINE MIR 13 262 0 2054 129 63 24 chr13 31835223 31835586 -70037583 + THE1C LTR MaLR 1 375 0 377 272 39 0 chr13 31835691 31835794 -70037375 - MLT1L LTR MaLR -361 254 148 302 229 60 0 chr13 31835880 31835963 -70037206 - MIR SINE MIR -71 191 104 * 739 286 36 0 chr13 31835960 31836184 -70036985 - MIR SINE MIR -2 260 29 750 258 149 69 chr13 31837062 31838019 -70035150 + LTR27 LTR ERV1 7 1755 0 254 72 29 43 chr13 31838042 31838111 -70035058 + (TTTTA)n Simple_repeat Simple_repeat 2 69 0 192 264 0 0 chr13 31838637 31838690 -70034479 + L2 LINE L2 3261 3313 0 2041 189 17 3 chr13 31838928 31839288 -70033881 - MLT1A1 LTR MaLR 0 365 1 207 375 0 0 chr13 31839728 31839816 -70033353 - L3b LINE CR1 -324 1259 1172 1055 82 0 7 chr13 31839881 31840027 -70033142 - L1PB1 LINE L1 -2 6149 6005 1913 138 33 74 chr13 31842207 31842377 -70030792 + THE1C LTR MaLR 1 176 -199 195 42 0 0 chr13 31842377 31842401 -70030768 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2122 108 0 0 chr13 31842403 31842682 -70030487 - AluY SINE Alu -32 279 1 1913 138 33 74 chr13 31842682 31842899 -70030270 + THE1C LTR MaLR 177 375 0 351 209 58 0 chr13 31843411 31843497 -70029672 - L2 LINE L2 -13 3259 3169 800 226 80 19 chr13 31845501 31845713 -70027456 + MIR SINE MIR 20 244 -18 276 306 28 46 chr13 31846356 31846464 -70026705 - L2 LINE L2 -1 3271 3166 1122 276 121 35 chr13 31846466 31846952 -70026217 - LTR67 LTR ERVL -12 545 18 294 422 14 0 chr13 31847044 31847262 -70025907 - L2 LINE L2 -189 3083 2863 * 333 263 0 0 chr13 31847259 31847335 -70025834 + MER5A DNA MER1_type 114 189 0 4079 234 133 56 chr13 31847336 31848979 -70024190 - HAL1 LINE L1 -171 2336 567 534 16 0 0 chr13 31848982 31849045 -70024124 + (TG)n Simple_repeat Simple_repeat 2 64 0 2305 181 102 40 chr13 31849053 31849424 -70023745 - MLT1F LTR MaLR -3 539 128 1898 56 0 0 chr13 31849424 31849638 -70023531 + AluY SINE Alu 84 297 -14 2305 181 102 40 chr13 31849638 31849768 -70023401 - MLT1F LTR MaLR -414 128 7 1509 287 88 20 chr13 31849794 31850352 -70022817 - HAL1 LINE L1 -1907 600 5 283 269 43 21 chr13 31850641 31850734 -70022435 - MER65A LTR ERV1 -350 95 1 2446 74 0 0 chr13 31851046 31851342 -70021827 + AluSg SINE Alu 1 296 -14 243 277 69 30 chr13 31851642 31851743 -70021426 + MIR3 SINE MIR 98 202 -6 291 338 12 23 chr13 31853454 31853653 -70019516 + MIR SINE MIR 20 212 -50 529 237 97 14 chr13 31856059 31856381 -70016788 + L1ME2 LINE L1 5584 5951 -213 291 211 32 11 chr13 31856673 31856768 -70016401 + GA-rich Low_complexity Low_complexity 1 97 0 384 59 0 0 chr13 31857120 31857171 -70015998 + (TG)n Simple_repeat Simple_repeat 1 51 0 200 295 13 0 chr13 31857201 31857279 -70015890 + L2 LINE L2 2407 2485 -829 183 352 0 14 chr13 31858226 31858297 -70014872 + L2 LINE L2 3200 3269 -3 1787 199 73 11 chr13 31858956 31859393 -70013776 - L1M4c LINE L1 -4876 1770 1307 2019 176 44 63 chr13 31859414 31859892 -70013277 - L1MA9 LINE L1 -103 6209 5741 304 218 35 46 chr13 31859975 31860062 -70013107 - L1MC4 LINE L1 -1340 6702 6617 189 171 0 0 chr13 31860077 31860112 -70013057 + (TA)n Simple_repeat Simple_repeat 2 36 0 2931 195 51 111 chr13 31860129 31860173 -70012996 - L1M4c LINE L1 -5271 1271 1226 1752 161 23 20 chr13 31860173 31860472 -70012697 - AluJb SINE Alu -12 300 1 2931 195 51 111 chr13 31860472 31860628 -70012541 - L1M4c LINE L1 -5316 1226 1062 1918 121 7 36 chr13 31860628 31860935 -70012234 + AluJo SINE Alu 1 298 -14 2931 195 51 111 chr13 31860935 31861276 -70011893 - L1M4c LINE L1 -5480 1062 702 417 20 0 0 chr13 31861276 31861326 -70011843 + (TG)n Simple_repeat Simple_repeat 2 51 0 2931 195 51 111 chr13 31861326 31861787 -70011382 - L1M4c LINE L1 -5840 702 328 1406 177 44 51 chr13 31861891 31862219 -70010950 + MER61B LTR ERV1 2 425 0 2676 244 63 24 chr13 31862219 31863400 -70009769 - L1MEc LINE L1 -3143 2986 1796 232 324 80 6 chr13 31863411 31863587 -70009582 - L1MEc LINE L1 -4579 1731 1543 331 253 141 32 chr13 31863920 31864169 -70009000 - L1MEc LINE L1 -4755 1555 1280 2297 192 75 105 chr13 31864204 31864919 -70008250 + LTR8A LTR ERV1 34 727 0 305 289 59 40 chr13 31864937 31865311 -70007858 - L1MEc LINE L1 -4909 1210 830 715 262 58 9 chr13 31866027 31866252 -70006917 - MIR SINE MIR -3 259 24 806 209 118 24 chr13 31866857 31867144 -70006025 - L1ME4a LINE L1 -2 6119 5806 2220 156 62 29 chr13 31867202 31867394 -70005775 + Tigger2a DNA MER2_type 3 187 -2521 2261 118 0 10 chr13 31867394 31867708 -70005461 - AluSx SINE Alu -1 311 1 2220 156 62 29 chr13 31867708 31867933 -70005236 + Tigger2a DNA MER2_type 187 434 0 2267 73 13 13 chr13 31867935 31868235 -70004934 - AluSq SINE Alu -13 300 1 246 238 79 0 chr13 31868392 31868455 -70004714 + L2 LINE L2 3191 3258 -55 2332 265 18 8 chr13 31868458 31869010 -70004159 + L1MC4 LINE L1 5269 5829 -1979 2340 119 0 0 chr13 31869010 31869320 -70003849 + AluSg SINE Alu 1 310 0 2332 265 18 8 chr13 31869320 31869383 -70003786 + L1MC4 LINE L1 5829 5890 -1918 1470 178 12 10 chr13 31869400 31869748 -70003421 - AluJo SINE Alu -30 282 32 227 263 35 0 chr13 31870170 31870227 -70002942 + L1MC4 LINE L1 6708 6766 -1276 34 24 0 0 chr13 31870257 31870298 -70002871 + AT_rich Low_complexity Low_complexity 1 41 0 279 240 0 27 chr13 31870637 31870712 -70002457 + L1M4 LINE L1 4548 4620 -1526 811 188 61 18 chr13 31870729 31870894 -70002275 - AluJo SINE Alu -136 176 5 1651 182 82 0 chr13 31871321 31871650 -70001519 - L1MB2 LINE L1 -1 6170 5815 248 259 190 9 chr13 31872468 31872584 -70000585 + MIR SINE MIR 28 164 -98 398 278 8 24 chr13 31872622 31872748 -70000421 + LTR33A LTR ERVL 343 466 -57 713 216 0 0 chr13 31873212 31873334 -69999835 - Tigger3b DNA MER2_type -2 1229 1108 1817 143 82 10 chr13 31873334 31873627 -69999542 - MER1B DNA MER1_type 0 339 26 * 3619 102 39 47 chr13 31873618 31874584 -69998585 - Tigger3b DNA MER2_type -143 1088 1 264 258 144 0 chr13 31874722 31874819 -69998350 + MER96 DNA MER1_type? 57 167 -8 364 274 67 0 chr13 31874919 31875054 -69998115 + MER5A DNA MER1_type 1 144 -45 343 319 57 6 chr13 31875135 31875292 -69997877 - L3 LINE CR1 -149 1428 1264 240 214 0 0 chr13 31876577 31876633 -69996536 + (TA)n Simple_repeat Simple_repeat 2 57 0 758 199 112 15 chr13 31876729 31876925 -69996244 - MER20 DNA MER1_type -4 215 1 393 302 47 19 chr13 31877633 31877848 -69995321 + L1ME LINE L1 5348 5568 -594 445 132 13 0 chr13 31880415 31880491 -69992678 + MIR SINE MIR 77 153 -109 389 239 74 1 chr13 31880672 31880776 -69992393 + MIR SINE MIR 37 146 -62 453 290 68 14 chr13 31881792 31881999 -69991170 + MIR SINE MIR 33 250 -12 241 262 36 0 chr13 31882020 31882104 -69991065 + MIR SINE MIR 59 145 -117 307 194 15 0 chr13 31883140 31883207 -69989962 + L2 LINE L2 3228 3295 -18 213 316 67 31 chr13 31883851 31884076 -69989093 + L2 LINE L2 2745 2977 -337 755 243 151 61 chr13 31884104 31884451 -69988718 + L1MC4 LINE L1 7121 7505 -303 1743 163 138 9 chr13 31884451 31884800 -69988369 - MSTD LTR MaLR -2 394 1 755 243 151 61 chr13 31884800 31884992 -69988177 + L1MC4 LINE L1 7505 7678 -130 2330 79 7 16 chr13 31885313 31885618 -69987551 + AluSc SINE Alu 1 302 -7 243 280 159 24 chr13 31887641 31887848 -69985321 + L2 LINE L2 2859 3093 -179 1755 174 7 13 chr13 31889391 31889690 -69983479 - AluJo SINE Alu -13 299 3 380 305 34 56 chr13 31890217 31890450 -69982719 - MIR SINE MIR -1 261 34 1124 206 128 7 chr13 31890543 31890825 -69982344 - MER34 LTR ERV1 0 542 227 661 210 32 124 chr13 31891280 31891406 -69981763 + L1MC5 LINE L1 6820 6956 -1005 2026 144 34 3 chr13 31891406 31891732 -69981437 + L1MC1 LINE L1 5998 6333 0 2336 96 6 13 chr13 31891742 31892056 -69981113 + AluSq SINE Alu 1 312 -1 661 210 32 124 chr13 31892056 31892474 -69980695 + L1MC5 LINE L1 6965 7224 -737 597 284 83 53 chr13 31892650 31893157 -69980012 + L1MC5 LINE L1 7311 7832 -129 340 281 42 21 chr13 31893562 31893725 -69979444 + MIR SINE MIR 53 216 -46 386 296 25 26 chr13 31894984 31895144 -69978025 + MIR3 SINE MIR 2 160 -48 567 210 34 0 chr13 31895158 31895277 -69977892 - L1MA9 LINE L1 -22 6290 6168 192 40 0 0 chr13 31895278 31895303 -69977866 + (TG)n Simple_repeat Simple_repeat 1 25 0 261 0 0 0 chr13 31895307 31895336 -69977833 + (GA)n Simple_repeat Simple_repeat 2 30 0 1550 172 12 16 chr13 31895341 31895662 -69977507 + MLT1A1 LTR MaLR 12 365 0 203 129 32 177 chr13 31895662 31895724 -69977445 + MIR3 SINE MIR 145 197 -11 402 21 0 0 chr13 31897675 31897722 -69975447 + (TG)n Simple_repeat Simple_repeat 1 47 0 350 325 8 0 chr13 31897788 31897905 -69975264 - MIR3 SINE MIR -10 198 81 288 300 45 18 chr13 31898828 31898938 -69974231 - MIR SINE MIR -77 131 19 1523 210 108 16 chr13 31899256 31899699 -69973470 - L1M4 LINE L1 -2007 4139 3656 2850 0 0 3 chr13 31899707 31900009 -69973160 - AluYa5 SINE Alu -10 301 1 3000 160 57 51 chr13 31900019 31900515 -69972654 - L1MB7 LINE L1 0 6184 5692 6570 112 84 26 chr13 31900515 31901675 -69971494 + Tigger3b DNA MER2_type 3 1230 -1 3000 160 57 51 chr13 31901675 31901826 -69971343 - L1MB7 LINE L1 -492 5692 5529 2223 98 0 7 chr13 31901826 31902151 -69971018 + AluSq SINE Alu 1 323 0 3000 160 57 51 chr13 31902151 31902187 -69970982 - L1MB7 LINE L1 -655 5529 5495 1396 143 70 11 chr13 31902285 31902557 -69970612 - L1MB3 LINE L1 -2 6181 5894 310 91 0 0 chr13 31902557 31902601 -69970568 - AluJo SINE Alu -4 296 253 228 333 29 38 chr13 31903116 31903326 -69969843 + L2 LINE L2 2871 3078 -194 1781 166 4 0 chr13 31903846 31904123 -69969046 - AluJo SINE Alu -34 278 1 183 175 0 25 chr13 31904561 31904601 -69968568 + MIR3 SINE MIR 161 199 -9 1609 163 7 2 chr13 31906693 31906982 -69966187 + MER1B DNA MER1_type 3 339 0 1767 156 14 0 chr13 31908582 31908864 -69964305 - AluJb SINE Alu -26 286 1 1058 167 0 12 chr13 31909193 31909361 -69963808 - FRAM SINE Alu 0 166 1 235 316 41 0 chr13 31910394 31910492 -69962677 + MIR3 SINE MIR 96 197 -11 313 211 92 0 chr13 31912534 31912610 -69960559 - L2 LINE L2 -2 3270 3188 380 267 58 61 chr13 31913039 31913339 -69959830 + L1PA8A LINE L1 5267 5567 -564 2115 108 10 26 chr13 31913653 31913960 -69959209 - AluSx SINE Alu -10 302 1 270 56 0 0 chr13 31913979 31914015 -69959154 + (CA)n Simple_repeat Simple_repeat 2 37 0 278 258 76 38 chr13 31914175 31914307 -69958862 + L1ME4a LINE L1 5955 6091 -30 30 59 0 0 chr13 31915914 31915965 -69957204 + AT_rich Low_complexity Low_complexity 1 51 0 315 223 7 43 chr13 31915968 31916107 -69957062 + T-rich Low_complexity Low_complexity 5 138 0 429 104 0 0 chr13 31916144 31916221 -69956948 + (T)n Simple_repeat Simple_repeat 1 77 0 472 213 41 0 chr13 31917576 31917698 -69955471 + LTR37A LTR ERV1 298 424 -2 1847 183 37 12 chr13 31919273 31919682 -69953487 - Charlie1b DNA MER1_type 0 523 105 21 0 0 0 chr13 31920028 31920049 -69953120 + AT_rich Low_complexity Low_complexity 1 21 0 2483 178 58 17 chr13 31920166 31920645 -69952524 - LTR10B LTR ERV1 0 505 7 1889 164 4 0 chr13 31920793 31921074 -69952095 + AluJb SINE Alu 6 287 -25 1258 234 80 92 chr13 31921613 31922372 -69950797 + MER31-int LTR ERV1 3327 4076 -860 1794 108 112 22 chr13 31922377 31922654 -69950515 + AluSg SINE Alu 9 310 0 234 0 0 0 chr13 31922853 31922879 -69950290 + (T)n Simple_repeat Simple_repeat 1 26 0 558 231 98 69 chr13 31922991 31923337 -69949832 + LTR37A LTR ERV1 19 374 -52 905 203 17 11 chr13 31924031 31924208 -69948961 - MER45A DNA AcHobo 0 178 1 407 273 36 27 chr13 31924895 31925005 -69948164 + L2 LINE L2 3162 3272 0 381 319 29 48 chr13 31925135 31925345 -69947824 - MIR SINE MIR -43 219 14 2405 81 0 0 chr13 31927888 31928184 -69944985 - AluSg SINE Alu -14 296 1 245 319 14 0 chr13 31930064 31930136 -69943033 + MIR SINE MIR 87 159 -103 233 175 0 0 chr13 31930183 31930223 -69942946 + MIR SINE MIR 156 195 -67 22 35 0 0 chr13 31930433 31930462 -69942707 + AT_rich Low_complexity Low_complexity 1 29 0 486 249 266 33 chr13 31930948 31931189 -69941980 + L2 LINE L2 2996 3292 -21 289 229 16 0 chr13 31931333 31931394 -69941775 + MIR SINE MIR 177 238 -24 2414 83 0 0 chr13 31931826 31932127 -69941042 + AluSg SINE Alu 1 301 -9 1103 229 29 12 chr13 31932226 31932466 -69940703 + MIR SINE MIR 19 262 0 357 244 33 0 chr13 31932909 31932999 -69940170 - L2 LINE L2 -9 3263 3171 314 336 149 24 chr13 31933148 31933356 -69939813 + L2 LINE L2 3030 3263 -9 756 180 11 60 chr13 31933894 31934077 -69939092 + L1MB4 LINE L1 6007 6180 0 21 57 0 0 chr13 31934083 31934118 -69939051 + AT_rich Low_complexity Low_complexity 1 35 0 557 343 96 10 chr13 31934750 31935158 -69938011 + L2 LINE L2 2362 2804 -510 2258 117 0 3 chr13 31935280 31935579 -69937590 + AluSx SINE Alu 1 298 -14 180 322 34 17 chr13 31935749 31935808 -69937361 + L2 LINE L2 3197 3256 -57 2086 121 38 0 chr13 31936197 31936486 -69936683 + AluSx SINE Alu 1 300 -12 293 314 55 92 chr13 31937711 31938093 -69935076 + L2 LINE L2 2812 3179 -93 252 330 84 82 chr13 31938143 31938467 -69934702 - L2 LINE L2 -1201 2113 1791 2023 121 15 15 chr13 31938467 31938806 -69934363 + L1MB3 LINE L1 5838 6176 -7 252 330 84 82 chr13 31938806 31939500 -69933669 - L2 LINE L2 -1523 1791 1093 491 291 99 50 chr13 31941004 31941670 -69931499 + L1M4 LINE L1 4417 5115 -1031 235 241 105 8 chr13 31941684 31941817 -69931352 + L1M4 LINE L1 5198 5343 -803 660 148 111 19 chr13 31941856 31942018 -69931151 + MER68 LTR ERV1 1 177 -385 1620 123 104 4 chr13 31942134 31942385 -69930784 - AluSx SINE Alu -36 276 1 1429 138 39 4 chr13 31942385 31942639 -69930530 - L1MB3 LINE L1 -280 5903 5641 2441 246 85 73 chr13 31942649 31943511 -69929658 - L1MEd LINE L1 -2304 4078 3228 439 233 95 0 chr13 31943511 31943522 -69929647 - FLAM_C SINE Alu -182 130 121 17602 46 3 1 chr13 31943522 31946498 -69926671 - L1PA5 LINE L1 -2 6152 3176 439 233 95 0 chr13 31946498 31946602 -69926567 - FLAM_C SINE Alu -191 121 4 2441 246 85 73 chr13 31946602 31947470 -69925699 - L1MEd LINE L1 -3154 3228 2254 1427 220 48 0 chr13 31947470 31947765 -69925404 - AluJo SINE Alu -3 309 1 2441 246 85 73 chr13 31947765 31947793 -69925376 - L1MEd LINE L1 -4128 2254 2228 460 97 0 0 chr13 31947794 31947856 -69925313 + Alu SINE Alu 1 62 -256 1046 119 80 28 chr13 31947857 31948033 -69925136 + AluSg/x SINE Alu 128 312 0 1319 247 72 17 chr13 31948036 31948522 -69924647 - L1MEd LINE L1 -4328 2235 1563 1831 159 4 0 chr13 31948522 31948798 -69924371 + AluJo SINE Alu 6 282 -30 1319 247 72 17 chr13 31948798 31948814 -69924355 - L1MEd LINE L1 -5000 1563 1549 964 321 68 44 chr13 31948846 31949755 -69923414 - L1MEd LINE L1 -5096 1276 346 435 292 111 37 chr13 31949907 31950150 -69923019 + L3 LINE CR1 585 845 -732 1062 139 22 0 chr13 31950211 31950391 -69922778 + L1MA3 LINE L1 6122 6305 0 1438 178 113 106 chr13 31950554 31951092 -69922077 - MLT1F LTR MaLR 0 542 1 26 74 0 0 chr13 31951155 31951209 -69921960 + AT_rich Low_complexity Low_complexity 1 54 0 323 319 11 0 chr13 31951375 31951469 -69921700 + L3 LINE CR1 1245 1339 -238 258 424 93 0 chr13 31951478 31951629 -69921540 + L2 LINE L2 3102 3266 -6 302 246 251 42 chr13 31951649 31951816 -69921353 + L3 LINE CR1 1342 1543 -34 331 294 135 43 chr13 31952056 31952219 -69920950 + MIR SINE MIR 2 179 -83 258 215 31 46 chr13 31952840 31952905 -69920264 + L2 LINE L2 3188 3251 -21 2226 107 10 0 chr13 31953646 31953946 -69919223 - AluSx SINE Alu -9 303 1 303 266 21 11 chr13 31954047 31954141 -69919028 + Zaphod DNA AcHobo 8 102 -3929 22 35 0 0 chr13 31954298 31954327 -69918842 + AT_rich Low_complexity Low_complexity 1 29 0 2404 97 0 0 chr13 31954436 31954735 -69918434 - AluSg SINE Alu -11 299 1 308 279 101 17 chr13 31954900 31954997 -69918172 - L1MC4a LINE L1 -460 5661 5738 2388 81 0 3 chr13 31954997 31955292 -69917877 - AluSp SINE Alu -19 294 1 308 279 101 17 chr13 31955292 31955509 -69917660 - L1MC4a LINE L1 -382 5739 5542 51 86 0 0 chr13 31955813 31955941 -69917228 + AT_rich Low_complexity Low_complexity 1 128 0 312 173 27 27 chr13 31955970 31956087 -69917082 + T-rich Low_complexity Low_complexity 1 117 0 49 18 0 0 chr13 31956123 31956179 -69916990 + AT_rich Low_complexity Low_complexity 1 56 0 351 318 56 17 chr13 31956788 31956967 -69916202 - L1MC4a LINE L1 -809 5337 5152 396 321 16 0 chr13 31957416 31957609 -69915560 - L1MC4a LINE L1 -2303 3843 3648 690 287 121 5 chr13 31957610 31957833 -69915336 + MIR SINE MIR 8 256 -6 692 261 61 48 chr13 31957979 31958134 -69915035 - L1ME4a LINE L1 -223 5898 5747 2004 164 0 3 chr13 31958134 31958433 -69914736 - AluJb SINE Alu -14 298 1 692 261 61 48 chr13 31958433 31958653 -69914516 - L1ME4a LINE L1 -374 5747 5518 227 307 37 32 chr13 31959100 31959289 -69913880 - L1ME4a LINE L1 -1155 4991 4802 42136 37 4 1 chr13 31959453 31965586 -69907583 + L1PA3 LINE L1 1 6153 -2 911 148 60 5 chr13 31965605 31965822 -69907347 - Charlie1 DNA MER1_type -114 2647 2419 473 171 0 0 chr13 31965820 31965902 -69907267 - Charlie1 DNA MER1_type -2621 140 59 * 291 344 5 77 chr13 31967151 31967346 -69905823 - MIR3 SINE MIR -14 194 14 774 261 76 83 chr13 31968204 31968599 -69904570 + L2 LINE L2 2917 3308 -5 38 68 0 0 chr13 31968636 31968709 -69904460 + AT_rich Low_complexity Low_complexity 1 73 0 24 0 0 0 chr13 31968718 31968742 -69904427 + AT_rich Low_complexity Low_complexity 1 24 0 521 284 111 13 chr13 31969418 31969643 -69903526 - MIR SINE MIR 0 262 16 2568 127 35 24 chr13 31970031 31970457 -69902712 + Tigger2a DNA MER2_type 4 434 0 211 301 151 35 chr13 31970913 31971199 -69901970 - L2 LINE L2 -668 2646 2327 930 224 92 4 chr13 31973030 31973258 -69899911 - MIR SINE MIR -10 252 5 280 318 64 18 chr13 31973295 31973405 -69899764 - L2 LINE L2 0 3272 3158 676 194 116 7 chr13 31975218 31975373 -69897796 + MLT1C LTR MaLR 6 177 -290 1730 161 10 10 chr13 31975381 31975680 -69897489 + AluJo SINE Alu 1 299 -13 812 219 0 0 chr13 31975688 31975834 -69897335 + FRAM SINE Alu 1 140 -36 951 206 130 8 chr13 31975874 31976121 -69897048 + MLT1C LTR MaLR 187 463 -4 1291 255 90 14 chr13 31979204 31979823 -69893346 - MER115 DNA AcHobo -1 692 1 6304 146 17 19 chr13 31982854 31983699 -69889470 + L1PB1 LINE L1 4271 5116 -1035 2227 127 0 0 chr13 31983699 31984006 -69889163 + AluSx SINE Alu 1 307 -5 6304 146 17 19 chr13 31984006 31985052 -69888117 + L1PB1 LINE L1 5116 6151 0 444 37 0 0 chr13 31985245 31985299 -69887870 + (TG)n Simple_repeat Simple_repeat 1 54 0 1622 42 0 0 chr13 31985775 31985967 -69887202 + AluYa5 SINE Alu 119 310 -1 301 262 29 84 chr13 31986139 31986392 -69886777 - L1MEd LINE L1 -4924 1195 956 1745 138 17 38 chr13 31986392 31986706 -69886463 - AluJb SINE Alu 0 308 1 301 262 29 84 chr13 31986706 31986726 -69886443 - L1MEd LINE L1 -5163 956 936 2443 80 10 0 chr13 31986789 31987088 -69886081 - AluSc SINE Alu -7 302 1 1160 135 26 10 chr13 31987178 31987371 -69885798 - L1MB4 LINE L1 0 6180 5985 273 333 12 0 chr13 31987494 31987578 -69885591 - L2 LINE L2 -20 3252 3168 327 295 57 0 chr13 31989918 31990023 -69883146 + L2 LINE L2 2207 2317 -997 227 265 86 152 chr13 31990308 31990749 -69882420 + L2 LINE L2 2861 3272 0 1738 174 47 19 chr13 31990980 31991302 -69881867 - MER2 DNA MER2_type 0 345 15 1724 178 33 69 chr13 31991302 31991594 -69881575 - MER7A DNA MER2_type -2692 346 70 1642 167 3 39 chr13 31991594 31991900 -69881269 + AluJo SINE Alu 10 304 -8 1724 178 33 69 chr13 31991900 31991967 -69881202 - MER7A DNA MER2_type -2968 70 2 900 108 15 15 chr13 31992730 31992860 -69880309 + L1PA8A LINE L1 6000 6129 -2 2139 141 0 0 chr13 31992977 31993282 -69879887 + AluSx SINE Alu 1 305 -7 2735 43 3 18 chr13 31993538 31993865 -69879304 - L1PA4 LINE L1 0 6155 5834 39093 49 6 2 chr13 31993865 31998663 -69874506 - L1PA4 LINE L1 -1328 4818 3 6090 227 140 14 chr13 31999104 32001668 -69871501 - L1M4 LINE L1 -1777 4867 1876 2203 188 79 76 chr13 32001681 32002403 -69870766 - L1M4 LINE L1 -5003 1539 816 262 259 24 12 chr13 32002635 32002720 -69870449 - L1M4 LINE L1 -6455 87 2 2119 122 0 0 chr13 32003016 32003340 -69869829 - AluSx SINE Alu 0 324 1 2113 107 10 10 chr13 32004319 32004610 -69868559 - AluSx SINE Alu -21 291 1 26 0 0 0 chr13 32005478 32005504 -69867665 + AT_rich Low_complexity Low_complexity 1 26 0 2185 100 17 10 chr13 32006056 32006379 -69866790 - AluSx SINE Alu 0 312 1 208 111 139 0 chr13 32006815 32006851 -69866318 + L2 LINE L2 3267 3307 -6 577 178 31 0 chr13 32007001 32007106 -69866063 + MER5A DNA MER1_type 4 112 -77 709 175 0 98 chr13 32007128 32007271 -69865898 + FLAM_C SINE Alu 1 129 -4 227 379 0 11 chr13 32007445 32007532 -69865637 - L2 LINE L2 -10 3262 3177 420 357 47 8 chr13 32009012 32009141 -69864028 - L2 LINE L2 -5 3267 3134 226 296 56 28 chr13 32011054 32011162 -69862007 + MIR3 SINE MIR 5 115 -93 2361 67 40 0 chr13 32011993 32012292 -69860877 - AluYa5 SINE Alu 0 311 1 21 0 0 0 chr13 32015404 32015425 -69857744 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 32016984 32017005 -69856164 + AT_rich Low_complexity Low_complexity 1 21 0 180 281 141 0 chr13 32017710 32017774 -69855395 - MIR3 SINE MIR -10 198 126 442 194 39 54 chr13 32018695 32018824 -69854345 + MIR SINE MIR 103 229 -33 192 323 158 0 chr13 32018865 32018998 -69854171 - MIR3 SINE MIR -54 154 1 300 323 21 0 chr13 32019877 32019970 -69853199 + L2 LINE L2 3161 3255 -17 1374 98 25 102 chr13 32019982 32020217 -69852952 + AluSq SINE Alu 10 226 -87 2023 154 40 9 chr13 32020754 32021104 -69852065 - MER46B DNA MER2_type 0 236 1 350 138 31 15 chr13 32021740 32021805 -69851364 - MLT1D LTR MaLR -15 490 425 893 217 35 28 chr13 32023540 32023954 -69849215 - MLT1D LTR MaLR -64 441 1 338 304 62 78 chr13 32024643 32024950 -69848219 + HAL1b LINE L1 1186 6117 -4 258 228 107 60 chr13 32025097 32025246 -69847923 + L1ME4a LINE L1 5964 6119 -2 256 283 22 0 chr13 32025421 32025513 -69847656 + MIR SINE MIR 7 100 -162 343 267 86 9 chr13 32026187 32026292 -69846877 + L1MCa LINE L1 1958 2070 -4356 223 200 44 0 chr13 32026318 32026363 -69846806 - MIR SINE MIR -86 122 76 2305 96 0 0 chr13 32027235 32027547 -69845622 + AluSx SINE Alu 3 314 0 561 291 234 23 chr13 32028699 32029917 -69843252 - L2 LINE L2 -1 3312 1836 1122 226 69 67 chr13 32030859 32031338 -69841831 - L1ME1 LINE L1 -50 6116 5637 332 286 111 8 chr13 32031350 32031476 -69841693 - MIR SINE MIR -74 188 50 237 264 243 0 chr13 32031603 32031751 -69841418 - L2 LINE L2 -167 3105 2922 189 304 18 18 chr13 32032222 32032278 -69840891 + L2 LINE L2 3204 3259 -13 2268 117 0 0 chr13 32032284 32032574 -69840595 + AluSx SINE Alu 1 290 -22 335 213 39 87 chr13 32033018 32033145 -69840024 + MLT1H LTR MaLR 429 549 0 297 252 205 16 chr13 32033225 32033352 -69839817 + MIR SINE MIR 111 261 -1 377 256 84 78 chr13 32034852 32035043 -69838126 + MIR SINE MIR 15 206 -56 347 270 76 45 chr13 32035048 32035316 -69837853 + L1MC4 LINE L1 1948 6994 -159 923 210 60 0 chr13 32035383 32035550 -69837619 + MER45A DNA AcHobo 2 178 0 1838 144 3 52 chr13 32035907 32036213 -69836956 + AluJo SINE Alu 3 293 -19 180 237 0 0 chr13 32036622 32036660 -69836509 - L3 LINE CR1 -2 1575 1538 908 183 21 31 chr13 32036699 32036890 -69836279 - MER5A DNA MER1_type 0 189 1 1058 150 75 4 chr13 32037725 32037965 -69835204 - MER33 DNA MER1_type -34 290 34 333 266 133 21 chr13 32038661 32038804 -69834365 - HAL1b LINE L1 -3 1345 1187 23 33 0 0 chr13 32038810 32038840 -69834329 + AT_rich Low_complexity Low_complexity 1 30 0 4614 144 29 39 chr13 32038948 32039728 -69833441 - L1MB1 LINE L1 -1 6167 5396 2162 121 0 22 chr13 32039728 32040041 -69833128 - AluSx SINE Alu -6 306 1 4614 144 29 39 chr13 32040041 32040161 -69833008 - L1MB1 LINE L1 -772 5396 5276 476 143 0 12 chr13 32041974 32042058 -69831111 + L1MC3 LINE L1 7322 7404 -381 192 200 0 0 chr13 32042719 32042769 -69830400 + (TAA)n Simple_repeat Simple_repeat 1 50 0 668 179 75 12 chr13 32042870 32043043 -69830126 - LTR33A LTR ERVL -46 477 294 316 261 0 11 chr13 32043074 32043162 -69830007 - LTR33 LTR ERVL -317 204 118 181 239 65 22 chr13 32043322 32043368 -69829801 + L2 LINE L2 3175 3222 -50 364 275 55 0 chr13 32043411 32043520 -69829649 - MIR SINE MIR -113 149 35 749 249 12 0 chr13 32044516 32044681 -69828488 + MER45A DNA AcHobo 12 178 0 346 200 352 8 chr13 32045564 32045689 -69827480 + MER5B DNA MER1_type 10 177 -1 693 264 7 0 chr13 32047519 32047674 -69825495 + MER91B DNA MER1_type 24 179 -11 699 260 73 5 chr13 32048325 32048517 -69824652 + MIR SINE MIR 43 247 -15 2280 99 0 3 chr13 32048530 32048823 -69824346 - AluSx SINE Alu -18 294 3 342 0 0 0 chr13 32049507 32049545 -69823624 + (CA)n Simple_repeat Simple_repeat 1 38 0 460 235 206 7 chr13 32049602 32049738 -69823431 + MER5A DNA MER1_type 11 173 -16 554 260 20 14 chr13 32050578 32050724 -69822445 + MER5B DNA MER1_type 29 175 -3 30 0 0 0 chr13 32051343 32051373 -69821796 + GC_rich Low_complexity Low_complexity 1 30 0 448 284 147 0 chr13 32052793 32052990 -69820179 + MIR SINE MIR 31 256 -6 273 214 0 0 chr13 32053272 32053328 -69819841 + MIR SINE MIR 36 91 -117 700 284 116 4 chr13 32053336 32053561 -69819608 - MIR SINE MIR -10 252 3 435 259 19 9 chr13 32053567 32053675 -69819494 + MIR3 SINE MIR 94 202 -6 237 65 0 0 chr13 32053978 32054009 -69819160 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 293 86 21 chr13 32055282 32055428 -69817741 + MIR SINE MIR 22 191 -68 206 240 120 0 chr13 32055436 32055486 -69817683 - L2 LINE L2 -1 3312 3257 * 510 263 46 13 chr13 32055464 32055616 -69817553 - MIR SINE MIR -93 169 13 4197 149 27 19 chr13 32055987 32056732 -69816437 - L1MB3 LINE L1 -2 6181 5431 1939 68 81 0 chr13 32056896 32057144 -69816025 - AluY SINE Alu -17 294 27 307 289 49 88 chr13 32057560 32057631 -69815538 + L1ME4a LINE L1 5847 5919 -202 2518 75 0 3 chr13 32057631 32057937 -69815232 - AluSc SINE Alu -4 305 1 307 289 49 88 chr13 32057937 32058149 -69815020 + L1ME4a LINE L1 5919 6119 -2 694 254 58 55 chr13 32058243 32058640 -69814529 - LTR16A1 LTR ERVL 0 457 60 1307 254 6 3 chr13 32059382 32059712 -69813457 + LTR53 LTR ERVL 189 519 0 1519 171 6 105 chr13 32059894 32060228 -69812941 + AluJo SINE Alu 1 301 -1 217 247 137 0 chr13 32060960 32061033 -69812136 - MER5A DNA MER1_type -105 84 2 550 171 0 0 chr13 32061789 32061871 -69811298 - FRAM SINE Alu -19 157 76 291 71 0 0 chr13 32063979 32064021 -69809148 + (TG)n Simple_repeat Simple_repeat 1 42 0 209 239 84 42 chr13 32065864 32065935 -69807234 - MIR SINE MIR -36 226 153 428 211 55 16 chr13 32065974 32066102 -69807067 + L1ME4a LINE L1 5989 6121 0 383 231 13 0 chr13 32066172 32066250 -69806919 - MIR SINE MIR -111 151 73 186 358 11 32 chr13 32067005 32067100 -69806069 + MIR SINE MIR 154 246 -16 616 222 8 0 chr13 32067246 32067372 -69805797 - MER94 DNA DNA -2 132 6 252 59 0 0 chr13 32069035 32069069 -69804100 + (A)n Simple_repeat Simple_repeat 1 34 0 1838 158 7 17 chr13 32070446 32070743 -69802426 - AluJb SINE Alu -18 294 1 410 260 38 18 chr13 32070835 32071009 -69802160 + MLT1I LTR MaLR 279 409 0 768 144 25 0 chr13 32071718 32071878 -69801291 - L1MB4 LINE L1 0 6180 6017 2136 120 3 3 chr13 32072037 32072338 -69800831 + AluSx SINE Alu 1 301 -11 1012 140 13 0 chr13 32072724 32072874 -69800295 - L1MB5 LINE L1 -13 6161 6010 1537 125 139 52 chr13 32072988 32073275 -69799894 - AluJo SINE Alu 0 312 1 362 312 29 47 chr13 32073651 32073821 -69799348 + MER5A DNA MER1_type 23 189 0 372 291 57 29 chr13 32074613 32074788 -69798381 + MIR3 SINE MIR 20 199 -9 794 246 73 103 chr13 32075042 32075586 -69797583 + MLT1K LTR MaLR 29 556 -32 911 236 89 4 chr13 32075953 32076503 -69796666 + MER45B DNA AcHobo 1 707 -333 392 309 29 15 chr13 32077293 32077429 -69795740 + MIR SINE MIR 4 141 -121 308 333 45 13 chr13 32077787 32077943 -69795226 - L1 LINE L1 -1227 4919 4759 547 280 10 55 chr13 32077955 32078155 -69795014 + MIR SINE MIR 1 191 -71 219 341 121 0 chr13 32078301 32078392 -69794777 + L2 LINE L2 3197 3298 -15 1179 134 0 6 chr13 32078525 32078689 -69794480 + AluSx SINE Alu 1 163 -149 2147 103 3 23 chr13 32078926 32079236 -69793933 - AluSx SINE Alu -4 308 5 336 343 72 25 chr13 32079588 32079824 -69793345 + MIR SINE MIR 6 252 -10 1432 200 11 0 chr13 32080739 32081019 -69792150 + L1M4 LINE L1 4788 5070 -1076 303 242 0 0 chr13 32081022 32081084 -69792085 + MER5A DNA MER1_type 128 189 0 3808 114 49 0 chr13 32081533 32082061 -69791108 - MER41C LTR ERV1 0 554 1 212 358 166 19 chr13 32082103 32082410 -69790759 - L2 LINE L2 -471 2843 2492 233 235 115 95 chr13 32084315 32084515 -69788654 - L1MC5 LINE L1 -52 7909 7706 2157 89 0 4 chr13 32084565 32084834 -69788335 + AluSq SINE Alu 1 268 -45 1940 115 14 7 chr13 32085067 32085366 -69787803 - AluSg SINE Alu 0 301 1 2360 92 0 16 chr13 32085636 32085953 -69787216 + AluSq SINE Alu 2 313 0 323 282 161 17 chr13 32086480 32086654 -69786515 - MLT1L LTR MaLR -4 611 413 252 263 189 53 chr13 32086655 32086883 -69786286 + L1ME4a LINE L1 5863 6121 0 197 100 50 0 chr13 32086884 32086924 -69786245 + A-rich Low_complexity Low_complexity 2 43 0 289 246 15 0 chr13 32087677 32087742 -69785427 - MIR3 SINE MIR -21 187 122 6441 170 104 47 chr13 32088042 32089031 -69784138 + MER52A LTR ERV1 2 1194 -561 2096 112 6 48 chr13 32089031 32089345 -69783824 + AluSq SINE Alu 1 301 -12 6441 170 104 47 chr13 32089345 32089940 -69783229 + MER52A LTR ERV1 1194 1754 -1 332 314 69 19 chr13 32090306 32090465 -69782704 - MIR SINE MIR -76 186 20 1151 251 93 46 chr13 32091484 32092255 -69780914 + L2 LINE L2 2524 3310 -3 389 200 24 0 chr13 32093231 32093316 -69779853 - MIR SINE MIR -62 200 114 302 271 12 0 chr13 32093400 32093485 -69779684 - MER94 DNA DNA -5 129 44 2143 138 0 0 chr13 32093557 32093861 -69779308 + AluSx SINE Alu 1 304 -8 495 278 54 58 chr13 32094413 32094750 -69778419 - L1MC/D LINE L1 -537 5584 5255 26 0 0 0 chr13 32094846 32094872 -69778297 + AT_rich Low_complexity Low_complexity 1 26 0 1865 177 0 0 chr13 32094873 32095167 -69778002 - 7SLRNA srpRNA srpRNA -21 299 6 318 271 56 42 chr13 32095678 32095822 -69777347 + MIR SINE MIR 117 262 0 2385 97 3 0 chr13 32096671 32096980 -69776189 - AluSx SINE Alu -1 311 2 1310 44 6 0 chr13 32097115 32097273 -69775896 - L1PA4 LINE L1 0 6155 5997 606 242 66 74 chr13 32097545 32097789 -69775380 - MER112 DNA MER1_type -13 247 6 323 237 88 79 chr13 32098148 32098262 -69774907 - MIR3 SINE MIR -52 156 42 281 248 186 18 chr13 32100076 32100189 -69772980 + L2 LINE L2 3182 3313 0 189 298 0 0 chr13 32100197 32100244 -69772925 - L3 LINE CR1 -7 1570 1524 336 298 105 0 chr13 32100380 32100504 -69772665 - L2 LINE L2 -2 3311 3175 702 103 47 9 chr13 32101253 32101360 -69771809 + HY1 scRNA scRNA 1 111 -1 23 0 0 0 chr13 32101360 32101383 -69771786 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr13 32103105 32103152 -69770017 + GC_rich Low_complexity Low_complexity 1 47 0 5903 72 28 3 chr13 32104446 32105193 -69767976 + MER4E LTR ERV1 1 766 0 275 300 55 9 chr13 32105503 32105613 -69767556 + MIR SINE MIR 72 186 -76 187 265 170 70 chr13 32106533 32106733 -69766436 - L2 LINE L2 -350 2964 2745 246 180 100 110 chr13 32106916 32107016 -69766153 - MLT1K LTR MaLR 0 588 490 217 237 34 0 chr13 32107207 32107266 -69765903 + MIR SINE MIR 180 240 -22 756 305 77 0 chr13 32107292 32107538 -69765631 + L2 LINE L2 974 1238 -2076 596 246 134 88 chr13 32107544 32107564 -69765605 + L2 LINE L2 1392 1410 -1904 2419 86 3 0 chr13 32107564 32107867 -69765302 + AluSx SINE Alu 1 304 -8 596 246 134 88 chr13 32107867 32108153 -69765016 + L2 LINE L2 1410 1720 -1594 1760 166 7 10 chr13 32108153 32108455 -69764714 + AluJb SINE Alu 4 304 -8 596 246 134 88 chr13 32108455 32108521 -69764648 + L2 LINE L2 1720 1782 -1532 366 287 82 62 chr13 32108674 32108918 -69764251 - MIR SINE MIR -8 254 6 308 240 199 14 chr13 32109120 32109260 -69763909 - MIR SINE MIR -78 130 3 1187 128 51 36 chr13 32109372 32109568 -69763601 + MER3 DNA MER1_type 7 205 -4 709 253 68 14 chr13 32109996 32110217 -69762952 + Charlie8 DNA MER1_type 43 275 -2142 298 217 0 0 chr13 32110249 32110309 -69762860 + Charlie8 DNA MER1_type 1368 1427 -990 307 324 9 0 chr13 32110335 32110440 -69762729 - MIR SINE MIR -56 206 101 1605 135 107 38 chr13 32111527 32111816 -69761353 - AluJo SINE Alu -3 309 1 200 216 198 9 chr13 32112507 32112618 -69760551 - L2 LINE L2 -3 3310 3179 802 112 0 0 chr13 32113542 32113649 -69759520 + AluSg/x SINE Alu 196 302 -10 325 167 90 51 chr13 32114116 32114194 -69758975 - MIR SINE MIR -21 241 161 852 283 35 17 chr13 32114195 32114425 -69758744 + MLT1I LTR MaLR 22 255 -154 458 209 33 0 chr13 32114454 32114545 -69758624 + MLT1I LTR MaLR 316 409 0 1517 217 25 0 chr13 32114747 32115024 -69758145 - AluJb SINE Alu -28 284 1 377 258 144 54 chr13 32115272 32115824 -69757345 - L1MC/D LINE L1 -775 5371 5211 1098 253 30 68 chr13 32116223 32116650 -69756519 + MLT1J LTR MaLR 101 511 0 2337 79 0 3 chr13 32116774 32117064 -69756105 - AluSg SINE Alu -5 305 17 1266 144 0 0 chr13 32117759 32117933 -69755236 - FAM SINE Alu -1 174 1 197 319 64 99 chr13 32118736 32118877 -69754292 + MIR3 SINE MIR 6 141 -67 * 200 178 22 44 chr13 32118845 32118890 -69754279 + MIR SINE MIR 111 154 -108 575 278 150 22 chr13 32118919 32119192 -69753977 - MLT1L LTR MaLR -62 553 246 747 183 41 24 chr13 32119566 32119735 -69753434 + MER20 DNA MER1_type 2 173 -46 2216 116 0 3 chr13 32119764 32120056 -69753113 - AluSx SINE Alu -21 291 1 2579 163 102 4 chr13 32120237 32120697 -69752472 - MLT1D LTR MaLR 0 505 1 378 149 40 14 chr13 32120837 32120911 -69752258 - HsTC2 DNA Tc2 0 1898 1823 319 215 47 47 chr13 32120945 32121052 -69752117 + MLT1H LTR MaLR 3 109 -440 320 197 0 0 chr13 32121261 32121322 -69751847 - HsTC2 DNA Tc2 -1836 62 2 28 0 0 0 chr13 32121686 32121714 -69751455 + AT_rich Low_complexity Low_complexity 1 28 0 204 135 96 39 chr13 32122271 32122323 -69750846 - MIR SINE MIR -44 218 164 299 391 105 0 chr13 32122636 32122769 -69750400 + L2 LINE L2 3126 3272 0 2466 73 0 0 chr13 32123876 32124176 -69748993 - AluSq SINE Alu -13 300 1 1037 254 145 70 chr13 32125070 32125567 -69747602 + L2 LINE L2 2244 2777 -537 768 299 38 44 chr13 32125628 32125735 -69747434 + L2 LINE L2 2949 3055 -258 2006 136 17 13 chr13 32125735 32126037 -69747132 + AluSx SINE Alu 1 303 -9 768 299 38 44 chr13 32126037 32126294 -69746875 + L2 LINE L2 3055 3311 -2 1114 188 46 96 chr13 32126984 32127226 -69745943 - Charlie2a DNA MER1_type -364 2498 2245 1952 125 50 16 chr13 32127226 32127529 -69745640 - AluSq SINE Alu 0 313 1 1114 188 46 96 chr13 32127529 32127754 -69745415 - Charlie2a DNA MER1_type -617 2245 2057 2156 132 6 0 chr13 32127754 32128065 -69745104 - AluSq SINE Alu 0 313 1 1114 188 46 96 chr13 32128065 32128117 -69745052 - Charlie2a DNA MER1_type -805 2057 2004 2874 152 19 10 chr13 32128117 32128677 -69744492 + L1M4 LINE L1 5215 5779 -399 2136 126 10 3 chr13 32128677 32128987 -69744182 + AluSq SINE Alu 1 312 -1 2874 152 19 10 chr13 32128987 32129028 -69744141 + L1M4 LINE L1 5779 5818 -360 1672 202 20 7 chr13 32129031 32129323 -69743846 - AluJo SINE Alu -15 297 2 869 208 167 10 chr13 32129326 32129716 -69743453 - Charlie2a DNA MER1_type -1197 1665 1215 14698 32 4 3 chr13 32129723 32131241 -69741928 - L1PA4 LINE L1 -2 6153 4629 2300 87 0 31 chr13 32131241 32131562 -69741607 - AluY SINE Alu 0 311 1 14698 32 4 3 chr13 32131562 32132597 -69740572 - L1PA4 LINE L1 -1526 4629 3597 34238 55 5 0 chr13 32132744 32137271 -69735898 - L1P LINE L1 -1588 4558 11 450 228 86 0 chr13 32137277 32137439 -69735730 - Charlie2a DNA MER1_type -1638 1224 1049 754 91 0 0 chr13 32137514 32137613 -69735556 + AluSp/q SINE Alu 199 297 -16 1677 232 133 45 chr13 32137616 32138484 -69734685 - Charlie2a DNA MER1_type -1825 1037 94 2151 100 3 13 chr13 32138484 32138785 -69734384 + AluSx SINE Alu 5 302 -10 388 123 62 0 chr13 32138830 32138895 -69734274 - U6 snRNA snRNA -38 69 1 332 296 50 19 chr13 32139525 32139684 -69733485 + MIR SINE MIR 70 233 -29 504 237 46 46 chr13 32140184 32140336 -69732833 - MER5B DNA MER1_type -2 176 25 1680 125 117 23 chr13 32140740 32141083 -69732086 - L1MC1 LINE L1 -1 6332 5958 840 171 0 20 chr13 32141091 32141237 -69731932 - FLAM_C SINE Alu 0 143 1 2818 111 7 7 chr13 32141244 32141687 -69731482 - L1MC1 LINE L1 -366 5967 5525 262 286 0 0 chr13 32142119 32142189 -69730980 - L2 LINE L2 0 3272 3203 289 322 125 29 chr13 32143767 32143975 -69729194 + L2 LINE L2 2633 2860 -454 2125 104 23 16 chr13 32144533 32144840 -69728329 - AluSc SINE Alu 0 309 1 292 328 65 97 chr13 32144858 32145166 -69728003 + L2 LINE L2 2938 3235 -37 269 387 65 0 chr13 32146133 32146319 -69726850 - L2 LINE L2 -552 2762 2565 405 274 14 55 chr13 32146362 32146508 -69726661 + MIR SINE MIR 19 158 -104 290 230 124 26 chr13 32146837 32146950 -69726219 + LTR67 LTR ERVL 434 557 0 257 279 0 0 chr13 32146950 32147018 -69726151 + MIR SINE MIR 161 228 -34 371 332 77 63 chr13 32147328 32147756 -69725413 + L2 LINE L2 2804 3237 -35 570 252 56 26 chr13 32148522 32148756 -69724413 - L1MC4a LINE L1 -1869 5939 5699 446 349 132 24 chr13 32148928 32149269 -69723900 + L2 LINE L2 2895 3272 0 184 125 0 0 chr13 32150135 32150167 -69723002 + L2 LINE L2 3282 3313 0 335 252 5 24 chr13 32150173 32150273 -69722896 + MIR SINE MIR 66 167 -41 2137 149 0 0 chr13 32150321 32150629 -69722540 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr13 32151020 32151051 -69722118 + AT_rich Low_complexity Low_complexity 1 31 0 400 291 0 18 chr13 32151236 32151346 -69721823 - MIR SINE MIR -81 127 20 552 190 29 29 chr13 32151815 32151952 -69721217 - LTR45 LTR ERV1 0 525 389 829 271 132 17 chr13 32152494 32152973 -69720196 + L1MC4a LINE L1 5616 6149 -1659 971 271 98 26 chr13 32152996 32153373 -69719796 - L2 LINE L2 -610 2704 2301 792 243 130 34 chr13 32153798 32154090 -69719079 + MLT1A1 LTR MaLR 1 320 -45 1289 235 62 17 chr13 32154433 32154613 -69718556 - MLT1A2 LTR MaLR -5 369 199 195 42 0 0 chr13 32154613 32154637 -69718532 + (GA)n Simple_repeat Simple_repeat 2 25 0 1289 235 62 17 chr13 32154637 32154809 -69718360 - MLT1A2 LTR MaLR -175 199 1 347 281 79 40 chr13 32154818 32155196 -69717973 + LTR16A LTR ERVL 24 491 0 610 155 0 0 chr13 32155905 32156002 -69717167 - AluJb SINE Alu -7 305 209 33 85 0 0 chr13 32156049 32156131 -69717038 + AT_rich Low_complexity Low_complexity 1 82 0 1751 164 6 32 chr13 32156486 32156798 -69716371 - AluJb SINE Alu -8 304 1 2019 126 0 4 chr13 32157059 32157336 -69715833 + AluSg SINE Alu 1 276 -34 6757 63 17 6 chr13 32157367 32158979 -69714190 + L1PA7 LINE L1 4533 6154 0 625 118 0 0 chr13 32158995 32159088 -69714081 + AluJb SINE Alu 211 303 -9 901 290 60 35 chr13 32159088 32159620 -69713549 - L1ME LINE L1 -314 5807 5265 30 0 0 0 chr13 32159848 32159878 -69713291 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr13 32160148 32160175 -69712994 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr13 32160232 32160254 -69712915 + AT_rich Low_complexity Low_complexity 1 22 0 237 286 54 0 chr13 32160294 32160406 -69712763 - L1ME LINE L1 -1539 4607 4490 1261 206 127 0 chr13 32160470 32160737 -69712432 - AluJo SINE Alu -1 301 1 216 0 0 0 chr13 32161060 32161084 -69712085 + (CA)n Simple_repeat Simple_repeat 2 25 0 636 327 48 16 chr13 32162220 32162468 -69710701 + MIR SINE MIR 5 260 -2 1186 244 102 36 chr13 32162811 32163446 -69709723 + L2 LINE L2 2636 3313 0 1770 119 8 23 chr13 32163560 32163820 -69709349 + AluSq SINE Alu 43 298 -15 2109 113 30 7 chr13 32164603 32164905 -69708264 - AluSg1 SINE Alu 0 309 1 403 299 44 101 chr13 32166034 32166321 -69706848 - L2 LINE L2 -2 3270 3015 2282 113 7 0 chr13 32166321 32166631 -69706538 + AluSx SINE Alu 1 312 0 403 299 44 101 chr13 32166631 32166728 -69706441 - L2 LINE L2 -257 3015 2914 870 141 0 15 chr13 32167458 32167593 -69705576 - FLAM_C SINE Alu 0 133 1 230 241 172 0 chr13 32167687 32167774 -69705395 - MIR3 SINE MIR -10 198 97 800 253 89 32 chr13 32167838 32168209 -69704960 - LTR16A LTR ERVL -7 443 52 21 0 0 0 chr13 32168410 32168431 -69704738 + AT_rich Low_complexity Low_complexity 1 21 0 1997 103 3 52 chr13 32168464 32168774 -69704395 - AluSx SINE Alu -17 295 1 1940 160 0 0 chr13 32170514 32170801 -69702368 + AluJb SINE Alu 1 287 -25 17531 59 5 1 chr13 32171788 32175269 -69697900 - L1PA6 LINE L1 -1 6153 2660 304 135 0 19 chr13 32175662 32175714 -69697455 + L2 LINE L2 3258 3308 -5 1043 168 245 7 chr13 32176282 32176592 -69696577 - L1MB8 LINE L1 0 6178 5795 975 215 27 9 chr13 32177360 32177579 -69695590 + MER58A DNA MER1_type 1 223 -1 276 155 62 70 chr13 32177646 32177775 -69695394 + Charlie7 DNA MER1_type 2444 2571 -41 24 0 0 0 chr13 32178218 32178242 -69694927 + AT_rich Low_complexity Low_complexity 1 24 0 368 311 88 7 chr13 32179959 32180107 -69693062 + L2 LINE L2 2597 2756 -558 210 71 0 0 chr13 32180711 32180739 -69692430 + (TG)n Simple_repeat Simple_repeat 2 29 0 284 284 134 8 chr13 32181007 32181134 -69692035 - L3b LINE CR1 -85 1498 1356 548 305 17 28 chr13 32181266 32181443 -69691726 + MER5B DNA MER1_type 4 178 0 195 42 0 0 chr13 32182457 32182481 -69690688 + (A)n Simple_repeat Simple_repeat 1 24 0 303 162 0 95 chr13 32182673 32182747 -69690422 - MIR SINE MIR -82 180 114 339 244 12 0 chr13 32182750 32182836 -69690333 + MER46C DNA MER2_type 251 337 -1 274 263 121 0 chr13 32182836 32182935 -69690234 + MIR SINE MIR 152 262 0 229 370 161 0 chr13 32183438 32183630 -69689539 - L2 LINE L2 -927 2387 2165 718 11 0 21 chr13 32184213 32184306 -69688863 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 1872 107 61 0 chr13 32184307 32184569 -69688600 - AluSx SINE Alu -34 278 1 261 0 0 0 chr13 32185161 32185190 -69687979 + (A)n Simple_repeat Simple_repeat 1 29 0 873 228 50 15 chr13 32185809 32186011 -69687158 + MER63A DNA MER1_type 2 210 0 231 239 14 14 chr13 32186076 32186147 -69687022 + LTR33 LTR ERVL 382 452 -69 1486 177 90 153 chr13 32186238 32186815 -69686354 + MLT1F LTR MaLR 2 542 0 375 264 78 82 chr13 32187132 32187363 -69685806 + L2 LINE L2 2844 3073 -199 398 201 173 36 chr13 32187505 32187644 -69685525 + L2 LINE L2 3155 3312 -1 630 279 119 10 chr13 32187649 32187850 -69685319 + MIR SINE MIR 28 250 -12 550 255 106 16 chr13 32190127 32190315 -69682854 + L3 LINE CR1 1371 1575 -2 342 311 42 17 chr13 32190375 32190494 -69682675 + MER5B DNA MER1_type 55 176 -2 31 58 0 0 chr13 32191273 32191325 -69681844 + AT_rich Low_complexity Low_complexity 1 52 0 1165 206 125 22 chr13 32191382 32191742 -69681427 - MLT2C1 LTR ERVL 0 397 1 353 256 240 0 chr13 32191883 32192004 -69681165 + MIR3 SINE MIR 48 197 -11 408 266 196 5 chr13 32192236 32192450 -69680719 - MLT1K LTR MaLR -10 578 324 2816 170 33 2 chr13 32192930 32193441 -69679728 + MER44D DNA MER2_type 1 582 -23 689 95 0 0 chr13 32193445 32193550 -69679619 + L1PA10 LINE L1 5464 5568 -606 2427 78 6 6 chr13 32193550 32193879 -69679290 + L1PA10 LINE L1 5834 6168 0 1589 194 8 26 chr13 32193896 32194247 -69678922 - L1M3 LINE L1 -399 5784 5440 266 338 0 0 chr13 32194576 32194644 -69678525 - MIR SINE MIR -84 124 57 502 168 11 0 chr13 32194701 32194796 -69678373 + MLT1A1 LTR MaLR 3 98 -298 399 228 43 0 chr13 32194794 32194886 -69678283 + MLT1J LTR MaLR 311 406 -105 * 649 203 71 78 chr13 32194911 32195192 -69677977 + MLT1A1 LTR MaLR 87 365 0 2378 70 0 0 chr13 32195512 32195821 -69677348 - AluY SINE Alu 0 309 1 2080 118 4 0 chr13 32196124 32196404 -69676765 + AluSc SINE Alu 14 294 -15 2568 7 0 0 chr13 32196542 32196825 -69676344 - AluYb8 SINE Alu -35 283 1 324 22 22 0 chr13 32197461 32197507 -69675662 + MADE1 DNA Mariner 34 80 0 268 174 101 0 chr13 32197863 32197932 -69675237 + LTR33 LTR ERVL 2 77 -444 444 220 139 17 chr13 32198119 32198292 -69674877 + LTR33 LTR ERVL 328 521 0 15552 101 17 17 chr13 32199026 32201494 -69671675 - L1P LINE L1 -3237 2909 442 2405 184 16 11 chr13 32201992 32202444 -69670725 + MLT2B2 LTR ERVL 1 454 -61 2042 159 72 0 chr13 32202444 32202803 -69670366 + MSTB LTR MaLR 1 385 -41 677 156 65 65 chr13 32202905 32203088 -69670081 + AluSg/x SINE Alu 132 314 0 629 220 8 0 chr13 32203464 32203582 -69669587 - FLAM_A SINE Alu -14 119 1 253 312 75 0 chr13 32203867 32203960 -69669209 - MIR3 SINE MIR -11 197 98 22 35 0 0 chr13 32204039 32204068 -69669101 + AT_rich Low_complexity Low_complexity 1 29 0 1791 138 90 16 chr13 32204288 32204600 -69668569 - MER1B DNA MER1_type 0 337 3 183 270 0 0 chr13 32204612 32204649 -69668520 - L2 LINE L2 -216 3056 3020 2155 88 37 30 chr13 32204722 32205018 -69668151 + AluSq SINE Alu 1 298 -15 1990 140 0 0 chr13 32205050 32205335 -69667834 + AluSx SINE Alu 12 296 -16 278 295 84 0 chr13 32205705 32205800 -69667369 + MIR SINE MIR 85 187 -75 546 278 91 37 chr13 32205934 32206175 -69666994 + MIR SINE MIR 8 261 -1 3347 133 93 10 chr13 32206270 32206896 -69666273 - Tigger3(Golem) DNA MER2_type 0 3028 2338 1956 82 26 65 chr13 32206896 32207202 -69665967 - AluY SINE Alu -17 294 1 3347 133 93 10 chr13 32207202 32207266 -69665903 - Tigger3(Golem) DNA MER2_type -690 2338 2281 486 221 25 25 chr13 32207249 32207371 -69665798 - Tigger3(Golem) DNA MER2_type -2907 122 1 * 250 302 101 36 chr13 32208491 32208630 -69664539 - MIR SINE MIR -71 191 44 996 182 6 0 chr13 32209017 32209187 -69663982 - FRAM SINE Alu -6 170 1 1891 177 3 0 chr13 32210022 32210316 -69662853 + 7SLRNA srpRNA srpRNA 3 297 -23 218 186 51 51 chr13 32210318 32210377 -69662792 - MIR SINE MIR -61 147 89 287 314 59 25 chr13 32210753 32210989 -69662180 - L1ME LINE L1 -302 5819 5576 1239 165 4 22 chr13 32211462 32211692 -69661477 - AluJb SINE Alu -1 311 86 2236 59 0 3 chr13 32211903 32212193 -69660976 + L1P2 LINE L1 5495 5783 -371 20349 67 2 0 chr13 32212203 32214923 -69658246 + L1P LINE L1 9 2734 -3412 21426 53 13 5 chr13 32215023 32217938 -69655231 - L1P LINE L1 -2954 3192 253 2248 119 7 0 chr13 32218088 32218391 -69654778 - AluSx SINE Alu -7 305 1 355 339 58 17 chr13 32218710 32218884 -69654285 + MIR SINE MIR 34 214 -48 2423 85 3 7 chr13 32219251 32219558 -69653611 + AluSg SINE Alu 1 306 -4 22 0 0 0 chr13 32219634 32219656 -69653513 + AT_rich Low_complexity Low_complexity 1 22 0 339 358 58 0 chr13 32220846 32220966 -69652203 - MIR3 SINE MIR -32 176 50 219 340 52 21 chr13 32221160 32221257 -69651912 - L2 LINE L2 -32 3240 3141 448 270 44 44 chr13 32222789 32222948 -69650221 + L2 LINE L2 3107 3265 -48 228 326 52 56 chr13 32223061 32223328 -69649841 - L2 LINE L2 -180 3092 2827 30 27 0 0 chr13 32223584 32223621 -69649548 + AT_rich Low_complexity Low_complexity 1 37 0 41 0 0 36 chr13 32223807 32223845 -69649324 + AT_rich Low_complexity Low_complexity 1 38 -16 341 67 0 33 chr13 32223845 32223905 -69649264 - L1PB1 LINE L1 -3 6148 6091 41 0 0 36 chr13 32223905 32223922 -69649247 + AT_rich Low_complexity Low_complexity 38 54 0 15251 34 8 1 chr13 32223922 32226656 -69646513 - L1PA5 LINE L1 -23 6131 3381 737 130 23 148 chr13 32226922 32227138 -69646031 + MER53 DNA DNA 1 189 0 285 270 9 81 chr13 32227141 32227252 -69645917 + L2 LINE L2 3168 3270 -2 1655 164 76 48 chr13 32227471 32227514 -69645655 - MLT1A1 LTR MaLR -1 364 324 2036 117 0 7 chr13 32227514 32227796 -69645373 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr13 32227797 32227821 -69645348 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1655 164 76 48 chr13 32227821 32228129 -69645040 - MLT1A1 LTR MaLR -40 325 1 648 283 108 21 chr13 32228177 32228463 -69644706 + L2 LINE L2 3001 3311 -2 265 339 61 48 chr13 32228592 32228726 -69644443 + L2 LINE L2 2488 2628 -686 1840 159 20 3 chr13 32228726 32229021 -69644148 + AluSx SINE Alu 3 302 -10 265 339 61 48 chr13 32229021 32229116 -69644053 + L2 LINE L2 2628 2720 -594 643 89 0 122 chr13 32229120 32229191 -69643978 - MSTB LTR MaLR 0 432 381 2336 104 3 0 chr13 32229191 32229500 -69643669 + AluSx SINE Alu 1 310 -2 643 89 0 122 chr13 32229500 32229551 -69643618 - MSTB LTR MaLR -51 381 325 1229 216 43 7 chr13 32230470 32230748 -69642421 - MSTB LTR MaLR -138 288 1 1515 231 61 17 chr13 32231049 32231456 -69641713 + HsTC2a DNA Tc2 4 428 -316 267 206 52 41 chr13 32231463 32231560 -69641609 + HsTC2a DNA Tc2 645 742 0 296 268 10 62 chr13 32231647 32231744 -69641425 + L2 LINE L2 3179 3270 -2 408 350 6 28 chr13 32233051 32233231 -69639938 + MER5B DNA MER1_type 3 178 0 7076 166 59 103 chr13 32233608 32235444 -69637725 + MER52A LTR ERV1 1 1755 0 40 21 0 0 chr13 32237334 32237381 -69635788 + GC_rich Low_complexity Low_complexity 1 47 0 36 23 0 0 chr13 32237620 32237663 -69635506 + GC_rich Low_complexity Low_complexity 1 43 0 442 275 144 53 chr13 32238590 32238874 -69634295 - L1M2 LINE L1 -5768 1081 772 188 132 0 26 chr13 32239029 32239067 -69634102 + (TTCCC)n Simple_repeat Simple_repeat 2 38 0 267 31 0 0 chr13 32239241 32239273 -69633896 + (CGG)n Simple_repeat Simple_repeat 1 32 0 2194 97 3 0 chr13 32242925 32243215 -69629954 - AluSp SINE Alu -22 291 1 216 0 0 0 chr13 32243234 32243258 -69629911 + (T)n Simple_repeat Simple_repeat 1 24 0 4473 172 57 4 chr13 32243939 32245177 -69627992 - L1MB2 LINE L1 0 6171 4874 321 347 13 38 chr13 32245284 32245477 -69627692 + MIR SINE MIR 23 209 -53 22 35 0 0 chr13 32245565 32245594 -69627575 + AT_rich Low_complexity Low_complexity 1 29 0 20697 84 19 3 chr13 32246058 32249708 -69623461 + L1PA7 LINE L1 2480 6143 -11 1864 136 46 60 chr13 32250011 32250379 -69622790 - MLT2D LTR ERVL -48 366 4 361 274 85 90 chr13 32250670 32250782 -69622387 - MIR SINE MIR -17 245 133 1735 173 0 13 chr13 32250782 32251088 -69622081 + AluJo SINE Alu 1 302 -10 361 274 85 90 chr13 32251088 32251176 -69621993 - MIR SINE MIR -129 133 46 979 239 159 64 chr13 32251409 32251904 -69621265 - L2 LINE L2 -4 3309 2650 604 104 9 264 chr13 32251904 32252124 -69621045 + FRAM SINE Alu 3 166 0 979 239 159 64 chr13 32252124 32252320 -69620849 - L2 LINE L2 -663 2650 2474 671 228 123 33 chr13 32253351 32253562 -69619607 - MIR SINE MIR -5 257 28 290 261 26 83 chr13 32253657 32253860 -69619309 - MER20B DNA MER1_type -16 203 4 264 30 0 0 chr13 32253914 32253947 -69619222 + (TG)n Simple_repeat Simple_repeat 2 34 0 181 250 47 47 chr13 32255664 32255728 -69617441 - L2 LINE L2 0 3313 3250 1557 88 77 25 chr13 32256195 32256480 -69616689 + L1MA5A LINE L1 5998 6297 0 1677 218 84 89 chr13 32256921 32257506 -69615663 - L1ME LINE L1 -386 5780 5191 2438 71 10 0 chr13 32257506 32257802 -69615367 + AluY SINE Alu 1 299 -12 1677 218 84 89 chr13 32257802 32258376 -69614793 - L1ME LINE L1 -975 5191 4616 536 205 83 79 chr13 32258386 32258615 -69614554 - L1ME LINE L1 -1619 4527 4298 573 256 0 16 chr13 32258617 32258742 -69614427 - FLAM_A SINE Alu -14 128 6 807 228 133 78 chr13 32258768 32259278 -69613891 - L1ME LINE L1 -1869 4277 3740 1149 236 8 61 chr13 32259290 32259651 -69613518 - MLT2B1 LTR ERVL -178 342 1 261 316 43 17 chr13 32259668 32259785 -69613384 - MIR3 SINE MIR -6 202 83 22 70 0 0 chr13 32259794 32259837 -69613332 + AT_rich Low_complexity Low_complexity 1 43 0 259 222 14 14 chr13 32259885 32259957 -69613212 + L1MB7 LINE L1 6104 6175 -9 2875 260 58 39 chr13 32260071 32260713 -69612456 + L2 LINE L2 2109 2775 -538 2258 84 10 17 chr13 32260713 32261010 -69612159 + AluSq SINE Alu 3 297 -16 2875 260 58 39 chr13 32261010 32261384 -69611785 + L2 LINE L2 2775 3140 -173 400 236 56 83 chr13 32261772 32261916 -69611253 + MER5B DNA MER1_type 36 175 -3 300 246 14 0 chr13 32262649 32262718 -69610451 - MIR SINE MIR -76 132 63 1309 201 32 29 chr13 32263319 32263667 -69609502 + MLT1A2 LTR MaLR 1 349 -25 914 269 170 17 chr13 32263930 32264342 -69608827 - L2 LINE L2 0 3313 2839 1789 179 60 54 chr13 32264489 32264952 -69608217 - MLT1C LTR MaLR 0 467 2 247 203 0 40 chr13 32266162 32266236 -69606933 - L1MB8 LINE L1 -1 6177 6107 2201 112 3 3 chr13 32266237 32266532 -69606637 - AluSc SINE Alu -14 295 1 207 0 0 0 chr13 32266537 32266560 -69606609 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1143 99 0 13 chr13 32266568 32266719 -69606450 - AluSx SINE Alu -37 275 127 355 189 0 27 chr13 32266742 32266816 -69606353 - AluSx SINE Alu -170 133 62 764 62 0 0 chr13 32266818 32266914 -69606255 - AluS SINE Alu -217 96 1 342 191 53 38 chr13 32266931 32267062 -69606107 - L1MB8 LINE L1 -72 6106 5974 583 152 0 0 chr13 32267930 32268022 -69605147 - Tigger7 DNA MER2_type 0 2587 2496 * 2496 175 39 16 chr13 32268021 32268530 -69604639 - Tigger7 DNA MER2_type -212 521 1 262 157 78 0 chr13 32268867 32268918 -69604251 - MLT2B1 LTR ERVL 0 520 466 1546 147 99 6 chr13 32268924 32269237 -69603932 - MER7A DNA MER2_type -6 340 1 22 56 0 0 chr13 32269496 32269532 -69603637 + AT_rich Low_complexity Low_complexity 1 36 0 1934 138 0 14 chr13 32271186 32271483 -69601686 - AluSx SINE Alu -19 293 1 442 97 75 43 chr13 32272182 32272275 -69600894 - L1MB2 LINE L1 0 6171 6076 26 30 0 0 chr13 32272288 32272321 -69600848 + AT_rich Low_complexity Low_complexity 1 33 0 380 325 38 25 chr13 32272488 32272645 -69600524 - L2 LINE L2 -208 3064 2906 21 36 0 0 chr13 32272653 32272681 -69600488 + AT_rich Low_complexity Low_complexity 1 28 0 531 214 10 0 chr13 32273869 32273967 -69599202 - AluJ/FLAM SINE Alu -213 99 1 562 267 87 101 chr13 32275875 32276126 -69597043 - MLT1J LTR MaLR -70 441 197 2039 111 18 4 chr13 32276126 32276406 -69596763 + AluSq SINE Alu 13 296 -17 562 267 87 101 chr13 32276406 32276600 -69596569 - MLT1J LTR MaLR -314 197 2 3522 139 69 0 chr13 32277004 32277614 -69595555 + Tigger3b DNA MER2_type 10 661 -570 1853 145 16 26 chr13 32277615 32277926 -69595243 - AluJb SINE Alu -3 309 2 353 45 0 0 chr13 32277926 32277970 -69595199 + (TG)n Simple_repeat Simple_repeat 1 44 0 4292 162 58 10 chr13 32278085 32279222 -69593947 + L1MB7 LINE L1 4901 6092 -92 22 0 0 0 chr13 32279787 32279809 -69593360 + AT_rich Low_complexity Low_complexity 1 22 0 2352 119 5 30 chr13 32279812 32280183 -69592986 - THE1B LTR MaLR -2 362 1 384 255 40 0 chr13 32280206 32280346 -69592823 + L1MC4 LINE L1 7900 7995 0 333 0 0 0 chr13 32280661 32280698 -69592471 + (TG)n Simple_repeat Simple_repeat 2 38 0 399 293 122 32 chr13 32281376 32281622 -69591547 - MLT1J LTR MaLR -232 279 12 631 251 104 24 chr13 32281644 32281855 -69591314 - L1MC5 LINE L1 -1122 6839 6612 437 249 126 1 chr13 32281941 32282084 -69591085 + MIR SINE MIR 39 196 -62 181 318 45 68 chr13 32282332 32282508 -69590661 + L2 LINE L2 3117 3288 -25 3346 220 92 29 chr13 32283220 32283953 -69589216 - L1ME1 LINE L1 -5 6161 5476 2231 111 3 0 chr13 32283953 32284260 -69588909 - AluSx SINE Alu -4 308 1 3346 220 92 29 chr13 32284260 32284275 -69588894 - L1ME1 LINE L1 -690 5476 5463 2113 105 0 3 chr13 32284275 32284602 -69588567 - AluSx SINE Alu 0 326 1 3346 220 92 29 chr13 32284602 32285804 -69587365 - L1ME1 LINE L1 -703 5463 4078 278 377 14 7 chr13 32285939 32286085 -69587084 + HsTC2 DNA Tc2 491 637 -1261 561 93 0 0 chr13 32286213 32286343 -69586826 - AluSg/x SINE Alu 0 338 209 387 223 68 10 chr13 32286357 32286460 -69586709 + HsTC2 DNA Tc2 782 890 -1008 231 228 76 43 chr13 32286681 32286773 -69586396 + MIR SINE MIR 167 261 -1 2286 91 0 3 chr13 32287089 32287385 -69585784 + AluSq SINE Alu 3 297 -16 1883 119 72 0 chr13 32287584 32287862 -69585307 - AluSx SINE Alu -14 298 1 560 299 136 71 chr13 32288422 32288597 -69584572 - L2 LINE L2 -237 3035 2873 1770 78 0 4 chr13 32288597 32288828 -69584341 + MER30 DNA MER1_type 1 230 0 560 299 136 71 chr13 32288828 32289681 -69583488 - L2 LINE L2 -399 2873 1911 426 177 51 0 chr13 32289691 32289770 -69583399 - MLT1H1 LTR MaLR -10 545 463 248 313 28 27 chr13 32289797 32289994 -69583175 - MLT1H LTR MaLR -185 370 185 195 200 0 0 chr13 32290540 32290575 -69582594 + L2 LINE L2 3019 3053 -260 1633 162 29 16 chr13 32291309 32291492 -69581677 - AluJo SINE Alu 0 312 133 189 0 0 0 chr13 32291492 32291513 -69581656 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 369 0 0 0 chr13 32291512 32291553 -69581616 + (TG)n Simple_repeat Simple_repeat 2 42 0 1633 162 29 16 chr13 32291513 32291677 -69581492 - AluJo SINE Alu -179 133 1 2226 110 3 0 chr13 32292005 32292315 -69580854 - AluY SINE Alu 0 311 1 494 246 98 0 chr13 32293333 32293455 -69579714 + MIR SINE MIR 129 262 0 26 64 0 0 chr13 32293638 32293685 -69579484 + AT_rich Low_complexity Low_complexity 1 47 0 726 213 84 36 chr13 32293781 32294030 -69579139 + MIR SINE MIR 2 262 0 196 381 48 0 chr13 32294272 32294377 -69578792 + L2 LINE L2 3159 3268 -4 515 286 174 19 chr13 32294988 32295362 -69577807 + L1ME3A LINE L1 4820 5251 -895 2014 104 16 39 chr13 32295362 32295671 -69577498 - MER1B DNA MER1_type 0 339 38 1475 228 89 14 chr13 32295695 32295875 -69577294 + L1ME3A LINE L1 5259 5424 -746 276 77 0 0 chr13 32295875 32295914 -69577255 + (CA)n Simple_repeat Simple_repeat 2 40 0 1475 228 89 14 chr13 32295914 32296172 -69576997 + L1ME3A LINE L1 5424 5730 -440 1157 188 38 0 chr13 32296191 32296404 -69576765 + AluJo SINE Alu 74 294 -18 440 238 131 6 chr13 32296406 32296566 -69576603 + L1ME3A LINE L1 5774 5953 -217 334 333 0 0 chr13 32296584 32296701 -69576468 + L1ME3A LINE L1 6036 6152 -18 780 287 92 20 chr13 32296709 32297252 -69575917 - L1ME3A LINE L1 -297 5873 5292 228 67 0 0 chr13 32297771 32297801 -69575368 + (TG)n Simple_repeat Simple_repeat 1 30 0 652 227 30 78 chr13 32298765 32299034 -69574135 - L1MC5 LINE L1 -438 7523 7268 1866 118 4 0 chr13 32299522 32299776 -69573393 + AluSx SINE Alu 3 257 -55 216 0 0 0 chr13 32299778 32299802 -69573367 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 290 297 63 27 chr13 32300890 32301001 -69572168 - L2 LINE L2 -9 3304 3190 277 305 139 60 chr13 32301778 32302080 -69571089 - L3b LINE CR1 -13 1570 1245 282 249 42 90 chr13 32302086 32302239 -69570930 - L1ME4a LINE L1 0 6121 5977 2382 89 0 0 chr13 32302239 32302542 -69570627 + AluSx SINE Alu 1 303 -9 282 249 42 90 chr13 32302542 32302577 -69570592 - L1ME4a LINE L1 -144 5977 5942 608 289 156 68 chr13 32302720 32303222 -69569947 - L2 LINE L2 -14 3299 2751 672 314 193 19 chr13 32303225 32303760 -69569409 - L2 LINE L2 -389 2925 2298 22 35 0 0 chr13 32303760 32303789 -69569380 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 32304162 32304190 -69568979 + AT_rich Low_complexity Low_complexity 1 28 0 734 255 112 5 chr13 32304618 32304814 -69568355 + MIR SINE MIR 43 259 -3 1166 191 59 7 chr13 32305134 32305438 -69567731 - MER33 DNA MER1_type 0 324 5 21 57 0 0 chr13 32305840 32305875 -69567294 + AT_rich Low_complexity Low_complexity 1 35 0 219 69 0 0 chr13 32306135 32306164 -69567005 + (TTC)n Simple_repeat Simple_repeat 2 30 0 2295 101 3 0 chr13 32306925 32307233 -69565936 + AluSp SINE Alu 2 310 -3 23 0 0 0 chr13 32307460 32307483 -69565686 + AT_rich Low_complexity Low_complexity 1 23 0 231 380 83 9 chr13 32307657 32307765 -69565404 - L2 LINE L2 -18 3295 3180 26 64 0 0 chr13 32307976 32308023 -69565146 + AT_rich Low_complexity Low_complexity 1 47 0 403 277 121 0 chr13 32309959 32310100 -69563069 + MIR SINE MIR 49 206 -56 221 363 140 38 chr13 32310498 32310790 -69562379 - L2 LINE L2 -430 2884 2563 207 326 86 29 chr13 32310974 32311149 -69562020 - L2 LINE L2 -929 2385 2201 2087 112 0 14 chr13 32312536 32312822 -69560347 - AluSx SINE Alu -30 282 1 25 0 0 0 chr13 32312833 32312858 -69560311 + AT_rich Low_complexity Low_complexity 1 25 0 2405 56 7 13 chr13 32313616 32313922 -69559247 + AluSq SINE Alu 1 304 -9 697 251 104 22 chr13 32314093 32314324 -69558845 - MIR SINE MIR -10 252 3 1770 151 74 19 chr13 32314353 32314677 -69558492 + MER2 DNA MER2_type 2 343 -1 184 237 0 0 chr13 32315116 32315154 -69558015 - MIR SINE MIR -57 205 168 184 368 66 0 chr13 32315158 32315234 -69557935 - MIR SINE MIR -162 100 20 699 175 12 81 chr13 32315500 32315660 -69557509 - MIR SINE MIR -50 212 64 24 0 0 0 chr13 32316902 32316926 -69556243 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr13 32317055 32317088 -69556081 + AT_rich Low_complexity Low_complexity 1 33 0 195 302 0 0 chr13 32317588 32317631 -69555538 - MIR SINE MIR -55 153 111 2831 228 145 10 chr13 32317756 32318973 -69554196 + L1MB1 LINE L1 4603 5990 -199 1693 217 167 11 chr13 32318614 32319137 -69554032 + L1ME1 LINE L1 5566 6333 -1 * 306 106 0 0 chr13 32319840 32319887 -69553282 + (CA)n Simple_repeat Simple_repeat 1 47 0 2136 97 10 13 chr13 32320249 32320549 -69552620 - AluSx SINE Alu -13 299 1 28 0 0 0 chr13 32320640 32320668 -69552501 + AT_rich Low_complexity Low_complexity 1 28 0 376 335 78 37 chr13 32322051 32322269 -69550900 - L2 LINE L2 -449 2865 2639 972 201 67 100 chr13 32322269 32322761 -69550408 + L1MC5 LINE L1 7179 7654 -307 694 289 144 29 chr13 32322967 32323517 -69549652 - L2 LINE L2 -972 2342 1730 3011 165 40 44 chr13 32323684 32324326 -69548843 + L1MB7 LINE L1 5526 6165 -19 25 0 0 0 chr13 32324667 32324692 -69548477 + AT_rich Low_complexity Low_complexity 1 25 0 262 261 29 0 chr13 32326448 32326517 -69546652 + MIR SINE MIR 13 83 -179 559 194 0 0 chr13 32327031 32327129 -69546040 - Tigger7 DNA MER2_type -1 2490 2393 * 1290 180 66 23 chr13 32327127 32327383 -69545786 - Tigger7 DNA MER2_type -466 267 1 511 249 168 6 chr13 32328804 32328977 -69544192 - MIR SINE MIR -14 248 48 303 232 29 0 chr13 32329026 32329095 -69544074 - MIR SINE MIR -190 72 2 2076 83 8 8 chr13 32329345 32329611 -69543558 - AluSg SINE Alu -6 304 39 748 243 122 9 chr13 32329679 32329893 -69543276 + MIR SINE MIR 22 259 -3 251 276 103 26 chr13 32329957 32330073 -69543096 - L1ME LINE L1 -361 5760 5636 209 189 0 0 chr13 32330268 32330305 -69542864 + (TG)n Simple_repeat Simple_repeat 1 37 0 494 320 11 6 chr13 32332500 32332678 -69540491 - MIR SINE MIR -20 242 64 198 0 0 0 chr13 32332789 32332811 -69540358 + (T)n Simple_repeat Simple_repeat 1 22 0 944 247 13 17 chr13 32333066 32333297 -69539872 + MIR SINE MIR 8 237 -25 221 250 103 59 chr13 32333352 32333488 -69539681 - L3 LINE CR1 -22 1555 1414 219 310 18 18 chr13 32333507 32333620 -69539549 + (TGAG)n Simple_repeat Simple_repeat 2 114 0 253 203 31 31 chr13 32334135 32334199 -69538970 + MIR SINE MIR 31 94 -168 879 130 0 0 chr13 32336412 32336558 -69536611 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 260 282 36 55 chr13 32336558 32336668 -69536501 - L2 LINE L2 -13 3300 3193 222 306 28 122 chr13 32336725 32336905 -69536264 + L3 LINE CR1 1413 1575 -2 732 266 68 14 chr13 32337202 32337424 -69535745 - MIR SINE MIR -15 247 14 338 250 114 0 chr13 32338351 32338439 -69534730 + MIR SINE MIR 87 184 -78 2176 105 3 13 chr13 32338641 32338946 -69534223 - AluSx SINE Alu -6 306 5 423 305 105 14 chr13 32339405 32340014 -69533155 - L1M4 LINE L1 -376 5802 5123 * 433 296 65 63 chr13 32340004 32340152 -69533017 - L1M4 LINE L1 -1247 4899 4753 2508 76 0 3 chr13 32340152 32340456 -69532713 - AluSx SINE Alu -9 303 1 433 296 65 63 chr13 32340456 32340784 -69532385 - L1M4 LINE L1 -1393 4753 4422 5890 150 48 4 chr13 32340816 32341909 -69531260 - L1MC2 LINE L1 -10 6334 5195 1067 143 90 97 chr13 32342230 32342509 -69530660 - MLT1A1 LTR MaLR 0 365 89 419 263 53 8 chr13 32343092 32343225 -69529944 - MER117 DNA MER1_type -58 139 1 216 0 0 0 chr13 32343847 32343871 -69529298 + (T)n Simple_repeat Simple_repeat 1 24 0 940 184 19 0 chr13 32344806 32344964 -69528205 + FRAM SINE Alu 5 165 -1 392 264 45 36 chr13 32345983 32346093 -69527076 + L2 LINE L2 3203 3313 0 386 240 80 40 chr13 32346749 32346899 -69526270 + MIR SINE MIR 57 212 -50 5904 113 12 5 chr13 32346931 32347808 -69525361 - Tigger3b DNA MER2_type -3 1228 345 637 210 48 8 chr13 32347829 32347953 -69525216 - FLAM_A SINE Alu -13 129 1 2190 142 21 0 chr13 32347953 32348290 -69524879 - Tigger3b DNA MER2_type -887 344 1 262 290 0 0 chr13 32348345 32348414 -69524755 - MIR SINE MIR -43 219 151 1981 147 0 10 chr13 32348438 32348763 -69524406 + AluSx SINE Alu 1 312 0 1479 231 117 25 chr13 32349156 32349597 -69523572 - MLT2B1 LTR ERVL -20 534 1 385 266 48 16 chr13 32349830 32349954 -69523215 - L2 LINE L2 -22 3250 3123 278 264 58 11 chr13 32350021 32350108 -69523061 - MIR SINE MIR -66 196 106 480 264 24 16 chr13 32350203 32350328 -69522841 - L2 LINE L2 -1 3271 3146 189 178 0 0 chr13 32350927 32350972 -69522197 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 537 248 105 13 chr13 32353367 32353520 -69519649 + MER5B DNA MER1_type 12 178 0 2381 167 44 15 chr13 32353546 32354000 -69519169 + MLT1C LTR MaLR 1 467 0 459 314 89 5 chr13 32355161 32355352 -69517817 + MIR SINE MIR 13 219 -43 2357 194 55 28 chr13 32355532 32355994 -69517175 + MLT2B1 LTR ERVL 1 449 -71 213 39 0 0 chr13 32355994 32356020 -69517149 + (TG)n Simple_repeat Simple_repeat 2 27 0 572 0 15 0 chr13 32356022 32356090 -69517079 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 2357 194 55 28 chr13 32356090 32356130 -69517039 + MLT2B1 LTR ERVL 449 520 0 210 366 162 0 chr13 32356423 32356565 -69516604 + L2 LINE L2 3089 3253 -19 462 259 30 104 chr13 32356663 32356702 -69516467 - MIR SINE MIR -17 245 205 1630 185 3 7 chr13 32356702 32356994 -69516175 - AluJo SINE Alu -11 301 11 462 259 30 104 chr13 32356994 32357155 -69516014 - MIR SINE MIR -57 205 60 2543 135 23 18 chr13 32357804 32358188 -69514981 - MLT1B LTR MaLR -4 386 1 262 277 12 12 chr13 32359922 32360005 -69513164 + MIR SINE MIR 147 229 -33 1801 187 30 18 chr13 32361222 32361559 -69511610 - MER2 DNA MER2_type -3 341 1 210 162 0 0 chr13 32362438 32362475 -69510694 + T-rich Low_complexity Low_complexity 1 37 0 233 314 29 0 chr13 32364627 32364697 -69508472 - L3b LINE CR1 -165 1418 1347 22 56 0 0 chr13 32367507 32367543 -69505626 + AT_rich Low_complexity Low_complexity 1 36 0 277 283 236 0 chr13 32368107 32368213 -69504956 - MIR3 SINE MIR -21 187 57 196 341 39 8 chr13 32369701 32369830 -69503339 - MIR SINE MIR -8 254 122 1004 197 111 0 chr13 32369949 32370147 -69503022 - MER58A DNA MER1_type -4 220 1 844 160 0 0 chr13 32372520 32372651 -69500518 - FLAM_A SINE Alu -2 131 1 782 261 73 8 chr13 32372672 32372906 -69500263 - MIR SINE MIR 0 262 14 735 242 36 49 chr13 32373559 32373782 -69499387 + MIR SINE MIR 11 230 -32 296 264 96 96 chr13 32373858 32374025 -69499144 - MARNA DNA Mariner -277 309 143 7111 188 60 20 chr13 32374038 32375832 -69497337 + L1M4 LINE L1 3659 5514 -664 561 193 46 18 chr13 32376100 32376209 -69496960 + MER81 DNA DNA 3 114 0 644 212 33 78 chr13 32376221 32376543 -69496626 + MLT1J1 LTR MaLR 75 377 -69 2339 106 0 6 chr13 32377163 32377475 -69495694 + AluSx SINE Alu 1 310 -2 198 266 89 13 chr13 32377483 32377562 -69495607 + MIR SINE MIR 175 259 -3 1245 301 38 7 chr13 32377639 32378057 -69495112 - LTR16B LTR ERVL 0 464 34 2376 101 0 0 chr13 32378166 32378462 -69494707 - AluSx SINE Alu -16 296 1 2160 207 38 54 chr13 32379123 32379410 -69493759 - MER69B DNA AcHobo -1308 1218 928 2249 109 0 13 chr13 32379410 32379713 -69493456 - AluSx SINE Alu -12 300 2 2160 207 38 54 chr13 32379713 32380050 -69493119 - MER69B DNA AcHobo -1598 928 604 2058 160 46 29 chr13 32380050 32380162 -69493007 - MER95 LTR ERV 0 431 322 2303 115 0 0 chr13 32380162 32380457 -69492712 + AluSx SINE Alu 1 295 -17 2058 160 46 29 chr13 32380457 32380756 -69492413 - MER95 LTR ERV -109 322 13 1388 260 64 25 chr13 32380758 32381242 -69491927 - MER69B DNA AcHobo -618 608 106 277 263 91 63 chr13 32381384 32381559 -69491610 - Tigger8 DNA MER2_type -5 661 482 682 319 84 4 chr13 32381852 32382125 -69491044 - L1MC/D LINE L1 -2042 5766 5472 1775 82 0 5 chr13 32382126 32382345 -69490824 - AluSq SINE Alu -84 229 12 231 61 0 0 chr13 32382370 32382403 -69490766 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 291 250 12 12 chr13 32382411 32382491 -69490678 - L1MC/D LINE L1 -2330 5478 5399 238 279 139 0 chr13 32382545 32382631 -69490538 - MLT1E3 LTR MaLR -414 210 113 285 73 24 0 chr13 32382786 32382827 -69490342 + tRNA-Cys-TGC tRNA tRNA 2 43 -32 576 264 87 109 chr13 32382852 32383405 -69489764 - L1MC/D LINE L1 -925 5221 4657 2551 66 0 0 chr13 32383405 32383707 -69489462 + AluY SINE Alu 1 302 -9 576 264 87 109 chr13 32383707 32384366 -69488803 - L1MC/D LINE L1 -1489 4657 4036 232 152 22 0 chr13 32384860 32384906 -69488263 - Tigger8 DNA MER2_type -410 256 210 4322 83 2 0 chr13 32385027 32385580 -69487589 - MER41A LTR ERV1 0 554 1 268 267 67 44 chr13 32385670 32385760 -69487409 - MER63A DNA MER1_type -24 186 95 1792 158 3 45 chr13 32385941 32386251 -69486918 - AluJo SINE Alu -15 297 1 386 283 70 44 chr13 32387299 32387571 -69485598 - MLT1J LTR MaLR -2 509 231 3737 153 38 31 chr13 32387587 32387691 -69485478 + L1MC1 LINE L1 5618 5720 -613 2288 142 25 0 chr13 32387691 32388044 -69485125 + THE1B LTR MaLR 1 362 -2 3737 153 38 31 chr13 32388044 32388352 -69484817 + L1MC1 LINE L1 5720 6024 -309 2252 164 36 7 chr13 32388352 32388766 -69484403 + MSTB LTR MaLR 1 426 0 3737 153 38 31 chr13 32388766 32389063 -69484106 + L1MC1 LINE L1 6024 6333 0 291 213 16 0 chr13 32389135 32389196 -69483973 - MLT1J LTR MaLR -331 180 119 2062 105 40 0 chr13 32389472 32389748 -69483421 - AluSx SINE Alu -18 294 8 227 298 12 24 chr13 32390023 32390107 -69483062 + LTR67 LTR ERVL 64 146 -411 21 0 0 0 chr13 32390310 32390331 -69482838 + AT_rich Low_complexity Low_complexity 1 21 0 253 260 0 2 chr13 32391075 32391149 -69482020 + MLT1J LTR MaLR 44 153 -332 368 265 53 15 chr13 32391371 32391503 -69481666 + LTR67 LTR ERVL 408 544 -13 572 336 37 4 chr13 32391527 32391768 -69481401 + MIR SINE MIR 1 249 -13 466 270 90 0 chr13 32394248 32394426 -69478743 + MIR SINE MIR 66 259 -3 2037 119 48 3 chr13 32395929 32396223 -69476946 + AluSx SINE Alu 1 307 -5 2347 103 3 0 chr13 32396225 32396527 -69476642 + AluSp SINE Alu 1 303 -10 479 335 78 14 chr13 32396586 32396916 -69476253 - L2 LINE L2 -218 3054 2708 23 0 0 0 chr13 32397995 32398018 -69475151 + AT_rich Low_complexity Low_complexity 1 23 0 215 318 89 30 chr13 32398511 32398747 -69474422 - L2 LINE L2 -191 3081 2832 326 138 17 0 chr13 32399299 32399357 -69473812 - MIR SINE MIR -114 148 90 1725 156 60 7 chr13 32399542 32399824 -69473345 - AluJo SINE Alu -15 297 1 792 291 96 46 chr13 32399843 32400309 -69472860 - L1ME4a LINE L1 -6 6115 5619 1834 159 0 30 chr13 32400309 32400605 -69472564 - AluJb SINE Alu -21 291 5 792 291 96 46 chr13 32400605 32400661 -69472508 - L1ME4a LINE L1 -502 5619 5567 2139 115 41 0 chr13 32400844 32401184 -69471985 - L1MA5A LINE L1 0 6297 5944 372 304 43 7 chr13 32401274 32401412 -69471757 - MIR SINE MIR -118 144 2 1123 89 0 21 chr13 32401463 32401697 -69471472 + (GGA)n Simple_repeat Simple_repeat 1 230 0 2473 59 3 13 chr13 32402931 32403237 -69469932 - AluY SINE Alu -8 303 1 2371 120 0 0 chr13 32403835 32404144 -69469025 - AluSx SINE Alu -3 309 1 1803 149 26 13 chr13 32404954 32405262 -69467907 + AluJo SINE Alu 1 312 0 198 111 56 0 chr13 32405908 32405944 -69467225 - L2 LINE L2 -8 3305 3268 252 0 0 0 chr13 32406345 32406373 -69466796 + (T)n Simple_repeat Simple_repeat 1 28 0 1167 189 18 40 chr13 32406729 32406800 -69466369 + MER58A DNA MER1_type 1 72 -2348 2222 117 0 3 chr13 32406800 32407099 -69466070 + AluSg SINE Alu 1 298 -12 1167 189 18 40 chr13 32407099 32407255 -69465914 + MER58A DNA MER1_type 72 223 -1 23 0 0 0 chr13 32407273 32407296 -69465873 + AT_rich Low_complexity Low_complexity 1 23 0 351 210 50 20 chr13 32407371 32407471 -69465698 + MER117 DNA MER1_type 1 103 -94 2308 95 0 3 chr13 32412333 32412628 -69460541 - AluSc SINE Alu -15 294 1 3206 123 12 18 chr13 32412644 32413150 -69460019 - L1PB4 LINE L1 -1 6155 5653 1489 201 36 10 chr13 32414230 32414539 -69458630 - L1ME LINE L1 -479 5683 5367 477 217 60 30 chr13 32414565 32414731 -69458438 - L1ME LINE L1 -868 5278 5108 1659 195 0 16 chr13 32414743 32415050 -69458119 - AluJo SINE Alu -10 302 1 1453 133 44 0 chr13 32415664 32415890 -69457279 + MER46A DNA MER2_type 1 236 0 831 139 0 16 chr13 32416575 32416697 -69456472 + FLAM_A SINE Alu 7 126 -16 1068 170 32 50 chr13 32416761 32416979 -69456190 - MER20 DNA MER1_type -5 214 1 24 32 0 0 chr13 32417057 32417088 -69456081 + AT_rich Low_complexity Low_complexity 1 31 0 450 171 13 0 chr13 32417195 32417271 -69455898 + MER3 DNA MER1_type 1 77 -132 235 324 49 10 chr13 32417433 32417535 -69455634 - HAL1 LINE L1 -1995 512 407 252 0 0 0 chr13 32417546 32417574 -69455595 + (TG)n Simple_repeat Simple_repeat 2 29 0 437 200 0 0 chr13 32417574 32417644 -69455525 - MER58A DNA MER1_type -37 70 1 554 191 122 27 chr13 32418479 32418626 -69454543 + MER5B DNA MER1_type 1 161 -17 21 0 0 0 chr13 32419700 32419721 -69453448 + AT_rich Low_complexity Low_complexity 1 21 0 333 202 164 112 chr13 32421911 32422198 -69450971 - MLT1K LTR MaLR -13 575 274 509 193 66 66 chr13 32423086 32423252 -69449917 + L2 LINE L2 3143 3308 -5 253 230 40 0 chr13 32424105 32424179 -69448990 + (TA)n Simple_repeat Simple_repeat 2 78 0 224 238 0 0 chr13 32424437 32424479 -69448690 + (ATG)n Simple_repeat Simple_repeat 3 44 0 228 239 291 22 chr13 32424571 32424705 -69448464 + MLT2F LTR ERVL 5 174 -489 579 204 45 19 chr13 32424733 32424890 -69448279 + MLT2F LTR ERVL 248 408 -255 587 284 18 0 chr13 32425055 32425224 -69447945 - MIR SINE MIR -84 178 7 389 227 103 0 chr13 32425326 32425423 -69447746 + L1MA4 LINE L1 6187 6293 -7 1063 185 0 0 chr13 32425490 32425663 -69447506 - FAM SINE Alu -2 173 1 471 256 62 0 chr13 32429267 32429396 -69443773 + MER5A DNA MER1_type 51 187 -2 444 315 61 30 chr13 32429454 32429651 -69443518 + MIR SINE MIR 58 260 -2 496 242 48 0 chr13 32430259 32430383 -69442786 - L2 LINE L2 -1 3312 3183 474 262 262 12 chr13 32430668 32431091 -69442078 - L2 LINE L2 -385 2929 2401 2611 149 19 18 chr13 32431791 32432248 -69440921 + MLT1C LTR MaLR 1 384 -12 648 275 156 16 chr13 32432258 32432627 -69440542 - L2 LINE L2 -174 3139 2701 3635 147 34 8 chr13 32432825 32433464 -69439705 + L1MB3 LINE L1 5526 6181 -2 357 337 64 16 chr13 32433668 32433855 -69439314 - L3b LINE CR1 -155 1428 1233 527 172 278 41 chr13 32434671 32434840 -69438329 + MER3 DNA MER1_type 1 209 0 421 204 30 68 chr13 32435178 32435310 -69437859 + L1ME3A LINE L1 6044 6170 0 192 354 26 9 chr13 32439153 32439266 -69433903 - L2 LINE L2 -1 3271 3157 332 187 103 56 chr13 32440191 32440298 -69432871 - MER91C DNA MER1_type -27 113 2 227 204 0 0 chr13 32440897 32440941 -69432228 - L2 LINE L2 -224 3048 3005 546 266 248 45 chr13 32441286 32441726 -69431443 + MLT1H LTR MaLR 21 549 0 433 294 119 24 chr13 32441800 32442052 -69431117 - L2 LINE L2 -793 2521 2246 726 216 35 24 chr13 32442658 32442856 -69430313 - MIR SINE MIR -39 223 23 372 222 17 60 chr13 32444288 32444405 -69428764 - MIR SINE MIR -1 261 150 1563 220 33 66 chr13 32444513 32445188 -69427981 + LTR9 LTR ERV1 1 612 0 647 221 147 0 chr13 32445708 32445871 -69427298 - L2 LINE L2 0 3313 3127 2096 119 0 7 chr13 32446305 32446615 -69426554 + AluSq SINE Alu 1 308 -5 225 230 380 10 chr13 32448565 32448665 -69424504 - MIR3 SINE MIR -52 156 20 181 286 0 0 chr13 32448736 32448778 -69424391 - L2 LINE L2 -93 3220 3179 992 302 77 25 chr13 32450360 32450917 -69422252 + L1ME4a LINE L1 5518 6103 -18 421 162 31 2 chr13 32451807 32451896 -69421273 - MER5A DNA MER1_type -93 85 4 201 132 53 0 chr13 32455448 32455486 -69417683 + CT-rich Low_complexity Low_complexity 2 41 0 604 254 36 0 chr13 32455536 32455674 -69417495 - MIR3 SINE MIR -27 181 39 815 255 100 81 chr13 32456590 32457069 -69416100 + MLT1J LTR MaLR 24 511 0 205 273 0 0 chr13 32458159 32458214 -69414955 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 23 33 0 0 chr13 32460050 32460080 -69413089 + AT_rich Low_complexity Low_complexity 1 30 0 237 291 76 0 chr13 32460812 32460891 -69412278 + L2 LINE L2 2648 2732 -582 409 339 89 22 chr13 32461159 32461383 -69411786 - L1ME LINE L1 -327 5794 5556 219 132 57 19 chr13 32461895 32461948 -69411221 + (CATA)n Simple_repeat Simple_repeat 4 58 0 221 264 0 109 chr13 32462870 32462980 -69410189 + MIR SINE MIR 109 206 -56 973 216 0 24 chr13 32463142 32463355 -69409814 - MIR SINE MIR -37 225 18 248 264 126 84 chr13 32463431 32463692 -69409477 + L2 LINE L2 1042 1313 -2001 1612 164 16 31 chr13 32463842 32464159 -69409010 + AluJo SINE Alu 1 312 0 639 276 93 115 chr13 32464173 32464988 -69408181 + L2 LINE L2 1586 2382 -932 286 306 49 44 chr13 32465104 32465417 -69407752 - L2 LINE L2 -216 3056 2698 2179 88 0 7 chr13 32465659 32465954 -69407215 - AluSp SINE Alu -20 293 1 33 0 0 0 chr13 32467534 32467567 -69405602 + GC_rich Low_complexity Low_complexity 1 33 0 221 211 0 40 chr13 32467786 32467862 -69405307 + C-rich Low_complexity Low_complexity 5 77 0 215 237 53 0 chr13 32467875 32467951 -69405218 + (CG)n Simple_repeat Simple_repeat 1 80 0 * 244 282 28 33 chr13 32467908 32468089 -69405080 + (CGTG)n Simple_repeat Simple_repeat 1 180 0 302 363 71 12 chr13 32468827 32468995 -69404174 - MIR SINE MIR -70 192 15 1686 150 49 0 chr13 32469377 32469663 -69403506 - AluJb SINE Alu -12 300 1 256 330 11 11 chr13 32470050 32470144 -69403025 - MIR SINE MIR -7 255 162 305 311 87 0 chr13 32470365 32470468 -69402701 - L2 LINE L2 -1 3271 3160 1803 181 25 60 chr13 32471669 32471957 -69401212 - MLT1B LTR MaLR -5 385 112 2163 90 0 0 chr13 32471957 32472339 -69400830 - AluSc SINE Alu 0 382 1 1803 181 25 60 chr13 32472339 32472448 -69400721 - MLT1B LTR MaLR -278 112 1 431 235 228 12 chr13 32472547 32472709 -69400460 + MIR SINE MIR 65 261 -1 1359 142 5 0 chr13 32473012 32473224 -69399945 + AluSg/x SINE Alu 99 311 -1 1735 183 0 6 chr13 32473767 32474078 -69399091 + AluJo SINE Alu 1 309 -3 271 276 71 61 chr13 32474197 32474295 -69398874 - L2 LINE L2 -33 3280 3182 382 309 175 12 chr13 32474787 32475033 -69398136 + L2 LINE L2 1535 1820 -1494 916 338 93 46 chr13 32475055 32476276 -69396893 + L2 LINE L2 1968 3257 -15 206 302 0 0 chr13 32476278 32476331 -69396838 + L2 LINE L2 3204 3256 -16 1594 307 69 32 chr13 32477788 32478305 -69394864 + L2 LINE L2 1949 2504 -810 1830 152 0 0 chr13 32478305 32478595 -69394574 - AluSx SINE Alu -22 290 1 1594 307 69 32 chr13 32478595 32478864 -69394305 + L2 LINE L2 2504 2761 -553 184 347 105 0 chr13 32478872 32478967 -69394202 - L2 LINE L2 -922 2392 2288 1354 124 10 0 chr13 32479443 32479637 -69393532 + AluSg/x SINE Alu 107 302 -10 675 291 34 13 chr13 32480135 32480372 -69392797 - MIR SINE MIR -7 255 14 679 294 97 0 chr13 32481798 32482036 -69391133 + L2 LINE L2 2912 3172 -141 401 238 0 36 chr13 32482022 32482106 -69391063 - L2 LINE L2 -20 3293 3213 * 2082 182 46 26 chr13 32482237 32482654 -69390515 - MSTC LTR MaLR 0 428 4 254 262 71 50 chr13 32482945 32483086 -69390083 - L1MC/D LINE L1 -1919 5889 5746 2385 88 0 7 chr13 32483469 32483777 -69389392 - AluSq SINE Alu -7 306 1 313 203 163 2 chr13 32484298 32484447 -69388722 + MER63 DNA MER1_type 1 1688 0 1226 259 86 88 chr13 32484581 32485175 -69387994 - MLT1G1 LTR MaLR 0 595 3 1334 131 11 24 chr13 32485249 32485401 -69387768 - MSTB1 LTR MaLR 0 426 273 2341 95 7 0 chr13 32485401 32485696 -69387473 - AluSq SINE Alu -16 297 1 1334 131 11 24 chr13 32485696 32485898 -69387271 - MSTB1 LTR MaLR -153 273 1 506 274 159 44 chr13 32486024 32486407 -69386762 - L2 LINE L2 0 3313 2887 630 319 98 30 chr13 32486426 32486918 -69386251 - L2 LINE L2 -1052 2262 1738 275 271 37 28 chr13 32487380 32487487 -69385682 - MIR3 SINE MIR -8 200 93 22 0 0 0 chr13 32487777 32487799 -69385370 + AT_rich Low_complexity Low_complexity 1 22 0 2320 174 120 62 chr13 32488050 32488791 -69384378 + Harlequin LTR ERV1 957 1740 -5156 * 5595 108 8 4 chr13 32488769 32489563 -69383606 + Harlequin LTR ERV1 7603 8399 0 232 269 0 0 chr13 32489563 32489615 -69383554 + LTR30 LTR ERV1 1 52 -670 2631 109 11 92 chr13 32489615 32490081 -69383088 + LTR12 LTR ERV1 53 480 -234 209 179 0 54 chr13 32490608 32490664 -69382505 - MIR SINE MIR -120 142 90 2145 89 0 38 chr13 32490700 32491023 -69382146 - AluSp SINE Alu 0 313 2 944 214 145 126 chr13 32491067 32491783 -69381386 - L1ME3A LINE L1 -23 6130 5401 338 125 0 0 chr13 32491801 32491849 -69381320 + Charlie3 DNA MER1_type 221 268 -2442 648 295 71 14 chr13 32491849 32492332 -69380837 - L1ME3A LINE L1 -738 5407 4868 612 237 132 0 chr13 32492963 32493142 -69380027 + LTR41 LTR ERVL 9 239 -556 794 240 6 6 chr13 32493333 32493516 -69379653 - L1MC4 LINE L1 -982 7060 6878 1393 266 46 57 chr13 32493516 32494060 -69379109 - L1ME3A LINE L1 -1814 4315 3778 707 293 63 52 chr13 32494358 32494880 -69378289 - L1ME3A LINE L1 -5061 1058 531 3998 105 15 11 chr13 32494881 32495405 -69377764 + MER1A DNA MER1_type 1 526 -1 462 234 199 0 chr13 32495774 32495945 -69377224 - L2 LINE L2 -773 2541 2337 317 93 93 0 chr13 32495955 32496009 -69377160 + HSMAR1 DNA Mariner 1229 1287 0 272 301 12 0 chr13 32496009 32496092 -69377077 - L2 LINE L2 -992 2322 2239 589 260 103 5 chr13 32496835 32497039 -69376130 - MIR SINE MIR -4 258 35 2177 169 22 37 chr13 32497946 32498355 -69374814 + MER57A LTR ERV1 1 403 0 413 237 0 0 chr13 32499108 32499184 -69373985 - MER5A DNA MER1_type -83 106 31 324 0 0 0 chr13 32499632 32499668 -69373501 + (TG)n Simple_repeat Simple_repeat 2 37 0 667 284 125 58 chr13 32500285 32500764 -69372405 - MLT1K LTR MaLR -2 586 76 2426 67 0 10 chr13 32501020 32501318 -69371851 - AluY SINE Alu -16 295 1 2205 119 7 0 chr13 32501389 32501684 -69371485 - AluSx SINE Alu -15 297 1 676 321 160 8 chr13 32501684 32502154 -69371015 - L3 LINE CR1 -193 1384 844 313 223 10 68 chr13 32502350 32502453 -69370716 - L1ME3A LINE L1 -99 6071 5975 2217 244 80 46 chr13 32502572 32503568 -69369601 - L1MC5 LINE L1 -439 7522 6476 644 304 67 44 chr13 32503846 32504431 -69368738 - HAL1b LINE L1 -690 658 61 23 33 0 0 chr13 32505013 32505043 -69368126 + AT_rich Low_complexity Low_complexity 1 30 0 550 331 129 18 chr13 32505946 32506327 -69366842 - L2 LINE L2 -1043 2271 1849 357 297 7 19 chr13 32507022 32507177 -69365992 - L1MC5 LINE L1 -2355 5453 5301 292 325 80 7 chr13 32508084 32508235 -69364934 - LTR16C LTR ERVL -32 459 298 220 224 0 15 chr13 32508849 32508916 -69364253 + (TA)n Simple_repeat Simple_repeat 1 66 0 1400 196 104 13 chr13 32510144 32510460 -69362709 - MER2 DNA MER2_type 0 345 1 232 287 193 7 chr13 32510480 32510630 -69362539 - MIR SINE MIR -1 261 84 344 329 35 21 chr13 32510828 32510971 -69362198 - MIR SINE MIR -98 164 20 1375 109 0 0 chr13 32511932 32512116 -69361053 - AluSp SINE Alu 0 313 130 1092 77 0 0 chr13 32512198 32512328 -69360841 - AluSp SINE Alu -183 130 1 202 300 173 55 chr13 32512918 32513028 -69360141 - MIR3 SINE MIR -72 136 14 358 252 9 54 chr13 32513945 32514015 -69359154 - MLT1J LTR MaLR -30 481 416 2428 125 122 8 chr13 32514015 32514399 -69358770 - MSTA LTR MaLR 0 428 1 358 252 9 54 chr13 32514399 32514439 -69358730 - MLT1J LTR MaLR -95 416 376 4085 137 8 20 chr13 32514477 32515132 -69358037 - MSTA-int LTR MaLR 0 1580 934 3744 53 0 7 chr13 32515134 32515585 -69357584 - LTR7 LTR ERV1 -2 448 1 2552 81 45 16 chr13 32515585 32515966 -69357203 - HERVH LTR ERV1 0 7713 7322 1365 119 20 0 chr13 32515964 32516165 -69357004 - HERVH LTR ERV1 -1894 5819 5615 * 2289 160 73 0 chr13 32516202 32516584 -69356585 - HERVH LTR ERV1 -2564 5149 4740 967 145 0 0 chr13 32516583 32516728 -69356441 - HERVH LTR ERV1 -4069 3644 3500 * 943 140 7 0 chr13 32516727 32516877 -69356292 - HERVH LTR ERV1 -4423 3290 3140 * 20507 88 26 16 chr13 32516856 32519824 -69353345 - HERVH LTR ERV1 -4718 2995 1 3693 53 5 7 chr13 32519826 32520275 -69352894 - LTR7 LTR ERV1 -2 448 1 2906 169 24 12 chr13 32520275 32520773 -69352396 - MSTA-int LTR MaLR -642 938 435 1809 139 3 7 chr13 32520786 32521073 -69352096 - MSTA-int LTR MaLR -1365 286 1 2363 143 114 5 chr13 32521073 32521459 -69351710 - MSTA LTR MaLR 0 428 1 550 268 26 103 chr13 32521608 32521825 -69351344 - MLT1J LTR MaLR -268 243 1 236 193 18 0 chr13 32522857 32522914 -69350255 + (TG)n Simple_repeat Simple_repeat 1 58 0 2274 113 0 0 chr13 32523038 32523339 -69349830 - AluSx SINE Alu -6 306 6 3439 16 5 3 chr13 32523536 32523913 -69349256 - L1PA2 LINE L1 0 6155 5778 298 317 41 16 chr13 32523982 32524105 -69349064 + L2 LINE L2 3188 3313 0 326 331 33 16 chr13 32524108 32524229 -69348940 + MIR SINE MIR 140 262 0 813 252 73 28 chr13 32524348 32524665 -69348504 + L2 LINE L2 1816 2146 -1168 488 301 154 4 chr13 32524687 32525013 -69348156 - LTR33 LTR ERVL 0 521 114 642 271 203 25 chr13 32525102 32525423 -69347746 + L2 LINE L2 2172 2549 -765 1812 164 11 3 chr13 32525475 32525761 -69347408 - AluJo SINE Alu -24 288 1 492 258 16 16 chr13 32525783 32525911 -69347258 - L2 LINE L2 -3 3269 3142 2595 177 22 0 chr13 32526325 32526772 -69346397 + LTR32 LTR ERVL 15 471 0 257 239 113 31 chr13 32527498 32527668 -69345501 + L1ME LINE L1 1043 1311 -5323 1794 179 43 3 chr13 32528455 32528780 -69344389 - MER74A LTR ERVL -187 371 34 574 290 39 23 chr13 32529166 32529428 -69343741 - L1M4 LINE L1 -1949 4197 3935 181 0 0 0 chr13 32529609 32529629 -69343540 + (TTTA)n Simple_repeat Simple_repeat 2 156 0 2023 96 19 4 chr13 32529629 32529900 -69343269 - AluSq SINE Alu -28 285 11 2642 87 6 6 chr13 32529980 32530335 -69342834 + THE1A LTR MaLR 1 355 0 463 276 35 14 chr13 32531892 32532037 -69341132 + MIR SINE MIR 4 151 -111 628 193 118 57 chr13 32532583 32532665 -69340504 + L1ME3 LINE L1 5917 5993 -169 2162 113 0 0 chr13 32532665 32532989 -69340180 - AluSx SINE Alu 0 324 1 628 193 118 57 chr13 32532989 32533133 -69340036 + L1ME3 LINE L1 5993 6158 -4 705 246 82 35 chr13 32533596 32533828 -69339341 + MIR SINE MIR 15 257 -5 21 0 0 0 chr13 32534958 32534979 -69338190 + AT_rich Low_complexity Low_complexity 1 21 0 264 320 0 0 chr13 32535361 32535439 -69337730 + L2 LINE L2 3231 3308 -5 2870 140 39 51 chr13 32535756 32536208 -69336961 + L1MB2 LINE L1 5601 6046 -125 1855 157 30 7 chr13 32536208 32536513 -69336656 + AluJo SINE Alu 1 312 0 2870 140 39 51 chr13 32536513 32536631 -69336538 + L1MB2 LINE L1 6046 6164 -7 210 91 0 0 chr13 32536666 32536699 -69336470 + (TCTCTG)n Simple_repeat Simple_repeat 5 37 0 480 266 0 9 chr13 32536703 32536812 -69336357 - MER45C DNA AcHobo -149 804 697 935 242 127 29 chr13 32536837 32537151 -69336018 - MER45C DNA AcHobo -608 345 1 1360 186 0 23 chr13 32537528 32537791 -69335378 + AluJo SINE Alu 40 296 -16 381 171 288 14 chr13 32538066 32538212 -69334957 - MER5A DNA MER1_type 0 189 4 260 264 9 47 chr13 32538315 32538421 -69334748 + L2 LINE L2 2994 3095 -177 1491 190 108 78 chr13 32538562 32538728 -69334441 - MLT1D LTR MaLR 0 505 346 207 0 0 0 chr13 32538728 32538751 -69334418 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1491 190 108 78 chr13 32538751 32539074 -69334095 - MLT1D LTR MaLR -159 346 1 468 286 23 41 chr13 32542208 32542379 -69330790 - MER5B DNA MER1_type -6 172 5 2296 93 3 0 chr13 32542403 32542693 -69330476 - AluSx SINE Alu -21 291 1 649 131 0 10 chr13 32543272 32543371 -69329798 + MER4A LTR ERV1 1 98 -566 1925 123 3 59 chr13 32543371 32543737 -69329432 + MER4A LTR ERV1 261 664 0 35 24 0 0 chr13 32543958 32544000 -69329169 + AT_rich Low_complexity Low_complexity 1 42 0 661 157 33 0 chr13 32544001 32544122 -69329047 - L1MB1 LINE L1 -1 6167 6043 1674 152 165 70 chr13 32544127 32544496 -69328673 - MER4A LTR ERV1 0 664 261 538 122 89 0 chr13 32544496 32544586 -69328583 - MER4A LTR ERV1 -566 98 1 16656 106 85 54 chr13 32544587 32548334 -69324835 - MER4A-int LTR ERV1 0 6598 1303 2300 107 0 0 chr13 32548334 32548623 -69324546 - AluSg SINE Alu -21 289 1 16656 106 85 54 chr13 32548623 32548773 -69324396 - MER4A-int LTR ERV1 -5295 1303 1159 944 112 158 112 chr13 32548768 32548989 -69324180 - MER4A-int LTR ERV1 -4236 1268 1059 * 408 71 0 0 chr13 32548989 32549045 -69324124 + (CA)n Simple_repeat Simple_repeat 2 57 0 944 112 158 112 chr13 32549045 32549163 -69324006 - MER4A-int LTR ERV1 -4445 1059 503 * 2934 104 144 22 chr13 32549149 32549685 -69323484 - MER4A-int LTR ERV1 -5997 601 1 1733 143 162 73 chr13 32549688 32550059 -69323110 - MER4A LTR ERV1 0 664 261 528 101 101 0 chr13 32550059 32550148 -69323021 - MER4A LTR ERV1 -566 98 1 4052 106 2 7 chr13 32550152 32550707 -69322462 - MER41A LTR ERV1 -2 552 1 3859 149 32 53 chr13 32550707 32550809 -69322360 - L1MB1 LINE L1 -125 6043 5940 2124 135 10 0 chr13 32550809 32551106 -69322063 - AluSx SINE Alu -12 300 1 3859 149 32 53 chr13 32551106 32551795 -69321374 - L1MB1 LINE L1 -228 5940 5279 281 233 111 0 chr13 32552347 32552437 -69320732 + L1ME4a LINE L1 6020 6119 -2 242 254 36 0 chr13 32552462 32552517 -69320652 + polypurine Low_complexity Low_complexity 2 58 0 195 69 0 0 chr13 32553050 32553079 -69320090 + (CA)n Simple_repeat Simple_repeat 2 30 0 200 314 196 0 chr13 32553213 32553315 -69319854 + L2 LINE L2 3149 3270 -2 189 298 0 0 chr13 32553489 32553536 -69319633 - MER5A DNA MER1_type -2 187 141 500 259 59 12 chr13 32554112 32554282 -69318887 + LTR33A LTR ERVL 346 523 0 1765 164 9 46 chr13 32554458 32554782 -69318387 - AluJo SINE Alu 0 312 1 340 256 151 10 chr13 32555772 32555971 -69317198 - MER110A LTR ERV1 0 468 242 45 0 0 0 chr13 32556562 32556607 -69316562 + AT_rich Low_complexity Low_complexity 1 45 0 1280 160 29 8 chr13 32556638 32556882 -69316287 - L1MB3 LINE L1 -2 6181 5933 4186 97 0 4 chr13 32556882 32557438 -69315731 - MER41A LTR ERV1 0 554 1 9412 63 50 40 chr13 32557442 32557693 -69315476 - MER41A-int LTR ERV1 -8 5938 5691 2165 91 35 0 chr13 32557693 32557980 -69315189 - AluSc SINE Alu -12 297 1 9412 63 50 40 chr13 32557980 32559080 -69314089 - MER41A-int LTR ERV1 -255 5691 4574 5229 118 59 47 chr13 32559062 32560530 -69312639 - MER41A-int LTR ERV1 -1906 4273 2186 * 865 168 37 6 chr13 32560510 32560671 -69312498 - MER41A-int LTR ERV1 -5308 638 473 * 953 155 0 0 chr13 32560658 32560800 -69312369 - MER41A-int LTR ERV1 -5426 520 379 3505 158 23 7 chr13 32560834 32561405 -69311764 - LTR22 LTR ERVK 0 580 1 2746 108 11 3 chr13 32561405 32561786 -69311383 - MER41A-int LTR ERV1 -5562 384 1 4117 88 18 0 chr13 32561786 32562330 -69310839 - MER41A LTR ERV1 0 554 1 461 169 0 0 chr13 32562330 32562407 -69310762 - L1MB3 LINE L1 -247 5933 5857 530 267 79 20 chr13 32562655 32562857 -69310312 + MIR SINE MIR 2 215 -47 1891 151 7 13 chr13 32562953 32563258 -69309911 - AluJb SINE Alu -9 303 1 964 299 22 38 chr13 32564493 32564945 -69308224 + L2 LINE L2 1949 2393 -921 2368 87 0 0 chr13 32565010 32565297 -69307872 - AluSc SINE Alu -22 287 1 673 156 9 0 chr13 32565297 32565406 -69307763 - MLT1B LTR MaLR -280 110 1 373 248 170 13 chr13 32565505 32565658 -69307511 + MIR SINE MIR 65 241 -21 1422 146 5 0 chr13 32565970 32566182 -69306987 + AluSg/x SINE Alu 99 311 -1 1720 194 3 7 chr13 32566725 32567035 -69306134 + AluJo SINE Alu 1 309 -3 198 274 16 0 chr13 32568192 32568254 -69304915 + L2 LINE L2 3250 3312 -1 2488 195 108 45 chr13 32569529 32570212 -69302957 - LTR8A LTR ERV1 0 727 2 200 273 52 91 chr13 32570230 32570384 -69302785 - L2 LINE L2 0 3313 3166 1270 256 82 8 chr13 32570405 32570772 -69302397 + MLT1I LTR MaLR 12 405 -4 217 306 35 12 chr13 32571398 32571483 -69301686 - L3 LINE CR1 -242 1335 1249 224 237 8 93 chr13 32571519 32571637 -69301532 + MIR SINE MIR 107 214 -48 352 277 52 32 chr13 32571696 32571851 -69301318 + MIR3 SINE MIR 3 160 -48 21 0 0 0 chr13 32572637 32572658 -69300511 + AT_rich Low_complexity Low_complexity 1 21 0 249 281 0 0 chr13 32573922 32573979 -69299190 + L2 LINE L2 3244 3300 -13 348 276 60 37 chr13 32574017 32574151 -69299018 + MIR3 SINE MIR 27 163 -45 4634 196 79 52 chr13 32574260 32575566 -69297603 + Charlie1a DNA MER1_type 1 1341 -114 537 148 96 17 chr13 32575673 32575788 -69297381 + Charlie1a DNA MER1_type 1332 1455 0 986 210 126 47 chr13 32576219 32576600 -69296569 + MER69 DNA AcHobo 2115 2525 -1 2218 123 0 3 chr13 32576617 32576926 -69296243 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr13 32577014 32577035 -69296134 + AT_rich Low_complexity Low_complexity 1 21 0 194 139 0 28 chr13 32577111 32577147 -69296022 + MIR3 SINE MIR 153 187 -21 2198 96 7 10 chr13 32577491 32577792 -69295377 - AluSg SINE Alu -10 300 1 261 221 32 32 chr13 32578188 32578283 -69294886 + (TTCA)n Simple_repeat Simple_repeat 1 95 0 1510 179 4 4 chr13 32578521 32578778 -69294391 + AluJo SINE Alu 11 267 -45 190 284 30 0 chr13 32579078 32579145 -69294024 - MIR SINE MIR -95 167 99 * 582 351 130 10 chr13 32579126 32579647 -69293522 + L2 LINE L2 2732 3313 0 209 309 48 12 chr13 32579638 32579722 -69293447 - MIR SINE MIR -156 106 20 * 1893 142 10 42 chr13 32579797 32580106 -69293063 + AluJo SINE Alu 1 299 -13 213 281 49 12 chr13 32580728 32580810 -69292359 + MIR SINE MIR 73 157 -105 367 320 20 14 chr13 32580903 32581050 -69292119 + L3 LINE CR1 1380 1527 -50 253 250 279 0 chr13 32581119 32581259 -69291910 + L2 LINE L2 2883 3061 -252 251 394 62 13 chr13 32581509 32581735 -69291434 - L2 LINE L2 -18 3254 3018 2898 231 41 3 chr13 32582011 32582640 -69290529 + MER82 DNA MER2_type 1 653 0 1271 216 134 26 chr13 32582640 32583028 -69290141 - MLT1C LTR MaLR -32 435 6 276 77 0 0 chr13 32583504 32583543 -69289626 + (A)n Simple_repeat Simple_repeat 1 39 0 312 291 122 23 chr13 32583546 32583718 -69289451 + MIR SINE MIR 64 252 -10 404 171 0 11 chr13 32583718 32583806 -69289363 + CT-rich Low_complexity Low_complexity 1 87 0 1596 184 118 19 chr13 32583812 32584226 -69288943 - MLT1C LTR MaLR -7 460 6 424 231 154 35 chr13 32586624 32586793 -69286376 + MIR SINE MIR 66 254 -8 1474 80 25 5 chr13 32586916 32587140 -69286029 + L1PA10 LINE L1 5948 6175 0 2162 93 0 81 chr13 32587145 32587466 -69285703 + AluSx SINE Alu 1 295 -17 1106 192 9 49 chr13 32587488 32587712 -69285457 + MER58A DNA MER1_type 2 216 -8 1142 233 108 17 chr13 32587799 32588102 -69285067 + MLT1A2 LTR MaLR 51 370 -4 185 309 25 37 chr13 32589282 32589363 -69283806 + MIR SINE MIR 21 100 -162 2038 107 3 17 chr13 32589873 32590164 -69283005 + AluJb SINE Alu 24 310 -2 696 201 32 78 chr13 32590220 32590504 -69282665 - L1MC5 LINE L1 -31 7930 7660 5892 193 67 84 chr13 32590627 32591898 -69281271 - L1MC4 LINE L1 0 8042 6822 384 77 0 0 chr13 32591898 32591950 -69281219 + (CA)n Simple_repeat Simple_repeat 1 52 0 5892 193 67 84 chr13 32591950 32592870 -69280299 - L1MC4 LINE L1 -1220 6822 5888 182 276 0 0 chr13 32596406 32596464 -69276705 - MIR SINE MIR -108 154 97 223 303 0 0 chr13 32596596 32596662 -69276507 + MIR SINE MIR 61 126 -136 610 258 99 5 chr13 32598792 32599005 -69274164 - MIR SINE MIR -14 248 16 299 300 17 8 chr13 32599000 32599120 -69274049 - MIR SINE MIR -76 186 66 * 510 290 43 24 chr13 32599604 32599937 -69273232 + MLT1J LTR MaLR 75 447 -64 428 221 138 48 chr13 32600625 32601031 -69272138 + MLT1E LTR MaLR 21 547 -8 358 219 14 0 chr13 32601144 32601217 -69271952 + MER91A DNA MER1_type 1 74 -122 862 232 38 21 chr13 32602700 32602937 -69270232 - L1MA9 LINE L1 -37 6275 6035 548 124 112 0 chr13 32602930 32603019 -69270150 + L1MA9 LINE L1 5681 5779 -533 * 478 115 35 0 chr13 32603019 32603106 -69270063 + (TCTA)n Simple_repeat Simple_repeat 2 91 0 1058 175 35 70 chr13 32603108 32603365 -69269804 + L1MA9 LINE L1 5793 6040 -272 260 322 144 0 chr13 32603365 32603483 -69269686 - MIR SINE MIR -78 184 50 821 130 8 23 chr13 32603982 32604105 -69269064 + FLAM_C SINE Alu 1 123 -189 294 73 0 0 chr13 32604105 32604146 -69269023 + (CA)n Simple_repeat Simple_repeat 2 42 0 266 261 41 118 chr13 32604890 32605085 -69268084 + MIR SINE MIR 33 212 -50 1016 102 7 0 chr13 32607122 32607269 -69265900 - L1PA15 LINE L1 0 6165 6018 1801 153 3 20 chr13 32607960 32608255 -69264914 - AluJo SINE Alu -22 290 1 318 268 47 55 chr13 32608929 32609056 -69264113 + MIR SINE MIR 28 153 -109 14275 67 11 0 chr13 32609288 32611946 -69261223 + L1PA6 LINE L1 3491 6154 0 232 254 200 9 chr13 32612070 32612180 -69260989 - L2 LINE L2 -21 3251 3121 1537 99 36 5 chr13 32612490 32612713 -69260456 - L1PA8 LINE L1 -24 6148 5919 563 114 114 0 chr13 32612713 32612801 -69260368 + 5S rRNA rRNA 1 98 -23 715 218 29 113 chr13 32612824 32613063 -69260106 - MER20 DNA MER1_type 0 219 1 239 307 228 8 chr13 32614294 32614421 -69258748 + MIR3 SINE MIR 21 175 -33 458 312 81 29 chr13 32616796 32617181 -69255988 + L1ME4a LINE L1 5529 5933 -188 410 195 125 0 chr13 32617182 32617310 -69255859 + L1ME4a LINE L1 5978 6121 0 185 348 67 18 chr13 32617513 32617677 -69255492 - L2 LINE L2 -1275 2039 1868 363 321 8 8 chr13 32618232 32618366 -69254803 + MIR SINE MIR 4 137 -125 201 39 0 0 chr13 32618369 32618395 -69254774 + (TAA)n Simple_repeat Simple_repeat 1 26 0 186 294 15 15 chr13 32618659 32618727 -69254442 - L2 LINE L2 -5 3308 3241 271 344 182 21 chr13 32618821 32619013 -69254156 - MIR SINE MIR -20 242 20 1112 236 99 40 chr13 32619709 32619878 -69253291 - L2 LINE L2 0 3313 3155 2197 116 3 3 chr13 32619878 32620180 -69252989 + AluSx SINE Alu 1 302 -10 219 69 0 0 chr13 32620180 32620209 -69252960 + (TA)n Simple_repeat Simple_repeat 1 29 0 1112 236 99 40 chr13 32620209 32620685 -69252484 - L2 LINE L2 -157 3156 2625 234 346 52 7 chr13 32620862 32620998 -69252171 + L2 LINE L2 3125 3266 -6 336 102 0 0 chr13 32623057 32623106 -69250063 + (TG)n Simple_repeat Simple_repeat 1 49 0 527 309 75 28 chr13 32623550 32623916 -69249253 + L1MCc LINE L1 31 446 -5977 677 296 66 34 chr13 32624300 32625065 -69248104 + L1MCc LINE L1 1129 1910 -4910 309 389 8 0 chr13 32625747 32625878 -69247291 + MIR SINE MIR 20 151 -111 747 222 35 43 chr13 32626541 32626771 -69246398 - MER112 DNA MER1_type -31 229 2 184 306 41 82 chr13 32627007 32627105 -69246064 - L2 LINE L2 -55 3217 3124 1603 199 167 12 chr13 32627188 32627590 -69245579 - MLT1C LTR MaLR 0 467 4 358 198 174 0 chr13 32628237 32628323 -69244846 - L2 LINE L2 -10 3303 3203 626 147 101 0 chr13 32628875 32629004 -69244165 - L1MB7 LINE L1 0 6184 6043 518 163 0 0 chr13 32629166 32629246 -69243923 - AluJ/FLAM SINE Alu -228 84 5 1743 181 53 0 chr13 32629609 32629947 -69243222 - L1MB4 LINE L1 -12 6168 5813 1042 167 0 0 chr13 32629947 32630109 -69243060 - AluSg/x SINE Alu -23 287 126 927 251 164 25 chr13 32631009 32631535 -69241634 + L1MC4a LINE L1 5670 6268 -1540 308 328 98 57 chr13 32631544 32631809 -69241360 + L1MC4 LINE L1 6312 6587 -1455 2299 240 28 35 chr13 32631868 32632974 -69240195 + L1MCc LINE L1 826 1945 -4887 517 284 37 25 chr13 32634216 32634378 -69238791 + MIR SINE MIR 46 209 -53 238 159 0 23 chr13 32634412 32634456 -69238713 + MER116 DNA Mariner 38 80 0 794 245 46 42 chr13 32635650 32635887 -69237282 + L1ME2 LINE L1 5883 6120 -44 256 359 35 7 chr13 32637136 32637278 -69235891 - L2 LINE L2 -10 3303 3158 243 309 0 0 chr13 32637326 32637410 -69235759 - L1MC4 LINE L1 -1338 6704 6621 676 301 70 18 chr13 32639499 32639850 -69233319 + L1ME LINE L1 5374 5652 -469 538 213 19 84 chr13 32640529 32640684 -69232485 - MIR3 SINE MIR -34 174 30 201 341 96 36 chr13 32640856 32641023 -69232146 - MIR SINE MIR -77 185 9 1159 114 0 0 chr13 32641059 32641226 -69231943 - AluSg/x SINE Alu -3 309 143 626 273 26 39 chr13 32641704 32641935 -69231234 + MIR SINE MIR 23 250 -12 611 282 31 6 chr13 32642050 32642213 -69230956 + MIR SINE MIR 48 214 -48 829 201 24 76 chr13 32642431 32642680 -69230489 + L1ME2 LINE L1 3784 4019 -2127 339 248 137 19 chr13 32642903 32643064 -69230105 + L1MC5 LINE L1 7033 7212 -749 764 258 134 42 chr13 32643182 32643262 -69229907 + L1MC5 LINE L1 7249 7320 -641 1098 156 65 15 chr13 32643262 32643461 -69229708 - MER3 DNA MER1_type 0 209 1 764 258 134 42 chr13 32643461 32643926 -69229243 + L1MC5 LINE L1 7320 7844 -117 24 32 0 0 chr13 32643979 32644010 -69229159 + AT_rich Low_complexity Low_complexity 1 31 0 28 79 0 0 chr13 32644112 32644175 -69228994 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr13 32644281 32644302 -69228867 + AT_rich Low_complexity Low_complexity 1 21 0 444 284 8 8 chr13 32644595 32644722 -69228447 + MER94 DNA DNA 7 133 -1 280 239 65 43 chr13 32645140 32645232 -69227937 - MER5B DNA MER1_type -84 94 1 227 315 141 13 chr13 32646471 32646620 -69226549 - L2 LINE L2 -173 3099 2932 2183 186 72 33 chr13 32647316 32647626 -69225543 - MLT1D LTR MaLR -3 502 165 2274 80 3 3 chr13 32647626 32647926 -69225243 - AluSp SINE Alu -13 300 1 2183 186 72 33 chr13 32647926 32648098 -69225071 - MLT1D LTR MaLR -340 165 1 13739 48 74 5 chr13 32648174 32649923 -69223246 + L1P LINE L1 3 1873 -4273 489 226 58 13 chr13 32649936 32650091 -69223078 - L1MC4 LINE L1 -273 7769 7608 6214 74 21 29 chr13 32650097 32651897 -69221272 - SVA Other Other -551 1385 4 234 0 0 0 chr13 32653347 32653373 -69219796 + (TA)n Simple_repeat Simple_repeat 2 27 0 1689 112 123 4 chr13 32653930 32654187 -69218982 + AluSx SINE Alu 1 293 -9 2326 77 3 3 chr13 32654187 32654498 -69218671 + AluY SINE Alu 1 311 0 1689 112 123 4 chr13 32654498 32654509 -69218660 + AluSx SINE Alu 293 301 -1 214 158 0 18 chr13 32654611 32654668 -69218501 + (TG)n Simple_repeat Simple_repeat 1 56 0 3084 233 57 34 chr13 32654771 32655560 -69217609 + L1ME2 LINE L1 4334 5103 -1061 1845 182 30 45 chr13 32655560 32655956 -69217213 + MLT1B LTR MaLR 1 390 0 3084 233 57 34 chr13 32655956 32656744 -69216425 + L1ME2 LINE L1 5103 5965 -199 1252 380 3 38 chr13 32656744 32657060 -69216109 + AluSq SINE Alu 1 305 -8 3084 233 57 34 chr13 32657060 32657258 -69215911 + L1ME2 LINE L1 5965 6157 -7 1140 219 0 18 chr13 32657682 32657910 -69215259 + MER58A DNA MER1_type 1 224 0 587 313 58 8 chr13 32657988 32658231 -69214938 - MIR SINE MIR 0 262 8 436 317 189 27 chr13 32658680 32659277 -69213892 - L2 LINE L2 -760 2554 1861 191 265 199 51 chr13 32659500 32659696 -69213473 - L2 LINE L2 -1913 1401 1177 309 259 63 116 chr13 32661991 32662180 -69210989 - MER91A DNA MER1_type -15 181 3 197 212 0 0 chr13 32662632 32662665 -69210504 - MER5B DNA MER1_type -142 36 4 705 291 196 16 chr13 32664451 32664829 -69208340 - L2 LINE L2 -42 3271 2826 205 263 144 6 chr13 32665246 32665359 -69207810 - MIR SINE MIR -6 256 54 195 219 0 94 chr13 32665644 32665708 -69207461 + MER5A DNA MER1_type 81 138 -51 251 306 60 45 chr13 32667556 32667690 -69205479 - MER5A DNA MER1_type -37 152 17 355 287 102 30 chr13 32667711 32667878 -69205291 + MIR SINE MIR 41 219 -43 295 265 99 40 chr13 32669161 32669384 -69203785 - L1ME4a LINE L1 0 6121 5886 186 206 0 0 chr13 32670754 32670788 -69202381 - MIR SINE MIR -122 140 107 318 50 0 0 chr13 32671198 32671238 -69201931 + (TG)n Simple_repeat Simple_repeat 2 41 0 620 248 107 20 chr13 32672091 32672319 -69200850 - MIR SINE MIR 0 262 13 396 179 0 0 chr13 32673164 32673242 -69199927 + G-rich Low_complexity Low_complexity 4 81 0 192 200 0 79 chr13 32673945 32674049 -69199120 + MIR SINE MIR 37 179 -83 446 96 110 14 chr13 32674123 32674196 -69198973 - Tigger5 DNA MER2_type 0 2323 2244 316 230 0 14 chr13 32674276 32674350 -69198819 - Tigger5 DNA MER2_type 0 2323 2251 476 290 62 42 chr13 32674369 32674562 -69198607 - MIR SINE MIR -7 255 59 685 256 28 11 chr13 32674624 32674800 -69198369 + MIR SINE MIR 76 254 -8 271 341 83 0 chr13 32677251 32677383 -69195786 - MIR SINE MIR -18 244 102 2179 62 7 4 chr13 32678580 32678856 -69194313 + AluSp SINE Alu 5 281 -32 21 0 0 0 chr13 32679307 32679328 -69193841 + AT_rich Low_complexity Low_complexity 1 21 0 30413 32 20 4 chr13 32679358 32685374 -69187795 - L1PA2 LINE L1 -5 6150 1 189 195 0 0 chr13 32685455 32685496 -69187673 + (TG)n Simple_repeat Simple_repeat 2 42 0 241 233 67 33 chr13 32685920 32686010 -69187159 + L1ME4a LINE L1 5985 6077 -44 304 306 73 8 chr13 32686090 32686214 -69186955 + MIR SINE MIR 126 257 -5 245 253 102 49 chr13 32686418 32686683 -69186486 - L1 LINE L1 -1717 4429 4151 349 339 88 18 chr13 32686692 32686863 -69186306 - L1 LINE L1 -2052 4094 3912 810 90 33 0 chr13 32686872 32686994 -69186175 - THE1C LTR MaLR -55 320 195 284 296 23 8 chr13 32687066 32687198 -69185971 - L1 LINE L1 -2301 3845 3712 285 278 100 22 chr13 32688398 32688538 -69184631 + MIR3 SINE MIR 21 173 -35 2913 9 0 0 chr13 32689301 32689618 -69183551 + AluYb8 SINE Alu 1 317 -1 687 189 8 8 chr13 32690917 32691044 -69182125 + MER5B DNA MER1_type 51 177 -1 386 322 88 79 chr13 32691400 32691480 -69181689 - L2 LINE L2 -1 3271 3193 1540 220 65 52 chr13 32691480 32692034 -69181135 - MER68 LTR ERV1 0 562 2 386 322 88 79 chr13 32692034 32692787 -69180382 - L2 LINE L2 -79 3193 2430 790 137 11 28 chr13 32692870 32693052 -69180117 + CT-rich Low_complexity Low_complexity 1 179 0 279 261 18 63 chr13 32693094 32693205 -69179964 - L2 LINE L2 -979 2335 2230 302 296 12 0 chr13 32694793 32694874 -69178295 + GA-rich Low_complexity Low_complexity 3 84 0 1961 155 0 37 chr13 32694915 32695238 -69177931 - AluJb SINE Alu -1 311 1 690 243 62 8 chr13 32695274 32695517 -69177652 - L1ME LINE L1 -375 5746 5491 2296 104 3 22 chr13 32695746 32696062 -69177107 + AluSx SINE Alu 1 310 -2 413 296 85 45 chr13 32698171 32698394 -69174775 + L2 LINE L2 3041 3272 0 207 260 268 63 chr13 32698879 32699006 -69174163 + MIR SINE MIR 35 187 -75 1503 183 73 24 chr13 32699006 32699295 -69173874 - AluJo SINE Alu -9 303 1 410 345 57 17 chr13 32699812 32699989 -69173180 + MIR SINE MIR 29 212 -50 224 295 0 0 chr13 32700188 32700249 -69172920 + MIR SINE MIR 188 248 -14 248 212 106 83 chr13 32700312 32700444 -69172725 - MIR3 SINE MIR -26 182 48 203 222 0 14 chr13 32701179 32701251 -69171918 + (TATG)n Simple_repeat Simple_repeat 2 72 0 224 328 30 0 chr13 32701924 32701991 -69171178 - L2 LINE L2 0 3272 3204 1503 146 15 58 chr13 32701994 32702402 -69170767 - Tigger3(Golem) DNA MER2_type -1 3028 2 231 385 71 12 chr13 32702494 32702663 -69170506 - L2 LINE L2 -252 3061 2883 362 184 58 11 chr13 32702976 32703063 -69170106 + MIR SINE MIR 172 262 0 236 86 0 0 chr13 32703095 32703130 -69170039 + L1MC4a LINE L1 7171 7205 -603 861 230 127 32 chr13 32703132 32703217 -69169952 + L1MD3 LINE L1 7610 7686 -309 2291 95 3 3 chr13 32703217 32703513 -69169656 - AluSp SINE Alu -17 296 1 861 230 127 32 chr13 32703513 32703766 -69169403 + L1MD3 LINE L1 7686 7980 -15 859 255 63 64 chr13 32703776 32703965 -69169204 + L1ME4a LINE L1 856 1044 -5352 2287 81 3 0 chr13 32703965 32704272 -69168897 + AluSp SINE Alu 1 308 0 859 255 63 64 chr13 32704272 32704780 -69168389 + L1ME4a LINE L1 1044 1553 -4843 * 2972 217 13 28 chr13 32704778 32705608 -69167561 + L1M4 LINE L1 3202 4019 -2127 2646 227 138 10 chr13 32705618 32706513 -69166656 + L1MC4 LINE L1 6614 7623 -419 452 322 95 43 chr13 32706659 32707322 -69165847 + L1ME4a LINE L1 3767 4473 -1742 294 323 16 10 chr13 32707376 32707568 -69165601 + L1ME4a LINE L1 4536 4728 -1487 319 279 65 71 chr13 32707582 32707676 -69165493 + L1ME4a LINE L1 5011 5104 -1111 2468 84 3 0 chr13 32707676 32707984 -69165185 + AluSp SINE Alu 1 309 -4 319 279 65 71 chr13 32707984 32708183 -69164986 + L1ME4a LINE L1 5104 5302 -913 415 286 95 23 chr13 32708232 32708776 -69164393 + L1ME4a LINE L1 5357 5942 -248 5650 116 18 18 chr13 32708798 32710339 -69162830 + L1PA16 LINE L1 4615 6166 0 582 27 27 0 chr13 32710453 32710528 -69162641 + AluY SINE Alu 221 297 -12 330 298 66 39 chr13 32712283 32712538 -69160631 + L1ME4a LINE L1 5157 5420 -755 399 224 119 66 chr13 32712802 32713105 -69160064 + L1ME4a LINE L1 5724 6042 -79 2005 154 3 0 chr13 32714728 32715020 -69158149 + AluSx SINE Alu 1 293 -19 1036 175 6 0 chr13 32715247 32715407 -69157762 - FAM SINE Alu -16 169 9 1241 197 9 5 chr13 32716319 32716542 -69156627 + MER58A DNA MER1_type 1 224 0 385 263 154 40 chr13 32719482 32719657 -69153512 + MIR SINE MIR 11 205 -57 357 24 0 0 chr13 32720000 32720042 -69153127 + (CA)n Simple_repeat Simple_repeat 2 43 0 191 241 157 83 chr13 32720738 32720846 -69152323 + MIR3 SINE MIR 88 203 -5 192 182 0 0 chr13 32720846 32720890 -69152279 + (TCCA)n Simple_repeat Simple_repeat 4 47 0 369 306 252 19 chr13 32721431 32721637 -69151532 + MIR SINE MIR 1 254 -8 686 221 176 25 chr13 32722244 32722443 -69150726 + MIR SINE MIR 2 230 -32 23 0 0 0 chr13 32722773 32722796 -69150373 + AT_rich Low_complexity Low_complexity 1 23 0 1900 109 0 0 chr13 32722796 32723062 -69150107 - L1PA8 LINE L1 0 6172 5907 294 131 83 83 chr13 32723215 32723299 -69149870 + MER112 DNA MER1_type 1 84 -176 596 120 10 0 chr13 32723346 32723446 -69149723 + (CATCC)n Simple_repeat Simple_repeat 4 104 0 385 151 0 0 chr13 32724414 32724487 -69148682 + LTR1B LTR ERV1 1 73 -753 * 1992 107 28 16 chr13 32724477 32724796 -69148373 + MER4A LTR ERV1 342 664 0 316 294 139 15 chr13 32726052 32726253 -69146916 + MIR SINE MIR 21 246 -16 643 234 131 51 chr13 32727052 32727366 -69145803 - L1ME2 LINE L1 -25 6139 5800 4055 203 73 50 chr13 32727467 32727877 -69145292 - L1ME2 LINE L1 -952 5194 4795 1582 206 0 52 chr13 32727877 32728058 -69145111 - AluJo SINE Alu -1 311 153 2294 87 0 10 chr13 32728058 32728356 -69144813 - AluY SINE Alu -16 295 1 1582 206 0 52 chr13 32728356 32728499 -69144670 - AluJo SINE Alu -159 153 4 4055 203 73 50 chr13 32728499 32728603 -69144566 - L1ME2 LINE L1 -1351 4795 4695 2149 150 3 15 chr13 32728603 32728944 -69144225 + MER1B DNA MER1_type 1 337 0 4055 203 73 50 chr13 32728944 32729795 -69143374 - L1ME2 LINE L1 -1451 4695 3797 1991 155 0 16 chr13 32729906 32730216 -69142953 + AluJb SINE Alu 5 309 -3 207 314 229 17 chr13 32731307 32731788 -69141381 + L2 LINE L2 2379 2961 -353 338 333 18 0 chr13 32732101 32732215 -69140954 - MIR SINE MIR -66 142 27 6059 172 76 11 chr13 32734748 32735445 -69137724 + Charlie1a DNA MER1_type 5 656 -2105 252 0 0 0 chr13 32735445 32735473 -69137696 + (TG)n Simple_repeat Simple_repeat 2 29 0 6059 172 76 11 chr13 32735473 32736138 -69137031 + Charlie1a DNA MER1_type 656 1455 0 210 37 0 0 chr13 32737990 32738017 -69135152 + (CA)n Simple_repeat Simple_repeat 1 27 0 216 0 0 0 chr13 32738472 32738496 -69134673 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr13 32738558 32738579 -69134590 + AT_rich Low_complexity Low_complexity 1 21 0 807 264 31 9 chr13 32738583 32738810 -69134359 + MIR SINE MIR 23 254 -8 201 286 20 0 chr13 32740139 32740188 -69132981 + MIR SINE MIR 66 115 -147 522 300 91 4 chr13 32740234 32740464 -69132705 + MIR SINE MIR 13 262 0 23 54 0 0 chr13 32740775 32740812 -69132357 + AT_rich Low_complexity Low_complexity 1 37 0 3394 237 106 25 chr13 32741276 32742543 -69130626 + L1MEc LINE L1 35 1403 -4993 1752 161 43 0 chr13 32742582 32742861 -69130308 + AluJb SINE Alu 1 291 -21 5755 217 65 50 chr13 32742862 32745728 -69127441 - L1M4 LINE L1 -3609 3035 39 607 256 119 18 chr13 32746129 32746348 -69126821 + MIR SINE MIR 8 248 -14 1940 105 10 66 chr13 32747081 32747432 -69125737 + AluSx SINE Alu 1 312 0 323 304 256 10 chr13 32747529 32747736 -69125433 - MIR SINE MIR 0 262 5 2444 45 0 7 chr13 32748992 32749301 -69123868 + AluY SINE Alu 1 311 0 391 247 70 71 chr13 32749688 32749905 -69123264 + MIR SINE MIR 4 220 -42 23 68 0 0 chr13 32751365 32751409 -69121760 + AT_rich Low_complexity Low_complexity 1 44 0 188 206 0 0 chr13 32751853 32751887 -69121282 + L2 LINE L2 3267 3300 -13 310 284 83 41 chr13 32751981 32752199 -69120970 - L2 LINE L2 -222 3050 2824 446 251 26 77 chr13 32752261 32752456 -69120713 - MIR SINE MIR -10 252 68 21 0 0 0 chr13 32753458 32753479 -69119690 + AT_rich Low_complexity Low_complexity 1 21 0 685 160 131 51 chr13 32754992 32755167 -69118002 + MER5A DNA MER1_type 1 189 0 1745 214 90 28 chr13 32755768 32756379 -69116790 + L1ME3 LINE L1 5492 6140 -22 24 32 0 0 chr13 32757210 32757241 -69115928 + GC_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr13 32757681 32757709 -69115460 + GC_rich Low_complexity Low_complexity 1 28 0 2154 116 7 0 chr13 32758248 32758550 -69114619 + AluSx SINE Alu 1 304 -8 1132 184 26 4 chr13 32759038 32759494 -69113675 - MER44D DNA MER2_type 0 605 1 348 221 127 17 chr13 32759614 32759795 -69113374 - L1ME4a LINE L1 -217 5904 5704 5473 86 9 14 chr13 32760023 32760162 -69113007 + L1PA10 LINE L1 5360 5498 -670 2567 64 0 10 chr13 32760162 32760473 -69112696 + AluSp SINE Alu 1 308 -5 5473 86 9 14 chr13 32760473 32761135 -69112034 + L1PA10 LINE L1 5498 6157 -11 711 296 22 9 chr13 32761804 32762034 -69111135 - MIR SINE MIR -14 248 16 230 229 14 57 chr13 32762049 32762119 -69111050 + L2 LINE L2 3202 3268 -4 2019 226 59 6 chr13 32762873 32763416 -69109753 + MER90 LTR ERV1 1 572 -3 2861 7 0 0 chr13 32766035 32766345 -69106824 + AluYa5 SINE Alu 1 310 -1 1475 269 44 29 chr13 32766438 32766914 -69106255 - L2 LINE L2 -16 3297 2815 248 315 27 46 chr13 32767084 32767303 -69105866 + MER112 DNA MER1_type 12 226 -34 2040 164 20 0 chr13 32767972 32768313 -69104856 + MER7A DNA MER2_type 1 346 0 249 219 35 44 chr13 32768427 32768541 -69104628 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 24 0 0 0 chr13 32768650 32768674 -69104495 + AT_rich Low_complexity Low_complexity 1 24 0 216 282 47 12 chr13 32768888 32768973 -69104196 + L3b LINE CR1 1295 1382 -201 23 0 0 0 chr13 32769816 32769839 -69103330 + AT_rich Low_complexity Low_complexity 1 23 0 6851 100 15 5 chr13 32769839 32770983 -69102186 - L1MA2 LINE L1 0 6304 5143 219 328 180 8 chr13 32771523 32771651 -69101518 + MIR3 SINE MIR 16 165 -43 3404 133 25 7 chr13 32772591 32773155 -69100014 - MER50 LTR ERV1 -23 711 138 996 33 0 0 chr13 32774362 32774482 -69098687 + L1PA3 LINE L1 6036 6155 0 205 170 0 106 chr13 32774644 32774691 -69098478 + L2 LINE L2 120 161 -3153 764 240 27 0 chr13 32775955 32776138 -69097031 + MER63A DNA MER1_type 9 196 -14 214 350 15 85 chr13 32776968 32777168 -69096001 + MIR3 SINE MIR 2 187 -21 1131 153 94 30 chr13 32777346 32777549 -69095620 - AluJb SINE Alu -10 302 87 21 0 0 0 chr13 32777643 32777664 -69095505 + AT_rich Low_complexity Low_complexity 1 21 0 287 242 11 22 chr13 32777734 32777825 -69095344 - MLT1K LTR MaLR 0 588 499 206 295 85 31 chr13 32777914 32778043 -69095126 + L2 LINE L2 596 731 -2583 320 235 24 12 chr13 32779431 32779516 -69093653 - L1MC5 LINE L1 -44 7917 7832 22 56 0 0 chr13 32779603 32779639 -69093530 + AT_rich Low_complexity Low_complexity 1 36 0 739 238 71 58 chr13 32779791 32780368 -69092801 - L1MC5 LINE L1 -203 7758 7260 228 314 126 16 chr13 32780478 32780669 -69092500 + L2 LINE L2 3020 3231 -82 4571 160 44 15 chr13 32780669 32781675 -69091494 - L1MC2 LINE L1 -9 6335 5156 320 247 0 59 chr13 32781678 32781763 -69091406 + L2 LINE L2 3225 3304 -9 350 296 86 18 chr13 32782636 32782825 -69090344 + L1M4 LINE L1 5037 5241 -905 819 216 20 106 chr13 32782868 32783036 -69090133 + LTR16A LTR ERVL 207 347 -103 1584 212 6 3 chr13 32783036 32783347 -69089822 - AluJb SINE Alu 0 312 1 819 216 20 106 chr13 32783347 32783432 -69089737 + LTR16A LTR ERVL 347 438 -12 432 319 60 24 chr13 32783444 32784051 -69089118 - L1MC4a LINE L1 -312 5858 5267 416 271 65 57 chr13 32784068 32784315 -69088854 - L1MC4a LINE L1 -905 5241 4993 2047 153 0 3 chr13 32784343 32784643 -69088526 - AluSx SINE Alu -13 299 1 376 316 81 0 chr13 32784777 32784951 -69088218 + L1MEc LINE L1 1624 1811 -4585 2686 129 18 0 chr13 32785293 32785736 -69087433 + L1MB3 LINE L1 5718 6168 -15 1914 149 33 27 chr13 32785840 32786175 -69086994 - MER1B DNA MER1_type -2 337 1 219 316 99 67 chr13 32786206 32786459 -69086710 + L2 LINE L2 2453 2713 -601 366 322 101 66 chr13 32786663 32786980 -69086189 + L2 LINE L2 2945 3272 0 1627 94 31 0 chr13 32787000 32787223 -69085946 + MER30 DNA MER1_type 1 230 0 25 0 0 0 chr13 32787532 32787557 -69085612 + AT_rich Low_complexity Low_complexity 1 25 0 1712 78 0 0 chr13 32787574 32787779 -69085390 - AluSc SINE Alu -25 284 80 1159 186 57 0 chr13 32787779 32787989 -69085180 + MER58A DNA MER1_type 2 223 -1 341 240 192 0 chr13 32788680 32788784 -69084385 + L2 LINE L2 3187 3310 -3 231 36 0 0 chr13 32789155 32789183 -69083986 + (A)n Simple_repeat Simple_repeat 1 28 0 3134 202 16 31 chr13 32790344 32790871 -69082298 + L1ME1 LINE L1 4513 5047 -1119 2444 38 0 56 chr13 32790871 32791191 -69081978 + AluY SINE Alu 1 302 -9 3134 202 16 31 chr13 32791191 32791806 -69081363 + L1ME1 LINE L1 5047 5634 -532 949 242 18 26 chr13 32791806 32792188 -69080981 + MLT2B1 LTR ERVL 1 477 -43 512 130 0 122 chr13 32792308 32792423 -69080746 - MER46A DNA MER2_type -135 101 1 1533 196 60 69 chr13 32792468 32793005 -69080164 + L1ME1 LINE L1 5630 6161 -5 2893 136 6 24 chr13 32793209 32793703 -69079466 + MER31A LTR ERV1 1 485 0 734 250 53 26 chr13 32793839 32794143 -69079026 - L1ME4a LINE L1 -195 5926 5615 302 254 92 34 chr13 32794234 32794488 -69078681 - L1ME4a LINE L1 -521 5600 5329 25 0 0 0 chr13 32794925 32794950 -69078219 + AT_rich Low_complexity Low_complexity 1 25 0 2296 100 3 3 chr13 32794950 32795259 -69077910 - AluSx SINE Alu -3 309 1 283 193 0 0 chr13 32795590 32795647 -69077522 + MER31A LTR ERV1 420 476 -9 2035 244 34 19 chr13 32795647 32796269 -69076900 - L1ME2 LINE L1 -97 6067 5437 543 265 61 10 chr13 32796295 32796491 -69076678 - L1ME2 LINE L1 -52 6046 5841 804 191 74 57 chr13 32796491 32796552 -69076617 - MLT1E3 LTR MaLR 0 624 566 2325 71 0 0 chr13 32796552 32796876 -69076293 - AluY SINE Alu 0 324 1 804 191 74 57 chr13 32796876 32797043 -69076126 - MLT1E3 LTR MaLR -58 566 391 624 178 172 44 chr13 32797085 32797265 -69075904 - MLT1E3 LTR MaLR -368 258 56 1874 213 106 39 chr13 32797307 32798214 -69074955 - L1ME2 LINE L1 -247 5851 4888 2681 219 26 32 chr13 32798250 32799117 -69074052 - L1ME2 LINE L1 -1436 4644 3783 560 254 128 22 chr13 32799122 32799616 -69073553 - L1ME2 LINE L1 -5063 928 454 527 164 0 18 chr13 32799907 32800017 -69073152 + GA-rich Low_complexity Low_complexity 1 108 0 * 763 106 23 8 chr13 32800007 32800139 -69073030 + A-rich Low_complexity Low_complexity 4 137 0 442 299 58 56 chr13 32800212 32800623 -69072546 - L1ME2 LINE L1 -5618 452 41 319 273 85 18 chr13 32800699 32800781 -69072388 - L1ME4a LINE L1 -194 5927 5852 3342 170 8 15 chr13 32800781 32801388 -69071781 - MER6A DNA MER2_type -2 603 1 319 273 85 18 chr13 32801388 32801470 -69071699 - L1ME4a LINE L1 -269 5852 5752 897 155 48 170 chr13 32801562 32801654 -69071515 - MER8 DNA MER2_type -1 238 136 2305 88 17 0 chr13 32801654 32801948 -69071221 - AluSx SINE Alu -13 299 1 897 155 48 170 chr13 32801948 32802126 -69071043 - MER8 DNA MER2_type -103 136 1 180 0 0 0 chr13 32802975 32802995 -69070174 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4827 178 14 10 chr13 32802998 32803033 -69070136 - L1MB2 LINE L1 -16 6155 6122 2316 104 0 0 chr13 32803033 32803332 -69069837 - AluSx SINE Alu -13 299 1 4827 178 14 10 chr13 32803332 32805130 -69068039 - L1MB2 LINE L1 -49 6122 4316 22721 165 25 16 chr13 32805362 32811566 -69061603 - L1PA11 LINE L1 -4 7608 1 286 234 75 11 chr13 32811800 32811894 -69061275 - MIR SINE MIR 0 262 163 226 221 12 35 chr13 32812158 32812244 -69060925 - L1MC4 LINE L1 -41 8001 7918 233 375 0 0 chr13 32812245 32812325 -69060844 + CT-rich Low_complexity Low_complexity 6 85 0 259 317 20 27 chr13 32812325 32812618 -69060551 - L1MC5 LINE L1 -167 7794 7504 2413 121 53 22 chr13 32813088 32813503 -69059666 - MSTA LTR MaLR 0 428 1 337 298 65 16 chr13 32814054 32814178 -69058991 - MIR SINE MIR -101 161 32 225 0 0 0 chr13 32814181 32814206 -69058963 + (TG)n Simple_repeat Simple_repeat 2 26 0 224 162 297 0 chr13 32814326 32814400 -69058769 + L2 LINE L2 2691 2786 -528 1792 235 82 40 chr13 32814402 32815156 -69058013 + L1MC4 LINE L1 7228 8013 -29 245 200 19 43 chr13 32815446 32815569 -69057600 - L1MC/D LINE L1 -738 5426 5374 317 288 52 26 chr13 32815644 32815797 -69057372 - L1MC/D LINE L1 -868 5278 5122 2384 164 34 47 chr13 32815906 32816441 -69056728 - L1MA4 LINE L1 -7 6293 5766 813 116 0 0 chr13 32816441 32816553 -69056616 - AluSg/x SINE Alu -25 285 174 2021 105 0 3 chr13 32816553 32816858 -69056311 - L1MA4 LINE L1 -518 5782 5479 257 50 0 25 chr13 32816858 32816898 -69056271 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 38 39 0 0 chr13 32817432 32817484 -69055685 + AT_rich Low_complexity Low_complexity 1 52 0 31 20 0 20 chr13 32818062 32818088 -69055081 + AT_rich Low_complexity Low_complexity 1 27 -21 2096 149 0 19 chr13 32818088 32818404 -69054765 + AluSx SINE Alu 3 312 0 31 20 0 20 chr13 32818404 32818426 -69054743 + AT_rich Low_complexity Low_complexity 27 48 0 523 254 17 94 chr13 32820210 32820498 -69052671 - MLT1K LTR MaLR -12 576 311 1290 270 71 26 chr13 32820721 32821188 -69051981 + MLT1L LTR MaLR 95 582 -33 257 223 96 57 chr13 32821316 32821473 -69051696 - MLT1K LTR MaLR -342 246 84 21 71 0 0 chr13 32822248 32822290 -69050879 + AT_rich Low_complexity Low_complexity 1 42 0 300 296 90 98 chr13 32823814 32824213 -69048956 - L1M2 LINE L1 -5706 1143 748 195 270 83 64 chr13 32824487 32824691 -69048478 - L3b LINE CR1 -200 1383 1176 208 292 146 21 chr13 32824934 32825030 -69048139 + MIR3 SINE MIR 11 118 -90 986 164 16 11 chr13 32825281 32825470 -69047699 - MER20 DNA MER1_type -2 217 28 338 175 57 153 chr13 32825545 32825661 -69047508 - MER104 DNA Tc2 -1737 161 66 917 188 29 0 chr13 32825661 32825831 -69047338 - FAM SINE Alu 0 175 1 338 175 57 153 chr13 32825831 32825891 -69047278 - MER104 DNA Tc2 -1832 66 2 466 275 50 25 chr13 32827398 32827558 -69045611 + MIR SINE MIR 21 184 -78 245 319 17 16 chr13 32828128 32828243 -69044926 - MIR SINE MIR -68 140 23 1245 205 62 62 chr13 32828371 32828742 -69044427 - MLT1B LTR MaLR -19 371 1 2493 84 0 0 chr13 32830678 32831022 -69042147 - AluY SINE Alu 0 344 1 11129 77 10 4 chr13 32832223 32834528 -69038641 - L1PA7 LINE L1 -5 6149 3828 6699 111 8 1 chr13 32834529 32835592 -69037577 + L1PA7 LINE L1 2746 3815 -2331 226 321 12 12 chr13 32835599 32835680 -69037489 + MIR SINE MIR 57 137 -71 194 152 0 43 chr13 32836225 32836271 -69036898 + T-rich Low_complexity Low_complexity 2 45 0 246 62 0 0 chr13 32836273 32836305 -69036864 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 323 272 33 11 chr13 32836383 32836475 -69036694 - MIR SINE MIR -50 212 119 234 71 119 0 chr13 32836621 32836663 -69036506 - MLT1D LTR MaLR -405 100 54 1207 82 155 43 chr13 32838225 32838432 -69034737 + MER30 DNA MER1_type 1 230 0 316 289 134 24 chr13 32838788 32839199 -69033970 - L1MEd LINE L1 -3021 3108 2653 299 250 10 0 chr13 32839431 32839535 -69033634 - L1MEd LINE L1 -3822 2307 2203 1919 147 0 26 chr13 32839712 32840018 -69033151 - AluJo SINE Alu -14 298 1 255 249 147 40 chr13 32840473 32840650 -69032519 - HAL1 LINE L1 -875 1632 1437 485 277 58 33 chr13 32840695 32841024 -69032145 - L1MEd LINE L1 -4864 1255 919 1283 187 0 0 chr13 32841116 32841320 -69031849 + MER1B DNA MER1_type 5 211 -168 1873 44 0 0 chr13 32841320 32841548 -69031621 + L1PA5 LINE L1 5920 6147 -7 190 286 0 0 chr13 32841953 32842002 -69031167 - L2 LINE L2 0 3313 3265 626 134 30 67 chr13 32842321 32842455 -69030714 + MER1B DNA MER1_type 211 339 0 312 346 73 42 chr13 32842463 32842873 -69030296 - L1MEd LINE L1 -5308 811 389 291 187 132 22 chr13 32842893 32842984 -69030185 - L1MEd LINE L1 -5965 154 54 985 298 146 21 chr13 32843328 32843848 -69029321 - MLT1K LTR MaLR 0 588 4 270 217 0 0 chr13 32845320 32845389 -69027780 + (TG)n Simple_repeat Simple_repeat 2 70 0 263 59 0 0 chr13 32845426 32845460 -69027709 - U2 snRNA snRNA -152 36 3 4366 277 142 23 chr13 32846025 32846365 -69026804 + L2 LINE L2 923 1221 -2092 1655 168 16 6 chr13 32846365 32846686 -69026483 + MER33 DNA MER1_type 1 324 0 4366 277 142 23 chr13 32846686 32848348 -69024821 + L2 LINE L2 1221 3184 -129 723 220 112 70 chr13 32848350 32848821 -69024348 + MLT1D LTR MaLR 1 467 0 375 194 185 9 chr13 32848827 32848935 -69024234 + L2 LINE L2 3182 3308 -5 374 244 47 0 chr13 32852450 32852585 -69020584 - L1MD2 LINE L1 -32 7806 6196 246 32 0 0 chr13 32852627 32852658 -69020511 + (CA)n Simple_repeat Simple_repeat 2 32 0 252 0 0 0 chr13 32852708 32852736 -69020433 + (TG)n Simple_repeat Simple_repeat 2 29 0 290 139 0 0 chr13 32852748 32852791 -69020378 - L1MD2 LINE L1 -249 6110 6068 345 100 0 0 chr13 32853068 32853118 -69020051 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 694 200 0 0 chr13 32854308 32854428 -69018741 + 5S rRNA rRNA 1 120 -1 331 268 0 0 chr13 32854624 32854721 -69018448 + (TA)n Simple_repeat Simple_repeat 2 98 0 2186 125 0 3 chr13 32855325 32855628 -69017541 - AluSx SINE Alu -8 304 3 180 268 0 0 chr13 32856326 32856397 -69016772 + (CA)n Simple_repeat Simple_repeat 1 71 0 280 348 54 9 chr13 32858820 32858932 -69014237 - L2 LINE L2 0 3272 3156 25 0 0 0 chr13 32860288 32860313 -69012856 + AT_rich Low_complexity Low_complexity 1 25 0 440 65 0 0 chr13 32860418 32860480 -69012689 - Alu SINE Alu -8 303 242 948 99 0 0 chr13 32860480 32860601 -69012568 - AluSg/x SINE Alu -36 276 156 769 253 74 0 chr13 32861414 32861616 -69011553 - MER58A DNA MER1_type -1 223 7 501 281 61 64 chr13 32861946 32862671 -69010498 + L1ME4a LINE L1 3728 4447 -1699 2081 126 0 40 chr13 32862671 32862996 -69010173 + AluSx SINE Alu 1 312 0 501 281 61 64 chr13 32862996 32863288 -69009881 + L1ME4a LINE L1 4447 4738 -1408 238 289 101 0 chr13 32863310 32863459 -69009710 + L1P LINE L1 4878 5041 -1105 1071 160 35 113 chr13 32863607 32863951 -69009218 - MER33 DNA MER1_type -1 323 7 802 275 41 34 chr13 32864071 32864634 -69008535 + L1ME4a LINE L1 5410 5979 -142 243 267 20 20 chr13 32864694 32864795 -69008374 + L1MC4a LINE L1 6075 6175 -1633 225 0 0 0 chr13 32865269 32865294 -69007875 + (T)n Simple_repeat Simple_repeat 1 25 0 253 258 8 137 chr13 32867325 32867449 -69005720 + L2 LINE L2 2992 3099 -173 195 300 67 0 chr13 32869420 32869510 -69003659 + L2 LINE L2 3177 3272 0 963 255 83 9 chr13 32870433 32870759 -69002410 - MLT1J2 LTR MaLR 0 450 101 2972 180 9 4 chr13 32870801 32871346 -69001823 + MER44D DNA MER2_type 2 604 -1 233 333 11 0 chr13 32871849 32871942 -69001227 + L2 LINE L2 2765 2858 -456 39 60 0 0 chr13 32872452 32872519 -69000650 + AT_rich Low_complexity Low_complexity 1 67 0 290 242 220 8 chr13 32872614 32872746 -69000423 + MIR SINE MIR 48 207 -55 391 292 102 22 chr13 32872886 32873023 -69000146 + MIR3 SINE MIR 1 148 -60 251 238 107 0 chr13 32873181 32873265 -68999904 - L2 LINE L2 -3 3310 3218 5161 147 37 7 chr13 32873342 32874554 -68998615 + L1PA16 LINE L1 4927 6166 0 248 287 70 17 chr13 32874591 32874706 -68998463 - L2 LINE L2 -188 3125 3005 725 233 72 27 chr13 32874881 32875104 -68998065 + MER69 DNA AcHobo 153 385 -2141 2259 186 122 20 chr13 32875107 32875813 -68997356 + MER69 DNA AcHobo 1749 2526 0 209 211 0 0 chr13 32876537 32876575 -68996594 + MER91 DNA MER1_type 126 163 -27 182 309 15 0 chr13 32876646 32876714 -68996455 + MIR SINE MIR 106 174 -88 216 0 0 0 chr13 32877100 32877124 -68996045 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 2291 102 30 0 chr13 32877189 32877492 -68995677 + AluSx SINE Alu 1 312 0 380 291 36 0 chr13 32877623 32877733 -68995436 + MIR3 SINE MIR 93 206 -2 191 252 58 117 chr13 32878088 32878191 -68994978 - MIR SINE MIR -138 124 28 305 200 0 67 chr13 32880219 32880294 -68992875 - MIR SINE MIR -21 241 172 579 245 67 70 chr13 32880307 32880650 -68992519 + LTR37B LTR ERV1 7 348 -120 395 227 27 36 chr13 32880741 32880851 -68992318 - MIR SINE MIR -144 118 10 252 189 0 19 chr13 32880917 32880970 -68992199 - L2 LINE L2 0 3313 3262 185 320 33 41 chr13 32882671 32882793 -68990376 - MIR SINE MIR -70 138 18 559 306 54 61 chr13 32884114 32884559 -68988610 - LTR16C LTR ERVL -49 442 1 203 324 126 48 chr13 32885128 32885348 -68987821 - L2 LINE L2 -18 3254 3014 1024 192 43 17 chr13 32885910 32886144 -68987025 + Charlie1 DNA MER1_type 1 240 -2521 565 224 17 0 chr13 32886171 32886287 -68986882 + Charlie1 DNA MER1_type 2644 2761 0 320 173 53 13 chr13 32887555 32887630 -68985539 - MER103 DNA DNA -46 120 43 195 227 23 0 chr13 32888310 32888354 -68984815 + L3b LINE CR1 1529 1573 -10 1818 183 136 18 chr13 32889024 32889407 -68983762 + MSTA LTR MaLR 1 428 0 3421 78 48 2 chr13 32889806 32890239 -68982930 - MLT2A2 LTR ERVL 0 453 1 594 289 13 43 chr13 32890251 32890486 -68982683 - MER102a DNA MER1_type 0 330 103 186 43 0 0 chr13 32890494 32890517 -68982652 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 293 324 29 0 chr13 32890594 32890730 -68982439 + L1MEd LINE L1 2 141 -5978 1164 311 118 39 chr13 32890783 32891587 -68981582 + L1MEd LINE L1 217 1084 -5035 254 233 244 0 chr13 32891608 32891694 -68981475 + L1ME LINE L1 47 153 -5917 349 283 0 72 chr13 32891831 32891997 -68981172 + L1ME LINE L1 378 531 -5539 1176 287 69 50 chr13 32892110 32893010 -68980159 + L1ME LINE L1 526 1442 -4819 40049 74 11 7 chr13 32893023 32899137 -68974032 + L1PA6 LINE L1 11 6154 0 477 322 12 31 chr13 32899134 32899392 -68973777 + L1ME LINE L1 1431 1683 -4578 * 326 190 63 0 chr13 32899396 32899475 -68973694 + L1M4 LINE L1 5139 5222 -924 500 309 111 13 chr13 32899873 32899944 -68973225 - L2 LINE L2 -951 2363 2300 2722 16 0 3 chr13 32899944 32900248 -68972921 - AluY SINE Alu -8 303 1 500 309 111 13 chr13 32900248 32900474 -68972695 - L2 LINE L2 -1014 2300 2037 218 385 62 0 chr13 32900621 32900751 -68972418 + MER5A DNA MER1_type 49 186 -3 182 204 0 37 chr13 32900903 32900957 -68972212 + GA-rich Low_complexity Low_complexity 3 54 0 248 303 26 0 chr13 32901628 32901704 -68971465 + L2 LINE L2 3186 3263 -9 229 239 18 37 chr13 32901756 32901865 -68971304 + CT-rich Low_complexity Low_complexity 1 107 0 198 169 28 42 chr13 32901949 32902020 -68971149 + CT-rich Low_complexity Low_complexity 2 71 0 2034 123 0 14 chr13 32902247 32902557 -68970612 + AluSx SINE Alu 9 312 0 593 226 83 29 chr13 32903186 32903374 -68969795 - MIR SINE MIR -61 201 3 401 335 43 6 chr13 32903492 32903656 -68969513 - MIR SINE MIR -37 225 56 441 364 61 23 chr13 32903960 32904221 -68968948 + L2 LINE L2 2553 2823 -491 2478 68 3 10 chr13 32905199 32905510 -68967659 - AluSg1 SINE Alu 0 309 1 228 317 146 8 chr13 32905700 32905823 -68967346 + MLT1I LTR MaLR 81 220 -189 284 281 0 0 chr13 32906564 32906628 -68966541 + MLT1I LTR MaLR 343 406 -3 1946 129 4 4 chr13 32906758 32907038 -68966131 + AluJo SINE Alu 1 280 -32 334 386 0 0 chr13 32908005 32908137 -68965032 - MIR3 SINE MIR 0 208 77 1456 208 74 104 chr13 32908449 32909035 -68964134 + MLT1F1 LTR MaLR 1 567 0 924 165 0 0 chr13 32909248 32909381 -68963788 + FLAM_C SINE Alu 1 133 0 13120 168 95 11 chr13 32910165 32913545 -68959624 + L1PA16 LINE L1 6 3670 -3192 4558 116 73 85 chr13 32913545 32914971 -68958198 + pTR5 LTR ERV1 66 2438 0 11242 185 16 14 chr13 32914971 32915064 -68958105 + L1PA16 LINE L1 3666 3757 -3125 2364 85 0 0 chr13 32915064 32915358 -68957811 + AluY SINE Alu 1 294 -17 11242 185 16 14 chr13 32915358 32916711 -68956458 + L1PA16 LINE L1 3757 5105 -1777 221 0 35 0 chr13 32916711 32916740 -68956429 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 11242 185 16 14 chr13 32916740 32918493 -68954676 + L1PA16 LINE L1 5105 6849 -33 207 139 0 0 chr13 32918634 32918670 -68954499 + (TTC)n Simple_repeat Simple_repeat 3 38 0 228 281 0 0 chr13 32918670 32918727 -68954442 + CT-rich Low_complexity Low_complexity 1 57 0 207 0 0 0 chr13 32919158 32919181 -68953988 + (A)n Simple_repeat Simple_repeat 1 23 0 185 301 159 40 chr13 32919769 32919945 -68953224 + MIR3 SINE MIR 6 202 -6 414 0 0 0 chr13 32920041 32920087 -68953082 + (CA)n Simple_repeat Simple_repeat 1 46 0 229 347 40 0 chr13 32920522 32920597 -68952572 - MIR SINE MIR -132 130 53 338 293 179 14 chr13 32921241 32921381 -68951788 - MIR SINE MIR -21 241 79 4980 165 47 3 chr13 32921849 32922830 -68950339 - L1MB3 LINE L1 -1 6182 5152 831 238 137 4 chr13 32922971 32923219 -68949950 - LTR50 LTR ERVL -5 790 510 1028 183 114 26 chr13 32923259 32923532 -68949637 - LTR50 LTR ERVL -498 297 1 271 236 97 0 chr13 32923577 32923649 -68949520 + L2 LINE L2 3230 3308 -5 643 267 111 9 chr13 32923808 32924025 -68949144 - MIR SINE MIR -12 250 12 228 100 0 0 chr13 32924201 32924241 -68948928 + (CCTG)n Simple_repeat Simple_repeat 2 41 0 252 167 0 0 chr13 32924243 32924291 -68948878 + CT-rich Low_complexity Low_complexity 2 49 0 822 209 117 0 chr13 32924541 32924737 -68948432 + MER58A DNA MER1_type 6 224 0 328 321 10 62 chr13 32925897 32926090 -68947079 - MER5A DNA MER1_type 0 189 7 340 214 12 12 chr13 32926826 32926910 -68946259 + MER117 DNA MER1_type 4 87 -110 485 308 117 71 chr13 32928033 32928399 -68944770 - L2 LINE L2 -4 3268 2876 486 33 0 0 chr13 32928399 32928459 -68944710 + (TG)n Simple_repeat Simple_repeat 2 61 0 485 308 117 71 chr13 32928459 32928568 -68944601 - L2 LINE L2 -396 2876 2773 1263 166 36 5 chr13 32928892 32929115 -68944054 + MER97b DNA MER1_type? 8 237 -816 4950 153 25 29 chr13 32929209 32930079 -68943090 - Tigger1 DNA MER2_type -1551 867 1 1333 267 135 42 chr13 32930081 32930924 -68942245 - L1MDa LINE L1 -2294 3786 2865 * 5688 171 34 8 chr13 32930900 32932522 -68940647 - L1PA13 LINE L1 0 6097 2160 281 274 53 38 chr13 32932540 32932819 -68940350 - L1MDa LINE L1 -4879 1201 947 852 223 13 0 chr13 32933277 32933434 -68939735 - MER45A DNA AcHobo -14 164 6 391 309 123 12 chr13 32933468 32933630 -68939539 + MIR SINE MIR 34 213 -49 716 224 6 38 chr13 32934118 32934301 -68938868 - MER5B DNA MER1_type 0 178 2 191 359 13 0 chr13 32934564 32934642 -68938527 + MIR SINE MIR 184 262 0 2131 114 10 3 chr13 32934794 32935092 -68938077 - AluSg SINE Alu -10 300 1 1738 121 103 60 chr13 32936053 32936575 -68936594 - MER51A LTR ERV1 0 634 1 407 194 0 0 chr13 32937112 32937179 -68935990 + Tigger2 DNA MER2_type 3 69 -2649 * 2249 97 77 6 chr13 32937177 32937527 -68935642 + Tigger2 DNA MER2_type 2280 2654 -64 5669 127 3 11 chr13 32937528 32938400 -68934769 + L1PA15 LINE L1 5299 6163 -2 279 205 13 64 chr13 32938427 32938505 -68934664 + Tigger2 DNA MER2_type 2635 2708 -10 538 219 24 71 chr13 32938874 32939043 -68934126 - MER103 DNA DNA -2 164 4 1920 121 21 38 chr13 32939624 32939964 -68933205 - L1MA4A LINE L1 0 6303 5970 232 326 139 8 chr13 32941290 32941419 -68931750 - MLT1I LTR MaLR -189 220 75 2493 64 3 10 chr13 32941602 32941913 -68931256 + AluSg1 SINE Alu 1 309 0 512 252 86 14 chr13 32943016 32943226 -68929943 - L1M4 LINE L1 -2193 3953 3729 619 239 85 17 chr13 32943558 32943734 -68929435 + MER58A DNA MER1_type 7 194 -30 24 0 0 0 chr13 32944228 32944252 -68928917 + AT_rich Low_complexity Low_complexity 1 24 0 216 326 62 62 chr13 32948319 32948448 -68924721 + L2 LINE L2 3142 3270 -2 235 245 0 0 chr13 32949334 32949387 -68923782 + MER89 LTR ERV1 11 63 -496 3159 126 61 29 chr13 32949416 32949972 -68923197 - MER4B LTR ERV1 -36 574 1 650 307 25 12 chr13 32949975 32950216 -68922953 + MER89 LTR ERV1 197 440 -119 691 271 87 26 chr13 32950378 32950644 -68922525 - MLT1L LTR MaLR -239 376 95 626 236 28 104 chr13 32950867 32951155 -68922014 + MLT1K LTR MaLR 311 576 -12 228 35 0 0 chr13 32952417 32952446 -68920723 + (CA)n Simple_repeat Simple_repeat 1 29 0 345 100 0 0 chr13 32953452 32953502 -68919667 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 6199 112 7 16 chr13 32954876 32955857 -68917312 + L1P LINE L1 1111 2082 -4064 759 297 25 65 chr13 32957103 32957470 -68915699 - LTR16C LTR ERVL -103 388 37 511 253 41 66 chr13 32957521 32957741 -68915428 - MIR SINE MIR -19 243 33 228 35 0 0 chr13 32959109 32959138 -68914031 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 326 62 62 chr13 32960259 32960388 -68912781 + L2 LINE L2 3142 3270 -2 702 309 88 29 chr13 32961323 32961698 -68911471 + MLT1I LTR MaLR 11 407 -2 346 263 27 43 chr13 32962301 32962487 -68910682 - L1ME4a LINE L1 -4 6117 5935 28 0 0 0 chr13 32962500 32962528 -68910641 + AT_rich Low_complexity Low_complexity 1 28 0 1725 209 16 29 chr13 32962529 32962907 -68910262 + MLT1A2 LTR MaLR 1 373 -1 270 0 0 0 chr13 32962907 32962937 -68910232 + (TG)n Simple_repeat Simple_repeat 2 31 0 331 281 83 31 chr13 32963179 32963371 -68909798 + L1ME LINE L1 5616 5817 -304 1146 180 25 0 chr13 32963380 32963580 -68909589 + L1MD2 LINE L1 6148 6352 -7 572 288 11 5 chr13 32964101 32964285 -68908884 - MLT1H LTR MaLR -353 196 12 213 152 0 0 chr13 32964348 32964381 -68908788 + L2 LINE L2 1762 1794 -1520 2043 163 41 27 chr13 32964888 32965432 -68907737 - MLT2A2 LTR ERVL 0 554 1 222 266 64 55 chr13 32965631 32965740 -68907429 + L3b LINE CR1 1272 1381 -202 311 235 92 31 chr13 32966081 32966179 -68906990 + MLT1H LTR MaLR 93 196 -353 22 0 0 0 chr13 32966892 32966914 -68906255 + AT_rich Low_complexity Low_complexity 1 22 0 526 232 168 7 chr13 32968218 32968373 -68904796 - MER5A DNA MER1_type -1 188 9 374 288 16 53 chr13 32969640 32969826 -68903343 - MIR SINE MIR -56 206 27 2546 214 58 25 chr13 32970940 32971546 -68901623 + MLT1E2 LTR MaLR 1 626 0 264 324 0 14 chr13 32972988 32973062 -68900107 + L2 LINE L2 3200 3272 0 318 285 58 36 chr13 32974535 32974672 -68898497 + MIR SINE MIR 117 256 -6 548 324 79 41 chr13 32975671 32975986 -68897183 - L3 LINE CR1 -4 1573 1247 330 286 64 29 chr13 32975997 32976137 -68897032 + Charlie8 DNA MER1_type 46 190 -2227 1364 195 73 0 chr13 32976140 32976386 -68896783 + Tigger7 DNA MER2_type 4 267 -466 531 161 9 89 chr13 32976381 32976493 -68896676 + Tigger7 DNA MER2_type 2385 2487 0 * 393 143 14 0 chr13 32976496 32976566 -68896603 + Charlie8 DNA MER1_type 205 275 -2142 655 223 44 58 chr13 32977161 32977367 -68895802 + MIR SINE MIR 41 243 -19 1333 278 24 49 chr13 32977418 32977885 -68895284 + LTR16C LTR ERVL 37 491 0 327 284 37 28 chr13 32977885 32977994 -68895175 + HERV16 LTR ERVL 1 110 -4886 930 351 44 22 chr13 32978156 32978705 -68894464 + ERVL LTR ERVL 4469 5029 -735 2022 117 78 0 chr13 32978971 32979254 -68893915 - AluSx SINE Alu -7 305 1 1898 164 0 25 chr13 32979798 32980190 -68892979 + AluJo SINE Alu 3 386 0 550 258 0 0 chr13 32980656 32980776 -68892393 - MIR SINE MIR -31 231 112 2351 93 3 3 chr13 32980887 32981198 -68891971 + AluSq SINE Alu 1 311 -2 237 33 0 0 chr13 32981285 32981315 -68891854 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 266 210 16 chr13 32981371 32981495 -68891674 + MIR3 SINE MIR 10 157 -51 405 221 16 33 chr13 32982421 32982437 -68890732 - L1MA10 LINE L1 0 6334 6319 3098 222 86 24 chr13 32982437 32983950 -68889219 - L1ME1 LINE L1 -5 6161 4550 1750 152 30 20 chr13 32983959 32984262 -68888907 - AluJb SINE Alu -6 306 1 460 315 172 31 chr13 32984454 32984901 -68888268 + MLT1H LTR MaLR 40 549 0 30 0 0 0 chr13 32985334 32985364 -68887805 + AT_rich Low_complexity Low_complexity 1 30 0 428 320 121 10 chr13 32986228 32986434 -68886735 + MIR SINE MIR 34 262 0 355 236 19 9 chr13 32986713 32986819 -68886350 + L1MC4 LINE L1 7463 7569 -473 641 134 21 10 chr13 32986841 32986938 -68886231 + FLAM_C SINE Alu 28 125 -18 629 247 91 38 chr13 32986952 32987215 -68885954 + L1MC4 LINE L1 7578 7854 -188 379 205 0 18 chr13 32987471 32987583 -68885586 + (TA)n Simple_repeat Simple_repeat 2 111 0 240 314 93 0 chr13 32987679 32987765 -68885404 - L2 LINE L2 -60 3212 3119 889 198 111 133 chr13 32989360 32989872 -68883297 + LTR28 LTR ERV1 1 1303 -452 288 222 74 37 chr13 32989959 32990067 -68883102 + MARNA DNA Mariner 439 550 -36 1342 227 78 21 chr13 32990100 32990435 -68882734 - MER89 LTR ERV1 -9 550 197 3209 126 59 29 chr13 32990438 32990995 -68882174 + MER4B LTR ERV1 1 574 -36 240 245 0 0 chr13 32991024 32991077 -68882092 - MER89 LTR ERV1 -496 63 11 1364 160 118 43 chr13 32991724 32992212 -68880957 - MER34B LTR ERV1 0 565 2 454 241 12 82 chr13 32993384 32993554 -68879615 - L1MC4 LINE L1 -787 7255 7098 1368 258 86 23 chr13 32993757 32994360 -68878809 - L2 LINE L2 0 3313 2682 234 370 24 8 chr13 32994369 32994496 -68878673 - MIR SINE MIR -88 174 46 1398 157 76 30 chr13 32995248 32995510 -68877659 + AluJo SINE Alu 35 308 -4 399 344 52 10 chr13 32995796 32995988 -68877181 - MIR SINE MIR -35 227 28 356 182 16 107 chr13 32996409 32996530 -68876639 - MER103 DNA DNA -49 117 8 294 282 43 26 chr13 32996617 32996734 -68876435 + L2 LINE L2 3191 3309 -4 293 403 45 0 chr13 32997316 32997450 -68875719 - MIR3 SINE MIR -35 173 34 211 299 11 46 chr13 32997545 32997632 -68875537 - MIR3 SINE MIR -15 193 110 716 151 277 18 chr13 32997664 32997830 -68875339 + MER3 DNA MER1_type 1 209 0 2961 132 79 2 chr13 32998962 32999432 -68873737 + L1PA16 LINE L1 5657 6162 -4 862 248 47 23 chr13 33000902 33001201 -68871968 + L1MC5 LINE L1 7608 7913 -48 189 107 0 0 chr13 33002321 33002349 -68870820 + (TTTTTA)n Simple_repeat Simple_repeat 1 28 0 186 389 22 17 chr13 33002772 33002919 -68870250 - MIR3 SINE MIR -79 129 12 489 319 56 27 chr13 33003775 33004166 -68869003 + MLT1J LTR MaLR 65 507 -4 394 225 167 25 chr13 33004936 33005109 -68868060 - L1MD3 LINE L1 0 8042 7860 267 300 106 38 chr13 33005734 33005808 -68867361 - MER5B DNA MER1_type -6 172 105 378 0 0 0 chr13 33005808 33005850 -68867319 + (TG)n Simple_repeat Simple_repeat 1 42 0 348 24 0 0 chr13 33005849 33005890 -68867279 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 267 300 106 38 chr13 33005850 33005975 -68867194 - MER5B DNA MER1_type -73 105 2 476 260 23 23 chr13 33006155 33006300 -68866869 - MER5A DNA MER1_type 0 189 34 235 304 72 56 chr13 33006205 33006330 -68866839 + MER5A DNA MER1_type 61 187 -2 * 358 300 18 9 chr13 33007704 33007814 -68865355 + MIR SINE MIR 23 133 -129 184 277 44 109 chr13 33009026 33009163 -68864006 - L2 LINE L2 -22 3291 3164 201 227 227 45 chr13 33009344 33009454 -68863715 + MER5A DNA MER1_type 12 141 -48 604 308 174 20 chr13 33009761 33010118 -68863051 - L3 LINE CR1 -12 1565 1154 1920 121 21 38 chr13 33010713 33011053 -68862116 + L1MA4A LINE L1 5970 6303 0 391 273 99 84 chr13 33011808 33012141 -68861028 + MLT1J LTR MaLR 124 461 -50 1456 169 60 18 chr13 33012152 33012436 -68860733 + AluJo SINE Alu 8 303 -9 1638 267 68 45 chr13 33012474 33013410 -68859759 - L2 LINE L2 -2 3311 2353 191 253 213 67 chr13 33015353 33015503 -68857666 + MIR3 SINE MIR 30 201 -7 349 190 76 38 chr13 33015743 33015822 -68857347 - Charlie3 DNA MER1_type -2623 87 6 * 3573 113 16 19 chr13 33015783 33016295 -68856874 + MER1A DNA MER1_type 20 529 0 2129 154 21 68 chr13 33016295 33016718 -68856451 - MSTB1 LTR MaLR -22 410 8 330 167 0 0 chr13 33016761 33016821 -68856348 + (TA)n Simple_repeat Simple_repeat 2 61 0 337 332 106 42 chr13 33017662 33017879 -68855290 + MIR SINE MIR 21 251 -11 863 276 68 52 chr13 33019074 33019501 -68853668 - LTR16A LTR ERVL 0 450 17 439 319 26 53 chr13 33019642 33019912 -68853257 - ERVL LTR ERVL -381 5383 5124 2732 134 3 0 chr13 33019912 33020286 -68852883 - THE1C LTR MaLR 0 375 1 439 319 26 53 chr13 33020286 33020394 -68852775 - ERVL LTR ERVL -640 5124 5015 2135 142 44 0 chr13 33020475 33020813 -68852356 - THE1B LTR MaLR -10 354 2 425 287 19 0 chr13 33020825 33020933 -68852236 - ERVL LTR ERVL -921 4843 4734 272 297 95 54 chr13 33021372 33021541 -68851628 + MER5A DNA MER1_type 1 186 -3 356 322 8 25 chr13 33022455 33022576 -68850593 - MIR SINE MIR -124 138 20 343 273 45 0 chr13 33022700 33022810 -68850359 + MIR SINE MIR 148 262 0 256 245 0 0 chr13 33023554 33023607 -68849562 + MER5B DNA MER1_type 4 56 -122 2037 150 3 3 chr13 33024133 33024427 -68848742 + AluSx SINE Alu 2 295 -17 73 57 0 0 chr13 33024676 33024798 -68848371 + AT_rich Low_complexity Low_complexity 1 122 0 575 271 92 70 chr13 33024919 33025550 -68847619 + L1MDa LINE L1 1281 1925 -4615 3111 201 48 36 chr13 33025606 33026173 -68846996 + L1ME1 LINE L1 5431 5989 -177 2830 0 3 3 chr13 33026173 33026480 -68846689 + AluYa5 SINE Alu 1 307 -4 1692 188 40 77 chr13 33026488 33026940 -68846229 + MER63B DNA MER1_type 1 435 -1 3111 201 48 36 chr13 33026940 33027085 -68846084 + L1ME1 LINE L1 5995 6161 -5 394 231 242 10 chr13 33027095 33027257 -68845912 + L1MC4a LINE L1 5600 5779 -342 1349 144 35 5 chr13 33027257 33027459 -68845710 + MER6B DNA MER2_type 1 208 -2 394 231 242 10 chr13 33027459 33027489 -68845680 + L1MC4a LINE L1 5779 5801 -320 257 341 38 8 chr13 33027708 33027840 -68845329 - MIR3 SINE MIR -19 189 54 673 216 0 0 chr13 33028115 33028249 -68844920 - L1PB4 LINE L1 0 6156 6023 215 191 172 89 chr13 33031014 33031156 -68842013 - MIR SINE MIR -76 132 21 297 311 121 37 chr13 33031735 33031969 -68841200 - MIR SINE MIR -5 257 5 265 222 16 16 chr13 33036487 33036550 -68836619 + L2 LINE L2 2501 2563 -751 3527 130 4 54 chr13 33036567 33037230 -68835939 + MER41B LTR ERV1 6 554 0 340 241 0 71 chr13 33037251 33037363 -68835806 + L2 LINE L2 2594 2697 -617 1189 136 23 0 chr13 33037402 33037579 -68835590 + L1MA4A LINE L1 6065 6245 -58 1386 115 23 0 chr13 33037404 33037621 -68835548 + L1MA4A LINE L1 6067 6288 -15 2025 144 39 33 chr13 33037626 33037988 -68835181 - THE1B LTR MaLR 0 364 1 2888 173 12 4 chr13 33038206 33038767 -68834402 + L1MB3 LINE L1 5616 6181 -2 204 273 0 0 chr13 33038774 33038818 -68834351 + L2 LINE L2 2736 2779 -535 222 365 26 0 chr13 33038831 33038946 -68834223 - MER5B DNA MER1_type 0 178 61 1790 80 0 0 chr13 33039121 33039359 -68833810 + L1PA8 LINE L1 5931 6168 -4 360 310 26 65 chr13 33039864 33040019 -68833150 - MIR3 SINE MIR -46 162 14 341 324 29 24 chr13 33040294 33040464 -68832705 + L1MC4a LINE L1 5744 5914 -1894 876 297 122 34 chr13 33041204 33041918 -68831251 - L2 LINE L2 0 3313 2530 443 262 133 38 chr13 33041932 33042142 -68831027 + L2 LINE L2 3080 3309 -4 1630 275 96 21 chr13 33042178 33042354 -68830815 - L2 LINE L2 -774 2540 2378 2421 146 59 0 chr13 33042354 33042758 -68830411 + MSTC LTR MaLR 1 428 0 1630 275 96 21 chr13 33042758 33043188 -68829981 - L2 LINE L2 -936 2378 1889 1656 225 34 5 chr13 33043203 33043589 -68829580 - MLT1C LTR MaLR 0 467 71 935 280 69 24 chr13 33043645 33044020 -68829149 - L2 LINE L2 -1471 1843 1452 197 341 34 57 chr13 33044031 33044119 -68829050 - L2 LINE L2 -50 3222 3137 459 0 0 0 chr13 33044696 33044747 -68828422 + (CA)n Simple_repeat Simple_repeat 1 51 0 4075 134 18 5 chr13 33044819 33045490 -68827679 + L1PA16 LINE L1 5485 6164 -2 284 310 103 35 chr13 33046009 33046183 -68826986 + MIR3 SINE MIR 18 203 -5 21 0 0 0 chr13 33047655 33047676 -68825493 + AT_rich Low_complexity Low_complexity 1 21 0 371 162 29 0 chr13 33047835 33047903 -68825266 + AluJ/FRAM SINE Alu 231 300 -2 429 206 130 101 chr13 33048228 33048448 -68824721 + L1MC5 LINE L1 6643 6855 -1106 2525 54 0 3 chr13 33048448 33048746 -68824423 + AluY SINE Alu 1 297 -14 429 206 130 101 chr13 33048746 33049312 -68823857 + L1MC5 LINE L1 6855 7625 -336 277 361 108 0 chr13 33049527 33049657 -68823512 + MIR3 SINE MIR 2 145 -63 570 191 67 49 chr13 33050299 33050512 -68822657 - LTR45B LTR ERV1 0 606 296 233 333 40 0 chr13 33051003 33051078 -68822091 + MIR3 SINE MIR 104 181 -27 3698 124 0 6 chr13 33051696 33052226 -68820943 + MER1A DNA MER1_type 1 527 0 706 181 9 0 chr13 33052866 33052982 -68820187 + FLAM_A SINE Alu 1 117 -16 324 0 0 0 chr13 33052986 33053022 -68820147 + (CA)n Simple_repeat Simple_repeat 2 37 0 2208 131 0 0 chr13 33054246 33054552 -68818617 - AluSx SINE Alu -6 306 1 1003 142 35 104 chr13 33055249 33055537 -68817632 - ORSL DNA AcHobo -2 273 6 1614 172 20 16 chr13 33056917 33057220 -68815949 + AluJo SINE Alu 1 304 -8 5434 56 1 0 chr13 33057281 33057958 -68815211 + L1PA5 LINE L1 5462 6139 -15 180 97 0 0 chr13 33057958 33057989 -68815180 + (TA)n Simple_repeat Simple_repeat 1 31 0 1104 249 25 63 chr13 33058108 33058190 -68814979 - L1MC4a LINE L1 -1919 5889 5805 3551 144 54 2 chr13 33058190 33058816 -68814353 - L1MC1 LINE L1 -5 6328 5670 1104 249 25 63 chr13 33058816 33059130 -68814039 - L1MC4a LINE L1 -2003 5805 5508 330 234 101 8 chr13 33059874 33059985 -68813184 + MLT1E LTR MaLR 1 116 -450 222 37 0 0 chr13 33059990 33060017 -68813152 + (A)n Simple_repeat Simple_repeat 1 27 0 247 254 8 82 chr13 33060021 33060143 -68813026 + MLT1F1 LTR MaLR 128 240 -327 * 518 228 16 16 chr13 33060133 33060260 -68812909 + MLT1F1 LTR MaLR 388 514 -53 2842 169 249 1 chr13 33060270 33060982 -68812187 - L1PB3 LINE L1 -1526 4620 3733 4597 150 40 3 chr13 33060990 33062306 -68810863 + L1PB3 LINE L1 4641 6008 -146 238 326 11 21 chr13 33062517 33062612 -68810557 + MIR SINE MIR 21 114 -148 2133 183 96 92 chr13 33062656 33063445 -68809724 - L1MC5 LINE L1 -78 7883 7106 1511 46 0 0 chr13 33063445 33063644 -68809525 + AluY SINE Alu 106 304 0 2133 183 96 92 chr13 33063644 33063901 -68809268 - L1MC5 LINE L1 -855 7106 6852 510 231 9 0 chr13 33063903 33064011 -68809158 + MER81 DNA DNA 6 114 0 640 217 0 13 chr13 33064013 33064165 -68809004 - L1MC5 LINE L1 -1116 6845 6696 520 264 6 13 chr13 33064167 33064326 -68808843 + MIR SINE MIR 105 262 0 309 300 142 34 chr13 33066342 33066475 -68806694 - L1 LINE L1 -3351 2795 2678 446 0 19 0 chr13 33066475 33066529 -68806640 + (TG)n Simple_repeat Simple_repeat 2 56 0 309 300 142 34 chr13 33066529 33066782 -68806387 - L1 LINE L1 -3468 2678 2367 1606 204 40 3 chr13 33066800 33067152 -68806017 - MLT1A1 LTR MaLR 0 365 1 325 306 47 43 chr13 33067532 33067785 -68805384 - HAL1b LINE L1 -148 2359 709 546 237 180 34 chr13 33067984 33068334 -68804835 - HAL1b LINE L1 -740 608 208 585 232 55 24 chr13 33070045 33070209 -68802960 - MIR SINE MIR -51 211 43 191 355 26 13 chr13 33070283 33070435 -68802734 + L2 LINE L2 1846 1999 -1315 1897 172 0 3 chr13 33071125 33071416 -68801753 - AluJo SINE Alu -22 290 1 1609 179 10 26 chr13 33071546 33071854 -68801315 - AluJo SINE Alu -9 303 1 535 217 20 35 chr13 33071873 33072071 -68801098 + L1MC5 LINE L1 7603 7797 -164 193 315 31 63 chr13 33072353 33072480 -68800689 - MIR SINE MIR -3 259 137 503 311 71 34 chr13 33072763 33073001 -68800168 + MIR SINE MIR 16 262 0 1032 174 64 4 chr13 33073137 33073401 -68799768 - MER33 DNA MER1_type 0 324 45 314 286 105 0 chr13 33073852 33073957 -68799212 - L2 LINE L2 -20 3293 3178 183 270 0 27 chr13 33074132 33074206 -68798963 - L2 LINE L2 -328 2985 2914 217 270 63 0 chr13 33074537 33074600 -68798569 + L2 LINE L2 3239 3305 -8 496 299 55 20 chr13 33075253 33075454 -68797715 - MIR SINE MIR -24 238 31 486 182 161 14 chr13 33075817 33075960 -68797209 + MIR SINE MIR 63 226 -36 266 270 82 66 chr13 33078826 33079022 -68794147 + L1ME LINE L1 5675 5873 -248 22 56 0 0 chr13 33079086 33079122 -68794047 + AT_rich Low_complexity Low_complexity 1 36 0 564 130 0 0 chr13 33079220 33079335 -68793834 + (TA)n Simple_repeat Simple_repeat 2 116 0 3862 133 24 13 chr13 33079336 33079967 -68793202 - L1PA16 LINE L1 -9 6157 5520 2338 110 0 0 chr13 33080347 33080646 -68792523 + AluSg SINE Alu 1 299 -11 2114 128 3 0 chr13 33081277 33081574 -68791595 - AluSc SINE Alu -11 298 1 212 237 176 38 chr13 33081865 33082021 -68791148 - MIR SINE MIR -60 202 22 5120 165 47 48 chr13 33082542 33082810 -68790359 + Ricksha_a DNA DNA 1 268 -2983 1963 163 0 16 chr13 33082810 33083117 -68790052 + AluJo SINE Alu 1 302 -10 5120 165 47 48 chr13 33083117 33084023 -68789146 + Ricksha_a DNA DNA 268 1173 -8 2211 114 0 19 chr13 33084199 33084516 -68788653 + AluSx SINE Alu 1 311 -1 546 211 166 9 chr13 33084712 33084935 -68788234 - L1ME4a LINE L1 -3 6118 5861 224 380 42 0 chr13 33086385 33086527 -68786642 + MIR SINE MIR 110 257 -5 409 271 19 19 chr13 33087722 33087829 -68785340 - MIR SINE MIR -120 142 36 802 276 15 0 chr13 33090865 33091068 -68782101 - MIR SINE MIR -7 255 50 347 249 70 19 chr13 33092823 33093036 -68780133 + L1MC/D LINE L1 5174 5397 -749 589 288 46 14 chr13 33093105 33093324 -68779845 + L1MC/D LINE L1 5555 5780 -2028 292 267 11 0 chr13 33093325 33093415 -68779754 - MER46C DNA MER2_type 0 338 248 237 233 86 52 chr13 33093433 33093549 -68779620 - MER46C DNA MER2_type -218 120 1 2702 125 184 71 chr13 33093676 33094774 -68778395 + Tigger3b DNA MER2_type 7 1231 -1 468 257 235 0 chr13 33095050 33095233 -68777936 - MIR SINE MIR -16 246 21 1001 219 78 14 chr13 33096037 33096060 -68777109 + MIR SINE MIR 25 45 -217 501 257 9 9 chr13 33096060 33096173 -68776996 - MER81 DNA DNA 0 114 2 1001 219 78 14 chr13 33096173 33096368 -68776801 + MIR SINE MIR 45 257 -5 292 163 0 0 chr13 33096617 33096666 -68776503 + L2 LINE L2 3265 3313 0 522 276 129 50 chr13 33097870 33098233 -68774936 - MER115 DNA AcHobo 0 693 302 1519 186 18 87 chr13 33101752 33102144 -68771025 + MLT1A1 LTR MaLR 1 365 0 965 238 70 0 chr13 33102423 33102637 -68770532 + MIR SINE MIR 34 262 0 465 117 0 13 chr13 33102926 33103003 -68770166 - MLT1B LTR MaLR 0 390 315 * 965 232 45 80 chr13 33102999 33103461 -68769708 - MER20B DNA MER1_type -335 448 3 202 167 0 0 chr13 33103512 33103548 -68769621 + L2 LINE L2 3277 3312 -1 1877 158 14 0 chr13 33103694 33103979 -68769190 - AluJo SINE Alu -22 290 2 746 220 36 12 chr13 33104496 33104664 -68768505 + MER5B DNA MER1_type 7 178 0 252 313 268 0 chr13 33104783 33104895 -68768274 - MER5A DNA MER1_type 0 189 48 4384 157 4 11 chr13 33105131 33105882 -68767287 + L1MB5 LINE L1 5421 6166 -8 326 297 122 68 chr13 33107700 33107996 -68765173 - L2 LINE L2 -12 3301 2990 2263 103 0 17 chr13 33108900 33109202 -68763967 + AluSx SINE Alu 1 297 -15 183 42 0 0 chr13 33109740 33109764 -68763405 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 544 335 26 9 chr13 33110209 33110436 -68762733 + MIR SINE MIR 20 250 -12 251 309 138 20 chr13 33110571 33110723 -68762446 + MIR3 SINE MIR 2 171 -37 193 271 119 0 chr13 33110726 33110785 -68762384 + MIR SINE MIR 49 114 -148 293 147 274 11 chr13 33111906 33112001 -68761168 + L2 LINE L2 3192 3311 -2 21 0 0 0 chr13 33112008 33112029 -68761140 + AT_rich Low_complexity Low_complexity 1 21 0 395 261 8 0 chr13 33112245 33112379 -68760790 + (CA)n Simple_repeat Simple_repeat 2 136 0 369 286 0 0 chr13 33112466 33112613 -68760556 + (CATATA)n Simple_repeat Simple_repeat 4 150 0 515 357 0 11 chr13 33112617 33112799 -68760370 + (CA)n Simple_repeat Simple_repeat 1 180 0 1160 269 87 18 chr13 33113644 33114034 -68759135 - L2 LINE L2 -3 3310 2894 612 277 48 68 chr13 33114034 33114326 -68758843 - Charlie8 DNA MER1_type -2131 286 1 2281 82 0 30 chr13 33114485 33114789 -68758380 - AluY SINE Alu -16 295 1 316 296 0 11 chr13 33116855 33116943 -68756226 + MIR SINE MIR 75 161 -101 1070 194 35 112 chr13 33117532 33117908 -68755261 + MLT1A1 LTR MaLR 19 365 0 216 0 0 0 chr13 33118185 33118209 -68754960 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 308 187 49 106 chr13 33118745 33118868 -68754301 + HAL1 LINE L1 902 1017 -1490 359 330 30 15 chr13 33118868 33119132 -68754037 + L1MEc LINE L1 967 1234 -4971 22 35 0 0 chr13 33119159 33119188 -68753981 + AT_rich Low_complexity Low_complexity 1 29 0 1462 295 83 30 chr13 33119283 33120409 -68752760 + L1ME2 LINE L1 580 1764 -4632 * 2636 239 43 20 chr13 33120394 33121423 -68751746 + L1ME2 LINE L1 2472 3523 -2692 2327 223 24 38 chr13 33121417 33122130 -68751039 + L1ME2 LINE L1 5497 6199 -34 * 4092 133 18 28 chr13 33122132 33122876 -68750293 + L1MA8 LINE L1 5552 6287 -4 761 271 69 8 chr13 33122948 33123195 -68749974 + L2 LINE L2 1693 1954 -1360 840 187 7 0 chr13 33123195 33123345 -68749824 + MLT1B LTR MaLR 240 390 0 238 277 21 0 chr13 33123345 33123439 -68749730 + L1MEc LINE L1 4408 4503 -1712 256 295 38 48 chr13 33123457 33123562 -68749607 + L2 LINE L2 3119 3222 -50 520 269 146 56 chr13 33123931 33124363 -68748806 + L2 LINE L2 2843 3313 0 180 176 0 0 chr13 33124661 33124695 -68748474 + (CTGGGG)n Simple_repeat Simple_repeat 1 34 0 350 181 0 0 chr13 33125163 33125235 -68747934 + (TG)n Simple_repeat Simple_repeat 1 72 0 303 288 158 5 chr13 33125631 33125815 -68747354 + L1MEc LINE L1 4891 5102 -1113 318 50 0 0 chr13 33126043 33126083 -68747086 + (CA)n Simple_repeat Simple_repeat 2 41 0 339 311 134 0 chr13 33126095 33126214 -68746955 - MIR SINE MIR -119 143 9 243 345 21 99 chr13 33127595 33127737 -68745432 + L2 LINE L2 3127 3257 -15 216 67 0 0 chr13 33127761 33127791 -68745378 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 185 80 0 0 chr13 33128097 33128122 -68745047 + L3b LINE CR1 1434 1458 -125 636 198 101 128 chr13 33128190 33128558 -68744611 - MLT1J LTR MaLR 0 511 154 415 118 0 24 chr13 33128560 33128645 -68744524 + Tigger2 DNA MER2_type 2467 2549 -169 7875 120 38 25 chr13 33128655 33129992 -68743177 - Tigger2 DNA MER2_type -231 2487 1134 202 270 0 0 chr13 33129992 33130066 -68743103 + T-rich Low_complexity Low_complexity 1 74 0 7197 23 0 0 chr13 33130066 33130938 -68742231 - L1PA3 LINE L1 0 6155 5284 * 8102 28 1 0 chr13 33130937 33131974 -68741195 + L1P LINE L1 2765 3802 -2344 3709 130 58 1 chr13 33131974 33133025 -68740144 - Tigger2 DNA MER2_type -1576 1142 1 192 276 110 76 chr13 33134322 33134467 -68738702 - L2 LINE L2 -1401 1913 1764 194 282 128 0 chr13 33134931 33135009 -68738160 + MIR SINE MIR 175 262 0 217 341 77 40 chr13 33135603 33135876 -68737293 - L2 LINE L2 -8 3305 3023 372 281 43 36 chr13 33136140 33136279 -68736890 - MIR3 SINE MIR -55 153 14 361 167 0 0 chr13 33137429 33137489 -68735680 - MER81 DNA DNA -1 113 54 1260 175 8 4 chr13 33137802 33138048 -68735121 - MLT1D LTR MaLR -258 247 1 266 0 29 0 chr13 33138579 33138613 -68734556 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9818 25 0 0 chr13 33138613 33140535 -68732634 - L1PA4 LINE L1 -8 6147 4226 440 283 157 0 chr13 33143184 33143350 -68729819 + MIR SINE MIR 71 262 0 212 314 58 35 chr13 33144026 33144112 -68729057 - L2 LINE L2 -17 3296 3209 810 229 25 15 chr13 33144449 33144650 -68728519 + MIR SINE MIR 60 262 0 2311 113 0 0 chr13 33144661 33144970 -68728199 - AluSg SINE Alu -1 309 1 188 372 47 12 chr13 33145186 33145236 -68727933 + MIR SINE MIR 60 116 -146 546 206 109 29 chr13 33145236 33145411 -68727758 - MER53 DNA DNA 0 189 1 188 372 47 12 chr13 33145411 33145446 -68727723 + MIR SINE MIR 116 148 -114 350 294 14 7 chr13 33145514 33145657 -68727512 - MER103 DNA DNA -3 163 20 224 328 31 0 chr13 33145704 33145768 -68727401 + L3b LINE CR1 1517 1582 -1 5764 221 57 37 chr13 33146235 33148196 -68724973 + L1M4 LINE L1 2 2135 -4690 2179 131 3 0 chr13 33148196 33148501 -68724668 + AluSp SINE Alu 1 306 -7 5764 221 57 37 chr13 33148501 33148744 -68724425 + L1M4 LINE L1 2135 2372 -4453 273 270 45 27 chr13 33148775 33148886 -68724283 + L1M4c LINE L1 1643 1755 -4629 1308 323 41 28 chr13 33149029 33149643 -68723526 + L1MB7 LINE L1 9 630 -6159 3222 195 61 26 chr13 33149807 33150075 -68723094 + L1MB7 LINE L1 1356 1613 -5176 369 0 0 0 chr13 33150075 33150116 -68723053 + (CA)n Simple_repeat Simple_repeat 2 42 0 3222 195 61 26 chr13 33150116 33150715 -68722454 + L1MB7 LINE L1 1613 2253 -4536 6397 226 28 14 chr13 33150719 33153112 -68720057 + L1MB7 LINE L1 4096 6597 -229 3047 206 72 9 chr13 33153112 33153853 -68719316 - LTR48 LTR ERV1 0 787 1 6397 226 28 14 chr13 33153853 33154067 -68719102 + L1MB7 LINE L1 6597 6807 -19 647 254 127 51 chr13 33154292 33154843 -68718326 - L1ME4a LINE L1 -6 6115 5523 25 0 0 0 chr13 33154938 33154963 -68718206 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 33155323 33155345 -68717824 + AT_rich Low_complexity Low_complexity 1 22 0 261 256 143 37 chr13 33155441 33155762 -68717407 - L1ME4a LINE L1 -1251 4895 4541 228 306 0 25 chr13 33156369 33156384 -68716785 - L1MA10 LINE L1 -2 6332 6318 956 200 19 5 chr13 33156384 33156594 -68716575 - L1ME1 LINE L1 -5 6161 5949 533 270 142 33 chr13 33158555 33158766 -68714403 - MIR SINE MIR -14 248 15 203 245 20 0 chr13 33159464 33159513 -68713656 + C-rich Low_complexity Low_complexity 1 50 0 2424 84 0 0 chr13 33160797 33161108 -68712061 - AluY SINE Alu 0 311 1 203 348 160 14 chr13 33161110 33161258 -68711911 + MIR SINE MIR 45 212 -50 672 311 50 9 chr13 33161589 33161811 -68711358 + MIR SINE MIR 6 236 -26 366 261 69 0 chr13 33162092 33162222 -68710947 + MIR SINE MIR 40 178 -84 295 141 31 0 chr13 33164126 33164190 -68708979 + CT-rich Low_complexity Low_complexity 2 67 0 4796 87 5 0 chr13 33166377 33167024 -68706145 + L1PA10 LINE L1 5519 6168 0 408 295 43 68 chr13 33167959 33168193 -68704976 + MIR SINE MIR 23 250 -12 186 208 0 0 chr13 33169350 33169398 -68703771 + (CA)n Simple_repeat Simple_repeat 1 48 0 1208 223 42 71 chr13 33170027 33170507 -68702662 - LTR37B LTR ERV1 -2 466 1 2618 127 19 0 chr13 33170651 33171076 -68702093 + L1MB2 LINE L1 5730 6162 -9 810 108 24 24 chr13 33171820 33171986 -68701183 + CT-rich Low_complexity Low_complexity 3 168 0 192 125 0 0 chr13 33173932 33173964 -68699205 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1173 233 99 17 chr13 33174174 33174586 -68698583 + L2 LINE L2 1352 1797 -1517 651 112 0 9 chr13 33174587 33174703 -68698466 - Charlie5 DNA MER1_type -27 2585 2471 577 209 68 14 chr13 33174752 33174900 -68698269 + L2 LINE L2 1806 1961 -1353 1960 169 40 31 chr13 33174903 33175443 -68697726 - MLT2A2 LTR ERVL 0 554 3 1451 255 107 27 chr13 33175443 33176003 -68697166 + L2 LINE L2 1961 2565 -749 1607 186 20 14 chr13 33176802 33177098 -68696071 + AluJo SINE Alu 1 298 -14 41704 42 3 1 chr13 33177181 33183306 -68689863 + L1PA4 LINE L1 13 6152 -3 324 308 105 15 chr13 33183384 33183517 -68689652 + L1ME4a LINE L1 5779 5923 -198 261 299 6 45 chr13 33184269 33184446 -68688723 + L1ME LINE L1 5717 5886 -235 274 243 23 0 chr13 33184512 33184593 -68688576 - L1M1 LINE L1 -578 5543 5462 2300 158 70 0 chr13 33184634 33185032 -68688137 + MSTB LTR MaLR 1 426 0 2053 146 24 11 chr13 33185032 33185408 -68687761 + MSTB-int LTR MaLR 1 381 -1270 236 154 0 123 chr13 33185660 33185725 -68687444 - LTR40b LTR ERVL -414 48 1 844 345 92 37 chr13 33185726 33186589 -68686580 + L2 LINE L2 800 1709 -1605 441 324 45 47 chr13 33186609 33187156 -68686013 + L2 LINE L2 2624 3213 -100 273 197 0 0 chr13 33187224 33187290 -68685879 + (TGAA)n Simple_repeat Simple_repeat 4 69 0 368 313 129 11 chr13 33188004 33188202 -68684967 - MIR SINE MIR 0 262 44 186 356 14 0 chr13 33188590 33188663 -68684506 + L2 LINE L2 3194 3267 -5 1777 247 51 39 chr13 33188757 33189162 -68684007 + L1MCc LINE L1 860 1258 -5651 2150 117 0 27 chr13 33189162 33189462 -68683707 + AluSx SINE Alu 8 299 -13 1777 247 51 39 chr13 33189462 33190196 -68682973 + L1MCc LINE L1 1258 2012 -4897 3884 157 41 7 chr13 33190205 33190931 -68682238 + L1MC3 LINE L1 7027 7777 -8 1358 273 63 10 chr13 33190951 33191555 -68681614 + L1MCc LINE L1 2202 2837 -4285 * 2880 192 7 68 chr13 33191554 33192263 -68680906 + L1MA10 LINE L1 5667 6332 -2 1496 225 26 17 chr13 33192275 33192653 -68680516 + L1ME1 LINE L1 5718 6018 -148 3377 101 36 0 chr13 33192653 33193157 -68680012 + L1MA2 LINE L1 5782 6303 -1 1496 225 26 17 chr13 33193157 33193217 -68679952 + L1ME1 LINE L1 6018 6076 -90 204 281 0 18 chr13 33194581 33194638 -68678531 + GA-rich Low_complexity Low_complexity 6 61 0 21 57 0 0 chr13 33194786 33194821 -68678348 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr13 33195469 33195501 -68677668 + AT_rich Low_complexity Low_complexity 1 32 0 227 171 40 40 chr13 33196363 33196439 -68676730 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 * 271 205 60 13 chr13 33196432 33196583 -68676586 + (TA)n Simple_repeat Simple_repeat 2 159 0 1860 220 41 62 chr13 33196583 33197214 -68675955 - L1MC5 LINE L1 -730 7231 6614 474 260 55 17 chr13 33197347 33197528 -68675641 - L1MC5 LINE L1 -2320 5488 5301 800 269 138 38 chr13 33197596 33198275 -68674894 - L1MC5 LINE L1 -913 5233 4487 336 286 66 54 chr13 33198335 33198576 -68674593 - HAL1b LINE L1 -774 574 331 25 0 0 0 chr13 33198901 33198926 -68674243 + AT_rich Low_complexity Low_complexity 1 25 0 256 264 9 123 chr13 33200311 33200417 -68672752 + MIR SINE MIR 168 261 -1 1893 135 0 64 chr13 33200913 33201240 -68671929 + AluSx SINE Alu 1 306 -6 243 304 61 43 chr13 33202016 33202131 -68671038 + L3 LINE CR1 1385 1501 -76 438 137 42 11 chr13 33202158 33202253 -68670916 - L1MC2 LINE L1 0 6344 6247 426 98 0 0 chr13 33202255 33202316 -68670853 - MSTD LTR MaLR 0 457 397 1224 226 78 0 chr13 33202316 33202573 -68670596 - MSTD LTR MaLR -119 277 1 2939 208 6 20 chr13 33202573 33203209 -68669960 - L1MC3 LINE L1 -89 7696 7070 2373 98 35 19 chr13 33204025 33204393 -68668776 + L1PA11 LINE L1 5800 6173 -1 270 0 0 0 chr13 33204664 33204694 -68668475 + (TG)n Simple_repeat Simple_repeat 2 31 0 307 299 104 0 chr13 33204839 33204986 -68668183 - MIR3 SINE MIR -60 148 2 189 0 0 0 chr13 33205111 33205132 -68668037 + (CA)n Simple_repeat Simple_repeat 1 21 0 2200 82 14 0 chr13 33205189 33205492 -68667677 + AluSq SINE Alu 1 307 0 30 27 0 0 chr13 33205565 33205602 -68667567 + AT_rich Low_complexity Low_complexity 1 37 0 512 293 68 20 chr13 33206497 33206746 -68666423 - MIR SINE MIR 0 262 2 7556 25 2 9 chr13 33206930 33208339 -68664830 - L1PA4 LINE L1 0 6155 4766 10525 21 2 6 chr13 33208339 33209584 -68663585 + L1PA4 LINE L1 3524 4762 -1384 27 29 0 0 chr13 33209772 33209806 -68663363 + AT_rich Low_complexity Low_complexity 1 34 0 395 273 142 23 chr13 33209855 33210031 -68663138 - MIR SINE MIR 0 262 66 314 288 12 0 chr13 33210138 33210218 -68662951 + MLT1I LTR MaLR 68 148 -261 350 282 63 28 chr13 33210256 33210398 -68662771 + MLT1J2 LTR MaLR 263 409 -41 210 290 167 56 chr13 33211028 33211352 -68661817 - L2 LINE L2 -565 2749 2390 247 246 8 29 chr13 33214469 33214597 -68658572 + MER5B DNA MER1_type 1 178 0 25 0 0 0 chr13 33214776 33214801 -68658368 + AT_rich Low_complexity Low_complexity 1 25 0 272 256 103 26 chr13 33214801 33214996 -68658173 - L1ME4a LINE L1 -14 6107 5898 578 347 50 0 chr13 33217211 33217453 -68655716 + MIR SINE MIR 1 254 -8 423 247 173 44 chr13 33217505 33217652 -68655517 + L1ME4a LINE L1 5554 5681 -440 4058 157 14 4 chr13 33217652 33218367 -68654802 - L1MD1 LINE L1 -1 6241 5520 423 247 173 44 chr13 33218367 33218583 -68654586 + L1ME4a LINE L1 5681 5964 -157 490 294 77 49 chr13 33218804 33219633 -68653536 - L1ME4a LINE L1 -752 5394 4955 253 226 48 0 chr13 33219862 33219924 -68653245 + L1ME4a LINE L1 5855 5919 -202 31 26 0 0 chr13 33220180 33220218 -68652951 + AT_rich Low_complexity Low_complexity 1 38 0 804 299 30 15 chr13 33220218 33220482 -68652687 - L3 LINE CR1 -17 1560 1293 180 0 0 0 chr13 33220488 33220508 -68652661 + (T)n Simple_repeat Simple_repeat 1 20 0 763 323 18 4 chr13 33220608 33220837 -68652332 - MIR SINE MIR -23 239 8 1323 239 122 19 chr13 33220847 33221215 -68651954 - MLT1H LTR MaLR -141 408 3 225 108 0 0 chr13 33225372 33225409 -68647760 + (TG)n Simple_repeat Simple_repeat 2 38 0 422 320 155 0 chr13 33225698 33225904 -68647265 - MIR SINE MIR -6 256 19 523 261 13 32 chr13 33225913 33226070 -68647099 - MER5A DNA MER1_type 0 189 36 602 238 121 29 chr13 33226624 33226830 -68646339 - MIR SINE MIR -12 250 26 246 305 0 49 chr13 33227943 33228025 -68645144 + MIR SINE MIR 61 138 -124 485 284 56 0 chr13 33228503 33228665 -68644504 - LTR67 LTR ERVL -7 550 380 2318 159 17 26 chr13 33228935 33229364 -68643805 + MSTB LTR MaLR 1 374 -1 1905 171 7 3 chr13 33230175 33230485 -68642684 - AluJo SINE Alu -1 311 1 425 235 35 0 chr13 33230500 33230585 -68642584 - L2 LINE L2 -38 3234 3147 2764 162 17 53 chr13 33231579 33232159 -68641010 - MER89 LTR ERV1 0 559 1 319 309 58 29 chr13 33232826 33232965 -68640204 - MIR SINE MIR -34 228 86 483 238 46 33 chr13 33232969 33233177 -68639992 + LTR1 LTR ERV1 70 425 -565 457 176 28 142 chr13 33233242 33233418 -68639751 + LTR28 LTR ERV1 865 1020 0 3504 178 21 36 chr13 33233418 33234147 -68639022 + L1MA10 LINE L1 5579 6296 -38 717 118 45 0 chr13 33234151 33234261 -68638908 - AluJo SINE Alu -177 135 21 24 0 0 0 chr13 33234950 33234974 -68638195 + AT_rich Low_complexity Low_complexity 1 24 0 417 302 21 30 chr13 33235664 33235905 -68637264 + L2 LINE L2 2756 2992 -321 569 290 159 12 chr13 33236220 33236472 -68636697 + L2 LINE L2 3024 3312 -1 34 24 0 0 chr13 33236510 33236551 -68636618 + AT_rich Low_complexity Low_complexity 1 41 0 234 0 0 0 chr13 33236670 33236696 -68636473 + (TA)n Simple_repeat Simple_repeat 2 27 0 1563 121 12 0 chr13 33237108 33237357 -68635812 - L1MA5A LINE L1 -6 6291 6040 192 343 48 19 chr13 33237466 33237571 -68635598 + MIR SINE MIR 30 137 -71 22 0 0 0 chr13 33238081 33238103 -68635066 + AT_rich Low_complexity Low_complexity 1 22 0 492 195 47 8 chr13 33238264 33238392 -68634777 + L1MB7 LINE L1 6052 6184 0 1300 201 42 50 chr13 33239140 33239423 -68633746 + AluJo SINE Alu 4 284 -18 327 49 0 0 chr13 33239423 33239464 -68633705 + (CA)n Simple_repeat Simple_repeat 2 42 0 1860 168 3 0 chr13 33240600 33240892 -68632277 - AluJb SINE Alu -19 293 1 562 284 119 49 chr13 33241443 33241915 -68631254 + MLT1K LTR MaLR 77 581 -7 2077 152 3 3 chr13 33241931 33242234 -68630935 - AluSx SINE Alu -9 303 1 381 287 0 19 chr13 33242566 33242674 -68630495 + MLT2E LTR ERVL 30 135 -493 297 0 0 0 chr13 33242914 33242947 -68630222 + (CAGC)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr13 33243278 33243307 -68629862 + AT_rich Low_complexity Low_complexity 1 29 0 730 142 0 0 chr13 33248540 33248646 -68624523 + FRAM SINE Alu 41 146 -30 207 0 0 0 chr13 33248650 33248673 -68624496 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 310 256 70 35 chr13 33248921 33249007 -68624162 + MIR SINE MIR 40 128 -134 428 334 13 5 chr13 33249657 33249842 -68623327 + MIR3 SINE MIR 15 200 -8 368 278 35 77 chr13 33250042 33250211 -68622958 + MLT1J LTR MaLR 258 419 -92 581 293 47 16 chr13 33251861 33252052 -68621117 - MIR SINE MIR -38 224 28 2986 167 14 61 chr13 33252070 33252712 -68620457 + LTR9 LTR ERV1 1 612 0 298 273 203 16 chr13 33253906 33254034 -68619135 + MIR SINE MIR 110 261 -1 1742 173 9 35 chr13 33254341 33254687 -68618482 - MER1B DNA MER1_type 0 337 1 211 237 105 26 chr13 33254825 33254901 -68618268 + MIR SINE MIR 181 262 0 231 339 150 0 chr13 33254902 33255029 -68618140 + L3b LINE CR1 1168 1313 -270 502 152 50 0 chr13 33255737 33255836 -68617333 - MER5A DNA MER1_type -77 112 9 192 163 116 0 chr13 33257779 33257822 -68615347 + MIR3 SINE MIR 119 166 -42 * 692 211 60 18 chr13 33257816 33257982 -68615187 - MER5B DNA MER1_type -5 173 1 214 271 17 0 chr13 33257982 33258037 -68615132 + MIR3 SINE MIR 153 208 0 262 229 0 0 chr13 33258558 33258619 -68614550 + T-rich Low_complexity Low_complexity 1 61 0 7295 30 1 1 chr13 33258620 33259522 -68613647 - L1PA3 LINE L1 0 6155 5254 475 29 43 0 chr13 33259533 33259603 -68613566 + L1P LINE L1 3745 3817 -2329 312 206 137 0 chr13 33260085 33260158 -68613011 + MIR SINE MIR 71 153 -109 6204 124 40 22 chr13 33260159 33260352 -68612817 + Tigger1 DNA MER2_type 1 189 -2229 2199 103 7 0 chr13 33260352 33260644 -68612525 - AluSx SINE Alu -18 294 1 6204 124 40 22 chr13 33260644 33260669 -68612500 + Tigger1 DNA MER2_type 189 212 -2206 2232 143 6 3 chr13 33260669 33261011 -68612158 + MER61A LTR ERV1 1 343 0 6204 124 40 22 chr13 33261011 33261871 -68611298 + Tigger1 DNA MER2_type 212 1099 -1319 2046 144 6 54 chr13 33262087 33262441 -68610728 + MER1B DNA MER1_type 1 337 0 1686 187 25 30 chr13 33263007 33263403 -68609766 + MSTD LTR MaLR 3 396 0 353 330 0 0 chr13 33263525 33263625 -68609544 + MIR SINE MIR 157 256 -6 396 289 56 41 chr13 33263758 33263955 -68609214 - MIR3 SINE MIR -1 207 8 309 283 71 0 chr13 33264376 33264475 -68608694 + MIR SINE MIR 65 170 -92 180 111 0 0 chr13 33264525 33264552 -68608617 + (TTG)n Simple_repeat Simple_repeat 3 29 0 372 261 292 5 chr13 33264789 33264984 -68608185 - MIR SINE MIR 0 262 12 327 49 0 0 chr13 33265428 33265469 -68607700 + (TA)n Simple_repeat Simple_repeat 2 42 0 326 298 101 38 chr13 33265694 33265852 -68607317 + MIR3 SINE MIR 30 197 -11 216 255 0 0 chr13 33266080 33266131 -68607038 + CT-rich Low_complexity Low_complexity 3 53 0 28 0 0 0 chr13 33266165 33266193 -68606976 + AT_rich Low_complexity Low_complexity 1 28 0 1597 199 34 0 chr13 33267635 33267931 -68605238 - AluJo SINE Alu -1 311 6 223 294 98 29 chr13 33268127 33268229 -68604940 - MIR SINE MIR -44 218 110 273 119 0 0 chr13 33268366 33268408 -68604761 + (A)n Simple_repeat Simple_repeat 1 42 0 2163 119 7 10 chr13 33268762 33269065 -68604104 + AluSq SINE Alu 1 302 -11 2188 128 0 0 chr13 33269828 33270124 -68603045 + AluSx SINE Alu 1 296 -16 438 294 25 103 chr13 33270679 33271039 -68602130 + L2 LINE L2 2941 3272 0 1546 164 4 4 chr13 33271301 33271551 -68601618 + AluSx SINE Alu 1 250 -62 25 0 0 0 chr13 33271672 33271697 -68601472 + AT_rich Low_complexity Low_complexity 1 25 0 332 279 125 0 chr13 33271715 33271819 -68601350 + L2 LINE L2 3156 3272 0 316 330 213 20 chr13 33272030 33272630 -68600539 - L3 LINE CR1 -102 1475 760 770 176 0 0 chr13 33273485 33273610 -68599559 - FLAM_C SINE Alu -8 125 1 302 278 104 26 chr13 33273999 33274114 -68599055 - L3 LINE CR1 -68 1509 1386 277 0 0 0 chr13 33275282 33275314 -68597855 + L1PA10 LINE L1 6025 6056 -112 2183 101 0 16 chr13 33275511 33275818 -68597351 + AluSx SINE Alu 1 302 -10 2231 95 7 7 chr13 33275821 33276117 -68597052 + AluSg SINE Alu 1 296 -14 2258 89 20 3 chr13 33276118 33276411 -68596758 + AluSq SINE Alu 2 299 -14 2319 78 0 7 chr13 33276523 33276818 -68596351 - AluY SINE Alu -18 293 1 1531 171 100 7 chr13 33276996 33277276 -68595893 + AluJo SINE Alu 1 306 -6 5001 161 109 40 chr13 33277308 33277366 -68595803 - Charlie1a DNA MER1_type -1310 1451 1398 1627 163 27 44 chr13 33277366 33277661 -68595508 + AluJb SINE Alu 21 310 -2 5001 161 109 40 chr13 33277661 33277938 -68595231 - Charlie1a DNA MER1_type -1363 1398 1141 1447 155 33 100 chr13 33277938 33278067 -68595102 + AluJo SINE Alu 1 137 -175 2444 89 0 0 chr13 33278067 33278371 -68594798 + AluSx SINE Alu 1 304 -8 1447 155 33 100 chr13 33278371 33278570 -68594599 + AluJo SINE Alu 137 307 -5 5001 161 109 40 chr13 33278570 33278653 -68594516 - Charlie1a DNA MER1_type -1620 1141 1065 1852 160 0 16 chr13 33278653 33278966 -68594203 - AluJb SINE Alu -4 308 1 5001 161 109 40 chr13 33278966 33279903 -68593266 - Charlie1a DNA MER1_type -1696 1065 1 2240 94 0 50 chr13 33282131 33282450 -68590719 - AluY SINE Alu -8 303 1 639 199 0 57 chr13 33282800 33282941 -68590228 + FLAM_C SINE Alu 1 133 0 363 192 0 0 chr13 33282957 33283030 -68590139 + (TA)n Simple_repeat Simple_repeat 2 74 0 23 0 0 0 chr13 33283684 33283707 -68589462 + AT_rich Low_complexity Low_complexity 1 23 0 513 0 0 0 chr13 33283707 33283764 -68589405 + (TA)n Simple_repeat Simple_repeat 2 58 0 427 189 90 8 chr13 33284822 33284944 -68588225 + MER94 DNA DNA 1 132 -2 22 35 0 0 chr13 33285463 33285492 -68587677 + AT_rich Low_complexity Low_complexity 1 29 0 2247 102 0 0 chr13 33287405 33287690 -68585479 - AluSp SINE Alu -28 285 1 804 67 0 0 chr13 33287745 33287849 -68585320 - AluY SINE Alu 0 311 208 2181 133 0 0 chr13 33288368 33288669 -68584500 + AluSx SINE Alu 1 301 -11 323 130 37 0 chr13 33289323 33289377 -68583792 + AluS SINE Alu 225 280 -21 524 209 0 0 chr13 33289377 33289506 -68583663 + L1MA4 LINE L1 6164 6292 -8 192 40 0 0 chr13 33289548 33289573 -68583596 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2116 93 0 7 chr13 33289573 33289852 -68583317 - AluSc SINE Alu -32 277 1 25 0 0 0 chr13 33289897 33289922 -68583247 + AT_rich Low_complexity Low_complexity 1 25 0 1627 131 10 86 chr13 33289936 33290226 -68582943 - AluJo SINE Alu -44 268 1 2160 128 0 3 chr13 33290415 33290712 -68582457 - AluSx SINE Alu -16 296 1 565 125 104 0 chr13 33291265 33291361 -68581808 + FLAM_C SINE Alu 6 111 -32 1982 123 20 13 chr13 33291466 33291768 -68581401 + AluSx SINE Alu 1 304 -8 1736 174 7 3 chr13 33292271 33292559 -68580610 - AluJo SINE Alu -17 295 7 2056 125 10 0 chr13 33292885 33293180 -68579989 + AluSq SINE Alu 1 298 -15 431 324 115 42 chr13 33294712 33294881 -68578288 + L2 LINE L2 2210 2365 -949 2113 118 14 0 chr13 33294881 33295178 -68577991 - AluSx SINE Alu -11 301 1 431 324 115 42 chr13 33295178 33295418 -68577751 + L2 LINE L2 2365 2649 -665 207 374 0 24 chr13 33297040 33297123 -68576046 - L2 LINE L2 -7 3265 3185 2434 179 50 44 chr13 33298734 33299254 -68573915 - MER44D DNA MER2_type -1 604 27 22 0 0 0 chr13 33299439 33299461 -68573708 + AT_rich Low_complexity Low_complexity 1 22 0 2089 104 6 22 chr13 33299464 33299600 -68573569 + AluSx SINE Alu 1 138 -174 2324 78 0 53 chr13 33299600 33299920 -68573249 + AluY SINE Alu 1 303 -8 2089 104 6 22 chr13 33299920 33300100 -68573069 + AluSx SINE Alu 138 312 0 2188 107 10 0 chr13 33301587 33301887 -68571282 + AluSg SINE Alu 1 303 -7 2178 107 3 0 chr13 33303062 33303360 -68569809 - AluSq SINE Alu -14 299 1 298 278 0 0 chr13 33303705 33303795 -68569374 + L1MC4 LINE L1 6614 6703 -1339 201 182 0 0 chr13 33303795 33303828 -68569341 + (TA)n Simple_repeat Simple_repeat 1 33 0 2063 137 0 0 chr13 33303828 33304120 -68569049 - AluSx SINE Alu -20 292 1 580 301 118 18 chr13 33304761 33304990 -68568179 + MIR SINE MIR 11 262 0 180 0 0 0 chr13 33305514 33305534 -68567635 + (CA)n Simple_repeat Simple_repeat 2 21 0 2018 85 14 11 chr13 33305938 33306220 -68566949 - AluSg SINE Alu -27 283 1 270 302 274 16 chr13 33306343 33306598 -68566571 - L3 LINE CR1 -155 1422 1102 1485 173 40 10 chr13 33306956 33307256 -68565913 + AluJo SINE Alu 1 309 -3 1904 87 112 0 chr13 33307595 33307871 -68565298 - AluSx SINE Alu -5 307 1 2028 129 0 10 chr13 33308234 33308537 -68564632 - AluSx SINE Alu -10 302 3 23 33 0 0 chr13 33308998 33309028 -68564141 + AT_rich Low_complexity Low_complexity 1 30 0 2001 121 17 0 chr13 33310561 33310851 -68562318 + AluSg SINE Alu 3 297 -13 1936 110 7 17 chr13 33311268 33311559 -68561610 + AluSg SINE Alu 1 288 -22 1196 263 33 82 chr13 33311606 33312092 -68561077 + L2 LINE L2 2804 3265 -48 24 0 0 0 chr13 33313421 33313445 -68559724 + AT_rich Low_complexity Low_complexity 1 24 0 2007 120 7 0 chr13 33314772 33315071 -68558098 - AluSx SINE Alu -11 301 1 237 267 0 0 chr13 33315081 33315126 -68558043 + C-rich Low_complexity Low_complexity 5 49 0 1985 101 0 0 chr13 33315129 33315386 -68557783 - AluSg SINE Alu -53 257 1 1491 116 148 12 chr13 33315680 33315930 -68557239 - AluSx SINE Alu -28 284 1 688 157 26 0 chr13 33315955 33316070 -68557099 + FLAM_C SINE Alu 1 118 -25 25 51 0 0 chr13 33316070 33316109 -68557060 + AT_rich Low_complexity Low_complexity 1 39 0 2143 108 0 3 chr13 33316109 33316404 -68556765 - AluSq SINE Alu -19 294 1 2211 71 44 3 chr13 33316408 33316703 -68556466 - AluY SINE Alu -4 307 1 45 34 0 0 chr13 33316709 33316768 -68556401 + AT_rich Low_complexity Low_complexity 1 59 0 21 95 0 0 chr13 33318343 33318406 -68554763 + AT_rich Low_complexity Low_complexity 1 63 0 21 57 0 0 chr13 33318463 33318498 -68554671 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 33319089 33319120 -68554049 + AT_rich Low_complexity Low_complexity 1 31 0 1475 179 14 21 chr13 33319277 33319557 -68553612 - AluJo SINE Alu -34 278 1 925 92 8 15 chr13 33319564 33319694 -68553475 - AluSq/x SINE Alu -180 133 5 333 226 65 65 chr13 33319884 33319977 -68553192 - L2 LINE L2 -6 3307 3215 9845 126 81 13 chr13 33319981 33320176 -68552993 + Tigger2 DNA MER2_type 944 1124 -1594 2457 70 0 0 chr13 33320176 33320477 -68552692 - AluY SINE Alu -10 301 1 9845 126 81 13 chr13 33320477 33321942 -68551227 + Tigger2 DNA MER2_type 1124 2718 0 4507 183 75 20 chr13 33321944 33322906 -68550263 - L1MB3 LINE L1 0 6183 5275 1840 118 54 4 chr13 33322906 33323185 -68549984 - AluSg SINE Alu -17 293 1 4507 183 75 20 chr13 33323185 33324127 -68549042 - L1MB3 LINE L1 -908 5275 4190 647 257 231 21 chr13 33324179 33324517 -68548652 + L2 LINE L2 1284 1692 -1622 22 0 0 0 chr13 33324677 33324699 -68548470 + AT_rich Low_complexity Low_complexity 1 22 0 1850 155 0 20 chr13 33325366 33325669 -68547500 - AluJb SINE Alu -14 298 2 1473 129 40 114 chr13 33326563 33326705 -68546464 + AluJo SINE Alu 1 107 -205 1546 77 0 61 chr13 33326705 33326778 -68546391 - L1PA13 LINE L1 -5 6158 6082 2153 118 0 6 chr13 33326778 33327091 -68546078 - AluSx SINE Alu -1 311 1 1546 77 0 61 chr13 33327091 33327264 -68545905 - L1PA13 LINE L1 -81 6082 5927 1473 129 40 114 chr13 33327264 33327446 -68545723 + AluJo SINE Alu 107 301 -11 545 272 97 106 chr13 33328600 33328920 -68544249 + L3 LINE CR1 907 1223 -354 4552 158 60 10 chr13 33328971 33329794 -68543375 + MER6 DNA MER2_type 2 865 0 23 54 0 0 chr13 33329915 33329952 -68543217 + AT_rich Low_complexity Low_complexity 1 37 0 2144 128 0 0 chr13 33330154 33330451 -68542718 - AluSx SINE Alu -15 297 1 1999 119 11 3 chr13 33330467 33330753 -68542416 - AluSq SINE Alu -25 288 1 1327 117 0 0 chr13 33330922 33331101 -68542068 - AluSg/x SINE Alu -6 304 126 450 0 0 0 chr13 33331101 33331151 -68542018 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2042 121 0 0 chr13 33331151 33331433 -68541736 - AluSg SINE Alu -28 282 1 2183 96 0 32 chr13 33333380 33333694 -68539475 + AluSp SINE Alu 1 304 -9 659 104 58 0 chr13 33333727 33334074 -68539095 + (TA)n Simple_repeat Simple_repeat 1 367 0 1394 83 0 0 chr13 33334089 33334270 -68538899 - AluY SINE Alu 0 311 131 187 286 18 0 chr13 33335701 33335757 -68537412 + MER5A DNA MER1_type 50 106 -83 504 228 0 0 chr13 33335794 33335886 -68537283 + L2 LINE L2 3221 3312 -1 2487 30 3 3 chr13 33335958 33336255 -68536914 - AluY SINE Alu -14 297 1 966 161 0 25 chr13 33336941 33337102 -68536067 - FRAM SINE Alu -20 156 1 257 281 76 41 chr13 33338029 33338269 -68534900 - L1ME LINE L1 -364 5798 5533 22 0 0 0 chr13 33338745 33338767 -68534402 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr13 33339253 33339280 -68533889 + (A)n Simple_repeat Simple_repeat 1 27 0 192 77 0 0 chr13 33340285 33340311 -68532858 + (CTG)n Simple_repeat Simple_repeat 2 27 0 28 29 0 0 chr13 33340412 33340447 -68532722 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 33341293 33341322 -68531847 + AT_rich Low_complexity Low_complexity 1 29 0 26 74 0 0 chr13 33341807 33341861 -68531308 + AT_rich Low_complexity Low_complexity 1 54 0 1294 109 0 0 chr13 33344736 33344910 -68528259 - AluSq SINE Alu -6 307 134 32 75 0 0 chr13 33345804 33345871 -68527298 + AT_rich Low_complexity Low_complexity 1 67 0 32 75 0 0 chr13 33346626 33346693 -68526476 + AT_rich Low_complexity Low_complexity 1 67 0 23 86 0 0 chr13 33347288 33347346 -68525823 + AT_rich Low_complexity Low_complexity 1 58 0 214 246 0 0 chr13 33347492 33347553 -68525616 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 611 254 57 24 chr13 33351931 33352140 -68521029 - MIR SINE MIR -43 219 4 654 234 86 54 chr13 33352448 33352670 -68520499 - MIR SINE MIR -2 260 32 2500 45 0 0 chr13 33352716 33353004 -68520165 - AluSc SINE Alu -14 295 8 695 225 177 10 chr13 33353237 33353446 -68519723 + MIR SINE MIR 18 261 -1 2093 85 60 0 chr13 33353529 33353811 -68519358 - AluSg SINE Alu -10 300 2 393 261 52 0 chr13 33354282 33354397 -68518772 - MIR SINE MIR -10 252 132 2544 52 0 3 chr13 33355153 33355459 -68517710 + AluY SINE Alu 1 305 -6 715 195 16 0 chr13 33355896 33356024 -68517145 - FLAM_A SINE Alu -3 130 1 1651 177 97 89 chr13 33356178 33356674 -68516495 + MLT1D LTR MaLR 4 503 -2 198 0 0 0 chr13 33356731 33356753 -68516416 + (TG)n Simple_repeat Simple_repeat 2 23 0 1224 162 18 9 chr13 33356780 33357009 -68516160 - AluJb SINE Alu 0 312 82 1815 128 64 0 chr13 33357802 33358083 -68515086 - AluSx SINE Alu -13 299 1 407 329 57 73 chr13 33358309 33358625 -68514544 - L3 LINE CR1 -213 1364 1054 1815 141 0 53 chr13 33359813 33360117 -68513052 - AluSx SINE Alu -24 288 1 639 310 113 68 chr13 33361081 33361206 -68511963 - L2 LINE L2 -809 2505 2387 189 0 0 0 chr13 33361206 33361227 -68511942 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 474 75 0 0 chr13 33361226 33361293 -68511876 + (TG)n Simple_repeat Simple_repeat 1 67 0 639 310 113 68 chr13 33361227 33361829 -68511340 - L2 LINE L2 -927 2387 1814 2363 104 3 0 chr13 33362041 33362350 -68510819 + AluSp SINE Alu 1 310 -3 225 220 68 0 chr13 33363649 33363708 -68509461 - L1ME LINE L1 -328 5793 5731 2201 103 7 0 chr13 33363750 33364040 -68509129 - AluSq SINE Alu -19 294 3 1134 74 0 0 chr13 33364041 33364176 -68508993 - AluSq/x SINE Alu -176 136 2 571 164 60 0 chr13 33364615 33364731 -68508438 - L1MB3 LINE L1 -7 6176 6054 2247 95 3 0 chr13 33365001 33365286 -68507883 - AluSx SINE Alu -26 286 1 2277 75 7 3 chr13 33365620 33365914 -68507255 - AluSc SINE Alu -14 295 1 255 281 16 0 chr13 33366133 33366197 -68506972 + CT-rich Low_complexity Low_complexity 3 67 0 241 304 183 9 chr13 33367321 33367436 -68505733 - MIR SINE MIR -120 142 8 1010 247 179 17 chr13 33367754 33368660 -68504509 + L1MEc LINE L1 626 1691 -4705 992 204 120 4 chr13 33368666 33368941 -68504228 + L1MEc LINE L1 2017 2323 -4073 2105 126 3 16 chr13 33369558 33369868 -68503301 + AluJb SINE Alu 3 308 -4 5306 220 56 80 chr13 33369894 33369941 -68503228 + L1MEc LINE L1 2272 2319 -3896 1995 137 40 0 chr13 33369941 33370241 -68502928 + AluSx SINE Alu 1 312 0 5306 220 56 80 chr13 33370241 33370288 -68502881 + L1MEc LINE L1 2319 2366 -3849 1918 125 25 75 chr13 33370288 33370609 -68502560 + AluJb SINE Alu 3 307 -5 5306 220 56 80 chr13 33370609 33370972 -68502197 + L1MEc LINE L1 2366 2736 -3479 825 129 204 30 chr13 33370972 33371173 -68501996 + MER46A DNA MER2_type 1 236 0 5306 220 56 80 chr13 33371173 33371239 -68501930 + L1MEc LINE L1 2736 2802 -3413 814 215 126 0 chr13 33371239 33371430 -68501739 + MER58C DNA MER1_type 1 215 0 5306 220 56 80 chr13 33371430 33372144 -68501025 + L1MEc LINE L1 2802 3531 -2684 1974 141 36 10 chr13 33372144 33372448 -68500721 + AluJb SINE Alu 1 312 0 5306 220 56 80 chr13 33372448 33373252 -68499917 + L1MEc LINE L1 3531 4269 -1946 524 221 18 55 chr13 33373259 33373422 -68499747 - L1ME1 LINE L1 -124 6042 5886 1582 141 102 18 chr13 33373513 33373796 -68499373 - AluJo SINE Alu -3 309 3 185 238 0 0 chr13 33373804 33373846 -68499323 + L2 LINE L2 2216 2257 -1057 477 139 89 0 chr13 33374871 33374950 -68498219 + L2 LINE L2 3228 3313 0 2266 88 14 3 chr13 33375014 33375311 -68497858 + AluSq SINE Alu 1 300 -13 535 269 87 0 chr13 33376960 33377109 -68496060 + MLT1J2 LTR MaLR 3 164 -286 281 269 29 19 chr13 33377819 33377923 -68495246 + MIR3 SINE MIR 103 207 -1 2131 98 3 17 chr13 33377963 33378258 -68494911 - AluSc SINE Alu -18 291 1 2035 108 0 46 chr13 33378265 33378588 -68494581 - AluSp SINE Alu -5 308 1 916 201 12 0 chr13 33378801 33378970 -68494199 - AluJb SINE Alu -10 302 132 557 263 27 0 chr13 33379682 33379868 -68493301 + L1ME4a LINE L1 5716 5906 -215 273 172 62 16 chr13 33379890 33379954 -68493215 + L1ME4a LINE L1 5969 6035 -86 1787 171 0 13 chr13 33380418 33380723 -68492446 + AluJb SINE Alu 1 301 -11 366 333 29 0 chr13 33381217 33381322 -68491847 - MIR3 SINE MIR -16 192 85 228 174 286 41 chr13 33382009 33382107 -68491062 + L1ME4a LINE L1 5598 5719 -402 313 245 39 90 chr13 33382259 33382414 -68490755 + L1ME4a LINE L1 5968 6114 -7 2142 126 0 10 chr13 33382786 33383095 -68490074 - AluSx SINE Alu -6 306 1 419 257 57 0 chr13 33383222 33383327 -68489842 + MIR SINE MIR 151 261 -1 819 206 7 7 chr13 33383429 33383584 -68489585 + FRAM SINE Alu 1 155 -11 1114 268 342 12 chr13 33383893 33384811 -68488358 + L2 LINE L2 1259 2479 -835 809 274 131 8 chr13 33384811 33385056 -68488113 + LTR50 LTR ERVL 5 279 -516 554 275 80 13 chr13 33385113 33385362 -68487807 + LTR50 LTR ERVL 271 483 -40 862 252 215 27 chr13 33385362 33385892 -68487277 + L2 LINE L2 2679 3313 0 1227 267 143 19 chr13 33385943 33386591 -68486578 + HAL1b LINE L1 86 814 -534 653 249 188 12 chr13 33386596 33386818 -68486351 + HAL1b LINE L1 870 1052 -296 2365 62 3 32 chr13 33386818 33387127 -68486042 + AluY SINE Alu 1 300 -11 653 249 188 12 chr13 33387127 33387309 -68485860 + HAL1b LINE L1 1052 1345 -3 577 76 9 57 chr13 33387339 33387444 -68485725 + L1MB2 LINE L1 6070 6169 -2 26 50 0 0 chr13 33387444 33387484 -68485685 + AT_rich Low_complexity Low_complexity 1 40 0 354 269 65 0 chr13 33388109 33388217 -68484952 - L1ME LINE L1 -411 5710 5596 2311 88 0 10 chr13 33388246 33388553 -68484616 - AluSg SINE Alu -4 306 3 2665 16 7 3 chr13 33388792 33389097 -68484072 - AluY SINE Alu -5 306 1 23 0 0 0 chr13 33390359 33390382 -68482787 + AT_rich Low_complexity Low_complexity 1 23 0 1015 233 268 20 chr13 33390806 33390978 -68482191 + MLT1G LTR MaLR 1 129 -461 2085 109 0 4 chr13 33390978 33391253 -68481916 + AluSc SINE Alu 3 276 -33 1015 233 268 20 chr13 33391253 33391531 -68481638 + MLT1G LTR MaLR 129 563 -27 215 265 148 43 chr13 33392067 33392229 -68480940 + L2 LINE L2 2056 2234 -1080 257 287 21 35 chr13 33394202 33394345 -68478824 + C-rich Low_complexity Low_complexity 4 144 0 36 53 0 0 chr13 33395073 33395130 -68478039 + GC_rich Low_complexity Low_complexity 1 57 0 333 0 0 0 chr13 33400847 33400884 -68472285 + (TG)n Simple_repeat Simple_repeat 2 38 0 315 0 0 0 chr13 33401596 33401631 -68471538 + (CA)n Simple_repeat Simple_repeat 2 36 0 307 277 208 0 chr13 33404336 33404437 -68468732 - L2 LINE L2 -2 3270 3149 194 213 131 0 chr13 33404931 33404992 -68468177 - L2 LINE L2 -67 3205 3137 486 243 105 12 chr13 33405527 33405699 -68467470 - MIR SINE MIR -43 219 21 371 301 0 0 chr13 33406233 33406326 -68466843 - L2 LINE L2 -8 3264 3172 388 248 99 0 chr13 33406459 33406580 -68466589 - MIR SINE MIR -127 135 3 1599 146 59 4 chr13 33407093 33407347 -68465822 - AluJo SINE Alu -44 268 1 1240 162 4 51 chr13 33407731 33407966 -68465203 + AluJb SINE Alu 72 295 -17 22 0 0 0 chr13 33408585 33408607 -68464562 + AT_rich Low_complexity Low_complexity 1 22 0 459 248 69 7 chr13 33408609 33408754 -68464415 - L1ME4a LINE L1 -7 6114 5961 262 245 50 29 chr13 33408786 33408920 -68464249 - L1ME4a LINE L1 -226 5895 5758 206 95 24 0 chr13 33408920 33408962 -68464207 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 245 98 0 0 chr13 33408966 33409007 -68464162 - L1PA3 LINE L1 0 6155 6115 304 57 0 75 chr13 33409136 33409189 -68463980 - L1MA3 LINE L1 0 6305 6257 1973 130 7 10 chr13 33409201 33409493 -68463676 - AluJb SINE Alu -19 293 3 318 80 0 0 chr13 33410266 33410316 -68462853 + (CA)n Simple_repeat Simple_repeat 2 51 0 1689 148 21 28 chr13 33412151 33412286 -68460883 + AluJo SINE Alu 1 135 -177 2227 103 0 7 chr13 33412286 33412622 -68460547 + AluY SINE Alu 1 311 0 1689 148 21 28 chr13 33412622 33412770 -68460399 + AluJo SINE Alu 135 282 -30 207 0 0 0 chr13 33412774 33412797 -68460372 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2330 97 7 0 chr13 33413337 33413635 -68459534 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr13 33414159 33414179 -68458990 + (T)n Simple_repeat Simple_repeat 1 20 0 311 252 56 47 chr13 33414624 33414731 -68458438 + MIR SINE MIR 20 127 -81 340 208 159 76 chr13 33414987 33415197 -68457972 - L1ME4a LINE L1 -1 6120 5878 2204 135 0 0 chr13 33415197 33415509 -68457660 - AluSx SINE Alu 0 312 1 340 208 159 76 chr13 33415509 33415587 -68457582 - L1ME4a LINE L1 -243 5878 5808 28 86 0 0 chr13 33415587 33415657 -68457512 + AT_rich Low_complexity Low_complexity 1 70 0 218 276 19 29 chr13 33415779 33415884 -68457285 + (TATG)n Simple_repeat Simple_repeat 4 107 0 2181 113 7 10 chr13 33416047 33416348 -68456821 - AluSg SINE Alu -10 300 1 524 271 117 12 chr13 33416359 33416599 -68456570 - L1ME4a LINE L1 -346 5775 5511 200 152 0 152 chr13 33417700 33417766 -68455403 - L2 LINE L2 -1 3312 3257 333 212 25 8 chr13 33418490 33418608 -68454561 + CT-rich Low_complexity Low_complexity 2 121 0 1354 262 52 14 chr13 33419378 33419798 -68453371 + L3b LINE CR1 1121 1556 -27 1300 197 16 29 chr13 33420570 33420621 -68452548 - L1MB2 LINE L1 0 6171 6121 1911 147 0 19 chr13 33420621 33420928 -68452241 - AluJo SINE Alu -11 301 1 1300 197 16 29 chr13 33420928 33421191 -68451978 - L1MB2 LINE L1 -50 6121 5861 2293 151 7 6 chr13 33421193 33421655 -68451514 - L1MB2 LINE L1 -546 5625 5161 297 0 0 0 chr13 33421783 33421816 -68451353 + (CA)n Simple_repeat Simple_repeat 2 34 0 241 215 115 62 chr13 33423909 33424039 -68449130 - HAL1b LINE L1 -7 1341 1205 789 276 78 63 chr13 33424039 33424782 -68448387 - L1ME4a LINE L1 -79 6042 5314 2164 106 0 48 chr13 33424976 33425287 -68447882 - AluSx SINE Alu -14 298 3 225 0 0 0 chr13 33426433 33426458 -68446711 + (T)n Simple_repeat Simple_repeat 1 25 0 1458 86 0 16 chr13 33427262 33427489 -68445680 + AluY SINE Alu 101 324 0 236 354 18 35 chr13 33429715 33429828 -68443341 - L2 LINE L2 -11 3302 3192 900 262 73 4 chr13 33430865 33431140 -68442029 - L2 LINE L2 -480 2834 2541 192 77 0 0 chr13 33431413 33431439 -68441730 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 207 296 125 0 chr13 33431768 33431856 -68441313 - MIR SINE MIR -51 211 113 433 273 153 6 chr13 33431967 33432143 -68441026 + MIR SINE MIR 52 253 -9 2260 119 3 0 chr13 33432963 33433265 -68439904 - AluSq SINE Alu -10 303 1 3106 217 78 58 chr13 33433498 33434523 -68438646 + MER69 DNA AcHobo 89 1133 -1393 588 128 0 0 chr13 33434524 33434618 -68438551 + L1PA16 LINE L1 6057 6150 -16 2306 111 0 9 chr13 33434625 33434940 -68438229 + AluSx SINE Alu 1 312 0 8072 49 1 0 chr13 33434990 33436755 -68436414 + L1PA6 LINE L1 4387 6154 0 689 171 92 12 chr13 33436814 33436978 -68436191 + MER69 DNA AcHobo 2347 2523 -3 292 319 157 0 chr13 33437067 33437233 -68435936 + MIR SINE MIR 60 251 -11 234 0 0 0 chr13 33437511 33437537 -68435632 + (CA)n Simple_repeat Simple_repeat 2 27 0 2468 93 0 0 chr13 33438062 33438373 -68434796 + AluSx SINE Alu 2 312 0 188 211 42 99 chr13 33439006 33439077 -68434092 - L2 LINE L2 -5 3308 3242 1696 153 7 45 chr13 33439091 33439399 -68433770 - AluJo SINE Alu -16 296 1 1458 117 21 0 chr13 33439686 33439925 -68433244 - L1MA4 LINE L1 -4 6296 6053 23 54 0 0 chr13 33440464 33440501 -68432668 + AT_rich Low_complexity Low_complexity 1 37 0 2503 61 0 10 chr13 33440900 33441212 -68431957 + AluSc SINE Alu 1 309 0 248 336 31 23 chr13 33441363 33441491 -68431678 + L2 LINE L2 3138 3266 -6 262 377 47 22 chr13 33443630 33443991 -68429178 + L2 LINE L2 2283 2652 -662 2992 112 2 0 chr13 33444200 33444639 -68428530 - L1MB3 LINE L1 -8 6175 5736 212 326 32 32 chr13 33444701 33444796 -68428373 + L2 LINE L2 2712 2806 -508 282 314 95 19 chr13 33444853 33444958 -68428211 - L2 LINE L2 -3 3269 3157 2005 149 3 0 chr13 33445608 33445896 -68427273 - AluSx SINE Alu -23 289 1 2275 101 0 25 chr13 33447600 33447917 -68425252 + AluJb SINE Alu 1 309 -3 207 0 0 0 chr13 33448630 33448653 -68424516 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 216 149 0 85 chr13 33448949 33448996 -68424173 + L2 LINE L2 3271 3313 0 1874 156 69 0 chr13 33449336 33449625 -68423544 - AluSx SINE Alu -3 309 1 41071 30 21 2 chr13 33449935 33455970 -68417199 - L1PA2 LINE L1 0 6155 1 233 160 20 0 chr13 33458151 33458201 -68414968 - MLT2B1 LTR ERVL 0 554 504 1379 206 92 70 chr13 33458242 33458699 -68414470 - MLT2B1 LTR ERVL -53 467 1 25 0 0 0 chr13 33458824 33458849 -68414320 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr13 33459886 33459926 -68413243 + AT_rich Low_complexity Low_complexity 1 40 0 701 142 17 50 chr13 33460111 33460231 -68412938 - FLAM_C SINE Alu -11 132 17 377 258 112 102 chr13 33462084 33462476 -68410693 + MLT1L LTR MaLR 6 401 -214 901 171 84 46 chr13 33462817 33463012 -68410157 - MER63 DNA MER1_type -16 1044 837 1651 153 13 67 chr13 33463012 33463326 -68409843 - AluJo SINE Alu -15 297 1 901 171 84 46 chr13 33463326 33463369 -68409800 - MER63 DNA MER1_type -223 837 797 2595 96 2 5 chr13 33463369 33463764 -68409405 - L1M2 LINE L1 -584 5707 5314 1713 182 4 0 chr13 33464746 33465026 -68408143 - AluJo SINE Alu -31 281 1 1525 184 70 27 chr13 33465484 33465815 -68407354 - MLT1A1 LTR MaLR 0 365 21 744 185 99 0 chr13 33465830 33465981 -68407188 - AluJo SINE Alu -97 215 50 553 259 17 32 chr13 33466200 33466364 -68406805 - MIR SINE MIR -66 142 3 222 241 43 139 chr13 33468059 33468246 -68404923 + MIR SINE MIR 21 190 -18 1986 102 88 0 chr13 33468870 33469144 -68404025 - AluSx SINE Alu -14 298 1 1295 137 13 4 chr13 33469160 33469386 -68403783 - L1MB3 LINE L1 -7 6176 5949 494 274 173 10 chr13 33471300 33471508 -68401661 + MIR SINE MIR 7 248 -14 1430 233 7 3 chr13 33472505 33472797 -68400372 + AluJb SINE Alu 2 294 -18 252 0 0 0 chr13 33472800 33472828 -68400341 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1928 148 122 26 chr13 33472963 33473389 -68399780 - MLT1C LTR MaLR 0 467 1 571 284 42 21 chr13 33474269 33474505 -68398664 + L1ME4a LINE L1 5637 5877 -244 1963 159 0 0 chr13 33474609 33474905 -68398264 - AluJo SINE Alu -16 296 1 203 179 0 0 chr13 33475993 33476032 -68397137 + T-rich Low_complexity Low_complexity 3 41 0 289 100 0 0 chr13 33477037 33477077 -68396092 + MADE1 DNA Mariner 1 40 -40 356 241 73 125 chr13 33477187 33477419 -68395750 - L1MC4 LINE L1 -1 8041 7822 753 237 12 43 chr13 33477456 33477713 -68395456 - L1ME2 LINE L1 -10 6154 5906 880 103 0 0 chr13 33477880 33477997 -68395172 - AluSq/x SINE Alu -196 117 1 268 284 0 0 chr13 33478445 33478512 -68394657 + CT-rich Low_complexity Low_complexity 2 68 0 2140 136 0 0 chr13 33479916 33480210 -68392959 - AluSx SINE Alu -18 294 1 265 327 0 19 chr13 33480322 33480429 -68392740 - L3b LINE CR1 -202 1381 1277 2424 80 0 3 chr13 33481231 33481530 -68391639 + AluSc SINE Alu 1 298 -11 332 48 0 0 chr13 33481742 33481784 -68391385 + MER4E LTR ERV1 653 694 -72 201 361 0 0 chr13 33481924 33481985 -68391184 + MIR SINE MIR 42 102 -106 41 48 0 0 chr13 33482307 33482369 -68390800 + AT_rich Low_complexity Low_complexity 1 62 0 427 264 158 10 chr13 33482421 33482713 -68390456 - L1MEc LINE L1 -4709 1687 1353 7076 227 55 26 chr13 33482717 33487199 -68385970 + L1MB7 LINE L1 118 4827 -1817 1110 142 124 34 chr13 33487199 33487397 -68385772 + Tigger2 DNA MER2_type 1 180 -2538 1868 162 0 9 chr13 33487397 33487712 -68385457 - AluJb SINE Alu 0 312 1 1110 142 124 34 chr13 33487712 33487895 -68385274 + Tigger2 DNA MER2_type 180 2718 0 1210 170 9 9 chr13 33487948 33488160 -68385009 - AluJb SINE Alu -16 296 85 4484 187 36 9 chr13 33488160 33489911 -68383258 + L1MB7 LINE L1 4870 6663 -19 1373 178 127 0 chr13 33489913 33490267 -68382902 + L1MC3 LINE L1 7387 7785 0 1786 154 14 7 chr13 33490272 33490564 -68382605 + AluSq SINE Alu 1 294 -19 667 108 0 0 chr13 33490791 33490893 -68382276 + L1PA14 LINE L1 6060 6161 0 1163 167 152 60 chr13 33491493 33491762 -68381407 + AluJo SINE Alu 1 294 -8 631 197 57 8 chr13 33495237 33495359 -68377810 - L2 LINE L2 -4 3309 3182 738 225 24 62 chr13 33495359 33495568 -68377601 + MIR SINE MIR 46 246 -16 197 242 45 45 chr13 33496074 33496140 -68377029 + MIR3 SINE MIR 100 165 -43 383 282 122 19 chr13 33496949 33497105 -68376064 - MIR3 SINE MIR -5 203 32 221 267 0 0 chr13 33497340 33497385 -68375784 - MIR SINE MIR -71 137 93 221 259 17 0 chr13 33497398 33497456 -68375713 - L2 LINE L2 -6 3307 3249 216 286 143 43 chr13 33497499 33497639 -68375530 - L2 LINE L2 -77 3195 3042 2089 134 0 0 chr13 33498590 33498894 -68374275 - AluSx SINE Alu 0 304 1 180 0 0 0 chr13 33499244 33499264 -68373905 + (TA)n Simple_repeat Simple_repeat 1 20 0 203 265 0 0 chr13 33499274 33499323 -68373846 + (TATG)n Simple_repeat Simple_repeat 3 51 0 934 124 35 41 chr13 33499840 33500009 -68373160 + L1MB2 LINE L1 5624 5791 -380 2043 123 17 3 chr13 33500025 33500327 -68372842 + L1MB2 LINE L1 5864 6169 -2 616 172 95 0 chr13 33500332 33500448 -68372721 + MER5B DNA MER1_type 52 178 0 21 36 0 0 chr13 33500950 33500978 -68372191 + AT_rich Low_complexity Low_complexity 1 28 0 2660 164 21 7 chr13 33501007 33501557 -68371612 - L1MA9 LINE L1 -22 6290 5636 180 0 0 0 chr13 33501565 33501585 -68371584 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2580 69 36 3 chr13 33502365 33502698 -68370471 + THE1A LTR MaLR 1 344 -11 12796 78 11 3 chr13 33502717 33504285 -68368884 + THE1A-int LTR MaLR 1 1580 0 2905 79 0 38 chr13 33504285 33504522 -68368647 + THE1A LTR MaLR 1 221 -134 2359 101 0 0 chr13 33504522 33504818 -68368351 + AluSg SINE Alu 4 299 -11 2905 79 0 38 chr13 33504818 33504949 -68368220 + THE1A LTR MaLR 221 355 0 210 245 41 0 chr13 33505071 33505120 -68368049 + L2 LINE L2 3262 3312 -1 507 258 18 42 chr13 33505213 33505380 -68367789 + MIR SINE MIR 46 208 -54 201 39 0 0 chr13 33505849 33505875 -68367294 + (TG)n Simple_repeat Simple_repeat 2 27 0 369 250 67 0 chr13 33507230 33507334 -68365835 + MIR SINE MIR 93 203 -59 421 289 91 37 chr13 33507643 33507840 -68365329 - MIR SINE MIR -42 220 16 336 226 39 59 chr13 33508837 33508939 -68364230 + L2 LINE L2 3209 3308 -5 329 191 0 45 chr13 33508990 33509079 -68364090 + L1MC5 LINE L1 7832 7916 -45 2198 110 0 0 chr13 33509423 33509714 -68363455 - AluSq SINE Alu -22 291 1 2094 146 0 3 chr13 33509719 33510028 -68363141 - AluSx SINE Alu -4 308 1 1769 158 3 24 chr13 33510565 33510857 -68362312 + AluJo SINE Alu 6 291 -21 216 97 0 0 chr13 33510857 33510888 -68362281 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 3419 186 52 14 chr13 33510905 33511534 -68361635 + MER82 DNA MER2_type 1 653 0 23 0 0 0 chr13 33511701 33511724 -68361445 + AT_rich Low_complexity Low_complexity 1 23 0 5987 118 43 4 chr13 33512643 33513581 -68359588 + Tigger3b DNA MER2_type 1 974 -257 588 275 81 31 chr13 33514368 33514626 -68358543 + L2 LINE L2 3041 3311 -2 507 333 24 6 chr13 33514868 33515033 -68358136 + MIR3 SINE MIR 31 198 -10 243 0 0 0 chr13 33515438 33515465 -68357704 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 2020 128 0 4 chr13 33515465 33515746 -68357423 - AluSx SINE Alu -32 280 1 24 0 0 0 chr13 33515746 33515770 -68357399 + AT_rich Low_complexity Low_complexity 1 24 0 1862 142 26 0 chr13 33515886 33516188 -68356981 - AluSx SINE Alu -1 311 2 23 54 0 0 chr13 33517136 33517173 -68355996 + AT_rich Low_complexity Low_complexity 1 37 0 329 212 106 0 chr13 33517441 33517526 -68355643 + MER103 DNA DNA 10 103 -63 423 279 55 38 chr13 33517720 33517903 -68355266 + L2 LINE L2 2772 2957 -357 2138 103 7 17 chr13 33517918 33518208 -68354961 - AluSc SINE Alu -18 291 5 210 188 42 42 chr13 33518844 33518892 -68354277 - MIR3 SINE MIR -49 159 112 303 208 56 0 chr13 33518899 33518971 -68354198 + MER91C DNA MER1_type 33 108 -32 214 176 0 0 chr13 33518981 33519015 -68354154 - MIR SINE MIR -89 119 86 324 321 109 30 chr13 33519140 33519405 -68353764 + L3 LINE CR1 833 1118 -459 255 159 23 0 chr13 33519501 33519545 -68353624 + MIR SINE MIR 218 262 0 327 179 0 0 chr13 33519743 33519810 -68353359 + CT-rich Low_complexity Low_complexity 3 69 0 568 252 189 37 chr13 33519962 33520232 -68352937 - L2 LINE L2 -4 3268 2958 1838 181 0 10 chr13 33520303 33520606 -68352563 - AluJo SINE Alu -9 303 4 284 318 63 16 chr13 33521762 33521888 -68351281 - L2 LINE L2 -18 3295 3164 803 254 46 171 chr13 33521921 33522682 -68350487 - L2 LINE L2 -848 2466 1801 333 0 0 0 chr13 33523976 33524013 -68349156 + (CA)n Simple_repeat Simple_repeat 2 38 0 2544 62 3 3 chr13 33524189 33524494 -68348675 + AluSp SINE Alu 1 305 -8 290 160 0 53 chr13 33525185 33525260 -68347909 - L1ME4a LINE L1 -3 6118 6048 240 35 0 0 chr13 33525918 33525947 -68347222 + (CA)n Simple_repeat Simple_repeat 1 29 0 7839 46 0 0 chr13 33525991 33527062 -68346107 + L1PA6 LINE L1 5078 6148 -6 473 291 16 0 chr13 33527253 33527380 -68345789 - L1ME3A LINE L1 -98 6072 5944 843 277 182 9 chr13 33527430 33527972 -68345197 + LTR50 LTR ERVL 46 771 -24 868 292 82 19 chr13 33528132 33528447 -68344722 - HAL1 LINE L1 -529 1978 1644 1149 257 82 14 chr13 33528459 33529440 -68343729 - HAL1 LINE L1 -913 1594 419 947 257 28 28 chr13 33529489 33529773 -68343396 - HAL1 LINE L1 -2223 284 1 216 0 0 0 chr13 33529802 33529826 -68343343 + (T)n Simple_repeat Simple_repeat 1 24 0 1970 65 19 27 chr13 33529947 33530207 -68342962 - AluY SINE Alu -15 296 39 1158 295 53 28 chr13 33531244 33531752 -68341417 + MLT1K LTR MaLR 66 586 -2 2429 71 0 3 chr13 33532080 33532376 -68340793 - AluY SINE Alu -16 295 1 777 98 0 0 chr13 33532793 33532905 -68340264 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 2115 98 14 4 chr13 33532907 33533184 -68339985 - AluSq SINE Alu -32 281 2 385 190 25 0 chr13 33533269 33533348 -68339821 - L1MB7 LINE L1 0 6184 6104 368 125 80 0 chr13 33533523 33533611 -68339558 + L1ME4a LINE L1 6023 6117 -4 2208 86 0 24 chr13 33533775 33534089 -68339080 - AluSq SINE Alu 0 307 1 25 31 0 0 chr13 33534090 33534122 -68339047 + AT_rich Low_complexity Low_complexity 1 32 0 2186 62 0 0 chr13 33534780 33535085 -68338084 - AluY SINE Alu 0 331 27 22 35 0 0 chr13 33535532 33535561 -68337608 + AT_rich Low_complexity Low_complexity 1 29 0 246 32 0 0 chr13 33536022 33536053 -68337116 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1874 124 19 0 chr13 33536064 33536331 -68336838 - AluSx SINE Alu -40 272 1 403 334 45 51 chr13 33537738 33537975 -68335194 + MIR SINE MIR 3 256 -6 1885 143 6 30 chr13 33539552 33539881 -68333288 - L1MA7 LINE L1 -2 6289 5969 264 330 77 19 chr13 33542011 33542220 -68330949 - L2 LINE L2 -969 2345 2125 2444 78 0 0 chr13 33543041 33543335 -68329834 + AluSc SINE Alu 1 294 -15 1556 178 36 7 chr13 33543630 33543911 -68329258 + AluJo SINE Alu 5 293 -19 1056 321 63 39 chr13 33544665 33545176 -68327993 - L3 LINE CR1 -517 1060 538 5274 113 19 7 chr13 33545182 33546052 -68327117 - Tigger3(Golem) DNA MER2_type -1 3028 2148 538 198 0 27 chr13 33546081 33546192 -68326977 - Tigger3(Golem) DNA MER2_type -2921 108 1 268 254 11 0 chr13 33546786 33546963 -68326206 + (CA)n Simple_repeat Simple_repeat 2 180 0 775 203 92 0 chr13 33547116 33547279 -68325890 + MER45A DNA AcHobo 1 178 0 3889 137 14 60 chr13 33547511 33548234 -68324935 - LTR8 LTR ERV1 0 691 2 2358 108 0 9 chr13 33548301 33548616 -68324553 - AluSx SINE Alu 0 312 1 775 224 35 80 chr13 33548684 33548997 -68324172 - L2 LINE L2 -10 3303 3005 294 229 0 12 chr13 33549841 33549924 -68323245 + LTR33A LTR ERVL 426 507 -16 1095 168 84 4 chr13 33550159 33550409 -68322760 - L1MA9 LINE L1 -32 6280 6011 1298 124 10 0 chr13 33550445 33550654 -68322515 - L1PA14 LINE L1 0 6161 5951 315 265 12 59 chr13 33550818 33550988 -68322181 - HAL1b LINE L1 -437 911 750 234 191 0 0 chr13 33551349 33551396 -68321773 + T-rich Low_complexity Low_complexity 1 47 0 341 322 103 13 chr13 33551464 33551697 -68321472 - HAL1 LINE L1 -590 1917 1664 265 299 57 25 chr13 33552410 33552567 -68320602 - MIR3 SINE MIR -27 181 20 306 0 0 0 chr13 33553516 33553550 -68319619 + (A)n Simple_repeat Simple_repeat 1 34 0 334 339 162 44 chr13 33554041 33554430 -68318739 + L2 LINE L2 2824 3258 -14 1654 312 71 14 chr13 33554684 33555342 -68317827 - L3 LINE CR1 -2 1575 880 21 0 0 0 chr13 33555509 33555530 -68317639 + AT_rich Low_complexity Low_complexity 1 21 0 271 308 9 0 chr13 33555722 33555829 -68317340 + MARNA DNA Mariner 141 248 -338 27 0 0 0 chr13 33556384 33556411 -68316758 + AT_rich Low_complexity Low_complexity 1 27 0 4006 106 21 32 chr13 33557452 33558228 -68314941 - L1PB1 LINE L1 -16 6150 5333 486 226 57 40 chr13 33559379 33559462 -68313707 - MER104 DNA Tc2 -1718 180 100 1514 194 40 48 chr13 33559462 33559860 -68313309 - MLT2C1 LTR ERVL -2 395 1 486 226 57 40 chr13 33559860 33559953 -68313216 - MER104 DNA Tc2 -1798 100 1 281 262 164 16 chr13 33560080 33560202 -68312967 - MIR3 SINE MIR -56 152 13 705 281 83 67 chr13 33560489 33560984 -68312185 + LTR33A LTR ERVL 3 505 -18 1474 142 46 0 chr13 33561082 33561342 -68311827 - MSTB LTR MaLR 0 426 155 975 113 0 0 chr13 33561519 33561661 -68311508 - MSTB LTR MaLR -284 142 1 198 337 22 45 chr13 33561761 33561850 -68311319 - MIR SINE MIR -91 117 31 319 341 121 14 chr13 33561859 33562082 -68311087 + MIR SINE MIR 6 252 -10 2283 104 10 0 chr13 33562258 33562566 -68310603 + AluSx SINE Alu 1 311 -1 240 192 0 19 chr13 33563907 33563959 -68309210 + CT-rich Low_complexity Low_complexity 2 52 0 26826 93 3 15 chr13 33564005 33569025 -68304144 - L1PA7 LINE L1 0 6154 1178 3502 243 58 66 chr13 33569281 33570993 -68302176 + L1ME4a LINE L1 44 1767 -4313 2138 103 14 7 chr13 33570993 33571283 -68301886 + AluSc SINE Alu 1 292 -17 3502 243 58 66 chr13 33571283 33571387 -68301782 + L1ME4a LINE L1 1767 1870 -4210 270 0 0 0 chr13 33571387 33571417 -68301752 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 702 113 0 0 chr13 33571416 33571522 -68301647 + (TA)n Simple_repeat Simple_repeat 1 106 0 3502 243 58 66 chr13 33571417 33571567 -68301602 + L1ME4a LINE L1 1870 2020 -4060 2204 104 16 0 chr13 33571567 33571874 -68301295 + AluSx SINE Alu 1 312 0 3502 243 58 66 chr13 33571874 33573323 -68299846 + L1ME4a LINE L1 2020 3289 -2791 28 29 0 0 chr13 33573518 33573553 -68299616 + AT_rich Low_complexity Low_complexity 1 35 0 8648 178 28 8 chr13 33573553 33575707 -68297462 - L1PA15 LINE L1 -1 6164 3997 2221 101 0 7 chr13 33575707 33576003 -68297166 - AluSq SINE Alu -19 294 1 8648 178 28 8 chr13 33576003 33576435 -68296734 - L1PA15 LINE L1 -2168 3997 3575 4863 126 1 3 chr13 33576502 33577238 -68295931 - L1PA16 LINE L1 -9 6157 5423 2160 200 68 29 chr13 33577239 33578040 -68295129 + L1ME4a LINE L1 5001 5876 -224 668 321 127 3 chr13 33578098 33578459 -68294710 - L2 LINE L2 -969 2345 1940 28 29 0 0 chr13 33578616 33578651 -68294518 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr13 33578773 33578819 -68294350 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr13 33579006 33579036 -68294133 + AT_rich Low_complexity Low_complexity 1 30 0 388 247 119 44 chr13 33580154 33580326 -68292843 + MIR SINE MIR 6 184 -63 545 280 119 13 chr13 33582141 33582377 -68290792 + MIR SINE MIR 2 262 0 247 229 0 0 chr13 33582630 33582691 -68290478 + L1ME4a LINE L1 5922 5982 -73 1462 130 56 53 chr13 33583610 33583933 -68289236 + MER33 DNA MER1_type 1 324 0 350 262 56 9 chr13 33583962 33584069 -68289100 + MIR SINE MIR 69 180 -82 32 0 0 0 chr13 33584082 33584114 -68289055 + AT_rich Low_complexity Low_complexity 1 32 0 251 246 8 29 chr13 33586951 33587079 -68286090 + MER5B DNA MER1_type 1 178 0 25 0 0 0 chr13 33587258 33587283 -68285886 + AT_rich Low_complexity Low_complexity 1 25 0 403 256 103 26 chr13 33587283 33587478 -68285691 - L1ME4a LINE L1 -14 6107 5898 591 347 50 0 chr13 33589693 33589935 -68283234 + MIR SINE MIR 1 254 -8 331 247 173 44 chr13 33589987 33590134 -68283035 + L1ME4a LINE L1 5554 5681 -440 4024 157 14 4 chr13 33590134 33590849 -68282320 - L1MD1 LINE L1 -1 6241 5520 331 247 173 44 chr13 33590849 33591065 -68282104 + L1ME4a LINE L1 5681 5964 -157 373 327 72 33 chr13 33591286 33591803 -68281366 - L1ME4a LINE L1 -1999 5809 5273 445 270 89 58 chr13 33591822 33592115 -68281054 - L1ME4a LINE L1 -890 5256 4955 234 226 48 0 chr13 33592344 33592406 -68280763 + L1ME LINE L1 5855 5919 -202 31 26 0 0 chr13 33592662 33592700 -68280469 + AT_rich Low_complexity Low_complexity 1 38 0 807 299 30 15 chr13 33592700 33592964 -68280205 - L3 LINE CR1 -17 1560 1293 189 0 0 0 chr13 33592970 33592991 -68280178 + (T)n Simple_repeat Simple_repeat 1 21 0 761 323 18 4 chr13 33593091 33593320 -68279849 - MIR SINE MIR -23 239 8 1204 243 56 21 chr13 33593360 33593698 -68279471 - MLT1H LTR MaLR -197 352 3 225 108 0 0 chr13 33597855 33597892 -68275277 + (TG)n Simple_repeat Simple_repeat 2 38 0 423 320 155 0 chr13 33598181 33598387 -68274782 - MIR SINE MIR -6 256 19 536 261 13 32 chr13 33598396 33598553 -68274616 - MER5A DNA MER1_type 0 189 36 603 238 121 29 chr13 33599107 33599313 -68273856 - MIR SINE MIR -12 250 26 244 305 0 49 chr13 33600426 33600508 -68272661 + MIR SINE MIR 61 138 -124 433 284 56 0 chr13 33600986 33601148 -68272021 - LTR67 LTR ERVL -7 550 380 2166 159 17 26 chr13 33601418 33601847 -68271322 + MSTB LTR MaLR 1 363 -1 1946 171 7 3 chr13 33602658 33602967 -68270202 - AluJo SINE Alu -2 310 1 431 235 35 0 chr13 33602982 33603067 -68270102 - L2 LINE L2 -38 3234 3147 2762 162 17 53 chr13 33604061 33604641 -68268528 - MER89 LTR ERV1 0 559 1 329 310 55 28 chr13 33605308 33605453 -68267716 - MIR SINE MIR -34 228 80 445 236 43 14 chr13 33605459 33605599 -68267570 + LTR1 LTR ERV1 77 220 -565 406 199 23 136 chr13 33605724 33605900 -68267269 + LTR28 LTR ERV1 865 1020 0 3315 177 21 34 chr13 33605900 33606628 -68266541 + L1MA10 LINE L1 5579 6296 -38 723 139 0 0 chr13 33606634 33606742 -68266427 - FLAM_C SINE Alu -15 128 21 24 0 0 0 chr13 33607431 33607455 -68265714 + AT_rich Low_complexity Low_complexity 1 24 0 340 306 104 53 chr13 33608731 33608951 -68264218 + L1P LINE L1 2852 3059 -3087 2049 161 0 3 chr13 33608951 33609262 -68263907 + AluJb SINE Alu 1 310 -2 340 306 104 53 chr13 33609262 33609465 -68263704 + L1P LINE L1 3059 3250 -2896 1868 197 28 0 chr13 33609465 33609820 -68263349 - MLT1A1 LTR MaLR 0 365 1 340 306 104 53 chr13 33609820 33611043 -68262126 + L1P LINE L1 3250 4583 -1563 261 278 0 0 chr13 33611314 33611368 -68261801 + L2 LINE L2 3214 3267 -5 1456 190 4 15 chr13 33611466 33611735 -68261434 - AluJo SINE Alu -36 276 11 905 250 5 5 chr13 33611796 33611984 -68261185 - MER5A DNA MER1_type -1 188 1 194 174 22 0 chr13 33612042 33612088 -68261081 + (TA)n Simple_repeat Simple_repeat 1 47 0 706 254 119 13 chr13 33612179 33612415 -68260754 - MIR SINE MIR 0 262 2 1318 267 75 3 chr13 33613557 33613946 -68259223 + L2 LINE L2 2434 2850 -464 1339 255 204 51 chr13 33613979 33615068 -68258101 + L2 LINE L2 1251 3199 -114 604 253 195 34 chr13 33616271 33616599 -68256570 + MLT1J2 LTR MaLR 6 386 -64 1969 176 0 0 chr13 33616599 33616901 -68256268 + AluJb SINE Alu 1 302 -10 1625 190 0 11 chr13 33617536 33617820 -68255349 + AluJo SINE Alu 15 295 -17 493 248 0 0 chr13 33617831 33617960 -68255209 + L1MC4a LINE L1 2230 2358 -4038 * 809 278 12 12 chr13 33617959 33618290 -68254879 + L1MC4a LINE L1 3342 3672 -2543 * 994 217 94 8 chr13 33618286 33618669 -68254500 + L1ME4a LINE L1 4233 4648 -1567 6766 182 54 13 chr13 33618679 33620170 -68252999 + L1 LINE L1 3105 4671 -1475 3037 67 0 0 chr13 33620170 33620560 -68252609 - L1PA7 LINE L1 -1 6153 5764 6766 182 54 13 chr13 33620560 33620711 -68252458 + L1 LINE L1 4671 4814 -1332 308 293 117 18 chr13 33620749 33621022 -68252147 + L1MC4a LINE L1 3754 4053 -2162 37 86 0 0 chr13 33621225 33621318 -68251851 + AT_rich Low_complexity Low_complexity 1 93 0 2236 85 0 31 chr13 33621328 33621645 -68251524 + AluSq SINE Alu 1 308 0 335 286 105 40 chr13 33621648 33622274 -68250895 + L1MC4a LINE L1 5327 5616 -695 284 167 24 24 chr13 33622297 33622381 -68250788 + (TA)n Simple_repeat Simple_repeat 1 84 0 2471 75 0 0 chr13 33622588 33622883 -68250286 - AluY SINE Alu -16 295 1 498 255 38 33 chr13 33622963 33623175 -68249994 + L1ME4a LINE L1 5460 5672 -518 200 313 15 0 chr13 33623255 33623322 -68249847 + MIR SINE MIR 185 252 -10 2664 77 3 35 chr13 33623357 33623733 -68249436 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr13 33623753 33623781 -68249388 + AT_rich Low_complexity Low_complexity 1 28 0 395 217 72 46 chr13 33623918 33624070 -68249099 + L1ME4a LINE L1 6013 6168 -22 196 321 0 0 chr13 33624128 33624184 -68248985 + MIR SINE MIR 50 105 -157 2109 76 40 43 chr13 33625142 33625445 -68247724 + AluY SINE Alu 2 303 -8 507 226 250 0 chr13 33625475 33625639 -68247530 + L2 LINE L2 2593 2797 -517 270 204 0 0 chr13 33625639 33625693 -68247476 - MER94 DNA DNA 0 134 81 739 284 82 39 chr13 33625699 33626030 -68247139 + L2 LINE L2 2969 3313 0 298 303 66 41 chr13 33626505 33626627 -68246542 - MIR SINE MIR -115 147 23 252 86 0 0 chr13 33626898 33626933 -68246236 + (T)n Simple_repeat Simple_repeat 1 35 0 240 300 0 0 chr13 33627925 33627985 -68245184 + L2 LINE L2 3250 3309 -4 789 257 76 16 chr13 33628074 33628377 -68244792 - L1MEd LINE L1 -5793 326 6 343 287 95 26 chr13 33628772 33628933 -68244236 - MIR SINE MIR -50 212 42 21 0 0 0 chr13 33629034 33629055 -68244114 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr13 33629275 33629300 -68243869 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 218 244 202 48 chr13 33629870 33630038 -68243131 + L2 LINE L2 3119 3312 -1 306 291 0 34 chr13 33630731 33630848 -68242321 - MIR SINE MIR -48 214 102 23 0 0 0 chr13 33631717 33631740 -68241429 + AT_rich Low_complexity Low_complexity 1 23 0 1014 134 34 0 chr13 33632479 33632628 -68240541 + FRAM SINE Alu 1 151 -25 378 226 12 0 chr13 33632644 33632728 -68240441 - MER96B DNA MER1_type? -318 99 15 311 286 20 0 chr13 33633005 33633103 -68240066 + MIR SINE MIR 117 216 -46 525 264 39 0 chr13 33633164 33633293 -68239876 + MIR SINE MIR 98 231 -31 244 336 0 18 chr13 33633302 33633415 -68239754 + (CTA)n Simple_repeat Simple_repeat 2 112 0 21 57 0 0 chr13 33634474 33634509 -68238660 + AT_rich Low_complexity Low_complexity 1 35 0 206 248 30 20 chr13 33634561 33634662 -68238507 + (TTAA)n Simple_repeat Simple_repeat 4 105 0 692 291 80 8 chr13 33634700 33634937 -68238232 - MIR SINE MIR -8 254 1 263 270 216 9 chr13 33637432 33637467 -68235702 - L2 LINE L2 -1 3271 3245 1700 124 199 10 chr13 33637467 33637773 -68235396 + THE1B LTR MaLR 1 364 0 263 270 216 9 chr13 33637773 33637848 -68235321 - L2 LINE L2 -27 3245 3138 256 284 53 11 chr13 33638209 33638304 -68234865 + L2 LINE L2 2970 3068 -204 315 0 0 0 chr13 33639338 33639373 -68233796 + (CA)n Simple_repeat Simple_repeat 2 36 0 538 289 39 100 chr13 33641648 33642029 -68231140 + L2 LINE L2 2915 3272 0 189 319 22 22 chr13 33643207 33643298 -68229871 + MIR3 SINE MIR 71 161 -47 431 193 0 0 chr13 33643950 33644033 -68229136 - FLAM_C SINE Alu -4 139 57 620 245 38 6 chr13 33644566 33644725 -68228444 + MIR SINE MIR 99 262 0 350 136 30 0 chr13 33646324 33646390 -68226779 + GA-rich Low_complexity Low_complexity 3 70 0 1659 174 18 81 chr13 33646644 33647028 -68226141 - MLT1A2 LTR MaLR 0 374 15 311 175 9 53 chr13 33647041 33647155 -68226014 + GA-rich Low_complexity Low_complexity 3 111 0 366 273 93 35 chr13 33648499 33648665 -68224504 + MER5A DNA MER1_type 1 189 0 311 259 15 96 chr13 33648674 33648809 -68224360 + MIR SINE MIR 20 143 -119 407 250 214 0 chr13 33649243 33649355 -68223814 + MIR3 SINE MIR 19 154 -54 589 281 18 6 chr13 33650700 33650871 -68222298 + MIR SINE MIR 90 262 0 229 258 72 31 chr13 33651913 33652010 -68221159 + LTR16A1 LTR ERVL 1 101 -356 514 250 0 0 chr13 33652177 33652289 -68220880 + LTR16A LTR ERVL 231 342 -108 308 202 155 0 chr13 33652626 33652710 -68220459 - MER5C DNA MER1_type 0 324 228 3255 173 35 21 chr13 33652716 33653368 -68219801 + L1MC3 LINE L1 7125 7785 0 437 277 62 0 chr13 33653425 33653555 -68219614 - MER5C DNA MER1_type -185 139 2 260 217 27 27 chr13 33653555 33653616 -68219553 + MIR3 SINE MIR 103 164 -44 1916 110 8 11 chr13 33654478 33654742 -68218427 + AluSg SINE Alu 33 295 -15 389 274 157 24 chr13 33654988 33655260 -68217909 - MLT1J2 LTR MaLR -13 437 103 4605 106 120 131 chr13 33655263 33656682 -68216487 - pTR5 LTR ERV1 0 2438 743 321 202 149 43 chr13 33656682 33656776 -68216393 - MLT1J1 LTR MaLR -303 106 3 499 302 31 78 chr13 33656935 33657190 -68215979 + MIR SINE MIR 10 252 -10 * 565 302 49 22 chr13 33657167 33657392 -68215777 - MIR SINE MIR -1 261 31 3086 222 60 44 chr13 33657460 33659141 -68214028 - L1ME1 LINE L1 -5 6095 4387 3688 130 2 26 chr13 33659141 33659681 -68213488 + MER1A DNA MER1_type 1 527 0 182 277 0 0 chr13 33659793 33659840 -68213329 + MIR SINE MIR 108 154 -108 270 0 0 0 chr13 33660042 33660072 -68213097 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 241 234 0 65 chr13 33660595 33660672 -68212497 - MLT1J2 LTR MaLR -2 448 377 324 212 74 50 chr13 33660724 33660896 -68212273 - MLT1J2 LTR MaLR -166 243 68 613 311 58 9 chr13 33661203 33661428 -68211741 + MERVL LTR ERVL 4746 4981 -504 746 213 53 92 chr13 33661437 33661817 -68211352 - L1ME1 LINE L1 -2795 3285 2921 1647 261 121 21 chr13 33661820 33662434 -68210735 - L1ME1 LINE L1 -5313 757 83 1790 253 97 4 chr13 33662754 33663229 -68209940 + LTR33 LTR ERVL 1 519 -2 257 250 10 48 chr13 33663349 33663453 -68209716 - MIR SINE MIR -56 206 107 702 292 52 17 chr13 33663888 33664121 -68209048 + MIR SINE MIR 8 248 -14 2259 141 5 25 chr13 33667393 33667761 -68205408 - MLT1B LTR MaLR 0 390 30 183 42 0 0 chr13 33667813 33667837 -68205332 + (TA)n Simple_repeat Simple_repeat 1 24 0 305 191 0 71 chr13 33668607 33668733 -68204436 + A-rich Low_complexity Low_complexity 5 121 0 258 246 97 9 chr13 33668769 33668883 -68204286 - L1MC4 LINE L1 -1 8041 7918 337 289 173 5 chr13 33668894 33669016 -68204153 - L1MC4 LINE L1 -216 7826 7726 189 0 0 0 chr13 33669016 33669037 -68204132 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 337 289 173 5 chr13 33669037 33669122 -68204047 - L1MC4 LINE L1 -316 7726 7584 208 213 347 0 chr13 33669487 33669562 -68203607 + MIR SINE MIR 131 231 -31 210 37 0 0 chr13 33670294 33670321 -68202848 + (CA)n Simple_repeat Simple_repeat 2 28 0 2621 160 5 0 chr13 33671218 33671619 -68201550 + MER57A LTR ERV1 1 403 0 474 292 16 25 chr13 33671716 33671959 -68201210 - L1MEc LINE L1 -4443 2108 1857 729 81 0 10 chr13 33672270 33672369 -68200800 + MER4A LTR ERV1 1 98 -566 1827 134 3 77 chr13 33672369 33672742 -68200427 + MER4A LTR ERV1 261 664 0 1149 280 69 83 chr13 33672831 33673398 -68199771 + MER77 LTR ERV1 41 599 -6 200 204 23 0 chr13 33673960 33674004 -68199165 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 225 132 0 0 chr13 33674758 33674796 -68198373 + (A)n Simple_repeat Simple_repeat 1 38 0 686 296 46 11 chr13 33675008 33675292 -68197877 + L1ME4a LINE L1 5532 5825 -296 248 229 128 18 chr13 33675379 33675488 -68197681 + L1ME4a LINE L1 5960 6080 -41 201 147 0 0 chr13 33676760 33676794 -68196375 + (A)n Simple_repeat Simple_repeat 1 34 0 204 125 0 0 chr13 33676986 33677018 -68196151 + (CTG)n Simple_repeat Simple_repeat 1 32 0 222 118 0 0 chr13 33677397 33677431 -68195738 + (GGGGA)n Simple_repeat Simple_repeat 2 35 0 302 159 32 0 chr13 33677455 33677518 -68195651 + GA-rich Low_complexity Low_complexity 3 67 0 214 116 93 0 chr13 33677553 33677596 -68195573 + GA-rich Low_complexity Low_complexity 4 50 0 24 0 0 0 chr13 33677627 33677651 -68195518 + AT_rich Low_complexity Low_complexity 1 24 0 1477 214 41 6 chr13 33677788 33678106 -68195063 + MER46C DNA MER2_type 3 331 -7 210 97 32 0 chr13 33678111 33678142 -68195027 - MIR SINE MIR -118 144 113 1155 163 25 5 chr13 33679257 33679460 -68193709 - MER20 DNA MER1_type 0 219 13 434 183 12 0 chr13 33679657 33679739 -68193430 + MLT1A2 LTR MaLR 288 370 -4 46 33 0 0 chr13 33679892 33679952 -68193217 + AT_rich Low_complexity Low_complexity 1 60 0 1298 155 16 52 chr13 33679957 33680209 -68192960 + L1MC/D LINE L1 5547 5789 -570 231 61 0 0 chr13 33680301 33680334 -68192835 + (TG)n Simple_repeat Simple_repeat 2 34 0 181 366 24 0 chr13 33681162 33681285 -68191884 + L2 LINE L2 2596 2721 -593 527 289 22 101 chr13 33682205 33682382 -68190787 + L2 LINE L2 3051 3200 -113 4517 130 25 12 chr13 33682382 33683074 -68190095 - L1MB3 LINE L1 0 6183 5483 527 289 22 101 chr13 33683074 33683173 -68189996 + L2 LINE L2 3200 3305 -8 242 324 112 39 chr13 33683203 33683382 -68189787 + MIR SINE MIR 39 230 -32 638 284 17 30 chr13 33683548 33683780 -68189389 + L2 LINE L2 3085 3313 0 328 358 67 65 chr13 33683778 33684242 -68188927 - L2 LINE L2 -4 3268 2804 * 1412 237 15 26 chr13 33684876 33685202 -68187967 - MLT1C LTR MaLR 0 467 144 2532 134 22 6 chr13 33685202 33685561 -68187608 + MLT1A1 LTR MaLR 1 365 0 1412 237 15 26 chr13 33685561 33685576 -68187593 - MLT1C LTR MaLR -323 144 130 * 1707 165 57 9 chr13 33685573 33685889 -68187280 - MLT1C LTR MaLR -135 332 2 322 347 33 0 chr13 33687768 33687889 -68185280 + L1ME LINE L1 137 261 -5944 2443 271 102 15 chr13 33687929 33688792 -68184377 + L1ME LINE L1 177 1114 -5282 * 3999 242 21 10 chr13 33688759 33689795 -68183374 + L1MB3 LINE L1 3612 4659 -1556 * 4788 150 73 10 chr13 33689781 33689825 -68183344 + L1MB3 LINE L1 5293 5333 -919 618 88 0 0 chr13 33689825 33689905 -68183264 - MADE1 DNA Mariner 0 80 1 4788 150 73 10 chr13 33689905 33690757 -68182412 + L1MB3 LINE L1 5333 6248 -4 399 261 30 52 chr13 33691012 33691146 -68182023 - L2 LINE L2 0 3272 3142 211 176 39 0 chr13 33691953 33692004 -68181165 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 247 239 60 0 chr13 33692153 33692220 -68180949 - L2 LINE L2 -8 3305 3235 190 167 130 0 chr13 33692629 33692683 -68180486 - MIR SINE MIR -108 100 40 220 224 0 0 chr13 33693640 33693689 -68179480 + T-rich Low_complexity Low_complexity 1 49 0 227 83 0 28 chr13 33695156 33695192 -68177977 + LTR27 LTR ERV1 498 532 -104 562 271 55 15 chr13 33696482 33696681 -68176488 + MER112 DNA MER1_type 49 255 -5 2429 101 0 0 chr13 33700492 33700799 -68172370 - AluSx SINE Alu -5 307 1 1169 264 71 33 chr13 33700830 33701254 -68171915 + LTR16B LTR ERVL 8 447 -17 1064 115 0 0 chr13 33702100 33702256 -68170913 + MLT1B LTR MaLR 235 390 0 2399 248 67 32 chr13 33702259 33703122 -68170047 + L1ME3A LINE L1 5254 6146 -24 267 286 102 64 chr13 33703187 33703453 -68169716 + MLT1J LTR MaLR 232 507 -4 620 279 117 22 chr13 33703869 33704185 -68168984 - MLT1J LTR MaLR -144 367 22 389 282 86 73 chr13 33705199 33705419 -68167750 + L2 LINE L2 2830 3052 -220 183 293 155 35 chr13 33705492 33705608 -68167561 + L2 LINE L2 3182 3311 -2 702 311 26 7 chr13 33706121 33706394 -68166775 + L1ME3A LINE L1 5445 5722 -448 608 86 0 11 chr13 33706470 33706563 -68166606 + (GGGA)n Simple_repeat Simple_repeat 4 95 0 306 276 79 79 chr13 33706643 33706897 -68166272 + L1ME3A LINE L1 5841 6094 -76 25 0 0 0 chr13 33706965 33706990 -68166179 + AT_rich Low_complexity Low_complexity 1 25 0 353 305 33 8 chr13 33706990 33707104 -68166065 - MIR SINE MIR -93 115 3 1532 179 8 0 chr13 33707140 33707437 -68165732 + L1MB2 LINE L1 5736 6047 -121 2305 114 0 0 chr13 33707976 33708283 -68164886 + AluSg SINE Alu 1 307 -3 1803 86 0 0 chr13 33708744 33708976 -68164193 - L1PA6 LINE L1 -11 6143 5912 1487 47 0 0 chr13 33708977 33709168 -68164001 + L1P2 LINE L1 5613 5803 -351 280 235 136 0 chr13 33709460 33709541 -68163628 + MIR SINE MIR 84 175 -87 386 348 25 0 chr13 33709624 33709785 -68163384 + MIR3 SINE MIR 28 192 -16 289 313 47 0 chr13 33713873 33714001 -68159168 + HAL1b LINE L1 447 580 -768 1567 176 76 3 chr13 33714085 33714375 -68158794 + AluJb SINE Alu 1 311 -1 541 99 0 12 chr13 33714449 33714530 -68158639 - MADE1 DNA Mariner 0 80 1 315 318 47 56 chr13 33715263 33715370 -68157799 - MIR SINE MIR -63 145 40 319 315 42 71 chr13 33715544 33715782 -68157387 + MLT1I LTR MaLR 179 409 0 658 344 113 9 chr13 33715803 33716149 -68157020 - L3 LINE CR1 -940 637 256 2069 109 3 36 chr13 33716643 33716946 -68156223 + AluSq SINE Alu 2 294 -19 380 295 98 23 chr13 33718056 33718229 -68154940 - MIR3 SINE MIR -7 201 16 2048 112 0 0 chr13 33718246 33718562 -68154607 - AluSx SINE Alu 0 329 14 1892 148 42 3 chr13 33718661 33718944 -68154225 - AluJo SINE Alu -18 294 1 222 377 138 13 chr13 33719089 33719320 -68153849 + L2 LINE L2 2718 2977 -337 311 318 70 8 chr13 33719682 33719811 -68153358 + L1ME4a LINE L1 5259 5395 -2413 980 92 15 0 chr13 33719813 33719944 -68153225 + AluSc SINE Alu 166 298 -11 544 238 20 0 chr13 33720053 33720200 -68152969 + L1ME4a LINE L1 5520 5669 -452 7706 21 2 0 chr13 33720201 33721287 -68151882 + L1PA3 LINE L1 5130 6217 0 265 265 229 9 chr13 33721315 33721651 -68151518 + L1ME4a LINE L1 5703 6112 -9 257 202 9 101 chr13 33721664 33721773 -68151396 - L1MC4 LINE L1 -1339 6703 6605 387 295 41 16 chr13 33721996 33722118 -68151051 + L2 LINE L2 3143 3267 -5 1867 137 53 66 chr13 33722575 33722954 -68150215 - THE1C LTR MaLR 0 375 2 248 323 217 5 chr13 33723549 33723738 -68149431 + MIR SINE MIR 22 250 -12 393 265 16 81 chr13 33723887 33724072 -68149097 - MIR SINE MIR -70 192 20 360 189 144 27 chr13 33724537 33724648 -68148521 + MER46C DNA MER2_type 1 124 -214 400 248 64 0 chr13 33724704 33724813 -68148356 + MER46C DNA MER2_type 209 324 -14 706 304 12 90 chr13 33725751 33726096 -68147073 + L2 LINE L2 2943 3260 -12 274 304 186 26 chr13 33726400 33726712 -68146457 - L2 LINE L2 -803 2511 2150 226 275 33 11 chr13 33726780 33726871 -68146298 + GA-rich Low_complexity Low_complexity 4 96 0 1460 111 0 0 chr13 33726874 33727063 -68146106 - AluSx SINE Alu -123 189 1 358 312 86 62 chr13 33727078 33727447 -68145722 - L2 LINE L2 -71 3242 2841 2011 132 3 14 chr13 33727447 33727743 -68145426 + AluSx SINE Alu 1 293 -19 358 312 86 62 chr13 33727743 33727866 -68145303 - L2 LINE L2 -472 2841 2723 395 219 144 64 chr13 33728946 33729133 -68144036 + Charlie7 DNA MER1_type 44 245 -2367 2975 220 56 32 chr13 33729192 33730788 -68142381 + L1ME1 LINE L1 4532 6162 -4 375 235 151 17 chr13 33731441 33731560 -68141609 + MIR3 SINE MIR 15 149 -59 225 233 0 0 chr13 33731900 33731943 -68141226 - L2 LINE L2 -4 3309 3267 1738 165 41 48 chr13 33731976 33732369 -68140800 + MLT1B LTR MaLR 1 390 0 3481 137 9 6 chr13 33732932 33733456 -68139713 - MER1A DNA MER1_type 0 527 2 205 359 75 13 chr13 33733607 33733766 -68139403 + L2 LINE L2 2150 2318 -996 4649 225 46 18 chr13 33734666 33735464 -68137705 - L1M4 LINE L1 -1198 4948 4174 1980 148 0 3 chr13 33735464 33735777 -68137392 - AluSx SINE Alu 0 312 1 4649 225 46 18 chr13 33735777 33736493 -68136676 - L1M4 LINE L1 -1972 4174 3317 252 86 0 0 chr13 33737841 33737876 -68135293 + (T)n Simple_repeat Simple_repeat 1 35 0 240 300 0 0 chr13 33738868 33738928 -68134241 + L2 LINE L2 3250 3309 -4 789 257 76 16 chr13 33739017 33739320 -68133849 - L1MEd LINE L1 -5793 326 6 343 287 95 26 chr13 33739715 33739876 -68133293 - MIR SINE MIR -50 212 42 21 0 0 0 chr13 33739977 33739998 -68133171 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr13 33740218 33740243 -68132926 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 218 244 202 48 chr13 33740813 33740981 -68132188 + L2 LINE L2 3119 3312 -1 306 291 0 34 chr13 33741674 33741791 -68131378 - MIR SINE MIR -48 214 102 23 0 0 0 chr13 33742660 33742683 -68130486 + AT_rich Low_complexity Low_complexity 1 23 0 1014 134 34 0 chr13 33743422 33743571 -68129598 + FRAM SINE Alu 1 151 -25 378 226 12 0 chr13 33743587 33743671 -68129498 - MER96B DNA MER1_type? -318 99 15 311 286 20 0 chr13 33743948 33744046 -68129123 + MIR SINE MIR 117 216 -46 525 264 39 0 chr13 33744107 33744236 -68128933 + MIR SINE MIR 98 231 -31 244 336 0 18 chr13 33744245 33744358 -68128811 + (CTA)n Simple_repeat Simple_repeat 2 112 0 21 57 0 0 chr13 33745417 33745452 -68127717 + AT_rich Low_complexity Low_complexity 1 35 0 206 248 30 20 chr13 33745504 33745605 -68127564 + (TTAA)n Simple_repeat Simple_repeat 4 105 0 692 291 80 8 chr13 33745643 33745880 -68127289 - MIR SINE MIR -8 254 1 261 270 216 9 chr13 33748375 33748410 -68124759 - L2 LINE L2 -1 3271 3245 1847 124 199 10 chr13 33748410 33748716 -68124453 + THE1B LTR MaLR 1 364 0 261 270 216 9 chr13 33748716 33748791 -68124378 - L2 LINE L2 -27 3245 3138 254 284 53 11 chr13 33749152 33749247 -68123922 + L2 LINE L2 2970 3068 -204 315 0 0 0 chr13 33750281 33750316 -68122853 + (CA)n Simple_repeat Simple_repeat 2 36 0 541 289 39 100 chr13 33752591 33752972 -68120197 + L2 LINE L2 2915 3272 0 180 325 24 12 chr13 33754150 33754233 -68118936 + MIR3 SINE MIR 71 154 -54 457 232 161 0 chr13 33754898 33755010 -68118159 - FLAM_A SINE Alu 0 133 4 606 245 38 6 chr13 33755509 33755668 -68117501 + MIR SINE MIR 99 262 0 350 136 30 0 chr13 33757267 33757333 -68115836 + GA-rich Low_complexity Low_complexity 3 70 0 1659 174 18 81 chr13 33757587 33757971 -68115198 - MLT1A2 LTR MaLR 0 374 15 311 175 9 53 chr13 33757984 33758098 -68115071 + GA-rich Low_complexity Low_complexity 3 111 0 366 273 93 35 chr13 33759442 33759608 -68113561 + MER5A DNA MER1_type 1 189 0 311 259 15 96 chr13 33759617 33759752 -68113417 + MIR SINE MIR 20 143 -119 407 250 214 0 chr13 33760186 33760298 -68112871 + MIR3 SINE MIR 19 154 -54 589 281 18 6 chr13 33761643 33761814 -68111355 + MIR SINE MIR 90 262 0 229 258 72 31 chr13 33762856 33762953 -68110216 + LTR16A1 LTR ERVL 1 101 -356 514 250 0 0 chr13 33763120 33763232 -68109937 + LTR16A LTR ERVL 231 342 -108 308 202 155 0 chr13 33763569 33763653 -68109516 - MER5C DNA MER1_type 0 324 228 3255 173 35 21 chr13 33763659 33764311 -68108858 + L1MC3 LINE L1 7125 7785 0 437 277 62 0 chr13 33764368 33764498 -68108671 - MER5C DNA MER1_type -185 139 2 260 217 27 27 chr13 33764498 33764559 -68108610 + MIR3 SINE MIR 103 164 -44 1916 110 8 11 chr13 33765421 33765685 -68107484 + AluSg SINE Alu 33 295 -15 389 274 157 24 chr13 33765931 33766203 -68106966 - MLT1J2 LTR MaLR -13 437 103 4605 106 120 131 chr13 33766206 33767625 -68105544 - pTR5 LTR ERV1 0 2438 743 321 202 149 43 chr13 33767625 33767719 -68105450 - MLT1J1 LTR MaLR -303 106 3 499 302 31 78 chr13 33767878 33768133 -68105036 + MIR SINE MIR 10 252 -10 * 565 302 49 22 chr13 33768110 33768335 -68104834 - MIR SINE MIR -1 261 31 3086 222 60 44 chr13 33768403 33770084 -68103085 - L1ME1 LINE L1 -5 6095 4387 3688 130 2 26 chr13 33770084 33770624 -68102545 + MER1A DNA MER1_type 1 527 0 182 277 0 0 chr13 33770736 33770783 -68102386 + MIR SINE MIR 108 154 -108 270 0 0 0 chr13 33770985 33771015 -68102154 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 241 234 0 65 chr13 33771538 33771615 -68101554 - MLT1J2 LTR MaLR -2 448 377 324 212 74 50 chr13 33771667 33771839 -68101330 - MLT1J2 LTR MaLR -166 243 68 613 311 58 9 chr13 33772146 33772371 -68100798 + MERVL LTR ERVL 4746 4981 -504 746 213 53 92 chr13 33772380 33772760 -68100409 - L1ME1 LINE L1 -2795 3285 2921 1647 261 121 21 chr13 33772763 33773377 -68099792 - L1ME1 LINE L1 -5313 757 83 1790 253 97 4 chr13 33773697 33774172 -68098997 + LTR33 LTR ERVL 1 519 -2 257 250 10 48 chr13 33774292 33774396 -68098773 - MIR SINE MIR -56 206 107 702 292 52 17 chr13 33774831 33775064 -68098105 + MIR SINE MIR 8 248 -14 2259 141 5 25 chr13 33778336 33778704 -68094465 - MLT1B LTR MaLR 0 390 30 183 42 0 0 chr13 33778756 33778780 -68094389 + (TA)n Simple_repeat Simple_repeat 1 24 0 305 191 0 71 chr13 33779550 33779676 -68093493 + A-rich Low_complexity Low_complexity 5 121 0 258 246 97 9 chr13 33779712 33779826 -68093343 - L1MC4 LINE L1 -1 8041 7918 337 289 173 5 chr13 33779837 33779959 -68093210 - L1MC4 LINE L1 -216 7826 7726 189 0 0 0 chr13 33779959 33779980 -68093189 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 337 289 173 5 chr13 33779980 33780065 -68093104 - L1MC4 LINE L1 -316 7726 7584 208 213 347 0 chr13 33780430 33780505 -68092664 + MIR SINE MIR 131 231 -31 210 37 0 0 chr13 33781237 33781264 -68091905 + (CA)n Simple_repeat Simple_repeat 2 28 0 2621 160 5 0 chr13 33782161 33782562 -68090607 + MER57A LTR ERV1 1 403 0 474 292 16 25 chr13 33782659 33782902 -68090267 - L1MEc LINE L1 -4443 2108 1857 729 81 0 10 chr13 33783213 33783312 -68089857 + MER4A LTR ERV1 1 98 -566 1827 134 3 77 chr13 33783312 33783685 -68089484 + MER4A LTR ERV1 261 664 0 1149 280 69 83 chr13 33783774 33784341 -68088828 + MER77 LTR ERV1 41 599 -6 200 204 23 0 chr13 33784903 33784947 -68088222 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 225 132 0 0 chr13 33785701 33785739 -68087430 + (A)n Simple_repeat Simple_repeat 1 38 0 686 296 46 11 chr13 33785951 33786235 -68086934 + L1ME4a LINE L1 5532 5825 -296 248 229 128 18 chr13 33786322 33786431 -68086738 + L1ME4a LINE L1 5960 6080 -41 201 147 0 0 chr13 33787703 33787737 -68085432 + (A)n Simple_repeat Simple_repeat 1 34 0 204 125 0 0 chr13 33787929 33787961 -68085208 + (CTG)n Simple_repeat Simple_repeat 1 32 0 1713 215 75 32 chr13 33788332 33788774 -68084395 + L1MA10 LINE L1 5871 6331 -3 636 259 110 0 chr13 33788832 33789060 -68084109 + L1MD3 LINE L1 7743 7995 0 556 134 0 62 chr13 33789071 33789183 -68083986 + L1MB3 LINE L1 6079 6183 0 592 209 0 0 chr13 33789187 33789292 -68083877 + L1PA16 LINE L1 6053 6157 -9 26 0 0 0 chr13 33789292 33789318 -68083851 + AT_rich Low_complexity Low_complexity 1 26 0 1607 205 65 8 chr13 33789322 33789678 -68083491 + MER101 LTR ERV1 72 447 -27 247 308 33 42 chr13 33789865 33789985 -68083184 - MER5B DNA MER1_type -59 119 1 3235 203 111 88 chr13 33890444 33890525 -67982644 - L1M4 LINE L1 -986 5160 5082 2218 98 3 3 chr13 33890525 33890822 -67982347 + AluSx SINE Alu 1 297 -15 3235 203 111 88 chr13 33890822 33891230 -67981939 - L1M4 LINE L1 -1064 5082 4685 2035 130 7 0 chr13 33891230 33891522 -67981647 + AluSx SINE Alu 1 294 -18 3235 203 111 88 chr13 33891522 33891600 -67981569 - L1M4 LINE L1 -1461 4685 4610 495 0 0 0 chr13 33891600 33891655 -67981514 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 769 142 0 25 chr13 33891661 33891781 -67981388 - FLAM_C SINE Alu -15 118 2 3235 203 111 88 chr13 33891781 33892530 -67980639 - L1M4 LINE L1 -1540 4606 3802 2419 94 3 0 chr13 33892530 33892838 -67980331 - AluSg SINE Alu -1 309 1 3235 203 111 88 chr13 33892838 33892849 -67980320 - L1M4 LINE L1 -2344 3802 3793 6162 164 24 25 chr13 33892856 33894090 -67979079 - L1MC1 LINE L1 -6 6327 5093 2500 54 0 10 chr13 33894090 33894388 -67978781 + AluY SINE Alu 1 295 -16 6162 164 24 25 chr13 33894388 33894405 -67978764 - L1MC1 LINE L1 -1240 5093 5077 2516 166 26 5 chr13 33894405 33894822 -67978347 - MSTB LTR MaLR 0 426 1 6162 164 24 25 chr13 33894822 33895155 -67978014 - L1MC1 LINE L1 -1256 5077 4746 744 194 0 43 chr13 33895155 33895294 -67977875 - FLAM_A SINE Alu 0 133 1 6162 164 24 25 chr13 33895294 33895413 -67977756 - L1MC1 LINE L1 -1587 4746 4628 440 206 0 0 chr13 33895417 33895490 -67977679 - FLAM_A SINE Alu -64 78 6 7947 217 38 72 chr13 33895498 33896530 -67976639 - L1MEc LINE L1 -1401 4814 3749 1872 164 6 13 chr13 33896530 33896842 -67976327 - AluJo SINE Alu -2 310 1 7947 217 38 72 chr13 33896842 33897752 -67975417 - L1MEc LINE L1 -2466 3749 2810 2111 65 0 8 chr13 33897752 33898013 -67975156 + AluY SINE Alu 40 298 -13 7947 217 38 72 chr13 33898013 33898458 -67974711 - L1MEc LINE L1 -3405 2810 2352 2025 122 10 32 chr13 33898458 33898769 -67974400 + AluSx SINE Alu 1 304 -8 7947 217 38 72 chr13 33898769 33898985 -67974184 - L1MEc LINE L1 -3863 2352 2371 2286 120 0 0 chr13 33898985 33899293 -67973876 - AluSg SINE Alu 0 310 3 7947 217 38 72 chr13 33899293 33899731 -67973438 - L1MEc LINE L1 -3843 2372 1921 2510 206 37 19 chr13 33899708 33900299 -67972870 + L1M4 LINE L1 4446 5047 -1099 * 1786 216 45 31 chr13 33900427 33900875 -67972294 + LTR40c LTR ERVL 8 461 -4 449 267 50 40 chr13 33900892 33901117 -67972052 - L1MC5 LINE L1 -534 7493 7236 994 151 7 0 chr13 33902461 33902613 -67970556 + FRAM SINE Alu 21 173 -3 498 161 23 11 chr13 33902613 33902700 -67970469 + polypurine Low_complexity Low_complexity 1 88 0 520 173 6 40 chr13 33902707 33902880 -67970289 + GA-rich Low_complexity Low_complexity 3 169 0 389 137 0 11 chr13 33902872 33902967 -67970202 + (CAG)n Simple_repeat Simple_repeat 2 95 0 * 360 133 0 0 chr13 33902971 33903031 -67970138 + (GGA)n Simple_repeat Simple_repeat 3 62 0 5971 166 77 28 chr13 33903044 33903127 -67970042 + MER21A-int LTR ERV1 1231 1309 -2882 861 165 0 8 chr13 33903127 33903260 -67969909 + FLAM_C SINE Alu 1 132 -1 5971 166 77 28 chr13 33903260 33904306 -67968863 + MER21A-int LTR ERV1 1309 2415 -1776 * 7436 140 34 51 chr13 33904286 33904926 -67968243 + MER21A-int LTR ERV1 2841 3491 -700 2309 84 3 0 chr13 33904926 33905223 -67967946 + AluY SINE Alu 1 298 -13 7436 140 34 51 chr13 33905223 33905657 -67967512 + MER21A-int LTR ERV1 3491 3890 -301 1589 188 0 33 chr13 33905657 33905960 -67967209 + AluJb SINE Alu 1 293 -19 7436 140 34 51 chr13 33905960 33906207 -67966962 + MER21A-int LTR ERV1 3890 4140 -51 551 122 41 0 chr13 33906281 33906379 -67966790 + MER21A LTR ERV1 1 102 -829 2140 116 3 0 chr13 33906379 33906664 -67966505 + AluSx SINE Alu 1 286 -26 249 196 0 0 chr13 33906664 33906720 -67966449 + (TA)n Simple_repeat Simple_repeat 1 56 0 1042 178 163 15 chr13 33906736 33907068 -67966101 + MER21B LTR ERV1 93 494 -369 297 224 0 0 chr13 33907079 33907137 -67966032 - MLT1D LTR MaLR -52 453 396 3195 75 19 0 chr13 33907146 33907562 -67965607 + MER41A LTR ERV1 1 424 -130 2110 143 0 0 chr13 33907562 33907869 -67965300 - AluSx SINE Alu -5 307 1 1811 115 4 4 chr13 33907870 33908122 -67965047 + AluSq SINE Alu 50 301 -12 720 102 0 74 chr13 33908122 33908230 -67964939 + MER30 DNA MER1_type 131 230 0 1284 125 103 22 chr13 33908263 33908487 -67964682 - MLT1D LTR MaLR -261 244 3 2031 115 14 3 chr13 33908516 33908802 -67964367 - AluSc SINE Alu -20 289 1 4361 155 27 10 chr13 33909163 33910270 -67962899 - L1PB1 LINE L1 -68 6083 4753 2179 112 3 3 chr13 33910270 33910565 -67962604 - AluSx SINE Alu -17 295 1 4361 155 27 10 chr13 33910565 33911196 -67961973 - L1PB1 LINE L1 -1398 4753 4134 3952 90 15 43 chr13 33911196 33911229 -67961940 - MER4B LTR ERV1 -24 586 554 2205 115 0 0 chr13 33911229 33911515 -67961654 + AluSx SINE Alu 1 286 -26 3952 90 15 43 chr13 33911515 33912084 -67961085 - MER4B LTR ERV1 -56 554 1 2416 87 0 0 chr13 33912238 33912538 -67960631 - AluY SINE Alu -11 300 1 1302 200 12 4 chr13 33912748 33912998 -67960171 + L1MB7 LINE L1 4853 5104 -1042 1767 237 36 48 chr13 33913000 33913439 -67959730 - MLT2B3 LTR ERVL -3 551 118 2063 128 7 7 chr13 33913439 33913735 -67959434 - AluSx SINE Alu -16 296 1 1007 120 0 0 chr13 33913746 33913879 -67959290 - AluSq/x SINE Alu -179 133 1 795 127 16 0 chr13 33913879 33914005 -67959164 - MLT2B3 LTR ERVL -387 128 1 4331 189 46 15 chr13 33914008 33915051 -67958118 + L1MB7 LINE L1 5103 6184 0 1980 128 3 20 chr13 33915058 33915355 -67957814 + AluJo SINE Alu 1 292 -20 2348 102 0 0 chr13 33915488 33915791 -67957378 + AluSc SINE Alu 1 303 -6 2301 58 3 17 chr13 33916102 33916396 -67956773 + AluY SINE Alu 1 290 -21 1034 218 0 0 chr13 33916558 33916732 -67956437 - FAM SINE Alu -1 174 1 22 56 0 0 chr13 33917972 33918008 -67955161 + AT_rich Low_complexity Low_complexity 1 36 0 557 101 0 0 chr13 33918124 33918193 -67954976 - AluSq/x SINE Alu -210 103 35 1390 122 0 0 chr13 33918193 33918381 -67954788 + AluSq SINE Alu 111 298 -15 480 114 0 9 chr13 33918391 33918610 -67954559 + AluJb SINE Alu 1 306 -6 2196 113 3 13 chr13 33918900 33919210 -67953959 - AluSx SINE Alu -5 307 1 879 271 61 4 chr13 33919245 33919492 -67953677 + MIR SINE MIR 2 262 0 3305 87 24 0 chr13 33920537 33920961 -67952208 + MER57B LTR ERV1 1 434 0 237 327 82 18 chr13 33920961 33921071 -67952098 + MIR SINE MIR 35 151 -111 207 0 0 0 chr13 33921196 33921219 -67951950 + (A)n Simple_repeat Simple_repeat 1 23 0 2393 80 13 0 chr13 33921691 33921993 -67951176 - AluSx SINE Alu -6 306 1 322 324 9 9 chr13 33924981 33925089 -67948080 - L2 LINE L2 0 3313 3206 2382 81 16 7 chr13 33925323 33925633 -67947536 - AluSq SINE Alu 0 313 1 255 286 60 0 chr13 33925875 33925959 -67947210 + MARNA DNA Mariner 90 178 -408 * 320 266 79 22 chr13 33925900 33926039 -67947130 - MARNA DNA Mariner -120 466 320 306 172 156 0 chr13 33926044 33926108 -67947061 + MARNA DNA Mariner 473 546 -40 2356 100 0 3 chr13 33926279 33926590 -67946579 - AluSx SINE Alu -2 310 1 332 336 49 28 chr13 33926616 33926759 -67946410 - MLT1K LTR MaLR -322 266 121 1664 170 4 0 chr13 33927976 33928241 -67944928 - AluJb SINE Alu -45 267 2 21 0 0 0 chr13 33928309 33928330 -67944839 + AT_rich Low_complexity Low_complexity 1 21 0 2214 92 0 7 chr13 33928429 33928737 -67944432 + AluSg SINE Alu 1 306 0 318 244 8 84 chr13 33929008 33929127 -67944042 + MIR SINE MIR 61 170 -92 2244 106 0 3 chr13 33929304 33929597 -67943572 - AluSg SINE Alu -6 304 13 2186 120 0 0 chr13 33929822 33930114 -67943055 + AluSx SINE Alu 4 295 -17 2254 100 7 3 chr13 33930116 33930425 -67942744 + AluSg SINE Alu 1 310 0 988 191 0 12 chr13 33930577 33930745 -67942424 - FRAM SINE Alu 0 166 1 934 162 0 7 chr13 33930777 33930925 -67942244 + AluJo SINE Alu 5 151 -161 589 265 110 15 chr13 33931210 33931410 -67941759 - MIR SINE MIR -41 221 3 1417 159 0 0 chr13 33931446 33931666 -67941503 - AluJb SINE Alu -9 303 84 2268 101 16 3 chr13 33932388 33932696 -67940473 - AluSx SINE Alu 0 312 1 2235 97 0 3 chr13 33934071 33934379 -67938790 - AluY SINE Alu -4 307 1 472 173 113 125 chr13 33934483 33934507 -67938662 - MIR SINE MIR 0 262 239 2213 100 0 3 chr13 33934507 33934796 -67938373 - AluSg SINE Alu -20 290 3 472 173 113 125 chr13 33934796 33934880 -67938289 - MIR SINE MIR -23 239 156 306 0 0 0 chr13 33934880 33934914 -67938255 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2234 111 0 7 chr13 33934916 33935214 -67937955 - AluSq SINE Alu -14 299 4 472 173 113 125 chr13 33935214 33935269 -67937900 - MIR SINE MIR -107 155 97 1606 166 14 38 chr13 33935302 33935421 -67937748 + AluJb SINE Alu 1 121 -191 216 97 0 0 chr13 33935421 33935452 -67937717 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1606 166 14 38 chr13 33935452 33935621 -67937548 + AluJb SINE Alu 121 282 -30 2497 60 0 13 chr13 33935622 33935924 -67937245 + AluSp SINE Alu 1 298 -15 716 147 184 7 chr13 33936122 33936258 -67936911 + FRAM SINE Alu 7 166 -10 2297 109 0 0 chr13 33936365 33936668 -67936501 + AluSx SINE Alu 1 303 -9 214 319 0 42 chr13 33937014 33937086 -67936083 + MIR3 SINE MIR 109 177 -31 967 192 98 0 chr13 33937324 33937517 -67935652 + MIR SINE MIR 9 220 -42 80 21 0 0 chr13 33937558 33937652 -67935517 + AT_rich Low_complexity Low_complexity 1 94 0 2892 97 8 3 chr13 33938486 33938859 -67934310 - THE1C LTR MaLR 0 375 1 2351 113 0 0 chr13 33938919 33939230 -67933939 - AluSx SINE Alu -1 311 1 332 0 47 0 chr13 33939616 33939659 -67933510 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 939 132 0 0 chr13 33939660 33939796 -67933373 - AluJo/FRAM SINE Alu -32 280 145 229 146 0 125 chr13 33939797 33939845 -67933324 - AluJo/FRAM SINE Alu -135 168 127 827 165 13 106 chr13 33939850 33940087 -67933082 - L1MC5 LINE L1 -50 7911 7697 2065 112 3 62 chr13 33940162 33940340 -67932829 - AluSx SINE Alu -10 302 150 2263 100 0 0 chr13 33940340 33940631 -67932538 - AluSc SINE Alu -4 305 15 2065 112 3 62 chr13 33940631 33940773 -67932396 - AluSx SINE Alu -162 150 1 2143 115 0 10 chr13 33940897 33941220 -67931949 + AluSx SINE Alu 6 312 0 1772 119 112 7 chr13 33941230 33941507 -67931662 + AluSg SINE Alu 1 306 -4 1605 175 6 32 chr13 33941551 33941865 -67931304 + AluJb SINE Alu 6 311 -1 2456 68 0 0 chr13 33942505 33942824 -67930345 + AluY SINE Alu 1 319 0 187 292 69 0 chr13 33942906 33942978 -67930191 + L2 LINE L2 1358 1434 -1880 543 83 52 42 chr13 33943291 33943387 -67929782 - L1PA13 LINE L1 0 6163 6067 215 319 33 22 chr13 33943447 33943538 -67929631 + L2 LINE L2 1844 1935 -1379 254 341 32 0 chr13 33943553 33943676 -67929493 - L1ME3 LINE L1 -9 6153 6027 1899 213 23 19 chr13 33943782 33944214 -67928955 - L1ME1 LINE L1 -95 6071 5638 674 262 35 0 chr13 33944217 33944419 -67928750 + L1MD3 LINE L1 7787 7995 0 21 0 0 0 chr13 33944510 33944531 -67928638 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 33944665 33944686 -67928483 + AT_rich Low_complexity Low_complexity 1 21 0 257 279 103 44 chr13 33945971 33946083 -67927086 + MIR SINE MIR 108 232 -30 2174 81 0 14 chr13 33946083 33946396 -67926773 + AluY SINE Alu 2 310 0 257 279 103 44 chr13 33946396 33946418 -67926751 + MIR SINE MIR 232 251 -11 2299 119 0 0 chr13 33946604 33946914 -67926255 - AluSg SINE Alu 0 310 1 485 182 50 10 chr13 33946918 33947017 -67926152 + MER5A DNA MER1_type 2 104 -85 23 33 0 0 chr13 33947368 33947398 -67925771 + AT_rich Low_complexity Low_complexity 1 30 0 2251 100 7 0 chr13 33947398 33947689 -67925480 - AluSc SINE Alu -16 293 1 1965 153 78 21 chr13 33947877 33948286 -67924883 + L1MC3 LINE L1 7337 7772 -13 2116 115 3 3 chr13 33948286 33948582 -67924587 + AluSx SINE Alu 1 296 -16 1965 153 78 21 chr13 33948582 33948596 -67924573 + L1MC3 LINE L1 7772 7784 -1 2486 50 3 10 chr13 33948604 33948906 -67924263 + AluY SINE Alu 1 300 -11 6871 131 34 51 chr13 33950074 33950608 -67922561 - Tigger3b DNA MER2_type -1797 1231 689 2490 69 0 7 chr13 33950608 33950911 -67922258 + AluSc SINE Alu 1 301 -8 6871 131 34 51 chr13 33950911 33951323 -67921846 - Tigger3b DNA MER2_type -2339 689 271 680 85 0 11 chr13 33951323 33951417 -67921752 + HY4 scRNA scRNA 1 93 0 6871 131 34 51 chr13 33951417 33951439 -67921730 - Tigger3b DNA MER2_type -2757 271 250 2095 127 3 0 chr13 33951439 33951730 -67921439 + AluSx SINE Alu 1 292 -20 6871 131 34 51 chr13 33951730 33952012 -67921157 - Tigger3b DNA MER2_type -2778 250 1 2062 86 0 96 chr13 33952036 33952360 -67920809 + AluY SINE Alu 1 293 -18 1418 158 70 40 chr13 33952627 33952899 -67920270 + AluJb SINE Alu 13 292 -20 2301 97 3 0 chr13 33953026 33953324 -67919845 + AluSp SINE Alu 1 299 -14 202 223 74 91 chr13 33953421 33953513 -67919656 + L3 LINE CR1 996 1087 -490 2024 130 0 23 chr13 33953513 33953814 -67919355 - AluSx SINE Alu -17 295 2 202 223 74 91 chr13 33953814 33953842 -67919327 + L3 LINE CR1 1087 1114 -463 2587 58 0 6 chr13 33953843 33954154 -67919015 + AluY SINE Alu 1 309 -2 273 317 109 35 chr13 33954403 33954605 -67918564 + L3 LINE CR1 1247 1463 -114 1692 196 47 28 chr13 33954607 33954647 -67918522 - MER74A LTR ERVL 0 558 520 1518 211 121 8 chr13 33954647 33955003 -67918166 - MSTD LTR MaLR 0 396 1 1692 196 47 28 chr13 33955003 33955325 -67917844 - MER74A LTR ERVL -38 520 189 2495 81 0 0 chr13 33955523 33955833 -67917336 - AluY SINE Alu -1 310 1 1517 196 32 15 chr13 33955974 33956315 -67916854 - L1M4 LINE L1 -1103 5043 4697 21 0 0 0 chr13 33956322 33956343 -67916826 + AT_rich Low_complexity Low_complexity 1 21 0 2118 137 0 0 chr13 33956344 33956643 -67916526 + AluSx SINE Alu 1 299 -13 2548 184 91 13 chr13 33956644 33957307 -67915862 + L1ME2 LINE L1 5162 5873 -293 2529 69 0 0 chr13 33957524 33957829 -67915340 + AluY SINE Alu 1 305 -6 1093 125 0 7 chr13 33957830 33957982 -67915187 + AluSg/x SINE Alu 134 284 -28 180 0 0 0 chr13 33957987 33958007 -67915162 + (CAA)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr13 33958036 33958067 -67915102 + AT_rich Low_complexity Low_complexity 1 31 0 1769 172 31 0 chr13 33958420 33958711 -67914458 - AluJb SINE Alu -12 300 1 2366 82 7 0 chr13 33958907 33959198 -67913971 + AluSp SINE Alu 1 293 -20 1378 127 174 15 chr13 33959204 33959463 -67913706 + AluSg SINE Alu 1 300 0 312 239 14 99 chr13 33959464 33959606 -67913563 + L1ME2 LINE L1 6025 6154 -10 246 260 13 13 chr13 33959641 33959718 -67913451 + L1MC4 LINE L1 7826 7902 -140 1904 111 41 4 chr13 33959982 33960252 -67912917 - AluSg SINE Alu -30 280 1 2143 89 44 10 chr13 33960543 33960836 -67912333 + AluSc SINE Alu 1 303 -6 1500 152 9 84 chr13 33961094 33961232 -67911937 + AluJo SINE Alu 1 148 -164 2426 54 0 7 chr13 33961232 33961527 -67911642 + AluY SINE Alu 1 293 -18 1500 152 9 84 chr13 33961527 33961710 -67911459 + AluJo SINE Alu 148 298 -14 497 282 178 0 chr13 33962067 33962241 -67910928 - MIR SINE MIR -17 245 41 973 126 0 38 chr13 33962317 33962476 -67910693 - FAM SINE Alu -19 156 4 1771 161 3 14 chr13 33962490 33962781 -67910388 - AluJb SINE Alu -24 288 1 1342 181 261 26 chr13 33963535 33964118 -67909051 - SATR1 Satellite Satellite -3 1834 1389 2381 86 3 3 chr13 33964118 33964421 -67908748 + AluY SINE Alu 1 303 -8 1342 181 261 26 chr13 33964421 33965020 -67908149 - SATR1 Satellite Satellite -448 1389 1 1951 115 3 30 chr13 33965072 33965196 -67907973 + AluSq SINE Alu 13 139 -174 2132 121 24 0 chr13 33965196 33965493 -67907676 + AluSg SINE Alu 1 304 -6 1951 115 3 30 chr13 33965493 33965663 -67907506 + AluSq SINE Alu 139 299 -14 583 187 8 24 chr13 33965665 33965788 -67907381 - FLAM_C SINE Alu -22 121 1 2139 102 20 0 chr13 33965850 33966143 -67907026 - AluSp SINE Alu -14 299 1 1241 208 77 0 chr13 33966418 33966678 -67906491 + AluJb SINE Alu 1 280 -32 390 42 0 0 chr13 33966678 33966726 -67906443 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 1003 177 6 0 chr13 33967325 33967489 -67905680 + FAM SINE Alu 1 165 -10 2043 114 47 0 chr13 33967713 33968010 -67905159 + AluSq SINE Alu 3 313 0 2098 141 3 0 chr13 33968143 33968447 -67904722 - AluSq SINE Alu -8 305 1 1769 152 0 48 chr13 33969050 33969360 -67903809 + AluJb SINE Alu 2 296 -16 1981 120 3 40 chr13 33969484 33969785 -67903384 + AluSx SINE Alu 1 290 -22 1105 277 30 38 chr13 33969938 33970306 -67902863 + MLT1J LTR MaLR 1 365 -146 780 181 289 17 chr13 33970306 33970538 -67902631 + SATR1 Satellite Satellite 158 452 -18 2834 194 18 29 chr13 33970672 33971225 -67901944 + MER74A LTR ERVL 3 549 -9 4197 116 54 18 chr13 33974221 33974903 -67898266 - Tigger3b DNA MER2_type -245 986 280 609 102 0 11 chr13 33974904 33974992 -67898177 + HY4 scRNA scRNA 4 90 -3 1876 162 7 0 chr13 33975025 33975315 -67897854 + AluSx SINE Alu 1 292 -20 412 153 42 0 chr13 33975335 33975407 -67897762 - LOR1-int LTR ERV1 -16 8104 8030 * 1833 103 44 4 chr13 33975406 33975678 -67897491 - LOR1-int LTR ERV1 -2056 6064 5782 * 9242 92 72 34 chr13 33975658 33976390 -67896779 - LOR1-int LTR ERV1 -2596 5524 4821 1755 154 4 0 chr13 33976390 33976643 -67896526 + AluSx SINE Alu 28 281 -31 230 0 33 0 chr13 33976646 33976676 -67896493 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9242 92 72 34 chr13 33976676 33977351 -67895818 - LOR1-int LTR ERV1 -3300 4820 4048 2337 94 3 3 chr13 33977351 33977650 -67895519 - AluY SINE Alu -12 299 1 9242 92 72 34 chr13 33977650 33977763 -67895406 - LOR1-int LTR ERV1 -4072 4048 3941 2264 86 21 0 chr13 33977763 33978053 -67895116 - AluSx SINE Alu -15 297 2 2055 80 44 87 chr13 33978053 33978245 -67894924 - LOR1-int LTR ERV1 -4937 3183 2984 1731 152 7 18 chr13 33978245 33978522 -67894647 + AluSx SINE Alu 1 274 -38 258 32 0 0 chr13 33978530 33978561 -67894608 + (TAA)n Simple_repeat Simple_repeat 1 31 0 2055 80 44 87 chr13 33978561 33978744 -67894425 - LOR1-int LTR ERV1 -5143 2977 2816 32087 107 16 66 chr13 33978750 33983641 -67889528 - L1PA8 LINE L1 -8 6164 1684 2242 126 0 0 chr13 33983641 33983942 -67889227 - AluSg SINE Alu -9 301 1 32087 107 16 66 chr13 33983942 33985539 -67887630 - L1PA8 LINE L1 -4488 1684 9 221 200 0 0 chr13 33985598 33985638 -67887531 + MER5A DNA MER1_type 9 48 -141 14770 94 74 46 chr13 33985783 33986210 -67886959 - LOR1b-int LTR ERV1 -5300 2820 2407 1898 143 58 0 chr13 33986210 33986503 -67886666 + AluSg SINE Alu 1 310 0 14770 94 74 46 chr13 33986503 33987559 -67885610 - LOR1b-int LTR ERV1 -5713 2407 1382 1845 120 88 7 chr13 33987559 33987843 -67885326 - AluSg SINE Alu -3 307 1 14770 94 74 46 chr13 33987843 33988536 -67884633 - LOR1b-int LTR ERV1 -6738 1382 558 2070 119 0 45 chr13 33988536 33988680 -67884489 + AluSg SINE Alu 1 125 -185 2575 47 0 7 chr13 33988680 33988977 -67884192 + AluY SINE Alu 1 295 -16 2070 119 0 45 chr13 33988977 33989143 -67884026 + AluSg SINE Alu 125 297 -13 14770 94 74 46 chr13 33989143 33989505 -67883664 - LOR1b-int LTR ERV1 -7562 558 208 374 39 19 0 chr13 33989505 33989557 -67883612 + (CA)n Simple_repeat Simple_repeat 2 54 0 2252 128 42 8 chr13 33989560 33989919 -67883250 - LOR1b-int LTR ERV1 -7749 371 1 2196 146 30 63 chr13 33989919 33990231 -67882938 - LOR1b LTR ERV1 0 461 165 2413 76 0 0 chr13 33990231 33990521 -67882648 - AluY SINE Alu -13 298 9 2196 146 30 63 chr13 33990521 33990639 -67882530 - LOR1b LTR ERV1 -296 165 45 3656 167 28 56 chr13 33990779 33991344 -67881825 + L1MB8 LINE L1 5403 5983 -195 2294 110 0 7 chr13 33991344 33991652 -67881517 + AluSx SINE Alu 1 306 -6 3656 167 28 56 chr13 33991652 33991813 -67881356 + L1MB8 LINE L1 5983 6107 -71 1920 167 10 10 chr13 33991813 33992125 -67881044 - AluJb SINE Alu 0 312 1 3656 167 28 56 chr13 33992125 33992195 -67880974 + L1MB8 LINE L1 6107 6177 -1 1319 167 50 89 chr13 33992656 33993055 -67880114 - MLT1B LTR MaLR 0 467 2 2318 123 0 0 chr13 33993079 33993389 -67879780 + AluSx SINE Alu 1 310 -2 235 230 204 80 chr13 33993504 33993617 -67879552 + MER5B DNA MER1_type 4 130 -48 4656 147 48 16 chr13 33993685 33994514 -67878655 - L1MC3 LINE L1 -11 7774 6919 276 161 71 0 chr13 33994519 33994575 -67878594 + MER5B DNA MER1_type 119 178 0 481 117 13 0 chr13 33995353 33995430 -67877739 + MER5A DNA MER1_type 1 78 -111 1073 171 6 0 chr13 33995430 33995605 -67877564 + FRAM SINE Alu 1 176 0 480 220 0 85 chr13 33995609 33995750 -67877419 + MER5A DNA MER1_type 61 189 0 314 175 0 32 chr13 33995886 33995949 -67877220 + L2 LINE L2 3196 3256 -16 198 91 0 0 chr13 33996001 33996034 -67877135 + (T)n Simple_repeat Simple_repeat 1 33 0 198 0 0 0 chr13 33996507 33996529 -67876640 + (AGCTG)n Simple_repeat Simple_repeat 3 24 0 241 156 111 0 chr13 33996641 33996686 -67876483 - Charlie8 DNA MER1_type -2227 190 141 3893 147 20 45 chr13 33996837 33997002 -67876167 + L1MB3 LINE L1 5445 5613 -570 2168 130 0 0 chr13 33997002 33997295 -67875874 + AluSx SINE Alu 1 293 -19 3893 147 20 45 chr13 33997295 33997878 -67875291 + L1MB3 LINE L1 5613 6174 -9 306 230 180 0 chr13 33997893 33997993 -67875176 - MIR SINE MIR -5 257 140 198 118 0 0 chr13 33997993 33998027 -67875142 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 297 0 0 0 chr13 33998026 33998059 -67875110 + (GA)n Simple_repeat Simple_repeat 1 33 0 1505 187 26 4 chr13 33998059 33998327 -67874842 - AluJo SINE Alu -37 275 2 729 238 0 0 chr13 33998334 33998481 -67874688 - FRAM SINE Alu -25 151 5 3439 200 57 22 chr13 33998486 33999346 -67873823 - L1ME1 LINE L1 -58 6108 5221 2275 92 0 0 chr13 33999414 33999719 -67873450 - AluY SINE Alu 0 305 1 1394 198 171 20 chr13 33999818 34000162 -67873007 - MSTD LTR MaLR 0 396 1 834 286 55 80 chr13 34000606 34001191 -67871978 + L2 LINE L2 463 1032 -2282 437 214 53 121 chr13 34001203 34001254 -67871915 - L1ME3A LINE L1 -13 6157 6104 994 139 0 61 chr13 34001254 34001434 -67871735 + L1MB5 LINE L1 6000 6168 -6 437 214 53 121 chr13 34001434 34001447 -67871722 - L1ME3A LINE L1 -66 6104 6092 2198 85 0 7 chr13 34001447 34001741 -67871428 + AluSc SINE Alu 1 292 -17 437 214 53 121 chr13 34001741 34001980 -67871189 - L1ME3A LINE L1 -78 6092 5797 1705 85 0 30 chr13 34002369 34002605 -67870564 + AluY SINE Alu 1 229 -82 1103 51 11 62 chr13 34002605 34002783 -67870386 - MER11A LTR ERVK -1002 264 1 297 75 0 0 chr13 34002792 34002832 -67870337 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 1916 142 10 0 chr13 34002850 34003138 -67870031 - AluJb SINE Alu -21 291 1 345 169 0 0 chr13 34003138 34003197 -67869972 + MSTD LTR MaLR 326 384 -12 182 235 161 25 chr13 34003205 34003286 -67869883 - L2 LINE L2 -175 3138 3047 876 261 23 29 chr13 34003383 34003689 -67869480 - L1ME2 LINE L1 -9 6155 5852 1183 180 0 5 chr13 34003710 34003916 -67869253 - AluJo SINE Alu -107 205 1 636 179 36 100 chr13 34003919 34003991 -67869178 - L1M4 LINE L1 -947 5199 5124 2054 124 13 0 chr13 34003991 34004297 -67868872 - AluSx SINE Alu -2 310 1 636 179 36 100 chr13 34004297 34004438 -67868731 - L1M4 LINE L1 -1022 5124 5002 2068 98 3 20 chr13 34004438 34004743 -67868426 - AluSg SINE Alu -6 304 5 636 179 36 100 chr13 34004743 34004779 -67868390 - L1M4 LINE L1 -1144 5002 4965 337 219 49 49 chr13 34004779 34004861 -67868308 - FRAM/FAM SINE Alu -85 81 1 1024 316 91 32 chr13 34004863 34005338 -67867831 - ERVL LTR ERVL -3924 1840 1338 2537 55 0 0 chr13 34006535 34006846 -67866323 + AluY SINE Alu 1 311 0 2218 103 0 0 chr13 34007441 34007742 -67865427 + AluSq SINE Alu 3 303 -10 1213 247 83 53 chr13 34008109 34008215 -67864954 - L1ME3 LINE L1 -220 6336 6235 2719 137 41 33 chr13 34008215 34008703 -67864466 + LTR22B LTR ERVK 1 492 0 1213 247 83 53 chr13 34008703 34008925 -67864244 - L1ME3 LINE L1 -321 6235 6021 1564 197 123 42 chr13 34008925 34009190 -67863979 - MLT1C LTR MaLR 0 467 152 2188 109 3 0 chr13 34009190 34009492 -67863677 - AluSq SINE Alu -10 303 1 1564 197 123 42 chr13 34009492 34009658 -67863511 - MLT1C LTR MaLR -315 152 1 1213 247 83 53 chr13 34009658 34009816 -67863353 - L1ME3 LINE L1 -535 6021 5869 2339 73 0 3 chr13 34009816 34010116 -67863053 - AluY SINE Alu -10 301 3 1213 247 83 53 chr13 34010116 34010327 -67862842 - L1ME3 LINE L1 -687 5869 5613 1362 171 19 31 chr13 34010390 34010647 -67862522 - AluJb SINE Alu -58 254 1 308 273 69 12 chr13 34010684 34010967 -67862202 - L1ME3 LINE L1 -3775 2765 2471 1983 129 0 3 chr13 34011369 34011663 -67861506 + AluSx SINE Alu 1 293 -19 2048 117 0 0 chr13 34011665 34011993 -67861176 + AluSc SINE Alu 1 328 0 704 279 107 95 chr13 34011995 34012085 -67861084 - L1ME3 LINE L1 -4379 2162 2075 1437 212 6 10 chr13 34012085 34012396 -67860773 - AluJo SINE Alu -2 310 1 704 279 107 95 chr13 34012396 34012447 -67860722 - L1ME3 LINE L1 -4466 2075 2026 1973 119 0 17 chr13 34012447 34012749 -67860420 + AluSx SINE Alu 1 297 -15 704 279 107 95 chr13 34012749 34012849 -67860320 - L1ME3 LINE L1 -4515 2026 1929 1713 178 13 3 chr13 34012849 34013147 -67860022 - AluJb SINE Alu -11 301 1 704 279 107 95 chr13 34013147 34013742 -67859427 - L1ME3 LINE L1 -4612 1929 1224 2124 117 3 0 chr13 34014359 34014666 -67858503 + AluSg SINE Alu 1 308 -2 334 203 14 212 chr13 34014802 34014960 -67858209 + MER5B DNA MER1_type 1 104 -74 2205 101 0 0 chr13 34014960 34015258 -67857911 - AluSx SINE Alu -14 298 1 334 203 14 212 chr13 34015258 34015321 -67857848 + MER5B DNA MER1_type 104 178 0 897 147 0 0 chr13 34015383 34015512 -67857657 + FLAM_C SINE Alu 1 129 -4 692 213 21 0 chr13 34015525 34015666 -67857503 + MLT1B LTR MaLR 1 144 -246 1795 119 22 35 chr13 34015826 34016138 -67857031 - AluJo SINE Alu -4 308 1 273 236 0 0 chr13 34016172 34016227 -67856942 + L2 LINE L2 3210 3264 -8 321 245 174 11 chr13 34016701 34016813 -67856356 - MIR SINE MIR -72 136 36 225 0 0 0 chr13 34017538 34017563 -67855606 + (T)n Simple_repeat Simple_repeat 1 25 0 1276 50 12 0 chr13 34017578 34017738 -67855431 - AluY SINE Alu -149 162 1 2156 63 16 16 chr13 34018017 34018320 -67854849 + AluY SINE Alu 1 303 -8 2149 125 0 0 chr13 34018378 34018689 -67854480 - AluSx SINE Alu -1 311 1 430 313 82 13 chr13 34019041 34019268 -67853901 + MIR SINE MIR 15 262 0 2141 107 0 7 chr13 34019625 34019935 -67853234 + AluSg1 SINE Alu 1 308 -1 1013 147 18 6 chr13 34020512 34020682 -67852487 - MER5A DNA MER1_type -13 176 5 451 289 101 7 chr13 34020685 34020834 -67852335 + L2 LINE L2 2605 2767 -547 1010 299 107 13 chr13 34020892 34021286 -67851883 + L2 LINE L2 532 962 -2352 1629 126 3 83 chr13 34021290 34021624 -67851545 - MER4A LTR ERV1 -21 643 261 685 111 0 10 chr13 34021624 34021723 -67851446 - MER4A LTR ERV1 -566 98 1 423 288 245 0 chr13 34021725 34021958 -67851211 + L2 LINE L2 967 1256 -2058 1349 173 38 125 chr13 34021978 34022378 -67850791 - MLT1A1 LTR MaLR 0 365 1 493 191 161 56 chr13 34022392 34022554 -67850615 + MER5A DNA MER1_type 11 189 0 331 281 117 12 chr13 34022595 34022766 -67850403 + L2 LINE L2 1318 1506 -1808 2023 115 30 0 chr13 34022766 34023061 -67850108 - AluSx SINE Alu -8 304 1 1077 145 0 6 chr13 34023346 34023512 -67849657 - AluSp SINE Alu -148 165 1 667 254 177 4 chr13 34023512 34023760 -67849409 + L2 LINE L2 2967 3257 -56 721 235 24 18 chr13 34024068 34024238 -67848931 + MLT1F LTR MaLR 19 189 -353 684 288 54 21 chr13 34024265 34024505 -67848664 + MLT1J LTR MaLR 3 250 -261 1841 146 0 10 chr13 34024569 34024863 -67848306 - AluSx SINE Alu -21 291 1 771 150 277 33 chr13 34024863 34025076 -67848093 + ORSL DNA AcHobo 7 271 -4 303 262 145 29 chr13 34025205 34025377 -67847792 - L2 LINE L2 -211 3061 2870 348 24 0 0 chr13 34025390 34025431 -67847738 + (TG)n Simple_repeat Simple_repeat 2 42 0 433 239 85 85 chr13 34025493 34025752 -67847417 - MER102b DNA MER1_type -17 324 66 2219 75 24 0 chr13 34026334 34026627 -67846542 + AluY SINE Alu 1 300 -11 777 128 0 0 chr13 34026639 34026748 -67846421 + FLAM_C SINE Alu 2 110 -33 186 43 0 0 chr13 34026760 34026783 -67846386 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 404 242 166 6 chr13 34027633 34027790 -67845379 - LTR33A LTR ERVL -44 479 298 4304 156 84 82 chr13 34028128 34028480 -67844689 + L1MC3 LINE L1 6629 6979 -806 2162 116 0 0 chr13 34028480 34028783 -67844386 + AluSx SINE Alu 1 303 -9 4304 156 84 82 chr13 34028783 34028915 -67844254 + L1MC3 LINE L1 6979 7109 -676 258 323 0 0 chr13 34028915 34029008 -67844161 + MLT1F1 LTR MaLR 33 125 -442 4304 156 84 82 chr13 34029008 34029584 -67843585 + L1MC3 LINE L1 7109 7784 -1 2009 134 0 3 chr13 34029599 34029898 -67843271 - AluSx SINE Alu -14 298 1 1392 170 130 4 chr13 34030269 34030522 -67842647 + AluJo SINE Alu 4 288 -14 2143 109 3 0 chr13 34030611 34030913 -67842256 - AluSx SINE Alu -9 303 1 667 226 75 0 chr13 34031506 34031652 -67841517 + MIR SINE MIR 106 262 0 389 283 66 0 chr13 34031650 34031756 -67841413 - MIR3 SINE MIR -46 162 50 * 2592 90 16 19 chr13 34031800 34032165 -67841004 - THE1B LTR MaLR 0 364 1 1261 85 0 6 chr13 34032237 34032401 -67840768 + AluSq SINE Alu 1 163 -150 33 0 0 0 chr13 34032401 34032434 -67840735 + AT_rich Low_complexity Low_complexity 1 33 0 428 301 46 20 chr13 34032713 34032866 -67840303 + L1 LINE L1 3312 3468 -2678 224 239 0 0 chr13 34033292 34033338 -67839831 + A-rich Low_complexity Low_complexity 4 49 0 2207 142 65 70 chr13 34034291 34034749 -67838420 + MER31B LTR ERV1 3 458 -8 2165 115 3 0 chr13 34034976 34035288 -67837881 - AluSq SINE Alu 0 313 1 1589 121 4 12 chr13 34035290 34035539 -67837630 - AluJb SINE Alu -8 304 58 1287 200 108 53 chr13 34035546 34035967 -67837202 - MER66A LTR ERV1 -16 462 99 1611 162 31 45 chr13 34036035 34036066 -67837103 - MER66A-int LTR ERV1 -1 6675 6645 2283 98 0 0 chr13 34036066 34036371 -67836798 - AluSq SINE Alu -8 305 1 1611 162 31 45 chr13 34036371 34036629 -67836540 - MER66A-int LTR ERV1 -31 6645 6390 * 9161 190 82 106 chr13 34036618 34037257 -67835912 - MER66A-int LTR ERV1 -1735 4941 4288 2336 88 0 0 chr13 34037257 34037562 -67835607 + AluSc SINE Alu 1 305 -4 9161 190 82 106 chr13 34037562 34037865 -67835304 - MER66A-int LTR ERV1 -2388 4288 3979 2112 108 3 13 chr13 34037865 34038179 -67834990 - AluSx SINE Alu 0 312 2 9161 190 82 106 chr13 34038179 34038677 -67834492 - MER66A-int LTR ERV1 -2697 3979 3470 360 0 0 0 chr13 34038677 34038717 -67834452 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 1689 168 14 0 chr13 34038717 34038997 -67834172 - AluJb SINE Alu -28 284 1 9161 190 82 106 chr13 34038997 34039191 -67833978 - MER66A-int LTR ERV1 -3205 3471 3274 242 54 0 27 chr13 34039191 34039228 -67833941 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1943 135 0 0 chr13 34039230 34039518 -67833651 - AluSq SINE Alu -25 288 1 9161 190 82 106 chr13 34039518 34040551 -67832618 - MER66A-int LTR ERV1 -3403 3273 2333 4161 189 67 23 chr13 34040536 34042470 -67830699 - MER66A-int LTR ERV1 -4507 2169 65 * 1509 209 85 79 chr13 34042615 34043157 -67830012 - MER66A LTR ERV1 0 478 97 430 277 69 50 chr13 34043158 34043360 -67829809 - MIR SINE MIR -27 235 30 2400 54 0 7 chr13 34044738 34045036 -67828133 + AluY SINE Alu 1 296 -15 1887 187 9 11 chr13 34045226 34045320 -67827849 + MER7A DNA MER2_type 1 94 -2944 2049 99 22 22 chr13 34045320 34045633 -67827536 - AluSq SINE Alu 0 313 1 1887 187 9 11 chr13 34045633 34045886 -67827283 + MER7A DNA MER2_type 94 345 -1 1963 184 36 69 chr13 34046034 34046130 -67827039 + L1MC5 LINE L1 6697 6795 -1194 1490 163 7 48 chr13 34046130 34046263 -67826906 + AluJb SINE Alu 1 138 -174 1939 54 0 65 chr13 34046263 34046542 -67826627 + AluY SINE Alu 40 300 -11 1490 163 7 48 chr13 34046542 34046702 -67826467 + AluJb SINE Alu 138 282 -30 186 43 0 0 chr13 34046710 34046733 -67826436 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1963 184 36 69 chr13 34046733 34047208 -67825961 + L1MC5 LINE L1 6802 7256 -733 1771 212 71 77 chr13 34047209 34047514 -67825655 + L1MC5 LINE L1 7182 7487 -474 221 0 35 0 chr13 34047514 34047543 -67825626 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 1771 212 71 77 chr13 34047543 34047982 -67825187 + L1MC5 LINE L1 7487 7922 -39 2035 111 6 35 chr13 34048007 34048322 -67824847 + AluSx SINE Alu 1 306 -6 567 123 18 18 chr13 34048327 34048441 -67824728 + GA-rich Low_complexity Low_complexity 4 117 0 417 194 140 0 chr13 34048798 34048891 -67824278 - MER91C DNA MER1_type 0 140 35 2266 78 0 3 chr13 34049038 34049333 -67823836 - AluSg SINE Alu -16 294 1 338 200 95 95 chr13 34049410 34049515 -67823654 - MLT1J2 LTR MaLR 0 450 346 226 265 0 0 chr13 34049638 34049687 -67823482 - MLT1I LTR MaLR -243 166 118 1991 201 19 17 chr13 34050204 34050617 -67822552 - MLT2D LTR ERVL 0 414 1 209 270 90 34 chr13 34052101 34052190 -67820979 + MER5A DNA MER1_type 65 158 -31 * 381 131 16 0 chr13 34052130 34052191 -67820978 - MER5A DNA MER1_type -86 103 42 206 349 58 0 chr13 34052567 34052653 -67820516 + MIR SINE MIR 52 142 -66 727 169 7 44 chr13 34052700 34052836 -67820333 - AluJo SINE Alu -176 136 6 21 0 0 0 chr13 34052842 34052863 -67820306 + AT_rich Low_complexity Low_complexity 1 21 0 202 310 0 0 chr13 34052867 34052938 -67820231 + MIR SINE MIR 143 213 -49 463 273 8 8 chr13 34053681 34053809 -67819360 + MIR SINE MIR 23 150 -112 1474 123 30 30 chr13 34054168 34054403 -67818766 + MER46A DNA MER2_type 2 236 0 853 89 9 0 chr13 34054409 34054521 -67818648 - AluSg/x SINE Alu -19 291 179 963 249 118 33 chr13 34054537 34054902 -67818267 + MLT1L LTR MaLR 194 589 -26 2394 78 10 3 chr13 34055697 34055993 -67817176 + AluSq SINE Alu 1 298 -15 493 287 46 69 chr13 34056158 34056461 -67816708 + MLT1I LTR MaLR 107 402 -7 317 175 30 24 chr13 34056466 34056557 -67816612 + MLT1F1 LTR MaLR 485 592 -3 409 255 87 91 chr13 34056564 34056862 -67816307 - MLT1K LTR MaLR -109 479 183 267 234 19 103 chr13 34056926 34057033 -67816136 - MLT1K LTR MaLR -62 526 429 877 255 64 10 chr13 34057283 34057520 -67815649 + MIR SINE MIR 16 262 0 2253 109 0 10 chr13 34057891 34058202 -67814967 - AluSg1 SINE Alu -1 308 1 2253 100 0 10 chr13 34059033 34059332 -67813837 - AluSx SINE Alu -16 296 1 2402 105 0 3 chr13 34059463 34059809 -67813360 - AluSx SINE Alu 0 345 1 190 347 11 0 chr13 34059810 34059905 -67813264 - MIR SINE MIR -114 148 53 675 176 59 98 chr13 34059959 34060065 -67813104 + MER3 DNA MER1_type 13 109 -100 1451 135 67 74 chr13 34060065 34060362 -67812807 - AluJo SINE Alu -17 295 1 675 176 59 98 chr13 34060362 34060459 -67812710 + MER3 DNA MER1_type 109 208 -1 322 200 31 0 chr13 34060406 34060471 -67812698 - MER3 DNA MER1_type -106 103 37 * 2277 104 0 0 chr13 34060597 34060894 -67812275 - AluSg1 SINE Alu -12 297 1 2034 110 0 0 chr13 34061098 34061361 -67811808 + AluSx SINE Alu 35 297 -15 2213 103 34 0 chr13 34061362 34061654 -67811515 + AluSq SINE Alu 2 303 -10 568 301 6 0 chr13 34062310 34062486 -67810683 + MIR SINE MIR 86 262 0 1069 131 6 6 chr13 34062536 34062712 -67810457 - L1PA10 LINE L1 -4 6164 5989 1135 133 0 0 chr13 34062715 34062914 -67810255 - AluSx SINE Alu 0 312 129 537 122 0 0 chr13 34062914 34062988 -67810181 - AluSx SINE Alu -230 82 9 2116 90 59 0 chr13 34063068 34063358 -67809811 - AluSc SINE Alu 0 309 3 296 347 33 20 chr13 34063440 34063590 -67809579 - L2 LINE L2 0 3313 3162 973 165 0 13 chr13 34063856 34064014 -67809155 - FRAM SINE Alu -10 156 1 318 333 93 13 chr13 34064310 34064460 -67808709 - MIR3 SINE MIR -28 180 19 21 95 0 0 chr13 34064491 34064554 -67808615 + AT_rich Low_complexity Low_complexity 1 63 0 207 139 0 0 chr13 34066086 34066122 -67807047 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 637 168 64 163 chr13 34066143 34066194 -67806975 - MLT1A1 LTR MaLR -17 348 294 2407 53 3 0 chr13 34066194 34066512 -67806657 - AluY SINE Alu 0 319 1 637 168 64 163 chr13 34066512 34066662 -67806507 - MLT1A1 LTR MaLR -71 294 171 227 194 0 0 chr13 34066660 34066696 -67806473 - MLT1A1 LTR MaLR -169 196 161 * 1001 184 0 0 chr13 34066724 34066882 -67806287 - FAM SINE Alu -14 171 14 767 217 6 6 chr13 34066885 34067042 -67806127 - MLT1A1 LTR MaLR -208 157 1 1575 96 5 18 chr13 34067639 34067859 -67805310 - AluSq SINE Alu -24 289 73 2457 63 7 3 chr13 34067859 34068158 -67805011 - AluY SINE Alu -10 301 1 652 93 0 0 chr13 34068158 34068244 -67804925 - AluSq SINE Alu -226 87 2 183 309 69 57 chr13 34068466 34068641 -67804528 - L2 LINE L2 -814 2500 2324 2156 115 3 32 chr13 34069335 34069648 -67803521 - AluSx SINE Alu -8 304 1 326 255 75 0 chr13 34069795 34069889 -67803280 + Charlie8 DNA MER1_type 88 188 -2229 180 0 0 0 chr13 34070026 34070046 -67803123 + (T)n Simple_repeat Simple_repeat 1 20 0 2279 99 3 10 chr13 34070118 34070420 -67802749 - AluSg SINE Alu -10 300 1 1945 70 62 37 chr13 34070597 34070904 -67802265 - AluSc SINE Alu 0 314 1 332 270 72 72 chr13 34071157 34071379 -67801790 - L2 LINE L2 -9 3304 3083 237 283 72 72 chr13 34072124 34072290 -67800879 + MLT1K LTR MaLR 413 578 -10 2205 106 17 3 chr13 34072702 34073003 -67800166 + AluSx SINE Alu 1 305 -7 2037 125 0 14 chr13 34073182 34073470 -67799699 + AluSx SINE Alu 1 284 -28 18665 106 5 51 chr13 34074448 34078170 -67794999 + L1PA14 LINE L1 2605 6143 -18 257 184 0 0 chr13 34078180 34078229 -67794940 + L1M LINE L1 5320 5368 -934 2021 131 3 10 chr13 34078231 34078528 -67794641 + AluSx SINE Alu 1 295 -17 2127 204 78 5 chr13 34078934 34079355 -67793814 + MER82 DNA MER2_type 202 653 0 671 141 8 41 chr13 34079481 34079602 -67793567 + FLAM_A SINE Alu 20 136 -6 309 346 56 26 chr13 34079602 34079836 -67793333 + L3b LINE CR1 1259 1499 -84 2121 132 7 0 chr13 34080290 34080600 -67792569 + AluSx SINE Alu 1 312 0 258 307 0 0 chr13 34081281 34081356 -67791813 + HsTC2 DNA Tc2 44 118 -1780 * 294 178 0 0 chr13 34081354 34081399 -67791770 + HsTC2 DNA Tc2 1242 1286 -612 185 376 0 0 chr13 34082678 34082787 -67790382 - MIR SINE MIR -134 128 20 837 222 64 5 chr13 34083324 34083527 -67789642 + MER20 DNA MER1_type 1 215 -4 565 257 47 34 chr13 34083605 34083806 -67789363 - MIR SINE MIR -14 248 44 267 193 0 0 chr13 34083955 34084043 -67789126 + (TG)n Simple_repeat Simple_repeat 1 88 0 3626 241 69 35 chr13 34084923 34087019 -67786150 + L1M4 LINE L1 795 3076 -3568 683 217 71 25 chr13 34088391 34088631 -67784538 - L1ME4a LINE L1 -7 6114 5864 356 279 88 7 chr13 34088696 34088832 -67784337 - MIR SINE MIR -12 250 104 1706 163 30 30 chr13 34089297 34089665 -67783504 - L1MB8 LINE L1 -6 6172 5805 188 302 23 0 chr13 34089670 34089756 -67783413 + MIR SINE MIR 166 253 -9 1694 141 0 15 chr13 34090300 34090563 -67782606 + AluJo SINE Alu 38 296 -16 661 211 144 107 chr13 34090802 34091148 -67782021 - MLT1H1 LTR MaLR -7 548 190 180 322 0 44 chr13 34092817 34092907 -67780262 - L3 LINE CR1 -74 1503 1418 391 293 153 0 chr13 34093152 34093302 -67779867 - MIR SINE MIR -70 192 20 2049 152 0 3 chr13 34093327 34093629 -67779540 - AluJb SINE Alu -10 302 2 248 276 58 23 chr13 34093797 34093884 -67779285 + MLT1H1 LTR MaLR 100 189 -366 251 235 44 96 chr13 34093903 34094039 -67779130 + MLT1H LTR MaLR 421 549 0 5250 175 111 13 chr13 34094661 34094740 -67778429 + Charlie1a DNA MER1_type 1 71 -2690 1819 171 0 16 chr13 34094740 34095045 -67778124 + AluJb SINE Alu 1 300 -12 5250 175 111 13 chr13 34095045 34095104 -67778065 + Charlie1a DNA MER1_type 71 123 -2638 2314 112 3 0 chr13 34095104 34095407 -67777762 - AluSg SINE Alu -6 304 1 5250 175 111 13 chr13 34095407 34096329 -67776840 + Charlie1a DNA MER1_type 123 1166 -289 1476 194 17 17 chr13 34097019 34097318 -67775851 + AluJo SINE Alu 1 299 -13 778 226 30 39 chr13 34097390 34097624 -67775545 - MIR SINE MIR -30 232 1 1361 128 56 7 chr13 34098106 34098394 -67774775 + Charlie1a DNA MER1_type 1154 1455 0 443 236 86 93 chr13 34099147 34099427 -67773742 - L1ME4a LINE L1 -248 5873 5596 1628 194 56 0 chr13 34099606 34099925 -67773244 - MER58B DNA MER1_type -1 340 4 373 310 58 26 chr13 34100467 34100693 -67772476 - L3 LINE CR1 -721 856 624 1808 138 48 17 chr13 34101009 34101298 -67771871 - AluJb SINE Alu -14 298 1 186 167 0 0 chr13 34101511 34101547 -67771622 + GA-rich Low_complexity Low_complexity 2 37 0 395 241 37 9 chr13 34101640 34101748 -67771421 - L2 LINE L2 -23 3290 3180 317 294 139 28 chr13 34101955 34102896 -67770273 - L2 LINE L2 -495 2819 1704 240 293 24 0 chr13 34103849 34103931 -67769238 + L2 LINE L2 2228 2311 -1003 423 242 79 53 chr13 34104124 34104215 -67768954 + MIR SINE MIR 48 135 -127 1801 175 91 26 chr13 34104215 34104633 -67768536 + MER65A LTR ERV1 1 445 0 423 242 79 53 chr13 34104633 34104731 -67768438 + MIR SINE MIR 135 242 -20 454 157 0 56 chr13 34106424 34106513 -67766656 - FLAM SINE Alu -15 128 45 277 189 0 0 chr13 34106540 34106593 -67766576 - Alu SINE Alu -252 56 4 318 276 71 31 chr13 34106894 34107021 -67766148 + MIR SINE MIR 15 146 -116 4159 116 42 11 chr13 34110557 34111279 -67761890 + Tigger3b DNA MER2_type 1 744 -487 366 288 178 52 chr13 34111421 34111730 -67761439 - L3b LINE CR1 -131 1452 1105 558 180 168 12 chr13 34112434 34112595 -67760574 + MER53 DNA DNA 4 189 0 2284 110 0 16 chr13 34112653 34112970 -67760199 + AluSx SINE Alu 1 312 0 305 264 27 55 chr13 34113013 34113123 -67760046 - L2 LINE L2 -7 3306 3200 214 301 78 10 chr13 34113251 34113354 -67759815 + MIR SINE MIR 81 190 -72 2247 103 0 0 chr13 34114130 34114422 -67758747 + AluSp SINE Alu 1 292 -21 21 0 0 0 chr13 34114425 34114446 -67758723 + AT_rich Low_complexity Low_complexity 1 21 0 249 338 142 0 chr13 34114912 34115060 -67758109 - MIR3 SINE MIR -36 172 4 23 0 0 0 chr13 34115785 34115808 -67757361 + AT_rich Low_complexity Low_complexity 1 23 0 1985 152 0 0 chr13 34115929 34116225 -67756944 - AluSx SINE Alu -14 298 3 592 314 105 15 chr13 34116405 34116510 -67756659 - L1ME LINE L1 -319 5802 5708 709 177 125 31 chr13 34116510 34116702 -67756467 - MER6B DNA MER2_type 0 210 1 592 314 105 15 chr13 34116702 34117064 -67756105 - L1ME LINE L1 -413 5708 5293 584 304 73 30 chr13 34117086 34117180 -67755989 - L1ME LINE L1 -927 5219 5130 1501 196 28 14 chr13 34117180 34117466 -67755703 + AluJb SINE Alu 1 290 -22 584 304 73 30 chr13 34117466 34118002 -67755167 - L1ME LINE L1 -1016 5130 4562 567 222 9 0 chr13 34118047 34118155 -67755014 + MER21B LTR ERV1 329 437 -426 477 0 0 0 chr13 34118168 34118221 -67754948 + (TA)n Simple_repeat Simple_repeat 1 53 0 3501 135 27 15 chr13 34118392 34118994 -67754175 + LTR38B LTR ERV1 1 609 -1 1802 152 7 11 chr13 34118994 34119270 -67753899 + AluJo SINE Alu 27 301 -11 222 61 61 0 chr13 34119291 34119340 -67753829 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 501 312 38 38 chr13 34119383 34119646 -67753523 + L1ME4a LINE L1 5630 5892 -229 2094 120 3 10 chr13 34119807 34120115 -67753054 + AluSg SINE Alu 1 306 -4 24 0 0 0 chr13 34120163 34120187 -67752982 + AT_rich Low_complexity Low_complexity 1 24 0 469 344 134 30 chr13 34121866 34122184 -67750985 + L2 LINE L2 1925 2208 -1106 2523 74 0 3 chr13 34122184 34122495 -67750674 - AluY SINE Alu -1 310 1 469 344 134 30 chr13 34122495 34122883 -67750286 + L2 LINE L2 2208 2705 -609 857 214 105 68 chr13 34123381 34123792 -67749377 - MER67C LTR ERV1 -139 571 146 397 284 45 30 chr13 34126293 34126356 -67746813 + L2 LINE L2 3008 3069 -244 351 0 0 0 chr13 34126356 34126395 -67746774 + (CA)n Simple_repeat Simple_repeat 1 39 0 397 284 45 30 chr13 34126395 34126532 -67746637 + L2 LINE L2 3069 3211 -102 4443 21 0 0 chr13 34126769 34127284 -67745885 + L1PA3 LINE L1 5641 6155 0 2532 75 0 0 chr13 34127745 34128050 -67745119 - AluSq SINE Alu -8 305 1 195 265 20 0 chr13 34128468 34128517 -67744652 - MIR SINE MIR -110 152 103 1953 104 0 0 chr13 34129863 34130122 -67743047 - AluSg1 SINE Alu -2 307 49 1927 117 31 9 chr13 34130175 34130501 -67742668 + L1MA4 LINE L1 5963 6295 -5 32 0 0 0 chr13 34130646 34130678 -67742491 + AT_rich Low_complexity Low_complexity 1 32 0 207 279 16 16 chr13 34131173 34131234 -67741935 - L2 LINE L2 -32 3240 3180 1283 105 42 155 chr13 34131330 34131691 -67741478 + MER33 DNA MER1_type 5 324 0 465 226 250 43 chr13 34131882 34132090 -67741079 - MIR SINE MIR -2 260 10 446 124 58 0 chr13 34132178 34132299 -67740870 + GA-rich Low_complexity Low_complexity 2 129 0 2093 71 4 8 chr13 34133141 34133408 -67739761 - AluY SINE Alu -12 299 34 23 54 0 0 chr13 34133790 34133827 -67739342 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr13 34133910 34133940 -67739229 + AT_rich Low_complexity Low_complexity 1 30 0 388 61 0 30 chr13 34134678 34134744 -67738425 + (TA)n Simple_repeat Simple_repeat 2 65 0 224 256 26 13 chr13 34134845 34134923 -67738246 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 428 282 90 27 chr13 34135268 34135456 -67737713 - MIR SINE MIR -12 250 51 207 182 0 0 chr13 34136475 34136508 -67736661 + polypyrimidine Low_complexity Low_complexity 2 34 0 1843 163 0 3 chr13 34136904 34137192 -67735977 + AluSx SINE Alu 1 287 -25 22 0 0 0 chr13 34137913 34137935 -67735234 + AT_rich Low_complexity Low_complexity 1 22 0 228 67 0 0 chr13 34138071 34138101 -67735068 + (TA)n Simple_repeat Simple_repeat 2 31 0 406 305 66 73 chr13 34138144 34138583 -67734586 + MARNA DNA Mariner 125 560 -26 646 169 21 42 chr13 34138622 34138764 -67734405 + L1MB2 LINE L1 5953 6091 -80 233 245 75 0 chr13 34139651 34139704 -67733465 - L2 LINE L2 -4 3309 3253 327 25 0 0 chr13 34139882 34139922 -67733247 + (TG)n Simple_repeat Simple_repeat 1 40 0 1603 290 57 46 chr13 34139958 34140737 -67732432 - L2 LINE L2 -340 2974 2188 717 163 57 0 chr13 34141095 34141218 -67731951 + AluJb SINE Alu 5 134 -178 694 183 9 0 chr13 34141230 34141345 -67731824 + AluJb SINE Alu 103 218 -94 185 0 0 39 chr13 34141361 34141387 -67731782 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 325 284 49 10 chr13 34142137 34142239 -67730930 + L2 LINE L2 2948 3053 -219 241 337 179 0 chr13 34143163 34143258 -67729911 + L2 LINE L2 3158 3269 -3 1848 178 0 20 chr13 34143713 34144016 -67729153 + AluJo SINE Alu 1 297 -15 843 204 85 27 chr13 34144029 34144289 -67728880 + L1MC5 LINE L1 6633 6907 -1054 222 174 0 0 chr13 34144373 34144419 -67728750 + (TA)n Simple_repeat Simple_repeat 1 46 0 479 263 21 44 chr13 34144477 34144746 -67728423 + L1MC5 LINE L1 7005 7256 -733 23 33 0 0 chr13 34144878 34144908 -67728261 + AT_rich Low_complexity Low_complexity 1 30 0 195 391 0 0 chr13 34144993 34145062 -67728107 - L3 LINE CR1 -1468 109 41 2094 94 52 3 chr13 34145402 34145688 -67727481 + AluSg SINE Alu 1 300 -10 770 262 57 13 chr13 34145804 34146033 -67727136 + MIR SINE MIR 12 250 -12 316 260 71 39 chr13 34146104 34146258 -67726911 + L1ME4a LINE L1 5962 6120 -1 274 309 59 33 chr13 34146394 34146588 -67726581 + L2 LINE L2 2724 2919 -353 238 246 45 36 chr13 34146677 34146787 -67726382 + MLT1J2 LTR MaLR 338 448 -2 547 207 138 69 chr13 34146818 34147198 -67725971 + HAL1 LINE L1 2027 2444 -63 2255 120 3 0 chr13 34147198 34147507 -67725662 + AluSx SINE Alu 1 310 -2 547 207 138 69 chr13 34147507 34147575 -67725594 + HAL1 LINE L1 2444 2506 -1 297 120 0 0 chr13 34148473 34148523 -67724646 + L1MB8 LINE L1 6108 6157 -21 2198 148 8 13 chr13 34149229 34149606 -67723563 + THE1C LTR MaLR 1 375 0 190 347 159 11 chr13 34149633 34149809 -67723360 + L2 LINE L2 2578 2779 -535 2325 112 0 0 chr13 34149817 34150213 -67722956 + AluSg SINE Alu 1 396 0 424 169 60 12 chr13 34150520 34150603 -67722566 - MIR SINE MIR -10 252 166 21 112 0 0 chr13 34150659 34150757 -67722412 + AT_rich Low_complexity Low_complexity 1 98 0 9274 113 16 1 chr13 34150801 34152328 -67720841 + L1M1 LINE L1 2060 3609 -3956 953 160 0 0 chr13 34152328 34152472 -67720697 + AluJb SINE Alu 169 312 0 1681 174 0 30 chr13 34152472 34152845 -67720324 + L1M1 LINE L1 3597 3958 -3607 454 204 92 0 chr13 34152846 34152944 -67720225 + L1M1 LINE L1 5484 5590 -1975 4743 140 14 11 chr13 34152995 34154985 -67718184 + L1MA2 LINE L1 4065 6304 0 1852 92 0 0 chr13 34155030 34155269 -67717900 + AluSq SINE Alu 67 305 -8 1831 149 47 0 chr13 34155354 34155629 -67717540 + AluSx SINE Alu 2 289 -23 773 140 27 80 chr13 34155659 34155809 -67717360 + FLAM_C SINE Alu 2 143 0 2221 114 34 3 chr13 34155813 34156171 -67716998 + L1MC/D LINE L1 5317 5685 -557 1924 142 0 45 chr13 34156254 34156563 -67716606 + AluJb SINE Alu 1 295 -17 185 176 0 0 chr13 34157343 34157377 -67715792 + L2 LINE L2 3280 3313 0 1927 213 196 22 chr13 34157513 34158210 -67714959 + L1ME1 LINE L1 5188 6077 -89 2357 102 0 0 chr13 34158210 34158505 -67714664 - AluSg SINE Alu -15 295 1 1927 213 196 22 chr13 34158505 34158605 -67714564 + L1ME1 LINE L1 6077 6158 -8 33 0 0 0 chr13 34158874 34158907 -67714262 + AT_rich Low_complexity Low_complexity 1 33 0 2033 121 57 7 chr13 34159794 34160092 -67713077 - AluSq SINE Alu 0 313 1 1832 172 20 3 chr13 34160208 34160511 -67712658 - AluJb SINE Alu -4 308 1 2405 57 6 25 chr13 34161274 34161591 -67711578 - AluY SINE Alu 0 311 1 277 297 10 0 chr13 34162084 34162185 -67710984 - MARNA DNA Mariner -51 535 434 195 42 0 0 chr13 34162689 34162713 -67710456 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chr13 34162938 34162968 -67710201 + AT_rich Low_complexity Low_complexity 1 30 0 410 241 178 29 chr13 34163795 34163969 -67709200 - MIR SINE MIR -58 204 5 2389 45 0 17 chr13 34164142 34164433 -67708736 + L1PA5 LINE L1 5869 6154 0 713 249 104 10 chr13 34165150 34165351 -67707818 + MIR SINE MIR 43 262 0 270 0 0 0 chr13 34165511 34165541 -67707628 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 734 144 68 8 chr13 34165890 34166008 -67707161 - LTR9B LTR ERV1 -432 212 88 5562 82 42 11 chr13 34166008 34166838 -67706331 + SVA Other Other 13 868 -518 1644 168 7 7 chr13 34167060 34167346 -67705823 - AluJo SINE Alu -26 286 1 2878 146 38 8 chr13 34167346 34167825 -67705344 + Tigger3(Golem) DNA MER2_type 2537 3029 0 302 246 19 103 chr13 34168320 34168352 -67704817 - MER5A DNA MER1_type -33 145 112 2607 54 0 0 chr13 34168352 34168650 -67704519 + AluY SINE Alu 1 298 -13 302 246 19 103 chr13 34168650 34168790 -67704379 - MER5A DNA MER1_type -66 112 1 208 286 104 26 chr13 34169344 34169421 -67703748 + MIR SINE MIR 8 90 -172 310 279 105 17 chr13 34169695 34169867 -67703302 - MIR SINE MIR -48 214 28 * 768 268 16 49 chr13 34169812 34170055 -67703114 + MIR SINE MIR 6 240 -22 3009 208 67 17 chr13 34170597 34170758 -67702411 + L1MB5 LINE L1 2880 3032 -3114 2264 113 3 0 chr13 34170758 34171067 -67702102 + AluSg SINE Alu 1 310 0 3009 208 67 17 chr13 34171067 34171728 -67701441 + L1MB5 LINE L1 3032 3743 -2403 1692 172 23 36 chr13 34172559 34172867 -67700302 + AluJo SINE Alu 1 304 -8 180 203 51 51 chr13 34173385 34173444 -67699725 - MER5B DNA MER1_type -4 174 116 245 292 44 31 chr13 34173536 34173646 -67699523 + MER5A DNA MER1_type 65 177 -1 192 306 82 35 chr13 34174212 34174297 -67698872 + L2 LINE L2 3137 3225 -47 1098 189 141 42 chr13 34174340 34174403 -67698766 - MER46C DNA MER2_type -2 336 281 1695 161 24 7 chr13 34174403 34174694 -67698475 - AluJb SINE Alu -12 300 5 1098 189 141 42 chr13 34174694 34174936 -67698233 - MER46C DNA MER2_type -57 281 1 290 210 12 37 chr13 34174955 34175036 -67698133 - MIR SINE MIR 0 262 184 505 128 26 0 chr13 34175312 34175390 -67697779 + AluJ/FLAM SINE Alu 1 80 -232 216 297 10 79 chr13 34175655 34175756 -67697413 - MER5A DNA MER1_type 0 189 96 27 0 0 0 chr13 34175786 34175813 -67697356 + AT_rich Low_complexity Low_complexity 1 27 0 1603 157 122 29 chr13 34176361 34176706 -67696463 + MLT1C LTR MaLR 91 467 0 538 157 39 10 chr13 34176711 34176813 -67696356 + L1MB5 LINE L1 3860 3964 -2182 1942 163 0 0 chr13 34176817 34177124 -67696045 + AluJb SINE Alu 1 307 -5 1903 151 41 60 chr13 34177133 34177748 -67695421 + L1MB5 LINE L1 4918 5528 -652 1548 181 53 20 chr13 34177749 34178048 -67695121 + AluJb SINE Alu 1 309 -3 548 80 5 120 chr13 34178057 34178257 -67694912 + (GGAAA)n Simple_repeat Simple_repeat 3 179 0 1563 150 68 4 chr13 34178260 34178540 -67694629 + L1MB5 LINE L1 5535 5832 -342 1399 119 55 0 chr13 34178540 34178741 -67694428 + AluSq SINE Alu 1 212 -101 1695 117 0 79 chr13 34178913 34179204 -67693965 - AluSg SINE Alu -42 268 1 589 196 29 36 chr13 34179451 34179589 -67693580 + L2 LINE L2 3132 3268 -4 2013 103 0 39 chr13 34180320 34180631 -67692538 + AluJo SINE Alu 1 299 -13 216 0 0 0 chr13 34180778 34180802 -67692367 + (T)n Simple_repeat Simple_repeat 1 24 0 559 233 120 0 chr13 34181167 34181317 -67691852 - MER5A DNA MER1_type -2 187 20 2003 135 0 47 chr13 34181318 34181636 -67691533 - AluSx SINE Alu -9 303 1 247 367 79 22 chr13 34181652 34181791 -67691378 + L2 LINE L2 3119 3265 -7 * 559 162 110 37 chr13 34181760 34181844 -67691325 - L2 LINE L2 0 3313 3214 198 0 0 0 chr13 34181844 34181866 -67691303 + (CA)n Simple_repeat Simple_repeat 2 23 0 559 162 110 37 chr13 34181866 34181917 -67691252 - L2 LINE L2 -99 3214 3168 1761 156 19 36 chr13 34183920 34184228 -67688941 + AluJo SINE Alu 1 303 -9 748 175 0 8 chr13 34184558 34184678 -67688491 - FLAM_C SINE Alu -12 131 13 463 257 0 0 chr13 34184690 34184795 -67688374 - L1MA10 LINE L1 -64 6270 6166 1728 176 3 16 chr13 34185315 34185628 -67687541 - AluJo SINE Alu -3 309 1 688 262 65 31 chr13 34185657 34185947 -67687222 - L1ME3A LINE L1 -232 5938 5639 2335 104 3 0 chr13 34185964 34186271 -67686898 + AluSx SINE Alu 1 308 -4 308 195 0 0 chr13 34186276 34186357 -67686812 - L1ME3A LINE L1 -741 5429 5372 1148 182 29 10 chr13 34186823 34187032 -67686137 + L1MB7 LINE L1 5895 6107 -77 351 241 45 38 chr13 34187126 34187259 -67685910 - L1ME3A LINE L1 -36 6134 6001 314 295 58 64 chr13 34187310 34187401 -67685768 - L1ME3A LINE L1 -875 5271 5180 1906 176 0 3 chr13 34187401 34187702 -67685467 - AluJb SINE Alu -12 300 1 314 295 58 64 chr13 34187702 34187783 -67685386 - L1ME3A LINE L1 -966 5180 5100 474 75 0 0 chr13 34187858 34187925 -67685244 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2132 137 0 0 chr13 34188184 34188483 -67684686 - AluSx SINE Alu -13 299 1 2231 123 0 16 chr13 34189278 34189595 -67683574 + AluSx SINE Alu 1 312 0 246 276 61 51 chr13 34189711 34189809 -67683360 - MIR SINE MIR -64 144 46 2437 78 10 0 chr13 34189917 34190225 -67682944 + AluY SINE Alu 1 311 0 189 74 0 0 chr13 34190298 34190325 -67682844 + (CATAT)n Simple_repeat Simple_repeat 4 30 0 414 288 59 12 chr13 34190881 34191051 -67682118 + L1ME4a LINE L1 5681 5858 -263 239 220 0 0 chr13 34191098 34191157 -67682012 + L1ME4a LINE L1 6060 6118 -3 26 30 0 0 chr13 34192172 34192205 -67680964 + AT_rich Low_complexity Low_complexity 1 33 0 1261 114 116 32 chr13 34192440 34192700 -67680469 - MER1B DNA MER1_type -1 338 97 451 256 118 36 chr13 34192729 34192973 -67680196 + L1MC4 LINE L1 7688 7994 -1 829 211 58 0 chr13 34192973 34193144 -67680025 + AluJb SINE Alu 127 307 -5 1856 88 7 81 chr13 34193275 34193611 -67679558 + AluSq SINE Alu 1 313 0 2210 132 31 0 chr13 34193705 34194032 -67679137 + MER1B DNA MER1_type 1 337 0 2203 78 0 3 chr13 34194258 34194586 -67678583 + AluSx SINE Alu 1 327 0 209 273 0 55 chr13 34195317 34195372 -67677797 + L2 LINE L2 3219 3270 -2 348 332 64 25 chr13 34195872 34196074 -67677095 + L2 LINE L2 2851 3060 -212 182 346 0 19 chr13 34196154 34196206 -67676963 + L2 LINE L2 3136 3186 -86 586 179 21 132 chr13 34196332 34196522 -67676647 - MER7A DNA MER2_type -179 167 1 205 333 77 43 chr13 34197341 34197458 -67675711 + L2 LINE L2 3142 3262 -10 207 0 0 0 chr13 34197932 34197955 -67675214 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1321 176 5 0 chr13 34197979 34198200 -67674969 - AluJb SINE Alu -90 222 1 627 277 55 30 chr13 34198207 34198409 -67674760 - MIR SINE MIR -54 208 2 362 271 42 25 chr13 34198517 34198635 -67674534 - L2 LINE L2 -26 3287 3168 248 335 13 83 chr13 34198984 34199122 -67674047 + L2 LINE L2 2621 2767 -547 754 159 273 49 chr13 34199122 34199323 -67673846 + MER33 DNA MER1_type 2 157 -2428 2055 118 0 0 chr13 34199323 34199593 -67673576 + AluSc SINE Alu 1 270 -39 630 0 0 0 chr13 34199593 34199663 -67673506 + (TC)n Simple_repeat Simple_repeat 2 71 0 342 0 0 0 chr13 34199662 34199700 -67673469 + (TA)n Simple_repeat Simple_repeat 1 38 0 754 159 273 49 chr13 34199663 34199761 -67673408 + MER33 DNA MER1_type 156 324 0 248 335 13 83 chr13 34199761 34199852 -67673317 + L2 LINE L2 2767 2834 -480 22 35 0 0 chr13 34199966 34199995 -67673174 + AT_rich Low_complexity Low_complexity 1 29 0 2066 153 0 0 chr13 34200004 34200305 -67672864 + AluSx SINE Alu 1 301 -11 304 277 161 9 chr13 34200516 34200628 -67672541 + L2 LINE L2 3141 3269 -3 1980 62 4 35 chr13 34200706 34200963 -67672206 - AluY SINE Alu -17 294 46 1772 98 0 0 chr13 34202517 34202742 -67670427 + AluSg/x SINE Alu 84 308 -2 417 273 48 48 chr13 34202760 34202925 -67670244 - L2 LINE L2 -19 3294 3130 2114 66 37 0 chr13 34203873 34204145 -67669024 + AluY SINE Alu 1 282 -29 231 36 0 0 chr13 34204145 34204173 -67668996 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 321 120 0 0 chr13 34204173 34204223 -67668946 + Alu SINE Alu 250 299 -1 280 306 65 9 chr13 34205244 34205352 -67667817 + MIR SINE MIR 34 147 -61 1624 206 14 0 chr13 34205956 34206252 -67666917 + AluJo SINE Alu 5 304 -8 1105 163 0 0 chr13 34206330 34206496 -67666673 + FRAM SINE Alu 1 165 -11 555 290 125 17 chr13 34206603 34206900 -67666269 - MLT1J2 LTR MaLR 0 450 122 6882 53 2 32 chr13 34208587 34209504 -67663665 + SVA Other Other 497 1386 0 31 26 0 0 chr13 34209547 34209585 -67663584 + AT_rich Low_complexity Low_complexity 1 38 0 2273 95 7 0 chr13 34209629 34209923 -67663246 - AluY SINE Alu -15 296 1 1220 130 17 35 chr13 34210230 34210460 -67662709 + L1MB7 LINE L1 5940 6165 -19 22 0 0 0 chr13 34210656 34210678 -67662491 + AT_rich Low_complexity Low_complexity 1 22 0 2178 125 0 0 chr13 34210707 34211012 -67662157 - AluSq SINE Alu -8 305 1 260 230 40 0 chr13 34211183 34211257 -67661912 - L1ME3A LINE L1 -88 6082 6006 235 139 0 0 chr13 34211311 34211347 -67661822 - MIR SINE MIR -110 152 117 1285 300 42 9 chr13 34211350 34211894 -67661275 - L1ME3A LINE L1 -208 5962 5401 25 51 0 0 chr13 34212877 34212916 -67660253 + AT_rich Low_complexity Low_complexity 1 39 0 14401 115 43 40 chr13 34213343 34213512 -67659657 - Tigger1 DNA MER2_type -1 2417 2250 768 41 10 0 chr13 34213512 34213609 -67659560 + L1PA3 LINE L1 6056 6153 -2 14401 115 43 40 chr13 34213609 34215847 -67657322 - Tigger1 DNA MER2_type -168 2250 1 435 333 37 7 chr13 34216129 34216264 -67656905 - L2 LINE L2 0 3272 3134 199 369 12 24 chr13 34216843 34216927 -67656242 + MIR SINE MIR 69 151 -57 275 348 189 0 chr13 34217714 34217878 -67655291 - L2 LINE L2 0 3272 3078 1814 150 19 0 chr13 34218835 34219142 -67654027 + L1M2 LINE L1 5473 5785 -506 2038 130 3 0 chr13 34219142 34219434 -67653735 + AluSx SINE Alu 1 293 -19 378 318 7 7 chr13 34219499 34219650 -67653519 - L1ME LINE L1 -578 5584 5434 1187 168 5 0 chr13 34219650 34219835 -67653334 - AluJb SINE Alu -56 256 71 795 176 0 0 chr13 34219845 34219970 -67653199 - FLAM_C SINE Alu -8 125 1 813 181 27 13 chr13 34220045 34220194 -67652975 - FRAM SINE Alu -25 151 1 25 0 0 0 chr13 34220371 34220396 -67652773 + AT_rich Low_complexity Low_complexity 1 25 0 475 261 73 105 chr13 34220414 34221069 -67652100 + HAL1 LINE L1 999 1632 -875 367 264 123 75 chr13 34221526 34221731 -67651438 + L1ME4a LINE L1 2104 2329 -4067 216 0 0 0 chr13 34221731 34221755 -67651414 + (CA)n Simple_repeat Simple_repeat 1 24 0 367 264 123 75 chr13 34221755 34221841 -67651328 + L1ME4a LINE L1 2329 2409 -3987 2098 91 0 18 chr13 34222148 34222454 -67650715 + AluSg SINE Alu 9 309 0 349 337 183 5 chr13 34222772 34223143 -67650026 + L1ME4a LINE L1 4108 4544 -1671 254 247 146 19 chr13 34223249 34223407 -67649762 + HAL1b LINE L1 1164 1341 -7 303 284 234 12 chr13 34223489 34223746 -67649423 + L1ME4a LINE L1 4588 4901 -1314 22 0 0 0 chr13 34223890 34223912 -67649257 + AT_rich Low_complexity Low_complexity 1 22 0 595 245 132 34 chr13 34224195 34224460 -67648709 + L1ME4a LINE L1 5583 5873 -317 457 307 13 0 chr13 34224500 34224650 -67648519 + MER104 DNA Tc2 28 179 -1 322 225 23 54 chr13 34224797 34224926 -67648243 + L1ME4a LINE L1 6061 6185 -5 2358 89 7 0 chr13 34225012 34225315 -67647854 - AluSg SINE Alu -5 305 1 294 150 0 0 chr13 34225766 34225806 -67647363 + Alu SINE Alu 1 40 -263 653 94 0 31 chr13 34225806 34225902 -67647267 + AluJb SINE Alu 208 300 -12 2257 100 3 0 chr13 34226210 34226509 -67646660 + AluSx SINE Alu 1 300 -12 354 265 6 0 chr13 34226630 34226735 -67646434 + L1ME2 LINE L1 6054 6166 0 188 268 0 0 chr13 34228260 34228301 -67644868 - L2 LINE L2 -4 3309 3269 260 262 16 0 chr13 34228942 34229003 -67644166 - L2 LINE L2 -6 3307 3246 339 44 0 0 chr13 34230217 34230262 -67642907 + (CA)n Simple_repeat Simple_repeat 2 46 0 2020 230 27 6 chr13 34232957 34233470 -67639699 + L1MEc LINE L1 859 1382 -5339 475 143 13 0 chr13 34233473 34233550 -67639619 + LTR54 LTR ERV1 404 481 -29 244 313 6 32 chr13 34233562 34233746 -67639423 + L1MEc LINE L1 1322 1500 -5040 8595 122 24 39 chr13 34233788 34235268 -67637901 + L1M1 LINE L1 1587 3044 -4521 354 147 9 4 chr13 34235276 34235496 -67637673 + AluJo SINE Alu 1 300 0 434 136 12 0 chr13 34235498 34235579 -67637590 + GA-rich Low_complexity Low_complexity 3 84 0 2961 117 30 36 chr13 34235579 34235953 -67637216 + L1MA3 LINE L1 5780 6152 -153 2302 84 0 42 chr13 34235953 34236263 -67636906 - AluY SINE Alu -14 297 1 2961 117 30 36 chr13 34236263 34236416 -67636753 + L1MA3 LINE L1 6152 6304 -1 301 368 57 24 chr13 34236472 34236681 -67636488 - L1MC4a LINE L1 -1223 6585 6370 36 87 0 0 chr13 34237411 34237503 -67635666 + AT_rich Low_complexity Low_complexity 1 92 0 884 111 0 15 chr13 34237527 34237662 -67635507 + FLAM_C SINE Alu 1 133 0 190 357 142 37 chr13 34237959 34238335 -67634834 - L2 LINE L2 -790 2524 2084 1592 165 36 25 chr13 34238335 34238614 -67634555 + AluJb SINE Alu 1 282 -30 190 357 142 37 chr13 34238614 34238722 -67634447 - L2 LINE L2 -1230 2084 1989 778 127 22 30 chr13 34239576 34239710 -67633459 + FLAM_C SINE Alu 1 133 0 1978 154 7 3 chr13 34240910 34241216 -67631953 + AluSx SINE Alu 1 307 -5 2434 150 65 14 chr13 34241463 34241896 -67631273 + LTR32 LTR ERVL 15 469 -2 318 52 0 103 chr13 34242139 34242197 -67630972 - MADE1 DNA Mariner -28 52 1 2032 156 0 29 chr13 34242423 34242770 -67630399 - MER1B DNA MER1_type 0 337 1 261 0 0 0 chr13 34242889 34242918 -67630251 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 454 230 119 72 chr13 34244234 34244621 -67628548 + L1ME4a LINE L1 5694 6098 -23 2009 135 0 22 chr13 34244696 34245014 -67628155 + AluJb SINE Alu 2 312 0 2230 107 0 20 chr13 34245018 34245318 -67627851 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr13 34245318 34245342 -67627827 + AT_rich Low_complexity Low_complexity 1 24 0 652 217 8 0 chr13 34245497 34245617 -67627552 + L2 LINE L2 3189 3309 -4 24 0 0 0 chr13 34245624 34245648 -67627521 + AT_rich Low_complexity Low_complexity 1 24 0 719 281 41 8 chr13 34246073 34246315 -67626854 + MER112 DNA MER1_type 6 255 -5 1064 224 54 12 chr13 34246370 34246611 -67626558 + MIR SINE MIR 12 262 0 467 234 43 14 chr13 34246970 34247111 -67626058 - L1MB7 LINE L1 0 6184 6040 3413 172 49 14 chr13 34247649 34248342 -67624827 + L1MB8 LINE L1 5452 6168 -10 1912 136 30 7 chr13 34248349 34248644 -67624525 - AluSx SINE Alu -10 302 1 2173 96 3 0 chr13 34248759 34249041 -67624128 - AluSx SINE Alu -19 293 11 1247 182 0 22 chr13 34249163 34249388 -67623781 + AluJb SINE Alu 85 304 -8 392 242 36 129 chr13 34250196 34250390 -67622779 + MLT1J LTR MaLR 1 176 -335 261 196 71 0 chr13 34250398 34250454 -67622715 + L1MDa LINE L1 40 99 -6441 3290 202 63 96 chr13 34250781 34251876 -67621293 + L1MDa LINE L1 89 1147 -5393 2019 141 3 3 chr13 34252074 34252372 -67620797 + AluSx SINE Alu 1 298 -14 670 175 18 0 chr13 34252401 34252515 -67620654 - FLAM_A SINE Alu -11 131 16 812 236 39 0 chr13 34252912 34253094 -67620075 - MER5A DNA MER1_type 0 189 1 764 125 15 29 chr13 34253219 34253355 -67619814 + AluJb SINE Alu 1 134 -178 194 217 87 0 chr13 34253494 34253540 -67619629 - L2 LINE L2 0 3313 3264 3465 154 119 14 chr13 34253780 34254501 -67618668 + L1MC3 LINE L1 6987 7783 -2 404 138 0 0 chr13 34255361 34255419 -67617750 + MER58 DNA MER1_type 2363 2420 0 453 297 46 15 chr13 34255741 34255936 -67617233 - MLT1A1-int LTR MaLR -478 893 693 270 130 0 0 chr13 34256167 34256213 -67616956 + LTR49 LTR ERV1 2 47 -548 * 704 180 86 54 chr13 34256200 34256213 -67616956 + MER34B LTR ERV1 337 348 -217 2376 65 3 0 chr13 34256213 34256504 -67616665 - AluY SINE Alu -19 292 1 704 180 86 54 chr13 34256504 34256712 -67616457 + MER34B LTR ERV1 348 565 0 503 313 67 17 chr13 34256739 34257036 -67616133 - MLT1A1-int LTR MaLR -765 606 295 1725 165 4 0 chr13 34257211 34257477 -67615692 + AluJb SINE Alu 25 291 -21 2024 177 11 3 chr13 34257491 34257842 -67615327 - MLT1A1 LTR MaLR 0 365 12 1278 222 214 39 chr13 34257876 34258335 -67614834 - MLT1F LTR MaLR -3 539 1 193 247 0 136 chr13 34258846 34258927 -67614242 - MIR SINE MIR -73 189 120 1269 219 12 0 chr13 34258929 34259171 -67613998 - AluJo SINE Alu -66 246 2 344 334 58 30 chr13 34259202 34259597 -67613572 - L1ME LINE L1 -338 5783 5378 790 239 163 35 chr13 34260789 34261157 -67612012 - L1ME1 LINE L1 -4 6162 5748 * 1082 194 51 77 chr13 34261155 34261204 -67611965 + L1ME2 LINE L1 5559 5608 -556 2226 126 0 0 chr13 34261204 34261514 -67611655 + AluSx SINE Alu 1 310 -2 1082 194 51 77 chr13 34261514 34261814 -67611355 + L1ME2 LINE L1 5608 5899 -265 1569 165 73 0 chr13 34261955 34262215 -67610954 - AluJb SINE Alu -33 279 1 629 321 37 47 chr13 34262216 34262618 -67610551 - L1MEd LINE L1 -5286 833 436 548 308 19 10 chr13 34262742 34262950 -67610219 - L1MEd LINE L1 -5899 220 11 492 310 54 10 chr13 34262959 34263162 -67610007 - L3 LINE CR1 -715 862 651 353 350 122 14 chr13 34264021 34264235 -67608934 + MIR SINE MIR 20 256 -6 712 184 28 14 chr13 34264357 34264498 -67608671 + FLAM_C SINE Alu 1 143 0 384 305 103 62 chr13 34264568 34264840 -67608329 - L1MC4a LINE L1 -1470 6338 6056 242 272 11 22 chr13 34264854 34264946 -67608223 - L1MC4a LINE L1 -1907 5901 5811 498 233 0 17 chr13 34264990 34265110 -67608059 - L1MC4a LINE L1 -2001 5807 5690 652 219 159 56 chr13 34265120 34265288 -67607881 - L1MC4a LINE L1 -2232 5576 5368 2079 134 0 0 chr13 34265288 34265578 -67607591 - AluSx SINE Alu -20 292 3 652 219 159 56 chr13 34265578 34265679 -67607490 - L1MC4a LINE L1 -2440 5368 5279 549 290 114 18 chr13 34265842 34266114 -67607055 - HAL1b LINE L1 -835 513 216 662 145 145 8 chr13 34266342 34266459 -67606710 - FLAM_A SINE Alu 0 133 1 876 134 0 0 chr13 34266723 34266850 -67606319 - FLAM_C SINE Alu -16 127 1 302 186 75 36 chr13 34267482 34267585 -67605584 + LTR48 LTR ERV1 486 751 -13 1794 142 0 53 chr13 34267614 34267916 -67605253 - AluJb SINE Alu -26 286 1 574 301 122 44 chr13 34268032 34268583 -67604586 - HAL1b LINE L1 -498 850 257 398 170 140 0 chr13 34268673 34268773 -67604396 - L1MB4 LINE L1 -2 6178 6065 4049 176 117 20 chr13 34269068 34270495 -67602674 - L1PA16 LINE L1 -1 6165 4352 402 21 0 0 chr13 34270495 34270542 -67602627 + (TG)n Simple_repeat Simple_repeat 1 47 0 4049 176 117 20 chr13 34270542 34270798 -67602371 - L1PA16 LINE L1 -1814 4352 4122 207 0 0 0 chr13 34271001 34271024 -67602145 + (TA)n Simple_repeat Simple_repeat 1 23 0 1673 197 28 0 chr13 34271072 34271361 -67601808 + AluJb SINE Alu 1 297 -15 336 217 130 36 chr13 34271371 34271509 -67601660 - L1MB4 LINE L1 -2240 5802 5652 488 235 45 8 chr13 34271527 34271659 -67601510 + L1ME LINE L1 5406 5542 -622 * 817 227 89 38 chr13 34271646 34271937 -67601232 - L1MB4 LINE L1 -511 5655 5350 457 228 131 67 chr13 34271928 34272196 -67600973 - L1ME4a LINE L1 -234 5887 5603 * 2311 94 16 0 chr13 34272289 34272597 -67600572 + AluSq SINE Alu 1 313 0 279 54 0 0 chr13 34273519 34273556 -67599613 + (CCA)n Simple_repeat Simple_repeat 1 37 0 344 284 219 22 chr13 34274877 34275060 -67598109 + MIR SINE MIR 21 239 -23 349 202 87 10 chr13 34275255 34275359 -67597810 + L1ME4a LINE L1 5992 6103 -18 2273 65 0 26 chr13 34275426 34275732 -67597437 + AluSx SINE Alu 1 298 -14 596 103 164 35 chr13 34275737 34275853 -67597316 + FLAM_C SINE Alu 1 131 -2 401 120 0 40 chr13 34275866 34275941 -67597228 + L1ME LINE L1 5533 5604 -517 23 33 0 0 chr13 34275958 34275988 -67597181 + AT_rich Low_complexity Low_complexity 1 30 0 663 276 93 16 chr13 34276538 34276975 -67596194 - L1ME LINE L1 -336 5768 5305 528 281 107 60 chr13 34277126 34277731 -67595438 - L1ME LINE L1 -1956 4173 3518 258 302 147 23 chr13 34278121 34278720 -67594449 - L1ME LINE L1 -3044 3085 2413 316 219 100 62 chr13 34278811 34278971 -67594198 - L1ME LINE L1 -3850 2279 2114 1961 125 0 0 chr13 34279042 34279306 -67593863 - AluSx SINE Alu -24 288 25 349 267 104 45 chr13 34279691 34280028 -67593141 - HAL1b LINE L1 -770 1653 457 235 261 120 28 chr13 34280074 34280216 -67592953 - L1ME LINE L1 -5070 1049 895 180 182 0 136 chr13 34280265 34280331 -67592838 - L3 LINE CR1 -294 1283 1227 271 238 100 81 chr13 34280557 34280717 -67592452 + L1ME LINE L1 5599 5761 -360 53 0 0 0 chr13 34280717 34280770 -67592399 + AT_rich Low_complexity Low_complexity 1 53 0 253 169 99 14 chr13 34280977 34281048 -67592121 - MIR SINE MIR -50 212 136 312 27 0 0 chr13 34281249 34281286 -67591883 + (TA)n Simple_repeat Simple_repeat 2 38 0 2051 97 12 66 chr13 34281890 34282210 -67590959 - AluSg SINE Alu -7 303 1 8342 164 23 47 chr13 34282210 34283074 -67590095 - L1MC3 LINE L1 -25 7760 6877 2199 125 0 3 chr13 34283074 34283377 -67589792 - AluSx SINE Alu -10 302 1 8342 164 23 47 chr13 34283377 34283922 -67589247 - L1MC3 LINE L1 -908 6877 6399 1369 185 70 21 chr13 34283922 34284208 -67588961 + AluSg SINE Alu 3 302 -8 8342 164 23 47 chr13 34284208 34284565 -67588604 - L1MC3 LINE L1 -1386 6399 6035 4168 191 73 22 chr13 34284634 34285640 -67587529 - Charlie1a DNA MER1_type 0 1455 399 933 205 44 57 chr13 34285705 34285934 -67587235 - Charlie1a DNA MER1_type -1219 236 11 1835 119 8 8 chr13 34287215 34287476 -67585693 - AluSx SINE Alu -12 300 40 1445 142 41 0 chr13 34287933 34288152 -67585017 - AluJo SINE Alu -82 230 3 297 289 0 48 chr13 34288177 34288260 -67584909 - MIR SINE MIR -172 90 12 228 291 197 33 chr13 34288265 34288621 -67584548 + L2 LINE L2 2005 2473 -841 185 343 152 39 chr13 34288622 34288800 -67584369 + L2 LINE L2 2678 2875 -439 21 0 0 0 chr13 34289193 34289214 -67583955 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 34289651 34289682 -67583487 + AT_rich Low_complexity Low_complexity 1 31 0 600 266 48 16 chr13 34290644 34290832 -67582337 + MIR SINE MIR 36 229 -33 2969 209 47 65 chr13 34291413 34292218 -67580951 - MER21B LTR ERV1 -54 809 19 274 238 60 24 chr13 34292243 34292327 -67580842 - MER21B LTR ERV1 -776 87 1 1989 116 7 23 chr13 34292785 34293088 -67580081 - AluSx SINE Alu -12 300 3 894 180 72 68 chr13 34293114 34293392 -67579777 - LTR4 LTR ERV1 0 596 318 512 249 19 80 chr13 34293584 34293797 -67579372 - LTR4 LTR ERV1 -396 200 1 534 241 87 34 chr13 34293923 34294130 -67579039 - LTR48B LTR ERV1 -304 340 123 1675 179 0 39 chr13 34294559 34294866 -67578303 + AluJo SINE Alu 1 295 -17 596 278 51 63 chr13 34295282 34295319 -67577850 - LTR24B LTR ERV1 -6 570 534 2290 106 0 0 chr13 34295319 34295612 -67577557 - AluSq SINE Alu -16 297 5 596 278 51 63 chr13 34295612 34295908 -67577261 - LTR24B LTR ERV1 -42 534 241 1486 196 10 27 chr13 34295933 34296234 -67576935 + AluJo SINE Alu 3 298 -14 406 181 9 57 chr13 34296293 34296398 -67576771 - LTR24B LTR ERV1 -365 100 1 1336 223 7 40 chr13 34296433 34296734 -67576435 - AluJo SINE Alu -21 291 1 23 33 0 0 chr13 34296862 34296892 -67576277 + AT_rich Low_complexity Low_complexity 1 30 0 1966 138 10 14 chr13 34296895 34297191 -67575978 + AluSx SINE Alu 1 295 -17 1019 325 121 36 chr13 34298746 34299416 -67573753 - L3 LINE CR1 -673 904 178 23 33 0 0 chr13 34299459 34299489 -67573680 + AT_rich Low_complexity Low_complexity 1 30 0 1893 157 14 3 chr13 34300345 34300631 -67572538 + AluJb SINE Alu 1 289 -23 1676 161 9 40 chr13 34300735 34301057 -67572112 - AluJo SINE Alu 0 312 1 220 191 43 0 chr13 34301438 34301485 -67571684 + (CATA)n Simple_repeat Simple_repeat 4 52 0 180 0 0 0 chr13 34301694 34301714 -67571455 + (TA)n Simple_repeat Simple_repeat 2 21 0 866 125 0 22 chr13 34301715 34301851 -67571318 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr13 34301851 34301881 -67571288 + AT_rich Low_complexity Low_complexity 1 30 0 202 190 17 35 chr13 34302546 34302604 -67570565 + CT-rich Low_complexity Low_complexity 2 58 0 1948 160 0 3 chr13 34303048 34303354 -67569815 + AluJb SINE Alu 1 305 -7 2031 142 0 14 chr13 34303760 34304056 -67569113 + AluSx SINE Alu 1 292 -20 543 300 89 0 chr13 34304083 34304263 -67568906 + L1ME4a LINE L1 5447 5642 -2166 1138 186 5 9 chr13 34304555 34304765 -67568404 - MER3 DNA MER1_type 0 209 1 2341 94 51 14 chr13 34304775 34305126 -67568043 - THE1B LTR MaLR 0 364 1 1848 186 0 3 chr13 34305272 34305568 -67567601 - AluJb SINE Alu -17 295 1 23 0 0 0 chr13 34305571 34305594 -67567575 + AT_rich Low_complexity Low_complexity 1 23 0 868 185 20 0 chr13 34305934 34306085 -67567084 + FAM SINE Alu 12 165 -20 1658 163 16 16 chr13 34306934 34307240 -67565929 + AluJb SINE Alu 1 306 -6 530 230 122 12 chr13 34307411 34307584 -67565585 - MIR SINE MIR -33 229 39 1952 139 3 3 chr13 34308425 34308719 -67564450 + AluJb SINE Alu 1 294 -18 317 266 53 35 chr13 34308767 34308880 -67564289 + L1ME4a LINE L1 5815 5929 -235 303 200 130 20 chr13 34309051 34309151 -67564018 + L1ME4a LINE L1 5976 6086 -35 187 286 302 0 chr13 34309302 34309428 -67563741 - MIR3 SINE MIR -7 201 38 767 226 6 28 chr13 34310440 34310621 -67562548 - MIR SINE MIR -55 207 31 1859 155 30 0 chr13 34313398 34313701 -67559468 - AluJo SINE Alu 0 312 1 2148 107 3 3 chr13 34314041 34314351 -67558818 - AluSq SINE Alu 0 313 1 366 277 218 16 chr13 34314659 34314847 -67558322 + MIR SINE MIR 34 259 -3 1458 196 57 45 chr13 34315642 34315820 -67557349 + MER58B DNA MER1_type 2 187 -2233 1526 189 60 0 chr13 34315820 34316101 -67557068 + AluJo SINE Alu 1 298 -14 1458 196 57 45 chr13 34316101 34316258 -67556911 + MER58B DNA MER1_type 187 341 0 1732 155 7 42 chr13 34317115 34317424 -67555745 - AluJo SINE Alu -14 298 1 217 310 195 17 chr13 34317818 34317992 -67555177 + MIR SINE MIR 10 214 -48 714 259 96 0 chr13 34318492 34318689 -67554480 + MIR SINE MIR 26 241 -21 902 132 90 0 chr13 34318888 34319032 -67554137 - AluSg/x SINE Alu -1 311 155 2248 108 10 0 chr13 34319372 34319677 -67553492 - AluSx SINE Alu -4 308 1 1077 266 57 55 chr13 34319697 34319775 -67553394 - L1MC4a LINE L1 -1872 5936 5860 2300 100 0 16 chr13 34319775 34320085 -67553084 + AluSx SINE Alu 1 305 -7 1077 266 57 55 chr13 34320085 34320424 -67552745 - L1MC4a LINE L1 -1948 5860 5518 1119 178 70 19 chr13 34320753 34320966 -67552203 + AluJb SINE Alu 1 224 -88 24 67 0 0 chr13 34320975 34321020 -67552149 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr13 34321898 34321930 -67551239 + AT_rich Low_complexity Low_complexity 1 32 0 1814 174 7 3 chr13 34322461 34322748 -67550421 + AluJb SINE Alu 3 290 -22 2440 199 151 100 chr13 34323169 34324425 -67548744 - HAL1 LINE L1 -559 1948 630 2561 50 0 0 chr13 34324851 34325152 -67548017 - AluSg SINE Alu -5 305 5 2185 79 4 0 chr13 34325251 34325579 -67547590 - AluSg SINE Alu 0 330 2 207 0 0 0 chr13 34325891 34325914 -67547255 + (CGGG)n Simple_repeat Simple_repeat 2 24 0 280 291 196 59 chr13 34326435 34326613 -67546556 - L2 LINE L2 -38 3234 3082 1622 58 19 0 chr13 34326613 34326818 -67546351 - AluSp SINE Alu -9 304 96 280 291 196 59 chr13 34326818 34326910 -67546259 - L2 LINE L2 -190 3082 2927 1084 304 125 29 chr13 34327021 34327979 -67545190 + L2 LINE L2 2247 3297 -16 220 128 0 0 chr13 34327984 34328023 -67545146 + L2 LINE L2 3275 3313 0 2435 93 3 0 chr13 34330783 34331095 -67542074 - AluSp SINE Alu 0 313 1 2419 84 10 0 chr13 34331463 34331773 -67541396 - AluSq SINE Alu 0 313 1 29 37 0 19 chr13 34331773 34331800 -67541369 + AT_rich Low_complexity Low_complexity 1 27 -26 1877 162 0 7 chr13 34331800 34332096 -67541073 + AluJb SINE Alu 1 294 -18 29 37 0 19 chr13 34332096 34332122 -67541047 + AT_rich Low_complexity Low_complexity 27 53 0 2008 116 13 13 chr13 34332502 34332805 -67540364 - AluSq SINE Alu -10 303 1 974 200 76 89 chr13 34333271 34333504 -67539665 + MER33 DNA MER1_type 1 226 -2359 1914 146 36 7 chr13 34333504 34333806 -67539363 - AluSx SINE Alu -1 311 1 974 200 76 89 chr13 34333806 34333900 -67539269 + MER33 DNA MER1_type 226 320 -4 1741 149 10 30 chr13 34333950 34334246 -67538923 + AluJb SINE Alu 1 290 -22 5070 32 17 3 chr13 34334270 34334861 -67538308 + SVA Other Other 635 1233 -153 277 43 43 0 chr13 34334878 34334925 -67538244 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 228 234 62 0 chr13 34335789 34335853 -67537316 - MIR SINE MIR 0 262 195 1197 182 91 23 chr13 34335897 34336161 -67537008 + AluJo SINE Alu 1 282 -30 2554 65 0 7 chr13 34336677 34336985 -67536184 - AluY SINE Alu -3 308 3 534 289 86 31 chr13 34337090 34337381 -67535788 - L1ME3A LINE L1 -307 5863 5557 1358 108 10 0 chr13 34337381 34337575 -67535594 - Tigger5 DNA MER2_type -77 2246 2051 813 161 8 0 chr13 34337574 34337704 -67535465 - MER2 DNA MER2_type -214 131 1 * 355 233 0 0 chr13 34337747 34337837 -67535332 - L1ME3A LINE L1 -1495 4651 4562 41 0 0 0 chr13 34337853 34337894 -67535275 + AT_rich Low_complexity Low_complexity 1 41 0 220 258 54 12 chr13 34337927 34338094 -67535075 + (TATG)n Simple_repeat Simple_repeat 2 175 0 * 374 218 41 24 chr13 34338010 34338180 -67534989 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 264 172 0 17 chr13 34338193 34338251 -67534918 - L1ME3A LINE L1 -1610 4536 4480 198 0 0 0 chr13 34338319 34338341 -67534828 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 586 318 72 18 chr13 34338357 34338801 -67534368 - L1ME3A LINE L1 -1785 4361 3894 398 204 65 126 chr13 34338912 34338997 -67534172 - L1MC4 LINE L1 -128 7914 7825 2213 105 3 10 chr13 34338997 34339293 -67533876 - AluSc SINE Alu -15 294 1 398 204 65 126 chr13 34339293 34339320 -67533849 - L1MC4 LINE L1 -217 7825 7798 2452 119 28 19 chr13 34339320 34339681 -67533488 + THE1B LTR MaLR 1 364 0 398 204 65 126 chr13 34339681 34339797 -67533372 - L1MC4 LINE L1 -244 7798 7699 1928 151 3 7 chr13 34339815 34340107 -67533062 - AluJb SINE Alu -21 291 1 1647 149 76 21 chr13 34340265 34340553 -67532616 - AluJo SINE Alu -8 304 1 453 285 20 0 chr13 34340603 34340622 -67532547 - L1MA10 LINE L1 -1 6333 6315 1502 239 74 9 chr13 34340622 34341069 -67532100 - L1ME2 LINE L1 -14 6150 5675 2325 87 0 3 chr13 34341110 34341410 -67531759 - AluSq SINE Alu -14 299 1 305 316 62 11 chr13 34341492 34341669 -67531500 - L1ME2 LINE L1 -1771 4375 4190 1605 192 107 0 chr13 34341704 34342248 -67530921 - L1ME LINE L1 -510 5656 5046 2517 73 0 0 chr13 34343111 34343413 -67529756 - AluSq SINE Alu -11 302 1 482 296 129 21 chr13 34343467 34343700 -67529469 - MLT1L LTR MaLR -6 609 352 1838 164 0 23 chr13 34344255 34344560 -67528609 + AluJb SINE Alu 3 300 -12 656 298 113 55 chr13 34345150 34345238 -67527931 + L2 LINE L2 2285 2366 -947 441 0 0 0 chr13 34345238 34345287 -67527882 + (CA)n Simple_repeat Simple_repeat 2 50 0 656 298 113 55 chr13 34345287 34346158 -67527011 + L2 LINE L2 2366 3297 -16 275 269 34 89 chr13 34346279 34346381 -67526788 - L1M4 LINE L1 -914 5232 5126 1782 157 28 3 chr13 34346381 34346667 -67526502 - AluJo SINE Alu -19 293 1 275 269 34 89 chr13 34346667 34346891 -67526278 - L1M4 LINE L1 -1020 5126 4924 24 0 0 0 chr13 34348107 34348131 -67525038 + AT_rich Low_complexity Low_complexity 1 24 0 999 223 70 4 chr13 34348317 34348546 -67524623 - MIR SINE MIR -13 249 6 2790 10 0 0 chr13 34348617 34348915 -67524254 - AluY SINE Alu -11 300 3 237 237 61 53 chr13 34349443 34349557 -67523612 + L1MC5 LINE L1 7793 7907 -54 2295 89 0 7 chr13 34349825 34350129 -67523040 - AluSc SINE Alu -7 302 1 2271 116 0 0 chr13 34352542 34352845 -67520324 - AluSg SINE Alu -7 303 1 922 86 8 16 chr13 34353457 34353585 -67519584 + L1PB2 LINE L1 6023 6149 -2 2342 96 0 3 chr13 34354257 34354558 -67518611 - AluSq SINE Alu -13 300 1 2135 139 0 0 chr13 34355029 34355330 -67517839 - AluSx SINE Alu -11 301 1 536 205 31 75 chr13 34355564 34355669 -67517500 - MER5A DNA MER1_type -6 183 86 2467 93 0 0 chr13 34355669 34355980 -67517189 + AluSx SINE Alu 1 311 -1 536 205 31 75 chr13 34355980 34356035 -67517134 - MER5A DNA MER1_type -103 86 30 343 255 152 37 chr13 34356334 34356577 -67516592 + L1ME4a LINE L1 5848 6118 -3 224 296 37 12 chr13 34358604 34358685 -67514484 + L2 LINE L2 3190 3272 0 184 226 151 21 chr13 34359225 34359318 -67513851 + MER5A DNA MER1_type 1 105 -84 2487 79 0 0 chr13 34359390 34359695 -67513474 - AluSc SINE Alu -4 305 1 1988 140 64 14 chr13 34360275 34360632 -67512537 - THE1C LTR MaLR 0 375 1 1913 141 54 30 chr13 34360955 34361079 -67512090 - L1MB3 LINE L1 0 6183 6064 2211 120 3 84 chr13 34361079 34361446 -67511723 - MER1B DNA MER1_type 0 337 1 1913 141 54 30 chr13 34361446 34361689 -67511480 - L1MB3 LINE L1 -119 6064 5807 183 158 0 0 chr13 34362075 34362113 -67511056 + L2 LINE L2 3275 3312 -1 192 152 0 0 chr13 34364282 34364315 -67508854 + (CA)n Simple_repeat Simple_repeat 2 34 0 2204 81 14 17 chr13 34364534 34364831 -67508338 + AluSx SINE Alu 1 296 -16 2429 80 0 3 chr13 34365525 34365824 -67507345 + AluSg SINE Alu 1 298 -12 806 175 8 8 chr13 34367948 34368074 -67505095 - FLAM_A SINE Alu -7 126 1 1766 156 13 30 chr13 34368211 34368513 -67504656 + AluJb SINE Alu 1 297 -15 195 184 0 0 chr13 34368529 34368567 -67504602 + (TA)n Simple_repeat Simple_repeat 2 39 0 2037 98 73 11 chr13 34368660 34368947 -67504222 - AluSx SINE Alu -7 305 1 259 224 30 15 chr13 34369002 34369069 -67504100 - L2 LINE L2 0 3272 3205 193 286 0 0 chr13 34369206 34369255 -67503914 + L3 LINE CR1 1350 1398 -179 382 221 202 10 chr13 34369951 34370055 -67503114 - L2 LINE L2 -1 3271 3148 998 58 8 0 chr13 34371107 34371228 -67501941 + L1PA10 LINE L1 6047 6168 0 2347 81 10 0 chr13 34371716 34372011 -67501158 + AluSp SINE Alu 1 298 -15 22 35 0 0 chr13 34372699 34372728 -67500441 + AT_rich Low_complexity Low_complexity 1 29 0 2001 132 0 23 chr13 34372762 34373065 -67500104 + AluSx SINE Alu 6 301 -11 1671 169 53 3 chr13 34373485 34373769 -67499400 - AluJo SINE Alu -14 298 1 2255 93 3 3 chr13 34373970 34374292 -67498877 + AluSp SINE Alu 1 313 0 4013 108 9 9 chr13 34376167 34376694 -67496475 - MER1A DNA MER1_type 0 527 1 1961 128 35 0 chr13 34377579 34377861 -67495308 - AluJb SINE Alu -20 292 1 2365 85 10 7 chr13 34377892 34378197 -67494972 + AluSg SINE Alu 1 306 -4 2279 184 24 52 chr13 34378272 34378683 -67494486 + L1MB5 LINE L1 5678 6074 -100 1938 96 4 0 chr13 34378683 34378932 -67494237 + AluSx SINE Alu 51 300 -12 2279 184 24 52 chr13 34378932 34379024 -67494145 + L1MB5 LINE L1 6074 6167 -7 1760 158 41 3 chr13 34379769 34380061 -67493108 - AluJb SINE Alu -9 303 1 2128 108 14 11 chr13 34380600 34380887 -67492282 + AluSx SINE Alu 1 288 -24 240 200 78 0 chr13 34380887 34380977 -67492192 + GA-rich Low_complexity Low_complexity 1 97 0 2505 67 0 0 chr13 34381401 34381700 -67491469 + AluY SINE Alu 1 299 -12 1990 114 0 0 chr13 34382684 34382946 -67490223 + AluSc SINE Alu 1 262 -47 219 304 53 76 chr13 34383050 34383221 -67489948 - L2 LINE L2 -595 2719 2553 658 292 46 38 chr13 34383543 34383783 -67489386 + L1MB3 LINE L1 5515 5756 -2052 21 36 0 0 chr13 34384121 34384149 -67489020 + AT_rich Low_complexity Low_complexity 1 28 0 2304 120 3 40 chr13 34384283 34384633 -67488536 + MER1B DNA MER1_type 1 337 0 760 235 64 80 chr13 34385545 34385796 -67487373 - MIR SINE MIR -13 249 3 2317 82 20 0 chr13 34385979 34386272 -67486897 - AluY SINE Alu -12 299 1 973 124 0 8 chr13 34387420 34387549 -67485620 + FLAM_C SINE Alu 1 128 -5 2522 167 14 29 chr13 34387714 34387792 -67485377 + L1MB3 LINE L1 5706 5784 -399 4772 167 39 24 chr13 34387792 34388137 -67485032 + MER6 DNA MER2_type 1 339 -526 186 43 0 0 chr13 34388137 34388160 -67485009 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 4772 167 39 24 chr13 34388160 34388203 -67484966 + MER6 DNA MER2_type 339 380 -485 2370 71 3 7 chr13 34388203 34388500 -67484669 + AluSq SINE Alu 11 306 -7 4772 167 39 24 chr13 34388500 34388961 -67484208 + MER6 DNA MER2_type 380 864 -1 2522 167 14 29 chr13 34388961 34389157 -67484012 + L1MB3 LINE L1 5784 5981 -202 2582 60 0 0 chr13 34389157 34389459 -67483710 + AluY SINE Alu 1 302 -9 2522 167 14 29 chr13 34389459 34389668 -67483501 + L1MB3 LINE L1 5981 6183 0 818 227 52 0 chr13 34390411 34390583 -67482586 - MLT1G LTR MaLR -49 541 361 483 197 90 90 chr13 34390610 34390798 -67482371 - MER21B LTR ERV1 -361 570 290 411 321 64 28 chr13 34391343 34391592 -67481577 + L1M4 LINE L1 4491 4748 -1398 1847 116 18 39 chr13 34391612 34391897 -67481272 + AluSx SINE Alu 21 299 -13 478 276 26 0 chr13 34391936 34392092 -67481077 + HAL1 LINE L1 990 1149 -1358 808 126 34 145 chr13 34392109 34392316 -67480853 + AluJb SINE Alu 120 303 -9 245 244 199 77 chr13 34392323 34392386 -67480783 + HAL1 LINE L1 1202 1256 -1251 1781 133 0 67 chr13 34392386 34392702 -67480467 - AluJo SINE Alu -17 295 1 245 244 199 77 chr13 34392702 34392884 -67480285 + HAL1 LINE L1 1256 1477 -1030 801 130 0 21 chr13 34392896 34393158 -67480011 + AluJb SINE Alu 2 307 -5 2003 149 20 0 chr13 34393158 34393459 -67479710 + AluSx SINE Alu 1 307 -5 276 370 31 8 chr13 34393583 34393710 -67479459 + L3b LINE CR1 1102 1231 -352 2343 88 7 3 chr13 34394082 34394387 -67478782 + AluSg SINE Alu 1 306 -4 2641 48 0 0 chr13 34394388 34394698 -67478471 + AluY SINE Alu 2 311 0 6092 61 55 7 chr13 34394769 34396084 -67477085 + SVA Other Other 1 1415 0 671 310 43 53 chr13 34397944 34398341 -67474828 - L1MC4a LINE L1 -1926 5882 5490 2251 95 0 14 chr13 34398422 34398717 -67474452 + AluSc SINE Alu 1 291 -18 456 221 387 6 chr13 34398739 34398920 -67474249 - MIR SINE MIR 0 262 13 1864 142 0 56 chr13 34399069 34399207 -67473962 + AluJb SINE Alu 1 145 -167 2061 132 0 22 chr13 34399207 34399526 -67473643 + AluSx SINE Alu 1 312 0 1864 142 0 56 chr13 34399526 34399711 -67473458 + AluJb SINE Alu 145 306 -6 425 241 88 29 chr13 34400535 34400672 -67472497 - MIR SINE MIR -38 224 80 2236 102 3 0 chr13 34400842 34401137 -67472032 + AluSp SINE Alu 1 296 -17 2056 151 0 0 chr13 34401823 34402121 -67471048 + AluJb SINE Alu 2 299 -13 1740 153 25 11 chr13 34402297 34402579 -67470590 + AluSx SINE Alu 1 286 -26 2449 76 0 3 chr13 34403226 34403527 -67469642 - AluSq SINE Alu -13 300 1 2177 132 0 0 chr13 34403557 34403861 -67469308 - AluSx SINE Alu -8 304 1 2137 114 0 0 chr13 34403916 34404196 -67468973 - AluSx SINE Alu -32 280 1 22 0 0 0 chr13 34404381 34404403 -67468766 + AT_rich Low_complexity Low_complexity 1 22 0 2893 143 54 14 chr13 34404408 34404911 -67468258 + L1MB3 LINE L1 5539 6061 -122 5243 113 26 5 chr13 34404912 34405681 -67467488 + L1PA16 LINE L1 5373 6157 -9 2306 76 33 3 chr13 34405684 34405985 -67467184 + AluY SINE Alu 1 310 -1 691 167 0 16 chr13 34406003 34406129 -67467040 + L1MB3 LINE L1 6053 6176 -7 2120 125 46 3 chr13 34407862 34408191 -67464978 + MER2 DNA MER2_type 1 343 -1 2251 80 3 3 chr13 34409120 34409421 -67463748 + AluY SINE Alu 1 301 -10 1747 169 3 13 chr13 34410081 34410382 -67462787 + AluJb SINE Alu 1 298 -14 1268 328 139 33 chr13 34410856 34411974 -67461195 - L2 LINE L2 -528 2786 1550 2160 96 0 0 chr13 34411984 34412291 -67460878 + AluSq SINE Alu 2 308 0 551 167 175 0 chr13 34412450 34412570 -67460599 - L1M4 LINE L1 -627 5557 5417 1878 116 20 14 chr13 34412673 34412965 -67460204 + AluJo SINE Alu 1 294 -18 276 30 0 0 chr13 34413159 34413192 -67459977 + (TG)n Simple_repeat Simple_repeat 2 34 0 2016 113 3 10 chr13 34413332 34413625 -67459544 - AluSg SINE Alu -19 291 1 29 0 0 0 chr13 34415434 34415463 -67457706 + GC_rich Low_complexity Low_complexity 1 29 0 279 236 0 45 chr13 34415977 34416066 -67457103 - MIR3 SINE MIR -15 193 109 327 243 38 2 chr13 34416565 34416676 -67456493 + MER67B LTR ERV1 352 661 0 180 247 0 130 chr13 34416698 34416775 -67456394 + L2 LINE L2 2995 3061 -211 230 257 284 28 chr13 34416898 34417007 -67456162 + L2 LINE L2 3172 3308 -5 181 244 0 110 chr13 34417163 34417245 -67455924 - L2 LINE L2 -14 3258 3186 1846 138 39 0 chr13 34417496 34417778 -67455391 + AluSx SINE Alu 6 298 -14 831 176 0 0 chr13 34417954 34418090 -67455079 + FLAM_C SINE Alu 2 137 -6 1554 175 10 30 chr13 34418197 34418500 -67454669 - AluJo SINE Alu -15 297 1 2152 122 0 0 chr13 34418697 34419000 -67454169 + AluSx SINE Alu 3 305 -7 1746 174 0 3 chr13 34419041 34419351 -67453818 - AluJo SINE Alu -3 309 1 1694 118 3 96 chr13 34419804 34420126 -67453043 + AluSq SINE Alu 1 292 -21 399 211 26 18 chr13 34420137 34420245 -67452924 + L1MC4 LINE L1 7466 7675 -367 853 181 0 19 chr13 34420245 34420405 -67452764 - FRAM SINE Alu -19 157 1 289 264 76 61 chr13 34420418 34420541 -67452628 + L1MC5 LINE L1 7579 7699 -343 1793 148 29 0 chr13 34420541 34420858 -67452311 + AluJo SINE Alu 1 325 0 289 264 76 61 chr13 34420858 34421014 -67452155 + L1MC5 LINE L1 7699 7968 -74 1672 137 108 0 chr13 34421048 34421326 -67451843 - AluSg SINE Alu -2 308 1 371 264 11 0 chr13 34421415 34421502 -67451667 - L2 LINE L2 0 3272 3185 500 286 93 6 chr13 34421529 34421690 -67451479 + LTR16A LTR ERVL 18 192 -258 6239 71 19 58 chr13 34421919 34423806 -67449363 + SVA Other Other 17 1386 0 2151 108 3 3 chr13 34423841 34424146 -67449023 + AluSx SINE Alu 8 312 0 737 201 67 12 chr13 34424148 34424312 -67448857 + LTR16A LTR ERVL 206 378 -72 2533 305 47 34 chr13 34424322 34424950 -67448219 + ERVL LTR ERVL 4057 4675 -1089 5246 59 6 0 chr13 34424950 34425593 -67447576 + L1PA8 LINE L1 5521 6167 -5 2533 305 47 34 chr13 34425593 34426192 -67446977 + ERVL LTR ERVL 4675 5300 -464 2115 145 92 36 chr13 34426366 34426759 -67446410 - MSTB LTR MaLR 0 426 12 259 211 18 18 chr13 34426799 34426856 -67446313 + LTR16A LTR ERVL 96 152 -298 427 231 77 17 chr13 34426890 34427007 -67446162 + LTR16A LTR ERVL 327 450 0 330 333 44 19 chr13 34427112 34427271 -67445898 - L2 LINE L2 -220 3052 2890 1633 131 37 0 chr13 34427302 34427547 -67445622 + AluSx SINE Alu 1 254 -58 1270 170 39 4 chr13 34427547 34427776 -67445393 - AluJb SINE Alu -69 243 7 433 314 0 16 chr13 34427789 34427913 -67445256 - L2 LINE L2 -540 2774 2653 2052 127 0 10 chr13 34427939 34428247 -67444922 + AluSc SINE Alu 5 309 0 1793 263 80 50 chr13 34428255 34428580 -67444589 + MER115 DNA AcHobo 114 428 -265 8290 44 0 0 chr13 34428580 34429549 -67443620 + LTR5 LTR ERVK 1 969 0 1793 263 80 50 chr13 34429549 34429660 -67443509 + MER115 DNA AcHobo 428 534 -159 1637 178 3 26 chr13 34429660 34429964 -67443205 + AluJb SINE Alu 1 297 -15 1793 263 80 50 chr13 34429964 34430089 -67443080 + MER115 DNA AcHobo 534 693 0 446 291 104 32 chr13 34430103 34430336 -67442833 + L1MEc LINE L1 1528 1929 -814 2047 117 7 7 chr13 34430336 34430634 -67442535 - AluSx SINE Alu -14 298 1 446 291 104 32 chr13 34430634 34430651 -67442518 + L1MEc LINE L1 1929 1943 -800 773 146 0 23 chr13 34430904 34431034 -67442135 - FLAM_C SINE Alu -6 137 11 22 0 0 0 chr13 34431049 34431071 -67442098 + AT_rich Low_complexity Low_complexity 1 22 0 2376 64 3 0 chr13 34431215 34431513 -67441656 - AluY SINE Alu -12 299 1 815 153 45 51 chr13 34432074 34432104 -67441065 + FAM SINE Alu 1 4294967192 -289 2887 180 68 62 chr13 34432104 34432448 -67440721 - LTR8A LTR ERV1 0 727 386 2314 82 0 13 chr13 34432448 34432763 -67440406 + AluY SINE Alu 1 311 0 2887 180 68 62 chr13 34432763 34433141 -67440028 - LTR8A LTR ERV1 -341 386 1 815 153 45 51 chr13 34433141 34433287 -67439882 + FAM SINE Alu -105 40 -9 976 227 154 18 chr13 34433730 34433899 -67439270 - MLT1J2 LTR MaLR -125 325 180 4656 125 25 11 chr13 34433899 34434619 -67438550 + MER50 LTR ERV1 1 730 -4 976 227 154 18 chr13 34434619 34434735 -67438434 - MLT1J2 LTR MaLR -270 180 1 325 171 57 14 chr13 34434746 34434816 -67438353 - MIR SINE MIR -70 192 120 383 154 0 0 chr13 34434820 34434902 -67438267 - L1MA4A LINE L1 -1 6276 6074 1523 176 120 0 chr13 34434922 34435189 -67437980 - AluJb SINE Alu -1 301 3 414 336 0 0 chr13 34435190 34435300 -67437869 - MIR SINE MIR -133 129 20 188 338 29 0 chr13 34435402 34435470 -67437699 - MIR3 SINE MIR -52 156 87 2124 103 16 13 chr13 34435533 34435664 -67437505 + AluSx SINE Alu 1 130 -182 2288 80 0 17 chr13 34435664 34435963 -67437206 + AluSp SINE Alu 1 294 -19 2124 103 16 13 chr13 34435963 34436142 -67437027 + AluSx SINE Alu 130 312 0 1863 121 15 0 chr13 34436260 34436532 -67436637 + AluSx SINE Alu 5 280 -32 204 40 0 0 chr13 34436533 34436558 -67436611 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 457 190 197 42 chr13 34436589 34436731 -67436438 + MLT1J2 LTR MaLR 162 325 -125 824 164 0 0 chr13 34437164 34437298 -67435871 + AluJo SINE Alu 1 134 -178 1760 115 12 127 chr13 34437573 34437912 -67435257 - AluSx SINE Alu -2 300 1 1243 158 95 60 chr13 34438958 34439242 -67433927 - AluJo SINE Alu -18 294 1 244 307 0 0 chr13 34439506 34439581 -67433588 + L1M4 LINE L1 3986 4060 -2086 1722 246 55 50 chr13 34439601 34440182 -67432987 + MLT1G LTR MaLR 7 590 0 330 289 127 12 chr13 34440187 34440533 -67432636 + L1M4 LINE L1 4075 4460 -1686 500 269 33 61 chr13 34440780 34440992 -67432177 + L1ME LINE L1 255 460 -5610 * 1121 238 32 94 chr13 34440983 34441484 -67431685 + L1ME LINE L1 116 562 -5508 2114 80 40 10 chr13 34441484 34441786 -67431383 - AluY SINE Alu 0 311 1 1121 238 32 94 chr13 34441786 34442095 -67431074 + L1ME LINE L1 562 888 -5182 389 257 49 83 chr13 34442100 34442306 -67430863 + L1M4 LINE L1 4474 4663 -1483 2079 113 10 0 chr13 34442306 34442597 -67430572 + AluSx SINE Alu 1 294 -18 389 257 49 83 chr13 34442597 34442775 -67430394 + L1M4 LINE L1 4663 4845 -1301 2303 177 40 42 chr13 34442927 34443430 -67429739 - L1MA10 LINE L1 -10 6324 5823 344 113 0 0 chr13 34443430 34443483 -67429686 - AluSx SINE Alu -1 301 249 1381 92 22 0 chr13 34443483 34443668 -67429501 - AluSx SINE Alu -123 189 1 1450 139 0 0 chr13 34443699 34443908 -67429261 + AluSg SINE Alu 2 210 -100 632 220 43 10 chr13 34443908 34444117 -67429052 + HAL1 LINE L1 1050 1265 -1242 1783 136 4 0 chr13 34444124 34444396 -67428773 + AluSx SINE Alu 1 273 -39 449 213 71 8 chr13 34444411 34444538 -67428631 - MIR SINE MIR -38 224 90 649 221 0 43 chr13 34444543 34444683 -67428486 - FLAM_C SINE Alu -4 139 6 1986 120 0 0 chr13 34444803 34445109 -67428060 - AluSx SINE Alu 0 306 1 1535 110 7 123 chr13 34446480 34446789 -67426380 + AluSx SINE Alu 16 288 -24 440 240 60 160 chr13 34446800 34446889 -67426280 - MIR3 SINE MIR -10 198 138 1497 151 10 67 chr13 34446889 34447188 -67425981 + AluJo SINE Alu 1 282 -30 440 240 60 160 chr13 34447188 34447298 -67425871 - MIR3 SINE MIR -70 138 19 243 268 155 54 chr13 34447571 34447739 -67425430 + MLT1L LTR MaLR 1 185 -430 2008 130 0 7 chr13 34447860 34448159 -67425010 - AluSq SINE Alu -16 297 1 568 265 48 32 chr13 34448227 34448416 -67424753 + MLT1L LTR MaLR 411 602 -13 316 233 93 0 chr13 34448420 34448506 -67424663 + MIR SINE MIR 107 200 -62 2174 110 0 3 chr13 34448840 34449150 -67424019 - AluSg SINE Alu -1 309 1 237 296 12 0 chr13 34449150 34449231 -67423938 + L1ME LINE L1 5603 5684 -437 2227 67 24 7 chr13 34449354 34449652 -67423517 + AluY SINE Alu 1 303 -8 713 43 0 11 chr13 34450386 34450480 -67422689 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 1837 152 0 14 chr13 34450481 34450777 -67422392 - AluJo SINE Alu -20 292 1 2349 58 3 0 chr13 34450814 34451108 -67422061 + AluY SINE Alu 1 295 -16 374 229 26 52 chr13 34451552 34451705 -67421464 - MER20B DNA MER1_type -19 764 616 261 0 0 0 chr13 34451711 34451740 -67421429 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1312 133 35 0 chr13 34451743 34451946 -67421223 - AluJo SINE Alu -30 282 73 400 197 0 40 chr13 34452057 34452133 -67421036 - AluJo SINE Alu -228 74 2 * 1520 248 45 73 chr13 34452133 34452501 -67420668 - MER20B DNA MER1_type -169 614 263 2028 107 0 0 chr13 34452501 34452841 -67420328 - AluSg SINE Alu 0 340 1 1520 248 45 73 chr13 34452841 34453004 -67420165 - MER20B DNA MER1_type -520 263 97 641 271 42 47 chr13 34454533 34454725 -67418444 - MIR SINE MIR -28 234 44 2109 66 0 0 chr13 34455882 34456141 -67417028 - AluSc SINE Alu -12 297 39 210 71 0 0 chr13 34456327 34456355 -67416814 + (T)n Simple_repeat Simple_repeat 1 28 0 2079 124 0 0 chr13 34456368 34456666 -67416503 + AluSx SINE Alu 1 298 -14 1692 164 4 0 chr13 34456673 34456953 -67416216 - AluJb SINE Alu -30 282 2 2225 103 0 0 chr13 34457134 34457444 -67415725 - AluSg SINE Alu 0 310 1 904 154 143 0 chr13 34457472 34457647 -67415522 + AluSg/x SINE Alu 84 283 -27 217 0 61 0 chr13 34457652 34457685 -67415484 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1746 122 13 55 chr13 34458368 34458679 -67414490 + AluSx SINE Alu 1 298 -14 945 129 0 0 chr13 34458680 34458870 -67414299 + AluJb SINE Alu 142 331 0 1772 133 35 90 chr13 34458981 34459349 -67413820 + MER7A DNA MER2_type 1 346 0 742 144 0 24 chr13 34459803 34459928 -67413241 - FLAM_C SINE Alu -19 124 3 1679 139 31 17 chr13 34460690 34461005 -67412164 + AluJo SINE Alu 1 312 0 1594 143 16 0 chr13 34461161 34461412 -67411757 + AluSx SINE Alu 45 299 -13 26 50 0 0 chr13 34461765 34461805 -67411364 + AT_rich Low_complexity Low_complexity 1 40 0 210 268 18 0 chr13 34462198 34462254 -67410915 - L3 LINE CR1 -162 1415 1359 230 314 57 14 chr13 34462385 34462455 -67410714 - L2 LINE L2 -37 3276 3204 549 274 104 38 chr13 34462528 34462740 -67410429 - MIR SINE MIR -14 248 23 705 301 59 80 chr13 34463410 34463856 -67409313 - L1MEd LINE L1 -5364 755 328 2136 103 0 7 chr13 34463856 34464156 -67409013 + AluSg SINE Alu 3 300 -10 705 301 59 80 chr13 34464156 34464434 -67408735 - L1MEd LINE L1 -5791 328 46 4420 101 23 3 chr13 34464968 34465574 -67407595 - MER51A LTR ERV1 -16 618 1 1701 159 7 3 chr13 34466707 34467003 -67406166 - AluJb SINE Alu -10 302 6 709 141 17 85 chr13 34467009 34467035 -67406134 + MER67C LTR ERV1 8 34 -676 917 179 41 9 chr13 34467035 34467253 -67405916 + L1MA4 LINE L1 6072 6296 -4 709 141 17 85 chr13 34467253 34467403 -67405766 + MER67C LTR ERV1 34 172 -538 666 238 12 12 chr13 34467404 34467572 -67405597 + FRAM SINE Alu 1 168 -8 2875 180 49 9 chr13 34467572 34468106 -67405063 + MER67C LTR ERV1 156 710 0 405 0 0 0 chr13 34468409 34468454 -67404715 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1415 162 7 57 chr13 34468457 34468627 -67404542 - AluJo SINE Alu -30 282 132 2053 115 0 10 chr13 34468627 34468923 -67404246 + AluSp SINE Alu 1 293 -20 1415 162 7 57 chr13 34468923 34469049 -67404120 - AluJo SINE Alu -180 132 1 561 298 35 29 chr13 34469637 34469808 -67403361 + MIR SINE MIR 21 192 -70 1526 171 7 20 chr13 34469862 34470154 -67403015 - AluJo SINE Alu -24 288 1 192 293 40 91 chr13 34470169 34470268 -67402901 - L2 LINE L2 -38 3234 3141 281 226 0 128 chr13 34471171 34471273 -67401896 - LTR33 LTR ERVL -432 89 1 599 175 0 47 chr13 34471924 34472160 -67401009 + GA-rich Low_complexity Low_complexity 1 224 0 278 289 0 40 chr13 34472160 34472179 -67400990 + polypurine Low_complexity Low_complexity 1 72 0 1969 148 3 0 chr13 34472179 34472544 -67400625 + AluSx SINE Alu 1 366 0 214 151 0 75 chr13 34472569 34472622 -67400547 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 387 285 199 5 chr13 34472805 34472991 -67400178 - MIR SINE MIR -18 244 23 295 271 107 0 chr13 34473070 34473192 -67399977 + HAL1 LINE L1 320 454 -2053 1875 134 6 16 chr13 34473250 34473563 -67399606 + AluJb SINE Alu 1 310 -2 651 276 110 46 chr13 34473800 34473929 -67399240 - L1MC4 LINE L1 -1 8041 7922 2092 139 0 0 chr13 34473929 34474239 -67398930 - AluSx SINE Alu -2 310 1 651 276 110 46 chr13 34474239 34474718 -67398451 - L1MC4 LINE L1 -120 7922 7365 2358 78 0 0 chr13 34474718 34475025 -67398144 - AluY SINE Alu -4 307 1 651 276 110 46 chr13 34475025 34475173 -67397996 - L1MC4 LINE L1 -677 7365 7228 346 233 78 11 chr13 34475222 34475312 -67397857 + HAL1 LINE L1 812 907 -1600 555 276 70 60 chr13 34475312 34475482 -67397687 + HAL1 LINE L1 866 1033 -1474 1793 140 23 30 chr13 34475482 34475782 -67397387 - AluJo SINE Alu -14 298 1 555 276 70 60 chr13 34475782 34475912 -67397257 + HAL1 LINE L1 1033 1160 -1347 2174 119 0 0 chr13 34475912 34476222 -67396947 + AluSg SINE Alu 1 310 0 555 276 70 60 chr13 34476222 34476351 -67396818 + HAL1 LINE L1 1160 1300 -1207 1590 136 81 34 chr13 34476353 34476648 -67396521 + AluJb SINE Alu 1 309 -3 398 156 16 148 chr13 34476663 34476785 -67396384 + L1MA9 LINE L1 6156 6269 -30 25 51 0 0 chr13 34476786 34476825 -67396344 + AT_rich Low_complexity Low_complexity 1 39 0 526 164 229 0 chr13 34476831 34476971 -67396198 + HAL1 LINE L1 1372 1543 -964 2208 109 0 3 chr13 34476974 34477278 -67395891 + AluSx SINE Alu 1 303 -9 1877 140 0 7 chr13 34477289 34477589 -67395580 + AluJo SINE Alu 1 298 -14 2364 49 0 0 chr13 34477592 34477928 -67395241 + AluY SINE Alu 1 336 0 3411 198 94 7 chr13 34477958 34478796 -67394373 + L1MC4a LINE L1 6898 7808 0 1833 234 115 39 chr13 34478799 34479471 -67393698 + HAL1 LINE L1 1553 2275 -232 450 270 0 0 chr13 34479879 34479994 -67393175 + MER103 DNA DNA 2 116 -50 2195 125 0 0 chr13 34480732 34481044 -67392125 + AluSx SINE Alu 1 312 0 243 140 0 0 chr13 34482169 34482219 -67390950 + (G)n Simple_repeat Simple_repeat 1 50 0 1374 168 37 0 chr13 34483034 34483278 -67389891 + AluJo SINE Alu 38 290 -22 299 262 159 19 chr13 34483279 34483386 -67389783 + MIR3 SINE MIR 81 202 -6 1831 145 33 3 chr13 34483937 34484240 -67388929 + AluJb SINE Alu 1 312 0 31 0 0 0 chr13 34484633 34484664 -67388505 + AT_rich Low_complexity Low_complexity 1 31 0 765 192 0 0 chr13 34484664 34484794 -67388375 - FLAM_C SINE Alu -12 131 2 1836 167 16 87 chr13 34485231 34485657 -67387512 - MSTD LTR MaLR 0 396 1 1622 158 16 41 chr13 34485860 34486176 -67386993 + AluJo SINE Alu 3 310 -2 575 215 98 31 chr13 34486247 34486307 -67386862 - MER104 DNA Tc2 -1724 174 119 1429 121 8 163 chr13 34486307 34486670 -67386499 + AluJb SINE Alu 1 307 -5 575 215 98 31 chr13 34486670 34486772 -67386397 - MER104 DNA Tc2 -1779 119 1 28 0 0 0 chr13 34487293 34487321 -67385848 + AT_rich Low_complexity Low_complexity 1 28 0 312 209 9 0 chr13 34487330 34487407 -67385762 + L1MA4A LINE L1 6210 6290 -10 2221 121 108 5 chr13 34487463 34487851 -67385318 - MSTA LTR MaLR 0 428 1 1053 191 39 0 chr13 34488015 34488219 -67384950 + AluJb SINE Alu 86 297 -15 341 204 186 54 chr13 34488219 34488386 -67384783 - L1ME3A LINE L1 -19 6151 5963 841 152 7 0 chr13 34488396 34488534 -67384635 - FLAM_C SINE Alu -4 139 1 1136 200 169 31 chr13 34488534 34488687 -67384482 - L1ME3A LINE L1 -196 5974 5843 1648 153 14 11 chr13 34488687 34488974 -67384195 - AluJb SINE Alu -24 288 1 1136 200 169 31 chr13 34488974 34489140 -67384029 - L1ME3A LINE L1 -327 5843 5611 344 143 14 0 chr13 34489360 34489430 -67383739 + GA-rich Low_complexity Low_complexity 2 72 0 2070 105 3 16 chr13 34491550 34491854 -67381315 - AluSg SINE Alu -10 300 1 1800 158 16 13 chr13 34492183 34492494 -67380675 - AluJb SINE Alu 0 312 1 2267 67 40 0 chr13 34493214 34493511 -67379658 + AluY SINE Alu 1 309 -2 2107 105 0 0 chr13 34493528 34493813 -67379356 + AluSq SINE Alu 1 285 -28 1871 126 16 48 chr13 34494672 34494847 -67378322 - AluSq SINE Alu -13 300 138 2050 110 3 0 chr13 34494847 34495129 -67378040 - AluSx SINE Alu -29 283 1 1871 126 16 48 chr13 34495129 34495263 -67377906 - AluSq SINE Alu -175 138 1 239 320 140 22 chr13 34495300 34495478 -67377691 - L2 LINE L2 -44 3228 3030 2144 199 24 46 chr13 34495478 34495981 -67377188 - LTR53 LTR ERVL 0 519 28 2249 93 0 6 chr13 34495987 34496299 -67376870 + AluY SINE Alu 1 310 -1 1142 112 18 0 chr13 34496299 34496468 -67376701 + AluSg/x SINE Alu 132 303 -7 258 163 23 0 chr13 34496468 34496511 -67376658 - LTR53 LTR ERVL -475 44 1 204 186 186 0 chr13 34496540 34496599 -67376570 - L2 LINE L2 -302 2970 2901 212 317 17 0 chr13 34497078 34497138 -67376031 + MER5A DNA MER1_type 128 188 -1 715 213 0 0 chr13 34497215 34497342 -67375827 - FLAM_A SINE Alu -6 127 1 2347 62 3 3 chr13 34497850 34498154 -67375015 + AluY SINE Alu 1 304 -7 2247 91 0 0 chr13 34498440 34498737 -67374432 - AluY SINE Alu -14 297 1 1174 188 0 5 chr13 34498751 34498974 -67374195 - AluJo SINE Alu -4 308 87 1154 156 72 54 chr13 34498983 34499259 -67373910 - L1MB7 LINE L1 -2 6182 5902 309 241 134 18 chr13 34500436 34500548 -67372621 - HAL1b LINE L1 -519 829 705 1747 152 7 20 chr13 34500695 34500997 -67372172 - AluSx SINE Alu -14 298 1 204 279 0 0 chr13 34501243 34501286 -67371883 + MIR SINE MIR 109 151 -57 212 386 24 24 chr13 34501480 34501607 -67371562 + L2 LINE L2 2966 3092 -180 225 257 79 63 chr13 34501890 34502102 -67371067 + L2 LINE L2 2998 3293 -20 1473 152 54 123 chr13 34502126 34502141 -67371028 + L1MD2 LINE L1 5297 5311 -1048 198 71 0 0 chr13 34502141 34502169 -67371000 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1473 152 54 123 chr13 34502169 34502336 -67370833 + L1MD2 LINE L1 5311 5488 -871 2035 129 3 6 chr13 34502336 34502647 -67370522 + AluSg SINE Alu 1 310 0 1473 152 54 123 chr13 34502647 34502986 -67370183 + L1MD2 LINE L1 5488 5849 -510 2030 129 3 0 chr13 34502986 34503295 -67369874 - AluSx SINE Alu -2 310 1 1473 152 54 123 chr13 34503295 34503521 -67369648 + L1MD2 LINE L1 5849 6089 -270 284 0 28 0 chr13 34503521 34503557 -67369612 + (CA)n Simple_repeat Simple_repeat 2 38 0 1473 152 54 123 chr13 34503557 34503673 -67369496 + L1MD2 LINE L1 6089 6211 -148 2048 97 24 3 chr13 34503673 34503962 -67369207 - AluSq SINE Alu -18 295 1 1473 152 54 123 chr13 34503962 34504100 -67369069 + L1MD2 LINE L1 6211 6358 -1 3773 181 46 36 chr13 34504420 34504621 -67368548 - L1MB3 LINE L1 -66 6117 5919 1425 160 21 108 chr13 34504621 34505002 -67368167 - MER7A DNA MER2_type 0 346 1 3773 181 46 36 chr13 34505002 34505623 -67367546 - L1MB3 LINE L1 -264 5919 5287 2250 69 0 3 chr13 34505868 34506190 -67366979 + AluY SINE Alu 1 321 0 936 108 15 0 chr13 34507185 34507315 -67365854 + AluSx SINE Alu 1 132 -181 1108 145 102 0 chr13 34507324 34507510 -67365659 - LTR12 LTR ERV1 -133 581 377 268 265 29 20 chr13 34507510 34507612 -67365557 - LTR30 LTR ERV1 -79 643 541 2859 159 150 27 chr13 34507612 34508395 -67364774 - pTR5 LTR ERV1 -440 1523 5 1040 152 23 6 chr13 34508407 34508578 -67364591 + AluSx SINE Alu 119 292 -18 1609 166 38 17 chr13 34509071 34509361 -67363808 - AluJo SINE Alu -16 296 1 2210 97 0 10 chr13 34510113 34510412 -67362757 + AluSc SINE Alu 14 309 0 22 0 0 0 chr13 34510578 34510600 -67362569 + AT_rich Low_complexity Low_complexity 1 22 0 2329 98 7 0 chr13 34510854 34511149 -67362020 - AluSx SINE Alu -15 297 1 181 167 48 48 chr13 34512172 34512214 -67360955 - MER5B DNA MER1_type -135 43 2 202 288 106 0 chr13 34512232 34512298 -67360871 - MIR SINE MIR -71 191 119 189 74 0 0 chr13 34512514 34512541 -67360628 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 2050 103 0 4 chr13 34512544 34512817 -67360352 - AluSx SINE Alu -24 288 17 2143 74 13 17 chr13 34512817 34513115 -67360054 + AluY SINE Alu 15 311 0 1012 238 98 22 chr13 34513213 34513831 -67359338 + L1MD3 LINE L1 5449 6161 -5 383 234 57 91 chr13 34513903 34513945 -67359224 + L1M4 LINE L1 4384 4426 -1720 1960 125 7 17 chr13 34513945 34514241 -67358928 + AluSx SINE Alu 1 293 -19 383 234 57 91 chr13 34514241 34514463 -67358706 + L1M4 LINE L1 4426 4639 -1507 1228 130 0 0 chr13 34514468 34514637 -67358532 - AluSg/x SINE Alu -18 294 126 352 325 69 39 chr13 34514701 34514932 -67358237 + L1M4 LINE L1 4689 4926 -1220 231 254 0 0 chr13 34514990 34515053 -67358116 + L1M4 LINE L1 5265 5327 -819 2128 105 32 0 chr13 34515149 34515434 -67357735 + AluSg SINE Alu 1 294 -16 1571 132 45 69 chr13 34516362 34516651 -67356518 - AluJo SINE Alu -22 290 9 383 244 93 138 chr13 34516986 34517342 -67355827 + LTR40a LTR ERVL 1 340 -179 282 188 109 0 chr13 34517351 34517415 -67355754 + LTR40a LTR ERVL 448 518 -1 233 189 94 19 chr13 34517460 34517513 -67355656 + L2 LINE L2 2718 2774 -540 2597 62 0 0 chr13 34517994 34518299 -67354870 + AluY SINE Alu 1 305 -6 2126 126 3 0 chr13 34518907 34519200 -67353969 - AluSg SINE Alu -13 297 4 2197 109 0 22 chr13 34519432 34519743 -67353426 + AluSx SINE Alu 9 312 0 216 97 0 0 chr13 34520029 34520060 -67353109 + (TG)n Simple_repeat Simple_repeat 1 31 0 409 265 169 5 chr13 34520173 34520362 -67352807 + MIR SINE MIR 21 240 -22 23 92 0 0 chr13 34520851 34520916 -67352253 + GC_rich Low_complexity Low_complexity 1 65 0 253 286 22 0 chr13 34521043 34521134 -67352035 + (CGGGG)n Simple_repeat Simple_repeat 5 97 0 4850 69 60 22 chr13 34521624 34521707 -67351462 + PABL_A LTR ERV1 1 79 -581 2543 34 10 0 chr13 34521707 34522002 -67351167 + AluY SINE Alu 1 298 -13 4850 69 60 22 chr13 34522002 34522554 -67350615 + PABL_A LTR ERV1 79 660 0 1236 136 95 66 chr13 34522571 34522883 -67350286 + L1MB2 LINE L1 5855 6171 0 521 253 59 38 chr13 34522933 34523119 -67350050 + L2 LINE L2 3120 3309 -4 858 298 189 43 chr13 34523196 34524258 -67348911 + L2 LINE L2 1758 2974 -340 234 200 53 80 chr13 34524442 34524517 -67348652 + L2 LINE L2 3185 3257 -15 187 326 128 29 chr13 34524665 34524837 -67348332 + L3 LINE CR1 875 1063 -514 1382 153 98 29 chr13 34525043 34525318 -67347851 - AluJb SINE Alu -16 296 3 1288 154 14 32 chr13 34526256 34526477 -67346692 + MER20 DNA MER1_type 1 217 -2 2103 95 42 0 chr13 34526484 34526769 -67346400 + AluSq SINE Alu 1 297 -16 826 137 0 32 chr13 34527137 34527261 -67345908 - FLAM_A SINE Alu -10 123 4 1364 190 15 15 chr13 34527621 34527890 -67345279 + MLT1C LTR MaLR 199 467 0 4993 130 43 26 chr13 34527966 34528736 -67344433 + LTR39 LTR ERV1 1 783 0 21 36 0 0 chr13 34529961 34529989 -67343180 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr13 34531589 34531627 -67341542 + AT_rich Low_complexity Low_complexity 1 38 0 262 341 24 0 chr13 34532303 34532388 -67340781 - MIR SINE MIR -65 143 57 2318 68 0 24 chr13 34532426 34532722 -67340447 - AluY SINE Alu -20 291 3 2384 78 10 3 chr13 34532728 34533036 -67340133 - AluSg SINE Alu 0 310 1 223 333 32 21 chr13 34533588 34533681 -67339488 + MIR SINE MIR 38 131 -77 2168 87 38 10 chr13 34533696 34534052 -67339117 + AluSp SINE Alu 1 313 0 22 0 0 0 chr13 34534098 34534120 -67339049 + AT_rich Low_complexity Low_complexity 1 22 0 283 225 108 27 chr13 34534494 34534605 -67338564 + MER103 DNA DNA 2 121 -45 2280 117 0 0 chr13 34534633 34534932 -67338237 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr13 34535359 34535383 -67337786 + AT_rich Low_complexity Low_complexity 1 24 0 912 137 0 0 chr13 34535405 34535536 -67337633 + FAM SINE Alu 33 163 -22 372 200 109 36 chr13 34536137 34536247 -67336922 - L2 LINE L2 0 3313 3196 2607 55 0 3 chr13 34536296 34536605 -67336564 - AluY SINE Alu -3 308 1 24 0 0 0 chr13 34536662 34536686 -67336483 + AT_rich Low_complexity Low_complexity 1 24 0 341 272 10 0 chr13 34536872 34536975 -67336194 + L1MC4 LINE L1 7932 8035 -7 2516 87 0 0 chr13 34537541 34537851 -67335318 - AluY SINE Alu -1 310 1 2572 173 30 25 chr13 34537855 34538400 -67334769 + L1MB4 LINE L1 5417 5969 -201 2415 74 7 0 chr13 34538677 34538973 -67334196 + AluSg SINE Alu 1 298 -12 2074 125 3 3 chr13 34539536 34539823 -67333346 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr13 34539823 34539844 -67333325 + AT_rich Low_complexity Low_complexity 1 21 0 275 354 164 18 chr13 34539926 34540316 -67332853 - L2 LINE L2 -647 2667 2221 961 243 45 29 chr13 34541712 34542225 -67330944 + L1MC/D LINE L1 1006 1635 -4905 645 301 71 55 chr13 34542352 34542854 -67330315 + L1MC/D LINE L1 2427 2913 -3627 207 0 0 0 chr13 34542854 34542877 -67330292 + (CA)n Simple_repeat Simple_repeat 2 24 0 645 301 71 55 chr13 34542877 34542960 -67330209 + L1MC/D LINE L1 2913 2993 -3547 369 0 0 0 chr13 34543191 34543232 -67329937 + (CA)n Simple_repeat Simple_repeat 2 42 0 2139 141 0 0 chr13 34543256 34543560 -67329609 - AluSx SINE Alu -8 304 1 264 289 0 0 chr13 34543587 34543663 -67329506 + L1P LINE L1 2942 3017 -3129 520 124 0 62 chr13 34543666 34543763 -67329406 + L1MC1 LINE L1 6079 6169 -164 30 45 0 0 chr13 34544330 34544374 -67328795 + AT_rich Low_complexity Low_complexity 1 44 0 309 326 26 17 chr13 34544387 34544620 -67328549 + L1MC/D LINE L1 4078 4312 -2228 1158 227 64 6 chr13 34544707 34545095 -67328074 + L1MC/D LINE L1 5497 5921 -743 942 243 64 12 chr13 34545251 34545502 -67327667 + L1MC/D LINE L1 5937 6200 -2002 533 143 48 0 chr13 34545715 34545799 -67327370 - AluJo SINE Alu -175 137 50 2008 145 3 0 chr13 34546004 34546294 -67326875 - AluSx SINE Alu -21 291 1 230 268 79 55 chr13 34546316 34546480 -67326689 + L2 LINE L2 2078 2245 -1069 1307 104 6 0 chr13 34546833 34547016 -67326153 + AluSg/x SINE Alu 129 312 0 634 238 50 44 chr13 34547166 34547347 -67325822 + MIR SINE MIR 77 258 -4 416 360 81 0 chr13 34547604 34547765 -67325404 + MIR SINE MIR 20 193 -69 381 261 50 39 chr13 34548867 34549008 -67324161 + MIR SINE MIR 42 183 -60 1686 142 98 0 chr13 34550031 34550306 -67322863 + AluSx SINE Alu 1 302 -10 2118 124 7 7 chr13 34550491 34550798 -67322371 + AluSx SINE Alu 1 307 -5 2287 61 0 4 chr13 34551094 34551373 -67321796 + AluY SINE Alu 1 278 -33 180 0 0 0 chr13 34551376 34551396 -67321773 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr13 34552387 34552409 -67320760 + (A)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chr13 34552673 34552701 -67320468 + AT_rich Low_complexity Low_complexity 1 28 0 2065 160 89 83 chr13 34552704 34552846 -67320323 - L1MB8 LINE L1 -2 6176 6036 2283 103 0 0 chr13 34552846 34553137 -67320032 + AluSg1 SINE Alu 1 291 -18 2453 88 3 0 chr13 34553147 34553453 -67319716 + AluSc SINE Alu 1 307 -2 2065 160 89 83 chr13 34553453 34553863 -67319306 - L1MB8 LINE L1 -150 6028 5610 2443 63 0 13 chr13 34553863 34554163 -67319006 - AluY SINE Alu -15 296 1 1626 186 4 0 chr13 34554163 34554443 -67318726 - AluJb SINE Alu -21 291 11 301 241 25 13 chr13 34554455 34554534 -67318635 + MER113 DNA MER1_type? 408 487 -34 2051 143 7 0 chr13 34555203 34555497 -67317672 - AluSx SINE Alu -15 297 2 1728 158 0 35 chr13 34556230 34556515 -67316654 + AluJo SINE Alu 14 288 -24 2319 114 0 0 chr13 34556724 34557031 -67316138 + AluSx SINE Alu 3 309 -3 8196 115 41 33 chr13 34557162 34557510 -67315659 + HSMAR2 DNA Mariner 2 346 -956 2512 64 0 0 chr13 34557510 34557808 -67315361 + AluY SINE Alu 1 298 -13 8196 115 41 33 chr13 34557808 34558747 -67314422 + HSMAR2 DNA Mariner 346 1299 -3 288 305 225 42 chr13 34559039 34559059 -67314110 - MIR SINE MIR 0 262 247 2363 79 13 0 chr13 34559059 34559364 -67313805 + AluY SINE Alu 1 309 -2 288 305 225 42 chr13 34559364 34559556 -67313613 - MIR SINE MIR -15 247 11 368 211 73 28 chr13 34559605 34559714 -67313455 + L1ME3A LINE L1 6042 6155 -15 2153 100 47 3 chr13 34559807 34560106 -67313063 + AluSx SINE Alu 1 312 0 25 0 0 0 chr13 34560152 34560177 -67312992 + AT_rich Low_complexity Low_complexity 1 25 0 1335 32 0 0 chr13 34560177 34560333 -67312836 - L1PA3 LINE L1 -2 6153 5998 2210 92 0 14 chr13 34560343 34560636 -67312533 - AluY SINE Alu -22 289 1 1869 144 0 46 chr13 34560639 34560945 -67312224 - AluJb SINE Alu -20 292 1 2107 131 0 7 chr13 34562839 34563145 -67310024 - AluSx SINE Alu -8 304 1 451 271 125 56 chr13 34563316 34563619 -67309550 + MLT1H LTR MaLR 226 549 0 336 256 43 57 chr13 34563704 34563934 -67309235 - L1M4 LINE L1 -3135 3011 2785 675 215 70 17 chr13 34564096 34564268 -67308901 - MER119 DNA MER1_type -400 183 3 276 100 0 0 chr13 34564456 34564496 -67308673 + (TA)n Simple_repeat Simple_repeat 1 40 0 258 56 0 0 chr13 34564496 34564532 -67308637 + (GA)n Simple_repeat Simple_repeat 1 36 0 546 265 86 60 chr13 34564619 34564683 -67308486 - Charlie2 DNA MER1_type -2307 475 414 2253 88 3 3 chr13 34564683 34564978 -67308191 - AluSp SINE Alu -18 295 1 546 265 86 60 chr13 34564978 34565181 -67307988 - Charlie2 DNA MER1_type -2368 414 201 244 233 82 0 chr13 34565346 34565419 -67307750 - MER116 DNA Mariner -1 79 1 4341 216 65 35 chr13 34566047 34567107 -67306062 - L1MD2 LINE L1 0 6359 5332 525 16 0 0 chr13 34567107 34567169 -67306000 + (TG)n Simple_repeat Simple_repeat 2 63 0 824 211 0 12 chr13 34567169 34567330 -67305839 - FAM SINE Alu -16 159 1 4341 216 65 35 chr13 34567330 34568577 -67304592 - L1MD2 LINE L1 -1026 5333 3962 246 233 50 0 chr13 34568945 34569005 -67304164 + MIR SINE MIR 64 126 -136 255 230 27 40 chr13 34569200 34569274 -67303895 + MER5C DNA MER1_type 4 76 -248 4352 145 65 47 chr13 34569424 34569525 -67303644 - L1MA8 LINE L1 -4 6287 6189 1829 173 17 3 chr13 34569525 34569820 -67303349 + AluSx SINE Alu 1 299 -13 4352 145 65 47 chr13 34569820 34569939 -67303230 - L1MA8 LINE L1 -102 6189 6074 2077 148 77 0 chr13 34569939 34570277 -67302892 + THE1B LTR MaLR 1 364 0 4352 145 65 47 chr13 34570277 34571013 -67302156 - L1MA8 LINE L1 -217 6074 5285 2411 68 0 3 chr13 34571013 34571306 -67301863 - AluY SINE Alu -15 296 5 4352 145 65 47 chr13 34571306 34571778 -67301391 - L1MA8 LINE L1 -1006 5285 4823 1579 165 16 3 chr13 34572004 34572325 -67300844 - L1MA8 LINE L1 -1330 4816 4492 781 229 139 11 chr13 34573516 34573783 -67299386 + L1ME3A LINE L1 5870 6170 0 933 96 0 0 chr13 34574154 34574269 -67298900 - AluSx SINE Alu -137 175 61 331 309 107 34 chr13 34574469 34574647 -67298522 + L2 LINE L2 3005 3195 -118 21 36 0 0 chr13 34574795 34574823 -67298346 + AT_rich Low_complexity Low_complexity 1 28 0 2193 112 10 0 chr13 34574919 34575213 -67297956 - AluSx SINE Alu -15 297 1 21 0 0 0 chr13 34575305 34575326 -67297843 + AT_rich Low_complexity Low_complexity 1 21 0 2475 81 0 0 chr13 34575338 34575645 -67297524 + AluY SINE Alu 1 307 -4 1452 157 56 94 chr13 34575737 34576056 -67297113 + AluJb SINE Alu 1 307 -5 210 242 187 11 chr13 34576268 34576359 -67296810 + MIR SINE MIR 155 261 -1 2117 117 0 16 chr13 34576616 34576932 -67296237 + AluSx SINE Alu 1 311 -1 1937 153 20 3 chr13 34576965 34577266 -67295903 + AluSx SINE Alu 1 306 -6 305 262 0 12 chr13 34577675 34577759 -67295410 + LTR67 LTR ERVL 458 540 -17 248 270 11 11 chr13 34577995 34578084 -67295085 - L1M4 LINE L1 -2319 3827 3739 214 346 59 7 chr13 34579493 34579646 -67293523 + L2 LINE L2 2144 2304 -1010 407 219 42 10 chr13 34579727 34579823 -67293346 + MER58 DNA MER1_type 1 99 -242 398 184 11 0 chr13 34579839 34579926 -67293243 + MER58 DNA MER1_type 2324 2411 -9 1047 229 106 29 chr13 34579927 34580202 -67292967 + AluJb SINE Alu 1 296 -6 2217 113 0 0 chr13 34580266 34580559 -67292610 + AluSx SINE Alu 1 293 -19 398 259 142 77 chr13 34580690 34581107 -67292062 + L2 LINE L2 2318 2761 -553 1913 146 17 0 chr13 34581183 34581477 -67291692 + AluJo SINE Alu 1 299 -13 2662 52 3 0 chr13 34582303 34582613 -67290556 + AluY SINE Alu 1 311 0 469 289 25 47 chr13 34582661 34582896 -67290273 + HAL1b LINE L1 149 378 -970 255 235 29 0 chr13 34583059 34583127 -67290042 + HAL1b LINE L1 668 737 -611 1786 147 40 25 chr13 34583143 34583469 -67289700 + MER1B DNA MER1_type 9 339 0 1968 140 7 19 chr13 34583571 34583879 -67289290 + AluSx SINE Alu 1 304 -8 1725 257 113 27 chr13 34583969 34585071 -67288098 + L1MD1 LINE L1 2980 4228 -1918 2251 86 13 3 chr13 34585071 34585372 -67287797 + AluSc SINE Alu 1 304 -5 1725 257 113 27 chr13 34585372 34585538 -67287631 + L1MD1 LINE L1 4228 4378 -1768 1674 177 0 20 chr13 34585543 34585843 -67287326 + AluJb SINE Alu 1 294 -18 1583 171 43 21 chr13 34585854 34586135 -67287034 + AluJo SINE Alu 11 297 -15 2446 212 70 22 chr13 34586135 34587249 -67285920 + L1MD1 LINE L1 4504 5704 -538 189 0 0 0 chr13 34587249 34587270 -67285899 + (CA)n Simple_repeat Simple_repeat 2 22 0 2446 212 70 22 chr13 34587270 34587430 -67285739 + L1MD1 LINE L1 5704 5855 -387 617 155 26 0 chr13 34587435 34587551 -67285618 + L1MD1 LINE L1 6108 6226 -16 338 298 126 79 chr13 34587808 34588278 -67284891 + L1MC4a LINE L1 6126 6617 -1191 202 188 58 0 chr13 34588279 34588348 -67284821 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 1428 230 40 89 chr13 34588483 34588899 -67284270 + L1MC5 LINE L1 6749 7184 -777 3444 128 29 6 chr13 34588899 34589414 -67283755 - MER1A DNA MER1_type 0 527 1 1428 230 40 89 chr13 34589414 34589698 -67283471 + L1MC5 LINE L1 7184 7404 -557 1717 164 44 17 chr13 34589698 34589996 -67283173 + AluJb SINE Alu 1 306 -6 1428 230 40 89 chr13 34589996 34590139 -67283030 + L1MC5 LINE L1 7404 7552 -409 469 87 0 14 chr13 34590139 34590208 -67282961 + MLT2B3 LTR ERVL 1 68 -486 585 204 24 22 chr13 34590308 34590512 -67282657 + MLT2B3 LTR ERVL 78 326 -189 9736 31 4 179 chr13 34590759 34592432 -67280737 + SVA Other Other 1 1379 -7 26 0 0 0 chr13 34592432 34592458 -67280711 + AT_rich Low_complexity Low_complexity 1 26 0 494 253 66 50 chr13 34592759 34593130 -67280039 + L1MEd LINE L1 892 1306 -4869 960 98 23 0 chr13 34593210 34593342 -67279827 + AluSq/x SINE Alu 1 135 -177 1778 172 10 10 chr13 34593342 34593645 -67279524 + AluJo SINE Alu 1 303 -9 252 0 0 0 chr13 34593676 34593704 -67279465 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 438 299 236 35 chr13 34593734 34594750 -67278419 + L2 LINE L2 1050 2269 -1045 495 113 65 48 chr13 34594953 34595077 -67278092 - L1MB8 LINE L1 -5 6173 6048 851 110 8 24 chr13 34595077 34595193 -67277976 - FLAM_C SINE Alu -196 116 1 377 220 0 51 chr13 34595194 34595312 -67277857 - L1MB7 LINE L1 -129 6055 5944 210 289 157 31 chr13 34595471 34595630 -67277539 + L2 LINE L2 2244 2422 -892 * 212 286 116 0 chr13 34595628 34595740 -67277429 + MIR SINE MIR 132 256 -6 373 239 134 16 chr13 34595798 34596045 -67277124 - L1MEd LINE L1 -5155 964 689 28 0 0 0 chr13 34596554 34596582 -67276587 + AT_rich Low_complexity Low_complexity 1 28 0 2543 62 0 3 chr13 34596698 34597003 -67276166 + AluSx SINE Alu 7 310 -2 289 191 0 48 chr13 34597047 34597131 -67276038 + L1MA10 LINE L1 6202 6281 -53 388 270 30 0 chr13 34597234 34597334 -67275835 + MIR SINE MIR 63 165 -97 2099 95 0 4 chr13 34597585 34597859 -67275310 + AluSg SINE Alu 27 299 -11 389 262 18 50 chr13 34597925 34598280 -67274889 - L1MEc LINE L1 -3913 2339 2003 495 319 90 32 chr13 34598363 34598739 -67274430 - L1MEc LINE L1 -5663 542 145 3652 192 83 10 chr13 34598839 34599741 -67273428 - L1MB7 LINE L1 -9 6175 5162 1718 183 33 13 chr13 34599741 34600041 -67273128 - AluJb SINE Alu -6 306 1 3652 192 83 10 chr13 34600041 34600384 -67272785 - L1MB7 LINE L1 -1022 5162 4846 228 67 0 0 chr13 34600396 34600426 -67272743 + (A)n Simple_repeat Simple_repeat 1 30 0 949 178 4 54 chr13 34600448 34600689 -67272480 - L1MB7 LINE L1 -1305 4841 4613 212 197 0 33 chr13 34600689 34600750 -67272419 + A-rich Low_complexity Low_complexity 3 61 0 566 166 106 13 chr13 34600762 34600913 -67272256 - L1MB7 LINE L1 -1540 4606 4442 267 175 48 0 chr13 34600949 34601012 -67272157 - L1MB7 LINE L1 -1696 4450 4385 792 175 32 7 chr13 34601023 34601177 -67271992 - AluJb SINE Alu -19 293 136 1414 190 0 101 chr13 34601184 34601521 -67271648 - AluJb SINE Alu -9 303 1 1452 233 22 3 chr13 34601523 34601888 -67271281 - L1MB7 LINE L1 -1780 4366 3995 * 1919 243 47 44 chr13 34601873 34602082 -67271087 + L1ME1 LINE L1 5386 5593 -573 2211 115 0 3 chr13 34602082 34602377 -67270792 + AluSx SINE Alu 1 294 -18 1919 243 47 44 chr13 34602377 34602897 -67270272 + L1ME1 LINE L1 5593 6117 -49 1774 161 11 3 chr13 34603481 34603766 -67269403 - AluJb SINE Alu -25 287 1 2080 128 6 31 chr13 34604434 34604754 -67268415 + AluSx SINE Alu 1 312 0 950 126 0 7 chr13 34605642 34605777 -67267392 - AluSq/x SINE Alu -179 134 1 997 115 22 28 chr13 34606894 34607065 -67266104 + MER2 DNA MER2_type 30 201 -144 1567 186 16 33 chr13 34607065 34607371 -67265798 - AluJo SINE Alu -11 301 1 462 214 67 57 chr13 34607613 34607715 -67265454 + L1MC5 LINE L1 7705 7805 -156 2118 133 109 14 chr13 34607715 34608083 -67265086 + MER57A LTR ERV1 1 403 0 462 214 67 57 chr13 34608083 34608190 -67264979 + L1MC5 LINE L1 7805 7916 -45 1319 196 13 0 chr13 34608234 34608469 -67264700 - AluJo SINE Alu -74 238 1 273 298 114 26 chr13 34608549 34608663 -67264506 + MIR3 SINE MIR 70 193 -15 195 282 123 58 chr13 34609205 34609684 -67263485 + L2 LINE L2 1697 2206 -1108 779 216 24 61 chr13 34609724 34609937 -67263232 + MER58A DNA MER1_type 19 223 -1 2394 101 0 3 chr13 34610277 34610583 -67262586 - AluSx SINE Alu -7 305 1 253 302 42 69 chr13 34610663 34610852 -67262317 + L2 LINE L2 2996 3179 -93 262 288 164 46 chr13 34610878 34611097 -67262072 + MIR SINE MIR 18 262 0 580 254 0 0 chr13 34611266 34611380 -67261789 - MER81 DNA DNA 0 114 1 230 212 25 136 chr13 34611387 34611505 -67261664 - LTR67 LTR ERVL -20 537 433 1982 118 61 0 chr13 34612158 34612438 -67260731 + AluJb SINE Alu 1 297 -15 461 200 0 67 chr13 34612984 34613089 -67260080 + MER2 DNA MER2_type 1 98 -247 1467 168 121 0 chr13 34613532 34613788 -67259381 + AluJo SINE Alu 1 287 -25 24 0 0 0 chr13 34613793 34613817 -67259352 + AT_rich Low_complexity Low_complexity 1 24 0 285 215 51 38 chr13 34613922 34614001 -67259168 + MER116 DNA Mariner 1 80 0 581 175 0 0 chr13 34614052 34614155 -67259014 + L1M3 LINE L1 5716 5818 -365 352 298 124 0 chr13 34614331 34614452 -67258717 - L2 LINE L2 0 3272 3137 1046 163 0 0 chr13 34617069 34617235 -67255934 - AluSg/x SINE Alu -13 299 134 2534 65 0 0 chr13 34617235 34617541 -67255628 - AluSx SINE Alu -6 306 1 590 220 60 40 chr13 34617569 34617769 -67255400 + MIR SINE MIR 57 260 -2 399 188 14 0 chr13 34617999 34618068 -67255101 + AluJ/FLAM SINE Alu 1 70 -232 1223 145 0 16 chr13 34618115 34618308 -67254861 + AluJb SINE Alu 88 277 -35 189 0 0 0 chr13 34618309 34618330 -67254839 + (T)n Simple_repeat Simple_repeat 1 21 0 1537 206 7 3 chr13 34619776 34620063 -67253106 + AluJo SINE Alu 1 288 -24 252 221 137 0 chr13 34620066 34620161 -67253008 + MIR SINE MIR 124 231 -31 182 171 0 24 chr13 34620297 34620338 -67252831 - L2 LINE L2 -3 3310 3271 39 50 0 0 chr13 34621948 34622008 -67251161 + GC_rich Low_complexity Low_complexity 1 60 0 183 42 0 0 chr13 34622130 34622154 -67251015 + (CGG)n Simple_repeat Simple_repeat 3 26 0 185 108 27 0 chr13 34622160 34622197 -67250972 + G-rich Low_complexity Low_complexity 5 42 0 210 378 0 0 chr13 34622446 34622528 -67250641 + MER5B DNA MER1_type 21 102 -76 2099 211 35 18 chr13 34622593 34623048 -67250121 - LTR40c LTR ERVL -2 463 1 264 351 52 6 chr13 34623595 34623769 -67249400 - L2 LINE L2 -2422 892 711 2042 203 51 26 chr13 34623776 34624269 -67248900 + MLT1D LTR MaLR 1 505 0 226 269 104 0 chr13 34624341 34624408 -67248761 - L2 LINE L2 0 3313 3240 2466 84 0 0 chr13 34624514 34624810 -67248359 + AluSg SINE Alu 1 296 -14 637 235 186 5 chr13 34625075 34625296 -67247873 - MIR SINE MIR 0 262 2 750 154 0 0 chr13 34625369 34625486 -67247683 + FLAM_C SINE Alu 2 118 -25 216 67 0 0 chr13 34625489 34625519 -67247650 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 839 238 66 16 chr13 34625531 34625775 -67247394 - MIR SINE MIR 0 262 7 2250 89 48 0 chr13 34627794 34628087 -67245082 - AluSc SINE Alu -2 307 1 242 29 29 0 chr13 34628149 34628184 -67244985 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 236 325 0 0 chr13 34628674 34628757 -67244412 + L2 LINE L2 2977 3059 -213 2074 124 10 7 chr13 34629472 34629763 -67243406 - AluSx SINE Alu -20 292 1 253 242 74 21 chr13 34631779 34631874 -67241295 - L1MEd LINE L1 -3316 2813 2714 1179 150 45 20 chr13 34631876 34632076 -67241093 + MER3 DNA MER1_type 1 205 -4 425 237 86 20 chr13 34632087 34632239 -67240930 - L1MEd LINE L1 -4973 1146 985 1131 192 25 1 chr13 34632380 34632651 -67240518 + L1MC/D LINE L1 5198 5473 -743 3340 214 72 37 chr13 34632756 34633101 -67240068 + L1MD2 LINE L1 5392 5723 -636 2377 93 0 3 chr13 34633101 34633403 -67239766 + AluSg SINE Alu 1 301 -9 3340 214 72 37 chr13 34633403 34633974 -67239195 + L1MD2 LINE L1 5723 6340 -19 247 250 17 0 chr13 34633975 34634035 -67239134 + (TA)n Simple_repeat Simple_repeat 2 62 0 283 184 220 55 chr13 34634174 34634283 -67238886 - L1MEd LINE L1 -5981 138 12 1918 124 9 22 chr13 34634563 34634912 -67238257 - MER4A LTR ERV1 0 664 262 662 102 10 10 chr13 34634912 34635010 -67238159 - MER4A LTR ERV1 -566 98 1 400 212 195 0 chr13 34635010 34635127 -67238042 - MLT1I LTR MaLR -37 372 233 245 254 0 0 chr13 34635298 34635357 -67237812 + GA-rich Low_complexity Low_complexity 4 62 0 1977 163 70 0 chr13 34635730 34636085 -67237084 - LTR26E LTR ERV1 -48 574 195 567 240 8 8 chr13 34636092 34636213 -67236956 - LTR28 LTR ERV1 0 1020 900 1820 190 85 124 chr13 34636292 34637067 -67236102 - LTR1B LTR ERV1 -81 745 1 1072 116 35 86 chr13 34637068 34637177 -67235992 - LTR26E LTR ERV1 -434 188 75 2022 148 0 13 chr13 34637177 34637480 -67235689 - AluSx SINE Alu -10 302 4 2141 103 3 13 chr13 34637489 34637791 -67235378 - AluSx SINE Alu -13 299 1 1072 116 35 86 chr13 34637791 34637869 -67235300 - LTR26E LTR ERV1 -555 67 1 1749 193 0 7 chr13 34638432 34638737 -67234432 + AluJo SINE Alu 1 303 -9 538 283 85 5 chr13 34638867 34639079 -67234090 - MIR SINE MIR 0 262 34 360 202 36 0 chr13 34639065 34639149 -67234020 - MIR SINE MIR -59 203 117 * 439 245 0 0 chr13 34639139 34639237 -67233932 + MER5A DNA MER1_type 12 109 -80 356 255 38 0 chr13 34639270 34639376 -67233793 - MER5A DNA MER1_type 0 189 80 569 193 76 0 chr13 34639546 34639665 -67233504 - MER58B DNA MER1_type -39 302 175 418 203 50 66 chr13 34639674 34639856 -67233313 - LTR37B LTR ERV1 -74 394 216 4925 112 18 42 chr13 34639856 34640289 -67232880 - L1MC1 LINE L1 0 6333 5928 2066 151 65 45 chr13 34640289 34640635 -67232534 + LTR47A LTR ERVL 1 359 -93 207 0 0 0 chr13 34640635 34640658 -67232511 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2066 151 65 45 chr13 34640658 34640754 -67232415 + LTR47A LTR ERVL 359 452 0 4925 112 18 42 chr13 34640754 34641145 -67232024 - L1MC1 LINE L1 -405 5928 5529 3483 103 33 48 chr13 34641145 34641767 -67231402 + MER4B LTR ERV1 1 779 0 619 190 10 2 chr13 34641767 34641915 -67231254 - L1MC1 LINE L1 -801 5532 5384 2064 136 10 10 chr13 34642089 34642384 -67230785 + AluSg SINE Alu 1 295 -15 2211 177 100 93 chr13 34643001 34643723 -67229446 + LTR8A LTR ERV1 1 727 0 350 184 0 11 chr13 34644168 34644255 -67228914 + C-rich Low_complexity Low_complexity 3 88 0 679 178 16 0 chr13 34644269 34644398 -67228771 - FLAM_C SINE Alu -1 132 2 1993 97 0 0 chr13 34645717 34645974 -67227195 + AluSc SINE Alu 49 305 -4 3205 125 39 34 chr13 34646526 34646593 -67226576 + L1MA8 LINE L1 5717 5782 -509 228 67 0 0 chr13 34646593 34646623 -67226546 + (CATA)n Simple_repeat Simple_repeat 2 31 0 3205 125 39 34 chr13 34646623 34646896 -67226273 + L1MA8 LINE L1 5782 6064 -227 1642 176 48 7 chr13 34646896 34647186 -67225983 + AluJb SINE Alu 1 302 -10 3205 125 39 34 chr13 34647186 34647410 -67225759 + L1MA8 LINE L1 6064 6285 -6 2086 152 3 0 chr13 34647740 34648042 -67225127 - AluJb SINE Alu -9 303 1 240 275 38 12 chr13 34648118 34648198 -67224971 - MIR3 SINE MIR -28 180 99 1815 136 0 11 chr13 34648276 34648549 -67224620 - AluJo SINE Alu -5 307 38 1923 100 7 54 chr13 34648760 34649039 -67224130 - AluSx SINE Alu -26 286 21 776 195 12 30 chr13 34649199 34649368 -67223801 - FRAM SINE Alu 0 166 1 2060 129 0 3 chr13 34650039 34650334 -67222835 + AluJb SINE Alu 6 299 -13 360 188 35 0 chr13 34650904 34650989 -67222180 + MER53 DNA DNA 1 88 -101 1312 197 4 20 chr13 34651010 34651264 -67221905 - AluJo SINE Alu -62 250 1 241 120 220 70 chr13 34651267 34651367 -67221802 - MER53 DNA DNA -74 115 1 775 179 92 0 chr13 34651602 34651775 -67221394 + MER5A DNA MER1_type 1 189 0 2067 143 3 7 chr13 34651970 34652271 -67220898 + AluJb SINE Alu 6 305 -7 1053 205 11 0 chr13 34652362 34652547 -67220622 + Tigger7 DNA MER2_type 2 188 -517 870 161 0 0 chr13 34652547 34652696 -67220473 + MER5A DNA MER1_type 41 189 0 1647 171 16 40 chr13 34653045 34653349 -67219820 + AluJb SINE Alu 1 297 -15 215 176 0 78 chr13 34653760 34653811 -67219358 + L2 LINE L2 3225 3271 -1 516 261 78 32 chr13 34654109 34654327 -67218842 + MER112 DNA MER1_type 8 235 -25 2029 157 0 0 chr13 34654532 34654832 -67218337 + AluJo SINE Alu 1 300 -12 265 315 45 0 chr13 34655793 34655882 -67217287 + MER91C DNA MER1_type 9 101 -39 27 0 0 0 chr13 34659205 34659232 -67213937 + GC_rich Low_complexity Low_complexity 1 27 0 252 226 85 19 chr13 34659533 34659639 -67213530 + MIR SINE MIR 27 139 -123 1974 121 19 7 chr13 34659699 34660006 -67213163 - AluJb SINE Alu 0 312 2 907 266 275 14 chr13 34660456 34661530 -67211639 + L2 LINE L2 309 1662 -1652 257 164 16 16 chr13 34661530 34661591 -67211578 + L2 LINE L2 1770 1830 -1484 636 217 63 68 chr13 34662207 34662414 -67210755 + L2 LINE L2 3108 3313 0 208 274 94 47 chr13 34662405 34662511 -67210658 + L2 LINE L2 3193 3303 -10 * 652 233 138 24 chr13 34662978 34663188 -67209981 - MIR SINE MIR -21 241 8 2818 3 0 0 chr13 34663358 34663660 -67209509 + AluYa5 SINE Alu 1 302 -9 748 130 0 8 chr13 34663755 34663878 -67209291 - FLAM_C SINE Alu -21 122 1 1461 177 100 3 chr13 34665039 34665339 -67207830 - L1MB5 LINE L1 -7 6167 5839 208 267 0 0 chr13 34665605 34665650 -67207519 + L2 LINE L2 3251 3295 -18 305 311 75 9 chr13 34665726 34665887 -67207282 + MIR SINE MIR 1 172 -36 2425 93 0 0 chr13 34666361 34666662 -67206507 - AluSg SINE Alu -9 301 1 28 29 0 0 chr13 34667987 34668022 -67205147 + AT_rich Low_complexity Low_complexity 1 35 0 1631 140 4 4 chr13 34668022 34668258 -67204911 - AluSq SINE Alu -77 236 1 276 135 0 0 chr13 34669193 34669245 -67203924 - L1MB4 LINE L1 0 6180 6129 217 300 30 10 chr13 34671031 34671131 -67202038 + (TA)n Simple_repeat Simple_repeat 1 102 0 863 78 70 0 chr13 34672866 34672994 -67200175 + MER85 DNA T2_type 1 137 -2 351 296 0 10 chr13 34673097 34673195 -67199974 + MIR SINE MIR 149 245 -17 245 313 12 38 chr13 34673234 34673314 -67199855 - MIR SINE MIR -60 148 71 1227 137 66 22 chr13 34673675 34673901 -67199268 - MER46A DNA MER2_type 0 236 1 863 248 202 35 chr13 34675253 34675868 -67197301 + L2 LINE L2 2611 3313 0 949 217 136 31 chr13 34676355 34676613 -67196556 - AluJo SINE Alu -16 286 2 194 224 0 41 chr13 34679624 34679673 -67193496 - L2 LINE L2 -76 3196 3150 2312 77 10 3 chr13 34679709 34680006 -67193163 + AluSc SINE Alu 1 299 -10 1682 180 0 3 chr13 34680013 34680308 -67192861 + AluJb SINE Alu 1 294 -18 856 144 0 0 chr13 34680560 34680685 -67192484 - FLAM_C SINE Alu -18 125 1 27 0 0 0 chr13 34682815 34682842 -67190327 + AT_rich Low_complexity Low_complexity 1 27 0 1883 133 0 61 chr13 34683226 34683556 -67189613 - AluJb SINE Alu -2 310 1 25 65 0 0 chr13 34683620 34683666 -67189503 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr13 34683825 34683855 -67189314 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr13 34684429 34684475 -67188694 + AT_rich Low_complexity Low_complexity 1 46 0 1875 137 21 7 chr13 34685071 34685356 -67187813 - AluSx SINE Alu -23 289 1 2122 129 3 7 chr13 34685388 34685697 -67187472 - AluSx SINE Alu -4 308 1 1743 160 17 7 chr13 34685773 34686061 -67187108 + AluJb SINE Alu 1 291 -21 1786 176 0 7 chr13 34686738 34687028 -67186141 + AluJb SINE Alu 1 288 -24 465 296 21 14 chr13 34687265 34687407 -67185762 + MIR SINE MIR 6 148 -114 759 208 101 0 chr13 34688799 34688958 -67184211 - FAM SINE Alu 0 175 1 2318 87 0 0 chr13 34689149 34689438 -67183731 + AluY SINE Alu 1 289 -22 2014 92 3 73 chr13 34689854 34690170 -67182999 + AluSg SINE Alu 1 294 -16 340 200 306 12 chr13 34692361 34692450 -67180719 - L1ME4a LINE L1 -226 5895 5833 2321 104 0 0 chr13 34692450 34692749 -67180420 - AluSx SINE Alu -13 299 1 340 200 306 12 chr13 34692749 34692819 -67180350 - L1ME4a LINE L1 -288 5833 5689 727 197 7 20 chr13 34693707 34693854 -67179315 + MLT1F1 LTR MaLR 5 149 -418 * 1239 188 188 0 chr13 34693852 34694113 -67179056 + MLT1F1 LTR MaLR 253 562 -5 222 269 58 29 chr13 34694200 34694304 -67178865 + L2 LINE L2 2342 2448 -866 1827 134 98 128 chr13 34694305 34694806 -67178363 + LTR21A LTR ERV1 1 486 -19 778 274 225 18 chr13 34694810 34695452 -67177717 + L2 LINE L2 2454 3311 -2 183 318 0 0 chr13 34695876 34695920 -67177249 - L2 LINE L2 -15 3298 3255 21 0 0 0 chr13 34696985 34697006 -67176163 + AT_rich Low_complexity Low_complexity 1 21 0 1668 152 10 35 chr13 34697046 34697359 -67175810 + AluJo SINE Alu 1 306 0 597 233 42 62 chr13 34697829 34698022 -67175147 - MER5A DNA MER1_type 0 189 1 839 196 0 20 chr13 34698254 34698402 -67174767 - FRAM SINE Alu -30 146 2 1029 169 0 0 chr13 34698426 34698586 -67174583 - AluSg/x SINE Alu -16 294 135 3562 195 69 49 chr13 34699128 34700093 -67173076 + L1MC4 LINE L1 6496 7480 -562 1643 173 29 0 chr13 34700308 34700615 -67172554 + AluJb SINE Alu 1 315 0 2287 126 118 65 chr13 34701308 34701816 -67171353 - L1MB7 LINE L1 -19 6165 5631 1977 150 10 0 chr13 34702237 34702530 -67170639 + AluJo SINE Alu 1 296 -16 2313 63 0 0 chr13 34702703 34702989 -67170180 - L1PA7 LINE L1 -13 6141 5856 5578 80 22 1 chr13 34702989 34703750 -67169419 + L1P LINE L1 3497 4273 -1873 450 310 129 25 chr13 34705604 34706085 -67167084 - L1M4 LINE L1 -1857 4289 3759 1032 119 40 0 chr13 34706198 34706347 -67166822 - MER30 DNA MER1_type 0 230 76 531 95 0 0 chr13 34706347 34706421 -67166748 + MADE1 DNA Mariner 2 75 -5 280 56 0 0 chr13 34706433 34706469 -67166700 - MER30 DNA MER1_type -194 36 1 1745 205 85 17 chr13 34706498 34706971 -67166198 + MLT1D LTR MaLR 1 505 0 453 236 143 33 chr13 34707814 34707996 -67165173 - L3b LINE CR1 -152 1431 1230 29 0 0 0 chr13 34708162 34708191 -67164978 + AT_rich Low_complexity Low_complexity 1 29 0 375 286 87 36 chr13 34708560 34708756 -67164413 - MIR SINE MIR -50 212 7 382 143 0 16 chr13 34708824 34708887 -67164282 + MER97a DNA MER1_type? 118 179 -715 299 224 103 19 chr13 34709012 34709119 -67164050 - MIR SINE MIR -3 259 144 664 300 58 19 chr13 34709704 34710096 -67163073 + MER20B DNA MER1_type 12 456 -327 390 286 143 24 chr13 34710896 34711106 -67162063 + MER112 DNA MER1_type 15 249 -11 29 0 0 0 chr13 34711404 34711433 -67161736 + AT_rich Low_complexity Low_complexity 1 29 0 1838 158 24 3 chr13 34711614 34711905 -67161264 - AluJo SINE Alu -15 297 1 31 68 0 0 chr13 34711926 34711985 -67161184 + AT_rich Low_complexity Low_complexity 1 59 0 14204 173 31 18 chr13 34712525 34714464 -67158705 + L1M1 LINE L1 83 2069 -4780 1875 109 18 7 chr13 34714464 34714738 -67158431 + AluSq SINE Alu 36 312 -1 14204 173 31 18 chr13 34714738 34715560 -67157609 + L1M1 LINE L1 2069 2879 -3970 36432 76 9 10 chr13 34715560 34720798 -67152371 + L1PA6 LINE L1 1 5235 -911 40657 33 22 2 chr13 34720799 34726821 -67146348 + L1PA2 LINE L1 13 6152 -3 6784 63 8 5 chr13 34726832 34727759 -67145410 + L1PA6 LINE L1 5225 6154 0 13492 167 41 14 chr13 34727774 34728370 -67144799 + L1M1 LINE L1 2865 3443 -3562 2265 93 3 3 chr13 34728370 34728670 -67144499 - AluSc SINE Alu -9 300 1 13492 167 41 14 chr13 34728670 34729097 -67144072 + L1M1 LINE L1 3443 3857 -3148 794 183 0 0 chr13 34729097 34729228 -67143941 + FLAM_A SINE Alu 1 131 -2 13492 167 41 14 chr13 34729228 34731757 -67141412 + L1M1 LINE L1 3857 6511 -494 2273 108 0 0 chr13 34732583 34732880 -67140289 - AluSx SINE Alu -15 297 1 444 269 110 59 chr13 34733896 34734497 -67138672 + L1MC4a LINE L1 5303 5786 -335 483 18 0 0 chr13 34735300 34735356 -67137813 + (TAG)n Simple_repeat Simple_repeat 1 56 0 791 139 0 0 chr13 34735357 34735472 -67137697 - FLAM_C SINE Alu -18 115 1 197 309 96 11 chr13 34735554 34735648 -67137521 + MIR3 SINE MIR 64 165 -43 767 155 65 0 chr13 34735675 34735843 -67137326 - L1MD3 LINE L1 0 7995 7817 34 65 0 0 chr13 34735904 34735966 -67137203 + AT_rich Low_complexity Low_complexity 1 62 0 743 158 0 24 chr13 34735966 34736093 -67137076 - FLAM_C SINE Alu -9 124 1 2081 133 0 27 chr13 34736167 34736468 -67136701 + AluSx SINE Alu 1 293 -19 295 271 86 57 chr13 34737271 34737411 -67135758 - MIR SINE MIR -71 191 48 271 287 75 0 chr13 34738132 34738226 -67134943 - MIR SINE MIR -105 157 57 501 291 90 85 chr13 34738307 34738685 -67134484 + L2 LINE L2 2888 3267 -5 1560 197 17 14 chr13 34738986 34739280 -67133889 - AluJo SINE Alu -17 295 1 369 281 187 29 chr13 34739409 34739580 -67133589 + MIR SINE MIR 28 225 -37 247 250 65 21 chr13 34740142 34740324 -67132845 + L2 LINE L2 3032 3311 -2 21 57 0 0 chr13 34740589 34740624 -67132545 + AT_rich Low_complexity Low_complexity 1 35 0 1950 147 0 0 chr13 34741703 34741995 -67131174 + AluSx SINE Alu 14 305 -7 440 155 21 6 chr13 34742208 34742447 -67130722 + AluJo SINE Alu 1 293 -19 21 36 0 0 chr13 34743091 34743119 -67130050 + AT_rich Low_complexity Low_complexity 1 28 0 2790 150 87 93 chr13 34743788 34744180 -67128989 + L1MB7 LINE L1 4947 5340 -844 2437 70 0 26 chr13 34744180 34744493 -67128676 + AluSg SINE Alu 1 305 -5 2790 150 87 93 chr13 34744493 34745272 -67127897 + L1MB7 LINE L1 5340 6122 -62 240 190 139 0 chr13 34745273 34745352 -67127817 + L1MB8 LINE L1 6077 6166 -12 429 255 189 36 chr13 34745458 34745654 -67127515 + MIR SINE MIR 3 228 -34 22 35 0 0 chr13 34746016 34746045 -67127124 + AT_rich Low_complexity Low_complexity 1 29 0 478 192 20 10 chr13 34746104 34746203 -67126966 + MER5A DNA MER1_type 4 103 -86 981 313 163 25 chr13 34746311 34746706 -67126463 - L2 LINE L2 -2 3270 2931 733 224 0 114 chr13 34746706 34746951 -67126218 + MER20 DNA MER1_type 2 218 -1 981 313 163 25 chr13 34746951 34747461 -67125708 - L2 LINE L2 -341 2931 2240 256 282 51 0 chr13 34747599 34747677 -67125492 + U4 snRNA snRNA 1 82 -63 2186 115 10 0 chr13 34748274 34748569 -67124600 + AluSx SINE Alu 6 303 -9 252 364 20 33 chr13 34749639 34749790 -67123379 - LTR67 LTR ERVL -315 242 94 677 300 32 62 chr13 34750277 34750757 -67122412 - L2 LINE L2 -136 3177 2714 589 245 51 51 chr13 34750762 34750958 -67122211 + MER20 DNA MER1_type 24 219 0 2415 237 228 52 chr13 34750965 34751155 -67122014 - L2 LINE L2 -603 2711 2556 2329 104 0 0 chr13 34751155 34751452 -67121717 + AluSg SINE Alu 1 297 -13 2415 237 228 52 chr13 34751452 34752365 -67120804 - L2 LINE L2 -758 2556 1413 853 247 43 0 chr13 34752529 34752715 -67120454 - MIR SINE MIR -59 203 10 965 181 10 10 chr13 34752861 34753060 -67120109 + L1MB3 LINE L1 5985 6183 0 371 282 97 32 chr13 34753550 34753674 -67119495 + L2 LINE L2 3180 3311 -2 29805 99 12 21 chr13 34754837 34761153 -67112016 - L1PA7 LINE L1 0 6469 128 1793 164 59 0 chr13 34761473 34761796 -67111373 + MER2 DNA MER2_type 1 342 -2 326 292 0 0 chr13 34762188 34762260 -67110909 - L2 LINE L2 -13 3259 3188 877 275 191 14 chr13 34762264 34762534 -67110635 + L2 LINE L2 2805 3026 -287 2228 87 31 0 chr13 34762534 34762821 -67110348 - AluSx SINE Alu -15 297 2 877 275 191 14 chr13 34762821 34762975 -67110194 + L2 LINE L2 3026 3304 -9 215 343 15 0 chr13 34763241 34763308 -67109861 + L2 LINE L2 3186 3253 -19 223 330 204 23 chr13 34763349 34763613 -67109556 - L2 LINE L2 -1230 2084 1773 281 308 41 82 chr13 34763636 34763782 -67109387 - MIR3 SINE MIR -63 145 6 233 261 130 72 chr13 34764928 34765066 -67108103 - MER5A DNA MER1_type -37 152 7 487 292 3 43 chr13 34766054 34766312 -67106857 + GA-rich Low_complexity Low_complexity 1 247 0 22 0 0 0 chr13 34766468 34766490 -67106679 + AT_rich Low_complexity Low_complexity 1 22 0 585 218 223 32 chr13 34766501 34766689 -67106480 - MIR SINE MIR -25 237 14 2415 87 0 0 chr13 34767591 34767891 -67105278 - AluSx SINE Alu -12 300 1 22 35 0 0 chr13 34769600 34769629 -67103540 + AT_rich Low_complexity Low_complexity 1 29 0 205 280 182 7 chr13 34769960 34770103 -67103066 + MIR SINE MIR 94 261 -1 371 253 272 0 chr13 34770130 34770292 -67102877 - MIR SINE MIR 0 262 57 304 327 201 38 chr13 34770594 34771382 -67101787 + L2 LINE L2 102 1017 -2297 232 248 99 10 chr13 34772397 34772498 -67100671 - L1ME LINE L1 -296 5874 5765 180 0 0 0 chr13 34772541 34772561 -67100608 + (T)n Simple_repeat Simple_repeat 1 20 0 1182 252 102 62 chr13 34772564 34772724 -67100445 - L2 LINE L2 -1 3312 3160 1595 202 14 7 chr13 34772724 34773021 -67100148 + AluJb SINE Alu 1 299 -13 1182 252 102 62 chr13 34773021 34773457 -67099712 - L2 LINE L2 -153 3160 2687 799 196 54 34 chr13 34773458 34773662 -67099507 + L1ME LINE L1 5527 5734 -436 957 218 30 26 chr13 34773663 34773897 -67099272 - L2 LINE L2 -928 2386 2152 637 247 116 26 chr13 34773931 34774201 -67098968 - L1ME LINE L1 -455 5715 5414 596 280 85 30 chr13 34774216 34774616 -67098553 - L1ME LINE L1 -820 5326 4905 2162 69 7 31 chr13 34774769 34775090 -67098079 - AluY SINE Alu 0 314 1 776 311 227 27 chr13 34775105 34775923 -67097246 + L2 LINE L2 1836 2817 -497 973 238 82 0 chr13 34776085 34776316 -67096853 + MIR SINE MIR 2 251 -11 595 143 0 0 chr13 34777213 34777304 -67095865 + FLAM_C SINE Alu 17 107 -36 198 0 0 0 chr13 34777518 34777540 -67095629 + (A)n Simple_repeat Simple_repeat 1 22 0 254 268 14 0 chr13 34778970 34779041 -67094128 + MER94 DNA DNA 1 72 -62 575 193 179 47 chr13 34779385 34779659 -67093510 + MER114 LTR ERV 1 310 -338 319 300 97 74 chr13 34782181 34782615 -67090554 + L2 LINE L2 2726 3171 -101 21 0 0 0 chr13 34782799 34782820 -67090349 + AT_rich Low_complexity Low_complexity 1 21 0 718 92 0 0 chr13 34783845 34783943 -67089226 - HY3 scRNA scRNA -2 99 2 29 28 0 0 chr13 34784175 34784211 -67088958 + AT_rich Low_complexity Low_complexity 1 36 0 306 305 34 42 chr13 34784674 34784792 -67088377 + L2 LINE L2 3182 3298 -15 835 276 60 4 chr13 34785697 34785929 -67087240 + MIR SINE MIR 17 261 -1 200 200 60 0 chr13 34786203 34786253 -67086916 - MER5B DNA MER1_type -99 79 27 1428 88 49 0 chr13 34786728 34786932 -67086237 + MLT2A1 LTR ERVL 1 214 -230 7871 60 14 0 chr13 34786932 34787907 -67085262 + HERVL LTR ERVL 2891 3879 -1775 289 143 0 0 chr13 34787907 34787956 -67085213 - L1M4c LINE L1 -5426 958 910 2865 157 44 32 chr13 34787983 34788338 -67084831 - L1M4c LINE L1 -5455 929 563 1674 144 50 22 chr13 34788338 34788615 -67084554 - AluJo SINE Alu -27 285 1 2865 157 44 32 chr13 34788615 34788844 -67084325 - L1M4c LINE L1 -5821 563 338 2148 107 27 3 chr13 34788894 34789194 -67083975 - AluSg SINE Alu -3 307 1 403 258 70 103 chr13 34789194 34789454 -67083715 + MLT1J LTR MaLR 194 446 -65 1751 219 93 32 chr13 34789454 34790042 -67083127 - MLT1E3 LTR MaLR 0 624 1 1788 137 29 7 chr13 34790117 34790423 -67082746 - L1MB3 LINE L1 0 6183 5871 833 140 0 29 chr13 34790470 34790606 -67082563 + FLAM_C SINE Alu 2 133 0 558 196 8 145 chr13 34790608 34790843 -67082326 - L2 LINE L2 -1230 2084 1882 260 128 21 21 chr13 34791097 34791144 -67082025 - L2 LINE L2 0 3313 3267 22 35 0 0 chr13 34792099 34792128 -67081041 + AT_rich Low_complexity Low_complexity 1 29 0 412 274 65 91 chr13 34793008 34793153 -67080016 - L3 LINE CR1 -1 1576 1440 2215 121 3 0 chr13 34793153 34793458 -67079711 + AluSx SINE Alu 1 306 -6 412 274 65 91 chr13 34793458 34793575 -67079594 - L3 LINE CR1 -137 1440 1321 205 359 185 0 chr13 34795417 34795612 -67077557 - L3 LINE CR1 -2 1575 1345 526 115 0 23 chr13 34795612 34795699 -67077470 + AluSc SINE Alu 1 85 -224 356 301 165 37 chr13 34795709 34795981 -67077188 - L3 LINE CR1 -355 1222 916 398 318 64 88 chr13 34796875 34796936 -67076233 - L3 LINE CR1 -728 849 788 2213 108 0 3 chr13 34796936 34797232 -67075937 - AluSx SINE Alu -17 295 1 398 318 64 88 chr13 34797232 34797466 -67075703 - L3 LINE CR1 -789 788 561 190 268 24 0 chr13 34797865 34797906 -67075263 - MIR SINE MIR -176 86 45 226 309 15 29 chr13 34798302 34798370 -67074799 - L2 LINE L2 -5 3267 3201 1517 183 76 0 chr13 34799238 34799500 -67073669 + AluJo SINE Alu 1 282 -30 227 238 24 36 chr13 34799611 34799695 -67073474 - L1MEd LINE L1 -6001 118 36 413 335 71 71 chr13 34799723 34800105 -67073064 + L2 LINE L2 2872 3253 -19 1485 103 0 0 chr13 34801540 34801754 -67071415 - L1PA8 LINE L1 -14 6158 5945 296 208 113 66 chr13 34801919 34802025 -67071144 - MER94 DNA DNA -20 114 4 1733 171 18 0 chr13 34802053 34802333 -67070836 - AluJo SINE Alu -21 291 7 22 80 0 0 chr13 34802473 34802523 -67070646 + AT_rich Low_complexity Low_complexity 1 50 0 640 220 39 114 chr13 34802646 34802790 -67070379 - MIR SINE MIR -7 255 137 2322 99 0 0 chr13 34802790 34803083 -67070086 + AluSx SINE Alu 1 293 -19 640 220 39 114 chr13 34803083 34803193 -67069976 - MIR SINE MIR -125 137 20 808 268 30 5 chr13 34803223 34803421 -67069748 + MER20 DNA MER1_type 4 206 -13 207 0 0 0 chr13 34803508 34803531 -67069638 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 266 309 48 0 chr13 34804503 34804629 -67068540 - L1ME4a LINE L1 -11 6110 5979 238 259 37 46 chr13 34804739 34804847 -67068322 - L1ME4a LINE L1 -2007 5801 5695 1125 285 99 62 chr13 34805124 34806310 -67066859 - L1MEd LINE L1 -1009 1481 143 237 267 35 0 chr13 34806327 34806413 -67066756 - L1MEd LINE L1 -6027 92 4 894 133 0 21 chr13 34806714 34806857 -67066312 + MLT1B LTR MaLR 4 143 -247 1544 186 29 26 chr13 34806857 34807294 -67065875 - LTR2B LTR ERV1 0 490 1 1173 189 15 64 chr13 34807294 34807553 -67065616 + MLT1B LTR MaLR 140 385 -5 345 301 58 0 chr13 34807791 34807894 -67065275 + L1MC4a LINE L1 6758 6866 -942 4354 169 42 36 chr13 34807897 34808246 -67064923 + L1MB5 LINE L1 4874 5219 -955 2135 126 0 7 chr13 34808246 34808556 -67064613 - AluSx SINE Alu -4 308 1 4354 169 42 36 chr13 34808556 34809162 -67064007 + L1MB5 LINE L1 5219 5828 -346 2389 91 3 0 chr13 34809162 34809469 -67063700 + AluSx SINE Alu 1 308 -4 4354 169 42 36 chr13 34809469 34809811 -67063358 + L1MB5 LINE L1 5828 6166 -8 904 188 0 0 chr13 34809918 34810062 -67063107 - FRAM SINE Alu -21 155 12 3395 111 2 18 chr13 34810182 34810694 -67062475 - L1PA13 LINE L1 -101 6062 5559 28 0 0 0 chr13 34810754 34810782 -67062387 + AT_rich Low_complexity Low_complexity 1 28 0 1410 156 12 97 chr13 34810782 34811102 -67062067 - AluJb SINE Alu -9 293 1 255 191 16 63 chr13 34811314 34811377 -67061792 + Charlie4 DNA MER1_type 1 60 -1901 845 86 86 0 chr13 34811504 34811632 -67061537 + MER85 DNA T2_type 1 139 0 21 36 0 0 chr13 34811969 34811997 -67061172 + AT_rich Low_complexity Low_complexity 1 28 0 1124 71 13 0 chr13 34812306 34812460 -67060709 + L1PA7 LINE L1 5999 6154 0 464 297 87 35 chr13 34812479 34812708 -67060461 + MIR SINE MIR 20 260 -2 266 271 73 10 chr13 34812818 34812914 -67060255 + MARNA DNA Mariner 157 258 -328 405 289 60 27 chr13 34813564 34813713 -67059456 - L2 LINE L2 -8 3305 3152 257 247 136 25 chr13 34813845 34813926 -67059243 + MLT1H1 LTR MaLR 179 268 -287 402 150 218 0 chr13 34814116 34814263 -67058906 - Charlie5 DNA MER1_type -62 2550 2372 5782 137 29 29 chr13 34814279 34814698 -67058471 - L1MA4 LINE L1 -35 6265 5847 1796 171 3 7 chr13 34814698 34815007 -67058162 - AluJo SINE Alu 0 312 5 5782 137 29 29 chr13 34815007 34815657 -67057512 - L1MA4 LINE L1 -453 5847 5194 855 154 8 0 chr13 34815657 34815787 -67057382 - FLAM_C SINE Alu -1 132 2 5782 137 29 29 chr13 34815787 34816138 -67057031 - L1MA4 LINE L1 -1106 5194 4844 540 188 62 0 chr13 34816203 34816315 -67056854 - L1MA4 LINE L1 -1286 4860 4742 * 696 168 34 0 chr13 34816305 34816454 -67056715 - L1MA4 LINE L1 -1677 4469 4316 24 0 0 0 chr13 34816454 34816478 -67056691 + AT_rich Low_complexity Low_complexity 1 24 0 894 122 0 0 chr13 34816480 34816595 -67056574 - FLAM_C SINE Alu -28 115 1 1251 120 0 0 chr13 34816595 34816795 -67056374 - L1MA4 LINE L1 -1815 4331 4132 673 154 48 0 chr13 34816798 34816922 -67056247 - MER33 DNA MER1_type -259 65 1 1469 127 94 22 chr13 34817218 34817485 -67055684 + MER46B DNA MER2_type 1 161 -75 211 93 47 0 chr13 34817490 34817533 -67055636 + (TA)n Simple_repeat Simple_repeat 2 46 0 320 225 56 11 chr13 34817533 34817622 -67055547 + L1MC4 LINE L1 6612 6704 -1338 212 143 24 0 chr13 34817622 34817664 -67055505 + (TA)n Simple_repeat Simple_repeat 1 43 0 399 191 12 0 chr13 34817673 34817757 -67055412 + MER46B DNA MER2_type 147 231 -5 1131 135 22 44 chr13 34817901 34818130 -67055039 - L1PB1 LINE L1 -2 6149 5926 590 244 58 13 chr13 34818749 34818905 -67054264 + MIR SINE MIR 82 244 -18 183 279 23 0 chr13 34819005 34819048 -67054121 + L2 LINE L2 3217 3260 -12 24 0 0 0 chr13 34820004 34820028 -67053141 + AT_rich Low_complexity Low_complexity 1 24 0 17831 31 3 3 chr13 34821066 34823989 -67049180 + L1PA3 LINE L1 3201 6121 -34 369 263 12 23 chr13 34823989 34824160 -67049009 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 602 14 0 0 chr13 34824160 34824231 -67048938 + L1PA3 LINE L1 6077 6147 -8 1589 195 11 7 chr13 34824300 34824582 -67048587 - AluJb SINE Alu -29 283 1 1286 151 15 5 chr13 34824741 34824947 -67048222 - AluJb SINE Alu -104 208 1 3588 108 17 17 chr13 34824947 34825539 -67047630 - MER4B LTR ERV1 -21 758 1 1255 160 14 5 chr13 34825539 34825752 -67047417 + AluJo SINE Alu 90 304 -8 340 319 98 39 chr13 34825753 34826007 -67047162 + L1ME3A LINE L1 1528 1796 -4588 284 79 0 0 chr13 34826298 34826336 -67046833 - MER4E LTR ERV1 -99 667 630 4095 166 53 25 chr13 34826623 34827483 -67045686 + MER4D LTR ERV1 1 593 -17 1006 186 26 0 chr13 34827487 34827680 -67045489 + L1PBa LINE L1 3 200 -6663 6336 118 22 6 chr13 34827680 34829196 -67043973 + L1PBa LINE L1 634 2315 -4548 617 263 73 105 chr13 34829342 34829772 -67043397 + L1ME3A LINE L1 4618 5019 -1363 2065 74 8 0 chr13 34829772 34830028 -67043141 + AluY SINE Alu 35 292 -19 617 263 73 105 chr13 34830028 34830281 -67042888 + L1ME3A LINE L1 5019 5279 -1103 1060 201 0 6 chr13 34830346 34830525 -67042644 - AluJb SINE Alu -22 290 113 329 201 24 110 chr13 34830551 34830617 -67042552 + L1ME3A LINE L1 5359 5429 -953 2282 98 0 3 chr13 34830617 34830914 -67042255 + AluSx SINE Alu 2 297 -15 329 201 24 110 chr13 34830914 34831011 -67042158 + L1ME3A LINE L1 5429 5508 -874 445 273 54 41 chr13 34831051 34831293 -67041876 + L1ME3A LINE L1 5942 6186 -220 343 256 62 67 chr13 34831359 34831554 -67041615 + L1ME3A LINE L1 6198 6391 -15 2376 236 30 20 chr13 34831594 34832200 -67040969 + MER74B LTR ERVL 1 612 -10 21 0 0 0 chr13 34832214 34832235 -67040934 + AT_rich Low_complexity Low_complexity 1 21 0 3751 147 86 15 chr13 34832577 34833312 -67039857 + L1MC2 LINE L1 5545 6331 -13 1825 154 0 26 chr13 34834430 34834735 -67038434 + AluSg SINE Alu 1 297 -13 410 47 16 109 chr13 34835065 34835193 -67037976 + (TTTCC)n Simple_repeat Simple_repeat 3 118 0 1938 154 10 0 chr13 34835197 34835495 -67037674 - AluSx SINE Alu -11 301 1 12467 180 28 22 chr13 34836899 34839752 -67033417 - L1PB1 LINE L1 0 6151 3273 2168 125 0 0 chr13 34839752 34840057 -67033112 - AluSx SINE Alu 0 312 8 12467 180 28 22 chr13 34840057 34840881 -67032288 - L1PB1 LINE L1 -2878 3273 2456 1565 181 31 21 chr13 34841027 34841315 -67031854 - AluJb SINE Alu -21 291 1 584 290 94 45 chr13 34841676 34841967 -67031202 + L2 LINE L2 2966 3276 -37 2286 109 0 6 chr13 34841967 34842280 -67030889 - AluSq SINE Alu -2 311 1 584 290 94 45 chr13 34842280 34842319 -67030850 + L2 LINE L2 3276 3312 -1 392 287 19 9 chr13 34842356 34842464 -67030705 - L2 LINE L2 0 3272 3164 2263 102 3 0 chr13 34843800 34844104 -67029065 + AluSq SINE Alu 7 311 -2 1248 157 144 0 chr13 34845192 34845421 -67027748 - MLT1B LTR MaLR -2 388 127 1552 155 44 25 chr13 34845439 34846146 -67027023 + LTR1B LTR ERV1 1 826 0 459 65 0 117 chr13 34846146 34846222 -67026947 - MLT1B LTR MaLR -300 90 24 451 167 0 0 chr13 34846502 34846580 -67026589 + MIR SINE MIR 164 241 -21 1047 201 35 15 chr13 34847347 34847546 -67025623 + MER3 DNA MER1_type 1 203 -6 365 298 0 19 chr13 34848028 34848132 -67025037 - L2 LINE L2 0 3272 3171 24 53 0 0 chr13 34850037 34850075 -67023094 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 34851086 34851116 -67022053 + AT_rich Low_complexity Low_complexity 1 30 0 489 220 21 14 chr13 34851132 34851273 -67021896 - L1MB8 LINE L1 -6 6408 6267 1818 29 0 0 chr13 34851284 34851490 -67021679 - AluY SINE Alu -18 293 88 7727 208 66 35 chr13 34851492 34852636 -67020533 - L1MB8 LINE L1 -280 6140 5033 2047 134 17 3 chr13 34852636 34852928 -67020241 - AluSx SINE Alu -14 298 3 7727 208 66 35 chr13 34852928 34854308 -67018861 - L1MB8 LINE L1 -1387 5033 3471 228 135 0 0 chr13 34854308 34854345 -67018824 - tRNA-Gly-GGA tRNA tRNA -36 39 3 7727 208 66 35 chr13 34854345 34854847 -67018322 - L1MB8 LINE L1 -2949 3471 2986 1151 191 15 5 chr13 34854847 34855051 -67018118 + AluJo SINE Alu 87 292 -20 674 206 76 45 chr13 34855058 34855492 -67017677 - L1MB8 LINE L1 -3391 2991 2478 1409 174 76 14 chr13 34855492 34855767 -67017402 + AluJo SINE Alu 1 292 -20 674 206 76 45 chr13 34855767 34855803 -67017366 - L1MB8 LINE L1 -3904 2478 2445 1064 93 0 7 chr13 34855805 34855944 -67017225 - AluSg/x SINE Alu -17 293 156 483 181 0 0 chr13 34856089 34856161 -67017008 - AluS SINE Alu -238 75 4 621 262 67 41 chr13 34856163 34856628 -67016541 - L1MB8 LINE L1 -3942 2442 1966 325 308 119 13 chr13 34856893 34857052 -67016117 + MIR3 SINE MIR 31 206 -2 1698 144 0 4 chr13 34857337 34857609 -67015560 + AluJo SINE Alu 48 318 0 310 309 189 24 chr13 34858019 34858352 -67014817 - L1ME LINE L1 -366 5804 5417 4355 173 24 14 chr13 34859271 34860178 -67012991 - L1 LINE L1 -2068 4078 3163 38 258 0 0 chr13 34860477 34860566 -67012603 + AT_rich Low_complexity Low_complexity 1 89 0 31 26 0 0 chr13 34861069 34861107 -67012062 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 34861543 34861571 -67011598 + AT_rich Low_complexity Low_complexity 1 28 0 2237 241 28 31 chr13 34862746 34863352 -67009817 + L1M4 LINE L1 5 608 -5934 498 296 73 57 chr13 34863618 34863865 -67009304 + MIR SINE MIR 11 261 -1 624 250 128 0 chr13 34863949 34864121 -67009048 + MLT1I LTR MaLR 214 407 -2 283 284 83 43 chr13 34864584 34864908 -67008261 + L1M4 LINE L1 4009 4345 -2299 38028 62 25 2 chr13 34864912 34870926 -67002243 + L1PA7 LINE L1 2 6154 0 1561 226 101 58 chr13 34871662 34871824 -67001345 + L1ME LINE L1 2153 2307 -4337 1628 169 14 32 chr13 34871824 34872108 -67001061 + AluJb SINE Alu 2 280 -32 1561 226 101 58 chr13 34872108 34872757 -67000412 + L1ME LINE L1 2307 2927 -3717 2077 142 0 6 chr13 34872757 34873068 -67000101 + AluJb SINE Alu 1 309 -3 1561 226 101 58 chr13 34873068 34873114 -67000055 + L1ME LINE L1 2927 2970 -3674 2052 146 36 11 chr13 34873114 34873471 -66999698 - MER47A DNA MER2_type 0 366 1 1561 226 101 58 chr13 34873471 34873518 -66999651 + L1ME LINE L1 2970 3062 -3582 1166 200 92 19 chr13 34873531 34873915 -66999254 + L1ME LINE L1 5509 5919 -743 389 225 12 50 chr13 34873939 34874099 -66999070 + L1MA10 LINE L1 6180 6333 -1 269 272 43 22 chr13 34874664 34874756 -66998413 - MIR SINE MIR -68 194 101 419 265 71 0 chr13 34875157 34875255 -66997914 - L2 LINE L2 0 3272 3168 28 29 0 0 chr13 34875295 34875330 -66997839 + AT_rich Low_complexity Low_complexity 1 35 0 371 319 48 59 chr13 34875600 34875873 -66997296 - L2 LINE L2 -556 2758 2489 217 210 16 16 chr13 34877574 34877636 -66995533 + T-rich Low_complexity Low_complexity 4 65 0 2297 97 0 19 chr13 34877932 34878242 -66994927 - AluSg SINE Alu -6 304 1 2011 234 106 14 chr13 34879485 34880152 -66993017 + L1MC4a LINE L1 7079 7807 -1 201 306 0 48 chr13 34880928 34880990 -66992179 - MER5A DNA MER1_type -130 59 1 258 169 13 52 chr13 34881088 34881165 -66992004 + L1ME LINE L1 6309 6382 -237 764 255 64 33 chr13 34881353 34881682 -66991487 - MLT1J1 LTR MaLR -22 424 86 23 0 0 0 chr13 34881752 34881775 -66991394 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 34881910 34881933 -66991236 + (TG)n Simple_repeat Simple_repeat 2 24 0 261 83 0 0 chr13 34882226 34882262 -66990907 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 432 307 157 11 chr13 34883047 34883314 -66989855 - LTR16A LTR ERVL -88 362 57 2313 112 0 13 chr13 34883423 34883735 -66989434 - AluSx SINE Alu -2 310 3 574 279 95 52 chr13 34885296 34885706 -66987463 + MLT1J LTR MaLR 1 526 -89 27 0 0 0 chr13 34885758 34885785 -66987384 + AT_rich Low_complexity Low_complexity 1 27 0 268 167 45 0 chr13 34885808 34885874 -66987295 + CT-rich Low_complexity Low_complexity 2 70 0 233 275 75 20 chr13 34886232 34886432 -66986737 + L1ME4a LINE L1 5754 5964 -157 715 258 107 9 chr13 34886795 34887028 -66986141 + MLT1H1 LTR MaLR 246 501 -54 2477 43 26 0 chr13 34887284 34887586 -66985583 + AluY SINE Alu 1 310 -1 2101 99 0 0 chr13 34889493 34889765 -66983404 + AluSx SINE Alu 1 272 -40 341 105 0 0 chr13 34890373 34890430 -66982739 + Alu SINE Alu 243 299 -3 318 232 21 11 chr13 34890638 34890733 -66982436 + LTR33A LTR ERVL 405 500 -23 378 288 59 33 chr13 34890950 34891103 -66982066 - MIR SINE MIR -71 191 35 2247 189 33 29 chr13 34891103 34891585 -66981584 + MER31A LTR ERV1 2 485 0 2287 102 0 0 chr13 34892126 34892420 -66980749 - AluSg SINE Alu -16 294 1 2053 149 0 0 chr13 34892690 34892991 -66980178 - AluSx SINE Alu -10 302 2 22 35 0 0 chr13 34893509 34893538 -66979631 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 34893704 34893728 -66979441 + AT_rich Low_complexity Low_complexity 1 24 0 382 341 81 17 chr13 34894419 34894592 -66978577 + MER5A DNA MER1_type 5 188 -1 2430 97 7 0 chr13 34894768 34895077 -66978092 - AluSp SINE Alu -2 311 1 514 250 138 40 chr13 34895481 34895705 -66977464 - MIR SINE MIR -13 249 4 209 296 30 91 chr13 34895901 34896035 -66977134 + L2 LINE L2 1720 1840 -1474 2024 188 31 74 chr13 34896035 34896577 -66976592 - LTR40a LTR ERVL 0 519 1 209 296 30 91 chr13 34896577 34896641 -66976528 + L2 LINE L2 1840 1906 -1408 1397 314 131 51 chr13 34896697 34897932 -66975237 - L2 LINE L2 -6 3266 1931 181 261 62 46 chr13 34897936 34898001 -66975168 - MIR SINE MIR -118 144 79 299 270 20 20 chr13 34898262 34898362 -66974807 + MER5B DNA MER1_type 43 142 -36 305 272 59 101 chr13 34900335 34900504 -66972665 - MER5B DNA MER1_type 0 178 17 184 232 125 0 chr13 34901220 34901276 -66971893 - L3b LINE CR1 -244 1339 1277 268 340 119 5 chr13 34901288 34901473 -66971696 - MIR SINE MIR -10 252 47 518 302 114 20 chr13 34901490 34901841 -66971328 + L1ME4a LINE L1 5736 6119 -2 266 316 105 30 chr13 34902067 34902200 -66970969 - MIR3 SINE MIR -63 145 3 206 225 0 28 chr13 34903120 34903191 -66969978 + G-rich Low_complexity Low_complexity 3 71 0 24 53 0 0 chr13 34903274 34903312 -66969857 + AT_rich Low_complexity Low_complexity 1 38 0 438 171 34 77 chr13 34903463 34903580 -66969589 - L1PB4 LINE L1 -7 6149 6038 362 317 92 32 chr13 34904082 34904331 -66968838 - L2 LINE L2 -24 3248 2985 495 329 30 0 chr13 34904509 34904673 -66968496 - L2 LINE L2 -572 2742 2574 210 313 24 24 chr13 34904965 34905048 -66968121 - MIR SINE MIR -149 113 31 433 237 26 9 chr13 34906588 34906702 -66966467 - MIR SINE MIR 0 262 147 29 28 0 0 chr13 34906716 34906752 -66966417 + AT_rich Low_complexity Low_complexity 1 36 0 837 145 0 15 chr13 34906752 34906883 -66966286 - FLAM_C SINE Alu -4 129 1 325 284 71 16 chr13 34906888 34907015 -66966154 - MIR SINE MIR -58 150 17 392 231 19 28 chr13 34907184 34907292 -66965877 - MIR SINE MIR -90 172 66 14045 202 28 19 chr13 34907358 34913336 -66959833 - L1MA5A LINE L1 -10 6929 890 21 0 0 0 chr13 34914220 34914241 -66958928 + AT_rich Low_complexity Low_complexity 1 21 0 * 28747 114 8 64 chr13 34914233 34914245 -66958924 - L1PA3 LINE L1 0 6155 6144 5240 64 0 3 chr13 34914245 34914920 -66958249 - L1PA7 LINE L1 -6 6148 5476 28747 114 8 64 chr13 34914920 34918238 -66954931 - L1PA3 LINE L1 -11 6144 3375 2320 117 3 0 chr13 34918238 34918547 -66954622 - AluY SINE Alu -1 310 1 28747 114 8 64 chr13 34918547 34921734 -66951435 - L1PA3 LINE L1 -2780 3375 12 285 198 231 58 chr13 34921734 34921855 -66951314 - MIR3 SINE MIR -50 158 17 246 264 41 91 chr13 34922392 34922513 -66950656 + MIR SINE MIR 93 207 -55 193 283 163 43 chr13 34923085 34923177 -66949992 - MIR SINE MIR -85 123 21 1090 119 0 19 chr13 34923500 34923660 -66949509 - AluSx SINE Alu -12 300 144 1047 85 8 0 chr13 34923802 34923931 -66949238 - AluSx SINE Alu -173 139 10 468 350 159 15 chr13 34923962 34924836 -66948333 + L2 LINE L2 1978 2977 -337 446 237 37 104 chr13 34925070 34925323 -66947846 + MIR SINE MIR 9 240 -22 330 132 0 0 chr13 34926400 34926453 -66946716 + (T)n Simple_repeat Simple_repeat 1 53 0 5633 113 15 19 chr13 34928356 34929447 -66943722 - L1PA13 LINE L1 -3 6160 5080 1594 160 8 37 chr13 34929580 34929848 -66943321 - AluJo SINE Alu -31 281 22 238 224 106 47 chr13 34930210 34930295 -66942874 - MIR SINE MIR -20 242 153 1784 169 39 74 chr13 34930303 34930666 -66942503 + MLT1C LTR MaLR 1 344 -123 2595 117 38 17 chr13 34930666 34931084 -66942085 - MSTA LTR MaLR 0 428 2 1784 169 39 74 chr13 34931084 34931204 -66941965 + MLT1C LTR MaLR 344 467 0 300 229 76 19 chr13 34931546 34931651 -66941518 + MER103 DNA DNA 54 164 -2 519 236 94 42 chr13 34931931 34932122 -66941047 - MER90 LTR ERV1 -1 613 413 284 326 56 22 chr13 34932278 34932456 -66940713 - MER89-int LTR ERV1 -408 6393 6210 2499 183 40 4 chr13 34932501 34932972 -66940197 + MLT2B3 LTR ERVL 21 508 -46 238 50 50 0 chr13 34932973 34933013 -66940156 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 382 68 99 19 chr13 34933051 34933213 -66939956 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 334 103 17 0 chr13 34933214 34933272 -66939897 + MLT2B3 LTR ERVL 462 520 0 609 183 0 0 chr13 34933769 34933862 -66939307 - AluJb SINE Alu -58 254 162 13343 92 5 2 chr13 34933909 34936584 -66936585 - L1PA7 LINE L1 -1 6153 3463 592 350 29 51 chr13 34936793 34937319 -66935850 - MER89-int LTR ERV1 -3152 3649 3136 25 65 0 0 chr13 34937467 34937513 -66935656 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr13 34937553 34937579 -66935590 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr13 34938738 34938781 -66934388 + AT_rich Low_complexity Low_complexity 1 43 0 238 293 0 0 chr13 34939168 34939226 -66933943 + GA-rich Low_complexity Low_complexity 3 60 0 379 163 25 25 chr13 34940297 34940377 -66932792 - MER90 LTR ERV1 0 614 535 427 186 115 0 chr13 34940594 34940707 -66932462 - L1MD1 LINE L1 -19 6617 6492 1127 167 11 5 chr13 34940709 34940895 -66932274 - AluJb SINE Alu -4 308 122 689 137 18 30 chr13 34940895 34941063 -66932106 + CT-rich Low_complexity Low_complexity 4 169 0 253 132 0 0 chr13 34941081 34941119 -66932050 - FLAM SINE Alu -24 109 72 3872 179 56 20 chr13 34941119 34942165 -66931004 - L1MD1 LINE L1 -135 6501 5409 35102 77 14 7 chr13 34942179 34947161 -66926008 + L1PA5 LINE L1 11 5028 -1118 7237 44 3 0 chr13 34947164 34948054 -66925115 + L1PA5 LINE L1 5254 6146 -8 3620 218 71 83 chr13 34948067 34949883 -66923286 - L1MD1 LINE L1 -1121 5419 3582 889 180 25 0 chr13 34949883 34950044 -66923125 + AluJb SINE Alu 1 165 -147 3620 218 71 83 chr13 34950044 34951237 -66921932 - L1MD1 LINE L1 -2958 3582 2376 266 87 22 0 chr13 34951237 34951283 -66921886 + (TA)n Simple_repeat Simple_repeat 1 47 0 3620 218 71 83 chr13 34951283 34951602 -66921567 - L1MD1 LINE L1 -4164 2376 1990 2032 125 3 3 chr13 34951602 34951936 -66921233 - AluSq SINE Alu 0 313 1 3620 218 71 83 chr13 34951936 34952133 -66921036 - L1MD1 LINE L1 -4550 1990 1792 495 268 122 18 chr13 34954589 34954753 -66918416 - MIR SINE MIR -9 253 73 665 300 33 49 chr13 34954932 34955322 -66917847 + HAL1 LINE L1 501 884 -1623 1700 245 97 9 chr13 34955373 34955780 -66917389 + HAL1 LINE L1 1710 2200 -307 3725 168 23 34 chr13 34955780 34956520 -66916649 + MER44D DNA MER2_type 2 605 0 1700 245 97 9 chr13 34956520 34956782 -66916387 + HAL1 LINE L1 2200 2438 -69 30 27 0 0 chr13 34956826 34956863 -66916306 + AT_rich Low_complexity Low_complexity 1 37 0 417 242 2 7 chr13 34957076 34957213 -66915956 - MLT1L LTR MaLR 0 615 454 1117 156 123 0 chr13 34958934 34959146 -66914023 - LTR64 LTR ERVK -90 468 231 2313 123 0 0 chr13 34959157 34959466 -66913703 - AluSq SINE Alu -4 309 1 2128 127 31 20 chr13 34959466 34959820 -66913349 - THE1B LTR MaLR -6 358 1 1542 127 0 0 chr13 34959820 34960056 -66913113 - LTR64 LTR ERVK -322 236 1 1385 182 92 26 chr13 34960569 34961167 -66912002 - LOR1-int LTR ERV1 -1682 4916 2471 714 192 10 54 chr13 34961245 34961448 -66911721 - LOR1-int LTR ERV1 -2869 3729 3536 3225 162 30 54 chr13 34961532 34962653 -66910516 - LOR1-int LTR ERV1 -4279 2479 1220 4022 152 14 1 chr13 34962662 34963372 -66909797 - L1PB4 LINE L1 -7 6149 5431 625 229 0 0 chr13 34963416 34963547 -66909622 - FLAM_C SINE Alu -6 137 7 2931 180 51 16 chr13 34963551 34964312 -66908857 - L1PB4 LINE L1 -743 5403 4654 3914 152 51 30 chr13 34964315 34965252 -66907917 - LTR57-int LTR ERVL -4073 1270 313 576 301 51 47 chr13 34965519 34965775 -66907394 - LOR1-int LTR ERV1 -6135 623 367 3348 125 60 4 chr13 34966182 34966695 -66906474 - LTR64 LTR ERVK -16 542 1 226 204 0 0 chr13 34966818 34966862 -66906307 - L1ME3A LINE L1 -219 5951 5908 414 321 115 2 chr13 34966930 34967241 -66905928 - L1ME3A LINE L1 -399 5771 5425 436 296 167 14 chr13 34967485 34967701 -66905468 - MIR SINE MIR 0 262 14 489 327 82 44 chr13 34968103 34968531 -66904638 - L1MEd LINE L1 -5353 766 323 943 268 49 70 chr13 34968533 34969083 -66904086 + MLT1G3 LTR MaLR 1 583 -12 763 243 45 28 chr13 34969493 34969740 -66903429 + L2 LINE L2 1822 2072 -1242 423 0 0 0 chr13 34969769 34969816 -66903353 + (TG)n Simple_repeat Simple_repeat 2 48 0 242 309 120 76 chr13 34970281 34970572 -66902597 - L2 LINE L2 0 3272 2969 2965 111 14 5 chr13 34971159 34971583 -66901586 + L1PB1 LINE L1 5723 6150 -1 2375 169 74 89 chr13 34971705 34972233 -66900936 + MLT2B1 LTR ERVL 1 520 0 348 302 47 7 chr13 34972454 34972610 -66900559 + MIR SINE MIR 31 195 -67 1589 181 48 56 chr13 34973913 34974288 -66898881 - MLT1B LTR MaLR -16 374 3 1367 287 29 22 chr13 34974688 34974991 -66898178 + L2 LINE L2 2860 3168 -145 2241 153 16 19 chr13 34974991 34975357 -66897812 - MER47A DNA MER2_type 0 366 2 1367 287 29 22 chr13 34975357 34975503 -66897666 + L2 LINE L2 3168 3312 -1 439 251 36 72 chr13 34976225 34976380 -66896789 + MIR SINE MIR 19 169 -63 496 145 24 0 chr13 34977206 34977289 -66895880 + Charlie1 DNA MER1_type 2661 2745 -16 357 194 15 0 chr13 34977302 34977369 -66895800 + Charlie1 DNA MER1_type 2694 2761 0 365 239 202 0 chr13 34978135 34978244 -66894925 + MIR SINE MIR 47 177 -85 184 400 42 0 chr13 34978417 34978512 -66894657 - L2 LINE L2 -23 3249 3151 1267 141 137 0 chr13 34978571 34978812 -66894357 - L1MC1 LINE L1 0 6333 6060 2285 176 37 60 chr13 34979076 34979588 -66893581 + MLT1D LTR MaLR 6 505 0 483 321 66 10 chr13 34980025 34980221 -66892948 - MIR SINE MIR 0 262 56 290 270 103 32 chr13 34980273 34980399 -66892770 + MIR SINE MIR 20 154 -108 690 332 21 0 chr13 34980414 34980652 -66892517 + MIR SINE MIR 3 245 -17 206 204 0 23 chr13 34982369 34982413 -66890756 - MIR SINE MIR -50 212 170 5700 84 20 8 chr13 34982528 34983267 -66889902 + L1PA11 LINE L1 5420 6167 -7 519 315 62 28 chr13 34983345 34983598 -66889571 - MIR SINE MIR 0 262 3 320 310 49 15 chr13 34983877 34984020 -66889149 + MIR SINE MIR 16 163 -45 294 333 77 39 chr13 34984414 34984621 -66888548 + MIR SINE MIR 42 256 -6 329 383 62 29 chr13 34985636 34986139 -66887030 - L2 LINE L2 -212 3060 2542 5289 199 44 13 chr13 34987527 34988998 -66884171 - L1MD2 LINE L1 0 6359 4848 4315 169 60 40 chr13 34989006 34989045 -66884124 + L1MB3 LINE L1 5173 5210 -973 2223 158 92 5 chr13 34989045 34989437 -66883732 + MSTB LTR MaLR 1 426 0 4315 169 60 40 chr13 34989437 34989980 -66883189 + L1MB3 LINE L1 5210 5781 -402 1791 171 25 109 chr13 34989980 34990412 -66882757 + MSTD LTR MaLR 1 396 0 4315 169 60 40 chr13 34990412 34990822 -66882347 + L1MB3 LINE L1 5781 6181 -2 1772 219 16 14 chr13 34990817 34991246 -66881923 - L1MD2 LINE L1 -1286 4860 4431 * 563 330 11 5 chr13 34992920 34993105 -66880064 - MIR SINE MIR -21 241 56 2141 110 3 0 chr13 34993116 34993407 -66879762 - AluSg SINE Alu -12 298 7 305 255 59 20 chr13 34994822 34994924 -66878245 + L2 LINE L2 3164 3269 -44 307 262 76 131 chr13 34994993 34995230 -66877939 + MIR SINE MIR 8 231 -31 840 284 45 0 chr13 34996145 34996367 -66876802 - MIR SINE MIR 0 262 31 362 308 54 0 chr13 34996984 34997114 -66876055 + L2 LINE L2 3136 3272 0 1506 157 82 37 chr13 34997307 34997601 -66875568 + AluJo SINE Alu 1 307 -5 456 65 16 0 chr13 34997732 34997794 -66875375 + MADE1 DNA Mariner 18 80 0 254 261 33 22 chr13 34998190 34998282 -66874887 - L1MC4 LINE L1 -16 8026 7934 2394 87 3 0 chr13 34998415 34998715 -66874454 - AluSx SINE Alu -11 301 1 353 323 125 22 chr13 34998944 34999176 -66873993 - L1MC/D LINE L1 -2055 5577 5322 1110 193 97 75 chr13 34999193 34999648 -66873521 - L1MC4 LINE L1 -16 8026 7562 621 274 163 16 chr13 34999651 35000226 -66872943 - L1MC/D LINE L1 -660 5330 4674 398 288 12 62 chr13 35000257 35000397 -66872772 - L1ME LINE L1 -519 5643 5498 2718 98 31 17 chr13 35000397 35000756 -66872413 + THE1B LTR MaLR 1 364 0 13022 82 9 1 chr13 35000756 35002323 -66870846 + THE1B-int LTR MaLR 1 1580 0 2571 122 28 17 chr13 35002323 35002683 -66870486 + THE1B LTR MaLR 1 364 0 398 288 12 62 chr13 35002683 35002700 -66870469 - L1ME LINE L1 -661 5501 5492 185 299 138 0 chr13 35002963 35003050 -66870119 + MIR SINE MIR 164 262 0 376 385 115 7 chr13 35003053 35003349 -66869820 + L2 LINE L2 2403 2730 -584 541 264 115 0 chr13 35003569 35003751 -66869418 + MIR SINE MIR 8 210 -52 278 286 66 33 chr13 35003902 35003993 -66869176 + MLT1K LTR MaLR 104 197 -391 1218 249 72 34 chr13 35004400 35004845 -66868324 + MLT1C LTR MaLR 6 467 0 545 258 8 0 chr13 35005075 35005203 -66867966 - MER94 DNA DNA -1 133 5 2509 124 113 10 chr13 35005270 35005658 -66867511 - MSTA LTR MaLR 0 428 1 679 228 84 18 chr13 35006145 35006312 -66866857 + MER5B DNA MER1_type 1 178 0 2548 103 48 50 chr13 35006414 35006813 -66866356 + MER48 LTR ERV1 1 398 0 350 314 176 41 chr13 35007902 35008220 -66864949 + L2 LINE L2 2904 3264 -8 246 296 0 28 chr13 35008398 35008469 -66864700 - MIR3 SINE MIR -125 83 15 501 303 68 0 chr13 35008958 35009120 -66864049 - MIR SINE MIR -21 241 69 433 304 144 29 chr13 35009184 35009427 -66863742 + L1MC/D LINE L1 5536 5806 -2002 335 307 11 0 chr13 35009752 35009840 -66863329 - LTR67 LTR ERVL -377 180 92 4965 216 39 79 chr13 35010169 35010536 -66862633 - L1MC/D LINE L1 -1746 4224 3844 697 101 0 0 chr13 35010536 35010625 -66862544 + 5S rRNA rRNA 1 89 -32 4965 216 39 79 chr13 35010625 35011876 -66861293 - L1MC/D LINE L1 -2126 3844 2587 3389 252 76 41 chr13 35011865 35012349 -66860820 - L1M1 LINE L1 -3627 2343 1877 * 4870 82 8 2 chr13 35012349 35012945 -66860224 - MER4A LTR ERV1 0 600 1 3389 252 76 41 chr13 35012945 35013227 -66859942 - L1M1 LINE L1 -4093 1877 1606 2820 138 7 9 chr13 35013227 35013662 -66859507 - MER57B LTR ERV1 0 434 1 3389 252 76 41 chr13 35013662 35014331 -66858838 - L1M1 LINE L1 -4364 1606 845 180 0 0 0 chr13 35014331 35014351 -66858818 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3389 252 76 41 chr13 35014351 35014829 -66858340 - L1M1 LINE L1 -5125 845 385 571 288 77 55 chr13 35015074 35015400 -66857769 - L1M1 LINE L1 -5558 333 1 2324 175 89 69 chr13 35016123 35016631 -66856538 + MLT2B1 LTR ERVL 3 520 0 459 0 0 0 chr13 35018219 35018270 -66854899 + (TG)n Simple_repeat Simple_repeat 2 52 0 266 279 15 0 chr13 35018270 35018338 -66854831 + L2 LINE L2 3193 3261 -11 250 229 186 42 chr13 35018513 35018631 -66854538 + MIR SINE MIR 120 254 -8 202 276 86 95 chr13 35018884 35018989 -66854180 + L2 LINE L2 3169 3272 0 329 285 65 83 chr13 35019095 35019427 -66853742 + L2 LINE L2 2716 3063 -209 800 265 78 37 chr13 35019427 35019667 -66853502 - L2 LINE L2 0 3313 3055 1393 263 87 11 chr13 35019667 35020047 -66853122 - MLT1I LTR MaLR 0 409 1 800 265 78 37 chr13 35020047 35020127 -66853042 - L2 LINE L2 -258 3055 2980 1481 232 44 25 chr13 35020131 35020605 -66852564 + L2 LINE L2 2413 2895 -419 263 325 39 13 chr13 35020614 35020691 -66852478 - L2 LINE L2 -1 3312 3234 303 93 0 0 chr13 35020847 35020890 -66852279 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr13 35020889 35020909 -66852260 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 * 258 32 0 0 chr13 35022138 35022169 -66851000 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 208 303 148 21 chr13 35023165 35023307 -66849862 + MIR SINE MIR 47 206 -56 511 304 51 33 chr13 35023648 35023862 -66849307 - LTR67 LTR ERVL -3 554 337 23 0 0 0 chr13 35024144 35024167 -66849002 + AT_rich Low_complexity Low_complexity 1 23 0 4789 154 11 62 chr13 35024190 35025174 -66847995 - L1MA7 LINE L1 -4 6287 5354 1665 309 68 22 chr13 35025399 35026169 -66847000 - ERVL LTR ERVL -501 5263 4459 5731 215 49 33 chr13 35026219 35027634 -66845535 - L1PBa LINE L1 -3916 2947 2390 1812 146 71 0 chr13 35027634 35027901 -66845268 + AluSx SINE Alu 13 298 -14 5731 215 49 33 chr13 35027901 35029950 -66843219 - L1PBa LINE L1 -4473 2390 376 269 255 49 49 chr13 35029950 35030052 -66843117 - ERVL LTR ERVL -1583 4181 4080 287 238 95 12 chr13 35030098 35030182 -66842987 - ERVL LTR ERVL -2346 3418 3328 1158 318 75 28 chr13 35030332 35031007 -66842162 - ERVL LTR ERVL -1912 3084 2413 2355 139 24 9 chr13 35031031 35031370 -66841799 + MER2 DNA MER2_type 1 344 0 742 200 74 7 chr13 35031422 35031588 -66841581 + MLT1B LTR MaLR 1 176 -198 450 0 0 0 chr13 35031588 35031638 -66841531 + (TC)n Simple_repeat Simple_repeat 1 50 0 742 200 74 7 chr13 35031638 35031649 -66841520 + MLT1B LTR MaLR 176 185 -189 343 336 0 0 chr13 35032142 35032261 -66840908 - ERVL LTR ERVL -5134 630 512 206 188 16 31 chr13 35032291 35032355 -66840814 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 393 213 0 0 chr13 35032475 35032550 -66840619 - LTR67 LTR ERVL -2 555 481 1012 59 0 0 chr13 35032562 35032681 -66840488 + AluY SINE Alu 1 119 -192 865 260 100 82 chr13 35032694 35033183 -66839986 - LTR67 LTR ERVL -58 499 2 2408 35 6 35 chr13 35033233 35033546 -66839623 + AluY SINE Alu 1 304 -7 205 190 52 35 chr13 35033714 35033772 -66839397 + MER91 DNA MER1_type 1 59 -81 203 366 9 9 chr13 35033799 35033911 -66839258 + MIR SINE MIR 12 123 -139 1084 223 48 0 chr13 35034084 35034290 -66838879 + MER20 DNA MER1_type 4 219 0 1047 208 14 27 chr13 35034569 35034790 -66838379 + MER20 DNA MER1_type 1 218 -1 193 230 81 68 chr13 35035224 35035298 -66837871 - L2 LINE L2 -10 3262 3188 1160 161 12 33 chr13 35035590 35035620 -66837549 - MSTB LTR MaLR -1 425 396 1435 150 26 9 chr13 35035620 35035846 -66837323 + MER30 DNA MER1_type 1 230 0 1160 161 12 33 chr13 35035846 35036148 -66837021 - MSTB LTR MaLR -30 396 1 223 172 52 35 chr13 35036345 35036403 -66836766 + MER91 DNA MER1_type 1 59 -81 392 324 7 7 chr13 35036430 35036566 -66836603 + MIR SINE MIR 12 147 -115 394 274 119 32 chr13 35038186 35038431 -66834738 + MIR SINE MIR 1 262 0 2069 110 4 7 chr13 35038441 35038749 -66834420 - AluSx SINE Alu 0 310 4 1392 132 19 0 chr13 35038750 35038955 -66834214 + Tigger1 DNA MER2_type 364 572 -1846 721 203 0 0 chr13 35038955 35039073 -66834096 - FLAM_C SINE Alu -15 118 1 651 313 110 26 chr13 35039156 35039466 -66833703 - L2 LINE L2 0 3272 2937 2283 118 0 0 chr13 35039734 35040040 -66833129 + AluSx SINE Alu 1 306 -6 618 247 96 60 chr13 35040566 35040817 -66832352 - MIR SINE MIR -1 261 2 324 298 85 0 chr13 35040909 35041050 -66832119 + L1ME LINE L1 5672 5824 -297 1254 296 69 21 chr13 35041055 35041521 -66831648 + HAL1 LINE L1 1 488 -2019 1982 268 137 0 chr13 35041575 35042231 -66830938 + L2 LINE L2 1956 2701 -613 509 292 120 0 chr13 35042226 35042435 -66830734 + L2 LINE L2 2837 3070 -243 * 1895 129 37 0 chr13 35042443 35042741 -66830428 - AluSq SINE Alu 0 308 1 257 280 0 0 chr13 35042816 35042866 -66830303 + MIR SINE MIR 204 253 -9 441 287 32 6 chr13 35042937 35043094 -66830075 + HAL1 LINE L1 605 765 -1742 507 184 11 0 chr13 35043110 35043197 -66829972 + MER81 DNA DNA 26 113 -1 3369 255 164 33 chr13 35043198 35044730 -66828439 + HAL1 LINE L1 761 2494 -13 2732 26 0 6 chr13 35044730 35045058 -66828111 - AluYa5 SINE Alu 0 326 1 484 236 179 61 chr13 35045075 35045174 -66827995 - L1ME3A LINE L1 -5 6165 6079 2196 122 0 0 chr13 35045174 35045468 -66827701 - AluSx SINE Alu -18 294 1 484 236 179 61 chr13 35045468 35045597 -66827572 - L1ME3A LINE L1 -91 6079 5910 205 222 25 12 chr13 35045601 35045668 -66827501 + (TAA)n Simple_repeat Simple_repeat 2 72 -11 361 121 60 96 chr13 35045668 35045751 -66827418 - MADE1 DNA Mariner 0 80 1 205 222 25 12 chr13 35045751 35045764 -66827405 + (TAA)n Simple_repeat Simple_repeat 72 83 0 501 262 87 4 chr13 35045777 35045968 -66827201 - L1ME3A LINE L1 -272 5898 5727 530 323 113 50 chr13 35046104 35046503 -66826666 - L2 LINE L2 0 3272 2849 255 296 68 0 chr13 35046560 35046648 -66826521 - L2 LINE L2 -1407 1907 1814 270 0 0 0 chr13 35047049 35047079 -66826090 + (CA)n Simple_repeat Simple_repeat 2 31 0 30 0 0 0 chr13 35047963 35047993 -66825176 + AT_rich Low_complexity Low_complexity 1 30 0 191 308 158 17 chr13 35048114 35048234 -66824935 - L2 LINE L2 -2 3311 3175 236 30 30 0 chr13 35048962 35048995 -66824174 + (TC)n Simple_repeat Simple_repeat 2 35 0 239 343 41 68 chr13 35049332 35049478 -66823691 - L2 LINE L2 -5 3267 3126 456 220 5 151 chr13 35049892 35050110 -66823059 + L2 LINE L2 3095 3280 -33 237 132 0 0 chr13 35050125 35050163 -66823006 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 370 294 73 45 chr13 35051216 35051393 -66821776 + MIR SINE MIR 25 206 -56 342 302 9 17 chr13 35051682 35051798 -66821371 - L2 LINE L2 -2 3270 3156 989 275 69 125 chr13 35052040 35052665 -66820504 + L2 LINE L2 1755 2319 -995 1817 156 9 41 chr13 35052665 35052985 -66820184 - AluJb SINE Alu -2 310 1 989 275 69 125 chr13 35052985 35053233 -66819936 + L2 LINE L2 2319 2579 -735 811 244 79 125 chr13 35053208 35053546 -66819623 + L2 LINE L2 2816 3123 -190 * 2261 97 3 0 chr13 35053546 35053834 -66819335 + AluSx SINE Alu 1 289 -23 811 244 79 125 chr13 35053834 35054016 -66819153 + L2 LINE L2 3123 3312 -1 439 296 26 7 chr13 35054537 35054689 -66818480 - MER117 DNA MER1_type -42 155 1 381 241 175 0 chr13 35055062 35055199 -66817970 + MIR SINE MIR 92 252 -10 194 383 33 17 chr13 35056658 35056778 -66816391 - L3b LINE CR1 -121 1462 1341 1602 196 11 48 chr13 35056967 35057324 -66815845 - L1MD3 LINE L1 -296 7699 7356 2130 171 11 14 chr13 35057466 35057829 -66815340 - MLT1A1 LTR MaLR 0 365 4 33 0 0 0 chr13 35057850 35057883 -66815286 + AT_rich Low_complexity Low_complexity 1 33 0 6639 121 27 1 chr13 35057910 35059015 -66814154 - L1MA4 LINE L1 -7 6293 5157 227 254 0 70 chr13 35059480 35059551 -66813618 + L3 LINE CR1 1508 1573 -4 2218 99 30 0 chr13 35059662 35060039 -66813130 + AluSx SINE Alu 1 386 0 905 216 0 82 chr13 35060116 35060348 -66812821 - MER58C DNA MER1_type -1 214 2 359 253 101 0 chr13 35060352 35060451 -66812718 - MER103 DNA DNA -57 109 1 660 292 65 75 chr13 35060597 35061428 -66811741 + L1ME3 LINE L1 5039 5873 -248 1974 144 7 0 chr13 35061428 35061733 -66811436 + AluSp SINE Alu 1 307 -6 660 292 65 75 chr13 35061733 35061825 -66811344 + L1ME3 LINE L1 5873 5964 -157 951 108 0 0 chr13 35061872 35061992 -66811177 - AluSq/x SINE Alu -193 120 1 306 263 90 32 chr13 35064273 35064429 -66808740 - LTR67 LTR ERVL -36 521 357 551 294 181 31 chr13 35066201 35066616 -66806553 - L2 LINE L2 0 3313 2837 301 269 48 54 chr13 35067169 35067336 -66805833 - L2 LINE L2 -560 2754 2589 1843 154 34 3 chr13 35067804 35068097 -66805072 + AluJb SINE Alu 1 302 -10 212 29 0 59 chr13 35068158 35068192 -66804977 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 760 177 26 0 chr13 35068203 35068316 -66804853 - FLAM_C SINE Alu -26 117 2 2132 114 7 3 chr13 35069059 35069349 -66803820 - AluSc SINE Alu -18 291 1 301 284 92 9 chr13 35069736 35069845 -66803324 + MER57A LTR ERV1 1 118 -316 1071 220 103 28 chr13 35070138 35070447 -66802722 + MER57A LTR ERV1 99 403 0 22 35 0 0 chr13 35070472 35070501 -66802668 + AT_rich Low_complexity Low_complexity 1 29 0 591 340 98 18 chr13 35070551 35070951 -66802218 + L3 LINE CR1 678 1109 -468 2224 145 132 8 chr13 35070965 35071345 -66801824 - MSTA LTR MaLR -1 427 1 9254 144 41 42 chr13 35071345 35072924 -66800245 - MSTA-int LTR MaLR 0 1580 3 2027 143 137 8 chr13 35072929 35073301 -66799868 - MSTA LTR MaLR -3 425 6 485 284 72 49 chr13 35073303 35073692 -66799477 - MLT1J LTR MaLR -4 461 106 318 282 212 46 chr13 35073891 35074150 -66799019 + L3 LINE CR1 1276 1577 0 302 289 151 19 chr13 35074221 35074380 -66798789 - MIR SINE MIR -77 185 6 261 327 87 7 chr13 35075507 35075657 -66797512 + MIR3 SINE MIR 30 191 -17 274 180 155 0 chr13 35075726 35075802 -66797367 - MIR SINE MIR -62 146 82 445 261 125 17 chr13 35075837 35076013 -66797156 - HAL1 LINE L1 0 2507 2313 825 193 71 21 chr13 35076029 35076267 -66796902 - HAL1 LINE L1 -279 2228 1979 15751 121 27 21 chr13 35076313 35076681 -66796488 + Tigger1 DNA MER2_type 14 378 -2040 2168 116 0 13 chr13 35076681 35076984 -66796185 - AluSx SINE Alu -10 302 4 15751 121 27 21 chr13 35076984 35078446 -66794723 + Tigger1 DNA MER2_type 378 1865 -553 2327 92 13 0 chr13 35078446 35078749 -66794420 + AluY SINE Alu 2 308 -3 15751 121 27 21 chr13 35078749 35079307 -66793862 + Tigger1 DNA MER2_type 1865 2418 0 1710 259 18 11 chr13 35079307 35079751 -66793418 - HAL1 LINE L1 -555 1952 1506 2825 243 54 41 chr13 35080634 35081094 -66792075 - L1ME3A LINE L1 -270 5900 5448 1922 113 53 25 chr13 35081094 35081242 -66791927 - AluSc SINE Alu -18 291 149 2241 98 40 0 chr13 35081242 35081538 -66791631 - AluSq SINE Alu -5 308 1 1922 113 53 25 chr13 35081538 35081672 -66791497 - AluSc SINE Alu -160 149 1 2825 243 54 41 chr13 35081672 35081992 -66791177 - L1ME3A LINE L1 -722 5448 5134 2062 134 0 7 chr13 35081992 35082298 -66790871 - AluSq SINE Alu -8 305 2 2825 243 54 41 chr13 35082298 35083170 -66789999 - L1ME3A LINE L1 -1036 5134 3653 597 267 112 14 chr13 35083971 35084198 -66788971 - MIR SINE MIR -12 250 5 323 291 80 7 chr13 35084642 35084793 -66788376 + MER103 DNA DNA 4 165 -1 448 319 44 6 chr13 35084928 35085110 -66788059 + L3 LINE CR1 1388 1576 -1 3591 198 48 42 chr13 35085177 35085954 -66787215 + MER21B LTR ERV1 12 792 -71 700 252 156 66 chr13 35086040 35086509 -66786660 - MLT1J LTR MaLR 0 511 1 407 277 60 42 chr13 35087392 35087558 -66785611 + MER5B DNA MER1_type 7 175 -3 390 338 111 8 chr13 35088083 35088317 -66784852 - L3b LINE CR1 -197 1386 1129 427 313 34 56 chr13 35088502 35088681 -66784488 + MIR3 SINE MIR 19 193 -15 644 276 56 28 chr13 35090254 35090468 -66782701 + MIR SINE MIR 17 236 -26 24 0 0 0 chr13 35091801 35091825 -66781344 + AT_rich Low_complexity Low_complexity 1 24 0 492 206 95 123 chr13 35092203 35092446 -66780723 - MER112 DNA MER1_type 0 260 25 2102 123 76 25 chr13 35092516 35092873 -66780296 + THE1C LTR MaLR 1 375 0 345 114 0 0 chr13 35093003 35093058 -66780111 - MLT2D LTR ERVL -2 462 415 229 65 0 0 chr13 35093067 35093113 -66780056 - LTR66 LTR ERVL -171 439 394 294 143 0 0 chr13 35093113 35093162 -66780007 + (CA)n Simple_repeat Simple_repeat 2 50 0 341 87 0 0 chr13 35093243 35093289 -66779880 + MLT2C2 LTR ERVL 417 462 -2 1003 173 115 21 chr13 35093361 35093604 -66779565 - MLT2D LTR ERVL -46 368 103 539 140 65 9 chr13 35093696 35093803 -66779366 - MLT2B1 LTR ERVL -407 113 1 507 264 61 7 chr13 35093906 35094054 -66779115 - MER63A DNA MER1_type 0 210 55 1051 47 0 16 chr13 35094235 35094364 -66778805 - L1PB3 LINE L1 0 6154 6028 2338 112 0 0 chr13 35094544 35094848 -66778321 + AluSx SINE Alu 1 304 -8 621 227 95 103 chr13 35094852 35095178 -66777991 + L1MC5 LINE L1 7390 7712 -249 2680 121 54 5 chr13 35095178 35095584 -66777585 + MSTA LTR MaLR 3 428 0 621 227 95 103 chr13 35095584 35095803 -66777366 + L1MC5 LINE L1 7712 7931 -30 1994 116 22 0 chr13 35096255 35096558 -66776611 + AluSq SINE Alu 1 309 0 5291 117 30 4 chr13 35096615 35097374 -66775795 + MER4E LTR ERV1 1 779 0 264 328 15 22 chr13 35097518 35097652 -66775517 - MIR3 SINE MIR -9 199 67 391 236 77 93 chr13 35097969 35098103 -66775066 - MIR SINE MIR 0 262 130 2402 88 3 0 chr13 35098103 35098409 -66774760 + AluSp SINE Alu 1 307 -6 391 236 77 93 chr13 35098409 35098456 -66774713 - MIR SINE MIR -132 130 84 386 289 95 74 chr13 35098508 35098698 -66774471 + MER91A DNA MER1_type 1 194 -2 292 267 193 11 chr13 35098869 35099045 -66774124 + L1MB7 LINE L1 5975 6182 -2 4815 191 42 24 chr13 35099182 35100195 -66772974 + MER45B DNA AcHobo 8 1039 -1 2090 97 3 79 chr13 35100212 35100542 -66772627 + AluSx SINE Alu 1 305 -7 310 265 88 10 chr13 35100561 35100663 -66772506 - MIR SINE MIR -82 126 17 2212 123 10 0 chr13 35100729 35101031 -66772138 + AluSx SINE Alu 1 305 -7 622 240 125 10 chr13 35101842 35102034 -66771135 - MIR SINE MIR 0 262 49 204 264 97 69 chr13 35102192 35102264 -66770905 - MER91A DNA MER1_type 0 196 123 2005 108 0 30 chr13 35102489 35102786 -66770383 + AluSg SINE Alu 1 288 -22 306 73 0 0 chr13 35102786 35102827 -66770342 + (TA)n Simple_repeat Simple_repeat 1 41 0 1996 135 0 3 chr13 35102844 35103132 -66770037 + AluSg SINE Alu 1 287 -23 26 0 0 0 chr13 35103132 35103158 -66770011 + AT_rich Low_complexity Low_complexity 1 26 0 259 130 0 0 chr13 35103162 35103208 -66769961 - LTR66 LTR ERVL -171 439 394 21 0 0 0 chr13 35104687 35104708 -66768461 + AT_rich Low_complexity Low_complexity 1 21 0 421 258 110 31 chr13 35105414 35105577 -66767592 - MIR SINE MIR -6 256 81 684 226 64 10 chr13 35105710 35105914 -66767255 + MER20B DNA MER1_type 569 783 0 1843 118 135 32 chr13 35107633 35107973 -66765196 - THE1C LTR MaLR 0 375 1 23 78 0 0 chr13 35108593 35108644 -66764525 + AT_rich Low_complexity Low_complexity 1 51 0 258 32 0 0 chr13 35108645 35108657 -66764512 + (TG)n Simple_repeat Simple_repeat 1 43 0 258 32 0 0 chr13 35108657 35108688 -66764481 + (TG)n Simple_repeat Simple_repeat 2 32 0 258 286 143 31 chr13 35108982 35109080 -66764089 - L2 LINE L2 -50 3222 3114 214 200 0 0 chr13 35109658 35109698 -66763471 + (TAA)n Simple_repeat Simple_repeat 2 41 0 3873 243 121 35 chr13 35110191 35111623 -66761546 - L2 LINE L2 -184 3129 1558 180 0 0 0 chr13 35111646 35111666 -66761503 + (A)n Simple_repeat Simple_repeat 1 20 0 190 244 24 0 chr13 35111673 35111714 -66761455 - L2 LINE L2 -1764 1550 1509 1803 182 54 6 chr13 35111790 35112125 -66761044 + MLT1A1 LTR MaLR 15 365 0 183 100 0 0 chr13 35112308 35112338 -66760831 + (T)n Simple_repeat Simple_repeat 1 30 0 374 109 0 18 chr13 35112355 35112410 -66760759 - LTR7 LTR ERV1 -8 442 389 873 115 92 14 chr13 35112580 35112738 -66760431 - LTR7 LTR ERV1 -232 218 1 2863 95 16 29 chr13 35112738 35113189 -66759980 - HERVH LTR ERV1 0 7713 7269 * 16332 168 62 46 chr13 35113171 35116957 -66756212 - HERVH LTR ERV1 -2693 5020 1172 1911 157 67 66 chr13 35116944 35117672 -66755497 - HERVH LTR ERV1 -6668 1045 1 * 1424 183 116 74 chr13 35117672 35118104 -66755065 - LTR7 LTR ERV1 0 450 1 209 145 29 29 chr13 35118578 35118647 -66754522 + GA-rich Low_complexity Low_complexity 2 70 0 262 341 30 0 chr13 35118838 35118973 -66754196 + L2 LINE L2 2247 2385 -929 835 203 88 30 chr13 35120387 35120642 -66752527 + L1ME1 LINE L1 5915 6182 -2 196 176 0 0 chr13 35120680 35120714 -66752455 + L2 LINE L2 3230 3263 -9 187 263 100 12 chr13 35122264 35122344 -66750825 - MIR SINE MIR 0 262 176 1736 186 0 3 chr13 35122707 35122992 -66750177 + AluJo SINE Alu 1 284 -28 2147 117 3 3 chr13 35122995 35123293 -66749876 - AluSg SINE Alu -12 298 1 25 65 0 0 chr13 35123295 35123341 -66749828 + AT_rich Low_complexity Low_complexity 1 46 0 806 268 106 11 chr13 35123422 35123799 -66749370 - L1ME4a LINE L1 -2 6119 5707 252 250 0 0 chr13 35123803 35123859 -66749310 - L1ME4a LINE L1 -452 5669 5614 2397 94 0 0 chr13 35123875 35124182 -66748987 + AluSx SINE Alu 1 307 -5 2362 89 0 13 chr13 35124207 35124340 -66748829 + AluSg SINE Alu 1 134 -176 2473 64 3 6 chr13 35124340 35124652 -66748517 + AluY SINE Alu 1 311 0 2362 89 0 13 chr13 35124652 35124821 -66748348 + AluSg SINE Alu 134 299 -11 246 128 0 0 chr13 35124994 35125033 -66748136 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 235 299 92 40 chr13 35125808 35125982 -66747187 - MIR SINE MIR -46 216 34 3228 94 16 16 chr13 35125989 35126423 -66746746 + MER57B LTR ERV1 1 434 0 624 276 15 67 chr13 35126770 35127038 -66746131 + MIR SINE MIR 1 254 -8 189 132 0 0 chr13 35127039 35127077 -66746092 + (ATG)n Simple_repeat Simple_repeat 2 39 0 719 235 125 14 chr13 35127573 35127808 -66745361 + MIR SINE MIR 2 261 -1 544 240 114 7 chr13 35128508 35128661 -66744508 + MER69 DNA AcHobo 1 2524 -2 280 207 108 54 chr13 35128696 35128807 -66744362 - MER117 DNA MER1_type -79 118 2 1401 206 74 50 chr13 35128923 35129340 -66743829 + MER31B LTR ERV1 1 427 -39 2354 138 33 33 chr13 35129486 35129849 -66743320 + THE1B LTR MaLR 2 364 0 2046 125 4 0 chr13 35130344 35130623 -66742546 + AluSq SINE Alu 1 280 -33 369 0 0 0 chr13 35130623 35130664 -66742505 + (CA)n Simple_repeat Simple_repeat 1 41 0 551 281 34 0 chr13 35131418 35131564 -66741605 + MLT1J1 LTR MaLR 191 341 -105 232 130 0 43 chr13 35132094 35132140 -66741029 - L2 LINE L2 -5 3308 3265 1172 282 68 18 chr13 35132429 35132809 -66740360 - MER115 DNA AcHobo 0 693 295 324 304 20 0 chr13 35132918 35133020 -66740149 - MER115 DNA AcHobo -589 104 1 330 258 60 26 chr13 35133062 35133130 -66740039 - MER103 DNA DNA -10 156 92 1790 193 73 28 chr13 35133130 35133488 -66739681 - MLT1A2 LTR MaLR 0 374 1 330 258 60 26 chr13 35133488 35133570 -66739599 - MER103 DNA DNA -74 92 1 24 32 0 0 chr13 35134840 35134871 -66738298 + AT_rich Low_complexity Low_complexity 1 31 0 805 144 133 16 chr13 35135502 35135775 -66737394 + MLT1E1 LTR MaLR 1 353 -301 367 274 11 21 chr13 35137262 35137357 -66735812 + L2 LINE L2 3149 3242 -30 320 297 79 39 chr13 35137533 35137664 -66735505 - MIR SINE MIR -63 145 30 287 359 114 15 chr13 35138798 35138870 -66734299 + MIR SINE MIR 2 65 -197 2342 112 0 3 chr13 35138870 35139183 -66733986 - AluSx SINE Alu 0 312 1 287 359 114 15 chr13 35139183 35139241 -66733928 + MIR SINE MIR 65 145 -117 2201 222 38 23 chr13 35139390 35139918 -66733251 - MLT1F LTR MaLR -6 536 1 483 285 85 18 chr13 35139920 35140085 -66733084 + MIR SINE MIR 87 262 0 718 310 56 40 chr13 35140592 35140915 -66732254 - L2 LINE L2 -1 3312 2985 1371 193 0 12 chr13 35141476 35141735 -66731434 + AluJb SINE Alu 40 295 -17 455 262 8 33 chr13 35141745 35141867 -66731302 - MIR3 SINE MIR -21 187 69 376 336 8 8 chr13 35142033 35142161 -66731008 - L2 LINE L2 -973 2341 2214 451 236 66 38 chr13 35142162 35142308 -66730861 - MIR SINE MIR -58 150 20 351 0 0 0 chr13 35143153 35143192 -66729977 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 1910 132 22 0 chr13 35143192 35143464 -66729705 - AluSg SINE Alu -32 278 1 281 270 114 93 chr13 35143507 35143874 -66729295 + L2 LINE L2 1967 2341 -973 260 318 184 20 chr13 35144349 35144669 -66728500 + L2 LINE L2 2473 2739 -533 1458 196 43 4 chr13 35144669 35144945 -66728224 - AluJo SINE Alu -21 291 5 260 318 184 20 chr13 35144945 35145102 -66728067 + L2 LINE L2 2739 3055 -217 1987 167 23 3 chr13 35145185 35145532 -66727637 - MER47A DNA MER2_type -12 354 1 319 307 21 107 chr13 35145562 35145702 -66727467 + L2 LINE L2 3133 3260 -12 250 314 116 8 chr13 35146425 35146543 -66726626 + MIR SINE MIR 23 151 -65 720 265 115 99 chr13 35147035 35147711 -66725458 + HAL1 LINE L1 1117 1803 -704 1256 281 51 8 chr13 35148007 35148398 -66724771 - LTR16A1 LTR ERVL 0 457 50 407 263 11 56 chr13 35148731 35148910 -66724259 + HAL1b LINE L1 746 916 -432 566 289 30 42 chr13 35149028 35149291 -66723878 + HAL1 LINE L1 2246 2505 -2 186 262 90 57 chr13 35149293 35149415 -66723754 + MIR SINE MIR 137 262 0 267 338 50 88 chr13 35149887 35150047 -66723122 + L2 LINE L2 3109 3262 -10 393 102 0 0 chr13 35150047 35150106 -66723063 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 306 231 33 33 chr13 35150315 35150406 -66722763 + MIR SINE MIR 22 112 -150 265 275 150 25 chr13 35150492 35150612 -66722557 + MIR SINE MIR 128 262 0 211 320 200 0 chr13 35150648 35150748 -66722421 - L2 LINE L2 -21 3251 3132 294 313 95 0 chr13 35153382 35153488 -66719681 + MIR SINE MIR 34 148 -66 864 193 47 6 chr13 35154276 35154447 -66718722 - MER5B DNA MER1_type 0 178 1 21 36 0 0 chr13 35154949 35154977 -66718192 + AT_rich Low_complexity Low_complexity 1 28 0 386 300 255 8 chr13 35155773 35156040 -66717129 + L2 LINE L2 2940 3272 0 220 299 11 11 chr13 35156104 35156191 -66716978 + A-rich Low_complexity Low_complexity 4 90 0 207 0 0 0 chr13 35156980 35157003 -66716166 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr13 35157138 35157161 -66716008 + AT_rich Low_complexity Low_complexity 1 23 0 888 252 64 33 chr13 35157231 35157560 -66715609 + MLT1J1 LTR MaLR 86 424 -22 300 216 11 45 chr13 35157737 35157825 -66715344 - L1ME4a LINE L1 -226 5895 5811 197 306 0 48 chr13 35157923 35157985 -66715184 + MER5A DNA MER1_type 1 59 -130 331 278 148 0 chr13 35158241 35158403 -66714766 - MLT1J LTR MaLR -317 194 9 228 292 225 0 chr13 35158475 35158595 -66714574 + MIR SINE MIR 54 200 -62 990 229 52 4 chr13 35158731 35158962 -66714207 + MIR SINE MIR 15 256 -6 3269 221 84 13 chr13 35159957 35160816 -66712353 - L1MC4a LINE L1 -1 7807 6888 2274 97 7 3 chr13 35161995 35162294 -66710875 - AluSx SINE Alu -12 300 1 262 261 22 33 chr13 35162892 35162984 -66710185 + L1MDa LINE L1 5 95 -6445 283 250 0 0 chr13 35163267 35163335 -66709834 - MIR SINE MIR 0 262 195 725 232 0 0 chr13 35163352 35163477 -66709692 + FLAM_A SINE Alu 1 125 -8 2527 68 0 0 chr13 35163482 35163777 -66709392 + AluSg SINE Alu 1 295 -15 1065 241 14 0 chr13 35163817 35164037 -66709132 - MER58A DNA MER1_type 0 224 2 447 256 157 0 chr13 35164042 35164163 -66709006 - MIR SINE MIR -121 141 2 2688 167 59 2 chr13 35164304 35164782 -66708387 - MLT1D LTR MaLR 0 505 1 722 309 132 9 chr13 35165146 35165473 -66707696 - LTR16B LTR ERVL -3 461 95 1083 244 141 42 chr13 35166939 35167393 -66705776 - LTR33A LTR ERVL 0 523 25 2745 176 84 2 chr13 35167451 35167927 -66705242 + MLT2B2 LTR ERVL 1 515 0 1704 173 11 14 chr13 35168128 35168417 -66704752 - AluJo SINE Alu -24 288 6 26 0 0 0 chr13 35168688 35168714 -66704455 + AT_rich Low_complexity Low_complexity 1 26 0 532 125 0 0 chr13 35169627 35169707 -66703462 - MADE1 DNA Mariner 0 80 1 324 280 54 0 chr13 35169803 35169896 -66703273 - MIR SINE MIR -129 133 36 341 316 38 30 chr13 35170404 35170537 -66702632 + MER91A DNA MER1_type 40 173 -23 24 0 0 0 chr13 35170732 35170756 -66702413 + AT_rich Low_complexity Low_complexity 1 24 0 183 345 0 0 chr13 35171041 35171096 -66702073 - L2 LINE L2 -17 3255 3201 2350 67 10 13 chr13 35171186 35171486 -66701683 - AluY SINE Alu -12 299 1 1452 249 267 21 chr13 35172265 35173403 -66699766 - L2 LINE L2 -159 3154 1527 322 281 91 6 chr13 35173478 35173643 -66699526 - L1ME LINE L1 -684 5480 5296 1957 172 51 109 chr13 35173975 35174563 -66698606 + MLT2B3 LTR ERVL 1 554 0 562 275 95 5 chr13 35174596 35174818 -66698351 + L1MEc LINE L1 1579 1820 -4576 2393 62 13 0 chr13 35174980 35175284 -66697885 - AluY SINE Alu -3 308 1 496 215 79 34 chr13 35175374 35175551 -66697618 - LTR16B LTR ERVL -2 462 278 320 320 39 56 chr13 35175567 35175801 -66697368 - L2 LINE L2 -340 2974 2745 196 287 172 0 chr13 35175821 35175908 -66697261 - L2 LINE L2 -3 3269 3168 641 175 83 0 chr13 35176081 35176201 -66696968 + MER96 DNA MER1_type? 1 130 -45 1582 199 22 0 chr13 35176225 35176501 -66696668 - AluJb SINE Alu -30 282 1 3439 163 43 8 chr13 35176523 35176965 -66696204 - L1MB7 LINE L1 -3 6159 5649 583 74 0 12 chr13 35176965 35177046 -66696123 + MADE1 DNA Mariner 1 80 0 3439 163 43 8 chr13 35177046 35177327 -66695842 - L1MB7 LINE L1 -513 5649 5379 2227 221 132 34 chr13 35178853 35179560 -66693609 + LTR50 LTR ERVL 19 794 -1 6298 155 16 5 chr13 35179906 35181973 -66691196 - L1PB1 LINE L1 -1 6150 4063 495 349 66 31 chr13 35182057 35182315 -66690854 + ERVL LTR ERVL 352 618 -5146 351 352 13 44 chr13 35182437 35182660 -66690509 + ERVL LTR ERVL 775 988 -4776 2238 123 0 0 chr13 35182660 35182960 -66690209 - AluJb SINE Alu -10 302 3 351 352 13 44 chr13 35182960 35183034 -66690135 + ERVL LTR ERVL 988 1063 -4701 921 300 14 18 chr13 35183054 35183334 -66689835 + ERVL LTR ERVL 2921 3199 -2565 264 291 12 0 chr13 35183358 35183444 -66689725 + L1M4 LINE L1 3681 3767 -2379 374 252 56 9 chr13 35183460 35183567 -66689602 + L2 LINE L2 3196 3307 -6 343 233 31 83 chr13 35183570 35183763 -66689406 + L1M4 LINE L1 3791 3973 -2173 386 243 107 23 chr13 35183769 35183946 -66689223 + L1M4 LINE L1 4362 4553 -1593 189 0 0 0 chr13 35183946 35183967 -66689202 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 448 214 207 21 chr13 35184377 35184522 -66688647 - MIR SINE MIR 0 262 91 30 27 0 0 chr13 35184536 35184573 -66688596 + AT_rich Low_complexity Low_complexity 1 37 0 1300 264 48 50 chr13 35184607 35185070 -66688099 - MLT1C LTR MaLR 0 467 6 244 259 25 37 chr13 35185074 35185155 -66688014 - MIR SINE MIR -180 82 3 206 163 0 23 chr13 35185683 35185726 -66687443 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1725 173 7 20 chr13 35186424 35186725 -66686444 - AluJb SINE Alu -15 297 1 975 205 31 31 chr13 35187385 35187609 -66685560 + MER58A DNA MER1_type 1 224 0 327 293 81 77 chr13 35187794 35188091 -66685078 - L2 LINE L2 -843 2471 2174 25 0 0 0 chr13 35188476 35188501 -66684668 + AT_rich Low_complexity Low_complexity 1 25 0 3042 162 48 3 chr13 35188555 35189122 -66684047 - L1MD3 LINE L1 0 7995 7404 501 153 71 0 chr13 35189122 35189207 -66683962 - MLT1F1 LTR MaLR -442 125 35 819 226 15 0 chr13 35189218 35189417 -66683752 - L1MC3 LINE L1 -702 7083 6882 213 121 0 0 chr13 35189432 35189465 -66683704 + (TG)n Simple_repeat Simple_repeat 2 34 0 191 103 26 0 chr13 35190322 35190361 -66682808 + T-rich Low_complexity Low_complexity 2 41 0 863 194 37 46 chr13 35191404 35191620 -66681549 - MER58C DNA MER1_type 0 215 2 241 319 78 44 chr13 35192909 35193067 -66680102 + MIR SINE MIR 23 183 -79 281 269 13 87 chr13 35194488 35194637 -66678532 + MIR SINE MIR 75 212 -50 186 373 67 67 chr13 35194712 35194862 -66678307 - L2 LINE L2 0 3272 3123 23 0 0 0 chr13 35194863 35194886 -66678283 + AT_rich Low_complexity Low_complexity 1 23 0 1035 231 9 5 chr13 35195063 35195284 -66677885 - MER58A DNA MER1_type -2 222 1 372 329 13 20 chr13 35195339 35195488 -66677681 - MIR SINE MIR 0 262 115 333 324 140 16 chr13 35195689 35196195 -66676974 + L1M4 LINE L1 4274 4842 -1304 2386 84 3 0 chr13 35196472 35196780 -66676389 - AluSc SINE Alu 0 309 1 292 258 86 12 chr13 35196907 35197070 -66676099 + L1MC4a LINE L1 5199 5373 -773 404 326 130 33 chr13 35197100 35197431 -66675738 + L1MC4a LINE L1 5542 5907 -255 349 253 63 0 chr13 35197727 35197822 -66675347 - MER94 DNA DNA -6 128 28 235 271 12 35 chr13 35197829 35197914 -66675255 - L2 LINE L2 -1407 1907 1825 2408 84 0 7 chr13 35198186 35198495 -66674674 - AluSg SINE Alu -3 307 1 234 190 69 0 chr13 35199783 35199841 -66673328 + MER116 DNA Mariner 18 79 -1 842 84 0 0 chr13 35199941 35200048 -66673121 + U6 snRNA snRNA 1 107 0 2054 117 13 3 chr13 35200048 35200365 -66672804 + L1P LINE L1 2354 2673 -3473 1606 173 22 35 chr13 35200590 35200902 -66672267 + AluJo SINE Alu 1 308 -4 2095 248 214 20 chr13 35200943 35201788 -66671381 + L1MEc LINE L1 409 1509 -4887 2360 95 0 0 chr13 35201788 35202083 -66671086 - AluSc SINE Alu -14 295 1 2095 248 214 20 chr13 35202083 35202310 -66670859 + L1MEc LINE L1 1509 1690 -4706 873 166 40 0 chr13 35202419 35202570 -66670599 - MER47A DNA MER2_type -209 157 1 1259 200 92 19 chr13 35202630 35203015 -66670154 + L1M4 LINE L1 5011 5422 -743 714 213 0 7 chr13 35203039 35203194 -66669975 + L1MA10 LINE L1 6180 6333 -1 367 38 19 293 chr13 35203217 35203323 -66669846 + MADE1 DNA Mariner 1 77 -3 806 220 18 6 chr13 35203712 35203880 -66669289 + MER5A DNA MER1_type 15 184 -5 1141 200 86 40 chr13 35204721 35204949 -66668220 + L1MC5 LINE L1 7501 7756 -205 2284 88 3 3 chr13 35204949 35205246 -66667923 + AluSg SINE Alu 1 297 -13 1141 200 86 40 chr13 35205246 35205412 -66667757 + L1MC5 LINE L1 7756 7913 -48 648 143 20 0 chr13 35205560 35205658 -66667511 - FLAM_C SINE Alu -34 109 10 21 36 0 0 chr13 35205673 35205701 -66667468 + AT_rich Low_complexity Low_complexity 1 28 0 1885 172 21 0 chr13 35206795 35207132 -66666037 - MER2 DNA MER2_type 0 344 1 2131 123 0 3 chr13 35207232 35207534 -66665635 + AluSq SINE Alu 1 301 -12 1362 225 35 24 chr13 35207871 35208240 -66664929 + MLT1A2 LTR MaLR 1 373 -1 3087 193 7 37 chr13 35208243 35208735 -66664434 + MLT1A2-int LTR MaLR 3 471 -1264 2153 127 43 3 chr13 35208735 35209082 -66664087 + MER46B DNA MER2_type 1 236 0 3087 193 7 37 chr13 35209082 35209267 -66663902 + MLT1A2-int LTR MaLR 471 660 -1075 230 207 0 52 chr13 35209329 35209387 -66663782 + MLT1A2-int LTR MaLR 829 883 -488 400 277 0 0 chr13 35209417 35209511 -66663658 + MLT-int LTR MaLR 696 789 -946 * 2220 202 84 55 chr13 35209496 35210065 -66663104 + MLT1A2-int LTR MaLR 1150 1735 0 1403 204 23 67 chr13 35210068 35210456 -66662713 + MLT1A2 LTR MaLR 4 374 0 6189 194 26 12 chr13 35210457 35211411 -66661758 - L1 LINE L1 -912 5234 4294 228 35 0 0 chr13 35211411 35211440 -66661729 + (TG)n Simple_repeat Simple_repeat 2 30 0 6189 194 26 12 chr13 35211440 35211525 -66661644 - L1 LINE L1 -1852 4294 4212 7238 96 17 18 chr13 35211525 35212593 -66660576 + MER11C LTR ERVK 1 1067 -4 6189 194 26 12 chr13 35212593 35212882 -66660287 - L1 LINE L1 -1934 4212 3887 1179 251 42 26 chr13 35212906 35213289 -66659880 - L1ME3A LINE L1 -14 6156 5768 418 231 109 30 chr13 35213344 35213515 -66659654 - L1ME3A LINE L1 -536 5626 5471 2071 136 3 0 chr13 35213525 35213819 -66659350 - AluSx SINE Alu -17 295 1 351 281 136 37 chr13 35213828 35214152 -66659017 - L1ME3A LINE L1 -787 5359 5004 311 188 47 47 chr13 35214198 35214283 -66658886 - L1MC4 LINE L1 -8 8034 7950 486 0 0 0 chr13 35214516 35214570 -66658599 + (CA)n Simple_repeat Simple_repeat 1 54 0 420 296 280 23 chr13 35215258 35215901 -66657268 + L2 LINE L2 1817 2624 -690 1036 196 0 68 chr13 35215901 35216197 -66656972 + L1 LINE L1 4144 4419 -1727 * 2050 132 13 20 chr13 35216189 35216568 -66656601 + L1MA5 LINE L1 5634 6011 -289 1769 107 0 4 chr13 35216817 35217051 -66656118 + AluSg SINE Alu 1 233 -77 1560 197 13 17 chr13 35217098 35217397 -66655772 + AluJb SINE Alu 1 298 -14 2215 95 7 0 chr13 35217397 35217691 -66655478 + AluSg1 SINE Alu 14 309 0 22 35 0 0 chr13 35217691 35217720 -66655449 + AT_rich Low_complexity Low_complexity 1 29 0 2261 112 7 7 chr13 35218577 35218882 -66654287 + AluSq SINE Alu 1 305 -8 1124 212 183 59 chr13 35218988 35219431 -66653738 + MLT1D LTR MaLR 1 498 -7 482 254 25 25 chr13 35220031 35220204 -66652965 + MER4E LTR ERV1 1 282 -590 * 1351 229 34 26 chr13 35220201 35220551 -66652618 + MER4D LTR ERV1 543 895 -8 549 258 101 56 chr13 35222138 35222305 -66650864 + LTR33A LTR ERVL 13 171 -352 2143 131 46 22 chr13 35222305 35222671 -66650498 - THE1C LTR MaLR 0 375 1 549 258 101 56 chr13 35222671 35222897 -66650272 + LTR33A LTR ERVL 171 462 -61 303 217 14 0 chr13 35224071 35224140 -66649029 + L2 LINE L2 3243 3312 -1 1013 156 7 7 chr13 35224836 35225109 -66648060 + MLT1A1 LTR MaLR 1 363 -2 218 282 0 42 chr13 35225160 35225231 -66647938 + MIR SINE MIR 169 236 -26 1268 146 190 4 chr13 35225661 35225929 -66647240 + MLT2C2 LTR ERVL 1 318 -146 612 92 244 17 chr13 35225948 35226067 -66647102 - MER4C LTR ERV1 -18 447 302 1090 153 159 52 chr13 35226140 35226448 -66646721 - MER4A LTR ERV1 -323 341 1 399 180 56 11 chr13 35226448 35226537 -66646632 + MLT2C1 LTR ERVL 248 340 -57 231 167 0 0 chr13 35226551 35226593 -66646576 + (TG)n Simple_repeat Simple_repeat 1 42 0 236 191 0 0 chr13 35226593 35226635 -66646534 + MLT2C2 LTR ERVL 422 463 -1 1890 296 108 26 chr13 35227294 35227442 -66645727 + L2 LINE L2 723 858 -2456 869 152 0 0 chr13 35227442 35227574 -66645595 - FLAM_C SINE Alu -1 132 1 1890 296 108 26 chr13 35227574 35228668 -66644501 + L2 LINE L2 858 2066 -1248 700 173 132 48 chr13 35228684 35228956 -66644213 - L1MC5 LINE L1 -32 7929 7635 445 289 162 53 chr13 35228964 35229046 -66644123 + L2 LINE L2 2057 2129 -1185 2270 71 4 4 chr13 35229046 35229357 -66643812 - AluY SINE Alu 0 311 1 445 289 162 53 chr13 35229357 35229668 -66643501 + L2 LINE L2 2129 2494 -820 575 116 0 0 chr13 35229671 35229757 -66643412 - MLT-int LTR MaLR -221 1514 1429 262 254 30 0 chr13 35229780 35229847 -66643322 + MLT1J LTR MaLR 382 450 -61 253 343 9 0 chr13 35229895 35230003 -66643166 + L2 LINE L2 2496 2604 -710 2206 169 98 7 chr13 35230013 35230432 -66642737 + MSTB2 LTR MaLR 1 457 0 1132 167 57 179 chr13 35230432 35230857 -66642312 - MLT1A1 LTR MaLR -1 364 1 736 286 157 38 chr13 35230858 35231486 -66641683 + L2 LINE L2 2607 3309 -4 1287 194 72 25 chr13 35231513 35231791 -66641378 - AluJo SINE Alu -21 291 1 217 288 0 0 chr13 35232020 35232086 -66641083 + L2 LINE L2 2873 2938 -334 680 258 36 10 chr13 35232383 35232577 -66640592 - MIR SINE MIR -38 224 26 308 194 0 15 chr13 35232608 35232675 -66640494 + MIR SINE MIR 191 256 -6 263 340 0 0 chr13 35232696 35232793 -66640376 + L2 LINE L2 2751 2847 -467 344 31 31 31 chr13 35232808 35232872 -66640297 + (TA)n Simple_repeat Simple_repeat 1 64 0 598 196 103 58 chr13 35232878 35233102 -66640067 - LOR1-int LTR ERV1 -6426 1694 1461 3833 172 27 56 chr13 35233114 35234011 -66639158 - LTR67-int LTR ERVL -4163 1180 310 1672 159 65 17 chr13 35234162 35234395 -66638774 - LTR64 LTR ERVK -29 529 309 2143 117 3 7 chr13 35234395 35234693 -66638476 - AluSx SINE Alu -15 297 1 1672 159 65 17 chr13 35234693 35234899 -66638270 - LTR64 LTR ERVK -249 309 5 463 237 50 14 chr13 35235160 35235299 -66637870 - LTR67 LTR ERVL -6 551 408 1951 172 23 48 chr13 35235727 35236123 -66637046 - MLT1B LTR MaLR -4 386 1 296 259 0 0 chr13 35236310 35236391 -66636778 + MER5A DNA MER1_type 26 106 -83 606 215 74 6 chr13 35236793 35236956 -66636213 + MIR SINE MIR 89 262 0 183 368 32 0 chr13 35238246 35238341 -66634828 + L2 LINE L2 2952 3049 -223 954 221 21 21 chr13 35238374 35238614 -66634555 + MLT2D LTR ERVL 6 245 -169 2690 119 19 67 chr13 35238668 35239289 -66633880 + MER4E LTR ERV1 1 765 -1 773 155 42 48 chr13 35239293 35239461 -66633708 + MLT2C1 LTR ERVL 231 397 0 339 247 40 40 chr13 35239544 35239694 -66633475 + L2 LINE L2 3164 3313 0 2456 95 0 0 chr13 35239747 35240051 -66633118 - AluSc SINE Alu -3 306 3 658 213 8 0 chr13 35240101 35240228 -66632941 + FRAM SINE Alu 1 128 -48 2530 81 32 46 chr13 35240271 35240591 -66632578 + THE1B LTR MaLR 1 317 -47 2044 143 0 7 chr13 35240591 35240891 -66632278 + AluSx SINE Alu 1 298 -14 2530 81 32 46 chr13 35240891 35240939 -66632230 + THE1B LTR MaLR 317 364 0 809 250 148 17 chr13 35240946 35241447 -66631722 + L2 LINE L2 2688 3239 -74 245 29 0 29 chr13 35241484 35241519 -66631650 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 184 279 0 0 chr13 35241716 35241759 -66631410 + L2 LINE L2 3252 3294 -19 21 36 0 0 chr13 35242076 35242104 -66631065 + AT_rich Low_complexity Low_complexity 1 28 0 3429 95 12 16 chr13 35242334 35242829 -66630340 - LTR15 LTR ERV1 0 493 1 963 169 79 0 chr13 35242888 35243066 -66630103 - LTR47A LTR ERVL 0 452 261 569 198 0 52 chr13 35243313 35243429 -66629740 - PABL_B-int LTR ERV1 -681 6077 5968 500 395 7 3 chr13 35243606 35243895 -66629274 - PABL_B-int LTR ERV1 -437 6685 6396 22 0 0 0 chr13 35244073 35244095 -66629074 + AT_rich Low_complexity Low_complexity 1 22 0 282 234 89 81 chr13 35244460 35244584 -66628585 - PABL_B-int LTR ERV1 -1365 5757 5633 578 346 65 48 chr13 35245268 35246591 -66626578 - HERVL32 LTR ERVL -1264 4079 2728 2840 86 11 0 chr13 35246876 35247247 -66625922 + THE1C LTR MaLR 1 375 0 1456 229 36 87 chr13 35247393 35247675 -66625494 - LTR34 LTR ERV1 -4 695 449 1694 188 16 10 chr13 35247675 35247979 -66625190 + AluJo SINE Alu 3 308 -4 1456 229 36 87 chr13 35247979 35248216 -66624953 - LTR34 LTR ERV1 -250 449 202 258 231 0 0 chr13 35248225 35248277 -66624892 - MER4A LTR ERV1 -477 187 136 453 194 37 19 chr13 35248361 35248469 -66624700 - MER4C LTR ERV1 -351 114 5 621 295 21 24 chr13 35248492 35248758 -66624411 - HERVL32 LTR ERVL -1095 2323 2033 2429 109 0 0 chr13 35248791 35249103 -66624066 + AluSx SINE Alu 1 312 0 1564 181 0 15 chr13 35249108 35249159 -66624010 + AluJb SINE Alu 1 51 -261 4397 80 14 4 chr13 35249159 35249722 -66623447 - MER61E LTR ERV1 0 569 1 1564 181 0 15 chr13 35249722 35249930 -66623239 + AluJb SINE Alu 51 256 -56 366 338 53 32 chr13 35249962 35250398 -66622771 - HERVL32 LTR ERVL -1321 2097 1666 825 169 107 23 chr13 35252084 35252261 -66620908 - LTR47A LTR ERVL 0 452 261 1247 168 35 10 chr13 35252457 35252660 -66620509 + MER77 LTR ERV1 1 208 -397 1941 219 27 22 chr13 35252736 35253142 -66620027 + MER77 LTR ERV1 196 603 -2 1873 197 63 40 chr13 35254180 35254475 -66618694 + L1M4 LINE L1 4846 5133 -1051 2291 112 3 0 chr13 35254475 35254779 -66618390 + AluSp SINE Alu 2 306 -7 1873 197 63 40 chr13 35254779 35255358 -66617811 + L1M4 LINE L1 5133 5732 -452 3160 116 49 61 chr13 35255362 35255949 -66617220 + MER39B LTR ERV1 6 585 -68 595 144 33 0 chr13 35255949 35256070 -66617099 - FLAM_A SINE Alu 0 149 26 1018 188 31 0 chr13 35256070 35256262 -66616907 + L1MB8 LINE L1 5369 5566 -618 263 259 19 0 chr13 35256294 35256348 -66616821 + LTR48B LTR ERV1 590 644 0 714 81 0 0 chr13 35256348 35256447 -66616722 + L1MB8 LINE L1 5730 5828 -350 * 21441 99 25 38 chr13 35256443 35261885 -66611284 + L1MA3 LINE L1 1 5513 -2211 2086 147 0 0 chr13 35261885 35262185 -66610984 + AluSx SINE Alu 1 300 -12 21441 99 25 38 chr13 35262185 35263608 -66609561 + L1MA3 LINE L1 5513 7072 -652 2298 105 10 0 chr13 35263608 35263903 -66609266 - AluSq SINE Alu -15 298 1 21441 99 25 38 chr13 35263903 35264548 -66608621 + L1MA3 LINE L1 7072 7724 0 1483 164 94 30 chr13 35264558 35264887 -66608282 + L1MB8 LINE L1 5813 6162 -16 1490 191 4 8 chr13 35265091 35265347 -66607822 + ERVL LTR ERVL 1825 2079 -3685 1969 179 121 14 chr13 35265350 35265763 -66607406 + MLT2B1 LTR ERVL 4 460 -60 426 108 0 0 chr13 35265768 35265842 -66607327 + (TC)n Simple_repeat Simple_repeat 2 75 0 904 128 17 0 chr13 35265854 35266003 -66607166 + ERVL LTR ERVL 2043 2196 -3289 1029 123 0 109 chr13 35266344 35266555 -66606614 - MER5A DNA MER1_type -1 188 1 508 258 113 20 chr13 35266757 35267005 -66606164 + L2 LINE L2 3043 3313 0 556 192 0 0 chr13 35267234 35267333 -66605836 + AluJ/FLAM SINE Alu 2 100 -212 973 133 0 0 chr13 35267336 35267471 -66605698 + AluJo/FRAM SINE Alu 167 301 -11 613 183 17 0 chr13 35268564 35268684 -66604485 + L2 LINE L2 3192 3313 0 1935 199 82 23 chr13 35269176 35269774 -66603395 - MER39 LTR ERV1 0 707 1 5059 147 63 1 chr13 35269823 35270600 -66602569 - LTR1B LTR ERV1 0 826 2 497 202 0 0 chr13 35270725 35270809 -66602360 + LTR8 LTR ERV1 608 691 0 702 249 64 49 chr13 35270818 35271083 -66602086 + HAL1 LINE L1 2158 2426 -81 3414 140 24 34 chr13 35271110 35271701 -66601468 - MER34C LTR ERV1 0 585 1 297 315 0 18 chr13 35271729 35271757 -66601412 + (TA)n Simple_repeat Simple_repeat 2 29 -81 4209 104 7 0 chr13 35271757 35272307 -66600862 - MER41A LTR ERV1 0 554 1 297 315 0 18 chr13 35272307 35272389 -66600780 + (TA)n Simple_repeat Simple_repeat 29 110 0 1123 188 68 34 chr13 35272693 35272959 -66600210 + ORSL DNA AcHobo 1 275 0 187 286 13 13 chr13 35273195 35273272 -66599897 - MIR SINE MIR -150 112 36 3587 71 0 11 chr13 35273435 35273888 -66599281 - LTR7 LTR ERV1 -2 448 1 2205 145 20 6 chr13 35273987 35274339 -66598830 - MLT1A1 LTR MaLR -8 357 1 258 169 169 0 chr13 35275309 35275368 -66597801 + Tigger2 DNA MER2_type 1 69 -2649 * 2431 123 74 42 chr13 35275358 35275790 -66597379 + Tigger2 DNA MER2_type 2273 2718 0 22 0 0 0 chr13 35275842 35275864 -66597305 + AT_rich Low_complexity Low_complexity 1 22 0 247 287 9 52 chr13 35275954 35276069 -66597100 + MIR SINE MIR 97 206 -56 3809 143 61 53 chr13 35276138 35276905 -66596264 + MER4D LTR ERV1 1 773 -130 4296 35 19 0 chr13 35276905 35277384 -66595785 + LTR2B LTR ERV1 1 488 -2 944 104 17 7 chr13 35277485 35277634 -66595535 + THE1C LTR MaLR 237 375 0 983 194 99 12 chr13 35277654 35277907 -66595262 - MLT1A2 LTR MaLR 0 374 100 3244 170 50 22 chr13 35278120 35278587 -66594582 + LTR26E LTR ERV1 3 492 -130 2184 112 7 0 chr13 35278587 35278882 -66594287 - AluSc SINE Alu -12 297 1 3244 170 50 22 chr13 35278882 35279015 -66594154 + LTR26E LTR ERV1 492 620 -2 3604 146 70 66 chr13 35279457 35280181 -66592988 - LTR8A LTR ERV1 0 727 1 216 0 0 0 chr13 35280228 35280252 -66592917 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1353 119 5 15 chr13 35280375 35280576 -66592593 - AluSq SINE Alu -114 199 1 1668 181 10 23 chr13 35280576 35280879 -66592290 - AluJb SINE Alu -13 299 1 850 183 80 0 chr13 35282050 35282225 -66590944 - MER53 DNA DNA 0 189 1 2036 148 0 3 chr13 35282735 35283032 -66590137 + AluSx SINE Alu 1 296 -16 891 223 6 0 chr13 35283033 35283199 -66589970 + AluJb SINE Alu 132 298 -14 562 66 0 13 chr13 35283606 35283682 -66589487 - MADE1 DNA Mariner 0 80 6 4464 188 59 17 chr13 35284077 35284905 -66588264 + MER21B LTR ERV1 1 863 0 192 280 0 40 chr13 35285086 35285136 -66588033 - L2 LINE L2 -25 3288 3241 2033 135 3 7 chr13 35285240 35285543 -66587626 + AluSx SINE Alu 1 302 -10 377 229 57 57 chr13 35286213 35286388 -66586781 + Charlie2 DNA MER1_type 94 268 -2514 2161 88 4 0 chr13 35286388 35286662 -66586507 + AluSp SINE Alu 25 299 -14 1326 134 9 209 chr13 35286877 35287302 -66585867 + THE1A LTR MaLR 1 340 -15 538 219 0 41 chr13 35287323 35287446 -66585723 + Charlie2a DNA MER1_type 1511 1628 -1234 578 207 36 7 chr13 35287461 35287601 -66585568 + Charlie2a DNA MER1_type 2719 2862 0 1937 64 0 0 chr13 35287806 35288040 -66585129 - L1MA2 LINE L1 0 6304 6071 242 283 0 124 chr13 35288128 35288241 -66584928 + L2 LINE L2 3169 3267 -5 187 214 79 67 chr13 35289038 35289127 -66584042 - MIR SINE MIR -170 92 3 1701 189 34 99 chr13 35289211 35289568 -66583601 + LTR56 LTR ERV1 1 321 -124 1948 168 0 0 chr13 35289568 35289866 -66583303 + AluJo SINE Alu 14 311 -1 1701 189 34 99 chr13 35289866 35289984 -66583185 + LTR56 LTR ERV1 321 445 0 354 318 101 61 chr13 35290951 35291149 -66582020 - L2 LINE L2 0 3272 3067 1687 230 47 12 chr13 35291166 35291574 -66581595 - LTR40c LTR ERVL 0 465 44 232 273 26 26 chr13 35291895 35291972 -66581197 + MIR SINE MIR 88 164 -98 315 104 0 0 chr13 35292044 35292092 -66581077 + (CAT)n Simple_repeat Simple_repeat 1 48 0 2285 110 0 0 chr13 35292430 35292730 -66580439 + AluY SINE Alu 3 302 -9 289 167 0 0 chr13 35292765 35292807 -66580362 - AluSg/x SINE Alu -49 251 210 * 757 211 199 23 chr13 35292804 35293065 -66580104 - MER69 DNA AcHobo -815 411 105 2257 217 166 15 chr13 35293114 35293781 -66579388 - MER69 DNA AcHobo -1734 792 25 189 74 0 0 chr13 35294030 35294057 -66579112 + (TG)n Simple_repeat Simple_repeat 1 27 0 284 202 250 0 chr13 35294476 35294580 -66578589 - MIR SINE MIR -10 252 123 579 107 12 0 chr13 35295045 35295129 -66578040 + L1PB3 LINE L1 6064 6148 -6 1698 167 0 7 chr13 35295156 35295432 -66577737 - AluJb SINE Alu -17 295 22 22 0 0 0 chr13 35295432 35295454 -66577715 + AT_rich Low_complexity Low_complexity 1 22 0 2288 102 0 7 chr13 35295470 35295775 -66577394 + AluSx SINE Alu 1 303 -9 369 254 69 8 chr13 35295792 35295922 -66577247 - L1ME4a LINE L1 -50 6071 5934 22 0 0 0 chr13 35296614 35296636 -66576533 + AT_rich Low_complexity Low_complexity 1 22 0 1636 185 7 7 chr13 35296795 35297092 -66576077 - AluJo SINE Alu 0 312 16 197 294 22 65 chr13 35297382 35297474 -66575695 + MER5A DNA MER1_type 22 109 -80 301 235 39 39 chr13 35297523 35297625 -66575544 + MIR SINE MIR 48 149 -59 390 268 71 42 chr13 35297695 35297804 -66575365 + MIR SINE MIR 90 207 -55 2031 205 48 34 chr13 35297804 35298064 -66575105 - MLT1D LTR MaLR 0 505 233 183 42 0 0 chr13 35298064 35298088 -66575081 + (CACAT)n Simple_repeat Simple_repeat 5 28 0 2031 205 48 34 chr13 35298088 35298325 -66574844 - MLT1D LTR MaLR -272 233 1 390 268 71 42 chr13 35298325 35298383 -66574786 + MIR SINE MIR 207 262 0 211 229 83 0 chr13 35298761 35298809 -66574360 - L2 LINE L2 0 3313 3262 236 32 32 0 chr13 35299018 35299049 -66574120 + L2 LINE L2 3263 3294 -19 322 285 49 59 chr13 35299627 35299822 -66573347 - MIR SINE MIR -50 212 17 875 263 133 16 chr13 35300743 35301051 -66572118 + L1MC4 LINE L1 6542 6961 -923 1099 166 90 11 chr13 35301175 35301452 -66571717 - AluSp SINE Alu 0 303 5 208 234 0 0 chr13 35302461 35302508 -66570661 + (CA)n Simple_repeat Simple_repeat 1 47 0 1070 192 47 0 chr13 35302983 35303176 -66569993 - MER20 DNA MER1_type 0 219 18 21 0 0 0 chr13 35304018 35304039 -66569130 + AT_rich Low_complexity Low_complexity 1 21 0 390 282 0 27 chr13 35304258 35304369 -66568800 - MIR3 SINE MIR -21 187 79 2432 89 3 0 chr13 35304755 35305057 -66568112 - AluSx SINE Alu -9 303 1 26 0 0 0 chr13 35306275 35306301 -66566868 + AT_rich Low_complexity Low_complexity 1 26 0 1340 174 81 0 chr13 35307017 35307275 -66565894 - AluJo SINE Alu -20 292 14 5168 178 76 2 chr13 35307513 35308538 -66564631 - L1MD2 LINE L1 -2 6357 5257 1269 74 0 12 chr13 35308659 35308821 -66564348 - AluSc SINE Alu -149 160 1 323 222 38 113 chr13 35308825 35309010 -66564159 - L1MD2 LINE L1 -1103 5043 4873 4656 223 42 20 chr13 35309020 35310367 -66562802 - L1MD2 LINE L1 -2217 3929 2553 449 316 24 11 chr13 35310878 35311226 -66561943 + L1MEc LINE L1 1319 1712 -864 300 244 35 12 chr13 35311544 35311630 -66561539 - MLT1H LTR MaLR -4 545 458 385 221 222 59 chr13 35311737 35312051 -66561118 - MLT1H LTR MaLR -192 403 39 263 299 65 30 chr13 35312257 35312628 -66560541 + L1MEc LINE L1 2179 2562 -3653 913 78 23 0 chr13 35312844 35312972 -66560197 + L1MA5 LINE L1 6168 6298 -2 513 205 71 104 chr13 35312974 35313275 -66559894 + L1MEc LINE L1 3841 4136 -2079 2249 80 42 0 chr13 35313498 35313786 -66559383 + AluY SINE Alu 1 300 -11 1704 238 23 10 chr13 35313847 35314233 -66558936 - MLT1J LTR MaLR -120 391 1 7106 175 162 30 chr13 35314311 35315839 -66557330 - MER52A LTR ERV1 0 1755 26 24 24 0 24 chr13 35316537 35316567 -66556602 + AT_rich Low_complexity Low_complexity 1 31 -10 2007 145 0 3 chr13 35316567 35316856 -66556313 - AluSx SINE Alu -24 288 1 24 24 0 24 chr13 35316856 35316867 -66556302 + AT_rich Low_complexity Low_complexity 31 41 0 24 0 0 0 chr13 35316928 35316952 -66556217 + AT_rich Low_complexity Low_complexity 1 24 0 1618 160 71 11 chr13 35317017 35317299 -66555870 - AluJo SINE Alu -13 299 1 258 171 55 226 chr13 35317921 35318120 -66555049 - MER112 DNA MER1_type 0 260 96 462 75 0 0 chr13 35318124 35318191 -66554978 + (TA)n Simple_repeat Simple_repeat 1 67 0 446 240 187 35 chr13 35318195 35318478 -66554691 - L1M4 LINE L1 -811 5335 5010 397 271 226 6 chr13 35319020 35319197 -66553972 + MIR SINE MIR 21 236 -26 209 333 0 0 chr13 35319887 35319944 -66553225 + CT-rich Low_complexity Low_complexity 3 59 0 27 0 0 0 chr13 35320873 35320900 -66552269 + AT_rich Low_complexity Low_complexity 1 27 0 840 261 104 24 chr13 35322024 35322400 -66550769 - Tigger8 DNA MER2_type -164 502 97 1435 108 50 67 chr13 35323429 35323669 -66549500 - MER46A DNA MER2_type 0 236 1 555 236 42 14 chr13 35324424 35324568 -66548601 + MIR SINE MIR 48 195 -67 24 0 0 0 chr13 35324912 35324936 -66548233 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr13 35325067 35325091 -66548078 + (TA)n Simple_repeat Simple_repeat 2 25 0 230 284 0 54 chr13 35325248 35325322 -66547847 + MIR SINE MIR 20 89 -119 1626 218 102 14 chr13 35325355 35325778 -66547391 - MLT1C LTR MaLR -2 465 6 1834 177 134 17 chr13 35326831 35327249 -66545920 + MLT1C LTR MaLR 1 467 0 255 31 0 0 chr13 35327443 35327475 -66545694 + (TC)n Simple_repeat Simple_repeat 2 33 0 256 268 114 57 chr13 35328584 35328707 -66544462 + MIR3 SINE MIR 72 201 -7 2703 170 78 0 chr13 35329079 35329543 -66543626 + Tigger7 DNA MER2_type 1 500 -233 969 137 160 0 chr13 35329542 35329717 -66543452 + Tigger7 DNA MER2_type 2284 2486 -1 * 257 348 26 0 chr13 35329720 35329835 -66543334 + L1MEd LINE L1 716 833 -5286 368 169 67 0 chr13 35330157 35330246 -66542923 + L1ME3A LINE L1 5857 5951 -211 355 261 59 26 chr13 35330263 35330416 -66542753 + L1ME3A LINE L1 6013 6170 0 210 277 0 0 chr13 35330440 35330487 -66542682 - MIR SINE MIR -64 144 98 454 207 164 92 chr13 35332110 35332536 -66540633 + L1ME4a LINE L1 5517 5973 -148 257 118 132 15 chr13 35332556 35332624 -66540545 + L1ME4a LINE L1 6046 6121 0 22 0 0 0 chr13 35333821 35333843 -66539326 + AT_rich Low_complexity Low_complexity 1 22 0 1850 166 20 0 chr13 35334349 35334645 -66538524 - AluJb SINE Alu -10 302 1 2156 98 39 0 chr13 35334996 35335281 -66537888 + AluSx SINE Alu 1 296 -16 232 210 0 160 chr13 35338496 35338596 -66534573 - MIR SINE MIR -131 131 48 204 135 0 0 chr13 35338624 35338661 -66534508 + (A)n Simple_repeat Simple_repeat 1 37 0 226 312 192 40 chr13 35339208 35339702 -66533467 - L2 LINE L2 -339 2975 2407 1943 141 0 33 chr13 35339844 35340148 -66533021 + AluJb SINE Alu 1 294 -18 262 293 8 49 chr13 35341088 35341211 -66531958 - MLT1K LTR MaLR -6 582 465 202 177 16 16 chr13 35341226 35341288 -66531881 + CT-rich Low_complexity Low_complexity 1 62 0 459 267 79 92 chr13 35341288 35341580 -66531589 - MLT1K LTR MaLR -158 430 143 1216 206 111 49 chr13 35341604 35341948 -66531221 - MLT1A1 LTR MaLR 0 365 1 457 278 94 17 chr13 35342344 35342524 -66530645 - L1MC/D LINE L1 -2159 5649 5456 1316 158 48 90 chr13 35343182 35343492 -66529677 - AluJo SINE Alu -15 297 1 2005 145 7 0 chr13 35343496 35343792 -66529377 - AluSx SINE Alu -12 300 3 510 241 194 24 chr13 35344196 35344393 -66528776 + MIR SINE MIR 36 261 -1 185 222 0 67 chr13 35344403 35344448 -66528721 + MIR SINE MIR 215 256 -6 467 264 8 8 chr13 35347957 35348078 -66525091 - LTR28 LTR ERV1 0 1020 900 1609 216 84 121 chr13 35348118 35348938 -66524231 - LTR28 LTR ERV1 -39 981 1 1342 230 37 74 chr13 35349070 35349527 -66523642 + L1MC5 LINE L1 6928 7367 -594 726 99 0 187 chr13 35349554 35349626 -66523543 - MER57A LTR ERV1 -264 139 116 2901 83 0 0 chr13 35349626 35349988 -66523181 - L1PA7 LINE L1 0 6154 5793 726 99 0 187 chr13 35349988 35350086 -66523083 - MER57A LTR ERV1 -287 116 1 1669 91 5 0 chr13 35350086 35350306 -66522863 - MER4B LTR ERV1 -389 221 1 321 352 6 19 chr13 35350425 35350587 -66522582 - L1M4 LINE L1 -2258 3888 3729 199 288 14 27 chr13 35350678 35350751 -66522418 - MIR3 SINE MIR -52 156 85 1467 188 40 24 chr13 35350796 35350976 -66522193 - AluJo SINE Alu -9 303 115 477 0 0 0 chr13 35350976 35351029 -66522140 + (TG)n Simple_repeat Simple_repeat 2 54 0 1467 188 40 24 chr13 35351029 35351146 -66522023 - AluJo SINE Alu -197 115 1 190 321 18 73 chr13 35351166 35351331 -66521838 + L2 LINE L2 2509 2664 -650 411 312 96 0 chr13 35351475 35351600 -66521569 + MIR3 SINE MIR 10 146 -62 3603 121 61 113 chr13 35351631 35352398 -66520771 - MER4E LTR ERV1 0 779 53 1390 143 0 0 chr13 35352398 35352607 -66520562 + AluSg/x SINE Alu 94 302 -10 2441 159 72 13 chr13 35352640 35353099 -66520070 - L1MA8 LINE L1 0 6291 5806 2979 142 43 2 chr13 35353100 35353985 -66519184 + L1M2 LINE L1 4853 5769 -522 1412 116 0 0 chr13 35354147 35354337 -66518832 - AluSq SINE Alu -123 190 1 208 290 108 32 chr13 35354610 35354703 -66518466 - MIR SINE MIR -78 130 31 2028 267 79 38 chr13 35355125 35355479 -66517690 - L2 LINE L2 -1106 2208 1870 2044 163 0 0 chr13 35355479 35355779 -66517390 + AluSx SINE Alu 1 300 -12 2028 267 79 38 chr13 35355779 35356161 -66517008 - L2 LINE L2 -1444 1870 1442 370 258 225 0 chr13 35356583 35356703 -66516466 + MIR SINE MIR 102 248 -14 249 261 34 0 chr13 35356779 35356867 -66516302 + L1MD3 LINE L1 7881 7971 -24 199 240 100 0 chr13 35357113 35357163 -66516006 - L2 LINE L2 -2918 396 342 432 308 125 44 chr13 35359380 35359701 -66513468 + L2 LINE L2 2859 3205 -108 651 249 103 28 chr13 35359784 35360037 -66513132 - L2 LINE L2 0 3313 3042 1541 159 26 55 chr13 35360835 35361143 -66512026 + AluJb SINE Alu 1 299 -13 216 139 116 0 chr13 35362924 35362967 -66510202 + L2 LINE L2 3262 3309 -4 897 253 88 5 chr13 35363394 35363687 -66509482 - L1ME2 LINE L1 -29 6135 5818 1822 174 83 60 chr13 35363819 35364073 -66509096 - MLT1C LTR MaLR -19 448 178 2320 77 0 3 chr13 35364073 35364359 -66508810 - AluSg SINE Alu -21 289 5 1822 174 83 60 chr13 35364359 35364540 -66508629 - MLT1C LTR MaLR -289 178 3 243 0 0 0 chr13 35365471 35365498 -66507671 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 288 0 0 0 chr13 35365497 35365529 -66507640 + (TG)n Simple_repeat Simple_repeat 2 33 0 547 296 110 19 chr13 35365603 35365897 -66507272 - L2 LINE L2 -690 2624 2299 2487 64 3 0 chr13 35365897 35366192 -66506977 - AluSp SINE Alu -17 296 1 547 296 110 19 chr13 35366192 35366205 -66506964 - L2 LINE L2 -1015 2299 2289 823 224 51 31 chr13 35366212 35366669 -66506500 - MER115 DNA AcHobo -2 691 140 989 285 133 21 chr13 35367285 35367758 -66505411 - L2 LINE L2 -1061 2253 1728 476 130 0 0 chr13 35367777 35367846 -66505323 + (TCCCC)n Simple_repeat Simple_repeat 3 71 0 186 43 0 0 chr13 35367991 35368014 -66505155 + (TCCCC)n Simple_repeat Simple_repeat 2 24 0 316 56 56 0 chr13 35368024 35368078 -66505091 + T-rich Low_complexity Low_complexity 1 57 0 181 239 75 0 chr13 35368093 35368160 -66505009 - L2 LINE L2 -1633 1681 1610 25 0 0 0 chr13 35368677 35368702 -66504467 + AT_rich Low_complexity Low_complexity 1 25 0 436 281 179 23 chr13 35368912 35369347 -66503822 + L1ME4a LINE L1 5318 5820 -301 495 155 155 27 chr13 35369425 35369573 -66503596 + L1ME4a LINE L1 5955 6121 0 242 191 0 16 chr13 35369706 35369769 -66503400 - L1ME4a LINE L1 -1 6120 6059 535 259 25 43 chr13 35370154 35370316 -66502853 + L2 LINE L2 3152 3310 -3 600 279 80 35 chr13 35370553 35370779 -66502390 - MIR SINE MIR -26 236 1 1000 245 64 50 chr13 35370807 35371243 -66501926 - L2 LINE L2 0 3313 2872 426 96 24 12 chr13 35371377 35371453 -66501716 + (GA)n Simple_repeat Simple_repeat 1 80 -4 243 0 0 0 chr13 35371453 35371480 -66501689 + (TG)n Simple_repeat Simple_repeat 1 27 0 426 96 24 12 chr13 35371480 35371486 -66501683 + (GA)n Simple_repeat Simple_repeat 80 84 0 2760 286 157 5 chr13 35371486 35371509 -66501660 - L2 LINE L2 -650 2664 2646 315 0 0 0 chr13 35371509 35371544 -66501625 + (TG)n Simple_repeat Simple_repeat 1 35 0 2760 286 157 5 chr13 35371544 35372754 -66500415 - L2 LINE L2 -668 2646 1243 313 257 81 14 chr13 35375018 35375092 -66498077 + L2 LINE L2 3171 3249 -23 6238 129 29 6 chr13 35376035 35377178 -66495991 - L1MC1 LINE L1 0 6333 5172 1177 213 75 57 chr13 35377189 35377407 -66495762 + MSTB2 LTR MaLR 1 214 -243 2083 112 3 7 chr13 35377407 35377693 -66495476 + AluSg SINE Alu 1 285 -25 1177 213 75 57 chr13 35377693 35377916 -66495253 + MSTB2 LTR MaLR 214 450 -7 2573 41 0 25 chr13 35378531 35378847 -66494322 - AluY SINE Alu -3 308 1 1842 149 24 17 chr13 35378847 35379142 -66494027 - AluSx SINE Alu -11 301 5 270 190 35 0 chr13 35379152 35379210 -66493959 + MER5B DNA MER1_type 119 178 0 2170 124 0 7 chr13 35380491 35380797 -66492372 + AluSc SINE Alu 1 304 -5 24 0 0 0 chr13 35381143 35381167 -66492002 + AT_rich Low_complexity Low_complexity 1 24 0 1182 234 104 3 chr13 35381731 35382030 -66491139 + L2 LINE L2 2970 3298 -15 30 0 0 0 chr13 35382991 35383021 -66490148 + AT_rich Low_complexity Low_complexity 1 30 0 556 171 86 34 chr13 35383033 35383150 -66490019 - FRAM SINE Alu -46 130 8 2078 120 3 0 chr13 35383163 35383481 -66489688 - AluSx SINE Alu 0 319 1 365 271 34 73 chr13 35384008 35384185 -66488984 - L1M4 LINE L1 -1645 4501 4332 27 62 0 0 chr13 35384239 35384287 -66488882 + AT_rich Low_complexity Low_complexity 1 48 0 1395 126 15 0 chr13 35384473 35384671 -66488498 - 7SLRNA srpRNA srpRNA -119 201 1 556 143 0 0 chr13 35385417 35385501 -66487668 + MSTB LTR MaLR 1 84 -342 297 192 0 0 chr13 35385502 35385554 -66487615 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385555 35385607 -66487562 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385608 35385660 -66487509 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385661 35385713 -66487456 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385714 35385766 -66487403 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385767 35385819 -66487350 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385820 35385872 -66487297 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385873 35385925 -66487244 + MSTB LTR MaLR 33 84 -342 303 173 0 0 chr13 35385926 35385978 -66487191 + MSTB LTR MaLR 33 84 -342 278 192 0 0 chr13 35385979 35386031 -66487138 + MSTB LTR MaLR 33 84 -342 278 192 0 0 chr13 35386032 35386084 -66487085 + MSTB LTR MaLR 33 84 -342 267 231 0 0 chr13 35386085 35386137 -66487032 + MSTB LTR MaLR 33 84 -342 2225 169 8 13 chr13 35386188 35386584 -66486585 + MSTB LTR MaLR 33 426 0 305 302 30 23 chr13 35387397 35387517 -66485652 + MIR SINE MIR 43 154 -66 253 306 122 10 chr13 35387562 35387660 -66485509 - MIR3 SINE MIR -13 195 87 585 193 8 8 chr13 35387665 35387784 -66485385 - FLAM_A SINE Alu -10 132 14 691 216 45 6 chr13 35387905 35388081 -66485088 + MER105 DNA DNA 2 184 -20 2191 131 3 3 chr13 35388286 35388598 -66484571 - AluSx SINE Alu 0 312 1 655 184 0 16 chr13 35389426 35389551 -66483618 - FAM SINE Alu -8 41 1 927 241 63 25 chr13 35389929 35390248 -66482921 - MER46C DNA MER2_type -7 331 1 894 316 95 34 chr13 35390315 35390695 -66482474 + L2 LINE L2 2884 3286 -27 524 319 215 5 chr13 35390977 35391370 -66481799 - L2 LINE L2 -243 3070 2588 410 267 26 0 chr13 35391502 35391618 -66481551 - L2 LINE L2 -1023 2291 2173 29 28 0 0 chr13 35393097 35393133 -66480036 + AT_rich Low_complexity Low_complexity 1 36 0 1212 112 93 0 chr13 35393714 35393929 -66479240 + L1MA4 LINE L1 6066 6300 0 231 221 174 0 chr13 35394071 35394157 -66479012 - Charlie7 DNA MER1_type -2510 102 2 1954 159 0 3 chr13 35394345 35394635 -66478534 - AluJo SINE Alu -18 294 6 22 0 0 0 chr13 35396347 35396369 -66476800 + AT_rich Low_complexity Low_complexity 1 22 0 399 209 70 76 chr13 35397376 35397534 -66475635 + Charlie2a DNA MER1_type 1507 1663 -1199 381 206 71 35 chr13 35397534 35397675 -66475494 + Charlie2a DNA MER1_type 2716 2861 -1 1339 231 67 71 chr13 35397832 35398369 -66474800 + MLT1F LTR MaLR 1 535 -7 1226 212 13 0 chr13 35398409 35398635 -66474534 + AluJo SINE Alu 1 229 -83 32 0 0 0 chr13 35398661 35398693 -66474476 + AT_rich Low_complexity Low_complexity 1 32 0 2303 230 85 51 chr13 35399132 35399897 -66473272 + MER21B LTR ERV1 19 809 -54 188 163 23 0 chr13 35399914 35399957 -66473212 + (TA)n Simple_repeat Simple_repeat 1 44 0 195 42 0 0 chr13 35401987 35402011 -66471158 + (T)n Simple_repeat Simple_repeat 1 24 0 40844 31 21 2 chr13 35402019 35408037 -66465132 - L1HS LINE L1 -7 6148 12 216 0 0 0 chr13 35408610 35408634 -66464535 + (A)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr13 35408738 35408763 -66464406 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr13 35409513 35409544 -66463625 + AT_rich Low_complexity Low_complexity 1 31 0 446 303 11 28 chr13 35410251 35410429 -66462740 + L1ME3A LINE L1 5987 6161 -9 4685 159 40 22 chr13 35410618 35411170 -66461999 + L1MB7 LINE L1 4765 5305 -879 1903 162 0 3 chr13 35411170 35411460 -66461709 + AluJb SINE Alu 3 291 -21 2346 110 0 0 chr13 35411462 35411772 -66461397 + AluSg SINE Alu 1 310 0 4685 159 40 22 chr13 35411772 35412590 -66460579 + L1MB7 LINE L1 5305 6175 -9 1832 167 11 3 chr13 35412625 35412912 -66460257 - AluJb SINE Alu -23 289 1 2043 100 14 4 chr13 35413321 35413700 -66459469 + AluSx SINE Alu 1 382 0 1117 176 59 0 chr13 35414054 35414258 -66458911 - MER21B LTR ERV1 -371 492 277 457 56 0 14 chr13 35414270 35414342 -66458827 - L1PB1 LINE L1 -12 6139 6069 21 0 0 0 chr13 35414587 35414608 -66458561 + AT_rich Low_complexity Low_complexity 1 21 0 895 190 27 0 chr13 35414912 35415096 -66458073 - MER5A DNA MER1_type 0 189 1 7418 169 63 37 chr13 35415402 35417058 -66456111 + MER52A LTR ERV1 37 1735 -20 741 209 15 0 chr13 35417086 35417220 -66455949 - MIR SINE MIR -109 153 18 970 284 166 41 chr13 35418233 35419100 -66454069 + L2 LINE L2 2264 3273 -40 536 274 146 24 chr13 35419346 35419558 -66453611 + MIR SINE MIR 2 239 -23 2817 103 86 0 chr13 35419566 35419994 -66453175 + MER4C LTR ERV1 1 465 0 980 302 50 9 chr13 35420840 35421420 -66451749 + L1M4 LINE L1 3074 3677 -2469 * 11885 131 42 33 chr13 35421416 35423679 -66449490 + L1M LINE L1 3089 5376 -803 279 223 75 21 chr13 35423742 35423836 -66449333 + HAL1 LINE L1 8 106 -2401 512 115 0 26 chr13 35423851 35423929 -66449240 - AluJo SINE Alu -21 291 216 * 606 135 0 39 chr13 35423922 35424026 -66449143 - AluJo SINE Alu -128 184 85 524 296 6 6 chr13 35424030 35424202 -66448967 + HAL1 LINE L1 144 315 -2192 676 270 135 0 chr13 35424212 35424464 -66448705 + HAL1 LINE L1 682 967 -1540 252 336 123 62 chr13 35424623 35424769 -66448400 + MIR SINE MIR 19 173 -89 555 269 166 9 chr13 35425845 35426068 -66447101 + MIR SINE MIR 5 262 0 1465 296 82 15 chr13 35426280 35427241 -66445928 + L2 LINE L2 2294 3313 0 2197 117 3 0 chr13 35427329 35427627 -66445542 + AluSx SINE Alu 1 299 -13 187 314 111 53 chr13 35427953 35428160 -66445009 - L2 LINE L2 -219 3053 2835 723 172 98 23 chr13 35428671 35428845 -66444324 + MER21A LTR ERV1 78 264 -667 3090 136 53 20 chr13 35428879 35429050 -66444119 + MER21A LTR ERV1 403 567 -364 2030 128 10 0 chr13 35429050 35429346 -66443823 - AluSx SINE Alu -11 301 3 3090 136 53 20 chr13 35429346 35429680 -66443489 + MER21A LTR ERV1 567 925 -6 313 215 62 0 chr13 35429795 35429860 -66443309 - MER96 DNA MER1_type? 0 175 107 265 265 60 0 chr13 35430023 35430106 -66443063 - MIR SINE MIR -56 206 119 23 0 0 0 chr13 35430643 35430666 -66442503 + AT_rich Low_complexity Low_complexity 1 23 0 1660 93 0 0 chr13 35431165 35431381 -66441788 + AluY SINE Alu 83 298 -13 1589 147 0 12 chr13 35432291 35432536 -66440633 + MLT1A1 LTR MaLR 116 357 -8 205 314 66 58 chr13 35433392 35433529 -66439640 - MER5B DNA MER1_type -17 161 24 208 254 0 0 chr13 35433577 35433632 -66439537 + (TA)n Simple_repeat Simple_repeat 2 56 0 618 332 137 4 chr13 35434253 35434479 -66438690 - MIR SINE MIR 0 262 7 355 277 53 0 chr13 35434660 35434754 -66438415 + MIR SINE MIR 149 247 -15 607 277 134 26 chr13 35434772 35435003 -66438166 - MIR SINE MIR -2 260 5 239 359 15 103 chr13 35435002 35435264 -66437905 - L2 LINE L2 -109 3163 2925 * 393 250 50 0 chr13 35435277 35435377 -66437792 + MIR SINE MIR 128 232 -30 204 273 0 0 chr13 35435527 35435571 -66437598 + L2 LINE L2 3262 3305 -8 1435 257 48 60 chr13 35435676 35436174 -66436995 + MLT1F LTR MaLR 1 492 -50 2278 102 0 3 chr13 35436930 35437223 -66435946 - AluSx SINE Alu -20 292 1 366 358 48 52 chr13 35437223 35437491 -66435678 + L2 LINE L2 2198 2464 -850 847 173 96 5 chr13 35437523 35437731 -66435438 - L1MDb LINE L1 -3998 2589 2363 * 3381 192 50 28 chr13 35437727 35438867 -66434302 + L1MD1 LINE L1 4856 6020 -222 396 312 40 7 chr13 35438937 35439114 -66434055 - L1MDb LINE L1 -5753 656 410 705 186 0 29 chr13 35439274 35439414 -66433755 - FLAM_C SINE Alu -7 136 1 21 0 0 0 chr13 35439447 35439468 -66433701 + AT_rich Low_complexity Low_complexity 1 21 0 842 146 0 0 chr13 35439555 35439678 -66433491 + FLAM_C SINE Alu 1 123 -10 23 33 0 0 chr13 35440248 35440278 -66432891 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr13 35440784 35440808 -66432361 + AT_rich Low_complexity Low_complexity 1 24 0 1166 238 104 3 chr13 35441372 35441671 -66431498 + L2 LINE L2 2970 3298 -15 30 0 0 0 chr13 35442632 35442662 -66430507 + AT_rich Low_complexity Low_complexity 1 30 0 521 179 86 34 chr13 35442674 35442791 -66430378 - FRAM SINE Alu -46 130 8 2114 113 3 0 chr13 35442801 35443121 -66430048 - AluSx SINE Alu 0 321 1 365 271 34 73 chr13 35443648 35443825 -66429344 - L1M4 LINE L1 -1645 4501 4332 27 62 0 0 chr13 35443879 35443927 -66429242 + AT_rich Low_complexity Low_complexity 1 48 0 1372 132 20 0 chr13 35444113 35444310 -66428859 - 7SLRNA srpRNA srpRNA -119 201 1 474 202 0 0 chr13 35445056 35445140 -66428029 + MSTB LTR MaLR 1 84 -342 227 269 0 0 chr13 35445141 35445193 -66427976 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445194 35445246 -66427923 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445247 35445299 -66427870 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445300 35445352 -66427817 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445353 35445405 -66427764 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445406 35445458 -66427711 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445459 35445511 -66427658 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445512 35445564 -66427605 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445565 35445617 -66427552 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445618 35445670 -66427499 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445671 35445723 -66427446 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445724 35445776 -66427393 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445777 35445829 -66427340 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445830 35445882 -66427287 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445883 35445935 -66427234 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445936 35445988 -66427181 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445989 35446041 -66427128 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446042 35446094 -66427075 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446095 35446147 -66427022 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446148 35446200 -66426969 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446201 35446253 -66426916 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446254 35446306 -66426863 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446307 35446359 -66426810 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446360 35446412 -66426757 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446413 35446465 -66426704 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446466 35446518 -66426651 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446519 35446571 -66426598 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446572 35446624 -66426545 + MSTB LTR MaLR 33 84 -342 2286 177 8 13 chr13 35446625 35447021 -66426148 + MSTB LTR MaLR 33 426 0 309 302 30 23 chr13 35447822 35447942 -66425227 + MIR SINE MIR 43 154 -66 259 306 122 10 chr13 35447987 35448085 -66425084 - MIR3 SINE MIR -13 195 87 603 185 8 8 chr13 35448090 35448209 -66424960 - FLAM_A SINE Alu -10 132 14 745 216 45 6 chr13 35448330 35448506 -66424663 + MER105 DNA DNA 2 184 -20 2156 131 3 3 chr13 35448710 35449022 -66424147 - AluSx SINE Alu 0 312 1 863 226 0 11 chr13 35449852 35450029 -66423140 - FAM SINE Alu 0 175 1 680 80 0 0 chr13 35450430 35450530 -66422639 + AluSg/x SINE Alu 213 312 0 186 43 0 0 chr13 35450640 35450663 -66422506 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1493 197 42 0 chr13 35450670 35450934 -66422235 - AluJb SINE Alu -37 275 1 1117 216 14 0 chr13 35450976 35451194 -66421975 - AluJb SINE Alu -8 304 84 30945 108 20 56 chr13 35451274 35457640 -66415529 - L1PA7 LINE L1 -12 6142 10 1968 126 33 3 chr13 35458199 35458500 -66414669 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr13 35458590 35458612 -66414557 + AT_rich Low_complexity Low_complexity 1 22 0 2023 122 17 0 chr13 35459415 35459709 -66413460 - AluSx SINE Alu -13 299 1 33 73 0 0 chr13 35462699 35462767 -66410402 + AT_rich Low_complexity Low_complexity 1 68 0 1688 161 37 3 chr13 35463305 35463603 -66409566 - MER7A DNA MER2_type -40 306 1 2457 79 0 0 chr13 35463894 35464198 -66408971 + AluSc SINE Alu 1 304 -5 649 167 0 0 chr13 35464518 35464632 -66408537 + FRAM SINE Alu 63 176 0 25 65 0 0 chr13 35465467 35465513 -66407656 + AT_rich Low_complexity Low_complexity 1 46 0 238 339 62 8 chr13 35466723 35466853 -66406316 - MIR3 SINE MIR -21 187 51 189 0 0 0 chr13 35466853 35466874 -66406295 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 701 183 9 0 chr13 35466880 35466995 -66406174 - FLAM_A SINE Alu -17 116 1 1846 231 55 18 chr13 35467464 35467632 -66405537 + L1MC4a LINE L1 5508 5668 -2140 267 103 0 0 chr13 35467632 35467671 -66405498 + (CA)n Simple_repeat Simple_repeat 2 40 0 1846 231 55 18 chr13 35467671 35468083 -66405086 + L1MC4a LINE L1 5668 6156 -1652 638 213 69 6 chr13 35468085 35468245 -66404924 - MER58B DNA MER1_type -2 339 170 187 125 175 0 chr13 35468339 35468379 -66404790 + L2 LINE L2 3263 3309 -4 260 347 40 17 chr13 35468632 35468805 -66404364 - HAL1 LINE L1 -720 1787 1611 437 285 102 12 chr13 35468826 35468946 -66404223 - HAL1 LINE L1 -983 1524 1416 2052 123 7 3 chr13 35468946 35469239 -66403930 + AluSg SINE Alu 2 295 -15 437 285 102 12 chr13 35469239 35469374 -66403795 - HAL1 LINE L1 -1091 1416 1246 961 167 0 0 chr13 35469749 35469899 -66403270 - AluJb SINE Alu -11 301 152 922 151 84 39 chr13 35469971 35470150 -66403019 + MER5A DNA MER1_type 3 189 0 1716 156 20 17 chr13 35471094 35471396 -66401773 + AluJo SINE Alu 1 303 -9 323 187 220 11 chr13 35473008 35473099 -66400070 - MIR SINE MIR -70 192 83 343 232 53 21 chr13 35473103 35473198 -66399971 + MIR SINE MIR 95 192 -70 623 273 164 5 chr13 35473344 35473564 -66399605 + MIR SINE MIR 8 262 0 211 286 229 14 chr13 35475099 35475169 -66398000 + MIR SINE MIR 23 107 -155 28 0 0 0 chr13 35475207 35475235 -66397934 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 35475532 35475556 -66397613 + AT_rich Low_complexity Low_complexity 1 24 0 6929 64 4 0 chr13 35476118 35477799 -66395370 - L1PA7 LINE L1 0 6154 4468 13077 79 21 29 chr13 35477799 35479817 -66393352 - L1P3 LINE L1 -4417 2044 4 4318 224 25 23 chr13 35480195 35481322 -66391847 + L1MEc LINE L1 44 1172 -5224 2242 119 0 0 chr13 35481356 35481658 -66391511 + AluSx SINE Alu 1 302 -10 3057 218 42 46 chr13 35481667 35481847 -66391322 + L1MEc LINE L1 1541 1720 -4495 2315 92 0 7 chr13 35481847 35482151 -66391018 + AluSg SINE Alu 1 302 -8 3057 218 42 46 chr13 35482151 35482175 -66390994 + L1MEc LINE L1 1720 1743 -4472 649 188 8 0 chr13 35482175 35482292 -66390877 - FLAM_C SINE Alu -15 118 1 3057 218 42 46 chr13 35482292 35483123 -66390046 + L1MEc LINE L1 1743 2531 -3684 1549 188 31 3 chr13 35483598 35483886 -66389283 - AluJo SINE Alu -16 296 1 413 200 227 22 chr13 35484030 35484215 -66388954 + MLT1H1 LTR MaLR 326 548 -7 628 306 110 47 chr13 35484218 35484547 -66388622 + L2 LINE L2 1644 2022 -1292 2066 124 3 10 chr13 35484547 35484879 -66388290 - AluSx SINE Alu 0 312 3 628 306 110 47 chr13 35484879 35485085 -66388084 + L2 LINE L2 2022 2213 -1101 632 250 159 9 chr13 35485086 35485306 -66387863 + MIR SINE MIR 2 254 -8 536 271 76 34 chr13 35485324 35485560 -66387609 + L2 LINE L2 2244 2489 -825 705 136 37 37 chr13 35485875 35486037 -66387132 - Charlie1 DNA MER1_type 0 2761 2600 1274 162 16 76 chr13 35486038 35486353 -66386816 - L1MB8 LINE L1 -28 6150 5855 4282 173 75 22 chr13 35486441 35487388 -66385781 - Charlie1 DNA MER1_type -153 2608 1612 966 185 23 6 chr13 35487387 35487560 -66385609 + Tigger3(Golem) DNA MER2_type 2861 3036 0 * 21 36 0 0 chr13 35487588 35487616 -66385553 + AT_rich Low_complexity Low_complexity 1 28 0 982 160 16 41 chr13 35487636 35487830 -66385339 - AluJo SINE Alu -123 189 1 1481 246 84 21 chr13 35487872 35488302 -66384867 - L1ME LINE L1 -5417 653 197 290 293 93 21 chr13 35488474 35488614 -66384555 - L2 LINE L2 -564 2750 2601 205 300 17 0 chr13 35488837 35488897 -66384272 - L3b LINE CR1 -130 1453 1393 504 189 27 9 chr13 35489190 35489301 -66383868 + L1ME3A LINE L1 6044 6156 -14 190 291 105 23 chr13 35489757 35489843 -66383326 + L2 LINE L2 3220 3312 -1 6808 48 22 17 chr13 35490718 35492052 -66381117 + L1PA5 LINE L1 4810 6148 -6 23 97 0 0 chr13 35493598 35493670 -66379499 + AT_rich Low_complexity Low_complexity 1 72 0 2193 112 0 0 chr13 35493772 35494076 -66379093 - AluSc SINE Alu -5 304 1 716 191 0 8 chr13 35494222 35494353 -66378816 - FLAM_C SINE Alu -2 131 2 187 211 88 53 chr13 35494577 35494634 -66378535 - MIR SINE MIR -30 232 174 6438 137 58 21 chr13 35494859 35496045 -66377124 + Tigger3b DNA MER2_type 2 1231 0 351 288 102 8 chr13 35496199 35496317 -66376852 - MIR SINE MIR -127 135 7 2198 107 7 0 chr13 35497236 35497535 -66375634 - AluSx SINE Alu -9 303 3 200 132 26 0 chr13 35497719 35497757 -66375412 + (TTATA)n Simple_repeat Simple_repeat 5 43 0 1739 174 3 3 chr13 35497877 35498165 -66375004 + AluSq SINE Alu 1 288 -25 30 27 0 0 chr13 35498165 35498202 -66374967 + AT_rich Low_complexity Low_complexity 1 37 0 2444 117 0 3 chr13 35498567 35498917 -66374252 + L1PA16 LINE L1 5682 6030 -136 400 246 65 87 chr13 35499685 35500061 -66373108 + L1MEc LINE L1 1440 1743 -833 249 327 79 52 chr13 35501047 35501077 -66372092 + L2 LINE L2 1790 1818 -1496 2149 90 33 0 chr13 35501077 35501376 -66371793 - AluSx SINE Alu -3 309 1 249 327 79 52 chr13 35501376 35501634 -66371535 + L2 LINE L2 1818 2097 -1217 1957 150 36 27 chr13 35501634 35501968 -66371201 - MER1B DNA MER1_type 0 337 1 249 327 79 52 chr13 35501968 35502121 -66371048 + L2 LINE L2 2097 2244 -1070 272 188 0 0 chr13 35502388 35502436 -66370733 - MER5B DNA MER1_type -130 48 1 4521 171 49 1 chr13 35502727 35503516 -66369653 + MER21B LTR ERV1 1 827 -36 192 330 136 19 chr13 35503547 35503650 -66369519 + L2 LINE L2 2918 3032 -240 1016 318 87 43 chr13 35503731 35504560 -66368609 - L2 LINE L2 0 3313 2452 2311 85 0 0 chr13 35504738 35505031 -66368138 - AluSq SINE Alu -20 293 1 21 0 0 0 chr13 35505113 35505134 -66368035 + AT_rich Low_complexity Low_complexity 1 21 0 2370 86 3 0 chr13 35506617 35506920 -66366249 - AluSq SINE Alu -9 304 1 387 208 14 0 chr13 35507968 35508040 -66365129 + L2 LINE L2 3241 3313 0 406 186 0 43 chr13 35508918 35508988 -66364181 - Tigger2 DNA MER2_type -3 2715 2649 965 173 6 0 chr13 35508988 35509150 -66364019 - FAM SINE Alu -3 46 1 702 144 70 53 chr13 35509159 35509346 -66363823 - Tigger2 DNA MER2_type -78 2640 2451 1336 142 29 8 chr13 35509407 35509647 -66363522 - Tigger2 DNA MER2_type -2473 245 1 276 229 72 24 chr13 35509926 35510009 -66363160 + MIR3 SINE MIR 111 197 -11 1852 162 0 19 chr13 35510173 35510487 -66362682 - AluJo SINE Alu -4 308 1 27 49 0 0 chr13 35511380 35511421 -66361748 + AT_rich Low_complexity Low_complexity 1 41 0 2282 89 0 16 chr13 35511509 35511813 -66361356 + AluSg SINE Alu 1 299 -11 1634 195 96 54 chr13 35511845 35512405 -66360764 + L1MC5 LINE L1 7328 7911 -50 320 388 6 12 chr13 35513436 35513596 -66359573 + L2 LINE L2 3149 3307 -6 76 100 0 0 chr13 35514125 35514376 -66358793 + AT_rich Low_complexity Low_complexity 1 251 0 560 134 42 113 chr13 35515600 35515742 -66357427 + LTR8A LTR ERV1 596 727 0 395 342 32 26 chr13 35515785 35515940 -66357229 + L2 LINE L2 3117 3272 0 392 295 22 7 chr13 35516092 35516231 -66356938 - MER117 DNA MER1_type -53 144 4 2420 271 105 20 chr13 35516400 35517538 -66355631 + HAL1b LINE L1 4 1237 -111 16030 142 26 12 chr13 35517543 35520755 -66352414 - L1MA1 LINE L1 0 7721 4422 6342 167 0 6 chr13 35520755 35521780 -66351389 + L1PA14 LINE L1 4008 5037 -1124 2174 116 3 0 chr13 35521780 35522073 -66351096 + AluSx SINE Alu 1 294 -18 6342 167 0 6 chr13 35522073 35523158 -66350011 + L1PA14 LINE L1 5037 6144 -17 16030 142 26 12 chr13 35523158 35524351 -66348818 - L1MA1 LINE L1 -3299 4422 3248 306 187 122 93 chr13 35524359 35524466 -66348703 + HAL1b LINE L1 1232 1341 -7 22 0 0 0 chr13 35525134 35525156 -66348013 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 35526017 35526045 -66347124 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 35527083 35527111 -66346058 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr13 35527334 35527374 -66345795 + (CA)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr13 35527626 35527646 -66345523 + (A)n Simple_repeat Simple_repeat 1 20 0 679 200 84 5 chr13 35528911 35529101 -66344068 - L1MC4 LINE L1 -1379 6663 6459 213 273 0 15 chr13 35531529 35531595 -66341574 + (TTCA)n Simple_repeat Simple_repeat 3 67 0 307 308 57 57 chr13 35531596 35531755 -66341414 + MIR SINE MIR 104 262 0 2791 207 44 19 chr13 35532120 35532824 -66340345 + L1ME1 LINE L1 5440 6161 -5 28 0 0 0 chr13 35532906 35532934 -66340235 + AT_rich Low_complexity Low_complexity 1 28 0 1573 216 67 22 chr13 35533388 35533836 -66339333 - L1M4 LINE L1 -935 5211 4744 27130 68 4 0 chr13 35533934 35537639 -66335530 + L1P LINE L1 13 3732 -2414 401 192 0 0 chr13 35538303 35538376 -66334793 + L1MA2 LINE L1 6232 6304 0 360 281 57 12 chr13 35538383 35538629 -66334540 + L1ME4a LINE L1 5677 5933 -188 243 282 86 17 chr13 35538635 35538752 -66334417 + L1ME4a LINE L1 5964 6088 -33 2519 133 32 48 chr13 35539288 35539392 -66333777 - L1MA9 LINE L1 0 6376 6272 1878 154 27 15 chr13 35539392 35539723 -66333446 + MER44D DNA MER2_type 5 609 0 2519 133 32 48 chr13 35539723 35539891 -66333278 - L1MA9 LINE L1 -104 6272 6103 1496 178 9 54 chr13 35539891 35540206 -66332963 - AluJo SINE Alu -11 301 1 2519 133 32 48 chr13 35540206 35540468 -66332701 - L1MA9 LINE L1 -273 6103 5850 280 196 0 0 chr13 35540469 35540515 -66332654 + Tigger5 DNA MER2_type 1 46 -2277 312 238 12 0 chr13 35540532 35540612 -66332557 + Tigger5 DNA MER2_type 2243 2323 0 1816 143 13 3 chr13 35540612 35540926 -66332243 - L1MA9 LINE L1 -529 5847 5531 1245 166 105 0 chr13 35540936 35541183 -66331986 - MSTC LTR MaLR -155 273 1 5914 193 48 7 chr13 35541184 35542599 -66330570 - L1MA9 LINE L1 -1974 4236 2764 328 185 148 0 chr13 35542611 35542692 -66330477 - L1MA9 LINE L1 -6045 96 4 21 57 0 0 chr13 35543322 35543357 -66329812 + AT_rich Low_complexity Low_complexity 1 35 0 184 215 31 46 chr13 35545996 35546061 -66327108 - L2 LINE L2 -1886 1428 1365 185 0 40 0 chr13 35546113 35546138 -66327031 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 675 304 80 28 chr13 35546264 35546550 -66326619 - L2 LINE L2 0 3313 3013 576 293 61 20 chr13 35546589 35546886 -66326283 + L1MC4a LINE L1 5592 5900 -1908 2237 100 9 3 chr13 35547174 35547503 -66325666 + L1PA13 LINE L1 5819 6149 -14 325 270 0 35 chr13 35547511 35547626 -66325543 + L1ME1 LINE L1 5784 5894 -272 4112 131 25 37 chr13 35547652 35548428 -66324741 + L1MA4 LINE L1 5534 6299 -1 4096 229 26 7 chr13 35548976 35550157 -66323012 + L1M4 LINE L1 3158 4361 -1785 1208 149 5 9 chr13 35550139 35550361 -66322808 + L1MA9 LINE L1 5721 5941 -371 * 1221 143 25 31 chr13 35550373 35550603 -66322566 + L1P5 LINE L1 5104 5340 -814 2187 116 0 0 chr13 35550603 35550905 -66322264 - AluSq SINE Alu -11 302 1 1221 143 25 31 chr13 35550905 35551055 -66322114 + L1P5 LINE L1 5340 5489 -665 23 33 0 0 chr13 35551073 35551103 -66322066 + GC_rich Low_complexity Low_complexity 1 30 0 384 175 68 0 chr13 35551126 35551226 -66321943 + L1MA9 LINE L1 5838 5943 -354 2197 97 3 0 chr13 35551627 35551927 -66321242 - AluSg SINE Alu -9 301 1 444 67 0 0 chr13 35555664 35555724 -66317445 + (TG)n Simple_repeat Simple_repeat 1 60 0 2065 95 13 0 chr13 35556420 35556726 -66316443 + L1P5 LINE L1 5478 5787 -367 3667 175 26 18 chr13 35556727 35557499 -66315670 + L1P LINE L1 3958 4735 -1411 373 263 22 15 chr13 35557504 35557641 -66315528 + L1MA9 LINE L1 6003 6140 -172 2125 86 0 4 chr13 35557657 35557926 -66315243 - AluSq SINE Alu -45 268 1 2878 207 51 53 chr13 35557949 35558396 -66314773 + L1ME4a LINE L1 4316 4762 -1384 2527 51 3 6 chr13 35558396 35558708 -66314461 + AluY SINE Alu 1 311 0 2878 207 51 53 chr13 35558708 35559207 -66313962 + L1ME4a LINE L1 4762 5260 -886 353 280 0 19 chr13 35559658 35559765 -66313404 + L1M4 LINE L1 3038 3142 -3004 402 283 51 29 chr13 35559921 35560197 -66312972 + L1MCc LINE L1 17 298 -6125 579 263 83 35 chr13 35560221 35560451 -66312718 + L1MCc LINE L1 3041 3294 -3647 2370 71 14 0 chr13 35560451 35560748 -66312421 + AluSg SINE Alu 1 301 -9 579 263 83 35 chr13 35560748 35560856 -66312313 + L1MCc LINE L1 3294 3395 -3546 1592 114 43 8 chr13 35560863 35561117 -66312052 + Tigger3(Golem) DNA MER2_type 2767 3029 0 349 309 43 15 chr13 35561242 35561411 -66311758 - MIR SINE MIR -69 139 2 21 0 0 0 chr13 35561580 35561601 -66311568 + AT_rich Low_complexity Low_complexity 1 21 0 437 333 119 0 chr13 35561889 35562066 -66311103 - MIR SINE MIR -49 213 16 483 226 71 131 chr13 35563151 35563562 -66309607 + L1ME4a LINE L1 5521 5906 -215 298 146 18 0 chr13 35563629 35563684 -66309485 + MIR SINE MIR 87 142 -120 2171 111 10 0 chr13 35563778 35564076 -66309093 - AluSx SINE Alu -11 301 1 1098 156 0 0 chr13 35564079 35564246 -66308923 - AluJb SINE Alu -11 301 135 2043 89 19 57 chr13 35564561 35564875 -66308294 - AluSx SINE Alu -10 302 1 354 232 72 40 chr13 35564887 35565012 -66308157 + L1ME4a LINE L1 5993 6121 0 399 288 72 40 chr13 35565743 35565993 -66307176 - MIR SINE MIR -3 259 2 1738 172 13 7 chr13 35566020 35566323 -66306846 - AluJo SINE Alu -7 305 1 765 168 0 8 chr13 35566326 35566457 -66306712 - FLAM_A SINE Alu -3 130 1 24 0 0 0 chr13 35567131 35567155 -66306014 + AT_rich Low_complexity Low_complexity 1 24 0 242 113 0 38 chr13 35568452 35568505 -66304664 + (CGG)n Simple_repeat Simple_repeat 2 52 0 181 243 27 0 chr13 35569375 35569412 -66303757 - L2 LINE L2 -24 3248 3211 * 310 235 60 179 chr13 35569379 35569477 -66303692 - MIR SINE MIR -23 239 184 1057 78 0 0 chr13 35569477 35569619 -66303550 - L1PA8 LINE L1 0 6172 6031 310 235 60 179 chr13 35569619 35569754 -66303415 - MIR SINE MIR -78 184 34 251 323 0 0 chr13 35570312 35570405 -66302764 + MLT1L LTR MaLR 162 254 -361 25 31 0 0 chr13 35570437 35570469 -66302700 + AT_rich Low_complexity Low_complexity 1 32 0 499 286 47 6 chr13 35621282 35621453 -66251716 - MIR SINE MIR -42 220 43 2207 106 0 0 chr13 35621682 35621986 -66251183 + AluSx SINE Alu 1 304 0 740 316 208 10 chr13 35623258 35623811 -66249358 - L2 LINE L2 0 3272 2613 419 337 3 3 chr13 35624919 35625216 -66247953 - AluSp SINE Alu -12 301 5 1633 135 15 8 chr13 35625546 35625805 -66247364 - AluSx SINE Alu -51 261 1 617 160 88 0 chr13 35625850 35625975 -66247194 + L1MC1 LINE L1 5483 5618 -726 1074 176 19 147 chr13 35625975 35626312 -66246857 - MLT1A1 LTR MaLR 0 365 89 725 240 0 0 chr13 35626312 35626441 -66246728 + FLAM_A SINE Alu 2 130 -3 1074 176 19 147 chr13 35626441 35626519 -66246650 - MLT1A1 LTR MaLR -276 89 3 2833 129 42 40 chr13 35626522 35626885 -66246284 + L1MC1 LINE L1 5615 5976 -357 1576 228 0 10 chr13 35626885 35627192 -66245977 + AluJo SINE Alu 1 304 -8 2268 119 0 0 chr13 35627200 35627503 -66245666 + AluSg SINE Alu 1 303 -7 2833 129 42 40 chr13 35627503 35627702 -66245467 + L1MC1 LINE L1 5982 6187 -146 1283 176 61 23 chr13 35627703 35628000 -66245169 + LTR54 LTR ERV1 1 254 -149 2234 129 0 0 chr13 35628000 35628309 -66244860 - AluSg1 SINE Alu 0 309 1 1283 176 61 23 chr13 35628309 35628461 -66244708 + LTR54 LTR ERV1 254 399 -4 705 214 7 7 chr13 35628461 35628606 -66244563 + L1MC1 LINE L1 6181 6325 -8 2266 82 31 0 chr13 35628606 35628898 -66244271 + AluSc SINE Alu 1 301 -8 292 372 67 9 chr13 35629134 35629357 -66243812 - L2 LINE L2 -1043 2271 2036 2039 159 0 0 chr13 35629390 35629686 -66243483 + AluSx SINE Alu 1 296 -16 2841 171 34 60 chr13 35629691 35630137 -66243032 + L1MB3 LINE L1 5423 5848 -335 1854 159 13 7 chr13 35630137 35630439 -66242730 + AluJb SINE Alu 1 304 -8 2841 171 34 60 chr13 35630439 35630663 -66242506 + L1MB3 LINE L1 5848 6076 -107 358 182 13 0 chr13 35630750 35630827 -66242342 + L1MB4 LINE L1 6102 6179 -1 494 159 34 35 chr13 35630827 35630952 -66242217 + L1ME3 LINE L1 5850 5986 -176 3158 142 99 14 chr13 35631444 35632002 -66241167 + MER6A DNA MER2_type 1 605 0 1077 263 45 53 chr13 35632138 35632738 -66240431 - L1MC5 LINE L1 -30 7931 7337 462 248 40 0 chr13 35632898 35633047 -66240122 - L1ME4a LINE L1 -5 6116 5962 291 298 167 0 chr13 35633211 35633325 -66239844 - MIR SINE MIR -18 244 112 308 364 23 34 chr13 35633791 35633967 -66239202 - MIR3 SINE MIR -3 205 32 679 236 68 19 chr13 35635039 35635200 -66237969 + AluJo SINE Alu 1 169 -143 414 0 0 0 chr13 35635393 35635439 -66237730 + (TC)n Simple_repeat Simple_repeat 2 47 0 297 0 0 0 chr13 35635438 35635471 -66237698 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 951 154 0 0 chr13 35635488 35635650 -66237519 - L1MB3 LINE L1 -171 6012 5851 211 296 0 0 chr13 35635657 35635728 -66237441 + (TG)n Simple_repeat Simple_repeat 2 72 0 276 222 0 0 chr13 35635738 35635801 -66237368 - L1MC5 LINE L1 -90 7871 7809 26 30 0 0 chr13 35635918 35635951 -66237218 + AT_rich Low_complexity Low_complexity 1 33 0 854 127 30 22 chr13 35635955 35636089 -66237080 - AluJb SINE Alu -177 135 1 28 0 0 0 chr13 35636091 35636119 -66237050 + AT_rich Low_complexity Low_complexity 1 28 0 2053 128 16 57 chr13 35636119 35636174 -66236995 - L1MB2 LINE L1 0 6171 6115 270 0 0 0 chr13 35636174 35636204 -66236965 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2125 108 0 4 chr13 35636204 35636483 -66236686 - AluSc SINE Alu -31 278 1 2053 128 16 57 chr13 35636483 35636849 -66236320 - L1MB2 LINE L1 -54 6117 5766 238 261 23 11 chr13 35636873 35636961 -66236208 - L1M4 LINE L1 -1564 4582 4494 974 93 93 0 chr13 35636968 35637118 -66236051 - MER5A DNA MER1_type -25 164 1 1971 188 84 16 chr13 35638042 35638532 -66234637 + Charlie1b DNA MER1_type 1 523 0 3551 135 70 38 chr13 35638783 35638867 -66234302 + MER11A LTR ERVK 143 223 -1043 2591 58 0 6 chr13 35638867 35639179 -66233990 - AluY SINE Alu -1 310 1 3551 135 70 38 chr13 35639179 35640057 -66233112 + MER11A LTR ERVK 223 1266 0 33805 92 9 27 chr13 35640057 35646195 -66226974 - L1PA6 LINE L1 -66 6088 64 452 328 90 0 chr13 35646216 35646539 -66226630 + L1MC4a LINE L1 5574 5925 -1883 210 143 29 0 chr13 35646552 35646587 -66226582 + (TG)n Simple_repeat Simple_repeat 2 37 0 257 257 14 14 chr13 35646935 35647005 -66226164 - MLT1L LTR MaLR -414 201 132 929 241 95 59 chr13 35647150 35647477 -66225692 - LTR33 LTR ERVL -8 513 163 2303 111 0 0 chr13 35647477 35647784 -66225385 + AluSg SINE Alu 2 308 -2 929 241 95 59 chr13 35647784 35647917 -66225252 - LTR33 LTR ERVL -358 163 36 1902 135 15 4 chr13 35648002 35648276 -66224893 - AluSx SINE Alu -7 305 29 209 94 19 75 chr13 35648614 35648667 -66224502 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 2077 117 17 13 chr13 35649516 35649816 -66223353 - AluSx SINE Alu -11 301 1 183 42 0 0 chr13 35650756 35650780 -66222389 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 605 142 0 25 chr13 35651564 35651684 -66221485 - MLT1D LTR MaLR 0 505 389 912 216 80 50 chr13 35651763 35651933 -66221236 - MLT1D LTR MaLR -133 372 209 237 33 0 0 chr13 35651933 35651963 -66221206 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 285 29 0 0 chr13 35651962 35651996 -66221173 + (GA)n Simple_repeat Simple_repeat 1 34 0 912 216 80 50 chr13 35651963 35652186 -66220983 - MLT1D LTR MaLR -296 209 1 188 250 181 28 chr13 35652274 35652346 -66220823 - L2 LINE L2 -12 3301 3219 1759 163 3 16 chr13 35652779 35653086 -66220083 - AluJb SINE Alu -9 303 1 609 254 90 37 chr13 35653623 35653833 -66219336 - MIR SINE MIR -13 249 23 2208 127 0 0 chr13 35653916 35654208 -66218961 + AluSg SINE Alu 1 292 -18 2882 94 0 0 chr13 35654312 35654685 -66218484 - THE1C LTR MaLR 0 375 3 8339 96 44 132 chr13 35654687 35656419 -66216750 - THE1C-int LTR MaLR 0 1580 1 2397 113 21 32 chr13 35656419 35656461 -66216708 - THE1C LTR MaLR 0 375 334 2087 142 7 0 chr13 35656461 35656764 -66216405 + AluSx SINE Alu 1 305 -7 2397 113 21 32 chr13 35656764 35657100 -66216069 - THE1C LTR MaLR -41 334 1 1333 256 139 19 chr13 35657104 35657616 -66215553 - MLT1G1 LTR MaLR -22 573 1 1892 144 23 121 chr13 35658161 35658456 -66214713 + L1MA6 LINE L1 5592 5816 -484 1593 159 87 14 chr13 35658456 35658775 -66214394 + AluJo SINE Alu 1 312 0 1892 144 23 121 chr13 35658775 35659000 -66214169 + L1MA6 LINE L1 5816 6061 -239 867 156 58 82 chr13 35659004 35659261 -66213908 + L1MB8 LINE L1 5928 6178 0 552 138 138 0 chr13 35659726 35659856 -66213313 + L1MC1 LINE L1 6180 6327 -6 874 200 12 86 chr13 35660080 35660335 -66212834 + MER106A DNA MER1_type 1 236 0 388 243 81 58 chr13 35660443 35660616 -66212553 + HAL1 LINE L1 833 1009 -1498 2343 99 0 0 chr13 35660679 35660982 -66212187 + AluSx SINE Alu 1 303 -9 2130 133 3 3 chr13 35660984 35661286 -66211883 + AluSx SINE Alu 1 302 -10 316 298 54 32 chr13 35661300 35661469 -66211700 + L1MEd LINE L1 918 1114 -5053 189 189 27 0 chr13 35661622 35661659 -66211510 + MIR SINE MIR 149 186 -76 1002 185 82 26 chr13 35662151 35662383 -66210786 - MIR SINE MIR -1 261 17 310 331 100 25 chr13 35662961 35663281 -66209888 + L1M4 LINE L1 4996 5339 -807 2010 100 11 0 chr13 35663356 35663626 -66209543 - AluSq SINE Alu -30 283 11 7687 124 22 19 chr13 35663648 35664933 -66208236 + HSMAR2 DNA Mariner 9 1297 -5 414 0 0 0 chr13 35664933 35664979 -66208190 + (TG)n Simple_repeat Simple_repeat 2 47 0 2073 115 53 31 chr13 35665424 35666143 -66207026 + Ricksha DNA DNA 2452 3247 -7 724 175 0 44 chr13 35666398 35666535 -66206634 + FLAM_C SINE Alu 1 131 -12 35 33 0 17 chr13 35666536 35666569 -66206600 + AT_rich Low_complexity Low_complexity 1 34 -25 2346 89 7 0 chr13 35666569 35666862 -66206307 + AluSg SINE Alu 1 295 -15 35 33 0 17 chr13 35666862 35666888 -66206281 + AT_rich Low_complexity Low_complexity 34 59 0 877 220 35 20 chr13 35667418 35667618 -66205551 - L2 LINE L2 -5 3308 3106 2306 249 76 18 chr13 35668081 35668844 -66204325 - L2 LINE L2 -219 3094 2291 1096 212 45 101 chr13 35669124 35669260 -66203909 + L1ME2 LINE L1 5662 5804 -360 1795 159 0 25 chr13 35669260 35669574 -66203595 + AluJb SINE Alu 1 306 -6 1096 212 45 101 chr13 35669574 35669952 -66203217 + L1ME2 LINE L1 5804 6147 -17 21 0 0 0 chr13 35670212 35670233 -66202936 + AT_rich Low_complexity Low_complexity 1 21 0 361 219 151 34 chr13 35670832 35670978 -66202191 - MER20B DNA MER1_type -620 163 1 194 289 0 0 chr13 35671546 35671591 -66201578 - L2 LINE L2 -239 3033 2989 234 273 65 26 chr13 35671918 35671995 -66201174 - L2 LINE L2 0 3272 3193 24 0 0 0 chr13 35672024 35672048 -66201121 + AT_rich Low_complexity Low_complexity 1 24 0 283 298 119 62 chr13 35672114 35672513 -66200656 - L2 LINE L2 -219 3053 2624 1897 159 61 6 chr13 35674169 35674515 -66198654 + MLT1A1 LTR MaLR 1 365 0 309 299 24 47 chr13 35675344 35675471 -66197698 + L2 LINE L2 3172 3295 -18 21 57 0 0 chr13 35676911 35676946 -66196223 + AT_rich Low_complexity Low_complexity 1 35 0 357 241 28 19 chr13 35677142 35677250 -66195919 + L1ME1 LINE L1 6035 6143 -23 1076 119 110 32 chr13 35677308 35677498 -66195671 + L1PA16 LINE L1 5804 6015 -151 186 43 0 0 chr13 35677498 35677521 -66195648 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 1076 119 110 32 chr13 35677521 35677549 -66195620 + L1PA16 LINE L1 6015 6039 -127 4769 68 5 2 chr13 35677549 35678191 -66194978 + L1PA7 LINE L1 5521 6164 0 964 65 14 7 chr13 35678191 35678329 -66194840 + L1PA16 LINE L1 6028 6166 0 230 275 0 0 chr13 35679252 35679321 -66193848 + AluSq SINE Alu 145 213 -90 609 160 9 0 chr13 35679523 35679629 -66193540 - FLAM_C SINE Alu -36 107 1 266 179 0 30 chr13 35679629 35679696 -66193473 + MER58A DNA MER1_type 48 112 0 603 161 93 43 chr13 35680357 35680519 -66192650 + MER105 DNA DNA 34 203 -1 329 248 88 93 chr13 35680756 35680887 -66192282 + L1MC4 LINE L1 7623 7754 -288 1781 136 51 30 chr13 35680887 35681219 -66191950 + MER44D DNA MER2_type 1 609 0 329 248 88 93 chr13 35681219 35681313 -66191856 + L1MC4 LINE L1 7754 7847 -195 1886 151 0 33 chr13 35682580 35682879 -66190290 + AluJb SINE Alu 1 289 -23 337 83 0 33 chr13 35682910 35682970 -66190199 + (CA)n Simple_repeat Simple_repeat 1 58 0 2298 104 0 0 chr13 35683006 35683304 -66189865 + AluSq SINE Alu 1 298 -15 1761 113 71 37 chr13 35685546 35685872 -66187297 - MER1B DNA MER1_type 0 339 3 270 376 133 26 chr13 35686660 35686886 -66186283 - L2 LINE L2 -25 3247 2998 1422 175 17 34 chr13 35687543 35687840 -66185329 - AluJo SINE Alu -20 292 1 360 0 0 0 chr13 35687841 35687881 -66185288 + (T)n Simple_repeat Simple_repeat 1 40 0 195 349 47 0 chr13 35688001 35688087 -66185082 + MIR3 SINE MIR 106 195 -13 343 319 119 63 chr13 35690303 35690925 -66182244 - L1M2 LINE L1 -5445 1404 628 44 46 0 0 chr13 35693351 35693416 -66179753 + AT_rich Low_complexity Low_complexity 1 65 0 2281 89 0 41 chr13 35693605 35693741 -66179428 + AluSp SINE Alu 1 141 -172 2355 66 0 35 chr13 35693741 35694060 -66179109 + AluY SINE Alu 1 308 -3 2281 89 0 41 chr13 35694060 35694239 -66178930 + AluSp SINE Alu 141 303 -10 192 77 0 0 chr13 35694255 35694281 -66178888 + (GA)n Simple_repeat Simple_repeat 2 27 0 676 169 7 0 chr13 35694327 35694469 -66178700 + L1MC1 LINE L1 5185 5327 -819 1012 183 0 24 chr13 35694475 35694644 -66178525 + FAM SINE Alu 1 165 -10 487 193 0 12 chr13 35694653 35694736 -66178433 + FRAM/FAM SINE Alu 1 79 -97 183 80 0 0 chr13 35694740 35694765 -66178404 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 268 172 0 0 chr13 35694767 35694825 -66178344 - Charlie5 DNA MER1_type -2505 107 50 4731 137 84 42 chr13 35694826 35695798 -66177371 + L1MC1 LINE L1 5319 6331 -2 2196 106 3 16 chr13 35696277 35696589 -66176580 - AluSx SINE Alu -4 308 1 183 80 0 0 chr13 35697062 35697087 -66176082 + (TG)n Simple_repeat Simple_repeat 1 25 0 183 298 95 0 chr13 35697213 35697297 -66175872 + L3 LINE CR1 631 722 -855 210 71 0 0 chr13 35697524 35697552 -66175617 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2110 142 9 0 chr13 35697924 35698256 -66174913 - MER2 DNA MER2_type -10 335 1 1614 142 0 15 chr13 35699553 35699814 -66173355 + AluSg SINE Alu 1 257 -53 32 0 0 0 chr13 35700302 35700334 -66172835 + AT_rich Low_complexity Low_complexity 1 32 0 253 289 70 23 chr13 35700547 35700675 -66172494 + L2 LINE L2 3179 3312 -1 2422 68 3 0 chr13 35700684 35700978 -66172191 - AluY SINE Alu -16 295 1 238 318 47 47 chr13 35701138 35701245 -66171924 - L2 LINE L2 -16 3256 3150 537 278 104 33 chr13 35701433 35701854 -66171315 + L1ME1 LINE L1 3877 4327 -1819 1548 214 79 18 chr13 35701857 35702314 -66170855 + L1ME1 LINE L1 5675 6159 -7 386 224 32 86 chr13 35702360 35702491 -66170678 + L1MC/D LINE L1 5474 5599 -649 1296 109 81 0 chr13 35702491 35702701 -66170468 - MER30 DNA MER1_type 0 230 4 386 224 32 86 chr13 35702701 35702833 -66170336 + L1MC/D LINE L1 5599 5737 -511 824 134 7 35 chr13 35702879 35703021 -66170148 + FLAM_C SINE Alu 3 140 -3 23 54 0 0 chr13 35703932 35703969 -66169200 + AT_rich Low_complexity Low_complexity 1 37 0 2309 104 0 0 chr13 35704186 35704485 -66168684 + AluSc SINE Alu 1 299 -10 2365 83 0 7 chr13 35705235 35705536 -66167633 + AluY SINE Alu 1 299 -12 2337 88 7 0 chr13 35706025 35706319 -66166850 - AluSx SINE Alu -16 296 1 289 296 61 0 chr13 35707251 35707349 -66165820 - MIR3 SINE MIR -28 180 77 36 23 0 0 chr13 35707493 35707536 -66165633 + AT_rich Low_complexity Low_complexity 1 43 0 1830 147 50 7 chr13 35707536 35707815 -66165354 - AluJb SINE Alu -21 291 1 345 209 47 70 chr13 35708422 35708551 -66164618 + HAL1 LINE L1 43 168 -2339 626 193 167 10 chr13 35708605 35708797 -66164372 + HAL1 LINE L1 1449 1670 -837 528 221 81 97 chr13 35708962 35709396 -66163773 + HAL1 LINE L1 1911 2337 -170 792 174 68 133 chr13 35709401 35709723 -66163446 + Charlie1b DNA MER1_type 6 306 -217 510 155 0 10 chr13 35709716 35709813 -66163356 + Charlie1b DNA MER1_type 428 523 0 * 2151 98 4 0 chr13 35709850 35710127 -66163042 + AluSx SINE Alu 1 278 -34 471 305 189 0 chr13 35710178 35710342 -66162827 + MER91A DNA MER1_type 2 196 0 580 245 87 15 chr13 35710476 35710672 -66162497 + L1ME2 LINE L1 5949 6158 -6 1712 123 0 4 chr13 35710998 35711241 -66161928 + AluSg SINE Alu 59 300 -10 473 235 39 0 chr13 35711305 35711407 -66161762 - MIR SINE MIR -106 156 51 433 272 24 8 chr13 35711510 35711635 -66161534 - MER58 DNA MER1_type -211 130 4 247 245 0 0 chr13 35711723 35711772 -66161397 + Charlie8 DNA MER1_type 125 173 -2244 1945 152 17 0 chr13 35711799 35712089 -66161080 - AluSx SINE Alu -16 296 2 22 0 0 0 chr13 35712489 35712511 -66160658 + AT_rich Low_complexity Low_complexity 1 22 0 421 62 15 0 chr13 35712603 35712668 -66160501 + MER41B LTR ERV1 481 546 -89 578 305 63 11 chr13 35714900 35715251 -66157918 + L1ME LINE L1 5396 5764 -357 198 0 0 0 chr13 35715253 35715275 -66157894 + (TG)n Simple_repeat Simple_repeat 2 23 0 703 198 0 0 chr13 35715278 35715394 -66157775 - FLAM_C SINE Alu -27 116 1 362 298 32 32 chr13 35715780 35715904 -66157265 - L2 LINE L2 -4 3268 3145 2387 125 35 5 chr13 35715914 35716290 -66156879 - MLT1B LTR MaLR -3 387 1 2303 98 3 3 chr13 35716314 35716621 -66156548 + AluSp SINE Alu 1 307 -6 327 258 32 11 chr13 35718686 35718779 -66154390 + L2 LINE L2 3218 3312 -1 271 301 264 0 chr13 35718863 35719056 -66154113 + MIR SINE MIR 14 257 -5 1944 149 3 0 chr13 35719079 35719404 -66153765 + AluJb SINE Alu 1 326 0 2142 135 16 11 chr13 35719635 35720006 -66153163 - L1MB3 LINE L1 -7 6176 5804 1519 138 20 126 chr13 35720041 35720397 -66152772 - AluYb8 SINE Alu 0 318 1 2443 62 3 31 chr13 35720480 35720800 -66152369 - AluY SINE Alu 0 311 1 246 279 128 0 chr13 35722510 35722596 -66150573 - MER5A DNA MER1_type -87 102 6 1909 137 7 3 chr13 35723501 35723809 -66149360 + AluSg SINE Alu 1 309 0 21 36 0 0 chr13 35724322 35724350 -66148819 + AT_rich Low_complexity Low_complexity 1 28 0 183 368 45 45 chr13 35724696 35724919 -66148250 + L2 LINE L2 2607 2829 -485 688 278 75 82 chr13 35725348 35725812 -66147357 - L2 LINE L2 -710 2604 2144 188 357 12 24 chr13 35726360 35726444 -66146725 + L2 LINE L2 2592 2674 -640 28 0 0 0 chr13 35726444 35726472 -66146697 + AT_rich Low_complexity Low_complexity 1 28 0 1960 146 3 7 chr13 35726473 35726761 -66146408 - AluJb SINE Alu -25 287 1 440 333 98 14 chr13 35726761 35727037 -66146132 + L2 LINE L2 2662 2960 -354 192 156 172 47 chr13 35727122 35727186 -66145983 + L2 LINE L2 3150 3221 -92 2170 66 14 3 chr13 35727517 35727805 -66145364 + AluY SINE Alu 1 291 -20 664 277 40 68 chr13 35728106 35728162 -66145007 - MIR SINE MIR 0 262 206 2638 3 0 0 chr13 35728162 35728478 -66144691 - AluYa5 SINE Alu 0 316 1 664 277 40 68 chr13 35728478 35728669 -66144500 - MIR SINE MIR -56 206 21 193 154 0 26 chr13 35728741 35728780 -66144389 - MIR SINE MIR -7 255 218 696 306 128 30 chr13 35728999 35729192 -66143977 - L2 LINE L2 -410 2904 2731 1490 180 39 7 chr13 35729192 35729476 -66143693 + AluJb SINE Alu 1 293 -19 2451 80 3 0 chr13 35729480 35729780 -66143389 + AluSp SINE Alu 1 301 -12 696 306 128 30 chr13 35729780 35730182 -66142987 - L2 LINE L2 -585 2729 2245 2225 95 0 10 chr13 35730261 35730556 -66142613 + AluSc SINE Alu 2 293 -16 1383 88 5 5 chr13 35731087 35731279 -66141890 + AluY SINE Alu 1 192 -119 2374 203 3 52 chr13 35732047 35732092 -66141077 + L1M4 LINE L1 3653 3699 -2447 892 152 0 36 chr13 35732092 35732230 -66140939 + FLAM_A SINE Alu 1 133 0 2374 203 3 52 chr13 35732230 35732407 -66140762 + L1M4 LINE L1 3699 3883 -2263 2201 89 34 0 chr13 35732407 35732700 -66140469 + AluSq SINE Alu 1 303 -10 2374 203 3 52 chr13 35732700 35733057 -66140112 + L1M4 LINE L1 3883 4205 -1941 2108 146 0 3 chr13 35733086 35733388 -66139781 - AluSx SINE Alu -11 301 1 2761 214 39 64 chr13 35733398 35733609 -66139560 - L1MEc LINE L1 -2947 3268 3053 2011 127 7 3 chr13 35733609 35733901 -66139268 - AluSq SINE Alu -20 293 1 2761 214 39 64 chr13 35733901 35734617 -66138552 - L1MEc LINE L1 -3162 3053 2364 982 144 0 40 chr13 35734635 35734808 -66138361 - AluJo/FRAM SINE Alu -13 299 134 1931 149 0 35 chr13 35734808 35735124 -66138045 - AluSx SINE Alu -7 305 1 381 194 103 101 chr13 35735127 35735190 -66137979 - L1MEc LINE L1 -3854 2361 2300 2062 138 14 0 chr13 35735190 35735487 -66137682 - AluSx SINE Alu -11 301 1 381 194 103 101 chr13 35735487 35735736 -66137433 - L1MEc LINE L1 -3915 2300 2094 409 89 36 0 chr13 35735740 35735796 -66137373 - FAM SINE Alu -23 162 105 408 335 132 16 chr13 35736014 35736333 -66136836 - L1MEc LINE L1 -6012 384 29 306 305 30 23 chr13 35737530 35737661 -66135508 - MIR SINE MIR -110 152 21 230 121 0 0 chr13 35737849 35737882 -66135287 - L2 LINE L2 -17 3296 3264 376 231 67 0 chr13 35737915 35738019 -66135150 + L1ME4a LINE L1 5535 5645 -476 227 175 18 18 chr13 35738132 35738189 -66134980 - MLT2C1 LTR ERVL 0 520 464 1733 157 44 29 chr13 35738222 35738566 -66134603 - MLT2C1 LTR ERVL -48 349 1 299 291 55 24 chr13 35738836 35738963 -66134206 - MLT1L LTR MaLR -335 280 150 424 282 166 11 chr13 35739348 35739529 -66133640 - MER63A DNA MER1_type 0 210 2 242 163 0 0 chr13 35739623 35739666 -66133503 - L1MB5 LINE L1 -1 6173 6131 2074 129 3 3 chr13 35739752 35740070 -66133099 + AluSx SINE Alu 1 318 0 1087 273 146 57 chr13 35740070 35740915 -66132254 - L1MC4a LINE L1 -1634 6174 5255 2161 95 28 0 chr13 35741084 35741367 -66131802 - AluSg SINE Alu -19 291 1 2961 132 104 20 chr13 35743056 35743594 -66129575 - LTR59 LTR ERV1 -6 591 9 1903 90 124 0 chr13 35745368 35745634 -66127535 + AluSp SINE Alu 1 299 -14 200 273 18 45 chr13 35745817 35745927 -66127242 + GA-rich Low_complexity Low_complexity 3 109 0 243 223 121 79 chr13 35746062 35746134 -66127035 + L1ME4a LINE L1 5875 5943 -178 2178 104 0 0 chr13 35746134 35746421 -66126748 - AluSq SINE Alu -26 287 1 243 223 121 79 chr13 35746421 35746563 -66126606 + L1ME4a LINE L1 5943 6098 -23 530 193 128 9 chr13 35746605 35746714 -66126455 + FLAM_C SINE Alu 1 122 -11 27 0 0 0 chr13 35746714 35746741 -66126428 + AT_rich Low_complexity Low_complexity 1 27 0 2376 82 3 0 chr13 35746920 35747214 -66125955 - AluSg SINE Alu -15 295 1 1784 119 236 9 chr13 35747312 35747655 -66125514 - MER61C LTR ERV1 0 434 14 235 274 44 25 chr13 35747676 35747781 -66125388 - MER5A DNA MER1_type -65 124 7 303 163 0 75 chr13 35747788 35747868 -66125301 + Charlie7 DNA MER1_type 38 111 -2501 * 369 211 88 35 chr13 35747838 35748009 -66125160 + Charlie7 DNA MER1_type 2432 2611 -1 2197 99 3 45 chr13 35748407 35748720 -66124449 + AluSg SINE Alu 2 301 -9 738 206 44 22 chr13 35748864 35749044 -66124125 - HAL1 LINE L1 -976 1531 1348 4701 235 107 103 chr13 35749108 35750072 -66123097 + HAL1 LINE L1 138 1097 -1410 1364 98 0 5 chr13 35750072 35750256 -66122913 + AluSg/x SINE Alu 128 310 0 4701 235 107 103 chr13 35750256 35751457 -66121712 + HAL1 LINE L1 1097 2495 -12 320 302 12 0 chr13 35752337 35752423 -66120746 + MER5B DNA MER1_type 1 87 -91 1620 202 57 95 chr13 35752626 35752816 -66120353 - MLT1D LTR MaLR -1 504 308 2204 106 0 28 chr13 35752816 35753136 -66120033 - AluSx SINE Alu -1 311 1 1620 202 57 95 chr13 35753136 35753148 -66120021 - MLT1D LTR MaLR -197 308 297 2114 91 24 24 chr13 35753148 35753445 -66119724 - AluSg SINE Alu -13 297 1 1620 202 57 95 chr13 35753445 35753765 -66119404 - MLT1D LTR MaLR -208 297 1 216 212 99 113 chr13 35754151 35754302 -66118867 - MER5A DNA MER1_type -40 149 1 2342 92 0 3 chr13 35754335 35754630 -66118539 - AluSg SINE Alu -16 294 1 1053 187 0 12 chr13 35754718 35754884 -66118285 - FRAM SINE Alu -2 164 1 199 240 156 101 chr13 35756096 35756209 -66116960 + MIR SINE MIR 49 177 -85 2353 86 0 0 chr13 35756209 35756499 -66116670 - AluSg SINE Alu -19 291 2 199 240 156 101 chr13 35756499 35756564 -66116605 + MIR SINE MIR 177 237 -25 5978 147 22 45 chr13 35756760 35756879 -66116290 + L1MC2 LINE L1 5186 5306 -1038 2013 97 0 88 chr13 35756879 35757198 -66115971 + AluSg SINE Alu 1 291 -19 5978 147 22 45 chr13 35757198 35758201 -66114968 + L1MC2 LINE L1 5306 6283 -61 2127 106 0 82 chr13 35758201 35758541 -66114628 - AluSx SINE Alu 0 312 1 5978 147 22 45 chr13 35758541 35758594 -66114575 + L1MC2 LINE L1 6283 6336 -8 1911 113 3 56 chr13 35758942 35759288 -66113881 - AluSq SINE Alu 0 330 1 417 254 0 29 chr13 35759728 35759866 -66113303 - L1ME4a LINE L1 0 6121 5988 1308 250 145 38 chr13 35759993 35760489 -66112680 + L2 LINE L2 1560 2132 -1182 2287 110 13 0 chr13 35760489 35760789 -66112380 - AluSx SINE Alu -8 304 1 1308 250 145 38 chr13 35760789 35760892 -66112277 + L2 LINE L2 2132 2223 -1091 1127 168 6 0 chr13 35760892 35761065 -66112104 - AluJo/FRAM SINE Alu -10 302 129 1573 126 0 9 chr13 35761066 35761289 -66111880 - AluSq SINE Alu -92 221 1 770 245 81 66 chr13 35762063 35762242 -66110927 + L2 LINE L2 2782 2957 -356 2210 86 48 0 chr13 35762242 35762534 -66110635 - AluSp SINE Alu -5 308 3 770 245 81 66 chr13 35762534 35762875 -66110294 + L2 LINE L2 2957 3312 -1 372 43 0 0 chr13 35763323 35763369 -66109800 + (TG)n Simple_repeat Simple_repeat 1 46 0 1925 127 4 0 chr13 35763369 35763644 -66109525 - AluSp SINE Alu -33 280 5 355 286 85 20 chr13 35763917 35764116 -66109053 - L1ME LINE L1 -346 5775 5564 2864 138 12 33 chr13 35764836 35765147 -66108022 + L1MB5 LINE L1 5699 5998 -176 2673 133 30 30 chr13 35765147 35765187 -66107982 - MSTA LTR MaLR 0 428 389 1796 155 3 11 chr13 35765187 35765493 -66107676 + AluJb SINE Alu 1 304 0 2673 133 30 30 chr13 35765493 35765879 -66107290 - MSTA LTR MaLR -38 390 1 2864 138 12 33 chr13 35765879 35766052 -66107117 + L1MB5 LINE L1 5998 6173 -1 204 304 217 11 chr13 35766199 35766291 -66106878 - L2 LINE L2 0 3272 3162 2277 109 0 7 chr13 35766745 35767049 -66106120 - AluSg SINE Alu -8 302 1 5163 137 35 12 chr13 35767127 35767595 -66105574 - L1MA8 LINE L1 -24 6267 5768 243 0 0 0 chr13 35767595 35767622 -66105547 + (TG)n Simple_repeat Simple_repeat 2 28 0 5163 137 35 12 chr13 35767622 35768042 -66105127 - L1MA8 LINE L1 -523 5768 5359 845 172 14 0 chr13 35768042 35768187 -66104982 - FRAM SINE Alu -10 166 20 263 143 20 0 chr13 35768194 35768243 -66104926 - L1MA8 LINE L1 -923 5368 5319 1745 122 103 4 chr13 35768800 35769071 -66104098 + AluSx SINE Alu 1 298 -14 931 246 98 27 chr13 35769211 35769548 -66103621 - L1MC4a LINE L1 -1810 5998 5638 236 185 77 15 chr13 35769592 35769657 -66103512 - MER69B DNA AcHobo -8 1218 1150 5038 234 18 12 chr13 35770276 35771436 -66101733 - MER69B DNA AcHobo -59 1167 1 875 316 30 12 chr13 35771441 35771780 -66101389 - L1MC4a LINE L1 -2201 5607 5263 965 209 100 7 chr13 35772655 35772923 -66100246 + L1MA9 LINE L1 6001 6291 -9 336 292 0 11 chr13 35773147 35773236 -66099933 - MIR3 SINE MIR -8 200 113 638 260 77 20 chr13 35773492 35773688 -66099481 + MIR SINE MIR 56 262 0 2139 118 0 3 chr13 35773809 35774105 -66099064 - AluSx SINE Alu -17 295 1 788 143 63 8 chr13 35774876 35775002 -66098167 + FLAM_A SINE Alu 1 133 0 369 0 0 0 chr13 35775303 35775344 -66097825 + (TA)n Simple_repeat Simple_repeat 1 41 0 2338 92 10 0 chr13 35775358 35775662 -66097507 - AluSx SINE Alu 0 312 6 232 347 41 31 chr13 35775688 35775786 -66097383 + L2 LINE L2 3141 3239 -33 527 257 23 39 chr13 35775821 35776064 -66097105 + L1ME1 LINE L1 5690 5928 -238 33 25 0 0 chr13 35776064 35776104 -66097065 + AT_rich Low_complexity Low_complexity 1 40 0 2329 84 7 0 chr13 35777566 35777865 -66095304 + AluSq SINE Alu 1 301 -12 310 154 200 0 chr13 35778457 35778522 -66094647 + MER81 DNA DNA 1 78 -36 502 180 30 20 chr13 35778522 35778622 -66094547 + FLAM_C SINE Alu 40 140 -3 2285 110 0 3 chr13 35778786 35779095 -66094074 - AluSg SINE Alu -2 308 1 1992 128 0 4 chr13 35779233 35779514 -66093655 - AluSx SINE Alu -32 280 1 252 0 0 0 chr13 35781170 35781198 -66091971 + (ATAGG)n Simple_repeat Simple_repeat 4 31 0 1906 106 16 4 chr13 35781539 35781794 -66091375 - AluSg SINE Alu -52 258 1 964 222 64 13 chr13 35782660 35782894 -66090275 + MIR SINE MIR 14 259 -3 27 0 0 0 chr13 35784229 35784256 -66088913 + AT_rich Low_complexity Low_complexity 1 27 0 1837 92 117 50 chr13 35784642 35784925 -66088244 + AluJo SINE Alu 1 302 0 358 308 51 62 chr13 35784937 35785132 -66088037 + LTR16B LTR ERVL 34 226 -238 2677 26 0 7 chr13 35785213 35785517 -66087652 - L1PA4 LINE L1 -3 6152 5851 1965 118 22 7 chr13 35785618 35785889 -66087280 - AluSx SINE Alu -37 275 1 578 173 27 0 chr13 35785889 35785999 -66087170 + L1MC3 LINE L1 7627 7739 -46 1120 101 34 45 chr13 35786000 35786179 -66086990 - AluJb SINE Alu -52 260 84 358 278 0 26 chr13 35786256 35786371 -66086798 - HAL1 LINE L1 -349 2158 2047 278 353 45 8 chr13 35786805 35786938 -66086231 - L3 LINE CR1 -1011 566 429 1801 130 0 4 chr13 35787843 35788113 -66085056 + AluSg SINE Alu 42 310 0 771 270 25 0 chr13 35788336 35788540 -66084629 - MIR SINE MIR -51 211 3 564 129 0 0 chr13 35789712 35789813 -66083356 + (TCCA)n Simple_repeat Simple_repeat 2 102 0 334 301 80 9 chr13 35789843 35789956 -66083213 - L2 LINE L2 -15 3257 3137 2409 89 0 3 chr13 35790666 35790970 -66082199 + AluSq SINE Alu 1 303 -10 207 296 0 28 chr13 35791183 35791254 -66081915 - MIR SINE MIR -38 224 156 * 234 103 0 176 chr13 35791252 35791320 -66081849 + L2 LINE L2 3257 3312 -1 239 266 16 16 chr13 35791323 35791387 -66081782 - MIR SINE MIR -109 153 90 882 57 0 0 chr13 35792289 35792395 -66080774 + AluSp/q SINE Alu 200 305 -8 1209 164 13 44 chr13 35792395 35792620 -66080549 - AluJo SINE Alu -30 282 65 279 0 0 0 chr13 35793264 35793295 -66079874 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 884 152 0 0 chr13 35793299 35793424 -66079745 - FLAM_C SINE Alu -18 125 1 1406 217 15 0 chr13 35793509 35793772 -66079397 + Tigger7 DNA MER2_type 1 267 -2220 571 135 101 0 chr13 35793771 35793860 -66079309 + Tigger7 DNA MER2_type 2390 2487 0 * 184 242 0 97 chr13 35793891 35793953 -66079216 + L2 LINE L2 2985 3040 -232 424 250 0 0 chr13 35794023 35794115 -66079054 + MER93a LTR ERV1 7 98 -304 646 257 147 64 chr13 35794136 35794230 -66078939 + L2 LINE L2 2922 3007 -306 2282 102 0 7 chr13 35794230 35794533 -66078636 - AluSx SINE Alu -11 301 1 646 257 147 64 chr13 35794533 35794784 -66078385 + L2 LINE L2 3007 3296 -17 186 43 0 0 chr13 35794787 35794810 -66078359 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 954 185 130 0 chr13 35795852 35796052 -66077117 - L1MC3 LINE L1 -265 7520 7295 1556 176 61 71 chr13 35796054 35796280 -66076889 - MLT1B LTR MaLR -1 389 167 8423 13 0 0 chr13 35796280 35797260 -66075909 + L1PA2 LINE L1 5176 6155 0 1556 176 61 71 chr13 35797260 35797426 -66075743 - MLT1B LTR MaLR -223 167 1 428 178 75 9 chr13 35797428 35797535 -66075634 - L1MC3 LINE L1 -492 7293 7180 2116 103 7 0 chr13 35797542 35797854 -66075315 - AluSx SINE Alu 0 314 1 1783 189 9 96 chr13 35797856 35798166 -66075003 + MSTB LTR MaLR 1 262 -164 548 202 182 0 chr13 35798166 35798265 -66074904 + FLAM_C SINE Alu 1 117 -16 1783 189 9 96 chr13 35798265 35798404 -66074765 + MSTB LTR MaLR 262 411 -15 2708 166 36 24 chr13 35798440 35799144 -66074025 - L1MC3 LINE L1 -1128 6657 5728 514 268 124 0 chr13 35799265 35799418 -66073751 + MIR SINE MIR 1 172 -90 503 327 75 10 chr13 35799667 35799866 -66073303 + L3 LINE CR1 1012 1223 -354 314 239 137 17 chr13 35799867 35799984 -66073185 + L1ME4a LINE L1 5968 6098 -23 2617 68 0 0 chr13 35800034 35800345 -66072824 + AluSx SINE Alu 1 311 -1 309 330 0 9 chr13 35800544 35800650 -66072519 + L3 LINE CR1 1266 1370 -207 1568 199 85 47 chr13 35800983 35801431 -66071738 - MLT1C LTR MaLR 0 467 3 285 228 101 13 chr13 35801607 35801686 -66071483 + L2 LINE L2 3186 3271 -1 2278 115 0 0 chr13 35801869 35802181 -66070988 + AluSx SINE Alu 1 312 0 1158 280 23 33 chr13 35802836 35803229 -66069940 - L2 LINE L2 -1883 1431 1043 1792 201 3 12 chr13 35803266 35803594 -66069575 - MLT1B LTR MaLR -2 388 64 389 151 187 43 chr13 35803581 35803720 -66069449 + MER112 DNA MER1_type 6 164 -96 * 521 238 89 92 chr13 35803760 35803836 -66069333 + HAL1 LINE L1 2118 2193 -314 1798 137 83 11 chr13 35803836 35804114 -66069055 - AluSp SINE Alu -15 298 1 521 238 89 92 chr13 35804114 35804428 -66068741 + HAL1 LINE L1 2193 2507 0 630 167 0 0 chr13 35804625 35804745 -66068424 + HSMAR2 DNA Mariner 1182 1301 -1 1082 196 34 0 chr13 35804820 35805024 -66068145 + MIR SINE MIR 13 223 -39 22 0 0 0 chr13 35805372 35805394 -66067775 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr13 35805436 35805468 -66067701 + AT_rich Low_complexity Low_complexity 1 32 0 2392 148 50 0 chr13 35806485 35806889 -66066280 + L1MB3 LINE L1 5719 6142 -41 2399 70 3 13 chr13 35806889 35807203 -66065966 + AluY SINE Alu 1 311 0 183 182 0 0 chr13 35808690 35808723 -66064446 - L2 LINE L2 -352 2962 2930 195 264 0 38 chr13 35809189 35809242 -66063927 + L2 LINE L2 3004 3054 -218 491 81 0 0 chr13 35809457 35809519 -66063650 + Alu SINE Alu 2 63 -248 866 242 104 76 chr13 35810444 35810727 -66062442 + L2 LINE L2 2498 2772 -541 2357 74 3 16 chr13 35810727 35811038 -66062131 + AluSp SINE Alu 1 307 -6 866 242 104 76 chr13 35811038 35811512 -66061657 + L2 LINE L2 2772 3313 0 917 226 20 10 chr13 35812072 35812276 -66060893 - MER58A DNA MER1_type 0 224 19 1380 182 6 64 chr13 35813373 35813686 -66059483 - AluJb SINE Alu -17 295 1 238 267 0 0 chr13 35814076 35814121 -66059048 - L2 LINE L2 -5 3267 3223 222 300 20 0 chr13 35814323 35814373 -66058796 - L3 LINE CR1 -9 1568 1518 223 154 51 0 chr13 35814411 35814450 -66058719 - MIR SINE MIR -130 78 38 461 296 106 25 chr13 35814985 35815184 -66057985 - MIR SINE MIR -2 260 46 258 111 89 0 chr13 35815205 35815250 -66057919 + MER113 DNA MER1_type? 35 83 -438 2363 98 0 0 chr13 35815269 35815565 -66057604 - AluSg SINE Alu -14 296 1 2198 84 7 0 chr13 35815767 35816051 -66057118 - AluSp SINE Alu -27 286 1 2116 123 14 0 chr13 35816075 35816367 -66056802 - AluSx SINE Alu -16 296 1 28 86 0 0 chr13 35817219 35817289 -66055880 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 35817622 35817643 -66055526 + AT_rich Low_complexity Low_complexity 1 21 0 1932 125 12 65 chr13 35817645 35817966 -66055203 + AluSg SINE Alu 1 304 -6 2024 128 3 10 chr13 35817968 35818256 -66054913 + AluSx SINE Alu 1 286 -26 231 183 33 0 chr13 35818256 35818316 -66054853 + (TA)n Simple_repeat Simple_repeat 1 62 0 345 309 29 7 chr13 35818323 35818459 -66054710 - L1ME4a LINE L1 -12 6109 5971 410 296 146 39 chr13 35818644 35818846 -66054323 - MIR SINE MIR 0 262 30 2033 133 10 26 chr13 35818846 35819154 -66054015 - AluSx SINE Alu -9 303 1 410 296 146 39 chr13 35819154 35819184 -66053985 - MIR SINE MIR -232 30 5 2649 34 0 0 chr13 35820292 35820588 -66052581 - AluY SINE Alu -15 296 1 202 229 0 0 chr13 35822346 35822394 -66050775 + A-rich Low_complexity Low_complexity 1 48 0 2462 93 0 0 chr13 35822707 35823019 -66050150 - AluSx SINE Alu 0 312 1 1645 146 71 11 chr13 35823392 35823672 -66049497 - AluSx SINE Alu -12 300 4 23 33 0 0 chr13 35824053 35824083 -66049086 + AT_rich Low_complexity Low_complexity 1 30 0 245 305 0 0 chr13 35824234 35824316 -66048853 - L1ME4a LINE L1 -238 5883 5802 388 226 38 9 chr13 35824759 35824865 -66048304 - LTR41 LTR ERVL -595 178 70 1751 164 20 13 chr13 35825428 35825733 -66047436 + AluJo SINE Alu 6 312 0 25 31 0 0 chr13 35826699 35826731 -66046438 + AT_rich Low_complexity Low_complexity 1 32 0 415 220 92 52 chr13 35826767 35826940 -66046229 - HAL1 LINE L1 -56 2451 2272 1575 211 103 44 chr13 35827503 35827978 -66045191 - MLT1D LTR MaLR 0 505 3 2397 74 0 3 chr13 35828066 35828362 -66044807 - AluY SINE Alu -16 295 1 631 224 48 0 chr13 35828632 35828757 -66044412 - FLAM_C SINE Alu -1 132 2 240 179 0 119 chr13 35829249 35829316 -66043853 + L2 LINE L2 3214 3272 0 1489 193 61 4 chr13 35829319 35829599 -66043570 + AluJb SINE Alu 1 296 -16 1148 242 61 37 chr13 35829984 35830360 -66042809 + L1MB3 LINE L1 5 389 -6153 2061 151 78 20 chr13 35830361 35830759 -66042410 - MER61C LTR ERV1 0 434 14 28736 91 31 31 chr13 35830777 35831372 -66041797 - MER61C-int LTR ERV1 0 5217 4623 2003 141 10 0 chr13 35831372 35831663 -66041506 + AluSx SINE Alu 1 294 -18 28736 91 31 31 chr13 35831663 35835329 -66037840 - MER61C-int LTR ERV1 -594 4623 958 3058 111 18 47 chr13 35835329 35835842 -66037327 - MER61C-int LTR ERV1 -4377 840 343 951 151 54 96 chr13 35835821 35836060 -66037109 - MER61C-int LTR ERV1 -4987 230 2 * 2397 140 35 14 chr13 35836064 35836489 -66036680 - MER61C LTR ERV1 -4 430 13 2427 242 10 4 chr13 35836492 35837009 -66036160 + L1MB3 LINE L1 389 908 -5634 2307 186 16 15 chr13 35837009 35837635 -66035534 + L1MB3 LINE L1 4703 6506 -175 * 3356 154 34 52 chr13 35837612 35837724 -66035445 + L1MB7 LINE L1 5994 6107 -575 1877 156 0 17 chr13 35837724 35838012 -66035157 + AluSx SINE Alu 5 287 -25 3356 154 34 52 chr13 35838012 35838585 -66034584 + L1MB7 LINE L1 6107 6666 -16 2197 117 3 0 chr13 35838853 35839151 -66034018 + AluSx SINE Alu 1 299 -13 285 195 81 11 chr13 35839229 35839316 -66033853 + L1MC5 LINE L1 7833 7925 -36 255 33 0 0 chr13 35839534 35839564 -66033605 - MLT1B LTR MaLR 0 390 361 1397 141 0 65 chr13 35839576 35839839 -66033330 - MLT1B LTR MaLR -144 246 1 1687 176 14 3 chr13 35839895 35840185 -66032984 - AluJb SINE Alu -19 293 1 281 127 0 73 chr13 35840540 35840595 -66032574 + MER117 DNA MER1_type 67 117 -80 472 221 47 116 chr13 35840641 35840831 -66032338 - L2 LINE L2 -6 3307 3131 2908 86 103 0 chr13 35840838 35841244 -66031925 - LTR7 LTR ERV1 -2 448 1 2438 96 48 13 chr13 35841244 35841621 -66031548 - HERVH LTR ERV1 0 7713 7324 1431 120 19 0 chr13 35841621 35841837 -66031332 - HERVH LTR ERV1 -1894 5819 5600 4623 131 0 1 chr13 35841838 35842501 -66030668 - HERVH LTR ERV1 -2564 5149 4488 5675 104 28 2 chr13 35842503 35843336 -66029833 - HERVH LTR ERV1 -3720 3993 3140 * 19416 101 14 30 chr13 35843315 35846359 -66026810 - HERVH LTR ERV1 -4718 2995 1 3130 78 64 0 chr13 35846361 35846782 -66026387 - LTR7 LTR ERV1 -2 448 1 2845 85 125 5 chr13 35847359 35847759 -66025410 - LTR7 LTR ERV1 -2 448 1 2474 93 0 0 chr13 35847930 35848242 -66024927 - AluSq SINE Alu -1 312 1 302 281 50 33 chr13 35848258 35848379 -66024790 + MER5A DNA MER1_type 2 124 -65 560 265 20 33 chr13 35848673 35848824 -66024345 - MER46C DNA MER2_type -1 337 189 1029 207 225 20 chr13 35848846 35849307 -66023862 + L1ME3A LINE L1 5601 6170 0 255 211 18 18 chr13 35849381 35849438 -66023731 - L2 LINE L2 -14 3299 3243 2021 141 0 7 chr13 35849451 35849748 -66023421 - AluJb SINE Alu -16 296 2 302 333 83 0 chr13 35851121 35851241 -66021928 - L2 LINE L2 -5 3308 3179 203 378 36 40 chr13 35851730 35851952 -66021217 - L2 LINE L2 -226 3046 2826 328 78 0 39 chr13 35852090 35852141 -66021028 + L1MB2 LINE L1 6121 6169 -2 1632 136 7 66 chr13 35852731 35853018 -66020151 - AluJo SINE Alu -19 293 24 2048 146 0 0 chr13 35853039 35853340 -66019829 - AluSx SINE Alu -11 301 1 202 229 0 0 chr13 35855238 35855286 -66017883 + A-rich Low_complexity Low_complexity 1 48 0 27 0 0 0 chr13 35855547 35855574 -66017595 + AT_rich Low_complexity Low_complexity 1 27 0 2487 87 0 0 chr13 35855620 35855932 -66017237 - AluSx SINE Alu 0 312 1 452 118 147 0 chr13 35856437 35856505 -66016664 + AluJ/FLAM SINE Alu 2 79 -233 180 278 19 56 chr13 35856688 35856796 -66016373 - L2 LINE L2 -167 3146 3043 2117 127 0 0 chr13 35856796 35857095 -66016074 - AluSx SINE Alu -13 299 1 1984 108 35 3 chr13 35857351 35857638 -66015531 + AluSp SINE Alu 1 296 -17 1188 170 0 0 chr13 35858449 35858631 -66014538 - AluJo SINE Alu -130 182 1 2039 123 10 17 chr13 35859018 35859318 -66013851 + AluSx SINE Alu 1 298 -14 1211 162 32 112 chr13 35859557 35859990 -66013179 - Charlie1b DNA MER1_type -2265 496 112 2218 123 0 0 chr13 35859990 35860290 -66012879 + AluSx SINE Alu 1 300 -12 1211 162 32 112 chr13 35860290 35860391 -66012778 - Charlie1b DNA MER1_type -2649 112 5 21 57 0 0 chr13 35861293 35861328 -66011841 + AT_rich Low_complexity Low_complexity 1 35 0 193 122 0 41 chr13 35862077 35862126 -66011043 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 202 356 76 15 chr13 35862876 35863008 -66010161 - L2 LINE L2 -1 3312 3173 278 321 12 0 chr13 35863022 35863103 -66010066 - L2 LINE L2 -972 2342 2261 1218 160 10 15 chr13 35863419 35863625 -66009544 - AluJo SINE Alu -18 294 90 694 257 117 23 chr13 35863639 35863896 -66009273 + L2 LINE L2 3028 3308 -5 191 297 0 31 chr13 35864037 35864101 -66009068 + MIR SINE MIR 175 236 -26 1138 199 40 16 chr13 35864146 35864397 -66008772 + LTR8 LTR ERV1 1 257 -434 1151 208 59 109 chr13 35864404 35864955 -66008214 + LTR8 LTR ERV1 26 714 -13 365 191 206 8 chr13 35865140 35865266 -66007903 - MIR SINE MIR -77 185 35 1973 158 69 17 chr13 35865323 35865670 -66007499 - MLT1A1 LTR MaLR 0 365 1 270 239 0 0 chr13 35865996 35866067 -66007102 + (TA)n Simple_repeat Simple_repeat 2 72 0 1543 170 28 28 chr13 35866149 35866437 -66006732 + AluJb SINE Alu 1 288 -24 21 57 0 0 chr13 35866440 35866475 -66006694 + AT_rich Low_complexity Low_complexity 1 35 0 210 274 143 36 chr13 35866620 35866704 -66006465 + MIR SINE MIR 8 100 -162 2890 3 0 0 chr13 35866947 35867253 -66005916 + AluYa5 SINE Alu 1 306 -5 187 300 0 78 chr13 35868247 35868337 -66004832 + MIR SINE MIR 176 258 -4 1697 96 4 0 chr13 35868351 35868581 -66004588 + AluSx SINE Alu 53 283 -29 240 35 0 0 chr13 35868581 35868610 -66004559 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr13 35869833 35869856 -66003313 + AT_rich Low_complexity Low_complexity 1 23 0 702 211 0 0 chr13 35869880 35870013 -66003156 - FLAM_C SINE Alu 0 133 1 377 165 12 59 chr13 35870070 35870155 -66003014 - HAL1 LINE L1 -107 2400 2320 970 175 57 64 chr13 35870261 35870541 -66002628 + L1ME1 LINE L1 3765 4042 -2104 1978 161 72 11 chr13 35870543 35870892 -66002277 + MLT1B LTR MaLR 1 370 -20 1192 221 88 16 chr13 35870948 35871323 -66001846 + L1ME1 LINE L1 4068 4469 -1677 3651 98 12 39 chr13 35871323 35871942 -66001227 + MER4B LTR ERV1 3 772 -7 5895 94 23 3 chr13 35871958 35872375 -66000794 - L1PB2 LINE L1 -35 6116 5709 2302 55 48 3 chr13 35872375 35872665 -66000504 - AluY SINE Alu -8 303 1 5895 94 23 3 chr13 35872665 35873124 -66000045 - L1PB2 LINE L1 -442 5709 5223 2560 226 38 27 chr13 35873139 35873852 -65999317 + L1ME1 LINE L1 4463 5183 -963 1013 186 46 5 chr13 35873852 35874031 -65999138 + MLT1A2 LTR MaLR 1 187 -187 968 171 0 57 chr13 35874031 35874207 -65998962 + LTR59 LTR ERV1 1 166 -431 1791 86 0 0 chr13 35874207 35874429 -65998740 + AluSq SINE Alu 1 222 -91 4259 65 73 39 chr13 35874434 35875022 -65998147 + LTR14B LTR ERVK 1 608 0 488 169 24 0 chr13 35875022 35875105 -65998064 + AluSg/x SINE Alu 217 301 -8 2544 117 42 70 chr13 35875109 35875563 -65997606 + LTR59 LTR ERV1 155 595 -2 1785 181 36 80 chr13 35875566 35875980 -65997189 + MSTD LTR MaLR 1 396 0 877 223 0 21 chr13 35875985 35876178 -65996991 + MLT1A2 LTR MaLR 186 374 0 3973 214 26 18 chr13 35876182 35876358 -65996811 + L1ME1 LINE L1 5186 5359 -975 2256 150 33 25 chr13 35876358 35876719 -65996450 - THE1B LTR MaLR 0 364 1 3973 214 26 18 chr13 35876719 35877522 -65995647 + L1ME1 LINE L1 5359 6333 -1 359 192 39 13 chr13 35878195 35878273 -65994896 + Tigger5 DNA MER2_type 1 80 -2243 312 161 16 16 chr13 35878277 35878339 -65994830 - Tigger5 DNA MER2_type -14 2309 2248 445 131 0 0 chr13 35878341 35878402 -65994767 + Tigger5 DNA MER2_type 2263 2323 0 2316 67 3 3 chr13 35879220 35879559 -65993610 - AluY SINE Alu 0 339 1 597 143 31 0 chr13 35879969 35880067 -65993102 - AluJb SINE Alu -6 306 206 2195 121 7 0 chr13 35880410 35880716 -65992453 + AluSx SINE Alu 3 310 -2 433 192 19 58 chr13 35880811 35880915 -65992254 + MLT1H1 LTR MaLR 1 100 -455 2021 177 25 83 chr13 35880981 35881526 -65991643 - MLT2B3 LTR ERVL -44 500 1 18777 75 6 5 chr13 35881931 35885238 -65987931 - L1PA7 LINE L1 -3 6151 2836 2265 83 7 10 chr13 35885238 35885540 -65987629 - AluSp SINE Alu -12 301 1 18777 75 6 5 chr13 35885540 35885626 -65987543 - L1PA7 LINE L1 -3318 2836 2752 1426 114 14 0 chr13 35885626 35885846 -65987323 + L1PA7 LINE L1 2516 2738 -3408 467 286 26 53 chr13 35885908 35886099 -65987070 + MLT1H1 LTR MaLR 105 292 -289 279 0 0 0 chr13 35886525 35886556 -65986613 + (TA)n Simple_repeat Simple_repeat 2 32 0 408 217 48 0 chr13 35886762 35886845 -65986324 - MER45A DNA AcHobo -2 176 90 4297 146 25 50 chr13 35886959 35887101 -65986068 + L1MB3 LINE L1 5254 5398 -785 2195 131 0 0 chr13 35887101 35887406 -65985763 + AluSx SINE Alu 1 305 -7 4297 146 25 50 chr13 35887406 35887469 -65985700 + L1MB3 LINE L1 5398 5461 -722 2097 139 13 0 chr13 35887469 35887771 -65985398 + AluSx SINE Alu 1 306 -6 4297 146 25 50 chr13 35887771 35888485 -65984684 + L1MB3 LINE L1 5461 6151 -32 1481 138 117 50 chr13 35888485 35888768 -65984401 + AluJb SINE Alu 1 302 0 315 359 20 31 chr13 35888780 35888975 -65984194 + LTR16B LTR ERVL 34 226 -238 261 293 150 0 chr13 35889123 35889263 -65983906 - MARNA DNA Mariner -164 422 262 2086 129 0 20 chr13 35889266 35889569 -65983600 + AluSx SINE Alu 1 297 -15 2339 93 0 0 chr13 35890026 35890316 -65982853 + AluSg SINE Alu 1 290 -20 899 45 0 75 chr13 35890388 35890521 -65982648 + AluY SINE Alu 188 310 -1 2069 110 3 29 chr13 35890577 35890886 -65982283 + AluSx SINE Alu 1 301 -11 565 180 66 114 chr13 35891198 35891415 -65981754 + L1MC5 LINE L1 7342 7539 -422 2032 135 0 13 chr13 35891415 35891718 -65981451 + AluSx SINE Alu 1 299 -13 565 180 66 114 chr13 35891718 35891833 -65981336 + L1MC5 LINE L1 7539 7658 -303 1004 83 15 8 chr13 35891833 35891966 -65981203 + AluSq/x SINE Alu 1 134 -178 326 176 19 32 chr13 35892111 35892238 -65980931 - L1M4 LINE L1 -2826 3320 3195 1679 166 0 18 chr13 35892238 35892521 -65980648 + AluJo SINE Alu 1 278 -34 204 40 0 0 chr13 35892521 35892546 -65980623 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 2023 114 139 25 chr13 35892598 35893002 -65980167 + LTR7 LTR ERV1 1 450 0 276 304 25 0 chr13 35893103 35893182 -65979987 + L2 LINE L2 3228 3308 -5 269 140 60 0 chr13 35893185 35893235 -65979934 - MIR SINE MIR -120 142 90 450 337 59 10 chr13 35894230 35894481 -65978688 - MIR SINE MIR 0 262 5 319 291 136 0 chr13 35894945 35895048 -65978121 - MIR3 SINE MIR -23 185 69 2523 53 0 0 chr13 35895062 35895362 -65977807 - AluY SINE Alu -11 300 1 327 279 88 14 chr13 35895441 35895588 -65977581 - L1MC4 LINE L1 -195 7847 7690 1800 230 32 32 chr13 35895885 35896442 -65976727 - L1ME3 LINE L1 -8 6154 5598 1029 169 0 33 chr13 35896475 35896658 -65976511 - FRAM SINE Alu 0 176 1 439 302 44 28 chr13 35896793 35896975 -65976194 - MER5A DNA MER1_type -1 188 4 325 230 97 97 chr13 35897104 35897300 -65975869 - LTR16A LTR ERVL -254 196 1 207 0 0 0 chr13 35898106 35898129 -65975040 + (TTA)n Simple_repeat Simple_repeat 3 25 0 437 202 57 65 chr13 35898405 35898434 -65974735 + L2 LINE L2 3191 3219 -94 2276 103 10 6 chr13 35898434 35898746 -65974423 - AluSq SINE Alu 0 313 1 437 202 57 65 chr13 35898746 35898840 -65974329 + L2 LINE L2 3219 3313 0 728 171 26 0 chr13 35899592 35899709 -65973460 - FLAM_A SINE Alu -9 124 5 2613 53 0 0 chr13 35900198 35900500 -65972669 - AluSg SINE Alu -8 302 1 2202 62 6 84 chr13 35900715 35901037 -65972132 - AluSp SINE Alu -16 297 1 690 324 145 28 chr13 35901343 35901539 -65971630 + L3 LINE CR1 199 371 -1206 1939 137 0 7 chr13 35901539 35901838 -65971331 - AluJb SINE Alu -13 299 3 690 324 145 28 chr13 35901838 35902178 -65970991 + L3 LINE CR1 371 798 -779 322 235 196 10 chr13 35902175 35902277 -65970892 + L2 LINE L2 3193 3313 0 * 198 0 0 0 chr13 35902377 35902399 -65970770 + (T)n Simple_repeat Simple_repeat 1 22 0 1058 285 166 9 chr13 35903114 35903809 -65969360 - L2 LINE L2 -33 3280 2476 653 104 87 0 chr13 35904320 35904435 -65968734 - L1MA4A LINE L1 -1 6302 6178 1990 144 7 0 chr13 35904438 35904722 -65968447 - AluSx SINE Alu -26 286 1 270 81 0 0 chr13 35905252 35905289 -65967880 + AluY SINE Alu 1 37 -266 2529 42 0 3 chr13 35905289 35905578 -65967591 + AluY SINE Alu 13 300 -11 6430 81 14 11 chr13 35907971 35908456 -65964713 + L1PA11 LINE L1 4883 5365 -809 2258 116 0 0 chr13 35908456 35908757 -65964412 + AluSx SINE Alu 1 301 -11 6430 81 14 11 chr13 35908757 35909561 -65963608 + L1PA11 LINE L1 5365 6174 0 1137 114 23 11 chr13 35909984 35910159 -65963010 - AluSg/x SINE Alu -1 309 133 2291 78 7 29 chr13 35910285 35910592 -65962577 + AluY SINE Alu 1 300 -11 2576 61 0 0 chr13 35910998 35911309 -65961860 + AluY SINE Alu 1 311 0 23 33 0 0 chr13 35911644 35911674 -65961495 + AT_rich Low_complexity Low_complexity 1 30 0 413 237 169 63 chr13 35911717 35912066 -65961103 - MER77 LTR ERV1 -36 569 302 260 111 22 0 chr13 35912144 35912189 -65960980 + GA-rich Low_complexity Low_complexity 2 47 0 2222 184 63 10 chr13 35912294 35912783 -65960386 - L1MB2 LINE L1 -107 6064 5550 1084 135 0 0 chr13 35912795 35912951 -65960218 - AluSg/x SINE Alu -23 287 132 2209 103 13 3 chr13 35912951 35913253 -65959916 - AluSx SINE Alu -7 305 1 5084 197 19 41 chr13 35913255 35914345 -65958824 - L1MB2 LINE L1 -608 5563 4503 2400 88 3 0 chr13 35914345 35914652 -65958517 - AluY SINE Alu -3 308 1 5084 197 19 41 chr13 35914652 35915131 -65958038 - L1MB2 LINE L1 -1668 4503 4015 12686 26 3 0 chr13 35915140 35917405 -65955764 - L1PA7 LINE L1 -2 6152 3879 721 123 0 0 chr13 35917659 35917765 -65955404 - AluJb SINE Alu -8 304 199 334 311 15 53 chr13 35917811 35917943 -65955226 + L2 LINE L2 3138 3264 -8 493 266 135 60 chr13 35918082 35918518 -65954651 - MLT1H LTR MaLR 0 549 81 2254 69 0 4 chr13 35918766 35919040 -65954129 - AluY SINE Alu -20 291 19 201 300 91 45 chr13 35919150 35919260 -65953909 + MIR SINE MIR 118 232 -30 2075 111 0 34 chr13 35919335 35919633 -65953536 - AluSg SINE Alu -22 288 1 720 278 69 33 chr13 35919825 35920131 -65953038 + MLT1I LTR MaLR 93 409 0 342 229 143 57 chr13 35920635 35920775 -65952394 - L1ME4a LINE L1 -3 6118 5967 191 146 24 0 chr13 35920903 35920944 -65952225 + CT-rich Low_complexity Low_complexity 1 42 0 2208 144 19 16 chr13 35921089 35921463 -65951706 - THE1C LTR MaLR 0 375 1 2136 109 0 10 chr13 35921585 35921878 -65951291 - AluSc SINE Alu -19 290 1 181 345 17 0 chr13 35921993 35922051 -65951118 + L2 LINE L2 333 391 -2923 1228 215 101 24 chr13 35922201 35922615 -65950554 - L1MD2 LINE L1 -253 6106 5661 1051 298 27 33 chr13 35922615 35922935 -65950234 - L1MC4 LINE L1 -1095 6947 6629 2295 101 0 3 chr13 35922935 35923242 -65949927 - AluSx SINE Alu -6 306 1 1051 298 27 33 chr13 35923242 35923404 -65949765 - L1MC4 LINE L1 -1413 6629 6468 2063 171 97 7 chr13 35923405 35923827 -65949342 - LOR1b LTR ERV1 -1 460 1 594 154 0 0 chr13 35923827 35923918 -65949251 - LOR1b-int LTR ERV1 0 8120 8030 * 1475 94 14 84 chr13 35923917 35924192 -65948977 - LOR1-int LTR ERV1 -2056 6064 5809 * 9192 106 32 21 chr13 35924191 35925789 -65947380 - LOR1-int LTR ERV1 -2596 5524 3908 3466 121 66 19 chr13 35925783 35927023 -65946146 - LOR1-int LTR ERV1 -4798 3322 1984 * 276 30 0 0 chr13 35927072 35927105 -65946064 + (TCC)n Simple_repeat Simple_repeat 1 33 0 198 345 56 28 chr13 35927333 35927475 -65945694 + MER5A DNA MER1_type 16 161 -28 295 250 40 13 chr13 35927516 35927592 -65945577 + L2 LINE L2 3192 3269 -3 769 145 15 8 chr13 35927725 35927856 -65945313 - AluSq/x SINE Alu -180 132 1 23 33 0 0 chr13 35927859 35927889 -65945280 + AT_rich Low_complexity Low_complexity 1 30 0 311 164 55 0 chr13 35927966 35928021 -65945148 + MIR SINE MIR 94 151 -111 882 202 66 10 chr13 35928600 35928798 -65944371 - MER3 DNA MER1_type 0 209 1 312 179 95 0 chr13 35928863 35928947 -65944222 - L1MC4 LINE L1 -1891 5917 5826 2018 133 0 26 chr13 35929079 35929387 -65943782 - AluSx SINE Alu -12 300 1 444 311 63 30 chr13 35929745 35929891 -65943278 + L1M4 LINE L1 2661 2801 -3345 35 0 0 0 chr13 35929891 35929926 -65943243 + AT_rich Low_complexity Low_complexity 1 35 0 1633 171 10 24 chr13 35929920 35930212 -65942957 - AluJo SINE Alu -24 288 1 444 311 63 30 chr13 35930212 35930306 -65942863 + L1M4 LINE L1 3087 2939 -3207 410 138 0 12 chr13 35930370 35930450 -65942719 + MADE1 DNA Mariner 1 79 -1 1570 208 211 69 chr13 35930828 35930884 -65942285 - L1MC4 LINE L1 -151 7891 7844 2136 109 0 0 chr13 35930884 35931167 -65942002 - AluY SINE Alu -16 295 13 1570 208 211 69 chr13 35931167 35931948 -65941221 - L1MC4 LINE L1 -198 7844 6935 44 20 0 0 chr13 35931948 35931999 -65941170 + AT_rich Low_complexity Low_complexity 1 51 0 2441 59 0 0 chr13 35932079 35932369 -65940800 - AluY SINE Alu -20 291 2 909 363 50 21 chr13 35932986 35933747 -65939422 + L2 LINE L2 925 1707 -1607 267 295 47 54 chr13 35933894 35934023 -65939146 + L2 LINE L2 3133 3260 -12 487 161 0 21 chr13 35934298 35934391 -65938778 + THE1B LTR MaLR 1 91 -273 1565 97 0 0 chr13 35934558 35934754 -65938415 - AluSg SINE Alu -114 196 1 1075 152 184 8 chr13 35934876 35935132 -65938037 - L1MD1 LINE L1 -22 6220 5920 233 116 0 23 chr13 35935244 35935287 -65937882 + (TCTCCC)n Simple_repeat Simple_repeat 6 47 0 9068 115 87 7 chr13 35935306 35936952 -65936217 - LOR1b-int LTR ERV1 -6141 1979 203 1873 184 24 3 chr13 35936956 35937325 -65935844 - LOR1b-int LTR ERV1 -7743 377 1 2467 143 40 22 chr13 35937325 35937778 -65935391 - LOR1b LTR ERV1 0 461 1 780 218 28 38 chr13 35937820 35938031 -65935138 - MER20 DNA MER1_type -1 218 10 566 234 38 0 chr13 35938074 35938232 -65934937 - L1MEc LINE L1 -4666 1730 1567 909 247 101 25 chr13 35938246 35938809 -65934360 - L1MEc LINE L1 -4981 1224 619 270 298 0 0 chr13 35938840 35938924 -65934245 - L2 LINE L2 -407 2906 2823 * 492 227 0 9 chr13 35938918 35939028 -65934141 - L2 LINE L2 -1416 1898 1790 544 193 47 115 chr13 35939042 35939194 -65933975 - MER58C DNA MER1_type -2240 180 42 1998 166 0 0 chr13 35939194 35939496 -65933673 + AluSx SINE Alu 1 302 -10 544 193 47 115 chr13 35939496 35939535 -65933634 - MER58C DNA MER1_type -2378 42 2 492 247 127 67 chr13 35939586 35939853 -65933316 - L2 LINE L2 -1519 1795 1513 27 0 0 0 chr13 35939860 35939887 -65933282 + AT_rich Low_complexity Low_complexity 1 27 0 36 94 0 0 chr13 35940572 35940678 -65932491 + AT_rich Low_complexity Low_complexity 1 106 0 236 266 55 9 chr13 35940682 35940791 -65932378 - L1MD1 LINE L1 -236 5885 5772 199 407 37 19 chr13 35940972 35941080 -65932089 + L2 LINE L2 3151 3260 -12 21 36 0 0 chr13 35941129 35941157 -65932012 + AT_rich Low_complexity Low_complexity 1 28 0 390 294 131 31 chr13 35942339 35942689 -65930480 - L2 LINE L2 -1158 2156 1772 225 379 76 11 chr13 35943419 35943696 -65929473 - L2 LINE L2 -2390 924 630 856 138 83 22 chr13 35944224 35944405 -65928764 - LTR47A LTR ERVL 0 452 261 1311 173 9 35 chr13 35945870 35946210 -65926959 - MER31A LTR ERV1 -1 484 37 606 131 0 0 chr13 35946210 35946294 -65926875 + FLAM_C SINE Alu 37 120 -23 198 167 0 0 chr13 35946300 35946336 -65926833 + (CACG)n Simple_repeat Simple_repeat 3 38 0 253 0 0 0 chr13 35946398 35946428 -65926741 - MER67A LTR ERV1 -513 30 1 1512 201 92 127 chr13 35946448 35947393 -65925776 - L1MC5 LINE L1 -111 7850 6952 278 50 25 0 chr13 35947393 35947433 -65925736 + (TG)n Simple_repeat Simple_repeat 1 41 0 1512 201 92 127 chr13 35947433 35947818 -65925351 - L1MC5 LINE L1 -1009 6952 6555 3622 149 60 6 chr13 35948340 35949002 -65924167 - MER44D DNA MER2_type 0 705 8 387 0 0 0 chr13 35949007 35949050 -65924119 + (TG)n Simple_repeat Simple_repeat 2 44 0 2105 142 7 0 chr13 35949249 35949420 -65923749 - AluSx SINE Alu -8 304 129 2234 109 13 0 chr13 35949420 35949723 -65923446 - AluSq SINE Alu -6 307 1 2105 142 7 0 chr13 35949723 35949853 -65923316 - AluSx SINE Alu -183 129 1 440 274 155 23 chr13 35950388 35950607 -65922562 - MIR SINE MIR -7 255 8 22 35 0 0 chr13 35950897 35950926 -65922243 + AT_rich Low_complexity Low_complexity 1 29 0 291 54 0 0 chr13 35950926 35950963 -65922206 + (CA)n Simple_repeat Simple_repeat 2 38 0 1539 179 3 69 chr13 35952160 35952478 -65920691 - AluJo SINE Alu -15 297 1 186 350 33 0 chr13 35952571 35952631 -65920538 - MIR SINE MIR -193 69 8 2075 86 0 0 chr13 35952690 35952958 -65920211 - AluY SINE Alu -8 303 36 205 211 0 0 chr13 35953029 35953067 -65920102 + (TA)n Simple_repeat Simple_repeat 2 39 0 407 247 24 0 chr13 35953224 35953309 -65919860 + MIR SINE MIR 2 88 -174 1328 161 18 5 chr13 35953313 35953530 -65919639 - AluJo SINE Alu -8 304 85 2304 86 0 17 chr13 35953752 35954054 -65919115 + AluSq SINE Alu 1 297 -16 1252 163 303 57 chr13 35954242 35954697 -65918472 - MLT1F1 LTR MaLR 0 567 1 364 278 105 25 chr13 35954894 35955056 -65918113 - L2 LINE L2 -1292 2022 1848 2225 88 7 16 chr13 35955474 35955781 -65917388 + AluY SINE Alu 1 304 -7 1125 88 27 0 chr13 35955968 35956115 -65917054 + AluSq/x SINE Alu 1 151 -161 1212 269 83 44 chr13 35956116 35956574 -65916595 + MLT1E2 LTR MaLR 149 626 0 675 244 115 11 chr13 35956652 35956922 -65916247 - MER5C DNA MER1_type -26 298 1 1895 107 22 88 chr13 35957220 35957424 -65915745 - THE1B LTR MaLR 0 364 167 2060 109 7 23 chr13 35957424 35957726 -65915443 + AluSx SINE Alu 10 306 -6 1895 107 22 88 chr13 35957726 35957883 -65915286 - THE1B LTR MaLR -197 167 1 631 269 88 36 chr13 35958146 35958621 -65914548 - L1ME4a LINE L1 -15 6106 5607 198 71 0 0 chr13 35958777 35958805 -65914364 + (TG)n Simple_repeat Simple_repeat 2 29 0 2558 55 0 13 chr13 35958828 35959138 -65914031 - AluSg SINE Alu -4 306 1 3343 57 11 2 chr13 35959750 35960186 -65912983 + L1PA7 LINE L1 5715 6154 0 1747 180 6 6 chr13 35960391 35960702 -65912467 + AluJb SINE Alu 1 311 -1 2045 139 33 0 chr13 35961236 35961538 -65911631 - AluSx SINE Alu 0 312 1 900 134 0 35 chr13 35962052 35962194 -65910975 + FLAM_C SINE Alu 1 137 -6 232 159 0 0 chr13 35962204 35962248 -65910921 + MER77 LTR ERV1 278 321 -284 433 320 50 70 chr13 35962248 35962651 -65910518 + L1 LINE L1 9 403 -5488 1388 150 35 0 chr13 35962758 35962985 -65910184 - MER46A DNA MER2_type 0 236 2 2805 214 76 8 chr13 35962989 35963918 -65909251 + L1 LINE L1 2888 3880 -2090 * 7100 78 11 7 chr13 35963915 35964992 -65908177 + L1P LINE L1 4303 5383 -763 2938 235 43 25 chr13 35965102 35965226 -65907943 - L1ME4a LINE L1 -816 5330 5210 1950 138 27 7 chr13 35965226 35965523 -65907646 - AluSx SINE Alu -9 303 1 2938 235 43 25 chr13 35965523 35966496 -65906673 - L1ME4a LINE L1 -936 5210 4214 2324 95 117 22 chr13 35966499 35966908 -65906261 + LTR7 LTR ERV1 1 448 -2 1926 161 15 42 chr13 35966923 35967333 -65905836 - MSTB1 LTR MaLR -33 399 1 1499 210 47 24 chr13 35967335 35967637 -65905532 - L1ME4a LINE L1 -1922 4224 3931 2324 112 3 0 chr13 35967637 35967941 -65905228 - AluSp SINE Alu -8 305 1 1703 186 0 26 chr13 35967943 35968249 -65904920 - AluJo SINE Alu -14 298 1 1499 210 47 24 chr13 35968249 35968367 -65904802 - L1ME4a LINE L1 -2215 3931 3791 460 248 113 14 chr13 35969103 35969244 -65903925 + MER5A DNA MER1_type 35 189 0 3898 80 58 41 chr13 35969971 35970561 -65902608 - MER4A LTR ERV1 0 600 1 2458 60 3 0 chr13 35971642 35971943 -65901226 + AluY SINE Alu 1 302 -9 463 254 62 31 chr13 35972190 35972320 -65900849 - L2 LINE L2 0 3272 3139 375 298 43 0 chr13 35972438 35972532 -65900637 - L2 LINE L2 -8 3305 3208 204 40 0 0 chr13 35972875 35972900 -65900269 + (TTCCC)n Simple_repeat Simple_repeat 2 26 0 687 166 35 62 chr13 35972903 35973156 -65900013 - FLAM_A SINE Alu 0 250 2 434 189 72 36 chr13 35973161 35973272 -65899897 - L2 LINE L2 -2 3311 3197 661 332 33 26 chr13 35973287 35973558 -65899611 - L3 LINE CR1 -85 1492 1220 411 275 132 6 chr13 35973735 35973902 -65899267 - MIR SINE MIR -55 207 20 959 154 0 0 chr13 35973917 35974060 -65899109 - FLAM_C SINE Alu 0 143 1 197 95 0 48 chr13 35974319 35974361 -65898808 + (TTTTC)n Simple_repeat Simple_repeat 5 44 0 2496 142 26 19 chr13 35974675 35975104 -65898065 + MSTB1 LTR MaLR 1 432 0 634 243 16 57 chr13 35976585 35976832 -65896337 - L1MC4 LINE L1 -2 8040 7804 879 240 172 75 chr13 35978069 35978739 -65894430 - L1MC4 LINE L1 -214 7828 7077 441 12 107 155 chr13 35978739 35978794 -65894375 - MADE1 DNA Mariner 0 80 29 2563 51 0 0 chr13 35978794 35979089 -65894080 - AluY SINE Alu -16 295 1 441 12 107 155 chr13 35979089 35979117 -65894052 - MADE1 DNA Mariner -51 29 1 879 240 172 75 chr13 35979117 35979191 -65893978 - L1MC4 LINE L1 -965 7077 7012 1254 75 0 70 chr13 35979236 35979437 -65893732 - L1PB1 LINE L1 0 6151 5965 4843 85 27 11 chr13 35979437 35980187 -65892982 - L1PB1 LINE L1 -133 6734 5973 1145 148 46 60 chr13 35980189 35980406 -65892763 - AluSg/x SINE Alu -16 294 81 11661 199 78 19 chr13 35980406 35980766 -65892403 - L1PB1 LINE L1 -895 5967 5630 2579 65 0 0 chr13 35980766 35981072 -65892097 - AluY SINE Alu -5 306 1 11661 199 78 19 chr13 35981072 35981708 -65891461 - L1PB1 LINE L1 -1232 5630 5033 1938 156 0 0 chr13 35981708 35982016 -65891153 - AluSx SINE Alu 0 308 1 11661 199 78 19 chr13 35982016 35982941 -65890228 - L1PB1 LINE L1 -1829 5033 4164 185 0 40 0 chr13 35982941 35982966 -65890203 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 11661 199 78 19 chr13 35982966 35983850 -65889319 - L1PB1 LINE L1 -2698 4164 2993 2011 119 25 7 chr13 35983850 35984135 -65889034 - AluSx SINE Alu -22 290 1 1392 121 5 0 chr13 35984294 35984484 -65888685 + AluSp SINE Alu 115 305 -8 16784 114 106 6 chr13 35984484 35987175 -65885994 - L1PB1 LINE L1 -3904 2959 1 3469 224 86 91 chr13 35987182 35988850 -65884319 - L1MC4a LINE L1 -873 6935 5276 732 286 41 39 chr13 35988886 35988960 -65884209 - L1MC4a LINE L1 -904 5242 5170 1769 168 3 3 chr13 35988960 35989245 -65883924 - AluJb SINE Alu -27 285 1 732 286 41 39 chr13 35989245 35989677 -65883492 - L1MC4a LINE L1 -976 5170 4735 37274 98 10 9 chr13 35989694 35995836 -65877333 - L1PA6 LINE L1 -1 6153 11 2234 138 0 0 chr13 35995919 35996230 -65876939 - AluSx SINE Alu -1 311 1 1838 180 0 7 chr13 35996327 35996632 -65876537 - AluJb SINE Alu -8 304 2 552 194 15 179 chr13 35996812 35996870 -65876299 + MER5B DNA MER1_type 8 74 -104 911 144 0 8 chr13 35996870 35997002 -65876167 + FLAM_C SINE Alu 1 131 -2 552 194 15 179 chr13 35997002 35997139 -65876030 + MER5B DNA MER1_type 74 171 -7 1554 180 24 20 chr13 35997921 35998215 -65874954 - AluJo SINE Alu -17 295 1 291 175 0 0 chr13 35998232 35998289 -65874880 + (TATG)n Simple_repeat Simple_repeat 2 58 0 198 347 116 0 chr13 35998998 35999093 -65874076 + L3 LINE CR1 1078 1183 -394 1526 136 6 196 chr13 35999094 35999578 -65873591 - MER57A LTR ERV1 0 403 12 220 263 30 61 chr13 35999736 35999835 -65873334 + L3 LINE CR1 1401 1496 -81 2598 68 0 0 chr13 35999971 36000281 -65872888 + AluY SINE Alu 1 310 -1 660 319 22 0 chr13 36001262 36001444 -65871725 - MIR SINE MIR -16 246 61 272 207 86 159 chr13 36001642 36002038 -65871131 + MLT1K LTR MaLR 217 583 -5 10212 76 6 2 chr13 36002448 36004515 -65868654 - L1PA7 LINE L1 0 6154 4079 506 313 121 0 chr13 36004632 36004814 -65868355 + MIR SINE MIR 59 262 0 2361 73 0 3 chr13 36004997 36005298 -65867871 + AluY SINE Alu 1 300 -11 515 92 0 0 chr13 36005326 36005402 -65867767 - L1PA11 LINE L1 0 6174 6099 229 156 0 44 chr13 36005454 36005499 -65867670 - MER3 DNA MER1_type -155 54 12 1528 212 115 15 chr13 36005499 36005909 -65867260 - L1ME3 LINE L1 -146 6016 5564 348 296 91 8 chr13 36007011 36007143 -65866026 + MIR SINE MIR 40 182 -80 378 224 128 32 chr13 36007292 36007417 -65865752 - LTR67 LTR ERVL -7 550 414 1730 213 136 5 chr13 36007725 36008138 -65865031 - MLT1C LTR MaLR 0 467 1 1712 125 80 21 chr13 36008157 36008446 -65864723 - AluSx SINE Alu -6 306 1 50 31 0 0 chr13 36008572 36008636 -65864533 + AT_rich Low_complexity Low_complexity 1 64 0 363 245 117 42 chr13 36008685 36008836 -65864333 - MIR3 SINE MIR -21 187 22 1593 188 74 56 chr13 36010228 36010606 -65862563 - MLT1B LTR MaLR -5 385 1 233 284 49 12 chr13 36010640 36010721 -65862448 - MIR3 SINE MIR -20 188 105 2227 100 3 3 chr13 36010728 36011019 -65862150 - AluSx SINE Alu -21 291 1 307 299 95 54 chr13 36011455 36011506 -65861663 + L2 LINE L2 3117 3164 -108 3229 174 30 2 chr13 36011506 36012047 -65861122 - MER74A LTR ERVL -2 556 1 307 299 95 54 chr13 36012047 36012142 -65861027 + L2 LINE L2 3164 3269 -3 2336 111 0 0 chr13 36012290 36012588 -65860581 - AluSx SINE Alu -14 298 1 1349 119 44 9 chr13 36012636 36012862 -65860307 - L1MA5A LINE L1 0 6297 6064 1993 139 10 0 chr13 36013946 36014234 -65858935 - AluSx SINE Alu -20 292 2 2530 135 22 24 chr13 36014235 36014266 -65858903 - L1MC1 LINE L1 -479 5854 5824 2389 98 0 0 chr13 36014266 36014572 -65858597 - AluSg SINE Alu -4 306 1 2530 135 22 24 chr13 36014572 36014954 -65858215 - L1MC1 LINE L1 -509 5824 5442 688 300 46 29 chr13 36015545 36015895 -65857274 - L2 LINE L2 -601 2713 2358 1884 107 19 15 chr13 36016742 36017013 -65856156 + THE1B LTR MaLR 1 272 -92 432 0 0 0 chr13 36017030 36017078 -65856091 + (CA)n Simple_repeat Simple_repeat 2 49 0 219 36 0 0 chr13 36017881 36017909 -65855260 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2470 51 0 0 chr13 36018478 36018773 -65854396 + AluY SINE Alu 1 295 -16 1378 210 79 19 chr13 36020935 36021302 -65851867 + L1MC4 LINE L1 7653 8041 -1 2464 175 76 12 chr13 36021995 36022480 -65850689 + MER34 LTR ERV1 27 542 0 793 184 8 0 chr13 36022601 36022726 -65850443 - FLAM_C SINE Alu -6 127 2 1161 233 51 34 chr13 36023204 36023560 -65849609 + LTR16B LTR ERVL 3 364 -100 483 158 14 7 chr13 36023650 36023739 -65849430 - MER72 LTR ERV1 -42 881 586 1065 149 55 11 chr13 36024839 36025020 -65848149 + MER5A DNA MER1_type 1 189 0 1890 151 3 25 chr13 36025247 36025566 -65847603 - AluSx SINE Alu 0 312 1 327 269 123 36 chr13 36026532 36026751 -65846418 + LTR40c LTR ERVL 169 406 -59 2361 180 83 7 chr13 36026962 36027395 -65845774 + MER82 DNA MER2_type 188 653 0 1526 288 59 43 chr13 36027916 36028262 -65844907 - L1MEc LINE L1 -4973 1423 1084 2214 147 134 11 chr13 36028262 36028642 -65844527 + MSTA LTR MaLR 2 428 0 1526 288 59 43 chr13 36028642 36029313 -65843856 - L1MEc LINE L1 -5312 1084 390 2002 149 57 34 chr13 36029317 36029666 -65843503 + THE1B LTR MaLR 8 364 0 12517 91 10 8 chr13 36029666 36031242 -65841927 + THE1B-int LTR MaLR 1 1580 0 2161 132 47 47 chr13 36031242 36031606 -65841563 + THE1B LTR MaLR 1 364 0 638 299 44 57 chr13 36031625 36031943 -65841226 - L1MEc LINE L1 -6048 348 35 1750 135 58 0 chr13 36032178 36032438 -65840731 + AluSx SINE Alu 1 275 -37 201 178 44 0 chr13 36033034 36033079 -65840090 - L2 LINE L2 -107 3206 3160 272 330 102 0 chr13 36033170 36033258 -65839911 + MER5A DNA MER1_type 13 109 -80 425 157 0 0 chr13 36033430 36033500 -65839669 - MLT1D LTR MaLR -46 459 390 800 189 0 7 chr13 36033500 36033648 -65839521 - MLT2A2 LTR ERVL 0 453 307 1024 199 0 17 chr13 36033806 36033987 -65839182 - MER5B DNA MER1_type 0 178 1 399 21 0 0 chr13 36033994 36034042 -65839127 + (CA)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr13 36034549 36034578 -65838591 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr13 36035457 36035477 -65837692 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1883 172 0 10 chr13 36035792 36036106 -65837063 + AluJb SINE Alu 2 312 0 2430 74 0 13 chr13 36036876 36037188 -65835981 + AluY SINE Alu 1 308 -3 219 167 0 0 chr13 36038233 36038275 -65834894 + GA-rich Low_complexity Low_complexity 2 43 0 10447 166 33 46 chr13 36038654 36039009 -65834160 - L1PB4 LINE L1 0 6156 5798 2475 69 7 0 chr13 36039009 36039313 -65833856 - AluSq SINE Alu -7 306 1 10447 166 33 46 chr13 36039313 36039539 -65833630 - L1PB4 LINE L1 -358 5798 5570 2375 89 0 3 chr13 36039539 36039841 -65833328 - AluSx SINE Alu -2 310 10 10447 166 33 46 chr13 36039841 36040058 -65833111 - L1PB4 LINE L1 -586 5570 5352 2407 58 7 16 chr13 36040058 36040368 -65832801 - AluY SINE Alu -4 307 1 10447 166 33 46 chr13 36040368 36040858 -65832311 - L1PB4 LINE L1 -804 5352 4857 1644 66 0 0 chr13 36040858 36041055 -65832114 + L1PA7 LINE L1 5956 6152 -2 10447 166 33 46 chr13 36041055 36043021 -65830148 - L1PB4 LINE L1 -1299 4857 2975 34 65 0 0 chr13 36043088 36043150 -65830019 + AT_rich Low_complexity Low_complexity 1 62 0 1657 273 71 23 chr13 36043248 36043917 -65829252 - L1MC4a LINE L1 -747 5399 5221 562 209 72 43 chr13 36044870 36045009 -65828160 + MLT1F1 LTR MaLR 29 171 -396 295 198 35 48 chr13 36045434 36045569 -65827600 - LTR16A1 LTR ERVL 0 457 360 460 271 15 70 chr13 36046541 36046740 -65826429 + MER5A DNA MER1_type 1 188 -1 1683 182 10 7 chr13 36047700 36047997 -65825172 + AluJb SINE Alu 1 298 -14 1461 199 57 3 chr13 36048011 36048293 -65824876 + AluJo SINE Alu 6 302 -10 192 77 0 0 chr13 36048583 36048609 -65824560 + (TG)n Simple_repeat Simple_repeat 1 26 0 1773 203 39 107 chr13 36049478 36049575 -65823594 - MLT1D LTR MaLR 0 505 403 1963 141 0 4 chr13 36049575 36049852 -65823317 - AluSx SINE Alu -23 289 14 1773 203 39 107 chr13 36049852 36050295 -65822874 - MLT1D LTR MaLR -102 403 2 266 322 141 8 chr13 36051419 36051540 -65821629 - L2 LINE L2 0 3272 3136 24 0 0 0 chr13 36052607 36052631 -65820538 + AT_rich Low_complexity Low_complexity 1 24 0 389 132 0 0 chr13 36052869 36052922 -65820247 - MER63 DNA MER1_type -325 737 685 5894 168 12 28 chr13 36053195 36054075 -65819094 + L1PB1 LINE L1 4027 4919 -1232 2111 116 3 0 chr13 36054075 36054360 -65818809 + AluSq SINE Alu 1 286 -27 5894 168 12 28 chr13 36054360 36054880 -65818289 + L1PB1 LINE L1 4919 5445 -706 2582 39 0 19 chr13 36054880 36055188 -65817981 + L1PA5 LINE L1 5846 6147 -7 5894 168 12 28 chr13 36055188 36055921 -65817248 + L1PB1 LINE L1 5445 6128 -23 1200 156 10 0 chr13 36055921 36056113 -65817056 - Tigger1 DNA MER2_type -2222 196 3 485 306 50 0 chr13 36056615 36056774 -65816395 + MIR SINE MIR 33 199 -63 291 236 90 0 chr13 36056774 36056863 -65816306 - MER5C DNA MER1_type -1 323 227 513 204 19 0 chr13 36056887 36056995 -65816174 - MER5C DNA MER1_type -212 112 3 287 242 0 0 chr13 36057002 36057068 -65816101 + MIR SINE MIR 196 261 -1 1218 207 56 77 chr13 36057128 36057771 -65815398 - MER76 LTR ERV 0 688 3 1347 13 0 0 chr13 36057842 36057991 -65815178 - AluYa5 SINE Alu -15 296 148 1875 150 0 52 chr13 36058415 36058741 -65814428 - AluSx SINE Alu 0 312 4 1724 204 19 25 chr13 36059030 36059397 -65813772 - MLT1A1 LTR MaLR 0 365 1 2244 90 3 40 chr13 36059426 36059747 -65813422 + AluY SINE Alu 2 310 -1 266 26 53 0 chr13 36059753 36059791 -65813378 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 3543 138 41 2 chr13 36060337 36060901 -65812268 + Tigger1 DNA MER2_type 171 756 -1662 1816 137 16 36 chr13 36060876 36061182 -65811987 + Tigger1 DNA MER2_type 2119 2418 0 * 690 255 77 0 chr13 36061879 36062075 -65811094 + LTR16C LTR ERVL 280 490 -1 692 193 104 35 chr13 36063635 36063837 -65809332 + MIR SINE MIR 20 235 -27 234 242 100 58 chr13 36063933 36063963 -65809206 - L1M3 LINE L1 -252 5928 5899 622 254 53 25 chr13 36063963 36064207 -65808962 - L1MC4a LINE L1 -1916 5892 5642 245 176 39 0 chr13 36064212 36064263 -65808906 - L1MC4a LINE L1 -526 5595 5543 2373 97 0 0 chr13 36064469 36064769 -65808400 + AluSg SINE Alu 1 300 -10 23 0 0 0 chr13 36065392 36065415 -65807754 + AT_rich Low_complexity Low_complexity 1 23 0 203 211 70 56 chr13 36065658 36065729 -65807440 + MIR SINE MIR 12 83 -179 285 252 231 28 chr13 36065968 36066111 -65807058 - MIR SINE MIR -13 249 78 431 189 28 47 chr13 36067371 36067477 -65805692 + MIR SINE MIR 159 262 0 1705 96 137 30 chr13 36067496 36068006 -65805163 - MER51A LTR ERV1 0 657 1 228 278 130 10 chr13 36068037 36068188 -65804981 - MIR SINE MIR -3 259 23 630 155 113 35 chr13 36068413 36068555 -65804614 + MER5B DNA MER1_type 1 153 -25 460 289 89 0 chr13 36068591 36068726 -65804443 - MER5B DNA MER1_type -31 147 1 2180 112 0 0 chr13 36068770 36069064 -65804105 - AluSx SINE Alu -18 294 1 2269 123 0 3 chr13 36069205 36069513 -65803656 + AluSx SINE Alu 1 307 -5 344 314 121 0 chr13 36070087 36070227 -65802942 + MIR SINE MIR 70 226 -36 650 157 0 0 chr13 36071542 36071644 -65801525 - MER45A DNA AcHobo 0 178 77 1532 145 4 0 chr13 36072192 36072420 -65800749 + Tigger3(Golem) DNA MER2_type 2801 3029 0 1643 190 31 0 chr13 36072794 36073083 -65800086 - AluJo SINE Alu -14 298 1 249 83 0 0 chr13 36073658 36073694 -65799475 + (TC)n Simple_repeat Simple_repeat 1 36 0 816 208 35 98 chr13 36075722 36075977 -65797192 + MIR SINE MIR 23 261 -1 2342 100 0 0 chr13 36076643 36076942 -65796227 - AluSg SINE Alu -11 299 1 326 301 11 11 chr13 36077359 36077452 -65795717 - LTR16C LTR ERVL -134 357 265 300 216 372 74 chr13 36077830 36078203 -65794966 - L2 LINE L2 -1044 2270 2010 2675 121 8 3 chr13 36078203 36078574 -65794595 + THE1C LTR MaLR 1 373 -2 300 216 372 74 chr13 36078574 36078635 -65794534 - L2 LINE L2 -1304 2010 1706 380 250 196 20 chr13 36079072 36079220 -65793949 - MIR SINE MIR -63 199 26 1919 98 39 0 chr13 36079280 36079536 -65793633 - L1PA16 LINE L1 0 6166 5901 2952 93 3 3 chr13 36079908 36080272 -65792897 - THE1B LTR MaLR 0 364 1 1273 284 98 5 chr13 36080682 36081070 -65792099 - LTR16C LTR ERVL 0 491 68 663 187 39 39 chr13 36081649 36081804 -65791365 + MER3 DNA MER1_type 52 206 -3 833 216 129 87 chr13 36082124 36082433 -65790736 + LTR41 LTR ERVL 372 701 -72 2373 94 0 3 chr13 36082433 36082742 -65790427 - AluSg SINE Alu -2 308 1 833 216 129 87 chr13 36082742 36082812 -65790357 + LTR41 LTR ERVL 701 767 -6 2222 120 0 0 chr13 36082929 36083229 -65789940 + AluY SINE Alu 1 300 -11 522 221 53 15 chr13 36083890 36084021 -65789148 - MIR SINE MIR -126 136 1 1460 155 136 124 chr13 36084087 36084506 -65788663 - MSTA LTR MaLR -4 424 1 295 302 141 13 chr13 36085496 36085645 -65787524 - MIR SINE MIR -8 254 87 374 235 21 18 chr13 36086122 36086237 -65786932 + MLT1L LTR MaLR 478 615 0 21 0 0 0 chr13 36088202 36088223 -65784946 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 36088496 36088527 -65784642 + AT_rich Low_complexity Low_complexity 1 31 0 571 229 176 16 chr13 36090144 36090332 -65782837 + MIR SINE MIR 45 262 0 2308 237 24 4 chr13 36090456 36091009 -65782160 - MER90 LTR ERV1 -11 564 1 279 306 107 0 chr13 36091123 36091244 -65781925 - L2 LINE L2 0 3313 3180 1728 187 31 24 chr13 36092300 36092759 -65780410 + MLT2B1 LTR ERVL 1 510 -5 389 323 118 0 chr13 36093862 36094091 -65779078 - MIR SINE MIR -1 261 6 182 304 0 0 chr13 36095279 36095335 -65777834 + MIR SINE MIR 137 192 -70 218 325 79 16 chr13 36095643 36095769 -65777400 - L2 LINE L2 -10 3303 3170 285 317 182 14 chr13 36095818 36096181 -65776988 + L2 LINE L2 1894 2317 -997 474 333 143 16 chr13 36096338 36096701 -65776468 + LTR67 LTR ERVL 147 555 -2 5620 156 28 9 chr13 36096798 36097744 -65775425 - L1MC1 LINE L1 0 6333 5371 33 43 0 0 chr13 36098399 36098446 -65774723 + AT_rich Low_complexity Low_complexity 1 47 0 7372 57 16 2 chr13 36098452 36099642 -65773527 - L1PA7 LINE L1 -11 6143 4948 228 330 50 82 chr13 36101102 36101384 -65771785 + L2 LINE L2 2335 2607 -707 781 191 54 6 chr13 36101548 36101716 -65771453 - MER5B DNA MER1_type 0 178 3 214 279 16 0 chr13 36101772 36101833 -65771336 - MER5B DNA MER1_type -6 172 111 2000 228 135 26 chr13 36101835 36102370 -65770799 + MLT1E LTR MaLR 1 593 0 1926 168 7 0 chr13 36102378 36102687 -65770482 + AluJb SINE Alu 1 311 -1 405 339 67 0 chr13 36103262 36103427 -65769742 + L3 LINE CR1 1400 1575 -2 1285 234 83 41 chr13 36104128 36104491 -65768678 - MER21B LTR ERV1 -202 661 284 842 203 9 65 chr13 36104500 36104717 -65768452 - MLT1C LTR MaLR -262 205 1 245 207 52 0 chr13 36104927 36104985 -65768184 - MIR3 SINE MIR -21 187 127 1557 188 3 13 chr13 36105937 36106246 -65766923 - AluJo SINE Alu -6 306 1 1264 205 88 22 chr13 36107446 36107763 -65765406 + MER46C DNA MER2_type 1 338 0 350 246 85 15 chr13 36108933 36109063 -65764106 - L1ME4a LINE L1 -22 6099 5961 366 162 0 0 chr13 36109989 36110063 -65763106 + (CA)n Simple_repeat Simple_repeat 1 74 0 310 206 40 8 chr13 36110063 36110189 -65762980 + (TA)n Simple_repeat Simple_repeat 1 130 0 2181 118 40 58 chr13 36111216 36111592 -65761577 - L1MB8 LINE L1 -17 6161 5780 2599 124 3 6 chr13 36111592 36111948 -65761221 - THE1A LTR MaLR 0 355 1 12448 100 2 1 chr13 36111948 36113525 -65759644 - THE1A-int LTR MaLR 0 1580 1 2558 105 17 8 chr13 36113525 36113877 -65759292 - THE1A LTR MaLR 0 355 1 2181 118 40 58 chr13 36113877 36113897 -65759272 - L1MB8 LINE L1 -395 5783 5770 5843 150 32 20 chr13 36113948 36115917 -65757252 - L1MA9 LINE L1 0 6312 4316 * 43380 36 22 1 chr13 36115912 36121934 -65751235 - L1PA2 LINE L1 -5 6150 2 1536 131 8 4 chr13 36121935 36122187 -65750982 - L1MA9 LINE L1 -1819 4327 4075 849 212 11 8 chr13 36122190 36122390 -65750779 - L1MB8 LINE L1 -402 5754 5553 1927 212 113 53 chr13 36122811 36123335 -65749834 + MLT1F1 LTR MaLR 13 567 0 312 158 0 0 chr13 36123360 36123417 -65749752 + (TGG)n Simple_repeat Simple_repeat 3 59 0 2378 144 9 0 chr13 36123932 36124266 -65748903 + MER1B DNA MER1_type 1 337 0 2173 95 0 0 chr13 36124473 36124778 -65748391 - L1P LINE L1 -2163 3983 3679 5082 53 13 0 chr13 36124780 36125378 -65747791 + L1PA7 LINE L1 5547 6152 -2 1162 215 107 15 chr13 36125690 36125960 -65747209 + MLT1E LTR MaLR 257 551 -42 2748 145 24 9 chr13 36125982 36126402 -65746767 - MSTB LTR MaLR 0 426 1 225 186 23 0 chr13 36126953 36126996 -65746173 + MER53 DNA DNA 6 49 -140 * 236 143 0 0 chr13 36126994 36127029 -65746140 - U2 snRNA snRNA -153 35 1 447 90 15 0 chr13 36127030 36127097 -65746072 - MER53 DNA DNA -21 168 101 186 43 0 0 chr13 36128188 36128211 -65744958 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2140 111 9 19 chr13 36129775 36129897 -65743272 + AluSp SINE Alu 1 123 -190 186 43 0 0 chr13 36129897 36129920 -65743249 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2140 111 9 19 chr13 36129920 36130113 -65743056 + AluSp SINE Alu 123 313 0 20031 151 18 15 chr13 36130574 36136299 -65736870 + L1PA11 LINE L1 756 6489 0 717 140 20 20 chr13 36137253 36137403 -65735766 - L1M1 LINE L1 -7397 168 19 266 125 0 0 chr13 36137461 36137501 -65735668 + L1P LINE L1 3821 3860 -2286 * 347 299 36 52 chr13 36137497 36137885 -65735284 - L1ME LINE L1 -4994 1076 695 393 141 13 13 chr13 36137980 36138058 -65735111 - L1MC3 LINE L1 -8 7777 7700 472 169 0 0 chr13 36138513 36138596 -65734573 - L1MC3 LINE L1 -79 7706 7624 1179 152 24 0 chr13 36138597 36138808 -65734361 - Tigger1 DNA MER2_type -1 2417 2202 846 203 0 6 chr13 36138797 36138955 -65734214 - Tigger1 DNA MER2_type -2261 157 1 * 1111 204 61 0 chr13 36138955 36139219 -65733950 - L1MC3 LINE L1 -165 7620 7341 189 196 0 0 chr13 36139256 36139307 -65733862 + CT-rich Low_complexity Low_complexity 1 51 0 627 58 23 0 chr13 36140470 36140557 -65732612 - LOR1-int LTR ERV1 -4718 3402 3314 903 154 14 29 chr13 36140557 36140765 -65732404 + L1MA7 LINE L1 6086 6290 -1 195 290 32 32 chr13 36141432 36141494 -65731675 + L2 LINE L2 3251 3312 -1 378 306 45 25 chr13 36142246 36142403 -65730766 + MER5A DNA MER1_type 2 161 -28 2387 185 97 62 chr13 36142524 36143156 -65730013 + MLT1E1 LTR MaLR 1 654 0 986 262 170 31 chr13 36143252 36143763 -65729406 + Charlie2b DNA MER1_type 27 608 -2254 234 215 0 31 chr13 36143884 36143949 -65729220 + Charlie2b DNA MER1_type 615 677 -2105 1668 229 123 13 chr13 36144009 36144194 -65728975 + Charlie2a DNA MER1_type 1479 1642 -1220 2342 101 0 3 chr13 36144194 36144492 -65728677 + AluSq SINE Alu 1 297 -16 1668 229 123 13 chr13 36144492 36144923 -65728246 + Charlie2a DNA MER1_type 1642 2163 -699 687 269 32 15 chr13 36144961 36145299 -65727870 + Charlie2a DNA MER1_type 2519 2862 0 364 310 98 12 chr13 36145403 36145648 -65727521 - MLT1I LTR MaLR -143 266 1 235 294 0 15 chr13 36146568 36146636 -65726533 + MIR SINE MIR 194 260 -2 1083 146 47 13 chr13 36146749 36146982 -65726187 - L1MA8 LINE L1 -3 6288 6048 13014 90 14 1 chr13 36148411 36151040 -65722129 - L1PA7 LINE L1 -5 6149 3493 256 169 42 0 chr13 36151152 36151223 -65721946 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 1165 214 18 0 chr13 36151290 36151510 -65721659 + MIR SINE MIR 7 230 -32 424 271 173 22 chr13 36151536 36151812 -65721357 - L2 LINE L2 -211 3061 2750 189 0 0 0 chr13 36152025 36152046 -65721123 + (GA)n Simple_repeat Simple_repeat 2 22 0 1390 217 57 3 chr13 36152046 36152382 -65720787 - MLT2D LTR ERVL -60 354 1 318 324 70 22 chr13 36152382 36152567 -65720602 - L2 LINE L2 -687 2627 2434 210 252 25 8 chr13 36152603 36152680 -65720489 + GA-rich Low_complexity Low_complexity 1 78 0 666 168 0 0 chr13 36152998 36153117 -65720052 - MLT2D LTR ERVL -295 119 1 2252 106 0 3 chr13 36153308 36153609 -65719560 - AluSc SINE Alu -9 300 1 23 0 0 0 chr13 36154177 36154200 -65718969 + AT_rich Low_complexity Low_complexity 1 23 0 294 87 0 0 chr13 36154524 36154570 -65718599 + (GA)n Simple_repeat Simple_repeat 1 46 0 841 215 191 57 chr13 36155358 36155977 -65717192 - LTR50 LTR ERVL -1 794 1 1514 217 92 74 chr13 36156195 36156752 -65716417 + MLT1F1 LTR MaLR 1 567 0 204 40 0 0 chr13 36157021 36157046 -65716123 + (CAT)n Simple_repeat Simple_repeat 2 26 0 2444 49 0 13 chr13 36158744 36159048 -65714121 - AluY SINE Alu -11 300 1 2182 122 7 0 chr13 36159672 36159968 -65713201 - AluSx SINE Alu -14 298 1 2468 118 60 0 chr13 36160714 36161112 -65712057 - L1MA2 LINE L1 0 6304 5883 301 309 54 60 chr13 36161207 36161521 -65711648 + MLT1I LTR MaLR 34 345 -64 5789 56 1 0 chr13 36161533 36162246 -65710923 - L1PA6 LINE L1 -13 6141 5428 5806 57 0 0 chr13 36162251 36162972 -65710197 - L1PA5 LINE L1 -6 6148 5428 4073 77 0 0 chr13 36162977 36163507 -65709662 - L1PA5 LINE L1 -6 6148 5619 35944 80 17 10 chr13 36163607 36168907 -65704262 - L1PA5 LINE L1 -795 5351 11 319 186 43 0 chr13 36168920 36168990 -65704179 + MLT1I LTR MaLR 331 403 -6 30 0 0 0 chr13 36169065 36169095 -65704074 + AT_rich Low_complexity Low_complexity 1 30 0 1132 148 59 13 chr13 36169096 36169333 -65703836 - L1MB3 LINE L1 -1 6182 5935 3074 169 12 20 chr13 36169400 36170045 -65703124 - L1MB3 LINE L1 -258 5922 5283 791 247 0 6 chr13 36170046 36170224 -65702945 + MER58A DNA MER1_type 42 218 -6 25698 27 1 4 chr13 36170418 36174284 -65698885 + L1PA3 LINE L1 2287 6155 0 820 206 114 26 chr13 36174389 36174617 -65698552 - MIR SINE MIR -2 260 13 183 350 51 29 chr13 36174652 36174789 -65698380 - L2 LINE L2 -412 2902 2763 2335 110 0 3 chr13 36175471 36175780 -65697389 + AluSx SINE Alu 1 308 -4 957 99 0 0 chr13 36175862 36175983 -65697186 - AluSq/x SINE Alu -192 121 1 231 61 0 0 chr13 36176212 36176245 -65696924 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1892 130 22 4 chr13 36176248 36176525 -65696644 - AluSx SINE Alu -30 282 1 1955 76 0 0 chr13 36176528 36176778 -65696391 - L1PA8 LINE L1 -6 6166 5917 2897 216 15 10 chr13 36176778 36177362 -65695807 + MER82 DNA MER2_type 67 653 0 399 272 10 10 chr13 36179337 36179440 -65693729 - MIR SINE MIR -1 261 159 826 234 276 19 chr13 36179440 36179871 -65693298 + MLT1F LTR MaLR 1 542 0 195 294 111 48 chr13 36179875 36180001 -65693168 - MIR SINE MIR -103 159 26 195 206 48 48 chr13 36180703 36180766 -65692403 - MIR SINE MIR -63 145 83 681 230 112 25 chr13 36180777 36180973 -65692196 - MIR SINE MIR -14 248 36 1938 183 74 69 chr13 36181576 36181612 -65691557 - MLT2B3 LTR ERVL 0 554 520 438 20 0 0 chr13 36181612 36181663 -65691506 + (TG)n Simple_repeat Simple_repeat 1 51 0 1938 183 74 69 chr13 36181663 36182177 -65690992 - MLT2B3 LTR ERVL -34 520 1 181 356 14 0 chr13 36182238 36182311 -65690858 + MIR SINE MIR 2 75 -187 345 247 0 24 chr13 36182868 36182953 -65690216 - MIR SINE MIR -11 251 169 663 189 169 0 chr13 36182969 36183117 -65690052 + MER5A DNA MER1_type 10 182 -7 262 137 0 20 chr13 36183152 36183203 -65689966 - MIR SINE MIR -118 144 95 291 114 0 0 chr13 36183636 36183680 -65689489 + (CA)n Simple_repeat Simple_repeat 2 45 0 421 186 289 57 chr13 36184315 36184411 -65688758 + MIR SINE MIR 9 81 -181 635 78 0 0 chr13 36184411 36184488 -65688681 + MADE1 DNA Mariner 1 77 -3 421 186 289 57 chr13 36184488 36184585 -65688584 + MIR SINE MIR 81 247 -15 401 234 229 27 chr13 36184686 36184874 -65688295 + MER46C DNA MER2_type 1 226 -112 210 71 0 0 chr13 36185231 36185259 -65687910 + (T)n Simple_repeat Simple_repeat 1 28 0 283 269 86 21 chr13 36185262 36185496 -65687673 - L1MC5 LINE L1 -429 7532 7284 * 45269 39 0 3 chr13 36185477 36191647 -65681522 - L1PA3 LINE L1 0 6155 1 416 272 73 47 chr13 36191657 36191848 -65681321 + L2 LINE L2 3118 3313 0 2350 119 41 36 chr13 36192969 36193331 -65679838 - THE1B LTR MaLR 0 364 1 1485 154 37 197 chr13 36193969 36194494 -65678675 - MER61D LTR ERV1 0 501 1 2116 127 3 0 chr13 36196589 36196888 -65676281 - AluSx SINE Alu -12 300 1 401 313 67 7 chr13 36197757 36197907 -65675262 + MIR SINE MIR 26 184 -78 1340 267 70 25 chr13 36198450 36198933 -65674236 + MLT1D LTR MaLR 1 505 0 305 125 18 0 chr13 36200207 36200263 -65672906 + CT-rich Low_complexity Low_complexity 2 58 0 885 224 64 43 chr13 36200591 36200872 -65672297 - MLT1F LTR MaLR 0 542 278 8283 234 39 13 chr13 36200872 36201458 -65671711 - ERVL LTR ERVL -1544 4220 3650 450 0 0 0 chr13 36201458 36201508 -65671661 + (TG)n Simple_repeat Simple_repeat 1 50 0 8283 234 39 13 chr13 36201508 36203498 -65669671 - ERVL LTR ERVL -2114 3650 1553 559 198 35 93 chr13 36203503 36203675 -65669494 + MLT2C1 LTR ERVL 236 397 0 254 281 133 8 chr13 36203826 36203954 -65669215 - MLT1L LTR MaLR -65 550 407 270 221 63 63 chr13 36204129 36204256 -65668913 - MLT1J LTR MaLR -362 149 23 622 308 73 26 chr13 36206817 36207119 -65666050 + MLT1J2 LTR MaLR 3 318 -132 591 323 128 43 chr13 36207219 36207352 -65665817 - L2 LINE L2 -902 2412 2292 2119 116 3 0 chr13 36207352 36207636 -65665533 + AluSq SINE Alu 7 291 -22 591 323 128 43 chr13 36207636 36208040 -65665129 - L2 LINE L2 -1022 2292 1829 4300 134 23 0 chr13 36208051 36208698 -65664471 + L1PA16 LINE L1 5505 6166 0 4078 173 25 82 chr13 36208698 36208752 -65664417 + L1MD2 LINE L1 5388 5444 -915 2520 72 0 0 chr13 36208752 36209056 -65664113 + AluY SINE Alu 1 304 -7 4078 173 25 82 chr13 36209056 36209559 -65663610 + L1MD2 LINE L1 5444 5862 -497 306 73 0 0 chr13 36209559 36209600 -65663569 + (CA)n Simple_repeat Simple_repeat 2 42 0 4078 173 25 82 chr13 36209600 36210072 -65663097 + L1MD2 LINE L1 5862 6359 0 296 261 82 137 chr13 36210092 36210567 -65662602 - L2 LINE L2 -1548 1766 1318 699 151 145 13 chr13 36210579 36210731 -65662438 + MLT1D LTR MaLR 26 197 -308 1899 169 28 108 chr13 36210748 36210787 -65662382 - MSTB LTR MaLR 0 426 385 1360 39 0 0 chr13 36210787 36210940 -65662229 + L1PA3 LINE L1 6001 6153 -2 186 43 0 0 chr13 36210947 36210970 -65662199 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1899 169 28 108 chr13 36210970 36211200 -65661969 - MSTB LTR MaLR -47 379 198 4631 44 2 0 chr13 36211200 36211724 -65661445 - L1PA7 LINE L1 -13 6141 5617 1899 169 28 108 chr13 36211724 36211908 -65661261 - MSTB LTR MaLR -228 198 1 1131 222 21 12 chr13 36211931 36212174 -65660995 + MLT1D LTR MaLR 261 505 0 348 43 0 0 chr13 36212342 36212388 -65660781 + (CA)n Simple_repeat Simple_repeat 1 46 0 244 204 20 0 chr13 36213105 36213154 -65660015 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 22 0 0 0 chr13 36213206 36213228 -65659941 + AT_rich Low_complexity Low_complexity 1 22 0 301 352 75 73 chr13 36213703 36214155 -65659014 + L2 LINE L2 2817 3269 -3 229 219 0 0 chr13 36214867 36214908 -65658261 + MER5A DNA MER1_type 44 84 -105 257 250 26 26 chr13 36216380 36216456 -65656713 + MIR SINE MIR 46 121 -141 733 232 86 76 chr13 36216457 36216847 -65656322 + MLT1J LTR MaLR 19 461 -50 236 298 48 12 chr13 36216900 36216984 -65656185 + MIR SINE MIR 120 206 -56 589 129 14 10 chr13 36217177 36217280 -65655889 - L1P5 LINE L1 -443 5711 5600 5867 65 1 1 chr13 36217290 36217984 -65655185 - L1PA7 LINE L1 -16 6138 5445 2208 72 52 0 chr13 36217984 36218335 -65654834 + L1PA7 LINE L1 5080 5444 -710 * 3632 147 0 9 chr13 36218331 36219241 -65653928 - L1P5 LINE L1 -550 5615 4716 3514 107 15 0 chr13 36219241 36219709 -65653460 + L1PA15 LINE L1 5687 6161 -4 650 251 105 38 chr13 36219714 36219953 -65653216 + MIR SINE MIR 8 262 0 2931 223 94 33 chr13 36220150 36220212 -65652957 + HsTC2 DNA Tc2 16 73 -1825 4938 57 34 7 chr13 36220212 36220825 -65652344 + L1PA8 LINE L1 5536 6165 -7 2931 223 94 33 chr13 36220825 36221645 -65651524 + HsTC2 DNA Tc2 73 952 -946 336 186 35 12 chr13 36221693 36221779 -65651390 - L1 LINE L1 -996 5150 5063 997 159 29 12 chr13 36222107 36222277 -65650892 + THE1C LTR MaLR 1 173 -202 401 243 57 29 chr13 36222288 36222428 -65650741 - L1MC/D LINE L1 -2101 5707 5564 413 270 44 82 chr13 36222461 36223019 -65650150 - L1MC/D LINE L1 -979 5167 4537 346 293 286 0 chr13 36223044 36223184 -65649985 + MER5A DNA MER1_type 4 183 -6 487 340 79 22 chr13 36223507 36223822 -65649347 + L2 LINE L2 1638 1970 -1344 415 341 107 46 chr13 36223831 36224512 -65648657 + L2 LINE L2 2538 3272 0 235 336 35 35 chr13 36224777 36224893 -65648276 + L2 LINE L2 3197 3312 -1 1500 293 58 12 chr13 36226231 36226651 -65646518 + LTR33 LTR ERVL 1 449 -72 2582 103 28 14 chr13 36226651 36227010 -65646159 + THE1B LTR MaLR 1 364 0 1500 293 58 12 chr13 36227010 36227087 -65646082 + LTR33 LTR ERVL 449 521 0 181 378 27 27 chr13 36227257 36227368 -65645801 + L2 LINE L2 3202 3312 -1 340 248 86 9 chr13 36227981 36228086 -65645083 - L2 LINE L2 -2 3311 3199 186 303 45 73 chr13 36228300 36228478 -65644691 - L2 LINE L2 -167 3105 2933 310 299 39 16 chr13 36228961 36229088 -65644081 - L1ME LINE L1 -470 5651 5522 2395 90 0 0 chr13 36229311 36229610 -65643559 - AluY SINE Alu -12 299 1 425 268 107 48 chr13 36229861 36230352 -65642817 - L2 LINE L2 -110 3203 2676 380 260 203 53 chr13 36231602 36231829 -65641340 + L2 LINE L2 3019 3279 -34 191 200 0 0 chr13 36231804 36231834 -65641335 + MIR SINE MIR 210 239 -23 * 221 311 78 0 chr13 36232684 36232774 -65640395 + L2 LINE L2 2986 3082 -190 16547 33 3 1 chr13 36232824 36235668 -65637501 - L1PA4 LINE L1 -2 6153 3307 231 259 0 17 chr13 36236040 36236098 -65637071 + L2 LINE L2 3215 3271 -1 390 334 91 49 chr13 36236504 36236890 -65636279 - L2 LINE L2 0 3272 2871 316 309 224 40 chr13 36237004 36237681 -65635488 - L2 LINE L2 -623 2691 1890 428 275 116 60 chr13 36238309 36238542 -65634627 - MIR SINE MIR -16 246 1 264 274 16 0 chr13 36238678 36238740 -65634429 + L3 LINE CR1 1513 1575 -2 2563 136 22 62 chr13 36240088 36240467 -65632702 - L1PB4 LINE L1 -13 6143 5787 2301 117 0 3 chr13 36240467 36240774 -65632395 - AluSx SINE Alu -6 306 1 2563 136 22 62 chr13 36240774 36240893 -65632276 - L1PB4 LINE L1 -369 5787 5665 245 125 0 0 chr13 36240897 36240937 -65632232 - MLT2A1 LTR ERVL -8 436 397 240 35 0 0 chr13 36240958 36240987 -65632182 + (TATG)n Simple_repeat Simple_repeat 3 31 0 1698 61 18 0 chr13 36240992 36241221 -65631948 - MLT2A1 LTR ERVL -211 233 1 2101 103 43 6 chr13 36241221 36241570 -65631599 - L1PB4 LINE L1 -487 5669 5308 4330 90 21 0 chr13 36242894 36243503 -65629666 + L1PA13 LINE L1 5538 6159 -4 465 273 53 20 chr13 36243537 36243687 -65629482 + MLT1E LTR MaLR 1 155 -438 1310 208 23 8 chr13 36243688 36243953 -65629216 + MLT1E LTR MaLR 319 587 -6 274 274 137 43 chr13 36244183 36244300 -65628869 - L2 LINE L2 -21 3292 3165 180 0 0 0 chr13 36245247 36245267 -65627902 + (TG)n Simple_repeat Simple_repeat 1 20 0 325 186 12 12 chr13 36245267 36245353 -65627816 + GA-rich Low_complexity Low_complexity 2 87 0 279 0 0 0 chr13 36245360 36245391 -65627778 + (TG)n Simple_repeat Simple_repeat 1 31 0 3049 136 40 11 chr13 36246397 36246925 -65626244 - L1PA16 LINE L1 -5 6161 5619 195 309 79 79 chr13 36246927 36247066 -65626103 - L2 LINE L2 -8 3264 3126 256 325 116 37 chr13 36247354 36247622 -65625547 - L2 LINE L2 -555 2759 2471 1401 269 86 14 chr13 36248398 36248982 -65624187 - L1MC4a LINE L1 -1929 5879 5254 444 113 14 0 chr13 36249478 36249549 -65623620 + L1MA9 LINE L1 5419 5490 -801 638 81 0 0 chr13 36249549 36249635 -65623534 + L1PA15 LINE L1 5562 5647 -519 1148 92 6 0 chr13 36249636 36249799 -65623370 + L1PA15 LINE L1 5851 6014 -151 2628 128 32 44 chr13 36249799 36250299 -65622870 + L1MA9 LINE L1 5819 6312 0 319 191 146 0 chr13 36250586 36250675 -65622494 - MER46C DNA MER2_type -225 113 12 602 338 140 25 chr13 36251293 36251965 -65621204 - L2 LINE L2 -434 2880 2132 21 0 0 0 chr13 36252004 36252025 -65621144 + AT_rich Low_complexity Low_complexity 1 21 0 248 389 103 15 chr13 36252559 36252762 -65620407 + L2 LINE L2 2839 3059 -254 416 280 66 28 chr13 36252920 36253102 -65620067 - MIR SINE MIR -56 206 18 542 183 69 104 chr13 36254255 36254457 -65618712 + L1ME2 LINE L1 5968 6162 -2 1456 178 94 0 chr13 36254626 36254912 -65618257 + MLT1A1 LTR MaLR 1 313 -52 242 289 39 53 chr13 36255026 36255234 -65617935 - L1MCc LINE L1 -6194 229 25 26 50 0 0 chr13 36255239 36255279 -65617890 + AT_rich Low_complexity Low_complexity 1 40 0 216 283 81 46 chr13 36255476 36255563 -65617606 - MIR SINE MIR -57 151 58 180 111 0 0 chr13 36255577 36255604 -65617565 + (T)n Simple_repeat Simple_repeat 1 27 0 2976 171 82 16 chr13 36255604 36256295 -65616874 - L1MB4 LINE L1 0 6180 5444 544 299 30 0 chr13 36256628 36256792 -65616377 + MIR SINE MIR 79 247 -15 21 36 0 0 chr13 36256836 36256864 -65616305 + AT_rich Low_complexity Low_complexity 1 28 0 353 310 53 31 chr13 36257653 36257879 -65615290 - LTR33 LTR ERVL -236 285 55 218 244 199 23 chr13 36257973 36258104 -65615065 + L2 LINE L2 1597 1750 -1564 384 302 224 0 chr13 36258120 36258366 -65614803 - L2 LINE L2 -228 3044 2750 664 270 76 81 chr13 36258377 36258900 -65614269 - MLT1H1 LTR MaLR -12 543 67 1156 202 113 58 chr13 36258900 36259246 -65613923 - MLT1A1 LTR MaLR 0 365 1 664 270 76 81 chr13 36259246 36259307 -65613862 - MLT1H1 LTR MaLR -488 67 7 846 314 112 38 chr13 36259313 36259921 -65613248 - L2 LINE L2 -564 2750 2098 22 56 0 0 chr13 36259946 36259982 -65613187 + AT_rich Low_complexity Low_complexity 1 36 0 249 103 64 13 chr13 36260056 36260134 -65613035 + (TA)n Simple_repeat Simple_repeat 1 82 0 274 372 146 12 chr13 36261161 36261497 -65611672 - L2 LINE L2 -585 2729 2349 389 288 23 0 chr13 36262264 36262396 -65610773 + LTR67 LTR ERVL 409 543 -14 351 271 52 10 chr13 36262659 36262755 -65610414 + L2 LINE L2 3144 3243 -29 290 287 11 0 chr13 36262758 36262845 -65610324 + (CATA)n Simple_repeat Simple_repeat 4 91 0 1968 116 3 46 chr13 36262971 36263274 -65609895 + AluSx SINE Alu 23 312 0 261 273 65 0 chr13 36263656 36263733 -65609436 - MIR SINE MIR -120 142 61 720 244 121 3 chr13 36264637 36265026 -65608143 + L1M4 LINE L1 3072 3506 -2640 384 215 0 13 chr13 36265068 36265147 -65608022 - L1PB4 LINE L1 -71 6085 6008 * 2238 173 65 41 chr13 36265145 36265858 -65607311 - L1 LINE L1 -2352 3794 3065 * 23741 140 16 9 chr13 36265854 36271734 -65601435 - L1PA8A LINE L1 -487 5959 3 1553 157 60 14 chr13 36271784 36272201 -65600968 + MER61D LTR ERV1 1 491 -10 5667 29 0 0 chr13 36272625 36273285 -65599884 - L1PA4 LINE L1 -4 6151 5492 222 290 77 84 chr13 36274176 36274331 -65598838 - L2 LINE L2 -194 3078 2925 1146 236 78 17 chr13 36275008 36275352 -65597817 - MLT1A1 LTR MaLR 0 365 1 384 273 71 66 chr13 36275845 36276043 -65597126 + MIR SINE MIR 5 203 -59 822 305 78 16 chr13 36276045 36276419 -65596750 + MLT1I LTR MaLR 5 401 -8 186 259 56 0 chr13 36276925 36276979 -65596190 - MER5A DNA MER1_type -2 187 131 761 256 91 41 chr13 36276979 36277929 -65595240 - L1MD3 LINE L1 -14 7981 6922 195 42 0 0 chr13 36277929 36277953 -65595216 + (TG)n Simple_repeat Simple_repeat 1 24 0 761 256 91 41 chr13 36277953 36278039 -65595130 - L1MD3 LINE L1 -1073 6922 6842 242 306 36 45 chr13 36278049 36278160 -65595009 + MER5A DNA MER1_type 80 189 0 1367 335 146 21 chr13 36278577 36279907 -65593262 - L2 LINE L2 -3 3269 1764 504 117 0 0 chr13 36280798 36280875 -65592294 + MADE1 DNA Mariner 1 77 -3 663 180 80 10 chr13 36283569 36283769 -65589400 - Charlie5 DNA MER1_type -54 2558 2345 409 322 163 15 chr13 36283771 36284097 -65589072 - L1ME4a LINE L1 -246 5875 5502 2156 163 117 42 chr13 36284662 36285216 -65587953 - LTR1B LTR ERV1 -226 600 5 998 160 137 18 chr13 36285217 36285620 -65587549 + LTR1B LTR ERV1 332 826 0 614 183 138 29 chr13 36286697 36286937 -65586232 - MER20B DNA MER1_type 0 783 518 763 269 25 4 chr13 36287109 36287354 -65585815 - MER20B DNA MER1_type -510 273 24 295 290 49 31 chr13 36287381 36287534 -65585635 - MIR SINE MIR -49 159 3 403 236 81 0 chr13 36287947 36288070 -65585099 - MIR SINE MIR -27 235 103 9966 174 33 11 chr13 36288688 36291508 -65581661 + L1PA13 LINE L1 3321 6150 -13 533 13 120 0 chr13 36291532 36291607 -65581562 - L1PA3 LINE L1 0 6155 6072 2294 164 26 17 chr13 36292135 36292557 -65580612 + MSTB LTR MaLR 1 426 0 415 206 7 20 chr13 36292789 36292935 -65580234 + (TGG)n Simple_repeat Simple_repeat 2 145 0 364 171 80 0 chr13 36293517 36293605 -65579564 - L1MB4 LINE L1 0 6180 6086 13553 188 50 21 chr13 36293622 36299248 -65573921 - L1MA4 LINE L1 -292 6190 381 6042 12 0 0 chr13 36299248 36299927 -65573242 - L1PA2 LINE L1 -1 6154 5476 13553 188 50 21 chr13 36299927 36300320 -65572849 - L1MA4 LINE L1 -6101 381 1 773 199 79 28 chr13 36302511 36302727 -65570442 + MLT2D LTR ERVL 1 227 -187 2288 69 0 75 chr13 36302727 36303060 -65570109 - AluY SINE Alu -2 309 2 233 73 146 36 chr13 36303073 36303128 -65570041 + MLT2D LTR ERVL 404 464 0 260 271 93 25 chr13 36303130 36303248 -65569921 + MIR SINE MIR 79 204 -58 590 231 82 0 chr13 36303272 36303406 -65569763 - MIR SINE MIR -46 216 72 591 262 61 19 chr13 36303408 36303622 -65569547 + MLT1J2 LTR MaLR 1 223 -227 537 274 218 0 chr13 36304130 36304309 -65568860 + MIR SINE MIR 24 241 -21 2169 164 56 10 chr13 36304316 36304725 -65568444 - MSTA LTR MaLR 0 428 1 2008 105 3 48 chr13 36307120 36307298 -65565871 + AluSx SINE Alu 1 161 -143 3930 73 176 32 chr13 36307298 36307899 -65565270 - LTR12 LTR ERV1 0 688 1 2008 105 3 48 chr13 36307899 36308037 -65565132 + AluSx SINE Alu 161 304 0 218 366 0 24 chr13 36308252 36308334 -65564835 - L2 LINE L2 -7 3306 3227 1956 208 126 26 chr13 36308509 36309008 -65564161 + MLT1H LTR MaLR 1 549 0 254 300 41 59 chr13 36309010 36309180 -65563989 - L2 LINE L2 -216 3056 2890 319 300 71 36 chr13 36309376 36309516 -65563653 - L2 LINE L2 -1325 1989 1845 1322 214 51 42 chr13 36309877 36310233 -65562936 + MLT1A1 LTR MaLR 1 359 -6 7897 200 24 25 chr13 36310241 36311915 -65561254 + MLT1A1-int LTR MaLR 64 1735 0 550 222 0 17 chr13 36311916 36312033 -65561136 + MLT1A1 LTR MaLR 2 116 -312 6554 50 15 1 chr13 36312069 36312936 -65560233 - L1PA5 LINE L1 0 6154 5276 2490 116 36 3 chr13 36312940 36313327 -65559842 + MSTA LTR MaLR 29 428 0 772 215 32 59 chr13 36313327 36313579 -65559590 + MLT1A1 LTR MaLR 115 420 -8 22 35 0 0 chr13 36313704 36313733 -65559436 + AT_rich Low_complexity Low_complexity 1 29 0 207 69 0 0 chr13 36314116 36314145 -65559024 + (TG)n Simple_repeat Simple_repeat 2 30 0 809 215 6 12 chr13 36314637 36314800 -65558369 - FRAM SINE Alu -4 162 1 427 284 71 7 chr13 36314941 36315096 -65558073 + MIR SINE MIR 98 262 0 214 267 79 30 chr13 36315102 36315203 -65557966 - L2 LINE L2 -47 3266 3161 1567 240 29 41 chr13 36315957 36316544 -65556625 - L1ME1 LINE L1 -2 6164 5585 1563 195 138 3 chr13 36316573 36316957 -65556212 - L1P LINE L1 -1938 4911 4476 654 250 57 25 chr13 36316982 36317298 -65555871 - L1ME1 LINE L1 -1463 4683 4358 * 4991 138 22 18 chr13 36317273 36318181 -65554988 - L1PA15 LINE L1 0 6165 5254 2134 103 3 0 chr13 36318196 36318498 -65554671 + THE1A LTR MaLR 1 303 -52 840 97 0 0 chr13 36318499 36318613 -65554556 + THE1A LTR MaLR 242 355 0 11439 97 16 1 chr13 36318613 36320170 -65552999 + THE1A-int LTR MaLR 1 1580 0 2678 90 3 3 chr13 36320170 36320525 -65552644 + THE1A LTR MaLR 1 355 0 1821 232 18 2 chr13 36320538 36321029 -65552140 - L1PA15 LINE L1 -961 5185 4687 8649 202 39 8 chr13 36321029 36321901 -65551268 - L1PA15-16 LINE L1 -2357 4492 3648 2085 118 0 0 chr13 36321901 36322181 -65550988 - AluSg SINE Alu -1 309 30 8649 202 39 8 chr13 36322181 36324257 -65548912 - L1PA15-16 LINE L1 -3201 3648 1447 2381 149 14 30 chr13 36324257 36324578 -65548591 + MSTA LTR MaLR 1 315 -113 2877 186 25 73 chr13 36324578 36325304 -65547865 - LTR8 LTR ERV1 0 691 1 2381 149 14 30 chr13 36325304 36325417 -65547752 + MSTA LTR MaLR 315 428 0 8428 186 24 1 chr13 36325417 36327024 -65546145 + MSTA-int LTR MaLR 1 1644 -7 2038 173 50 24 chr13 36327031 36327215 -65545954 + MSTA LTR MaLR 1 179 -249 2170 110 0 23 chr13 36327215 36327515 -65545654 + AluSq SINE Alu 6 298 -15 2038 173 50 24 chr13 36327515 36327747 -65545422 + MSTA LTR MaLR 179 428 0 6052 208 32 8 chr13 36327747 36329387 -65543782 - L1PA15-16 LINE L1 -5398 1451 1 2992 143 66 0 chr13 36329390 36329979 -65543190 + Tigger3b DNA MER2_type 295 922 -309 2130 130 15 56 chr13 36329980 36330371 -65542798 - THE1C LTR MaLR 0 375 1 9143 125 13 64 chr13 36330371 36332036 -65541133 - THE1C-int LTR MaLR 0 1580 1 2224 133 24 27 chr13 36332036 36332412 -65540757 - THE1C LTR MaLR 0 375 1 939 104 45 0 chr13 36332413 36332567 -65540602 + Tigger3b DNA MER2_type 925 1085 -147 497 108 0 0 chr13 36332572 36332646 -65540523 - Tigger3(Golem) DNA MER2_type -62 2967 2894 2092 125 0 0 chr13 36332947 36333262 -65539907 + AluSg SINE Alu 1 315 0 780 170 7 0 chr13 36333265 36333400 -65539769 + Tigger3(Golem) DNA MER2_type 2892 3027 -2 336 281 42 0 chr13 36333566 36333662 -65539507 - MIR SINE MIR -115 147 48 27099 105 18 48 chr13 36333756 36340161 -65533008 - L1PA7 LINE L1 0 6154 12 1998 140 11 0 chr13 36341314 36341599 -65531570 - AluJo SINE Alu -19 293 6 657 273 71 8 chr13 36342996 36343234 -65529935 + MLT1I LTR MaLR 98 350 -59 343 273 49 7 chr13 36343493 36343645 -65529524 - L1ME LINE L1 -5154 1376 1203 479 271 124 77 chr13 36343695 36343797 -65529372 - L1MEd LINE L1 -1024 1466 1370 1907 154 50 3 chr13 36343797 36344095 -65529074 - AluJb SINE Alu 0 312 1 479 271 124 77 chr13 36344095 36344370 -65528799 - L1MEd LINE L1 -1120 1370 1109 2347 86 0 7 chr13 36344370 36344672 -65528497 - AluSc SINE Alu -9 300 1 479 271 124 77 chr13 36344672 36344824 -65528345 - L1MEd LINE L1 -1381 1109 815 1120 261 160 7 chr13 36344839 36345476 -65527693 - L2 LINE L2 -4 3309 2566 21 57 0 0 chr13 36345691 36345726 -65527443 + AT_rich Low_complexity Low_complexity 1 35 0 245 98 24 0 chr13 36346486 36346527 -65526642 + (GGGAGA)n Simple_repeat Simple_repeat 2 43 0 386 204 10 0 chr13 36346537 36346640 -65526529 + (TAGA)n Simple_repeat Simple_repeat 3 106 0 300 93 0 0 chr13 36346645 36346688 -65526481 + MADE1 DNA Mariner 6 48 -32 2125 138 7 0 chr13 36347154 36347458 -65525711 + AluSx SINE Alu 1 306 -6 268 327 53 53 chr13 36348186 36348336 -65524833 + MIR3 SINE MIR 4 153 -55 1005 227 153 9 chr13 36348791 36349117 -65524052 + LOR1b LTR ERV1 81 453 -8 21 0 0 0 chr13 36349498 36349519 -65523650 + AT_rich Low_complexity Low_complexity 1 21 0 1776 167 73 6 chr13 36352396 36352546 -65520623 + MLT1A1 LTR MaLR 2 140 -225 2495 69 0 0 chr13 36352546 36352850 -65520319 + AluY SINE Alu 1 304 -7 1776 167 73 6 chr13 36352850 36353040 -65520129 + MLT1A1 LTR MaLR 140 365 0 580 243 68 0 chr13 36354015 36354163 -65519006 - MIR SINE MIR 0 262 105 1176 248 148 12 chr13 36354292 36354772 -65518397 + HsTC2 DNA Tc2 1268 1812 -86 206 317 37 0 chr13 36355058 36355140 -65518029 - MIR SINE MIR -66 196 112 823 301 65 12 chr13 36355174 36355499 -65517670 - LTR16A LTR ERVL -13 437 96 290 235 47 12 chr13 36356182 36356267 -65516902 - HERV16 LTR ERVL -3633 1363 1276 942 237 57 0 chr13 36356482 36356693 -65516476 + MER58A DNA MER1_type 2 224 0 231 241 181 0 chr13 36358657 36358740 -65514429 - L2 LINE L2 -12 3301 3204 725 324 137 26 chr13 36361356 36362156 -65511013 + L2 LINE L2 2405 3282 -31 3060 140 75 15 chr13 36362947 36363548 -65509621 - MER67C LTR ERV1 0 710 74 4837 175 44 27 chr13 36363572 36364159 -65509010 - L1MC1 LINE L1 -13 6389 5813 822 126 15 0 chr13 36364159 36364294 -65508875 + MER85 DNA T2_type 2 138 -1 4837 175 44 27 chr13 36364294 36365060 -65508109 - L1MC1 LINE L1 -589 5813 5014 2620 256 37 16 chr13 36365074 36366035 -65507134 - L1MC1 LINE L1 -3118 3097 2153 2435 116 0 79 chr13 36366100 36366541 -65506628 - L1PB1 LINE L1 -9 6142 5737 10178 83 34 1 chr13 36366558 36368755 -65504414 - L1PA7 LINE L1 -4 6150 3779 7880 105 10 21 chr13 36368747 36370047 -65503122 + L1P LINE L1 1924 3208 -2938 * 1715 137 3 0 chr13 36370032 36370348 -65502821 - L1PB1 LINE L1 -405 5746 5393 * 2312 206 30 13 chr13 36370348 36370918 -65502251 - L1MCa LINE L1 -3119 3307 2725 198 0 0 0 chr13 36370918 36370940 -65502229 + (TA)n Simple_repeat Simple_repeat 2 23 0 2312 206 30 13 chr13 36370940 36370967 -65502202 - L1MCa LINE L1 -3701 2725 2700 4120 124 29 17 chr13 36370973 36371730 -65501439 - L1PBa LINE L1 -4782 2081 1316 3033 154 26 53 chr13 36371727 36372167 -65501002 - L1PBa LINE L1 -6256 607 157 * 2117 131 13 0 chr13 36372167 36372473 -65500696 - AluSg SINE Alu 0 310 1 3033 154 26 53 chr13 36372473 36372493 -65500676 - L1PBa LINE L1 -6706 157 138 4356 25 4 2 chr13 36372493 36373008 -65500161 - L1PA3 LINE L1 0 6155 5640 3033 154 26 53 chr13 36373008 36373170 -65499999 - L1PBa LINE L1 -6725 138 1 856 167 83 38 chr13 36373177 36373318 -65499851 - L1MCa LINE L1 -4098 2328 2195 1844 155 0 11 chr13 36373318 36373595 -65499574 - AluSx SINE Alu -19 293 20 856 167 83 38 chr13 36373595 36373717 -65499452 - L1MCa LINE L1 -4231 2195 2053 4703 144 28 95 chr13 36373722 36374646 -65498523 - L1MCa LINE L1 -4273 2154 1170 1407 174 85 26 chr13 36374646 36374916 -65498253 + AluJo SINE Alu 5 290 -22 4703 144 28 95 chr13 36374916 36374954 -65498215 - L1MCa LINE L1 -5257 1170 1131 2045 118 4 0 chr13 36374954 36375258 -65497911 - AluSx SINE Alu 0 305 1 4703 144 28 95 chr13 36375258 36375488 -65497681 - L1MCa LINE L1 -5296 1131 597 1583 181 59 43 chr13 36375491 36375862 -65497307 - L1MCa LINE L1 -6003 423 47 21 0 0 0 chr13 36377595 36377616 -65495553 + AT_rich Low_complexity Low_complexity 1 21 0 2081 189 63 39 chr13 36378661 36379154 -65494015 + MLT1D LTR MaLR 1 505 0 646 339 60 39 chr13 36380314 36380697 -65492472 - L2 LINE L2 -491 2823 2433 1359 194 22 19 chr13 36380765 36381033 -65492136 - AluJo SINE Alu -43 269 1 5189 107 7 1 chr13 36381640 36382414 -65490755 + HERV9 LTR ERV1 7622 8399 0 1391 94 213 0 chr13 36382414 36382649 -65490520 + LTR12 LTR ERV1 1 285 -429 227 244 33 22 chr13 36382649 36382739 -65490430 + LTR30 LTR ERV1 552 642 -80 688 130 0 0 chr13 36382742 36382842 -65490327 + LTR12 LTR ERV1 615 714 0 1984 101 4 8 chr13 36382842 36383110 -65490059 + AluSx SINE Alu 31 297 -15 351 254 141 16 chr13 36384699 36384947 -65488222 - L1ME4a LINE L1 -208 5913 5635 225 163 0 0 chr13 36385248 36385297 -65487872 + (TA)n Simple_repeat Simple_repeat 1 49 0 428 231 130 6 chr13 36385354 36385523 -65487646 + MER20 DNA MER1_type 30 219 0 1359 207 183 19 chr13 36386365 36386747 -65486422 + MLT1D LTR MaLR 8 433 -72 201 183 28 28 chr13 36387470 36387541 -65485628 + (TA)n Simple_repeat Simple_repeat 2 72 0 285 386 29 7 chr13 36387880 36388020 -65485149 + MIR SINE MIR 4 146 -116 422 306 19 6 chr13 36388146 36388303 -65484866 + L1ME1 LINE L1 5945 6103 -63 1672 260 67 44 chr13 36388346 36389467 -65483702 - L1MEc LINE L1 -4664 1732 541 491 205 58 85 chr13 36389438 36389662 -65483507 - L1M1 LINE L1 -4041 2174 1957 * 683 353 42 16 chr13 36390268 36390650 -65482519 + L1M3c LINE L1 1 392 -5749 960 99 0 14 chr13 36391149 36391290 -65481879 - MLT2A2 LTR ERVL 0 453 315 1075 245 0 0 chr13 36391301 36391501 -65481668 + MER8 DNA MER2_type 40 239 0 508 170 9 9 chr13 36391521 36391627 -65481542 + Charlie5 DNA MER1_type 2516 2621 0 246 260 240 34 chr13 36392075 36392221 -65480948 + MIR SINE MIR 67 242 -20 219 310 0 0 chr13 36392333 36392404 -65480765 + MIR SINE MIR 84 154 -108 372 244 89 1 chr13 36393161 36393308 -65479861 - HAL1b LINE L1 -2 6119 1201 183 184 0 0 chr13 36393332 36393370 -65479799 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 209 225 0 0 chr13 36393426 36393466 -65479703 + L2 LINE L2 3258 3297 -16 552 250 27 79 chr13 36393501 36393829 -65479340 - L1ME4a LINE L1 -249 5872 5562 280 105 0 46 chr13 36393964 36394019 -65479150 - FLAM_A SINE Alu -1 132 86 211 336 132 28 chr13 36394631 36394881 -65478288 + L2 LINE L2 2468 2743 -571 203 375 0 14 chr13 36445294 36445366 -65427803 - MIR SINE MIR -155 107 37 225 320 117 10 chr13 36446531 36446634 -65426535 + MIR3 SINE MIR 43 156 -52 2003 140 17 10 chr13 36446960 36447260 -65425909 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr13 36448496 36448520 -65424649 + AT_rich Low_complexity Low_complexity 1 24 0 267 263 0 0 chr13 36449656 36449713 -65423456 + L2 LINE L2 3251 3307 -6 271 217 214 67 chr13 36449911 36450126 -65423043 + L1ME4a LINE L1 5712 5894 -227 1529 170 41 52 chr13 36450126 36450491 -65422678 + MLT1A1 LTR MaLR 1 361 -4 271 217 214 67 chr13 36450491 36450616 -65422553 + L1ME4a LINE L1 5894 6102 -19 192 40 0 0 chr13 36450616 36450641 -65422528 + (TG)n Simple_repeat Simple_repeat 2 26 0 383 88 63 38 chr13 36451021 36451058 -65422111 + (TA)n Simple_repeat Simple_repeat 1 36 -127 1148 171 45 0 chr13 36451058 36451257 -65421912 - MER6B DNA MER2_type 0 210 3 383 88 63 38 chr13 36451257 36451378 -65421791 + (TA)n Simple_repeat Simple_repeat 36 163 0 28 0 0 0 chr13 36451609 36451637 -65421532 + AT_rich Low_complexity Low_complexity 1 28 0 2204 92 0 7 chr13 36451645 36451929 -65421240 - AluY SINE Alu -29 282 1 1574 139 37 29 chr13 36452006 36452210 -65420959 - MLT1A1 LTR MaLR 0 365 157 1492 119 163 16 chr13 36452210 36452462 -65420707 - AluSg1 SINE Alu -20 289 1 1574 139 37 29 chr13 36452462 36452530 -65420639 - MLT1A1 LTR MaLR -208 157 91 460 202 0 11 chr13 36452630 36452724 -65420445 - MLT1A1 LTR MaLR -272 93 1 731 250 31 35 chr13 36452940 36453168 -65420001 - L1ME3 LINE L1 -87 6075 5849 * 4910 148 12 69 chr13 36453152 36454903 -65418266 - L1PB1 LINE L1 -70 6396 4731 1298 206 18 0 chr13 36454893 36455174 -65417995 - L1PB1 LINE L1 -3626 2835 2550 * 4223 190 26 8 chr13 36455185 36456089 -65417080 - L1 LINE L1 -1731 4415 3495 4569 145 6 4 chr13 36456220 36456949 -65416220 - L1PB1 LINE L1 -5144 731 2 234 264 111 0 chr13 36457169 36457241 -65415928 + MIR SINE MIR 67 146 -116 3135 81 45 0 chr13 36457406 36457824 -65415345 + LTR3b LTR ERVK 1 437 0 23 0 0 0 chr13 36458012 36458035 -65415134 + AT_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr13 36458432 36458462 -65414707 + (A)n Simple_repeat Simple_repeat 1 30 0 2259 118 0 0 chr13 36458783 36459089 -65414080 - AluSg SINE Alu -4 306 1 1901 158 32 16 chr13 36460991 36461301 -65411868 + 7SLRNA srpRNA srpRNA 1 315 -5 2162 86 4 4 chr13 36461927 36462228 -65410941 - AluSc SINE Alu 0 303 3 2326 109 14 3 chr13 36462624 36462974 -65410195 + L1PB1 LINE L1 5798 6151 0 1847 193 13 80 chr13 36463379 36463613 -65409556 - L1M4 LINE L1 -876 5270 5089 2627 30 0 0 chr13 36463613 36463908 -65409261 - AluYb8 SINE Alu -2 316 22 1847 193 13 80 chr13 36463908 36464196 -65408973 - L1M4 LINE L1 -1057 5089 4783 317 314 29 9 chr13 36464207 36464312 -65408857 - MIR SINE MIR -62 146 40 813 194 78 0 chr13 36465453 36465644 -65407525 + L1 LINE L1 3451 3656 -2490 1673 145 37 7 chr13 36465645 36465941 -65407228 + L1PB4 LINE L1 5850 6154 -2 3791 96 34 26 chr13 36466863 36467582 -65405587 - L1PA8A LINE L1 -644 5487 4781 * 10708 131 11 1 chr13 36467579 36469291 -65403878 + L1PA8A LINE L1 3041 4769 -1377 2366 171 60 50 chr13 36470077 36470592 -65402577 - MLT2B1 LTR ERVL 0 520 1 274 291 23 0 chr13 36472593 36472679 -65400490 + MER103 DNA DNA 46 133 -33 237 65 0 0 chr13 36473265 36473296 -65399873 + (TATG)n Simple_repeat Simple_repeat 2 32 0 562 214 24 8 chr13 36473448 36473574 -65399595 - MIR SINE MIR -56 206 79 22 0 0 0 chr13 36475712 36475734 -65397435 + AT_rich Low_complexity Low_complexity 1 22 0 216 260 178 14 chr13 36476418 36476491 -65396678 + L2 LINE L2 3229 3313 0 188 192 11 62 chr13 36477574 36477751 -65395418 + (TATATG)n Simple_repeat Simple_repeat 6 173 0 21 0 0 0 chr13 36477970 36477991 -65395178 + AT_rich Low_complexity Low_complexity 1 21 0 1373 222 7 7 chr13 36478091 36478375 -65394794 + AluJo SINE Alu 1 284 -28 474 300 131 45 chr13 36478612 36478739 -65394430 - L1MEd LINE L1 -4875 1244 1129 2315 76 3 3 chr13 36478739 36479042 -65394127 + AluY SINE Alu 1 303 -8 474 300 131 45 chr13 36479042 36479334 -65393835 - L1MEd LINE L1 -4990 1129 789 263 102 0 20 chr13 36479461 36479510 -65393659 + (TA)n Simple_repeat Simple_repeat 2 49 0 317 340 10 0 chr13 36481228 36481328 -65391841 - L3 LINE CR1 -187 1390 1290 819 324 136 23 chr13 36481337 36481472 -65391697 - L3 LINE CR1 -769 808 690 2439 113 28 22 chr13 36481472 36481834 -65391335 - THE1B LTR MaLR 0 364 1 819 324 136 23 chr13 36481834 36482140 -65391029 - L3 LINE CR1 -887 690 317 619 293 83 9 chr13 36482519 36482748 -65390421 + MIR SINE MIR 11 256 -6 202 214 0 143 chr13 36483098 36483196 -65389973 - MIR SINE MIR -144 118 35 7071 82 10 1 chr13 36483360 36484402 -65388767 + L1P LINE L1 4380 5428 -727 359 304 219 0 chr13 36484672 36484873 -65388296 + L2 LINE L2 2150 2394 -920 1200 165 238 36 chr13 36484878 36485181 -65387988 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr13 36486561 36486585 -65386584 + AT_rich Low_complexity Low_complexity 1 24 0 1676 181 7 0 chr13 36488106 36488398 -65384771 - AluSx SINE Alu -18 294 1 254 190 35 0 chr13 36491651 36491709 -65381460 + LTR61 LTR ERV1 218 277 -318 1400 174 42 122 chr13 36493009 36493412 -65379757 + MER67D LTR ERV1 1 371 -143 888 157 220 0 chr13 36493427 36493618 -65379551 - Tigger3(Golem) DNA MER2_type -35 2994 2762 4673 24 0 0 chr13 36493618 36494158 -65379011 + L1PA4 LINE L1 5506 6045 -110 452 267 272 15 chr13 36494482 36494677 -65378492 + MIR SINE MIR 10 254 -8 2122 135 0 0 chr13 36494685 36494981 -65378188 - AluSg SINE Alu -14 296 1 491 303 28 17 chr13 36497213 36497391 -65375778 + MIR SINE MIR 69 248 -14 1615 194 0 14 chr13 36497408 36497691 -65375478 + AluJo SINE Alu 3 281 -31 277 240 264 31 chr13 36497755 36497884 -65375285 - MIR SINE MIR -102 160 2 225 65 0 0 chr13 36498289 36498320 -65374849 + (TG)n Simple_repeat Simple_repeat 1 31 0 493 325 16 31 chr13 36498838 36499032 -65374137 - MIR SINE MIR -69 193 3 324 0 0 0 chr13 36499722 36499758 -65373411 + (CA)n Simple_repeat Simple_repeat 2 37 0 2921 197 32 65 chr13 36499982 36500091 -65373078 - L1MD1 LINE L1 -19 6223 6112 336 94 0 0 chr13 36500091 36500144 -65373025 - L1MA9 LINE L1 -1 6311 6259 2921 197 32 65 chr13 36500144 36500463 -65372706 - L1MD1 LINE L1 -130 6112 5784 2545 132 31 24 chr13 36500463 36500888 -65372281 + MSTA LTR MaLR 1 428 0 2921 197 32 65 chr13 36500888 36501101 -65372068 - L1MD1 LINE L1 -458 5784 5610 2261 108 3 3 chr13 36501101 36501406 -65371763 - AluSx SINE Alu -7 305 1 2921 197 32 65 chr13 36501406 36501568 -65371601 - L1MD1 LINE L1 -632 5610 5444 4907 111 18 5 chr13 36501588 36502366 -65370803 - L1MA2 LINE L1 0 6304 5517 14036 135 37 14 chr13 36502471 36504904 -65368265 + L1P LINE L1 1407 3897 -2249 2546 251 61 35 chr13 36505034 36505870 -65367299 + L1MB8 LINE L1 46 903 -5639 353 314 21 7 chr13 36505876 36506016 -65367153 + L1M4 LINE L1 1794 1935 -4711 2162 230 65 62 chr13 36506019 36506391 -65366778 + L1MB8 LINE L1 913 1283 -5542 1535 201 3 31 chr13 36506391 36506679 -65366490 - AluJb SINE Alu -30 282 3 2162 230 65 62 chr13 36506679 36507422 -65365747 + L1MB8 LINE L1 1283 2165 -4660 2594 26 7 7 chr13 36507422 36507726 -65365443 + AluY SINE Alu 1 304 -7 2162 230 65 62 chr13 36507726 36507974 -65365195 + L1MB8 LINE L1 2165 2411 -4414 10188 148 49 4 chr13 36507986 36509665 -65363504 + Tigger4(Zombi) DNA MER2_type 28 1781 -950 232 225 70 0 chr13 36509691 36509762 -65363407 - L1MA4 LINE L1 -22 7697 7622 19995 200 30 47 chr13 36510074 36511278 -65361891 - L1MA4 LINE L1 -83 7636 6413 423 139 13 0 chr13 36511278 36511357 -65361812 - MADE1 DNA Mariner 0 80 1 19995 200 30 47 chr13 36511357 36512590 -65360579 - L1MA4 LINE L1 -1306 6413 5160 1290 128 10 15 chr13 36512590 36512786 -65360383 + AluY SINE Alu 100 294 -17 19995 200 30 47 chr13 36512786 36517200 -65355969 - L1MA4 LINE L1 -2559 5160 856 1914 129 18 4 chr13 36517200 36517478 -65355691 + AluSx SINE Alu 1 282 -30 19995 200 30 47 chr13 36517478 36518299 -65354870 - L1MA4 LINE L1 -6863 856 22 1620 164 26 3 chr13 36518321 36518626 -65354543 - L1MC1 LINE L1 -5 6328 6017 736 158 19 6 chr13 36518627 36518785 -65354384 - L1MC1 LINE L1 -917 5442 5283 * 37412 34 1 0 chr13 36518781 36524092 -65349077 - L1PA3 LINE L1 -2 6153 838 6137 73 13 4 chr13 36524192 36525024 -65348145 + L1PA7 LINE L1 5311 6150 -4 4696 240 62 14 chr13 36525100 36525377 -65347792 + L1MB8 LINE L1 2615 2877 -3767 2010 147 0 0 chr13 36525377 36525710 -65347459 + AluSq SINE Alu 1 333 0 4696 240 62 14 chr13 36525710 36527095 -65346074 + L1MB8 LINE L1 2877 4358 -2286 1390 192 17 10 chr13 36527097 36527388 -65345781 + L1MA9 LINE L1 5856 6148 -164 9578 177 44 31 chr13 36527400 36529224 -65343945 - L1MA7 LINE L1 -6 6285 4396 245 29 29 0 chr13 36529224 36529258 -65343911 + (TA)n Simple_repeat Simple_repeat 1 35 0 9578 177 44 31 chr13 36529258 36530676 -65342493 - L1MA7 LINE L1 -1895 4396 2998 286 290 11 86 chr13 36530680 36530866 -65342303 + L1MA10 LINE L1 6145 6316 -18 3169 228 61 15 chr13 36530904 36533061 -65340108 + L1MB8 LINE L1 4352 6648 -28 3637 226 113 57 chr13 36533179 36534647 -65338522 + L1M4 LINE L1 2224 3774 -2372 4043 150 10 46 chr13 36534648 36535459 -65337710 + L1 LINE L1 4495 5276 -870 1425 215 3 14 chr13 36535459 36535743 -65337426 + AluJo SINE Alu 1 281 -31 522 318 71 62 chr13 36535852 36536305 -65336864 + LTR67 LTR ERVL 44 500 -57 180 278 111 0 chr13 36536308 36536380 -65336789 - MIR SINE MIR -75 133 54 341 164 27 55 chr13 36537462 36537535 -65335634 - MLT1A2 LTR MaLR -311 63 1 376 288 58 37 chr13 36538269 36538460 -65334709 - L2 LINE L2 -5 3308 3114 217 86 0 0 chr13 36538651 36538686 -65334483 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 501 117 0 26 chr13 36538686 36538763 -65334406 - AluSg/x SINE Alu -1 314 206 229 132 0 0 chr13 36538808 36538846 -65334323 - AluSg/x SINE Alu -87 215 178 1479 132 5 0 chr13 36538810 36539022 -65334147 - AluSx SINE Alu -99 213 1 270 325 0 88 chr13 36539024 36539138 -65334031 - MER5B DNA MER1_type -74 104 1 405 287 43 19 chr13 36539424 36539633 -65333536 + L1M4 LINE L1 3788 4001 -2145 242 345 46 0 chr13 36539922 36540009 -65333160 + MIR SINE MIR 20 110 -152 318 217 0 17 chr13 36540223 36540283 -65332886 + L2 LINE L2 3208 3266 -6 24 32 0 0 chr13 36540299 36540330 -65332839 + AT_rich Low_complexity Low_complexity 1 31 0 272 70 23 0 chr13 36541256 36541299 -65331870 + (CA)n Simple_repeat Simple_repeat 1 44 0 456 19 0 0 chr13 36542168 36542221 -65330948 + (TG)n Simple_repeat Simple_repeat 2 54 0 680 250 50 6 chr13 36542373 36542553 -65330616 + MIR SINE MIR 49 236 -26 184 274 0 59 chr13 36542522 36542573 -65330596 + L2 LINE L2 3210 3257 -15 * 251 299 75 124 chr13 36542725 36543193 -65329976 - L2 LINE L2 0 3272 2828 1604 164 8 109 chr13 36543581 36543977 -65329192 - LTR8 LTR ERV1 -335 356 1 6337 120 185 8 chr13 36543977 36545118 -65328051 - L1PBa LINE L1 -4885 1978 636 1126 161 0 0 chr13 36545120 36545313 -65327856 - L1PBa LINE L1 -6663 200 8 2049 239 70 31 chr13 36545320 36546355 -65326814 - L1ME LINE L1 -579 5583 4501 4665 175 47 17 chr13 36546395 36547436 -65325733 - L1MA8 LINE L1 -5 6286 5216 2541 53 0 0 chr13 36547643 36547945 -65325224 + AluY SINE Alu 1 302 -9 266 380 38 20 chr13 36548452 36548622 -65324547 + MIR SINE MIR 7 187 -75 634 314 181 13 chr13 36548807 36549189 -65323980 - LTR33 LTR ERVL 0 521 76 530 94 7 17 chr13 36549401 36549534 -65323635 - L1P5 LINE L1 -704 5452 5326 314 395 107 11 chr13 36549806 36550069 -65323100 + L2 LINE L2 2985 3272 0 873 121 150 0 chr13 36550313 36550453 -65322716 + MSTA LTR MaLR 18 178 -250 578 67 0 11 chr13 36550453 36550568 -65322601 - Alu SINE Alu 0 312 224 882 83 0 0 chr13 36550568 36550677 -65322492 - AluY SINE Alu -202 109 1 1343 132 42 68 chr13 36550677 36550942 -65322227 + MSTA LTR MaLR 170 427 -1 517 240 124 46 chr13 36551324 36551541 -65321628 + MIR SINE MIR 17 250 -12 251 291 137 8 chr13 36552466 36552583 -65320586 - L2 LINE L2 -15 3298 3167 807 318 26 0 chr13 36552622 36552855 -65320314 - MIR SINE MIR -13 249 11 302 316 21 0 chr13 36552930 36553025 -65320144 + MIR SINE MIR 116 212 -50 346 321 0 0 chr13 36554308 36554420 -65318749 + MIR SINE MIR 151 262 0 21 0 0 0 chr13 36555526 36555547 -65317622 + AT_rich Low_complexity Low_complexity 1 21 0 1837 179 62 89 chr13 36556832 36557346 -65315823 + MLT1D LTR MaLR 6 505 0 1928 250 62 7 chr13 36557493 36558057 -65315112 - L1M4 LINE L1 -995 5151 4557 317 290 48 8 chr13 36558528 36558647 -65314522 + MIR SINE MIR 40 156 -56 363 44 0 0 chr13 36558955 36559000 -65314169 + (TG)n Simple_repeat Simple_repeat 1 45 0 237 169 0 0 chr13 36559002 36559061 -65314108 + GA-rich Low_complexity Low_complexity 2 60 0 273 327 96 0 chr13 36559416 36559520 -65313649 - MIR SINE MIR -130 132 19 389 319 37 15 chr13 36559895 36560030 -65313139 - MIR3 SINE MIR -60 148 11 234 0 0 0 chr13 36561157 36561183 -65311986 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1813 206 122 4 chr13 36561383 36561835 -65311334 - MLT1D LTR MaLR 0 505 1 192 391 76 60 chr13 36562479 36562663 -65310506 - L2 LINE L2 -79 3193 3007 269 289 12 12 chr13 36563339 36563422 -65309747 + GA-rich Low_complexity Low_complexity 3 85 0 189 329 29 50 chr13 36564083 36564223 -65308946 + MIR SINE MIR 39 175 -87 1003 201 169 19 chr13 36564235 36564546 -65308623 + MER47B DNA MER2_type 1 417 -1 1545 202 3 7 chr13 36564620 36564912 -65308257 + AluJb SINE Alu 1 291 -21 1490 173 189 70 chr13 36565634 36565898 -65307271 - MLT1D LTR MaLR 0 505 274 2136 114 0 25 chr13 36565898 36566213 -65306956 + AluSx SINE Alu 1 307 -5 1490 173 189 70 chr13 36566213 36566393 -65306776 - MLT1D LTR MaLR -231 274 8 2307 202 36 0 chr13 36566957 36567458 -65305711 - L1P LINE L1 -967 5179 4661 * 3406 126 38 2 chr13 36567454 36568009 -65305160 - L1PA8A LINE L1 -2413 3733 3159 10437 110 10 4 chr13 36568010 36569891 -65303278 + L1PA8A LINE L1 3730 5621 -510 24 0 0 0 chr13 36570255 36570279 -65302890 + AT_rich Low_complexity Low_complexity 1 24 0 2061 113 35 0 chr13 36570994 36571276 -65301893 - AluSg SINE Alu -18 292 1 867 242 27 7 chr13 36572761 36572964 -65300205 + MIR SINE MIR 18 216 -46 197 192 0 19 chr13 36572970 36573022 -65300147 + (TTA)n Simple_repeat Simple_repeat 2 52 0 610 93 0 56 chr13 36573658 36573766 -65299403 - L1PA2 LINE L1 0 6155 6054 2075 220 126 9 chr13 36574283 36574815 -65298354 + L1MCa LINE L1 17 610 -5816 387 0 0 0 chr13 36574991 36575034 -65298135 + (TG)n Simple_repeat Simple_repeat 2 44 0 225 328 141 0 chr13 36575173 36575301 -65297868 - LTR16C LTR ERVL -242 249 104 201 74 0 0 chr13 36576127 36576154 -65297015 + (A)n Simple_repeat Simple_repeat 1 27 0 259 346 162 13 chr13 36576527 36576761 -65296408 - L3 LINE CR1 -2 1575 1307 776 246 18 0 chr13 36578215 36578386 -65294783 - MLT1D LTR MaLR 0 505 332 188 45 0 0 chr13 36578512 36578534 -65294635 + (A)n Simple_repeat Simple_repeat 1 22 0 448 345 20 35 chr13 36579402 36579599 -65293570 + MIR3 SINE MIR 3 196 -12 212 206 147 98 chr13 36579623 36579725 -65293444 + MIR SINE MIR 125 231 -31 398 340 49 12 chr13 36580133 36580295 -65292874 - MIR3 SINE MIR -25 183 16 2058 122 7 3 chr13 36580382 36580685 -65292484 + AluSx SINE Alu 1 304 -8 201 74 0 0 chr13 36580744 36580771 -65292398 + (T)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr13 36581601 36581629 -65291540 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 36581963 36581992 -65291177 + AT_rich Low_complexity Low_complexity 1 29 0 691 188 111 0 chr13 36582133 36582294 -65290875 - L1ME1 LINE L1 0 6184 5999 410 206 88 101 chr13 36582530 36582758 -65290411 - L1ME1 LINE L1 -1027 5119 4895 1012 233 141 98 chr13 36582759 36583128 -65290041 - MLT1G LTR MaLR -210 385 1 4714 260 68 31 chr13 36585311 36587368 -65285801 + L1MEc LINE L1 37 2168 -4228 2635 113 15 0 chr13 36587429 36587819 -65285350 - L1PA15 LINE L1 -2 6163 5768 1135 169 0 0 chr13 36588087 36588264 -65284905 - MER58A DNA MER1_type -1 223 47 2118 217 93 20 chr13 36588277 36588560 -65284609 - L1ME2 LINE L1 -174 5990 5729 1936 147 0 3 chr13 36588560 36588853 -65284316 - AluSx SINE Alu -20 292 1 2118 217 93 20 chr13 36588853 36589311 -65283858 - L1ME2 LINE L1 -435 5729 5196 1947 176 10 55 chr13 36589314 36589820 -65283349 - L1MC2 LINE L1 -13 6331 5849 1622 214 74 24 chr13 36590238 36590659 -65282510 + L1ME3 LINE L1 5484 5925 -237 583 217 22 109 chr13 36590733 36591000 -65282169 + L1ME3 LINE L1 5911 6154 -8 457 241 94 29 chr13 36591042 36591212 -65281957 + MIR SINE MIR 66 246 -16 297 330 165 0 chr13 36593051 36593166 -65280003 - MIR SINE MIR -73 189 56 1308 204 42 92 chr13 36594930 36595387 -65277782 - MER63B DNA MER1_type 0 436 3 1446 164 174 0 chr13 36595571 36595882 -65277287 + MER47A DNA MER2_type 2 366 0 193 304 165 9 chr13 36596072 36596187 -65276982 + L2 LINE L2 3169 3301 -12 622 221 13 20 chr13 36597328 36597477 -65275692 + L1M4 LINE L1 14 161 -6381 478 248 13 13 chr13 36597506 36597663 -65275506 - L1MB7 LINE L1 -3 6181 6025 1776 168 14 7 chr13 36597663 36597955 -65275214 + AluJb SINE Alu 1 294 -18 1439 95 5 0 chr13 36597992 36598182 -65274987 - AluSx SINE Alu -110 202 12 21 0 0 0 chr13 36598200 36598221 -65274948 + AT_rich Low_complexity Low_complexity 1 21 0 1521 316 92 68 chr13 36599341 36600426 -65272743 + ERVL LTR ERVL 1286 2412 -3352 1564 132 14 14 chr13 36600426 36600706 -65272463 - L1MA5A LINE L1 -5 6292 6013 1521 316 92 68 chr13 36600706 36600997 -65272172 + ERVL LTR ERVL 2412 2695 -3069 555 318 66 37 chr13 36601513 36602019 -65271150 + ERVL LTR ERVL 3375 4221 -1455 1309 140 115 0 chr13 36602117 36602352 -65270817 + MER2 DNA MER2_type 1 262 -83 431 339 103 9 chr13 36602381 36602614 -65270555 + ERVL LTR ERVL 4322 4576 -1188 615 169 16 0 chr13 36602639 36602763 -65270406 + L1MA3 LINE L1 5892 6017 -288 1272 136 0 0 chr13 36602772 36602986 -65270183 + L1MA4 LINE L1 6087 6300 0 725 356 41 41 chr13 36603003 36603691 -65269478 + ERVL LTR ERVL 4654 5341 -423 360 300 75 0 chr13 36603918 36604038 -65269131 + LTR16C LTR ERVL 361 489 -2 1767 159 36 6 chr13 36604227 36604585 -65268584 - L1MA8 LINE L1 -5 6286 5918 424 288 114 74 chr13 36604686 36605064 -65268105 + MLT1J LTR MaLR 116 508 -3 672 327 71 0 chr13 36605070 36605367 -65267802 + L2 LINE L2 2860 3177 -136 721 186 11 40 chr13 36605571 36605748 -65267421 + L1MA10 LINE L1 6151 6322 -12 1437 233 126 28 chr13 36606318 36606927 -65266242 - L1ME3A LINE L1 -21 6143 5453 6920 61 5 7 chr13 36607004 36608169 -65265000 - L1PA8 LINE L1 -17 6155 4990 1288 99 0 0 chr13 36608171 36608352 -65264817 + L1PA8 LINE L1 4808 4988 -1158 305 218 35 23 chr13 36608348 36608435 -65264734 - L1P LINE L1 -768 5398 5311 * 186 43 0 0 chr13 36608439 36608462 -65264707 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 290 111 95 0 chr13 36608465 36608528 -65264641 - L1MC2 LINE L1 -1 6343 6275 372 296 94 5 chr13 36608542 36608745 -65264424 - L1ME3A LINE L1 -862 5284 5064 733 277 61 24 chr13 36608786 36609162 -65264007 - L1M4 LINE L1 -789 5357 4968 2000 251 69 8 chr13 36609355 36610005 -65263164 + L1M4 LINE L1 3196 3885 -2261 1557 266 65 7 chr13 36609983 36610548 -65262621 + L1M4 LINE L1 4171 4768 -1378 * 2662 42 0 0 chr13 36610552 36610863 -65262306 + AluY SINE Alu 1 311 0 364 280 136 0 chr13 36611381 36611513 -65261656 + MIR SINE MIR 113 262 0 294 29 0 0 chr13 36611844 36611879 -65261290 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 198 71 0 0 chr13 36611880 36611908 -65261261 + (CCTA)n Simple_repeat Simple_repeat 1 28 0 2223 93 28 0 chr13 36611927 36612216 -65260953 + AluSq SINE Alu 1 297 -16 1271 184 4 4 chr13 36612425 36612696 -65260473 + AluSx SINE Alu 44 314 0 339 256 123 2 chr13 36612716 36612889 -65260280 + L1MEc LINE L1 660 836 -5234 * 433 226 0 0 chr13 36612884 36612990 -65260179 + L1M4 LINE L1 4465 4570 -1576 1844 280 81 15 chr13 36613029 36613634 -65259535 + L1MDa LINE L1 18 839 -5701 1396 196 33 6 chr13 36613649 36613981 -65259188 + L1MDa LINE L1 1831 2171 -4369 1155 218 66 36 chr13 36614502 36614942 -65258227 + L1MDa LINE L1 2153 2605 -3935 23 0 0 0 chr13 36615099 36615122 -65258047 + AT_rich Low_complexity Low_complexity 1 23 0 377 99 84 28 chr13 36615142 36615213 -65257956 + L1MA1 LINE L1 6228 6302 0 260 200 0 0 chr13 36615229 36615274 -65257895 - L1MA2 LINE L1 -84 6220 6176 436 133 0 0 chr13 36615375 36615450 -65257719 + L1MA1 LINE L1 6228 6302 0 4390 107 19 12 chr13 36615463 36616147 -65257022 - L1MA2 LINE L1 -84 6220 5532 7019 224 13 6 chr13 36616248 36618077 -65255092 + L1M4 LINE L1 1883 3714 -2432 962 135 0 29 chr13 36618077 36618247 -65254922 - L1 LINE L1 -1472 4674 4510 351 163 105 0 chr13 36618256 36618342 -65254827 + L1M4 LINE L1 4454 4548 -1598 401 218 199 44 chr13 36618518 36618611 -65254558 - L1M4 LINE L1 -1543 4603 4526 1029 60 27 0 chr13 36618611 36618761 -65254408 + L1PA4 LINE L1 6002 6155 0 401 218 199 44 chr13 36618761 36618988 -65254181 - L1M4 LINE L1 -1620 4526 4233 327 272 125 46 chr13 36618972 36619147 -65254022 - L1MEc LINE L1 -4949 2173 2013 * 261 0 0 0 chr13 36619147 36619176 -65253993 + (TG)n Simple_repeat Simple_repeat 2 30 0 327 272 125 46 chr13 36619176 36619503 -65253666 - L1MEc LINE L1 -5109 2013 1631 2161 111 10 7 chr13 36619569 36619876 -65253293 - AluSq SINE Alu -5 308 1 333 208 0 14 chr13 36619882 36619954 -65253215 - L1MEc LINE L1 -5075 1348 1278 257 231 0 0 chr13 36620127 36620179 -65252990 + LTR30 LTR ERV1 1 52 -670 1898 100 243 182 chr13 36620181 36620859 -65252310 + LTR12 LTR ERV1 57 2361 -77 977 199 36 0 chr13 36621568 36621764 -65251405 + MER3 DNA MER1_type 2 204 -5 26 0 0 0 chr13 36622143 36622169 -65251000 + AT_rich Low_complexity Low_complexity 1 26 0 973 282 90 40 chr13 36622485 36622993 -65250176 - L2 LINE L2 -3 3310 2777 1996 262 75 35 chr13 36623050 36623858 -65249311 - L2 LINE L2 -1185 2129 1289 248 366 88 16 chr13 36624598 36624904 -65248265 - L2 LINE L2 -947 2367 2040 559 277 31 65 chr13 36624979 36625271 -65247898 + MLT1I LTR MaLR 108 389 -20 525 296 66 10 chr13 36625863 36626103 -65247066 + MIR SINE MIR 9 260 -2 460 76 0 15 chr13 36626254 36626320 -65246849 - AluSc SINE Alu -14 295 231 505 185 74 30 chr13 36626449 36626584 -65246585 + LTR16A LTR ERVL 309 449 -1 236 324 111 11 chr13 36626607 36626719 -65246450 - MLT1J1 LTR MaLR -230 220 98 26 0 0 0 chr13 36627403 36627429 -65245740 + AT_rich Low_complexity Low_complexity 1 26 0 1683 176 7 0 chr13 36627754 36628033 -65245136 - AluJb SINE Alu -31 281 1 204 290 29 0 chr13 36628724 36628793 -65244376 + (TTTA)n Simple_repeat Simple_repeat 4 74 0 318 277 80 66 chr13 36628803 36628940 -65244229 + L2 LINE L2 3171 3309 -4 428 273 129 21 chr13 36628951 36629145 -65244024 + MLT1J LTR MaLR 1 215 -296 678 279 105 0 chr13 36629242 36629461 -65243708 - L1ME3 LINE L1 -15 6147 5906 343 205 24 34 chr13 36629462 36629607 -65243562 - LTR50 LTR ERVL -2 793 637 378 285 36 54 chr13 36629881 36630102 -65243067 - LTR41 LTR ERVL -556 217 1 231 195 39 91 chr13 36631347 36631424 -65241745 + MER91B DNA MER1_type 1 73 -117 727 88 0 0 chr13 36632168 36632270 -65240899 - MLT2C2 LTR ERVL -361 103 2 24 0 0 0 chr13 36632293 36632317 -65240852 + AT_rich Low_complexity Low_complexity 1 24 0 232 211 113 42 chr13 36633353 36633424 -65239745 - MIR SINE MIR -108 154 79 832 113 8 8 chr13 36633627 36633760 -65239409 + L1MA3 LINE L1 6173 6305 0 705 296 105 4 chr13 36634395 36634476 -65238693 - MLT1L LTR MaLR 0 615 544 770 234 61 5 chr13 36634476 36634673 -65238496 + MER63A DNA MER1_type 1 208 -2 705 296 105 4 chr13 36634673 36634858 -65238311 - MLT1L LTR MaLR -71 544 322 498 333 31 0 chr13 36635181 36635343 -65237826 + MIR3 SINE MIR 14 180 -28 195 226 22 109 chr13 36635392 36635494 -65237675 + MIR SINE MIR 74 165 -75 500 79 53 0 chr13 36635564 36635640 -65237529 + MADE1 DNA Mariner 1 80 0 2656 241 43 19 chr13 36636262 36636999 -65236170 + L1M4 LINE L1 3638 4392 -1754 1428 159 31 72 chr13 36636991 36637232 -65235937 + L1MB5 LINE L1 5867 6093 -81 * 2346 98 0 0 chr13 36637232 36637527 -65235642 + AluSx SINE Alu 1 295 -17 1428 159 31 72 chr13 36637527 36637606 -65235563 + L1MB5 LINE L1 6093 6174 0 21 0 0 0 chr13 36637643 36637664 -65235505 + AT_rich Low_complexity Low_complexity 1 21 0 571 273 65 22 chr13 36637730 36638086 -65235083 + L1M4 LINE L1 2194 2564 -3582 25 0 0 0 chr13 36638649 36638674 -65234495 + AT_rich Low_complexity Low_complexity 1 25 0 627 279 28 12 chr13 36638732 36638986 -65234183 - MIR SINE MIR -1 261 4 369 277 22 66 chr13 36639041 36639178 -65233991 - MIR3 SINE MIR -64 144 14 272 216 41 10 chr13 36639660 36639757 -65233412 + (TA)n Simple_repeat Simple_repeat 1 100 0 3773 223 48 15 chr13 36640136 36641192 -65231977 + L1M4 LINE L1 3683 4773 -1373 2034 153 7 0 chr13 36642376 36642683 -65230486 - AluJo SINE Alu -3 309 1 4515 64 7 7 chr13 36642707 36643302 -65229867 - L1PA7 LINE L1 -3 6151 5557 975 172 73 1 chr13 36643367 36643566 -65229603 + L1MA7 LINE L1 6031 6248 -43 2164 112 3 7 chr13 36643566 36643870 -65229299 + AluSq SINE Alu 1 303 -10 975 172 73 1 chr13 36643870 36643889 -65229280 + L1MA7 LINE L1 6248 6264 -27 239 256 35 0 chr13 36643932 36644018 -65229151 - L1MC4 LINE L1 -1339 6703 6615 2090 131 0 51 chr13 36644083 36644435 -65228734 - MER1B DNA MER1_type -5 334 1 2122 68 79 7 chr13 36645772 36646052 -65227117 - AluY SINE Alu -11 300 1 1082 224 102 41 chr13 36649253 36649548 -65223621 + MLT1A1 LTR MaLR 1 313 -52 5501 104 10 2 chr13 36649557 36650358 -65222811 - L1PA15 LINE L1 -21 6144 5338 383 281 228 5 chr13 36650366 36650590 -65222579 - L2 LINE L2 -606 2708 2435 26 0 0 0 chr13 36650896 36650922 -65222247 + AT_rich Low_complexity Low_complexity 1 26 0 306 329 2 29 chr13 36651137 36651287 -65221882 - MIR SINE MIR -62 146 22 309 245 170 0 chr13 36653003 36653109 -65220060 - MIR SINE MIR -34 228 105 330 262 0 0 chr13 36703913 36703974 -65169195 - MER81 DNA DNA -49 65 5 1017 269 112 44 chr13 36706217 36706715 -65166454 - L2 LINE L2 0 3313 2795 2564 167 16 7 chr13 36706719 36707168 -65166001 + MLT1C LTR MaLR 10 462 -5 1200 225 50 104 chr13 36707173 36707692 -65165477 - L2 LINE L2 -517 2797 2307 335 317 58 0 chr13 36709576 36709680 -65163489 - MIR SINE MIR -69 139 30 21 36 0 0 chr13 36710078 36710106 -65163063 + AT_rich Low_complexity Low_complexity 1 28 0 258 136 0 0 chr13 36710176 36710220 -65162949 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 233 342 27 77 chr13 36710489 36710787 -65162382 - L2 LINE L2 -337 2977 2695 482 118 0 118 chr13 36710900 36711104 -65162065 + (TA)n Simple_repeat Simple_repeat 1 180 0 270 0 0 0 chr13 36711224 36711254 -65161915 + (TA)n Simple_repeat Simple_repeat 2 31 0 1209 242 121 22 chr13 36712335 36712590 -65160579 - MLT1D LTR MaLR -5 500 272 369 75 0 0 chr13 36712590 36712643 -65160526 + (TG)n Simple_repeat Simple_repeat 1 53 0 1209 242 121 22 chr13 36712643 36712842 -65160327 - MLT1D LTR MaLR -233 272 1 732 277 55 8 chr13 36713312 36713547 -65159622 - MIR SINE MIR 0 262 17 22 70 0 0 chr13 36714028 36714071 -65159098 + AT_rich Low_complexity Low_complexity 1 43 0 306 292 115 0 chr13 36714814 36714910 -65158259 - L2 LINE L2 0 3313 3207 * 1346 261 77 11 chr13 36714901 36715354 -65157815 - L2 LINE L2 -985 2329 1847 1815 280 77 20 chr13 36715355 36716016 -65157153 - L2 LINE L2 -641 2673 1975 28 48 0 0 chr13 36716275 36716317 -65156852 + AT_rich Low_complexity Low_complexity 1 42 0 485 294 132 51 chr13 36716425 36716857 -65156312 - MLT1K LTR MaLR 0 588 122 224 292 69 42 chr13 36718712 36718856 -65154313 + L3 LINE CR1 1424 1571 -6 21 36 0 0 chr13 36719028 36719056 -65154113 + AT_rich Low_complexity Low_complexity 1 28 0 226 204 0 0 chr13 36719207 36719251 -65153918 - L1M1 LINE L1 -739 5561 5518 1047 271 68 39 chr13 36719823 36720395 -65152774 - HAL1b LINE L1 -512 836 248 1891 149 7 3 chr13 36720466 36720755 -65152414 - AluSx SINE Alu -22 290 1 201 208 21 0 chr13 36721193 36721241 -65151928 + T-rich Low_complexity Low_complexity 1 49 0 198 71 0 0 chr13 36721322 36721350 -65151819 + (TG)n Simple_repeat Simple_repeat 1 28 0 807 181 96 11 chr13 36721351 36721528 -65151641 - L1PB4 LINE L1 -1 6155 5964 2339 112 3 0 chr13 36722043 36722382 -65150787 - L1PB3 LINE L1 -3 6151 5812 783 273 32 9 chr13 36722766 36722982 -65150187 + MER58A DNA MER1_type 2 222 -2 189 318 57 57 chr13 36724425 36724513 -65148656 - MIR SINE MIR -19 243 156 1871 190 77 31 chr13 36724735 36725257 -65147912 - L1ME3A LINE L1 -1 6169 5624 237 235 18 127 chr13 36725320 36725401 -65147768 + MER5B DNA MER1_type 31 87 -91 1811 194 132 14 chr13 36725401 36725834 -65147335 - MER66B LTR ERV1 0 486 3 237 235 18 127 chr13 36725834 36725918 -65147251 + MER5B DNA MER1_type 87 178 0 3065 29 0 13 chr13 36726055 36726429 -65146740 - L1PA4 LINE L1 -2 6153 5785 422 276 152 0 chr13 36726789 36726934 -65146235 + MIR SINE MIR 84 250 -12 1048 209 0 15 chr13 36727543 36727744 -65145425 - AluJo SINE Alu -32 280 83 2651 142 85 6 chr13 36728698 36729218 -65143951 - L1MC1 LINE L1 0 6333 5773 2243 228 83 40 chr13 36729249 36730286 -65142883 - L1MDa LINE L1 -1889 4651 3571 * 4970 165 35 13 chr13 36730279 36731653 -65141516 - L1PA16 LINE L1 0 6166 4752 2303 88 0 26 chr13 36731653 36731961 -65141208 - AluY SINE Alu -11 300 1 4970 165 35 13 chr13 36731961 36732247 -65140922 - L1PA16 LINE L1 -1414 4752 4474 4884 217 21 49 chr13 36732221 36733848 -65139321 - L1MDa LINE L1 -2385 4155 2574 * 2387 84 0 10 chr13 36733848 36734158 -65139011 - AluY SINE Alu -4 307 1 650 156 66 25 chr13 36734177 36734299 -65138870 + Charlie3 DNA MER1_type 1 127 -2583 478 181 71 0 chr13 36734301 36734456 -65138713 - L1MDa LINE L1 -3949 2591 2426 318 186 0 0 chr13 36734456 36734515 -65138654 - AluJb SINE Alu -4 297 239 * 331 125 0 111 chr13 36734514 36734586 -65138583 - AluJb SINE Alu -155 147 84 1303 161 99 3 chr13 36734586 36734909 -65138260 - L1MDa LINE L1 -4106 2434 2081 1202 244 32 21 chr13 36734973 36735404 -65137765 - L1MDa LINE L1 -3126 3414 2979 5578 200 109 61 chr13 36735407 36736456 -65136713 - L1MDa LINE L1 -4527 2013 831 1930 129 60 60 chr13 36736456 36736820 -65136349 + THE1B LTR MaLR 1 364 0 5578 200 109 61 chr13 36736820 36737674 -65135495 - L1MDa LINE L1 -5709 831 19 2222 113 12 134 chr13 36737889 36738395 -65134774 + MLT2A1 LTR ERVL 1 444 0 24 77 0 0 chr13 36738559 36738611 -65134558 + AT_rich Low_complexity Low_complexity 1 52 0 2707 279 130 32 chr13 36738999 36740587 -65132582 - L2 LINE L2 -2 3311 1564 182 173 0 19 chr13 36740610 36740662 -65132507 + A-rich Low_complexity Low_complexity 2 52 0 2099 127 3 3 chr13 36740973 36741272 -65131897 + AluSg SINE Alu 1 299 -11 400 262 10 0 chr13 36741461 36741564 -65131605 + MLT1K LTR MaLR 484 587 -1 21 0 0 0 chr13 36741581 36741602 -65131567 + AT_rich Low_complexity Low_complexity 1 21 0 2013 107 64 0 chr13 36741653 36741934 -65131235 + AluSx SINE Alu 5 303 -9 776 240 6 6 chr13 36742957 36743136 -65130033 + MLT1A2 LTR MaLR 194 372 -2 795 251 122 43 chr13 36743142 36743536 -65129633 - L1MDb LINE L1 -5212 1197 773 4231 174 51 10 chr13 36743632 36744797 -65128372 - L1MB1 LINE L1 -1 6167 4951 816 237 61 5 chr13 36745202 36745400 -65127769 - MER58A DNA MER1_type -15 209 1 1778 110 15 157 chr13 36745494 36745895 -65127274 - LTR14B LTR ERVK 0 608 1 216 271 0 34 chr13 36746873 36746932 -65126237 + GA-rich Low_complexity Low_complexity 4 60 0 30 0 0 0 chr13 36746972 36747002 -65126167 + AT_rich Low_complexity Low_complexity 1 30 0 245 127 18 55 chr13 36747006 36747061 -65126108 - MER4D LTR ERV1 0 903 851 15796 129 53 138 chr13 36747063 36748188 -65124981 + L1MA3 LINE L1 17 1237 -6328 4221 137 19 88 chr13 36748188 36749071 -65124098 - LTR12 LTR ERV1 0 826 5 15796 129 53 138 chr13 36749071 36750964 -65122205 + L1MA3 LINE L1 1237 3291 -4274 180 0 0 0 chr13 36750964 36750984 -65122185 + (TG)n Simple_repeat Simple_repeat 1 20 0 15796 129 53 138 chr13 36750984 36752061 -65121108 + L1MA3 LINE L1 3291 3695 -3870 2418 73 0 7 chr13 36752061 36752361 -65120808 + AluY SINE Alu 1 298 -13 15796 129 53 138 chr13 36752361 36752814 -65120355 + L1MA3 LINE L1 3695 4185 -3380 1311 114 0 114 chr13 36752814 36753042 -65120127 + AluSg/x SINE Alu 82 283 -29 6509 177 30 48 chr13 36753067 36754727 -65118442 + L1MA3 LINE L1 4195 5824 -1741 541 182 91 0 chr13 36754763 36754884 -65118285 + L1MA3 LINE L1 7311 7442 -282 6798 57 11 0 chr13 36754905 36756302 -65116867 + L1PA7 LINE L1 4737 6152 -2 1209 147 56 4 chr13 36756356 36756607 -65116562 + L1MA3 LINE L1 7461 7724 0 2981 131 25 21 chr13 36756631 36756923 -65116246 + MER75 DNA T2_type 1 290 -224 1987 144 39 36 chr13 36756923 36757284 -65115885 - THE1B LTR MaLR 0 364 3 10612 104 24 37 chr13 36757286 36758886 -65114283 - THE1B-int LTR MaLR 0 1580 2 1985 128 60 28 chr13 36758887 36759240 -65113929 - THE1B LTR MaLR 0 364 1 2981 131 25 21 chr13 36759240 36759453 -65113716 + MER75 DNA T2_type 289 513 -1 1196 246 24 27 chr13 36759460 36759571 -65113598 - MER4D LTR ERV1 -36 867 757 3372 126 73 9 chr13 36759571 36760144 -65113025 + MER4B LTR ERV1 1 610 0 1196 246 24 27 chr13 36760144 36760362 -65112807 - MER4D LTR ERV1 -146 757 539 1875 195 73 47 chr13 36760365 36761061 -65112108 - LTR49 LTR ERV1 -23 572 20 1004 273 16 4 chr13 36761151 36761400 -65111769 + MIR SINE MIR 6 257 -5 1739 258 60 22 chr13 36762028 36762638 -65110531 + MER21B LTR ERV1 126 855 -76 253 297 167 36 chr13 36762918 36763056 -65110113 - L2 LINE L2 0 3313 3158 2239 120 13 0 chr13 36764794 36765103 -65108066 + AluSq SINE Alu 1 313 0 1344 278 35 51 chr13 36765136 36765980 -65107189 + L1MC4 LINE L1 7212 8042 0 24 0 0 0 chr13 36766046 36766070 -65107099 + AT_rich Low_complexity Low_complexity 1 24 0 2308 101 10 0 chr13 36766747 36767054 -65106115 + AluSg SINE Alu 1 310 0 241 215 69 169 chr13 36767162 36767292 -65105877 - L1ME3 LINE L1 -88 6074 5958 383 149 14 0 chr13 36767372 36767446 -65105723 + (TA)n Simple_repeat Simple_repeat 2 76 0 1445 239 114 42 chr13 36767496 36768327 -65104842 - L1MC5 LINE L1 -438 7523 6633 276 331 122 9 chr13 36768690 36769125 -65104044 - HAL1b LINE L1 -588 760 277 2998 166 40 26 chr13 36769368 36769987 -65103182 - L1MC1 LINE L1 0 6333 5706 1252 127 15 0 chr13 36769994 36770199 -65102970 - L1MC1 LINE L1 -693 5640 5433 604 194 219 12 chr13 36770217 36770377 -65102792 - 7SK RNA RNA 0 193 1 308 259 35 0 chr13 36770659 36770744 -65102425 + MIR SINE MIR 66 153 -109 2100 121 0 0 chr13 36771745 36772027 -65101142 + AluSx SINE Alu 1 282 -30 205 211 0 0 chr13 36772041 36772079 -65101090 + (TA)n Simple_repeat Simple_repeat 1 38 0 263 225 27 88 chr13 36772754 36772941 -65100228 + L1MC3 LINE L1 6708 6771 -1014 783 184 0 22 chr13 36772978 36773114 -65100055 + FLAM_C SINE Alu 1 133 0 1048 115 204 0 chr13 36773588 36773779 -65099390 - MER30 DNA MER1_type 0 230 1 2207 105 3 3 chr13 36773837 36774142 -65099027 + AluSx SINE Alu 1 305 -7 541 213 71 38 chr13 36775700 36775883 -65097286 + LTR50 LTR ERVL 15 203 -592 451 309 57 17 chr13 36775894 36776069 -65097100 - MIR SINE MIR -80 182 1 688 300 50 0 chr13 36776169 36776369 -65096800 - MER63A DNA MER1_type 0 210 1 378 240 145 0 chr13 36777027 36777206 -65095963 - LTR40c LTR ERVL -106 359 155 429 315 21 0 chr13 36777427 36777570 -65095599 - HERVL40 LTR ERVL -138 5392 5247 2030 264 22 52 chr13 36777934 36778627 -65094542 - HERVL40 LTR ERVL -356 5174 4503 330 357 18 4 chr13 36779091 36779318 -65093851 - HERVL40 LTR ERVL -1545 3985 3756 2620 56 0 0 chr13 36779753 36780056 -65093113 + AluY SINE Alu 1 303 -8 429 268 81 30 chr13 36780690 36780925 -65092244 - LTR40c LTR ERVL -50 415 169 2096 101 21 3 chr13 36782332 36782497 -65090672 - AluSg SINE Alu -18 292 118 477 0 0 0 chr13 36782497 36782550 -65090619 + (TG)n Simple_repeat Simple_repeat 2 54 0 2096 101 21 3 chr13 36782550 36782671 -65090498 - AluSg SINE Alu -192 118 1 357 269 160 32 chr13 36783723 36783852 -65089317 + L1ME4a LINE L1 5666 5777 -344 2147 114 3 3 chr13 36783852 36784141 -65089028 + AluSx SINE Alu 1 289 -23 213 65 0 0 chr13 36784141 36784172 -65088997 + (TA)n Simple_repeat Simple_repeat 1 31 0 357 269 160 32 chr13 36784172 36784260 -65088909 + L1ME4a LINE L1 5776 5912 -209 327 157 0 0 chr13 36784570 36784640 -65088529 + (TA)n Simple_repeat Simple_repeat 1 70 0 1712 172 59 3 chr13 36784643 36784981 -65088188 - MLT2C1 LTR ERVL -40 357 1 272 341 71 56 chr13 36785115 36785367 -65087802 + L2 LINE L2 2722 2977 -337 1013 317 38 31 chr13 36786511 36787115 -65086054 + L1MB1 LINE L1 416 922 -5381 2460 241 147 23 chr13 36787285 36787490 -65085679 + L1MB1 LINE L1 800 978 -5404 2474 72 0 3 chr13 36787490 36787797 -65085372 + AluY SINE Alu 1 306 -5 2460 241 147 23 chr13 36787797 36788658 -65084511 + L1MB1 LINE L1 978 1731 -4651 1437 113 13 22 chr13 36788658 36788888 -65084281 + L1PA10 LINE L1 5929 6156 -12 2460 241 147 23 chr13 36788888 36789090 -65084079 + L1MB1 LINE L1 1731 1907 -4475 1900 113 59 48 chr13 36789090 36789461 -65083708 + THE1C LTR MaLR 1 375 0 2460 241 147 23 chr13 36789461 36789862 -65083307 + L1MB1 LINE L1 1907 2561 -3821 4516 166 43 15 chr13 36789872 36790904 -65082265 - L1MA7 LINE L1 -31 6260 5207 1096 228 50 0 chr13 36790904 36791281 -65081888 + L1MB1 LINE L1 3101 3496 -2886 3391 22 7 0 chr13 36791401 36791813 -65081356 - L1P2 LINE L1 -335 5819 5405 2387 99 0 0 chr13 36791815 36792148 -65081021 - THE1C LTR MaLR -42 333 1 6235 190 55 76 chr13 36792148 36794145 -65079024 + L1MB1 LINE L1 3572 5526 -856 2793 200 84 10 chr13 36794146 36794862 -65078307 + L1MB1 LINE L1 5628 6396 -8 2246 132 11 11 chr13 36795098 36795478 -65077691 - L1MC1 LINE L1 -17 6316 5937 225 139 0 0 chr13 36797246 36797282 -65075887 - Alu SINE Alu -8 294 259 2148 117 7 0 chr13 36797324 36797615 -65075554 - AluSx SINE Alu -18 294 2 385 313 172 12 chr13 36798593 36798756 -65074413 - MER5A DNA MER1_type 0 189 1 1947 148 21 0 chr13 36798801 36799092 -65074077 - AluSx SINE Alu -15 297 1 1203 153 76 8 chr13 36799197 36799446 -65073723 - L1MA9 LINE L1 -2 6310 6045 1179 170 60 0 chr13 36799766 36800001 -65073168 - L1MC2 LINE L1 -490 5854 5606 387 232 67 89 chr13 36800014 36800238 -65072931 - MLT1I LTR MaLR -62 347 129 2461 155 23 46 chr13 36801289 36801442 -65071727 + MLT1C LTR MaLR 1 156 -311 2228 115 0 0 chr13 36801442 36801737 -65071432 - AluSc SINE Alu -14 295 1 2461 155 23 46 chr13 36801737 36802061 -65071108 + MLT1C LTR MaLR 156 467 0 314 235 182 8 chr13 36802248 36802380 -65070789 - MLT1I LTR MaLR -5 404 250 1384 227 48 23 chr13 36802550 36802902 -65070267 - MLT1A1 LTR MaLR 0 365 5 366 306 272 18 chr13 36803000 36803470 -65069699 - L2 LINE L2 -2 3311 2736 386 234 65 16 chr13 36803478 36803602 -65069567 - LTR16A LTR ERVL -320 130 1 677 288 40 18 chr13 36804888 36805110 -65068059 + MIR SINE MIR 10 236 -26 317 231 91 74 chr13 36805219 36805340 -65067829 - MIR SINE MIR -70 138 16 26 0 0 0 chr13 36805901 36805927 -65067242 + AT_rich Low_complexity Low_complexity 1 26 0 3991 114 71 6 chr13 36805927 36806587 -65066582 - L1PA16 LINE L1 -20 6146 5444 2413 100 120 15 chr13 36807933 36808381 -65064788 - Tigger3(Golem) DNA MER2_type -136 2893 2395 568 118 11 0 chr13 36808381 36808474 -65064695 - L1PA8 LINE L1 -2 6170 6077 4188 154 80 13 chr13 36810171 36810945 -65062224 - LTR1B LTR ERV1 0 826 1 2101 146 52 3 chr13 36811251 36811620 -65061549 + MLT1B LTR MaLR 1 387 -3 275 276 0 0 chr13 36814082 36814158 -65059011 + MIR SINE MIR 78 153 -109 2138 113 3 29 chr13 36814707 36815016 -65058153 + AluSx SINE Alu 1 301 -11 188 167 21 0 chr13 36815777 36815825 -65057344 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1668 159 4 0 chr13 36815832 36816109 -65057060 - L1PB4 LINE L1 -13 6143 5866 303 286 92 17 chr13 36817705 36817824 -65055345 - L2 LINE L2 -557 2757 2630 1464 190 80 3 chr13 36817839 36818164 -65055005 + AluJo SINE Alu 1 347 0 435 38 0 0 chr13 36818941 36818994 -65054175 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 402 289 61 9 chr13 36818995 36819109 -65054060 - L2 LINE L2 -14 3299 3180 673 154 7 59 chr13 36819224 36819360 -65053809 - FLAM_A SINE Alu -3 130 2 1637 172 123 0 chr13 36819780 36820106 -65053063 + MER47A DNA MER2_type 1 366 0 414 332 142 0 chr13 36820441 36820652 -65052517 - MIR SINE MIR -17 245 5 29 0 0 0 chr13 36820686 36820715 -65052454 + AT_rich Low_complexity Low_complexity 1 29 0 543 274 62 56 chr13 36821016 36821374 -65051795 + L1ME2 LINE L1 49 408 -6015 778 267 81 65 chr13 36821433 36822110 -65051059 + L1ME2 LINE L1 2080 2767 -4355 3268 238 91 73 chr13 36822172 36823655 -65049514 + L1ME2 LINE L1 3760 5294 -1647 2236 113 0 7 chr13 36823655 36823957 -65049212 + AluSx SINE Alu 1 300 -12 3268 238 91 73 chr13 36823957 36824589 -65048580 + L1ME2 LINE L1 5294 5913 -1028 1661 215 130 28 chr13 36824899 36825796 -65047373 + L1ME2 LINE L1 5967 6958 -1 233 220 30 10 chr13 36826424 36826524 -65046645 + GA-rich Low_complexity Low_complexity 4 105 0 4921 73 30 0 chr13 36826568 36827209 -65045960 - PABL_A LTR ERV1 0 660 1 472 230 148 19 chr13 36827523 36827780 -65045389 + LTR50 LTR ERVL 502 791 -4 737 263 25 48 chr13 36828427 36828681 -65044488 + MIR SINE MIR 10 252 -10 302 333 67 86 chr13 36828700 36828967 -65044202 + L2 LINE L2 3011 3272 0 1748 122 88 25 chr13 36829312 36829665 -65043504 + THE1C LTR MaLR 1 375 0 10789 22 0 0 chr13 36830694 36832714 -65040455 - L1PA3 LINE L1 -5 6150 4131 1884 239 126 11 chr13 36833098 36833630 -65039539 + MLT1E LTR MaLR 1 593 0 198 338 14 0 chr13 36834337 36834411 -65038758 - MIR SINE MIR -96 166 92 1445 157 27 53 chr13 36834695 36835071 -65038098 + L1MD2 LINE L1 5281 5646 -713 2110 190 91 18 chr13 36835088 36835603 -65037566 + L1MD2 LINE L1 5804 6356 -3 192 269 96 0 chr13 36835642 36835694 -65037475 - L2 LINE L2 -7 3265 3209 305 277 146 8 chr13 36838705 36838835 -65034334 + MIR SINE MIR 21 168 -94 917 190 6 11 chr13 36839196 36839375 -65033794 + MER5B DNA MER1_type 1 178 0 334 292 47 44 chr13 36839606 36839743 -65033426 - MIR3 SINE MIR -41 167 31 1839 201 57 55 chr13 36840146 36840659 -65032510 - MER67D LTR ERV1 0 514 1 537 267 11 61 chr13 36840808 36840988 -65032181 - MER5B DNA MER1_type -4 174 4 224 362 24 24 chr13 36840997 36841124 -65032045 - MIR SINE MIR -57 151 25 214 214 71 0 chr13 36841291 36841347 -65031822 + MIR SINE MIR 92 151 -111 195 223 0 63 chr13 36841349 36841524 -65031645 + (TA)n Simple_repeat Simple_repeat 1 164 0 354 205 0 49 chr13 36841535 36841720 -65031449 + (TA)n Simple_repeat Simple_repeat 1 176 0 273 176 0 0 chr13 36841733 36841784 -65031385 - HAL1 LINE L1 -971 1536 1486 351 0 0 0 chr13 36841830 36841869 -65031300 + (TA)n Simple_repeat Simple_repeat 1 39 0 2062 109 22 0 chr13 36842207 36842482 -65030687 - AluSp SINE Alu -28 285 5 868 297 81 62 chr13 36842486 36843263 -65029906 - L1M4 LINE L1 -928 5218 4427 339 215 51 0 chr13 36843263 36843342 -65029827 - HAL1 LINE L1 -952 1555 1473 694 111 83 19 chr13 36843751 36843859 -65029310 - FRAM SINE Alu -25 151 37 27 81 0 0 chr13 36844355 36844417 -65028752 + AT_rich Low_complexity Low_complexity 1 62 0 292 213 16 16 chr13 36844632 36844693 -65028476 - MIR SINE MIR -6 256 196 327 286 166 0 chr13 36845054 36845229 -65027940 + MIR SINE MIR 3 206 -56 918 322 122 12 chr13 36845585 36846249 -65026920 + L2 LINE L2 1396 2132 -1182 285 336 35 26 chr13 36846369 36846482 -65026687 - L2 LINE L2 -12 3260 3147 427 298 29 44 chr13 36846819 36847024 -65026145 - HAL1 LINE L1 0 2507 2306 333 259 129 0 chr13 36847073 36847243 -65025926 - HAL1 LINE L1 -276 2231 2040 307 185 0 0 chr13 36847271 36847325 -65025844 - LTR3b LTR ERVK 0 500 447 3005 116 61 4 chr13 36847325 36847782 -65025387 - LTR3b LTR ERVK -17 483 1 2141 265 65 14 chr13 36847782 36849463 -65023706 - HAL1 LINE L1 -507 2000 1 549 230 82 0 chr13 36850306 36850441 -65022728 - MIR SINE MIR -13 249 104 550 303 34 0 chr13 36851629 36851804 -65021365 + MIR SINE MIR 76 256 -6 611 345 72 14 chr13 36853546 36853908 -65019261 + L2 LINE L2 2150 2532 -782 227 357 36 54 chr13 36853916 36854084 -65019085 - L2 LINE L2 -8 3264 3100 762 277 36 9 chr13 36854130 36854350 -65018819 - MIR SINE MIR -24 238 13 24 0 0 0 chr13 36854700 36854724 -65018445 + AT_rich Low_complexity Low_complexity 1 24 0 42 82 0 0 chr13 36855222 36855320 -65017849 + AT_rich Low_complexity Low_complexity 1 98 0 1615 187 6 12 chr13 36855467 36855793 -65017376 + L1MB1 LINE L1 5799 6122 -46 608 302 210 8 chr13 36856074 36856455 -65016714 + L2 LINE L2 1901 2358 -956 924 321 113 30 chr13 36856463 36857136 -65016033 + L2 LINE L2 2569 3308 -5 339 225 7 4 chr13 36858377 36858452 -65014717 - AluJ/monomer SINE Alu -245 55 1 1913 110 0 0 chr13 36858656 36858911 -65014258 - AluSx SINE Alu -14 298 44 441 344 79 22 chr13 36859221 36859448 -65013721 + MIR SINE MIR 5 244 -18 2190 115 3 3 chr13 36859967 36860279 -65012890 + AluSq SINE Alu 1 312 -1 2363 243 60 41 chr13 36860571 36861354 -65011815 + L1MEc LINE L1 35 832 -5564 1451 209 73 6 chr13 36863836 36864180 -65008989 - MLT1A2 LTR MaLR -3 371 5 682 345 89 44 chr13 36864195 36864881 -65008288 + HAL1b LINE L1 61 777 -571 1601 152 16 0 chr13 36865004 36865247 -65007922 - AluSx SINE Alu -61 251 5 495 318 64 42 chr13 36865417 36865869 -65007300 + L1MEc LINE L1 2172 2586 -3629 1213 128 29 0 chr13 36866100 36866304 -65006865 + L1MA4A LINE L1 6086 6295 -8 543 331 61 20 chr13 36866758 36867154 -65006015 - L1MC/D LINE L1 -2143 5665 5254 2282 97 50 42 chr13 36868202 36868562 -65004607 - THE1B LTR MaLR -1 363 1 278 346 15 8 chr13 36869017 36869147 -65004022 + L2 LINE L2 3181 3311 -2 318 330 191 10 chr13 36869722 36869931 -65003238 + MIR SINE MIR 14 260 -2 805 134 76 41 chr13 36870183 36870355 -65002814 - MER53 DNA DNA -7 182 5 242 87 22 0 chr13 36870512 36870558 -65002611 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6648 202 25 13 chr13 36870944 36873402 -64999767 - L1MB3 LINE L1 -30 6389 3902 12694 177 35 24 chr13 36873459 36875891 -64997278 - L1MB3 LINE L1 -2888 3494 1090 2111 133 10 3 chr13 36875891 36876199 -64996970 - AluSq SINE Alu -3 310 1 12694 177 35 24 chr13 36876199 36876315 -64996854 - L1MB3 LINE L1 -5292 1090 977 2066 147 3 0 chr13 36876315 36876622 -64996547 - AluSc SINE Alu -1 308 1 12694 177 35 24 chr13 36876622 36876690 -64996479 - L1MB3 LINE L1 -5405 977 911 189 0 0 0 chr13 36876690 36876711 -64996458 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 12694 177 35 24 chr13 36876711 36877531 -64995638 - L1MB3 LINE L1 -5471 911 20 29 0 0 0 chr13 36877754 36877783 -64995386 + AT_rich Low_complexity Low_complexity 1 29 0 2408 88 0 0 chr13 36878210 36878515 -64994654 + AluY SINE Alu 1 305 -6 561 224 22 117 chr13 36879465 36879688 -64993481 - MIR SINE MIR -29 233 32 1224 283 55 25 chr13 36881682 36882081 -64991088 - LTR16C LTR ERVL 0 491 81 22 70 0 0 chr13 36882655 36882698 -64990471 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 36883013 36883035 -64990134 + AT_rich Low_complexity Low_complexity 1 22 0 1550 262 26 4 chr13 36883469 36883973 -64989196 - L1P LINE L1 -2885 3261 2747 180 97 0 0 chr13 36883995 36884026 -64989143 + L2 LINE L2 2944 2974 -340 813 267 42 84 chr13 36884185 36884541 -64988628 + L2 LINE L2 2972 3312 -1 1458 205 15 0 chr13 36885043 36885311 -64987858 - AluJo SINE Alu -25 287 16 22 35 0 0 chr13 36885311 36885340 -64987829 + AT_rich Low_complexity Low_complexity 1 29 0 1497 194 4 18 chr13 36885340 36885618 -64987551 + AluJo SINE Alu 1 274 -38 1659 120 0 0 chr13 36885644 36885903 -64987266 + L1MA2 LINE L1 6046 6304 0 15722 206 50 16 chr13 36886124 36891515 -64981654 + L1PA15 LINE L1 1247 6816 0 349 242 159 17 chr13 36891625 36891857 -64981312 - MER5C DNA MER1_type 0 324 4 1856 198 17 14 chr13 36891948 36892301 -64980868 + MLT1A1 LTR MaLR 12 365 0 416 270 63 0 chr13 36892310 36892421 -64980748 + L2 LINE L2 3196 3313 0 2326 50 7 0 chr13 36892863 36893141 -64980028 + AluY SINE Alu 1 280 -31 706 43 21 0 chr13 36893047 36893141 -64980028 + AluY SINE Alu 185 300 0 181 0 0 0 chr13 36893141 36893161 -64980008 + (CAAA)n Simple_repeat Simple_repeat 1 176 0 2591 137 74 11 chr13 36894949 36895423 -64977746 - MLT1D LTR MaLR 0 505 2 281 355 63 18 chr13 36895694 36895885 -64977284 - MIR SINE MIR -57 151 3 1249 248 81 36 chr13 36897256 36897836 -64975333 - HAL1 LINE L1 -157 2350 1745 279 203 0 0 chr13 36897836 36897895 -64975274 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 233 167 0 37 chr13 36897896 36897950 -64975219 - L1MC4 LINE L1 -1339 6703 6652 1114 266 97 7 chr13 36897977 36898432 -64974737 - HAL1 LINE L1 -794 1713 1218 934 219 105 30 chr13 36898557 36898996 -64974173 + Charlie1b DNA MER1_type 51 522 -1 1523 261 125 52 chr13 36899000 36899895 -64973274 - HAL1 LINE L1 -1461 1046 87 290 267 7 7 chr13 36899901 36900036 -64973133 + (TA)n Simple_repeat Simple_repeat 1 135 0 27 49 0 0 chr13 36900501 36900542 -64972627 + AT_rich Low_complexity Low_complexity 1 41 0 189 354 0 15 chr13 36901268 36901333 -64971836 - MER5A DNA MER1_type -86 103 40 489 317 157 3 chr13 36901953 36902259 -64970910 + L3 LINE CR1 1218 1570 -7 23 0 0 0 chr13 36902416 36902439 -64970730 + AT_rich Low_complexity Low_complexity 1 23 0 1162 241 81 30 chr13 36902461 36902831 -64970338 - MSTD LTR MaLR -7 389 1 867 166 7 0 chr13 36903001 36903146 -64970023 - MER44D DNA MER2_type 0 605 588 794 166 6 103 chr13 36903146 36903321 -64969848 - FRAM SINE Alu -17 159 2 3042 196 14 2 chr13 36903321 36903909 -64969260 - MER44D DNA MER2_type -105 600 6 1459 204 36 31 chr13 36904388 36904745 -64968424 + MLT1A1 LTR MaLR 1 359 -6 234 243 129 7 chr13 36904851 36904991 -64968178 + LTR68 LTR ERV1 9 165 -575 545 348 179 14 chr13 36905499 36906535 -64966634 + L2 LINE L2 1264 2470 -844 216 0 0 0 chr13 36907078 36907102 -64966067 + (T)n Simple_repeat Simple_repeat 1 24 0 1903 216 31 13 chr13 36907762 36908210 -64964959 - LTR40b LTR ERVL -3 459 4 3134 132 8 4 chr13 36908311 36908804 -64964365 + MER41E LTR ERV1 17 511 -1 511 203 60 22 chr13 36909212 36909394 -64963775 - L1MC5 LINE L1 -34 7927 7739 333 118 0 0 chr13 36909670 36909721 -64963448 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 938 188 12 78 chr13 36910740 36910985 -64962184 - L1PA16 LINE L1 -16 6150 5922 510 112 45 0 chr13 36911894 36911983 -64961186 - L1PA16 LINE L1 -5 6161 6069 475 284 35 55 chr13 36912057 36912258 -64960911 + MIR SINE MIR 25 221 -41 429 285 233 5 chr13 36913786 36913979 -64959190 + MIR SINE MIR 20 256 -6 644 153 16 32 chr13 36914377 36914501 -64958668 - LTR54B LTR ERV1 -363 135 14 660 118 0 0 chr13 36915058 36915160 -64958009 + L1P3 LINE L1 733 834 -5041 1622 103 150 228 chr13 36915160 36915788 -64957381 + LTR12 LTR ERV1 3 581 -133 23931 144 16 15 chr13 36915789 36918065 -64955104 + L1P3 LINE L1 882 3156 -3305 828 109 16 0 chr13 36918065 36918184 -64954985 + L1PA7 LINE L1 6017 6146 -8 23931 144 16 15 chr13 36918184 36920537 -64952632 + L1P3 LINE L1 3156 5514 -947 1897 246 66 36 chr13 36920542 36920981 -64952188 - HERV15 LTR ERV1 -3686 5049 4581 2208 88 0 7 chr13 36920981 36921296 -64951873 - AluY SINE Alu 0 313 1 1897 246 66 36 chr13 36921296 36921523 -64951646 - HERV15 LTR ERV1 -4154 4581 4362 * 6164 290 33 47 chr13 36921508 36924126 -64949043 - HERV15 LTR ERV1 -5843 2583 1 622 205 136 61 chr13 36924126 36924530 -64948639 - LTR30 LTR ERV1 0 596 190 29 28 0 0 chr13 36924883 36924919 -64948250 + AT_rich Low_complexity Low_complexity 1 36 0 357 266 25 118 chr13 36925283 36925520 -64947649 - L3 LINE CR1 -303 1274 1060 246 291 66 60 chr13 36926797 36926948 -64946221 + L2 LINE L2 1752 1903 -1411 741 280 46 8 chr13 36927458 36927697 -64945472 - MIR SINE MIR 0 262 15 307 193 36 86 chr13 36928155 36928172 -64944997 - L1MA10 LINE L1 -2 6332 6316 381 239 77 81 chr13 36928172 36928464 -64944705 - L1ME1 LINE L1 -14 6152 5873 * 1371 223 43 8 chr13 36928462 36928970 -64944199 - L1ME1 LINE L1 -718 5466 4943 242 218 0 18 chr13 36929743 36929798 -64943371 + (TG)n Simple_repeat Simple_repeat 1 54 0 451 303 61 35 chr13 36930669 36930867 -64942302 - MIR SINE MIR -39 223 21 260 290 21 11 chr13 36932189 36932282 -64940887 + (TATATG)n Simple_repeat Simple_repeat 5 98 0 233 168 10 109 chr13 36932285 36932386 -64940783 + L1MC4 LINE L1 6615 6705 -1337 322 237 44 26 chr13 36932386 36932500 -64940669 + (TATATG)n Simple_repeat Simple_repeat 6 121 0 2534 133 29 11 chr13 36932588 36933040 -64940129 - L1MA8 LINE L1 0 6291 5832 407 289 52 0 chr13 36933824 36933959 -64939210 - MIR3 SINE MIR -20 188 47 317 349 35 30 chr13 36935114 36935283 -64937886 + MIR SINE MIR 76 245 -17 432 217 78 55 chr13 36935386 36935603 -64937566 - MER112 DNA MER1_type -38 222 1 248 193 0 244 chr13 36935738 36935791 -64937378 + MIR SINE MIR 105 107 -155 2222 119 0 0 chr13 36935791 36936084 -64937085 + AluSq SINE Alu 1 293 -20 248 193 0 244 chr13 36936084 36936165 -64937004 + MIR SINE MIR 107 206 -56 223 220 242 77 chr13 36937863 36938045 -64935124 - MIR SINE MIR -50 212 1 379 276 163 26 chr13 36938329 36938593 -64934576 + MLT1L LTR MaLR 316 615 0 480 299 116 0 chr13 36939061 36939285 -64933884 - MIR SINE MIR -6 256 7 2296 86 13 0 chr13 36939616 36939918 -64933251 + AluSp SINE Alu 1 306 -7 484 290 73 13 chr13 36940031 36940334 -64932835 + L1ME4a LINE L1 5687 6007 -114 26 64 0 0 chr13 36940341 36940388 -64932781 + AT_rich Low_complexity Low_complexity 1 47 0 2160 156 30 28 chr13 36940558 36940989 -64932180 + MSTB1 LTR MaLR 1 432 0 338 309 50 83 chr13 36941206 36941569 -64931600 - L2 LINE L2 -136 3177 2827 2196 80 58 0 chr13 36943652 36943928 -64929241 - AluSg SINE Alu -18 292 1 276 141 56 14 chr13 36943935 36944006 -64929163 - L1MD3 LINE L1 0 7995 7922 476 306 102 24 chr13 36944302 36944508 -64928661 + MIR SINE MIR 28 249 -13 2519 185 67 45 chr13 36944551 36945177 -64927992 + MER82 DNA MER2_type 1 640 -13 788 291 26 0 chr13 36945450 36945677 -64927492 + MIR SINE MIR 1 233 -29 2163 120 0 3 chr13 36945893 36946343 -64926826 - AluSg1 SINE Alu 0 449 1 208 333 90 0 chr13 36946356 36946434 -64926735 + L2 LINE L2 3229 3313 0 196 316 0 18 chr13 36946642 36946699 -64926470 + MER5A DNA MER1_type 46 101 -88 375 298 8 53 chr13 36946797 36946928 -64926241 + L2 LINE L2 3189 3313 0 400 262 83 30 chr13 36947011 36947179 -64925990 - MER5A DNA MER1_type -6 183 7 1996 167 37 31 chr13 36947307 36947855 -64925314 - MLT2A2 LTR ERVL 0 554 1 9134 160 9 5 chr13 36949256 36950982 -64922187 - L1P3 LINE L1 -2692 3769 2038 741 228 6 6 chr13 36950980 36951147 -64922022 - L1P3 LINE L1 -5708 167 1 * 2034 143 10 0 chr13 36951152 36951483 -64921686 - AluSx SINE Alu 0 334 1 2050 262 92 44 chr13 36952029 36952506 -64920663 - HAL1 LINE L1 -414 2093 1640 2555 175 7 85 chr13 36952506 36953116 -64920053 + MER68 LTR ERV1 1 562 0 2050 262 92 44 chr13 36953116 36953948 -64919221 - HAL1 LINE L1 -867 1640 722 340 294 96 51 chr13 36953984 36954161 -64919008 - HAL1 LINE L1 -1885 622 438 552 282 23 53 chr13 36954303 36954565 -64918604 - HAL1 LINE L1 -2250 257 4 353 250 0 0 chr13 36954600 36954672 -64918497 + L2 LINE L2 3234 3305 -8 220 232 11 11 chr13 36954672 36954767 -64918402 + (TA)n Simple_repeat Simple_repeat 2 96 0 303 296 177 58 chr13 36954846 36954978 -64918191 - MLT1K LTR MaLR -63 525 410 1837 147 26 57 chr13 36954978 36955365 -64917804 - THE1C LTR MaLR 0 375 1 303 296 177 58 chr13 36955365 36955543 -64917626 - MLT1K LTR MaLR -178 410 178 264 237 0 82 chr13 36955553 36955650 -64917519 + MER58 DNA MER1_type 11 99 -2321 248 180 0 33 chr13 36955667 36955728 -64917441 + MER58 DNA MER1_type 2328 2386 -34 276 273 23 0 chr13 36956339 36956427 -64916742 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr13 36956427 36956448 -64916721 + (TA)n Simple_repeat Simple_repeat 1 21 0 332 266 179 23 chr13 36956674 36956892 -64916277 + L1MC4 LINE L1 5597 5848 -1960 2163 127 31 14 chr13 36956895 36957252 -64915917 + THE1B LTR MaLR 1 426 0 269 247 25 0 chr13 36957364 36957445 -64915724 + L1MC4 LINE L1 6617 6699 -1343 578 291 83 66 chr13 36957521 36958229 -64914940 + L1MC4 LINE L1 6067 6871 -1022 756 116 0 16 chr13 36958229 36958350 -64914819 + L1PA11 LINE L1 6053 6171 -3 1141 209 24 14 chr13 36958399 36958695 -64914474 - L1MA4 LINE L1 -7 6293 5995 261 215 15 0 chr13 36958753 36958818 -64914351 + L1MC5 LINE L1 7000 7065 -896 1739 189 52 6 chr13 36958906 36959255 -64913914 + MLT1A1 LTR MaLR 1 365 0 524 255 7 0 chr13 36960432 36960581 -64912588 + L1ME2 LINE L1 6008 6157 -7 454 250 8 8 chr13 36960630 36960758 -64912411 + MER103 DNA DNA 38 165 -1 765 296 79 10 chr13 36961197 36961604 -64911565 - LTR16A LTR ERVL -1 449 16 282 198 360 0 chr13 36962353 36962439 -64910730 - L2 LINE L2 0 3272 3156 562 261 122 21 chr13 36962547 36962735 -64910434 - MIR SINE MIR 0 262 56 629 336 73 13 chr13 36963049 36963287 -64909882 - MIR SINE MIR -8 254 1 535 143 29 149 chr13 36967865 36968040 -64905129 - MER5B DNA MER1_type -23 155 2 765 216 33 22 chr13 36968049 36968230 -64904939 + MER5A DNA MER1_type 1 183 -6 308 290 11 21 chr13 36970100 36970193 -64902976 - MIR SINE MIR -114 148 57 219 400 83 0 chr13 36970301 36970446 -64902723 - MIR SINE MIR -63 145 18 249 167 372 26 chr13 36970580 36970658 -64902511 - MER5B DNA MER1_type -73 105 1 2239 85 3 0 chr13 36971148 36971431 -64901738 - AluSp SINE Alu -25 288 5 627 234 151 26 chr13 36972186 36972750 -64900419 - L1MEc LINE L1 -3680 2449 1854 377 295 60 44 chr13 36972949 36973362 -64899807 - L1MEc LINE L1 -4748 1562 1143 1918 69 35 0 chr13 36973412 36973672 -64899497 - L1PA11 LINE L1 -3 6171 5903 348 289 62 62 chr13 36973677 36973902 -64899267 - L1MEc LINE L1 -5044 1075 851 2482 56 0 13 chr13 36974056 36974359 -64898810 - AluY SINE Alu -12 299 1 485 309 109 45 chr13 36975518 36975894 -64897275 + L1MC/D LINE L1 5255 5654 -2154 1404 234 13 0 chr13 36976043 36976350 -64896819 + Tigger7 DNA MER2_type 11 321 -412 829 188 18 6 chr13 36976368 36976533 -64896636 + Tigger7 DNA MER2_type 2421 2587 0 217 238 0 0 chr13 36976657 36976699 -64896470 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1854 119 0 0 chr13 36976809 36977069 -64896100 - AluY SINE Alu -5 306 47 565 244 15 0 chr13 36977143 36977278 -64895891 + Tigger7 DNA MER2_type 1 137 -2350 400 75 0 0 chr13 36977280 36977333 -64895836 - AluY SINE Alu -257 53 1 760 232 18 0 chr13 36978439 36978603 -64894566 + MIR SINE MIR 12 178 -84 409 296 210 18 chr13 36978799 36979137 -64894032 - L1M4 LINE L1 -884 5262 4860 2240 115 0 0 chr13 36980635 36980940 -64892229 - AluSx SINE Alu -7 305 1 1982 160 3 0 chr13 36981477 36981771 -64891398 - AluJb SINE Alu -15 297 3 2459 65 0 23 chr13 36984781 36985091 -64888078 + AluY SINE Alu 1 303 -8 180 0 0 0 chr13 36985091 36985111 -64888058 + (TA)n Simple_repeat Simple_repeat 2 21 0 210 369 8 25 chr13 36985224 36985346 -64887823 - L2 LINE L2 -212 3060 2941 28 0 0 0 chr13 36985989 36986017 -64887152 + AT_rich Low_complexity Low_complexity 1 28 0 203 333 13 0 chr13 36987024 36987102 -64886067 + GA-rich Low_complexity Low_complexity 2 80 0 2362 39 3 0 chr13 36987749 36988069 -64885100 + L1PA3 LINE L1 5854 6174 0 239 128 0 0 chr13 36988088 36988135 -64885034 + Charlie5 DNA MER1_type 2445 2491 -121 873 90 135 0 chr13 36988460 36988593 -64884576 + AluSp SINE Alu 137 287 -26 335 306 100 19 chr13 36991006 36991166 -64882003 - L1ME4a LINE L1 -193 5928 5756 3610 179 61 16 chr13 36991418 36992458 -64880711 - L1MB4 LINE L1 -3 6177 5093 1008 231 140 20 chr13 36993604 36993954 -64879215 - LTR40b LTR ERVL 0 462 71 712 263 115 48 chr13 36994299 36994465 -64878704 + L2 LINE L2 2958 3112 -201 2179 104 3 0 chr13 36994465 36994752 -64878417 - AluSq SINE Alu -25 288 1 712 263 115 48 chr13 36994752 36994916 -64878253 + L2 LINE L2 3112 3310 -3 284 342 42 8 chr13 36994919 36995039 -64878130 - MIR SINE MIR -130 132 9 666 227 66 10 chr13 36995738 36995936 -64877233 - MER3 DNA MER1_type 0 209 1 2463 184 64 14 chr13 36996506 36997081 -64876088 - MER67C LTR ERV1 -1 709 106 4866 74 50 9 chr13 36997093 36997833 -64875336 - L1PA13 LINE L1 -19 6144 5375 2017 133 6 22 chr13 36997840 36998157 -64875012 - AluJo SINE Alu 0 312 1 322 335 100 30 chr13 37001573 37001668 -64871501 - L2 LINE L2 -8 3305 3218 2301 100 108 8 chr13 37001668 37002057 -64871112 - MSTA LTR MaLR 0 428 1 322 335 100 30 chr13 37002057 37002262 -64870907 - L2 LINE L2 -95 3218 2984 282 372 115 9 chr13 37002656 37002987 -64870182 + L2 LINE L2 2400 2765 -549 429 329 176 16 chr13 37003212 37003701 -64869468 + L2 LINE L2 2279 2845 -469 388 310 81 83 chr13 37003731 37003884 -64869285 + L2 LINE L2 2926 3078 -194 1742 199 11 32 chr13 37003884 37004181 -64868988 + MLT1A1 LTR MaLR 1 290 -75 2220 115 3 0 chr13 37004181 37004477 -64868692 - AluSc SINE Alu -12 297 1 1742 199 11 32 chr13 37004477 37004550 -64868619 + MLT1A1 LTR MaLR 290 363 -2 388 310 81 83 chr13 37004550 37004744 -64868425 + L2 LINE L2 3078 3272 0 21 57 0 0 chr13 37005723 37005758 -64867411 + AT_rich Low_complexity Low_complexity 1 35 0 1705 175 91 32 chr13 37006252 37006693 -64866476 - MLT1C LTR MaLR 0 467 1 590 226 67 6 chr13 37007898 37008062 -64865107 + MER5B DNA MER1_type 5 178 0 345 255 43 80 chr13 37008552 37008740 -64864429 + L1M4 LINE L1 4490 4670 -1476 1525 216 34 78 chr13 37009178 37009706 -64863463 - MLT1D LTR MaLR 0 505 1 902 253 63 66 chr13 37010960 37011217 -64861952 + MIR SINE MIR 2 252 -10 807 290 137 44 chr13 37011556 37012488 -64860681 - L2 LINE L2 -1 3312 2283 420 307 95 5 chr13 37012807 37012996 -64860173 + MIR SINE MIR 49 254 -8 228 136 0 45 chr13 37013924 37013968 -64859201 + Charlie8 DNA MER1_type 34 75 -2342 252 302 0 0 chr13 37014390 37014453 -64858716 + LTR67 LTR ERVL 105 167 -390 199 283 111 30 chr13 37015244 37015343 -64857826 - MIR SINE MIR -70 192 86 1083 143 63 49 chr13 37015435 37015658 -64857511 - MER7A DNA MER2_type -121 225 2 456 215 37 0 chr13 37015662 37015769 -64857400 + Charlie1b DNA MER1_type 94 204 -319 204 40 0 0 chr13 37015828 37015853 -64857316 + (T)n Simple_repeat Simple_repeat 1 25 0 253 253 36 0 chr13 37016388 37016471 -64856698 + L1MC5 LINE L1 7840 7925 -36 421 259 118 15 chr13 37016667 37016802 -64856367 - MIR SINE MIR -111 151 3 2960 180 22 2 chr13 37018095 37018634 -64854535 - MER44D DNA MER2_type 0 605 1 409 214 9 9 chr13 37019385 37019497 -64853672 - L1MA7 LINE L1 -2 6289 6178 423 261 11 0 chr13 37019957 37020045 -64853124 + MER5B DNA MER1_type 89 177 -1 2165 112 41 22 chr13 37020250 37020617 -64852552 - THE1C LTR MaLR -1 374 1 349 384 0 0 chr13 37020837 37020949 -64852220 + MIR SINE MIR 34 145 -63 357 24 0 0 chr13 37022486 37022528 -64850641 + (TG)n Simple_repeat Simple_repeat 2 43 0 303 352 88 11 chr13 37023063 37023245 -64849924 - MIR SINE MIR -26 236 41 233 111 67 0 chr13 37024595 37024640 -64848529 + L1MC5 LINE L1 7603 7650 -311 511 201 34 20 chr13 37024802 37024951 -64848218 + L1MC5 LINE L1 7710 7860 -101 512 259 119 49 chr13 37024999 37025343 -64847826 + L1ME4a LINE L1 5743 6110 -11 210 37 0 0 chr13 37025536 37025563 -64847606 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 411 286 28 11 chr13 37027423 37027620 -64845549 - L1MEc LINE L1 -5307 1721 1375 468 325 52 11 chr13 37028012 37028280 -64844889 - L1MEc LINE L1 -5989 1149 871 1278 225 66 16 chr13 37028402 37028904 -64844265 - L1ME1 LINE L1 -5 6161 5506 21 0 0 0 chr13 37029244 37029265 -64843904 + AT_rich Low_complexity Low_complexity 1 21 0 1459 277 80 22 chr13 37029511 37030236 -64842933 + L1MC4a LINE L1 5260 6026 -1782 316 278 19 0 chr13 37031049 37031157 -64842012 + L1M4 LINE L1 4549 4658 -1488 3469 174 27 6 chr13 37031859 37032380 -64840789 - LTR51 LTR ERV1 0 671 132 180 0 0 0 chr13 37032380 37032400 -64840769 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3469 174 27 6 chr13 37032400 37032535 -64840634 - LTR51 LTR ERV1 -539 132 1 228 59 0 0 chr13 37032868 37032902 -64840267 - MLT1D LTR MaLR 0 626 593 4449 135 88 40 chr13 37032903 37033971 -64839198 + MER52C LTR ERV1 1 1278 0 677 171 16 0 chr13 37033971 37034093 -64839076 - MLT1D LTR MaLR -34 471 348 841 261 193 20 chr13 37034094 37034488 -64838681 - L2 LINE L2 -381 2933 2472 279 78 47 31 chr13 37034506 37034570 -64838599 + GA-rich Low_complexity Low_complexity 5 69 0 558 241 0 0 chr13 37035118 37035263 -64837906 + (TA)n Simple_repeat Simple_repeat 2 146 0 359 338 48 28 chr13 37035323 37035468 -64837701 + L2 LINE L2 3125 3272 0 352 315 19 49 chr13 37035498 37035660 -64837509 + MER5A DNA MER1_type 4 160 -29 205 247 68 123 chr13 37035533 37035695 -64837474 - MER5A DNA MER1_type -27 162 10 * 263 253 40 0 chr13 37036965 37037040 -64836129 + MER103 DNA DNA 43 120 -46 941 176 0 35 chr13 37037060 37037259 -64835910 - L1MA9 LINE L1 0 6312 6121 362 301 158 5 chr13 37037546 37037755 -64835414 - MIR SINE MIR -2 260 20 312 27 0 0 chr13 37038391 37038428 -64834741 + (TG)n Simple_repeat Simple_repeat 2 38 0 496 268 163 21 chr13 37039809 37040019 -64833150 + MIR SINE MIR 15 249 -13 195 170 0 0 chr13 37040051 37040098 -64833071 + (TTG)n Simple_repeat Simple_repeat 1 47 0 618 235 8 15 chr13 37040110 37040242 -64832927 + MER58A DNA MER1_type 1 131 0 229 250 0 0 chr13 37040242 37040291 -64832878 + MER58A DNA MER1_type 172 220 -4 185 260 228 63 chr13 37042714 37042841 -64830328 - MIR3 SINE MIR -23 185 38 2271 101 0 7 chr13 37042960 37043266 -64829903 + AluSg SINE Alu 1 304 -6 298 354 0 0 chr13 37044090 37044186 -64828983 - MIR SINE MIR -117 145 50 661 313 48 10 chr13 37044251 37044459 -64828710 + MIR SINE MIR 31 246 -16 2439 264 39 62 chr13 37046506 37047880 -64825289 + L1MEc LINE L1 955 2296 -4100 1167 193 5 23 chr13 37047897 37048115 -64825054 + AluJb SINE Alu 67 280 -32 192 40 0 0 chr13 37048115 37048140 -64825029 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2470 49 0 3 chr13 37048981 37049285 -64823884 - AluY SINE Alu -8 303 1 300 224 92 92 chr13 37049582 37049756 -64823413 + MIR SINE MIR 33 206 -56 1693 158 10 43 chr13 37049821 37050125 -64823044 + AluJo SINE Alu 12 305 -7 473 261 35 26 chr13 37050125 37050240 -64822929 + L2 LINE L2 3198 3313 0 27 0 0 0 chr13 37050330 37050357 -64822812 + AT_rich Low_complexity Low_complexity 1 27 0 305 295 13 0 chr13 37050493 37050571 -64822598 + MIR SINE MIR 2 80 -182 2148 102 0 3 chr13 37050571 37050884 -64822285 + L1P3 LINE L1 5340 5651 -503 289 274 14 0 chr13 37051020 37051093 -64822076 - AluYa8 SINE Alu -96 204 131 2288 88 3 0 chr13 37052351 37052634 -64820535 + AluSq SINE Alu 1 284 -29 2323 114 0 0 chr13 37052638 37052944 -64820225 + AluSg SINE Alu 3 308 -2 315 328 0 0 chr13 37053007 37053126 -64820043 + L1ME LINE L1 5533 5651 -470 296 245 41 95 chr13 37053129 37053218 -64819951 + L1MC1 LINE L1 5611 5690 -2118 2209 102 159 8 chr13 37053218 37053590 -64819579 - MSTA LTR MaLR 0 428 1 296 245 41 95 chr13 37053590 37053647 -64819522 + L1MC1 LINE L1 5690 5749 -2059 1993 224 145 6 chr13 37053653 37054171 -64818998 + MLT1G LTR MaLR 1 590 0 360 156 0 52 chr13 37054178 37054255 -64818914 + L1MC1 LINE L1 5760 5832 -1976 295 151 2 17 chr13 37054275 37054342 -64818827 + L1MC1 LINE L1 6266 6324 -9 406 270 21 42 chr13 37054366 37054522 -64818647 + MLT1H1 LTR MaLR 1 158 -393 1811 169 91 20 chr13 37054522 37055233 -64817936 + MER21A LTR ERV1 1 925 -6 713 198 148 77 chr13 37055239 37055618 -64817551 + MLT1H1 LTR MaLR 150 555 0 840 188 3 6 chr13 37056121 37056410 -64816759 - MLT1A1 LTR MaLR 0 365 1 385 330 42 50 chr13 37056558 37056819 -64816350 - L2 LINE L2 -173 3099 2841 196 143 0 77 chr13 37056871 37056915 -64816254 + L2 LINE L2 3219 3298 -15 1984 180 12 0 chr13 37056937 37057281 -64815888 + MER7A DNA MER2_type 1 346 0 441 0 0 0 chr13 37057281 37057330 -64815839 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 2078 139 0 0 chr13 37058314 37058615 -64814554 + AluJo SINE Alu 1 301 0 1063 147 17 97 chr13 37059020 37059258 -64813911 + MER20 DNA MER1_type 1 219 0 1355 220 16 35 chr13 37059371 37059684 -64813485 + MLT1A1 LTR MaLR 1 307 -58 26 50 0 0 chr13 37059960 37060000 -64813169 + AT_rich Low_complexity Low_complexity 1 40 0 259 263 23 2 chr13 37060523 37060658 -64812511 - MER45A DNA AcHobo -8 170 3 778 241 65 28 chr13 37062121 37062337 -64810832 - MIR SINE MIR -30 232 9 202 253 38 38 chr13 37062416 37062495 -64810674 - L2 LINE L2 -466 2848 2770 22 0 0 0 chr13 37062502 37062524 -64810645 + AT_rich Low_complexity Low_complexity 1 22 0 1167 142 55 18 chr13 37062584 37062803 -64810366 + AluJb SINE Alu 81 307 -5 428 118 26 0 chr13 37063098 37063174 -64809995 + L1MB2 LINE L1 6087 6164 -7 810 214 20 25 chr13 37064018 37064214 -64808955 + AluJo SINE Alu 106 300 -12 246 32 0 0 chr13 37064355 37064386 -64808783 + (TTG)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr13 37065696 37065724 -64807445 + AT_rich Low_complexity Low_complexity 1 28 0 327 217 29 0 chr13 37065965 37066034 -64807135 + MIR SINE MIR 2 72 -190 1227 276 100 32 chr13 37067521 37068051 -64805118 + HAL1 LINE L1 1 566 -1941 882 288 97 4 chr13 37068053 37068320 -64804849 + HAL1 LINE L1 590 881 -1626 1525 228 172 27 chr13 37068371 37068403 -64804766 + HAL1 LINE L1 1020 1046 -1461 2032 114 0 84 chr13 37068403 37068735 -64804434 + AluSq SINE Alu 1 304 -9 1525 228 172 27 chr13 37068735 37069399 -64803770 + HAL1 LINE L1 1046 1817 -690 675 216 111 33 chr13 37069444 37069625 -64803544 - MER3 DNA MER1_type -14 195 1 311 148 33 0 chr13 37069961 37070022 -64803147 - L1MB1 LINE L1 -1 6167 6105 754 234 130 29 chr13 37070347 37070723 -64802446 + HAL1 LINE L1 2025 2438 -69 376 229 236 14 chr13 37072450 37072594 -64800575 - MIR3 SINE MIR -3 205 30 665 161 34 0 chr13 37073103 37073262 -64799907 + L1M4 LINE L1 5610 5777 -401 442 286 84 0 chr13 37073538 37073716 -64799453 + MER46C DNA MER2_type 127 319 -19 1308 170 0 0 chr13 37073954 37074172 -64798997 - L1PA16 LINE L1 -9 6157 5940 249 239 62 80 chr13 37074444 37074557 -64798612 - MIR SINE MIR -54 208 98 234 279 154 0 chr13 37074952 37075153 -64798016 + L1M4 LINE L1 4383 4614 -1532 551 266 81 12 chr13 37075484 37075657 -64797512 - MLT1I LTR MaLR -207 202 18 477 290 75 28 chr13 37076482 37076737 -64796432 - L1ME LINE L1 -303 5818 5552 354 66 75 9 chr13 37078738 37078844 -64794325 + (TA)n Simple_repeat Simple_repeat 2 114 0 21 36 0 0 chr13 37078923 37078951 -64794218 + AT_rich Low_complexity Low_complexity 1 28 0 846 147 6 38 chr13 37079019 37079176 -64793993 - MER46A DNA MER2_type -84 152 1 21 0 0 0 chr13 37081724 37081745 -64791424 + AT_rich Low_complexity Low_complexity 1 21 0 565 258 33 39 chr13 37081905 37082087 -64791082 - MIR SINE MIR -50 212 32 22 0 0 0 chr13 37083307 37083329 -64789840 + AT_rich Low_complexity Low_complexity 1 22 0 234 238 88 38 chr13 37083672 37083752 -64789417 + L2 LINE L2 3185 3268 -4 4174 93 27 36 chr13 37085196 37085568 -64787601 + L1PA11 LINE L1 5544 5909 -265 2218 87 21 0 chr13 37085568 37085855 -64787314 + AluY SINE Alu 1 293 -18 4174 93 27 36 chr13 37085855 37086119 -64787050 + L1PA11 LINE L1 5909 6174 0 299 292 22 22 chr13 37087482 37087571 -64785598 + L2 LINE L2 3142 3230 -42 260 273 114 11 chr13 37087619 37087707 -64785462 - MIR SINE MIR -70 138 42 27 49 0 0 chr13 37088013 37088054 -64785115 + AT_rich Low_complexity Low_complexity 1 41 0 225 191 0 0 chr13 37088290 37088337 -64784832 - MLT2F LTR ERVL -10 653 607 3056 41 0 23 chr13 37088368 37088758 -64784411 + L1PA5 LINE L1 5763 6143 -11 29 0 0 0 chr13 37088758 37088787 -64784382 + AT_rich Low_complexity Low_complexity 1 29 0 831 194 90 93 chr13 37088788 37089098 -64784071 - MLT2C1 LTR ERVL -65 332 24 1055 278 111 44 chr13 37089574 37090504 -64782665 + L1ME3A LINE L1 5176 6159 -11 1916 118 0 0 chr13 37090720 37090975 -64782194 + AluSq SINE Alu 1 255 -58 2396 97 0 0 chr13 37091247 37091555 -64781614 + AluSg SINE Alu 1 308 -2 676 272 171 9 chr13 37091925 37092485 -64780684 + L1M4 LINE L1 4258 4919 -1227 231 217 157 24 chr13 37093253 37093336 -64779833 + Charlie7 DNA MER1_type 8 101 -2511 * 370 188 38 45 chr13 37093320 37093453 -64779716 + Charlie7 DNA MER1_type 2427 2558 -54 396 0 0 0 chr13 37094072 37094116 -64779053 + (TG)n Simple_repeat Simple_repeat 1 44 0 1710 162 17 30 chr13 37094436 37094738 -64778431 + AluJo SINE Alu 1 298 -14 2112 101 42 0 chr13 37094979 37095266 -64777903 + AluSx SINE Alu 1 299 -13 231 213 27 40 chr13 37095646 37095721 -64777448 + MIR SINE MIR 135 208 -54 537 308 133 0 chr13 37095793 37096004 -64777165 + MIR SINE MIR 5 243 -19 1437 155 4 69 chr13 37096004 37096281 -64776888 - MLT2B3 LTR ERVL -2 552 294 1707 160 24 3 chr13 37096373 37096661 -64776508 - MLT2B3 LTR ERVL -260 294 1 378 354 193 17 chr13 37097130 37097907 -64775262 - L2 LINE L2 -548 2766 1853 526 292 25 0 chr13 37097928 37098048 -64775121 - L2 LINE L2 0 3313 3191 212 286 77 22 chr13 37098055 37098146 -64775023 - L2 LINE L2 -1517 1797 1702 252 0 0 0 chr13 37098675 37098703 -64774466 + (T)n Simple_repeat Simple_repeat 1 28 0 984 150 5 78 chr13 37098722 37098915 -64774254 - AluJb SINE Alu -133 179 1 1345 122 61 0 chr13 37098947 37099177 -64773992 - MSTB1 LTR MaLR 0 432 189 912 184 60 0 chr13 37099291 37099492 -64773677 - MSTB1 LTR MaLR -212 214 2 570 173 30 18 chr13 37100776 37100944 -64772225 + CT-rich Low_complexity Low_complexity 2 171 0 2181 131 0 0 chr13 37100949 37101261 -64771908 - AluSx SINE Alu 0 312 1 259 230 48 32 chr13 37101383 37101509 -64771660 - L1MEd LINE L1 -5951 168 41 370 274 32 54 chr13 37101516 37101702 -64771467 + LTR16C LTR ERVL 220 401 -90 7366 39 1 1 chr13 37102049 37103316 -64769853 + L1PA4 LINE L1 4890 6155 0 308 208 14 28 chr13 37104283 37104355 -64768814 - L2 LINE L2 -46 3267 3197 270 0 0 0 chr13 37105024 37105054 -64768115 + (TG)n Simple_repeat Simple_repeat 2 31 0 1901 158 39 6 chr13 37105107 37105443 -64767726 + MER7A DNA MER2_type 1 345 -1 187 173 39 0 chr13 37105479 37105531 -64767638 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 288 0 0 0 chr13 37105568 37105600 -64767569 + (TG)n Simple_repeat Simple_repeat 1 32 0 24 77 0 0 chr13 37105875 37105927 -64767242 + AT_rich Low_complexity Low_complexity 1 52 0 28 0 0 0 chr13 37107535 37107563 -64765606 + AT_rich Low_complexity Low_complexity 1 28 0 212 224 86 0 chr13 37107860 37107918 -64765251 - L3 LINE CR1 -176 1401 1339 1044 138 28 18 chr13 37109047 37109265 -64763904 - L1MA8 LINE L1 0 6291 6072 1387 117 5 9 chr13 37109266 37109489 -64763680 - L1MA7 LINE L1 -268 6023 5802 1796 161 0 14 chr13 37110653 37110944 -64762225 + AluJo SINE Alu 11 297 -15 544 262 102 36 chr13 37112370 37112595 -64760574 - MIR SINE MIR -19 243 4 253 309 126 80 chr13 37113071 37113378 -64759791 + L2 LINE L2 2840 3172 -100 1002 218 23 5 chr13 37113378 37113598 -64759571 + MER58A DNA MER1_type 1 224 0 253 309 126 80 chr13 37113598 37113704 -64759465 + L2 LINE L2 3172 3272 0 731 189 8 0 chr13 37121286 37121408 -64751761 + FLAM_C SINE Alu 1 123 -10 333 0 0 0 chr13 37122530 37122567 -64750602 + (CA)n Simple_repeat Simple_repeat 2 38 0 2322 108 0 13 chr13 37122589 37122903 -64750266 + AluSx SINE Alu 1 310 -2 227 227 15 0 chr13 37123670 37123736 -64749433 + GA-rich Low_complexity Low_complexity 3 69 0 21 0 0 0 chr13 37124630 37124651 -64748518 + AT_rich Low_complexity Low_complexity 1 21 0 392 213 56 69 chr13 37124854 37125070 -64748099 - L1ME4a LINE L1 -18 6103 5891 185 264 14 0 chr13 37125091 37125163 -64748006 + (TA)n Simple_repeat Simple_repeat 1 73 0 2099 103 28 0 chr13 37127607 37127897 -64745272 + AluSx SINE Alu 1 298 -14 203 167 0 0 chr13 37128085 37128121 -64745048 + T-rich Low_complexity Low_complexity 4 39 0 31 26 0 0 chr13 37128142 37128180 -64744989 + AT_rich Low_complexity Low_complexity 1 38 0 1655 132 28 68 chr13 37129557 37129882 -64743287 - AluJo SINE Alu 0 312 1 23 0 0 0 chr13 37129936 37129959 -64743210 + AT_rich Low_complexity Low_complexity 1 23 0 2049 115 31 0 chr13 37130622 37130908 -64742261 + AluSx SINE Alu 1 295 -17 1906 177 3 3 chr13 37130921 37131232 -64741937 + AluSx SINE Alu 1 311 -1 1141 133 90 5 chr13 37131291 37131502 -64741667 - L1MD1 LINE L1 -5 6237 6009 1024 99 0 0 chr13 37131502 37131633 -64741536 + AluSg/x SINE Alu 166 296 -14 655 190 11 49 chr13 37131671 37131886 -64741283 - L1MDa LINE L1 -4986 1554 1261 2025 232 75 22 chr13 37131995 37133118 -64740051 - L1MDa LINE L1 -5140 1400 19 505 260 72 22 chr13 37133697 37133878 -64739291 + L2 LINE L2 3123 3312 -1 3326 143 15 0 chr13 37133932 37134470 -64738699 - L1PA16 LINE L1 -17 6149 5604 737 208 25 44 chr13 37134908 37135067 -64738102 + FRAM SINE Alu 1 156 -10 231 147 0 0 chr13 37135071 37135105 -64738064 + Alu SINE Alu 2 35 -268 1201 179 0 5 chr13 37135108 37135309 -64737860 + AluSg/x SINE Alu 113 312 0 25 31 0 0 chr13 37135311 37135343 -64737826 + AT_rich Low_complexity Low_complexity 1 32 0 1544 180 4 0 chr13 37135506 37135756 -64737413 - AluJo SINE Alu -61 251 1 279 312 32 48 chr13 37135765 37135890 -64737279 - MIR SINE MIR -122 140 18 22 0 0 0 chr13 37137832 37137854 -64735315 + AT_rich Low_complexity Low_complexity 1 22 0 1918 145 0 0 chr13 37138888 37139170 -64733999 - AluJb SINE Alu -30 282 1 2201 117 0 0 chr13 37139258 37139558 -64733611 - AluSx SINE Alu -11 301 2 344 345 0 18 chr13 37140123 37140233 -64732936 + L2 LINE L2 3191 3298 -15 413 337 5 43 chr13 37140695 37140879 -64732290 + MER5B DNA MER1_type 1 177 -1 229 302 62 10 chr13 37140883 37140979 -64732190 + MIR SINE MIR 106 206 -56 283 299 78 0 chr13 37142060 37142185 -64730984 + MIR SINE MIR 37 170 -68 29 47 0 0 chr13 37144902 37144945 -64728224 + AT_rich Low_complexity Low_complexity 1 43 0 204 259 231 9 chr13 37147505 37147613 -64725556 + L2 LINE L2 3178 3309 -4 241 387 104 6 chr13 37148029 37148393 -64724776 - L2 LINE L2 -839 2475 2076 201 222 0 0 chr13 37150290 37150326 -64722843 + polypyrimidine Low_complexity Low_complexity 1 36 0 286 317 126 15 chr13 37150939 37151138 -64722031 - MIR SINE MIR -36 226 6 338 336 103 63 chr13 37151477 37152159 -64721010 + L2 LINE L2 2551 3256 -16 185 0 40 0 chr13 37154983 37155008 -64718161 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2019 89 0 62 chr13 37155015 37155307 -64717862 - AluSx SINE Alu -38 274 1 1833 179 3 10 chr13 37155355 37155662 -64717507 + AluJb SINE Alu 1 305 -7 1958 81 77 0 chr13 37156178 37156438 -64716731 - AluSg SINE Alu -30 280 1 528 305 126 0 chr13 37157552 37157775 -64715394 + MIR SINE MIR 1 251 -11 30 0 0 0 chr13 37158264 37158294 -64714875 + AT_rich Low_complexity Low_complexity 1 30 0 2067 105 0 81 chr13 37158353 37158686 -64714483 + AluSx SINE Alu 1 306 -6 1025 209 35 11 chr13 37159204 37159487 -64713682 + MER33 DNA MER1_type 35 324 0 309 274 20 89 chr13 37159496 37159642 -64713527 + MIR3 SINE MIR 59 194 -14 3633 89 87 3 chr13 37160104 37160676 -64712493 + L1MC1 LINE L1 5705 6324 -9 406 346 96 30 chr13 37160981 37161433 -64711736 - L2 LINE L2 -7 3265 2779 183 318 47 9 chr13 37161501 37161608 -64711561 + L2 LINE L2 2871 2981 -291 204 299 104 0 chr13 37162463 37162540 -64710629 + L2 LINE L2 3150 3234 -38 33 0 0 0 chr13 37163591 37163624 -64709545 + AT_rich Low_complexity Low_complexity 1 33 0 385 232 101 7 chr13 37164527 37164665 -64708504 + L1ME4a LINE L1 5971 6121 0 2029 37 0 4 chr13 37164743 37164989 -64708180 - L1PA5 LINE L1 0 6154 5910 366 155 0 0 chr13 37164989 37165060 -64708109 + L1ME3A LINE L1 6095 6165 -5 21 0 0 0 chr13 37166132 37166153 -64707016 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 37167362 37167398 -64705771 + AT_rich Low_complexity Low_complexity 1 36 0 253 216 226 74 chr13 37167511 37167644 -64705525 + MIR SINE MIR 19 164 -67 1593 140 10 143 chr13 37167782 37168182 -64704987 - MER7A DNA MER2_type 0 346 2 24 32 0 0 chr13 37169233 37169264 -64703905 + AT_rich Low_complexity Low_complexity 1 31 0 1657 80 5 0 chr13 37170300 37170501 -64702668 - AluSg SINE Alu -108 202 1 21 36 0 0 chr13 37170617 37170645 -64702524 + AT_rich Low_complexity Low_complexity 1 28 0 401 358 46 14 chr13 37171016 37171234 -64701935 - MIR SINE MIR -6 256 32 2194 47 72 11 chr13 37172119 37172398 -64700771 + AluY SINE Alu 1 296 -15 2031 123 0 0 chr13 37172940 37173216 -64699953 + AluSx SINE Alu 1 276 -36 243 0 0 0 chr13 37173226 37173253 -64699916 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 545 302 102 53 chr13 37173462 37173638 -64699531 + L1M4 LINE L1 2676 2842 -3304 1736 179 3 13 chr13 37173638 37173945 -64699224 + AluJb SINE Alu 3 306 -6 545 302 102 53 chr13 37173945 37174198 -64698971 + L1M4 LINE L1 2842 3126 -3020 1994 146 0 52 chr13 37174588 37174972 -64698197 + AluJb SINE Alu 1 367 0 2158 122 20 0 chr13 37176131 37176426 -64696743 + AluSq SINE Alu 1 301 -12 449 293 49 8 chr13 37176793 37176916 -64696253 + L2 LINE L2 3185 3312 -1 1208 272 33 65 chr13 37177170 37177876 -64695293 + L1MC4 LINE L1 7268 7950 -92 22 70 0 0 chr13 37177945 37177988 -64695181 + AT_rich Low_complexity Low_complexity 1 43 0 640 178 8 17 chr13 37177999 37178117 -64695052 + AluJo SINE Alu 20 136 -176 249 280 251 5 chr13 37178341 37178548 -64694621 - MIR SINE MIR -2 260 3 485 278 111 57 chr13 37180833 37181275 -64691894 - L1ME4a LINE L1 -125 5996 5531 430 215 93 0 chr13 37181277 37181384 -64691785 - MIR SINE MIR -61 201 85 196 329 38 0 chr13 37181849 37181928 -64691241 + MER5A DNA MER1_type 108 189 0 2258 122 0 0 chr13 37182171 37182483 -64690686 - AluSx SINE Alu 0 312 1 206 382 36 27 chr13 37182520 37182630 -64690539 + L2 LINE L2 3154 3264 -8 364 222 196 39 chr13 37184015 37184168 -64689001 + MER5B DNA MER1_type 1 177 -1 854 220 86 10 chr13 37184664 37184873 -64688296 + MIR SINE MIR 32 256 -6 2181 157 34 23 chr13 37185431 37185908 -64687261 + L1MB2 LINE L1 5686 6167 -4 2948 199 7 53 chr13 37186877 37187561 -64685608 - MER82 DNA MER2_type 0 653 1 1717 175 11 0 chr13 37187627 37187913 -64685256 - AluJb SINE Alu -23 289 1 342 0 0 0 chr13 37188467 37188505 -64684664 + (TG)n Simple_repeat Simple_repeat 2 39 0 213 293 103 52 chr13 37190150 37190266 -64682903 - L2 LINE L2 -8 3305 3184 295 321 101 0 chr13 37191044 37191153 -64682016 - MIR3 SINE MIR -2 206 87 671 286 142 25 chr13 37191158 37191518 -64681651 + MLT1J1 LTR MaLR 45 446 0 1288 83 0 22 chr13 37191556 37191736 -64681433 + AluSg/x SINE Alu 129 304 -8 484 291 84 11 chr13 37191797 37191976 -64681193 + MIR SINE MIR 71 262 0 947 161 169 4 chr13 37192239 37192481 -64680688 + L1ME3A LINE L1 5839 6120 -50 1567 150 108 81 chr13 37192542 37192712 -64680457 + MSTB LTR MaLR 8 172 -254 2359 92 0 0 chr13 37192712 37193007 -64680162 + AluSc SINE Alu 1 295 -14 1567 150 108 81 chr13 37193007 37193243 -64679926 + MSTB LTR MaLR 172 425 -1 198 94 0 0 chr13 37193665 37193697 -64679472 - L2 LINE L2 -1 3312 3281 228 35 0 0 chr13 37194963 37194992 -64678177 + (CAGAA)n Simple_repeat Simple_repeat 4 32 0 2222 121 0 0 chr13 37197446 37197753 -64675416 + AluSx SINE Alu 1 307 -5 3795 106 72 13 chr13 37198008 37198623 -64674546 + MER39B LTR ERV1 3 653 0 201 171 0 0 chr13 37198807 37198842 -64674327 + A-rich Low_complexity Low_complexity 1 35 0 2262 145 23 16 chr13 37202220 37202607 -64670562 + MLT1B LTR MaLR 1 390 0 360 0 0 0 chr13 37202742 37202782 -64670387 + (CA)n Simple_repeat Simple_repeat 1 40 0 205 151 38 0 chr13 37203638 37203691 -64669478 + GA-rich Low_complexity Low_complexity 3 57 0 199 217 22 0 chr13 37204475 37204521 -64668648 + L3 LINE CR1 1524 1570 -7 317 134 0 45 chr13 37205955 37206022 -64667147 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 1937 116 31 20 chr13 37207283 37207598 -64665571 - AluJb SINE Alu 0 312 1 2573 55 0 0 chr13 37208765 37209076 -64664093 + AluY SINE Alu 1 311 0 1217 46 7 0 chr13 37209081 37209274 -64663895 + AluY SINE Alu 127 320 0 778 167 14 0 chr13 37209278 37209453 -64663716 + FRAM SINE Alu 1 43 0 697 206 41 105 chr13 37209456 37209845 -64663324 - L1MC5 LINE L1 -903 7058 6695 2121 89 14 14 chr13 37210064 37210357 -64662812 - AluSq SINE Alu -20 293 1 183 80 0 0 chr13 37210990 37211015 -64662154 + (T)n Simple_repeat Simple_repeat 1 25 0 25 51 0 0 chr13 37211138 37211177 -64661992 + AT_rich Low_complexity Low_complexity 1 39 0 1118 173 0 0 chr13 37211893 37212066 -64661103 - AluJb SINE Alu -14 298 126 545 86 25 0 chr13 37212683 37212764 -64660405 - L1PA6 LINE L1 -270 5884 5802 3136 119 45 0 chr13 37213351 37213839 -64659330 + MER1A DNA MER1_type 20 529 0 578 229 41 41 chr13 37214235 37214479 -64658690 + L1MC4a LINE L1 5270 5513 -2295 351 247 181 0 chr13 37214497 37214604 -64658565 + L1MC4a LINE L1 5576 5662 -2146 2234 125 0 0 chr13 37214604 37214907 -64658262 - AluSx SINE Alu -9 303 1 351 247 181 0 chr13 37214907 37214965 -64658204 + L1MC4a LINE L1 5662 5771 -2037 360 225 17 58 chr13 37215089 37215209 -64657960 + L1MC4a LINE L1 5796 5910 -1898 21 57 0 0 chr13 37215216 37215251 -64657918 + AT_rich Low_complexity Low_complexity 1 35 0 300 307 113 20 chr13 37216043 37216193 -64656976 + MIR3 SINE MIR 33 196 -12 387 296 121 15 chr13 37218774 37218906 -64654263 - MER5B DNA MER1_type -3 175 30 590 260 34 17 chr13 37219240 37219417 -64653752 - MIR SINE MIR -70 192 13 352 241 195 79 chr13 37220886 37221127 -64652042 + L2 LINE L2 3041 3309 -4 927 234 18 32 chr13 37221277 37221495 -64651674 + MIR SINE MIR 38 252 -10 2558 271 117 9 chr13 37223822 37225163 -64648006 - L2 LINE L2 -6 3307 1823 1130 177 0 63 chr13 37225168 37225368 -64647801 + L1MB2 LINE L1 5931 6113 -58 2344 96 6 13 chr13 37225368 37225680 -64647489 + AluSx SINE Alu 1 310 -2 1130 177 0 63 chr13 37225680 37225733 -64647436 + L1MB2 LINE L1 6113 6168 -3 1355 85 6 0 chr13 37225912 37226088 -64647081 + AluY SINE Alu 126 302 -9 524 311 160 6 chr13 37226088 37226413 -64646756 - L2 LINE L2 -1733 1581 1207 266 345 115 40 chr13 37226732 37227106 -64646063 - L2 LINE L2 -2 3270 2869 296 311 85 81 chr13 37227118 37227378 -64645791 - L2 LINE L2 -657 2657 2399 2526 57 3 0 chr13 37227378 37227676 -64645493 + AluSg SINE Alu 1 299 -11 296 311 85 81 chr13 37227676 37227946 -64645223 - L2 LINE L2 -915 2399 2125 411 230 78 84 chr13 37229268 37229338 -64643831 - MIR SINE MIR -7 255 186 2142 138 0 3 chr13 37229338 37229636 -64643533 - AluSx SINE Alu -15 297 1 411 230 78 84 chr13 37229636 37229756 -64643413 - MIR SINE MIR -76 186 66 446 101 56 45 chr13 37229758 37229847 -64643322 + L1MB4 LINE L1 6091 6180 0 273 283 0 0 chr13 37229977 37230030 -64643139 - MIR SINE MIR -187 75 23 2333 131 14 17 chr13 37231849 37232281 -64640888 - HERVE LTR ERV1 -4182 3895 3249 3038 96 0 5 chr13 37232696 37233142 -64640027 - HERVE LTR ERV1 -3967 3846 3403 1642 100 4 12 chr13 37233136 37233395 -64639774 - HERVE LTR ERV1 -4308 3505 3249 * 348 229 99 164 chr13 37233465 37233788 -64639381 - L1M4b LINE L1 -6218 641 340 485 259 72 31 chr13 37233858 37234151 -64639018 + SATR1 Satellite Satellite 142 446 -24 297 241 170 9 chr13 37234234 37234346 -64638823 + SATR1 Satellite Satellite 197 326 -144 515 239 282 4 chr13 37234447 37234702 -64638467 + SATR1 Satellite Satellite 145 470 0 713 231 304 3 chr13 37234730 37235324 -64637845 + SATR1 Satellite Satellite 1 772 -1 497 229 266 5 chr13 37235406 37235620 -64637549 + SATR1 Satellite Satellite 198 467 -3 849 225 218 31 chr13 37235659 37236701 -64636468 + SATR1 Satellite Satellite 1 1236 -404 3465 59 0 2 chr13 37237375 37237813 -64635356 + L1PA5 LINE L1 5707 6143 -11 25 0 0 0 chr13 37237826 37237851 -64635318 + AT_rich Low_complexity Low_complexity 1 25 0 205 154 77 0 chr13 37238418 37238457 -64634712 + L2 LINE L2 3261 3302 -11 2356 173 47 29 chr13 37239176 37239445 -64633724 + Tigger3(Golem) DNA MER2_type 2466 2729 -300 261 0 0 0 chr13 37239445 37239474 -64633695 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2356 173 47 29 chr13 37239474 37239758 -64633411 + Tigger3(Golem) DNA MER2_type 2729 3029 0 253 331 79 7 chr13 37239931 37240070 -64633099 - MIR SINE MIR -18 244 96 3131 47 0 0 chr13 37240434 37240815 -64632354 + L1PA5 LINE L1 5773 6153 -1 226 176 54 40 chr13 37240905 37240979 -64632190 - Charlie8 DNA MER1_type -2253 164 90 186 315 158 31 chr13 37241037 37241164 -64632005 + L2 LINE L2 1833 1975 -1339 182 348 77 13 chr13 37241442 37241597 -64631572 + L2 LINE L2 3110 3274 -39 391 236 75 46 chr13 37241607 37241781 -64631388 + LTR41 LTR ERVL 3 181 -592 2463 56 3 0 chr13 37242053 37242356 -64630813 + AluY SINE Alu 1 304 -7 341 339 22 46 chr13 37242856 37243117 -64630052 + L1MC/D LINE L1 5194 5448 -716 347 295 171 46 chr13 37243191 37243472 -64629697 - LTR67 LTR ERVL -132 425 110 237 305 0 0 chr13 37243620 37243715 -64629454 + L1MC/D LINE L1 5679 5773 -2035 204 125 0 0 chr13 37243932 37243964 -64629205 + (TG)n Simple_repeat Simple_repeat 2 33 0 203 337 42 0 chr13 37244683 37244778 -64628391 - MIR SINE MIR -73 189 91 14287 138 26 53 chr13 37245218 37248021 -64625148 + Tigger4(Zombi) DNA MER2_type 2 2727 -4 283 296 61 9 chr13 37248615 37248730 -64624439 - MIR SINE MIR -76 186 66 308 315 45 0 chr13 37249550 37249639 -64623530 + L2 LINE L2 3205 3297 -16 207 186 0 0 chr13 37249657 37249700 -64623469 + (TG)n Simple_repeat Simple_repeat 1 43 0 * 248 77 26 0 chr13 37249699 37249738 -64623431 + (GA)n Simple_repeat Simple_repeat 1 40 0 372 22 0 0 chr13 37250030 37250075 -64623094 + (TG)n Simple_repeat Simple_repeat 2 46 0 355 177 48 0 chr13 37252179 37252241 -64620928 - MLT1A2 LTR MaLR -305 69 5 1016 180 4 79 chr13 37252244 37252511 -64620658 + L1ME1 LINE L1 5662 5908 -258 2374 101 143 11 chr13 37252511 37252889 -64620280 - MSTA LTR MaLR 0 428 1 707 252 34 64 chr13 37252889 37253155 -64620014 + L1ME1 LINE L1 5904 6161 -5 305 294 24 32 chr13 37253173 37253299 -64619870 + L2 LINE L2 1917 2041 -1273 2137 119 0 0 chr13 37253630 37253925 -64619244 + AluSx SINE Alu 1 295 -17 2173 123 0 3 chr13 37255898 37256200 -64616969 - AluSx SINE Alu -11 301 1 225 183 270 78 chr13 37256218 37256333 -64616836 - MIR SINE MIR -118 144 8 186 71 0 0 chr13 37256386 37256414 -64616755 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 291 231 94 43 chr13 37256585 37256702 -64616467 + MIR SINE MIR 23 145 -63 180 220 186 17 chr13 37257036 37257095 -64616074 - L2 LINE L2 -8 3264 3196 2093 124 0 0 chr13 37257996 37258304 -64614865 - AluSx SINE Alu 0 308 1 194 298 53 76 chr13 37258306 37258395 -64614774 - L2 LINE L2 -1 3271 3184 2292 113 3 3 chr13 37258395 37258705 -64614464 + AluSx SINE Alu 1 310 -2 194 298 53 76 chr13 37258705 37258746 -64614423 - L2 LINE L2 -88 3184 3144 221 198 208 28 chr13 37258887 37258993 -64614176 + MIR SINE MIR 20 144 -64 2384 122 53 10 chr13 37259084 37259477 -64613692 - L1MB3 LINE L1 -2 6181 5772 2219 161 34 6 chr13 37259655 37260010 -64613159 - MLT1A1 LTR MaLR 0 365 1 445 291 89 25 chr13 37260879 37261037 -64612132 + MIR SINE MIR 24 191 -71 420 192 216 0 chr13 37261169 37261294 -64611875 + MER4C LTR ERV1 314 465 0 2277 105 3 0 chr13 37261669 37261973 -64611196 + AluSg SINE Alu 1 305 -5 1832 161 0 20 chr13 37261982 37262281 -64610888 + AluSx SINE Alu 1 293 -19 2023 171 25 33 chr13 37262466 37262834 -64610335 + MLT1A1 LTR MaLR 1 365 0 2205 106 0 3 chr13 37262862 37263154 -64610015 + AluSg SINE Alu 2 292 -18 28 0 0 0 chr13 37263154 37263182 -64609987 + AT_rich Low_complexity Low_complexity 1 28 0 832 154 0 0 chr13 37264635 37264765 -64608404 - FLAM_A SINE Alu 0 142 13 2157 101 3 3 chr13 37264941 37265229 -64607940 - AluSq SINE Alu -25 288 1 235 241 0 0 chr13 37265582 37265636 -64607533 + MER112 DNA MER1_type 1 54 -206 333 0 0 0 chr13 37265661 37265698 -64607471 + (CA)n Simple_repeat Simple_repeat 2 38 0 302 323 21 11 chr13 37267104 37267197 -64605972 + MIR SINE MIR 30 123 -85 507 272 80 46 chr13 37267437 37267676 -64605493 + MIR SINE MIR 16 262 0 1601 179 22 0 chr13 37267715 37267989 -64605180 + AluJb SINE Alu 1 280 -32 423 56 0 0 chr13 37267994 37268048 -64605121 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1726 147 44 4 chr13 37268727 37268999 -64604170 - AluJo SINE Alu -29 283 1 1116 119 38 16 chr13 37269121 37269306 -64603863 + MER53 DNA DNA 1 189 0 275 127 0 18 chr13 37270550 37270605 -64602564 + (TCC)n Simple_repeat Simple_repeat 2 55 0 671 289 17 0 chr13 37270930 37271103 -64602066 - MIR3 SINE MIR -13 195 20 279 0 0 0 chr13 37271191 37271222 -64601947 + (TG)n Simple_repeat Simple_repeat 2 32 0 811 191 122 69 chr13 37271576 37271599 -64601570 - MER74B LTR ERVL -57 565 545 1908 140 14 0 chr13 37271599 37271908 -64601261 - AluSx SINE Alu 0 314 2 811 191 122 69 chr13 37271908 37272202 -64600967 - MER74B LTR ERVL -77 545 230 252 254 0 0 chr13 37272240 37272295 -64600874 - MER74B LTR ERVL -565 57 3 368 139 42 0 chr13 37272619 37272691 -64600478 + CT-rich Low_complexity Low_complexity 5 79 0 302 300 46 23 chr13 37274648 37274778 -64598391 - L2 LINE L2 -4 3268 3136 22 35 0 0 chr13 37274778 37274807 -64598362 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr13 37275443 37275483 -64597686 + AT_rich Low_complexity Low_complexity 1 40 0 1845 95 0 46 chr13 37275571 37275856 -64597313 - L1PB1 LINE L1 -204 5947 5676 305 266 46 0 chr13 37276466 37276575 -64596594 + Charlie5 DNA MER1_type 10 123 -2489 1204 183 110 27 chr13 37276590 37276918 -64596251 + Charlie5 DNA MER1_type 2268 2622 0 678 113 0 106 chr13 37277138 37277280 -64595889 + L1PA7 LINE L1 6028 6154 0 2319 84 7 0 chr13 37278149 37278446 -64594723 + AluSc SINE Alu 1 299 -10 528 209 29 0 chr13 37278627 37278732 -64594437 - MER5B DNA MER1_type -6 172 65 1167 223 55 0 chr13 37279043 37279317 -64593852 - L1MA9 LINE L1 -36 6276 5988 2595 149 21 14 chr13 37280151 37280574 -64592595 - MSTB LTR MaLR 0 426 1 1649 149 110 65 chr13 37281743 37282172 -64590997 - LTR7 LTR ERV1 -2 448 1 505 261 61 61 chr13 37282288 37282468 -64590701 + MIR3 SINE MIR 3 182 -26 318 327 77 0 chr13 37282911 37283015 -64590154 - L2 LINE L2 -1 3271 3160 1765 127 6 100 chr13 37283059 37283399 -64589770 - Tigger3(Golem) DNA MER2_type -1 3028 2721 257 274 123 0 chr13 37283397 37283470 -64589699 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 456 67 0 0 chr13 37284091 37284151 -64589018 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 2124 114 3 3 chr13 37284151 37284448 -64588721 - AluSx SINE Alu -15 297 1 186 118 0 0 chr13 37284770 37284804 -64588365 + (TTG)n Simple_repeat Simple_repeat 2 35 0 833 175 15 0 chr13 37285278 37285415 -64587754 + FRAM SINE Alu 22 160 -16 1347 45 0 0 chr13 37289353 37289508 -64583661 - L1PA5 LINE L1 0 6154 6000 1962 164 0 3 chr13 37289515 37289826 -64583343 - AluJo SINE Alu -2 310 1 269 214 36 0 chr13 37290902 37290956 -64582213 - MLT1H1 LTR MaLR -3 592 537 1713 128 28 92 chr13 37290956 37291276 -64581893 + MLT1A1 LTR MaLR 1 297 -68 1879 154 3 22 chr13 37291276 37291594 -64581575 - AluJb SINE Alu 0 312 1 1713 128 28 92 chr13 37291594 37291633 -64581536 + MLT1A1 LTR MaLR 297 337 -28 1535 157 119 72 chr13 37291920 37292348 -64580821 + LTR7 LTR ERV1 1 448 -2 188 316 95 63 chr13 37292674 37292769 -64580400 + MIR SINE MIR 1 98 -164 2063 106 0 65 chr13 37293999 37294321 -64578848 + AluSg SINE Alu 3 303 -7 411 21 0 0 chr13 37296139 37296187 -64576982 + (CA)n Simple_repeat Simple_repeat 2 49 0 232 376 35 14 chr13 37297128 37297269 -64575900 - MIR SINE MIR 0 262 119 2160 107 27 0 chr13 37297380 37297678 -64575491 + AluSq SINE Alu 1 306 -7 2086 104 27 20 chr13 37297769 37298066 -64575103 + AluSx SINE Alu 1 299 -13 2295 97 0 3 chr13 37298178 37298478 -64574691 + AluSq SINE Alu 1 299 -14 2238 205 67 71 chr13 37298927 37300199 -64572970 + L1MC4 LINE L1 4711 5397 -749 1981 130 56 0 chr13 37300432 37300717 -64572452 - AluSx SINE Alu -11 301 1 256 179 18 18 chr13 37301034 37301090 -64572079 + L1M4 LINE L1 4188 4243 -1903 503 229 133 60 chr13 37301163 37301431 -64571738 - MLT1H1 LTR MaLR -30 525 186 893 132 0 8 chr13 37301728 37301857 -64571312 + AluJb SINE Alu 26 153 -159 10173 42 9 0 chr13 37302792 37304725 -64568444 - L1PA5 LINE L1 -4 6150 4196 194 100 67 17 chr13 37305530 37305590 -64567579 + T-rich Low_complexity Low_complexity 6 68 0 2005 167 3 0 chr13 37305608 37305919 -64567250 - AluJb SINE Alu 0 312 1 296 243 39 48 chr13 37306015 37306118 -64567051 - MIR SINE MIR -119 143 42 264 77 51 0 chr13 37306135 37306174 -64566995 - MADE1 DNA Mariner -39 41 1 2305 145 58 24 chr13 37306489 37306903 -64566266 + MSTA LTR MaLR 1 428 0 203 198 185 0 chr13 37307067 37307148 -64566021 - MIR SINE MIR -69 193 98 233 254 58 29 chr13 37308588 37308726 -64564443 - Charlie7 DNA MER1_type -33 2579 2438 226 300 30 40 chr13 37308712 37308812 -64564357 - Charlie7 DNA MER1_type -2507 105 7 * 3567 188 10 7 chr13 37309238 37310355 -64562814 - L1MB8 LINE L1 -281 5897 4779 3533 23 2 18 chr13 37311438 37311835 -64561334 - SVA Other Other 0 1386 996 256 315 0 0 chr13 37311967 37312059 -64561110 + A-rich Low_complexity Low_complexity 1 92 0 233 172 0 40 chr13 37312094 37312193 -64560976 + A-rich Low_complexity Low_complexity 1 95 0 692 21 0 32 chr13 37312218 37312313 -64560856 + (A)n Simple_repeat Simple_repeat 1 92 0 690 80 0 36 chr13 37312313 37312450 -64560719 - SVA Other Other -635 751 620 826 124 0 0 chr13 37312462 37312575 -64560594 - AluJb SINE Alu -187 125 13 247 206 0 15 chr13 37313687 37313736 -64559433 + A-rich Low_complexity Low_complexity 4 53 -17 243 0 0 0 chr13 37313736 37313763 -64559406 + (CA)n Simple_repeat Simple_repeat 2 28 0 247 206 0 15 chr13 37313763 37313781 -64559388 + A-rich Low_complexity Low_complexity 53 70 0 2236 103 0 7 chr13 37314749 37315040 -64558129 + AluSg SINE Alu 1 289 -21 2202 110 16 7 chr13 37315395 37315704 -64557465 + AluSx SINE Alu 1 312 0 386 275 259 0 chr13 37315706 37315837 -64557332 - MER5A DNA MER1_type -16 173 9 382 312 163 21 chr13 37316020 37316449 -64556720 - LTR33 LTR ERVL -4 517 28 467 139 0 0 chr13 37317427 37317506 -64555663 - L1MB4 LINE L1 -5 6175 6097 22 0 0 0 chr13 37317513 37317535 -64555634 + AT_rich Low_complexity Low_complexity 1 22 0 2321 100 6 3 chr13 37317613 37317924 -64555245 - AluSq SINE Alu -1 312 1 514 197 58 122 chr13 37318266 37318454 -64554715 + MIR SINE MIR 17 192 -70 594 247 89 49 chr13 37318457 37318745 -64554424 - MLT1J2 LTR MaLR -3 447 102 207 0 0 0 chr13 37318762 37318785 -64554384 + (A)n Simple_repeat Simple_repeat 1 23 0 456 242 100 0 chr13 37318785 37318905 -64554264 - LTR33 LTR ERVL -17 504 373 257 339 136 17 chr13 37318946 37319123 -64554046 - LTR33 LTR ERVL -321 200 3 231 250 0 0 chr13 37319126 37319178 -64553991 + MIR SINE MIR 199 250 -12 333 273 103 48 chr13 37319629 37319794 -64553375 - L3 LINE CR1 0 1577 1404 * 347 324 67 31 chr13 37319788 37320013 -64553156 - MIR SINE MIR -22 240 8 192 306 74 28 chr13 37320198 37320269 -64552900 - MIR SINE MIR -70 192 113 1913 181 0 6 chr13 37320269 37320583 -64552586 + AluJb SINE Alu 1 312 0 192 306 74 28 chr13 37320583 37320619 -64552550 - MIR SINE MIR -149 113 80 235 344 42 21 chr13 37320625 37320721 -64552448 - MIR3 SINE MIR -107 101 4 195 42 0 0 chr13 37321544 37321568 -64551601 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1123 168 5 55 chr13 37321573 37321793 -64551376 - AluJb SINE Alu -23 289 81 2448 140 8 3 chr13 37321923 37322287 -64550882 + MER47A DNA MER2_type 1 366 0 232 290 43 0 chr13 37322466 37322535 -64550634 - MIR SINE MIR -31 231 160 277 311 172 8 chr13 37323149 37323271 -64549898 + L2 LINE L2 3129 3270 -2 207 299 37 19 chr13 37324107 37324214 -64548955 + MIR SINE MIR 100 208 -54 1054 186 21 0 chr13 37324317 37324510 -64548659 - MER44D DNA MER2_type -2 603 407 22 35 0 0 chr13 37324849 37324878 -64548291 + AT_rich Low_complexity Low_complexity 1 29 0 1263 95 0 0 chr13 37325223 37325381 -64547788 - AluSq SINE Alu -155 158 1 3182 199 10 47 chr13 37325385 37325723 -64547446 + MER82 DNA MER2_type 1 303 -350 2317 98 0 0 chr13 37325723 37326018 -64547151 + AluSq SINE Alu 1 295 -18 3182 199 10 47 chr13 37326018 37326357 -64546812 + MER82 DNA MER2_type 303 653 0 284 272 12 0 chr13 37329217 37329298 -64543871 + MIR SINE MIR 32 113 -149 237 132 0 0 chr13 37330076 37330114 -64543055 + (A)n Simple_repeat Simple_repeat 1 38 0 187 250 54 0 chr13 37330776 37330832 -64542337 - MIR SINE MIR -63 145 87 1084 179 0 0 chr13 37332683 37332862 -64540307 - FRAM SINE Alu 0 176 1 671 236 54 106 chr13 37333282 37333479 -64539690 + L1MC4 LINE L1 7292 7498 -544 2132 138 0 0 chr13 37333479 37333784 -64539385 + AluSq SINE Alu 3 307 -6 671 236 54 106 chr13 37333784 37334049 -64539120 + L1MC4 LINE L1 7498 7826 -216 1692 168 36 7 chr13 37334049 37334329 -64538840 + AluJo SINE Alu 1 288 -24 671 236 54 106 chr13 37334329 37334418 -64538751 + L1MC4 LINE L1 7826 7918 -124 2285 98 0 10 chr13 37334475 37334781 -64538388 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr13 37335142 37335163 -64538006 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 37335366 37335389 -64537780 + AT_rich Low_complexity Low_complexity 1 23 0 1978 139 0 10 chr13 37336659 37336962 -64536207 + AluJb SINE Alu 1 300 -12 2211 67 84 0 chr13 37337798 37338082 -64535087 - AluY SINE Alu -3 308 1 583 224 164 7 chr13 37338921 37339073 -64534096 - MER5A DNA MER1_type -9 180 5 1225 117 0 0 chr13 37339450 37339621 -64533548 + AluSg/x SINE Alu 132 302 -8 1627 167 0 55 chr13 37340577 37340888 -64532281 + AluJb SINE Alu 1 294 -18 198 0 0 0 chr13 37340985 37341007 -64532162 + (A)n Simple_repeat Simple_repeat 1 22 0 2015 116 0 0 chr13 37341198 37341474 -64531695 - AluSx SINE Alu 0 312 37 554 306 77 24 chr13 37341664 37341912 -64531257 + MIR SINE MIR 2 262 0 1256 212 109 9 chr13 37345802 37345977 -64527192 + MLT1E1 LTR MaLR 57 213 -441 2208 113 3 13 chr13 37345977 37346288 -64526881 + AluSq SINE Alu 1 308 -5 1256 212 109 9 chr13 37346288 37346600 -64526569 + MLT1E1 LTR MaLR 213 654 0 315 0 0 0 chr13 37347829 37347864 -64525305 + (CA)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr13 37348528 37348552 -64524617 + (A)n Simple_repeat Simple_repeat 1 24 0 4500 79 32 48 chr13 37349027 37349230 -64523939 - L1MA2 LINE L1 0 6304 6099 1922 98 83 18 chr13 37349230 37349507 -64523662 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr13 37349507 37349529 -64523640 + (TA)n Simple_repeat Simple_repeat 2 23 0 4500 79 32 48 chr13 37349529 37350005 -64523164 - L1MA2 LINE L1 -203 6101 5635 313 256 56 81 chr13 37350090 37350250 -64522919 - L2 LINE L2 0 3313 3158 778 261 81 0 chr13 37350263 37350474 -64522695 - MIR SINE MIR -1 261 34 312 120 0 0 chr13 37351443 37351493 -64521676 + (TC)n Simple_repeat Simple_repeat 1 50 0 509 301 40 6 chr13 37351535 37351708 -64521461 - MIR SINE MIR -74 188 10 182 350 80 0 chr13 37352846 37352946 -64520223 + MIR SINE MIR 22 129 -133 491 304 54 6 chr13 37353137 37353305 -64519864 + MIR SINE MIR 55 230 -32 246 279 140 39 chr13 37353954 37354133 -64519036 + MIR SINE MIR 56 252 -10 569 222 99 47 chr13 37354495 37354700 -64518469 - L1MB8 LINE L1 -1 6177 5955 409 215 112 0 chr13 37355037 37355144 -64518025 + MER94 DNA DNA 1 119 -15 315 0 0 0 chr13 37355847 37355882 -64517287 + (CA)n Simple_repeat Simple_repeat 2 36 0 198 263 139 44 chr13 37356738 37356875 -64516294 + MIR SINE MIR 43 192 -70 396 59 0 0 chr13 37357511 37357562 -64515607 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2068 125 7 0 chr13 37357565 37357845 -64515324 - AluSx SINE Alu -30 282 1 195 333 132 0 chr13 37357888 37358002 -64515167 + MIR3 SINE MIR 15 143 -65 565 199 232 0 chr13 37358215 37358396 -64514773 - MIR SINE MIR -33 229 7 216 294 77 47 chr13 37358497 37358667 -64514502 - MIR SINE MIR -23 239 65 347 217 16 78 chr13 37359489 37359618 -64513551 + MIR3 SINE MIR 48 168 -40 242 308 15 0 chr13 37359756 37359821 -64513348 + MIR SINE MIR 197 262 0 701 261 17 11 chr13 37359834 37360014 -64513155 - MIR SINE MIR -79 183 3 1905 169 17 50 chr13 37360726 37361128 -64512041 + MLT1B LTR MaLR 2 390 0 21 0 0 0 chr13 37364167 37364188 -64508981 + AT_rich Low_complexity Low_complexity 1 21 0 1798 155 11 0 chr13 37364620 37364923 -64508246 - AluSx SINE Alu 0 306 1 1614 142 44 22 chr13 37365313 37365480 -64507689 - AluJb SINE Alu 0 309 132 2033 119 0 52 chr13 37365480 37365816 -64507353 - AluSx SINE Alu 0 312 1 1614 142 44 22 chr13 37365816 37365951 -64507218 - AluJb SINE Alu -177 132 1 439 203 81 47 chr13 37366405 37366553 -64506616 + L2 LINE L2 3158 3310 -3 358 297 36 14 chr13 37366619 37366757 -64506412 + MIR SINE MIR 8 148 -114 22 0 0 0 chr13 37369843 37369865 -64503304 + GC_rich Low_complexity Low_complexity 1 22 0 225 65 0 0 chr13 37369872 37369903 -64503266 + (TGG)n Simple_repeat Simple_repeat 3 33 0 21 36 0 0 chr13 37369985 37370013 -64503156 + GC_rich Low_complexity Low_complexity 1 28 0 188 299 182 32 chr13 37370693 37370880 -64502289 - MIR SINE MIR -18 244 30 182 274 62 82 chr13 37372187 37372333 -64500836 + L2 LINE L2 3170 3312 -1 21 36 0 0 chr13 37372884 37372912 -64500257 + AT_rich Low_complexity Low_complexity 1 28 0 1564 114 152 73 chr13 37373202 37373491 -64499678 - AluSq SINE Alu -1 312 1 189 0 0 0 chr13 37373493 37373514 -64499655 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2024 128 4 0 chr13 37373514 37373795 -64499374 - AluSx SINE Alu -30 282 1 1836 86 14 50 chr13 37374423 37374512 -64498657 + L1PB1 LINE L1 5881 5972 -179 2150 122 3 0 chr13 37374512 37374806 -64498363 + AluSx SINE Alu 1 295 -17 1836 86 14 50 chr13 37374806 37374995 -64498174 + L1PB1 LINE L1 5972 6149 -2 2414 71 0 7 chr13 37375194 37375490 -64497679 + AluSc SINE Alu 1 294 -15 1914 164 32 18 chr13 37375708 37376050 -64497119 - MER7A DNA MER2_type -1 345 1 441 237 20 33 chr13 37376160 37376312 -64496857 + MER103 DNA DNA 10 159 -7 25 75 0 0 chr13 37377466 37377519 -64495650 + AT_rich Low_complexity Low_complexity 1 53 0 297 360 29 7 chr13 37378744 37378883 -64494286 - MIR3 SINE MIR -48 160 19 21 0 0 0 chr13 37380740 37380761 -64492408 + AT_rich Low_complexity Low_complexity 1 21 0 417 352 11 11 chr13 37381220 37381402 -64491767 + MIR3 SINE MIR 20 201 -7 1977 123 42 0 chr13 37382028 37382312 -64490857 - AluSx SINE Alu -12 300 5 1345 174 56 62 chr13 37382363 37382425 -64490744 - LTR37A LTR ERV1 0 426 365 2210 128 0 0 chr13 37382425 37382730 -64490439 + AluSx SINE Alu 1 305 -7 1345 174 56 62 chr13 37382730 37383057 -64490112 - LTR37A LTR ERV1 -61 365 39 2637 47 0 0 chr13 37383233 37383530 -64489639 - AluSq SINE Alu -16 297 1 1681 185 15 36 chr13 37383530 37383865 -64489304 - MER82 DNA MER2_type -321 332 5 1275 95 0 0 chr13 37383872 37384030 -64489139 + AluSq SINE Alu 1 158 -155 1610 38 0 0 chr13 37384372 37384634 -64488535 + (G)n Simple_repeat Simple_repeat 1 262 0 832 171 0 27 chr13 37384638 37384784 -64488385 - MER44D DNA MER2_type -197 412 1 2148 116 0 49 chr13 37385114 37385441 -64487728 + AluSx SINE Alu 1 311 -1 804 232 57 38 chr13 37385822 37386085 -64487084 - LTR40b LTR ERVL -2 460 193 321 300 18 71 chr13 37386415 37386585 -64486584 + MLT1K LTR MaLR 347 507 -81 2092 173 19 102 chr13 37386644 37387210 -64485959 - MLT2B1 LTR ERVL -1 519 1 437 0 0 19 chr13 37387554 37387608 -64485561 + (GA)n Simple_repeat Simple_repeat 1 53 0 1987 106 3 78 chr13 37389068 37389389 -64483780 - AluSq SINE Alu -16 297 1 287 278 0 19 chr13 37389482 37389590 -64483579 + (TA)n Simple_repeat Simple_repeat 2 107 0 484 260 110 59 chr13 37389604 37389877 -64483292 - L1MC4 LINE L1 -143 7899 7613 2349 100 3 3 chr13 37389887 37390196 -64482973 - AluSq SINE Alu -4 309 1 39 22 0 0 chr13 37390255 37390301 -64482868 + AT_rich Low_complexity Low_complexity 1 46 0 231 277 24 24 chr13 37390537 37390620 -64482549 - L1MC4 LINE L1 -678 7364 7282 1969 149 0 19 chr13 37391038 37391353 -64481816 + AluJb SINE Alu 1 309 -3 2594 93 36 3 chr13 37393409 37393795 -64479374 - MER39B LTR ERV1 0 653 255 527 73 0 12 chr13 37393795 37393877 -64479292 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 267 93 0 0 chr13 37394013 37394056 -64479113 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 25 31 0 0 chr13 37394157 37394189 -64478980 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr13 37394475 37394504 -64478665 + AT_rich Low_complexity Low_complexity 1 29 0 3867 141 42 20 chr13 37394821 37395507 -64477662 - L1MB2 LINE L1 0 6171 5471 215 169 51 51 chr13 37395737 37395796 -64477373 + L2 LINE L2 3255 3313 0 23 0 0 0 chr13 37395954 37395977 -64477192 + AT_rich Low_complexity Low_complexity 1 23 0 1085 125 0 0 chr13 37396016 37396160 -64477009 - AluSq/x SINE Alu -168 144 1 374 261 141 0 chr13 37396176 37396318 -64476851 + MIR SINE MIR 101 262 0 3241 136 40 0 chr13 37396464 37396970 -64476199 + L1MC2 LINE L1 5531 6056 -288 408 121 0 0 chr13 37397605 37397663 -64475506 - AluS SINE Alu -252 59 2 332 250 42 10 chr13 37397763 37397859 -64475310 + MER5B DNA MER1_type 7 105 -73 1462 125 36 20 chr13 37398174 37398422 -64474747 - L1MA5A LINE L1 0 6297 6046 2177 245 55 33 chr13 37398439 37399218 -64473951 + L1M3f LINE L1 560 1342 -4136 1724 127 109 8 chr13 37399218 37399485 -64473684 - AluSx SINE Alu -18 294 1 2177 245 55 33 chr13 37399485 37399527 -64473642 + L1M3f LINE L1 1342 1382 -4096 1028 157 27 11 chr13 37399534 37399719 -64473450 + L1 LINE L1 4828 5015 -1131 3784 174 25 117 chr13 37399740 37400709 -64472460 - MER21A LTR ERV1 -28 903 24 306 67 0 0 chr13 37400710 37400755 -64472414 + (CA)n Simple_repeat Simple_repeat 2 46 0 879 219 0 0 chr13 37400954 37401100 -64472069 - AluJb SINE Alu -27 285 140 508 135 9 72 chr13 37401101 37401212 -64471957 + L1MA4 LINE L1 6186 6289 -11 379 223 140 78 chr13 37402301 37402494 -64470675 - MER63A DNA MER1_type -5 205 1 2831 85 3 0 chr13 37402577 37402940 -64470229 - THE1B LTR MaLR 0 364 1 374 237 81 116 chr13 37404071 37404244 -64468925 + L2 LINE L2 3112 3278 -35 435 180 112 48 chr13 37405018 37405167 -64468002 - MSTD LTR MaLR 0 396 204 180 189 0 0 chr13 37405167 37405204 -64467965 - MIR SINE MIR -220 42 6 501 156 148 16 chr13 37405320 37405448 -64467721 - MSTD LTR MaLR -215 150 6 272 189 8 118 chr13 37405460 37405499 -64467670 - L1ME3A LINE L1 -95 6075 6033 3477 104 67 43 chr13 37405499 37405528 -64467641 + LTR9 LTR ERV1 1 28 -584 2390 57 0 13 chr13 37405528 37405829 -64467340 + AluY SINE Alu 1 297 -14 3477 104 67 43 chr13 37405829 37406397 -64466772 + LTR9 LTR ERV1 28 612 0 272 189 8 118 chr13 37406397 37406484 -64466685 - L1ME3A LINE L1 -137 6033 5963 301 180 45 108 chr13 37406511 37406622 -64466547 - L1ME3A LINE L1 -202 5982 5879 2209 104 3 0 chr13 37406944 37407231 -64465938 + AluSp SINE Alu 1 288 -25 838 154 0 0 chr13 37407407 37407537 -64465632 + FLAM_A SINE Alu 13 142 0 24 0 0 0 chr13 37408990 37409014 -64464155 + AT_rich Low_complexity Low_complexity 1 24 0 2215 108 0 3 chr13 37409014 37409310 -64463859 - AluSg SINE Alu -14 296 2 1855 171 25 33 chr13 37409338 37409706 -64463463 - MLT1A1 LTR MaLR 0 365 1 1841 161 0 20 chr13 37409891 37410190 -64462979 - AluSx SINE Alu -19 293 1 2275 105 3 0 chr13 37410199 37410503 -64462666 - AluSg SINE Alu -5 305 1 667 155 172 17 chr13 37410878 37411052 -64462117 - MER4C LTR ERV1 0 465 265 2358 63 29 149 chr13 37411062 37411410 -64461759 - MER4A LTR ERV1 -244 420 32 2195 122 0 0 chr13 37411410 37411713 -64461456 + AluSq SINE Alu 1 303 -10 2105 120 0 3 chr13 37411719 37412047 -64461122 + AluSx SINE Alu 1 327 0 2358 63 29 149 chr13 37412047 37412167 -64461002 - MER4A LTR ERV1 -637 27 1 439 265 85 27 chr13 37412376 37412636 -64460533 + L1ME4a LINE L1 5764 6038 -83 2267 111 3 13 chr13 37412934 37413241 -64459928 - AluSx SINE Alu -8 304 1 2254 91 0 0 chr13 37413254 37413540 -64459629 - AluY SINE Alu -5 306 21 2016 69 0 23 chr13 37413577 37413839 -64459330 - AluY SINE Alu -55 256 1 850 143 0 0 chr13 37413942 37414075 -64459094 - FLAM_C SINE Alu 0 133 1 263 240 27 0 chr13 37414091 37414166 -64459003 + L1MEc LINE L1 1801 1877 -4519 220 336 25 34 chr13 37414188 37414307 -64458862 - MIR SINE MIR -64 198 81 619 130 37 0 chr13 37414838 37414946 -64458223 + L1MA5A LINE L1 6182 6293 -4 33 35 0 17 chr13 37414965 37415009 -64458160 + AT_rich Low_complexity Low_complexity 1 45 -12 831 163 0 0 chr13 37415009 37415132 -64458037 - FLAM_C SINE Alu -10 123 1 33 35 0 17 chr13 37415132 37415145 -64458024 + AT_rich Low_complexity Low_complexity 45 57 0 281 79 0 0 chr13 37415378 37415416 -64457753 + Alu SINE Alu 1 38 -263 3893 100 7 8 chr13 37415483 37416082 -64457087 - HERVE LTR ERV1 -3967 3846 3249 3925 102 3 8 chr13 37416545 37417146 -64456023 - HERVE LTR ERV1 -3967 3846 3249 2799 108 0 7 chr13 37417224 37417659 -64455510 - HERVE LTR ERV1 -3979 3834 3403 1613 108 4 12 chr13 37417653 37417912 -64455257 - HERVE LTR ERV1 -4308 3505 3249 * 2994 99 0 5 chr13 37418381 37418827 -64454342 - HERVE LTR ERV1 -3967 3846 3403 1642 100 4 12 chr13 37418821 37419080 -64454089 - HERVE LTR ERV1 -4308 3505 3249 * 381 292 67 120 chr13 37419213 37419679 -64453490 - L1M4b LINE L1 -6122 737 297 476 263 72 31 chr13 37419700 37419993 -64453176 + SATR1 Satellite Satellite 142 446 -24 * 502 267 216 25 chr13 37419778 37420415 -64452754 + SATR1 Satellite Satellite 1 758 -4 330 26 0 0 chr13 37422252 37422291 -64450878 + (CA)n Simple_repeat Simple_repeat 2 40 0 219 103 0 0 chr13 37422451 37422490 -64450679 + (GA)n Simple_repeat Simple_repeat 2 40 0 309 296 56 5 chr13 37422493 37422689 -64450480 - L1M4 LINE L1 -1296 4850 4645 21 0 0 0 chr13 37423088 37423109 -64450060 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr13 37423556 37423598 -64449571 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr13 37424939 37424961 -64448208 + AT_rich Low_complexity Low_complexity 1 22 0 972 216 19 130 chr13 37425533 37425895 -64447274 + MER52A LTR ERV1 650 971 -784 873 293 3 24 chr13 37425863 37426157 -64447012 + LTR28 LTR ERV1 437 724 -296 * 232 216 0 126 chr13 37426203 37426314 -64446855 + MER52A LTR ERV1 1363 1459 -296 237 323 8 23 chr13 37426341 37426474 -64446695 + MER52A LTR ERV1 1608 1738 -17 230 269 234 0 chr13 37427483 37427628 -64445541 - MIR SINE MIR -1 261 83 389 354 19 19 chr13 37428160 37428369 -64444800 - L2 LINE L2 -1068 2246 2038 1982 321 132 39 chr13 37429973 37431395 -64441774 - L2 LINE L2 -1269 2045 492 25 0 0 0 chr13 37431948 37431973 -64441196 + AT_rich Low_complexity Low_complexity 1 25 0 403 328 8 0 chr13 37432379 37432498 -64440671 + L2 LINE L2 3153 3272 0 577 247 29 6 chr13 37434182 37434356 -64438813 + MER5B DNA MER1_type 1 178 0 281 219 14 0 chr13 37434689 37434762 -64438407 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 27 29 0 0 chr13 37435595 37435629 -64437540 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 37435999 37436020 -64437149 + AT_rich Low_complexity Low_complexity 1 21 0 2336 211 33 22 chr13 37437518 37438517 -64434652 + L1MC1 LINE L1 4810 5917 -416 743 189 85 0 chr13 37438535 37438699 -64434470 + L1MC1 LINE L1 6083 6260 -73 1964 191 76 56 chr13 37438701 37438792 -64434377 - MER44D DNA MER2_type -1882 605 517 2326 142 37 28 chr13 37438792 37439221 -64433948 - Tigger2a DNA MER2_type -1 433 1 1964 191 76 56 chr13 37439221 37439315 -64433854 - MER44D DNA MER2_type -1970 517 426 1890 127 46 62 chr13 37439315 37439357 -64433812 - THE1B LTR MaLR 0 364 323 2284 99 3 0 chr13 37439357 37439659 -64433510 + AluSq SINE Alu 1 303 -10 1890 127 46 62 chr13 37439659 37439986 -64433183 - THE1B LTR MaLR -41 323 1 1964 191 76 56 chr13 37439986 37440338 -64432831 - MER44D DNA MER2_type -2061 426 1 260 149 60 45 chr13 37440342 37440409 -64432760 + L1MC1 LINE L1 6265 6332 -1 218 382 32 0 chr13 37440560 37440683 -64432486 - L2 LINE L2 -276 3037 2911 296 263 59 17 chr13 37441472 37441590 -64431579 + HAL1 LINE L1 1519 1641 -866 525 302 91 32 chr13 37442072 37442484 -64430685 + L1MEc LINE L1 2158 2564 -3651 339 365 35 10 chr13 37442485 37442688 -64430481 - LTR52-int LTR ERVL -543 3013 2806 4287 278 79 65 chr13 37442700 37442928 -64430241 - LTR52-int LTR ERVL -1113 2443 2220 234 0 0 0 chr13 37442928 37442954 -64430215 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4287 278 79 65 chr13 37442954 37445134 -64428035 - LTR52-int LTR ERVL -1336 2220 1 440 228 48 68 chr13 37445246 37445452 -64427717 - LTR52 LTR ERVL -205 216 15 273 169 156 0 chr13 37445503 37445580 -64427589 + L1MA9 LINE L1 6217 6305 -7 2371 100 7 0 chr13 37445751 37446060 -64427109 - AluSx SINE Alu 0 312 2 1205 201 106 19 chr13 37446183 37446542 -64426627 + MLT1B LTR MaLR 1 390 0 233 164 284 0 chr13 37446555 37446622 -64426547 - MLT1H LTR MaLR -43 506 421 315 359 24 14 chr13 37447271 37447480 -64425689 - MLT1I LTR MaLR -3 406 196 317 399 45 30 chr13 37447977 37448245 -64424924 - L2 LINE L2 -4 3268 2997 21 0 0 0 chr13 37448864 37448885 -64424284 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 37448993 37449022 -64424147 + AT_rich Low_complexity Low_complexity 1 29 0 1564 112 0 0 chr13 37450585 37450826 -64422343 - L1MA3 LINE L1 -1 6304 6064 214 211 66 13 chr13 37450826 37450902 -64422267 + (TTTAA)n Simple_repeat Simple_repeat 4 83 0 21577 170 10 10 chr13 37450906 37451394 -64421775 - L1PA11 LINE L1 0 6174 5688 2485 84 0 0 chr13 37451394 37451702 -64421467 + AluY SINE Alu 1 308 -3 21577 170 10 10 chr13 37451702 37456126 -64417043 - L1PA11 LINE L1 -486 5688 1261 592 175 29 0 chr13 37456126 37456229 -64416940 - U6 snRNA snRNA 0 107 2 879 259 92 45 chr13 37456573 37457087 -64416082 - L1ME1 LINE L1 -3 6163 5630 12851 113 8 38 chr13 37457129 37459536 -64413633 + L1P3 LINE L1 1 2390 -4071 1039 241 36 53 chr13 37459645 37459881 -64413288 - L1ME1 LINE L1 -1009 5137 4907 2432 63 23 0 chr13 37459881 37460183 -64412986 - AluY SINE Alu -2 309 1 1039 241 36 53 chr13 37460183 37460303 -64412866 - L1ME1 LINE L1 -1239 4907 4787 1290 198 145 26 chr13 37460714 37461120 -64412049 - MER66B LTR ERV1 0 486 97 565 163 0 0 chr13 37461265 37461351 -64411818 - AluJ/FRAM SINE Alu -8 304 219 407 160 25 25 chr13 37461760 37461879 -64411290 + CT-rich Low_complexity Low_complexity 3 121 0 206 281 0 16 chr13 37462462 37462526 -64410643 - L2 LINE L2 -1 3312 3250 2157 107 37 0 chr13 37462723 37463022 -64410147 + AluSx SINE Alu 1 310 -2 267 83 0 21 chr13 37463797 37463845 -64409324 - L1MB4 LINE L1 -4 6176 6130 217 284 0 102 chr13 37463890 37464017 -64409152 + L2 LINE L2 7 120 -3194 240 162 0 0 chr13 37464031 37464068 -64409101 - MER63 DNA MER1_type -893 37 1 308 179 9 38 chr13 37464131 37464237 -64408932 + CT-rich Low_complexity Low_complexity 2 104 0 272 294 54 11 chr13 37464273 37464365 -64408804 - MIR SINE MIR -16 246 151 1725 190 0 13 chr13 37464390 37464700 -64408469 - AluJo SINE Alu -4 308 3 293 219 0 61 chr13 37464722 37464746 -64408423 - MIR SINE MIR -1 261 237 3048 126 108 24 chr13 37464746 37465295 -64407874 - LTR49 LTR ERV1 0 595 1 293 219 0 61 chr13 37465295 37465352 -64407817 - MIR SINE MIR -25 237 185 216 0 0 0 chr13 37465364 37465388 -64407781 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr13 37465496 37465517 -64407652 + AT_rich Low_complexity Low_complexity 1 21 0 2131 116 24 3 chr13 37465670 37465963 -64407206 - AluSx SINE Alu -13 299 1 341 305 199 0 chr13 37466267 37466418 -64406751 + MER5A DNA MER1_type 9 189 0 196 304 51 13 chr13 37466474 37466553 -64406616 + L2 LINE L2 2715 2796 -518 2183 99 0 0 chr13 37466716 37466988 -64406181 + AluSg SINE Alu 1 272 -38 769 185 0 0 chr13 37467290 37467425 -64405744 - FLAM_C SINE Alu -2 141 7 2144 117 0 3 chr13 37467506 37467797 -64405372 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr13 37468541 37468564 -64404605 + AT_rich Low_complexity Low_complexity 1 23 0 201 74 0 0 chr13 37468564 37468591 -64404578 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1786 142 35 35 chr13 37468613 37468803 -64404366 - AluJo SINE Alu -1 311 119 231 36 0 0 chr13 37468803 37468831 -64404338 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1786 142 35 35 chr13 37468831 37468951 -64404218 - AluJo SINE Alu -192 120 1 1950 138 9 52 chr13 37468983 37469308 -64403861 + AluSx SINE Alu 2 312 0 301 56 0 0 chr13 37469467 37469503 -64403666 - MLT2B1 LTR ERVL -8 507 472 296 200 13 0 chr13 37469538 37469613 -64403556 + (TA)n Simple_repeat Simple_repeat 1 76 0 230 203 127 0 chr13 37469626 37469705 -64403464 + L1MC4 LINE L1 6617 6705 -1337 2220 112 3 0 chr13 37469740 37470045 -64403124 - AluSx SINE Alu -3 309 4 1611 140 186 69 chr13 37470056 37470464 -64402705 - MLT2B1 LTR ERVL -63 457 2 189 173 19 39 chr13 37470581 37470633 -64402536 - L2 LINE L2 0 3313 3263 1627 185 46 80 chr13 37470761 37470824 -64402345 - MLT1D LTR MaLR -2 503 439 2208 119 3 0 chr13 37470824 37471126 -64402043 + AluSx SINE Alu 1 303 -9 1627 185 46 80 chr13 37471126 37471490 -64401679 - MLT1D LTR MaLR -66 439 117 40 37 0 0 chr13 37471491 37471545 -64401624 + AT_rich Low_complexity Low_complexity 1 54 0 1041 128 0 0 chr13 37471560 37471701 -64401468 - AluJb SINE Alu -171 141 1 424 224 47 47 chr13 37471708 37471815 -64401354 - MLT1D LTR MaLR -398 107 1 1305 114 0 0 chr13 37472010 37472185 -64400984 - AluSq SINE Alu -8 305 131 1763 77 0 46 chr13 37472234 37472349 -64400820 - L1PA8 LINE L1 -1 6171 6052 188 35 35 0 chr13 37472349 37472378 -64400791 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2283 96 0 0 chr13 37472378 37472660 -64400509 - AluSg1 SINE Alu -27 282 1 1763 77 0 46 chr13 37472660 37472802 -64400367 - L1PA8 LINE L1 -118 6054 5925 1980 37 0 8 chr13 37472804 37473046 -64400123 + L1PA8 LINE L1 5690 5929 -243 477 110 0 0 chr13 37474952 37475025 -64398144 + (TC)n Simple_repeat Simple_repeat 2 74 0 4904 110 49 15 chr13 37475057 37475810 -64397359 - MER4E LTR ERV1 0 779 1 2561 56 7 3 chr13 37475992 37476297 -64396872 - AluSq SINE Alu -6 307 2 1886 149 7 16 chr13 37476319 37476627 -64396542 + AluJb SINE Alu 1 305 -7 2305 118 0 6 chr13 37476627 37476941 -64396228 + AluSx SINE Alu 1 312 0 238 115 39 0 chr13 37477056 37477108 -64396061 + (TA)n Simple_repeat Simple_repeat 1 54 0 1427 179 33 0 chr13 37477126 37477399 -64395770 - L1MB4 LINE L1 -7 6173 5892 441 332 86 17 chr13 37478538 37478770 -64394399 + MIR SINE MIR 7 254 -8 207 139 0 0 chr13 37479280 37479316 -64393853 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 722 75 5 101 chr13 37479327 37479526 -64393643 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 394 162 10 10 chr13 37479536 37479635 -64393534 + CT-rich Low_complexity Low_complexity 2 100 0 2116 93 40 13 chr13 37479638 37479939 -64393230 - AluSx SINE Alu -3 309 1 206 300 27 64 chr13 37481534 37481644 -64391525 + MIR SINE MIR 30 135 -73 214 143 24 24 chr13 37482758 37482800 -64390369 - MIR SINE MIR -149 113 72 184 259 17 17 chr13 37484343 37484401 -64388768 + MIR SINE MIR 201 258 -4 390 226 165 12 chr13 37484690 37484854 -64388315 - L1MC5 LINE L1 -36 7925 7737 2223 92 7 14 chr13 37485030 37485324 -64387845 + AluSq SINE Alu 1 292 -21 2719 192 39 29 chr13 37485710 37485764 -64387405 - L1MB8 LINE L1 -15 6163 6111 1550 188 15 0 chr13 37485764 37486025 -64387144 + AluJb SINE Alu 1 265 -47 2108 71 4 11 chr13 37486025 37486293 -64386876 + AluSp SINE Alu 43 308 -5 2719 192 39 29 chr13 37486293 37486853 -64386316 - L1MB8 LINE L1 -66 6112 5542 250 279 59 0 chr13 37487016 37487084 -64386085 + Charlie7 DNA MER1_type 3 74 -2538 187 299 13 39 chr13 37487386 37487463 -64385706 + MIR SINE MIR 28 102 -106 331 270 110 57 chr13 37488402 37488489 -64384680 - L2 LINE L2 -17 3296 3215 2097 102 54 3 chr13 37488489 37488783 -64384386 + AluSq SINE Alu 1 309 -4 331 270 110 57 chr13 37488783 37488958 -64384211 - L2 LINE L2 -98 3215 3020 339 274 25 89 chr13 37489617 37489774 -64383395 + L2 LINE L2 3165 3311 -2 2136 125 7 0 chr13 37490302 37490607 -64382562 + AluSx SINE Alu 1 307 -5 341 238 127 75 chr13 37490817 37491178 -64381991 + L1ME4a LINE L1 5653 6032 -89 347 269 34 7 chr13 37491456 37491605 -64381564 + (TA)n Simple_repeat Simple_repeat 2 154 0 2584 138 21 25 chr13 37491606 37492041 -64381128 - Tigger2a DNA MER2_type -1 433 1 2305 94 7 0 chr13 37492316 37492614 -64380555 - AluSx SINE Alu -12 300 1 788 293 166 43 chr13 37492661 37493274 -64379895 - L2 LINE L2 -5 3308 2772 1535 54 5 0 chr13 37493274 37493460 -64379709 + U2 snRNA snRNA 1 187 -1 788 293 166 43 chr13 37493460 37493488 -64379681 - L2 LINE L2 -541 2772 2749 2019 107 4 0 chr13 37493488 37493751 -64379418 + AluSg SINE Alu 1 264 -46 788 293 166 43 chr13 37493751 37494111 -64379058 - L2 LINE L2 -564 2749 2193 2326 107 0 0 chr13 37494591 37494900 -64378269 + AluSx SINE Alu 1 309 -3 24 0 0 0 chr13 37494950 37494974 -64378195 + AT_rich Low_complexity Low_complexity 1 24 0 593 230 0 2 chr13 37497973 37498160 -64375009 + MER58A DNA MER1_type 4 220 -4 1587 185 13 23 chr13 37498560 37498862 -64374307 + AluJo SINE Alu 1 299 -13 468 254 79 0 chr13 37499443 37499569 -64373600 + MER117 DNA MER1_type 10 145 -52 583 177 0 0 chr13 37500093 37500189 -64372980 - Tigger7 DNA MER2_type -2 2485 2390 1404 202 20 0 chr13 37500193 37500446 -64372723 - Tigger7 DNA MER2_type -2224 263 6 211 286 0 18 chr13 37501447 37501503 -64371666 + L2 LINE L2 3252 3306 -7 2339 111 0 0 chr13 37502751 37503058 -64370111 - AluSx SINE Alu -5 307 1 457 196 61 68 chr13 37503363 37503526 -64369643 - MER112 DNA MER1_type -81 179 18 187 279 114 0 chr13 37503541 37503620 -64369549 - MIR SINE MIR -98 164 77 2141 118 0 10 chr13 37503672 37503968 -64369201 - AluSg SINE Alu -17 293 1 324 239 18 0 chr13 37504076 37504185 -64368984 + (TTA)n Simple_repeat Simple_repeat 1 111 0 1743 165 0 26 chr13 37504207 37504510 -64368659 - AluJb SINE Alu -16 296 2 249 67 0 0 chr13 37504647 37504677 -64368492 - Alu SINE Alu -128 47 18 2221 108 0 35 chr13 37505790 37506104 -64367065 - AluSq SINE Alu -10 303 1 279 326 59 8 chr13 37506111 37506251 -64366918 - MIR SINE MIR -62 146 14 297 314 8 40 chr13 37506739 37506798 -64366371 - MIR SINE MIR -6 256 197 2288 88 7 13 chr13 37506798 37507105 -64366064 - AluSx SINE Alu -7 305 1 297 314 8 40 chr13 37507105 37507169 -64366000 - MIR SINE MIR -65 197 137 659 132 0 0 chr13 37507678 37507798 -64365371 - AluSx SINE Alu 0 313 194 1073 121 0 0 chr13 37507799 37507940 -64365229 - AluSx SINE Alu -172 141 1 24 32 0 0 chr13 37508880 37508911 -64364258 + AT_rich Low_complexity Low_complexity 1 31 0 886 110 0 0 chr13 37508932 37509050 -64364119 - AluJb SINE Alu -194 118 1 505 118 0 0 chr13 37509462 37509538 -64363631 - AluJ/FLAM SINE Alu -235 77 2 1599 138 21 96 chr13 37509571 37509905 -64363264 + AluJo SINE Alu 1 309 -3 833 239 36 140 chr13 37510374 37510901 -64362268 + L2 LINE L2 2842 3313 0 2187 116 0 10 chr13 37511002 37511304 -64361865 + AluSx SINE Alu 1 299 -13 1296 156 125 8 chr13 37512155 37512411 -64360758 - L1MD3 LINE L1 -10 7985 7700 233 268 0 0 chr13 37512573 37512644 -64360525 - L1MC4 LINE L1 -368 7674 7604 1104 168 61 0 chr13 37512644 37512841 -64360328 - MER3 DNA MER1_type 0 209 1 738 178 259 0 chr13 37512915 37513089 -64360080 - MER20 DNA MER1_type 0 219 1 740 250 0 0 chr13 37513224 37513376 -64359793 - MER82 DNA MER2_type -500 153 2 425 318 57 5 chr13 37513539 37513731 -64359438 + MIR SINE MIR 46 247 -15 2230 110 3 13 chr13 37513766 37514076 -64359093 - AluSp SINE Alu -6 307 1 2361 94 3 0 chr13 37514475 37514774 -64358395 + AluSx SINE Alu 5 304 -8 1608 173 25 21 chr13 37515204 37515488 -64357681 - AluJo SINE Alu -27 285 1 325 212 197 23 chr13 37515498 37515630 -64357539 - L1M LINE L1 -697 5424 5270 2273 105 0 23 chr13 37516485 37516789 -64356380 + AluSx SINE Alu 1 297 -15 664 240 39 13 chr13 37516789 37516935 -64356234 + MER69A DNA AcHobo 22 174 -3 2541 110 3 30 chr13 37517353 37517566 -64355603 - THE1B LTR MaLR 0 364 164 2403 94 0 0 chr13 37517566 37517863 -64355306 + AluSc SINE Alu 1 297 -12 2541 110 3 30 chr13 37517863 37518021 -64355148 - THE1B LTR MaLR -200 164 3 2637 135 29 25 chr13 37518114 37518456 -64354713 - L1MB3 LINE L1 -7 6176 5830 2529 59 0 7 chr13 37518456 37518760 -64354409 - AluY SINE Alu -9 302 1 2637 135 29 25 chr13 37518760 37518905 -64354264 - L1MB3 LINE L1 -353 5830 5687 1972 136 0 3 chr13 37519035 37519322 -64353847 - AluSx SINE Alu -2 310 25 785 136 8 0 chr13 37519367 37519485 -64353684 + L1PA16 LINE L1 6039 6157 -9 21 57 0 0 chr13 37520743 37520778 -64352391 + AT_rich Low_complexity Low_complexity 1 35 0 387 287 55 29 chr13 37521048 37521276 -64351893 - MIR SINE MIR -23 239 3 685 193 8 0 chr13 37522054 37522173 -64350996 + MER58B DNA MER1_type 221 340 -1 811 293 86 40 chr13 37522321 37522751 -64350418 - LTR16A LTR ERVL 0 450 1 427 291 35 14 chr13 37524549 37524690 -64348479 - MIR SINE MIR -96 166 23 199 268 149 60 chr13 37525467 37525508 -64347661 + MIR SINE MIR 58 94 -168 2378 131 40 14 chr13 37525508 37525929 -64347240 + MSTB1 LTR MaLR 1 432 0 199 268 149 60 chr13 37525929 37526055 -64347114 + MIR SINE MIR 94 240 -22 229 267 105 0 chr13 37526097 37526183 -64346986 + MIR SINE MIR 68 162 -100 1436 212 54 59 chr13 37526183 37526589 -64346580 + MLT1C LTR MaLR 1 406 -61 2227 122 0 0 chr13 37526589 37526901 -64346268 - AluSx SINE Alu 0 312 1 1436 212 54 59 chr13 37526901 37526937 -64346232 + MLT1C LTR MaLR 406 441 -26 1994 94 42 14 chr13 37527415 37527701 -64345468 - AluSg SINE Alu -16 294 1 865 255 124 4 chr13 37528091 37528350 -64344819 + MER115 DNA AcHobo 401 690 -3 336 260 48 31 chr13 37528601 37528760 -64344409 + MLT1I LTR MaLR 293 409 0 2064 174 0 50 chr13 37528816 37529021 -64344148 - MLT1A1 LTR MaLR 0 365 186 1812 120 12 95 chr13 37529021 37529347 -64343822 + AluSc SINE Alu 1 299 -10 2064 174 0 50 chr13 37529347 37529525 -64343644 - MLT1A1 LTR MaLR -179 186 1 287 315 134 9 chr13 37529619 37529835 -64343334 + L2 LINE L2 1705 1947 -1367 30 0 0 0 chr13 37529884 37529914 -64343255 + AT_rich Low_complexity Low_complexity 1 30 0 280 236 179 85 chr13 37530375 37530587 -64342582 + L2 LINE L2 2026 2257 -1057 1038 235 77 9 chr13 37530638 37530851 -64342318 + L2 LINE L2 2391 2637 -677 308 222 12 25 chr13 37530851 37530932 -64342237 + MER116 DNA Mariner 1 80 0 1038 235 77 9 chr13 37530932 37531058 -64342111 + L2 LINE L2 2637 2753 -561 1827 142 7 27 chr13 37531078 37531201 -64341968 + AluJo SINE Alu 5 129 -183 288 0 0 0 chr13 37531201 37531233 -64341936 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1827 142 7 27 chr13 37531233 37531405 -64341764 + AluJo SINE Alu 129 294 -18 336 314 113 16 chr13 37531574 37531759 -64341410 + MIR SINE MIR 27 229 -33 324 303 56 14 chr13 37532086 37532228 -64340941 + MIR SINE MIR 63 210 -52 310 217 60 0 chr13 37532478 37532561 -64340608 + MER53 DNA DNA 6 93 -96 957 18 0 0 chr13 37533573 37533717 -64339452 + L1PA2 LINE L1 6046 6189 0 528 221 29 125 chr13 37533725 37533933 -64339236 - HAL1 LINE L1 -2317 190 3 2351 87 3 3 chr13 37534031 37534331 -64338838 - AluSc SINE Alu -9 300 1 274 346 31 16 chr13 37535283 37535410 -64337759 + LTR67 LTR ERVL 113 241 -316 414 284 8 8 chr13 37535479 37535606 -64337563 + LTR67 LTR ERVL 428 554 -3 1523 269 50 30 chr13 37536386 37536885 -64336284 - MER21B LTR ERV1 -38 825 317 198 200 22 0 chr13 37537218 37537263 -64335906 + L2 LINE L2 3227 3272 0 265 266 85 77 chr13 37537830 37538078 -64335091 - L1ME LINE L1 -224 5897 5648 2111 143 3 10 chr13 37538081 37538405 -64334764 - AluSx SINE Alu 0 322 1 316 338 25 0 chr13 37538484 37538641 -64334528 - L1ME LINE L1 -468 5653 5493 281 151 38 0 chr13 37538664 37538717 -64334452 - L1MA10 LINE L1 -2 6332 6278 258 269 132 12 chr13 37538725 37538892 -64334277 - L1ME LINE L1 -2330 5478 5292 874 101 122 0 chr13 37539103 37539251 -64333918 - LTR47A LTR ERVL -8 444 279 1495 213 14 70 chr13 37539527 37539941 -64333228 - MLT2C1 LTR ERVL -4 393 3 451 258 61 0 chr13 37540525 37540657 -64332512 - MIR SINE MIR -57 205 66 2464 160 44 0 chr13 37540838 37541245 -64331924 - MSTB LTR MaLR 0 426 2 2193 111 0 3 chr13 37542400 37542698 -64330471 + AluSx SINE Alu 1 297 -15 1233 177 357 0 chr13 37543039 37543434 -64329735 + L1ME4a LINE L1 5435 5970 -194 469 228 26 9 chr13 37543580 37543694 -64329475 - L1ME2 LINE L1 -9 6155 6040 2338 93 7 0 chr13 37543699 37544001 -64329168 - AluSx SINE Alu -7 305 2 2157 103 7 20 chr13 37544184 37544484 -64328685 + AluSx SINE Alu 1 296 -16 337 302 0 9 chr13 37544501 37544607 -64328562 + MIR SINE MIR 157 261 -1 194 289 19 0 chr13 37544771 37544823 -64328346 - L3 LINE CR1 -4 1573 1521 198 143 0 0 chr13 37545028 37545063 -64328106 + (TG)n Simple_repeat Simple_repeat 1 35 0 498 103 0 0 chr13 37547396 37547474 -64325695 + (TA)n Simple_repeat Simple_repeat 1 78 0 247 253 49 31 chr13 37547922 37548084 -64325085 + L1ME4a LINE L1 5955 6119 -2 301 279 16 15 chr13 37548166 37548337 -64324832 + L1ME LINE L1 5292 5463 -699 857 209 25 5 chr13 37548365 37548566 -64324603 + L1 LINE L1 5024 5228 -918 5467 141 71 5 chr13 37548758 37549878 -64323291 + L1MA5 LINE L1 5106 6300 0 2223 117 3 0 chr13 37550666 37550964 -64322205 - AluSx SINE Alu -13 299 1 2255 107 3 0 chr13 37550974 37551274 -64321895 - AluY SINE Alu -10 301 1 473 316 79 15 chr13 37551767 37552308 -64320861 - L1MC4a LINE L1 -414 5690 5264 1156 174 124 10 chr13 37552316 37552619 -64320550 + MER44D DNA MER2_type 1 455 -2032 229 19 19 74 chr13 37552619 37552673 -64320496 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1156 174 124 10 chr13 37552673 37552725 -64320444 + MER44D DNA MER2_type 455 500 -105 300 291 14 35 chr13 37553349 37553370 -64319799 + L1ME4a LINE L1 5981 6001 -120 853 237 101 9 chr13 37553370 37553589 -64319580 + MER8 DNA MER2_type 1 239 0 300 291 14 35 chr13 37553589 37553708 -64319461 + L1ME4a LINE L1 6001 6118 -3 802 159 15 0 chr13 37554543 37554675 -64318494 + MER44D DNA MER2_type 571 704 -1 321 90 8 90 chr13 37554675 37554808 -64318361 + (TA)n Simple_repeat Simple_repeat 2 123 0 1041 292 32 40 chr13 37554831 37555652 -64317517 - L1MC4a LINE L1 -918 5211 4398 359 258 108 52 chr13 37555783 37555977 -64317192 - L1MC4a LINE L1 -4443 1686 1482 296 266 209 33 chr13 37556115 37556416 -64316753 - L1MC4a LINE L1 -4862 1257 904 343 338 110 18 chr13 37556457 37556676 -64316493 - L1MC4a LINE L1 -5318 801 563 269 291 30 22 chr13 37556887 37557021 -64316148 - L1M4 LINE L1 -2616 3530 3396 1848 141 53 6 chr13 37558888 37559229 -64313940 + MLT1A1 LTR MaLR 1 357 -8 2120 118 0 10 chr13 37559424 37559721 -64313448 - AluSx SINE Alu -18 294 1 533 320 98 46 chr13 37560102 37560143 -64313026 + HAL1b LINE L1 42 79 -2428 189 94 0 0 chr13 37560143 37560175 -64312994 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 533 320 98 46 chr13 37560175 37560667 -64312502 + HAL1b LINE L1 79 1704 -803 1517 136 24 12 chr13 37561168 37561418 -64311751 + AluJo SINE Alu 49 301 -11 507 307 103 65 chr13 37561597 37562210 -64310959 + L1M4 LINE L1 4160 4795 -1351 1567 182 149 29 chr13 37562957 37563374 -64309795 - MLT1C LTR MaLR 0 467 1 532 347 116 22 chr13 37563715 37564157 -64309012 + L2 LINE L2 2781 3267 -5 2432 80 0 3 chr13 37565764 37566064 -64307105 - AluSc SINE Alu -10 299 1 3736 215 45 17 chr13 37566236 37566438 -64306731 - L1 LINE L1 -2900 3948 3753 2066 145 3 0 chr13 37566438 37566734 -64306435 - AluSx SINE Alu -15 297 1 3736 215 45 17 chr13 37566734 37567782 -64305387 - L1 LINE L1 -3095 3753 2661 422 291 42 91 chr13 37567782 37567831 -64305338 - L2 LINE L2 -580 2734 2684 2336 86 0 43 chr13 37567831 37568156 -64305013 - AluY SINE Alu 0 311 1 422 291 42 91 chr13 37568156 37568371 -64304798 - L2 LINE L2 -630 2684 2483 186 43 0 0 chr13 37568418 37568441 -64304728 + (TG)n Simple_repeat Simple_repeat 2 24 0 1812 117 0 0 chr13 37568625 37568899 -64304270 + L1P4 LINE L1 5402 5675 -486 631 263 23 107 chr13 37568909 37569145 -64304024 - MLT1I LTR MaLR -21 388 181 2059 106 0 0 chr13 37569145 37569431 -64303738 - AluSx SINE Alu 0 302 17 631 263 23 107 chr13 37569431 37569501 -64303668 - MLT1I LTR MaLR -228 181 107 297 270 27 0 chr13 37569976 37570050 -64303119 - MER5C DNA MER1_type -248 76 1 465 339 11 17 chr13 37570079 37570256 -64302913 - MIR3 SINE MIR -2 206 31 245 316 43 34 chr13 37570394 37570511 -64302658 + MIR SINE MIR 22 139 -123 1287 171 21 41 chr13 37570555 37571016 -64302153 + MLT1D LTR MaLR 1 497 -8 2277 82 24 0 chr13 37572318 37572609 -64300560 - AluSq SINE Alu -15 298 1 324 261 23 0 chr13 37572620 37572708 -64300461 + MIR SINE MIR 100 189 -73 23 33 0 0 chr13 37572752 37572782 -64300387 + AT_rich Low_complexity Low_complexity 1 30 0 1921 119 48 0 chr13 37573111 37573480 -64299689 - AluSx SINE Alu 0 382 1 1896 156 7 16 chr13 37574696 37575003 -64298166 - AluJo SINE Alu -8 304 1 210 71 0 0 chr13 37577302 37577330 -64295839 + (TA)n Simple_repeat Simple_repeat 2 29 0 192 125 0 0 chr13 37577334 37577366 -64295803 + (CA)n Simple_repeat Simple_repeat 1 32 0 250 274 14 0 chr13 37577610 37577683 -64295486 + MER117 DNA MER1_type 67 140 -57 875 272 68 57 chr13 37578151 37578621 -64294548 - MLT1J LTR MaLR -1 510 36 231 267 0 17 chr13 37579014 37579074 -64294095 - L2 LINE L2 0 3272 3214 443 336 0 8 chr13 37579136 37579264 -64293905 + L2 LINE L2 3187 3313 0 297 322 71 71 chr13 37579861 37580156 -64293013 + L2 LINE L2 2671 2965 -349 279 269 0 0 chr13 37580167 37580234 -64292935 + L2 LINE L2 3198 3264 -8 1280 49 6 0 chr13 37580768 37580931 -64292238 + L1PA4 LINE L1 5989 6152 -3 219 204 0 0 chr13 37580934 37580988 -64292181 + A-rich Low_complexity Low_complexity 1 54 0 1317 164 14 0 chr13 37581215 37581435 -64291734 - AluJb SINE Alu -3 309 87 2387 94 3 28 chr13 37581599 37581919 -64291250 - AluSx SINE Alu 0 312 1 1832 147 33 10 chr13 37582424 37582723 -64290446 - AluJb SINE Alu -5 307 2 4019 73 4 37 chr13 37582774 37583310 -64289859 - SVA Other Other -3 1383 866 336 292 64 40 chr13 37583869 37584071 -64289098 + L1MC4a LINE L1 4638 4844 -1302 363 23 0 0 chr13 37584465 37584509 -64288660 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chr13 37584773 37584808 -64288361 + AT_rich Low_complexity Low_complexity 1 35 0 247 294 17 25 chr13 37585367 37585486 -64287683 + GA-rich Low_complexity Low_complexity 1 118 0 1974 125 7 0 chr13 37585664 37585973 -64287196 + AluJo SINE Alu 1 311 0 624 299 13 0 chr13 37586130 37586287 -64286882 - MER5A DNA MER1_type 0 189 31 602 262 119 7 chr13 37586536 37586822 -64286347 + L1MC4a LINE L1 5597 5914 -1894 315 278 100 96 chr13 37586970 37587240 -64285929 - L1MC4a LINE L1 -1904 5904 5634 582 336 20 16 chr13 37587449 37587693 -64285476 + MLT1K LTR MaLR 106 350 -238 326 80 13 40 chr13 37587739 37587814 -64285355 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 984 175 132 70 chr13 37588290 37588787 -64284382 + LTR36 LTR ERV1 1 602 -9 191 209 35 12 chr13 37589290 37589340 -64283829 + CT-rich Low_complexity Low_complexity 4 58 -33 2281 65 3 37 chr13 37589340 37589661 -64283508 - AluY SINE Alu -1 310 1 191 209 35 12 chr13 37589661 37589696 -64283473 + CT-rich Low_complexity Low_complexity 58 91 0 461 194 20 0 chr13 37589713 37589822 -64283347 - L1MC4 LINE L1 0 8042 7671 5834 135 23 23 chr13 37590253 37591980 -64281189 - L1MA5A LINE L1 -1 6296 4559 1129 244 92 33 chr13 37592020 37592478 -64280691 - L1MC4 LINE L1 -124 7918 7434 198 307 117 51 chr13 37592596 37592733 -64280436 - L2 LINE L2 -232 3040 2895 204 289 36 108 chr13 37592748 37592914 -64280255 + L2 LINE L2 2883 3036 -236 443 248 30 38 chr13 37592926 37593059 -64280110 + MIR SINE MIR 13 144 -118 1386 170 98 48 chr13 37593081 37593417 -64279752 + MLT1A1 LTR MaLR 13 365 0 399 311 31 59 chr13 37593959 37594414 -64278755 + L2 LINE L2 693 2977 -336 233 189 11 84 chr13 37594457 37594647 -64278522 + (TTAA)n Simple_repeat Simple_repeat 4 179 0 1063 292 60 6 chr13 37594869 37595383 -64277786 - L1ME3A LINE L1 -230 5940 5399 197 250 23 0 chr13 37595550 37595594 -64277575 + L2 LINE L2 3261 3305 -8 26 0 0 0 chr13 37596346 37596372 -64276797 + AT_rich Low_complexity Low_complexity 1 26 0 1432 130 18 102 chr13 37596753 37596905 -64276264 - AluSq SINE Alu -52 261 143 2261 113 3 0 chr13 37596905 37597214 -64275955 - AluSx SINE Alu -2 310 1 1432 130 18 102 chr13 37597214 37597346 -64275823 - AluSq SINE Alu -170 143 1 401 305 75 59 chr13 37597409 37597848 -64275321 + HAL1 LINE L1 508 953 -1554 683 201 47 47 chr13 37597868 37597927 -64275242 + L1MD1 LINE L1 5996 6054 -188 1761 149 117 3 chr13 37597927 37598235 -64274934 + MER61A LTR ERV1 1 343 0 683 201 47 47 chr13 37598235 37598409 -64274760 + L1MD1 LINE L1 6053 6229 -13 2354 205 12 2 chr13 37598463 37599049 -64274120 - L1 LINE L1 -2377 3769 3178 1855 310 103 10 chr13 37599070 37600355 -64272814 + HAL1 LINE L1 1048 2451 -56 2169 126 0 0 chr13 37600400 37600702 -64272467 - AluSq SINE Alu -7 306 5 33 43 0 0 chr13 37600795 37600842 -64272327 + AT_rich Low_complexity Low_complexity 1 47 0 2131 160 21 8 chr13 37600856 37601231 -64271938 - MSTB LTR MaLR 0 426 47 397 324 9 0 chr13 37601572 37601677 -64271492 + L2 LINE L2 3206 3311 -2 333 269 13 0 chr13 37602833 37602911 -64270258 + L2 LINE L2 3235 3313 0 2406 91 0 19 chr13 37602985 37603303 -64269866 + AluSq SINE Alu 1 312 -1 1005 191 0 0 chr13 37603309 37603477 -64269692 + AluJo SINE Alu 121 288 -24 519 306 74 93 chr13 37603529 37603775 -64269394 - L2 LINE L2 -2 3270 3021 5091 90 18 26 chr13 37603775 37604555 -64268614 - L1MA2 LINE L1 -7 6297 5524 519 306 74 93 chr13 37604555 37604616 -64268553 - L2 LINE L2 -251 3021 2960 1265 210 34 27 chr13 37604616 37604911 -64268258 + AluJb SINE Alu 1 297 -5 519 306 74 93 chr13 37604911 37605073 -64268096 - L2 LINE L2 -312 2960 2809 5632 136 34 29 chr13 37605176 37606302 -64266867 - L1MA5A LINE L1 -1 6296 5165 777 133 0 0 chr13 37606402 37606522 -64266647 + AluSc SINE Alu 190 309 0 2015 77 0 11 chr13 37606563 37606835 -64266334 - AluY SINE Alu -2 309 41 21 0 0 0 chr13 37607187 37607208 -64265961 + AT_rich Low_complexity Low_complexity 1 21 0 229 356 130 9 chr13 37607639 37607754 -64265415 - L2 LINE L2 -7 3265 3137 180 97 0 0 chr13 37607898 37607929 -64265240 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1613 95 0 5 chr13 37609413 37609624 -64263545 + AluSp SINE Alu 94 303 -10 537 273 98 19 chr13 37610091 37610296 -64262873 + L2 LINE L2 3015 3235 -78 1938 215 107 38 chr13 37610296 37610878 -64262291 - MLT1E2 LTR MaLR -4 622 1 1524 229 17 67 chr13 37610884 37611290 -64261879 - MLT1E2-int LTR MaLR -15 1356 971 712 305 5 10 chr13 37611476 37611673 -64261496 - MLT1E2-int LTR MaLR -484 887 692 1054 229 84 46 chr13 37611690 37612035 -64261134 + L1ME2 LINE L1 5806 6163 -1 207 0 0 0 chr13 37612082 37612105 -64261064 + (TA)n Simple_repeat Simple_repeat 1 23 0 962 171 136 11 chr13 37612105 37612281 -64260888 - AluJb SINE Alu -28 284 87 2364 170 8 31 chr13 37612288 37612770 -64260399 - L1MB4 LINE L1 0 6180 5710 392 213 37 37 chr13 37612772 37612880 -64260289 - L1ME LINE L1 -385 5779 5672 220 217 0 0 chr13 37613158 37613204 -64259965 + L2 LINE L2 3268 3313 0 636 304 190 21 chr13 37613289 37613762 -64259407 + L2 LINE L2 1527 2079 -1235 449 342 149 32 chr13 37613952 37614486 -64258683 + L2 LINE L2 2720 3313 0 716 335 84 16 chr13 37614536 37614903 -64258266 + L2 LINE L2 2462 2853 -461 195 100 0 0 chr13 37615987 37616017 -64257152 + (TA)n Simple_repeat Simple_repeat 1 30 0 1020 222 14 9 chr13 37616059 37616275 -64256894 + L1MC3 LINE L1 6592 6808 -977 24 53 0 0 chr13 37616421 37616459 -64256710 + AT_rich Low_complexity Low_complexity 1 38 0 517 337 6 12 chr13 37616781 37616947 -64256222 - MIR3 SINE MIR -24 184 20 420 212 10 0 chr13 37618064 37618163 -64255006 - L1M4 LINE L1 -1410 4805 4706 3986 223 42 44 chr13 37618194 37619825 -64253344 - L1MEc LINE L1 -2727 3488 1881 22 0 0 0 chr13 37621060 37621082 -64252087 + AT_rich Low_complexity Low_complexity 1 22 0 2413 110 100 3 chr13 37621437 37621827 -64251342 - MSTA LTR MaLR 0 428 1 22 56 0 0 chr13 37621916 37621952 -64251217 + AT_rich Low_complexity Low_complexity 1 36 0 1787 244 43 82 chr13 37622052 37622973 -64250196 - L1MEc LINE L1 -3193 3022 2237 1449 210 14 14 chr13 37622973 37623263 -64249906 - AluJo SINE Alu -22 290 1 1787 244 43 82 chr13 37623263 37623860 -64249309 - L1MEc LINE L1 -3978 2237 1618 676 95 0 0 chr13 37623974 37624069 -64249100 + AluS SINE Alu 1 95 -218 2828 250 77 11 chr13 37624078 37625261 -64247908 - L1M4c LINE L1 -3742 2902 1636 14742 181 20 12 chr13 37625265 37627324 -64245845 - L1PA13 LINE L1 -1 6162 4121 2500 62 7 3 chr13 37627324 37627630 -64245539 + AluY SINE Alu 1 307 -4 14742 181 20 12 chr13 37627630 37628045 -64245124 - L1PA13 LINE L1 -2042 4121 3711 210 71 0 0 chr13 37628045 37628073 -64245096 + (TTG)n Simple_repeat Simple_repeat 3 30 0 14742 181 20 12 chr13 37628073 37628984 -64244185 - L1PA13 LINE L1 -2452 3711 2742 2362 116 37 6 chr13 37628984 37629337 -64243832 + THE1B LTR MaLR 1 364 0 14742 181 20 12 chr13 37629337 37629752 -64243417 - L1PA13 LINE L1 -3421 2742 2332 1476 246 18 6 chr13 37629764 37630256 -64242913 - L1M4c LINE L1 -2613 4031 3534 1509 201 21 12 chr13 37630259 37630593 -64242576 - L1MC2 LINE L1 -80 6264 5928 3705 222 35 49 chr13 37630607 37631977 -64241192 - L1M4c LINE L1 -4072 2574 1137 437 252 0 0 chr13 37631977 37632080 -64241089 + U13 snRNA snRNA 1 103 -1 3705 222 35 49 chr13 37632080 37632265 -64240904 - L1M4c LINE L1 -5509 1137 951 505 155 3 8 chr13 37632257 37632356 -64240813 - L1M4c LINE L1 -5175 1469 1307 * 1100 252 33 34 chr13 37632375 37632757 -64240412 - L1M4c LINE L1 -5588 954 601 253 138 0 108 chr13 37632763 37632828 -64240341 + L1MC4 LINE L1 7924 8041 -1 569 295 167 9 chr13 37632838 37633048 -64240121 + MIR SINE MIR 20 262 0 180 0 0 0 chr13 37633565 37633585 -64239584 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 24 0 0 0 chr13 37634187 37634211 -64238958 + AT_rich Low_complexity Low_complexity 1 24 0 232 206 88 69 chr13 37634885 37635045 -64238124 - L1MCc LINE L1 -4955 607 445 186 103 0 0 chr13 37635085 37635114 -64238055 + (TC)n Simple_repeat Simple_repeat 1 29 0 1757 213 33 24 chr13 37635465 37635636 -64237533 + MSTB LTR MaLR 1 169 -257 2522 57 0 0 chr13 37635636 37635935 -64237234 + AluY SINE Alu 1 299 -12 2092 136 13 0 chr13 37635945 37636246 -64236923 + AluSx SINE Alu 1 305 -7 1757 213 33 24 chr13 37636246 37636485 -64236684 + MSTB LTR MaLR 177 426 0 3724 168 21 1 chr13 37636486 37637146 -64236023 + MSTB-int LTR MaLR 2 674 -977 1194 238 33 40 chr13 37637149 37637452 -64235717 + MLT2B3 LTR ERVL 254 554 0 682 169 63 7 chr13 37637452 37637594 -64235575 + MSTB-int LTR MaLR 1501 1650 -1 2082 160 71 22 chr13 37637595 37638001 -64235168 + MSTB LTR MaLR 1 426 0 565 182 36 0 chr13 37638001 37638110 -64235059 - FLAM_A SINE Alu -19 114 1 259 269 97 82 chr13 37638133 37638464 -64234705 - L1MCc LINE L1 -5704 366 31 21 36 0 0 chr13 37640251 37640279 -64232890 + AT_rich Low_complexity Low_complexity 1 28 0 1740 181 10 3 chr13 37641467 37641776 -64231393 + AluJo SINE Alu 1 311 -1 190 276 76 67 chr13 37642167 37642272 -64230897 + L2 LINE L2 1719 1824 -1490 7233 175 24 46 chr13 37642558 37643865 -64229304 + L1M1 LINE L1 1098 2367 -4482 2277 106 0 6 chr13 37643865 37644177 -64228992 - AluSg SINE Alu 0 310 1 7233 175 24 46 chr13 37644177 37644409 -64228760 + L1M1 LINE L1 2367 2603 -4246 1492 160 12 78 chr13 37644402 37644529 -64228640 + L1M1 LINE L1 5503 5637 -1336 * 6035 24 0 0 chr13 37644529 37645227 -64227942 - L1PA3 LINE L1 -3 6152 5455 1492 160 12 78 chr13 37645227 37645767 -64227402 + L1M1 LINE L1 5637 6230 -743 392 290 136 19 chr13 37646585 37646740 -64226429 - L2 LINE L2 -4 3268 3096 31902 94 9 24 chr13 37646821 37653122 -64220047 + L1PA8A LINE L1 144 6445 -1 312 191 0 16 chr13 37653188 37653251 -64219918 + MER20 DNA MER1_type 158 219 0 339 263 139 52 chr13 37653252 37653446 -64219723 + HAL1b LINE L1 634 844 -504 2883 228 41 2 chr13 37653852 37654465 -64218704 + MER82 DNA MER2_type 4 640 -13 247 159 32 32 chr13 37655838 37655901 -64217268 + (CGGGG)n Simple_repeat Simple_repeat 2 64 0 228 311 0 0 chr13 37658649 37658710 -64214459 - L2 LINE L2 -2 3270 3210 22 35 0 0 chr13 37658834 37658863 -64214306 + AT_rich Low_complexity Low_complexity 1 29 0 699 210 93 14 chr13 37659181 37659395 -64213774 + MIR SINE MIR 23 253 -9 972 164 97 10 chr13 37661981 37662000 -64211169 - L1 LINE L1 -758 5388 5372 1656 161 14 11 chr13 37662000 37662286 -64210883 - AluJo SINE Alu -25 287 1 972 164 97 10 chr13 37662286 37662473 -64210696 - L1 LINE L1 -774 5372 5164 293 262 131 16 chr13 37662470 37662592 -64210577 - L1ME LINE L1 -668 5453 5318 * 1915 146 6 22 chr13 37662622 37662938 -64210231 - AluJo SINE Alu -1 311 1 750 293 45 12 chr13 37663038 37663280 -64209889 + MIR SINE MIR 13 262 0 234 150 0 0 chr13 37663409 37663449 -64209720 + (TA)n Simple_repeat Simple_repeat 1 40 0 364 319 131 51 chr13 37663564 37663899 -64209270 + L1MEd LINE L1 51 412 -5707 410 304 122 45 chr13 37663918 37664320 -64208849 + L1MEd LINE L1 2317 2749 -3380 203 267 0 0 chr13 37664423 37664468 -64208701 - L2 LINE L2 -557 2757 2713 233 278 0 0 chr13 37664951 37665005 -64208164 - MIR3 SINE MIR -49 159 106 570 319 86 9 chr13 37665046 37665278 -64207891 - MIR SINE MIR -7 255 6 422 280 98 0 chr13 37665983 37666115 -64207054 + L2 LINE L2 1087 1231 -2083 2494 63 13 0 chr13 37666119 37666419 -64206750 - AluSx SINE Alu -8 304 1 2057 190 39 28 chr13 37666426 37666960 -64206209 + L1MC4a LINE L1 7215 7808 0 4388 250 92 60 chr13 37667000 37667891 -64205278 + L2 LINE L2 1245 2107 -1206 1096 150 0 6 chr13 37667891 37668058 -64205111 - L1PB3 LINE L1 0 6154 5989 4388 250 92 60 chr13 37668058 37668098 -64205071 + L2 LINE L2 2107 2144 -1169 2218 131 0 0 chr13 37668098 37668403 -64204766 - AluSx SINE Alu -7 305 1 4388 250 92 60 chr13 37668403 37669479 -64203690 + L2 LINE L2 2144 3300 -13 198 103 0 0 chr13 37669479 37669508 -64203661 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 405 214 292 68 chr13 37670071 37670263 -64202906 + MER102a DNA MER1_type 82 316 -14 225 368 0 0 chr13 37670952 37671028 -64202141 + L2 LINE L2 3150 3225 -47 227 371 109 0 chr13 37671393 37671568 -64201601 + L2 LINE L2 2090 2283 -1031 2353 151 38 21 chr13 37671711 37672129 -64201040 - MSTB1 LTR MaLR 0 432 8 194 280 70 40 chr13 37672658 37672758 -64200411 + MIR SINE MIR 112 214 -48 2150 142 0 0 chr13 37673116 37673427 -64199742 - AluSx SINE Alu -1 311 1 2238 82 0 0 chr13 37674154 37674467 -64198702 - AluY SINE Alu 0 313 1 217 236 236 0 chr13 37674589 37674661 -64198508 - L2 LINE L2 -35 3237 3149 237 269 58 87 chr13 37674676 37674780 -64198389 + L2 LINE L2 2920 3020 -252 3462 170 47 2 chr13 37674789 37675412 -64197757 - L1MA7 LINE L1 0 6291 5641 877 193 20 0 chr13 37675528 37675678 -64197491 - MER45A DNA AcHobo 0 178 26 1239 111 30 30 chr13 37675680 37675878 -64197291 - L1MA7 LINE L1 -685 5627 5430 817 185 23 0 chr13 37676270 37676400 -64196769 + MER45A DNA AcHobo 46 178 0 309 343 107 38 chr13 37677217 37677582 -64195587 + L2 LINE L2 2354 2743 -571 1953 196 96 10 chr13 37677587 37678005 -64195164 + MLT1C LTR MaLR 12 465 -2 1698 194 86 56 chr13 37678038 37678501 -64194668 + MLT2B1 LTR ERVL 2 478 -42 225 132 0 0 chr13 37678502 37678540 -64194629 + (CATA)n Simple_repeat Simple_repeat 1 38 0 252 310 218 21 chr13 37678819 37678961 -64194208 - L2 LINE L2 0 3272 3103 537 290 16 52 chr13 37678967 37679215 -64193954 + HAL1 LINE L1 158 396 -2111 1482 286 34 18 chr13 37679231 37679271 -64193898 + HAL1 LINE L1 1029 1067 -1440 1341 180 138 48 chr13 37679271 37679604 -64193565 + MLT1A1 LTR MaLR 1 363 -2 1482 286 34 18 chr13 37679604 37680115 -64193054 + HAL1 LINE L1 1067 1589 -918 1437 229 144 58 chr13 37680117 37680930 -64192239 + HAL1 LINE L1 1625 2507 0 2801 148 27 32 chr13 37680930 37681091 -64192078 + L1MB7 LINE L1 5661 5821 -363 1896 164 0 16 chr13 37681091 37681402 -64191767 + AluJo SINE Alu 1 306 -6 2801 148 27 32 chr13 37681402 37681767 -64191402 + L1MB7 LINE L1 5821 6184 0 361 250 0 19 chr13 37681781 37681885 -64191284 + MIR SINE MIR 147 248 -14 1040 218 13 18 chr13 37681900 37682129 -64191040 - MIR SINE MIR -27 235 8 192 289 53 40 chr13 37682244 37682320 -64190849 + L2 LINE L2 3136 3212 -60 667 236 67 20 chr13 37683119 37683314 -64189855 + MER97a DNA MER1_type? 14 217 -677 226 241 133 0 chr13 37683631 37683714 -64189455 + L2 LINE L2 3158 3251 -62 277 109 0 0 chr13 37685336 37685382 -64187787 + Alu SINE Alu 257 302 0 211 264 107 39 chr13 37687431 37687613 -64185556 - MIR SINE MIR 0 262 34 239 140 20 0 chr13 37687730 37687780 -64185389 + GA-rich Low_complexity Low_complexity 2 52 0 22 56 0 0 chr13 37687792 37687828 -64185341 + AT_rich Low_complexity Low_complexity 1 36 0 244 305 74 0 chr13 37689505 37689600 -64183569 - MIR SINE MIR -2 260 159 260 53 26 0 chr13 37689843 37689881 -64183288 + (CAT)n Simple_repeat Simple_repeat 3 41 0 204 97 0 0 chr13 37689881 37689912 -64183257 + (CAG)n Simple_repeat Simple_repeat 3 33 0 671 75 0 0 chr13 37690026 37690129 -64183040 - AluSg/x SINE Alu 0 306 204 2148 58 4 0 chr13 37690130 37690391 -64182778 - AluY SINE Alu -49 262 1 186 103 0 0 chr13 37690818 37690847 -64182322 + (TC)n Simple_repeat Simple_repeat 2 30 0 414 120 0 0 chr13 37690847 37690922 -64182247 + (CA)n Simple_repeat Simple_repeat 1 75 0 1956 112 48 10 chr13 37691403 37691716 -64181453 - L1MA5A LINE L1 0 6297 5973 254 272 74 0 chr13 37692308 37692446 -64180723 + MIR SINE MIR 34 146 -62 630 294 23 15 chr13 37692521 37692742 -64180427 - MIR SINE MIR -13 249 25 2074 106 47 13 chr13 37692888 37693189 -64179980 - AluSq SINE Alu -2 311 1 242 206 16 0 chr13 37694281 37694344 -64178825 + CT-rich Low_complexity Low_complexity 2 65 0 423 311 11 62 chr13 37694349 37694526 -64178643 - MIR SINE MIR -36 226 59 248 264 28 0 chr13 37694835 37694907 -64178262 + MIR SINE MIR 70 143 -65 2227 127 0 9 chr13 37695234 37695549 -64177620 - AluSx SINE Alu 0 312 1 606 316 58 82 chr13 37695550 37695691 -64177478 + L2 LINE L2 2937 3080 -192 1026 161 18 161 chr13 37695691 37695970 -64177199 + MER8 DNA MER2_type 1 239 0 606 316 58 82 chr13 37695970 37696170 -64176999 + L2 LINE L2 3080 3270 -2 545 184 203 18 chr13 37696491 37696654 -64176515 + MIR SINE MIR 70 262 0 476 324 166 8 chr13 37696787 37697028 -64176141 + L2 LINE L2 2994 3272 0 206 206 95 48 chr13 37697684 37697747 -64175422 - L2 LINE L2 -18 3254 3189 1890 143 40 13 chr13 37698006 37698307 -64174862 + 7SLRNA srpRNA srpRNA 5 313 -7 539 258 45 17 chr13 37698585 37698763 -64174406 + MIR3 SINE MIR 21 203 -5 290 294 297 21 chr13 37698780 37699113 -64174056 + L3b LINE CR1 1109 1533 -50 292 273 30 0 chr13 37699525 37699591 -64173578 - MIR SINE MIR -60 148 81 22 0 0 0 chr13 37699719 37699741 -64173428 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 37701795 37701823 -64171346 + AT_rich Low_complexity Low_complexity 1 28 0 2064 148 0 3 chr13 37702355 37702660 -64170509 - AluSx SINE Alu -8 304 1 337 305 21 43 chr13 37702850 37702991 -64170178 + MIR3 SINE MIR 47 184 -24 305 196 0 0 chr13 37703707 37703763 -64169406 + L2 LINE L2 3258 3313 0 10677 60 7 12 chr13 37704098 37705486 -64167683 - SVA Other Other -842 1386 1 201 74 0 0 chr13 37705484 37705511 -64167658 + (AGGGGG)n Simple_repeat Simple_repeat 5 31 0 274 369 28 14 chr13 37705568 37705709 -64167460 + MIR3 SINE MIR 3 145 -63 296 189 14 0 chr13 37706132 37706206 -64166963 + GA-rich Low_complexity Low_complexity 3 77 0 38 61 0 0 chr13 37706364 37706430 -64166739 + AT_rich Low_complexity Low_complexity 1 66 0 918 267 137 34 chr13 37707358 37707882 -64165287 - MLT1G1 LTR MaLR 0 595 18 2034 98 74 0 chr13 37709724 37710009 -64163160 + AluSx SINE Alu 1 306 -6 309 236 0 38 chr13 37710064 37710170 -64162999 + MER103 DNA DNA 56 157 -9 222 204 31 0 chr13 37710470 37710568 -64162601 + (TA)n Simple_repeat Simple_repeat 1 101 0 2463 71 3 0 chr13 37710631 37710939 -64162230 + AluY SINE Alu 1 309 -2 2333 112 0 0 chr13 37714023 37714327 -64158842 - AluSq SINE Alu -4 309 6 635 221 39 0 chr13 37715391 37715545 -64157624 + L1MA9 LINE L1 6005 6164 -148 228 143 0 0 chr13 37715545 37715587 -64157582 + (GAAA)n Simple_repeat Simple_repeat 1 42 0 357 188 8 117 chr13 37715587 37715715 -64157454 + L1MA9 LINE L1 6159 6272 -40 231 340 104 0 chr13 37716365 37716471 -64156698 + MIR SINE MIR 36 152 -110 21 0 0 0 chr13 37716505 37716526 -64156643 + AT_rich Low_complexity Low_complexity 1 21 0 582 237 46 26 chr13 37717214 37717366 -64155803 - MIR SINE MIR 0 262 108 181 300 0 0 chr13 37717364 37717414 -64155755 + L3b LINE CR1 1220 1269 -314 * 25 51 0 0 chr13 37720076 37720115 -64153054 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr13 37720243 37720269 -64152900 + AT_rich Low_complexity Low_complexity 1 26 0 245 340 135 7 chr13 37721616 37721757 -64151412 + L2 LINE L2 2218 2376 -938 2898 3 0 0 chr13 37721812 37722123 -64151046 - AluYa5 SINE Alu 0 311 1 187 350 36 21 chr13 37722141 37722281 -64150888 + L2 LINE L2 2399 2540 -774 2393 80 0 16 chr13 37723650 37723963 -64149206 - AluY SINE Alu 0 311 4 569 71 12 0 chr13 37724010 37724094 -64149075 - L1PA15 LINE L1 -22 6143 6059 403 281 92 7 chr13 37724162 37724315 -64148854 + MIR SINE MIR 93 258 -4 202 146 0 24 chr13 37725227 37725268 -64147901 + (TTTTTA)n Simple_repeat Simple_repeat 4 43 0 616 230 7 66 chr13 37725607 37725881 -64147288 - L1MEc LINE L1 -3631 2584 2327 * 4033 257 109 28 chr13 37725878 37726320 -64146849 - L1MEc LINE L1 -4525 1871 1466 2331 112 0 0 chr13 37726320 37726625 -64146544 - AluSg SINE Alu -5 305 1 4033 257 109 28 chr13 37726625 37727880 -64145289 - L1MEc LINE L1 -4930 1466 37 2256 107 3 0 chr13 37728808 37729107 -64144062 + AluSx SINE Alu 4 303 -9 2262 88 3 10 chr13 37730201 37730495 -64142674 - AluSp SINE Alu -21 292 1 193 263 125 75 chr13 37731462 37731622 -64141547 - L2 LINE L2 -233 3039 2872 351 0 0 0 chr13 37731637 37731676 -64141493 + (TG)n Simple_repeat Simple_repeat 2 40 0 760 146 82 58 chr13 37731832 37732003 -64141166 + FAM SINE Alu 1 175 0 1903 142 0 17 chr13 37732614 37732910 -64140259 - AluJb SINE Alu -2 310 20 1144 158 0 0 chr13 37733853 37734043 -64139126 - L1PA16 LINE L1 -9 6157 5968 235 134 30 45 chr13 37734044 37734111 -64139058 + T-rich Low_complexity Low_complexity 2 67 0 1832 145 7 14 chr13 37734119 37734409 -64138760 - AluJo SINE Alu -24 288 1 324 109 0 0 chr13 37734409 37734457 -64138712 - L1PA16 LINE L1 -191 5974 5924 250 320 140 0 chr13 37735217 37735317 -64137852 - MIR SINE MIR -78 184 71 4663 140 1 0 chr13 37735748 37736506 -64136663 - L1PA16 LINE L1 -25 6141 5383 731 246 126 0 chr13 37737372 37737555 -64135614 + MER58A DNA MER1_type 7 212 -12 1581 190 146 19 chr13 37737601 37738012 -64135157 - MLT1C LTR MaLR -4 463 1 392 306 31 65 chr13 37738135 37738406 -64134763 - L2 LINE L2 -113 3159 2901 284 289 93 10 chr13 37738417 37738514 -64134655 - MIR SINE MIR -152 110 6 2360 68 0 7 chr13 37739139 37739434 -64133735 - AluSc SINE Alu -16 293 1 876 111 0 8 chr13 37739621 37739747 -64133422 + FLAM_C SINE Alu 12 136 -7 333 291 160 19 chr13 37741887 37742093 -64131076 - L2 LINE L2 0 3313 3079 4105 143 16 14 chr13 37742197 37742903 -64130266 - MER39 LTR ERV1 0 707 1 474 340 8 16 chr13 37743441 37743691 -64129478 - L1MC4a LINE L1 -1876 5932 5685 268 341 82 22 chr13 37744146 37744328 -64128841 + L3b LINE CR1 1354 1546 -37 432 0 0 0 chr13 37744374 37744422 -64128747 + (CA)n Simple_repeat Simple_repeat 1 48 0 446 232 312 0 chr13 37745288 37745426 -64127743 + MER5A DNA MER1_type 9 189 0 190 211 79 0 chr13 37745868 37745906 -64127263 - L3 LINE CR1 -108 1469 1429 261 354 31 0 chr13 37746030 37746126 -64127043 - L2 LINE L2 -284 2988 2890 390 342 39 7 chr13 37746195 37746350 -64126819 - MER5A DNA MER1_type -29 160 1 806 251 6 0 chr13 37746358 37746529 -64126640 - MER5B DNA MER1_type 0 178 7 296 199 385 0 chr13 37747547 37747713 -64125456 - MIR SINE MIR -13 249 20 270 206 0 0 chr13 37747793 37747861 -64125308 + CT-rich Low_complexity Low_complexity 3 70 0 4992 258 47 35 chr13 37747882 37749348 -64123821 - L1ME1 LINE L1 -22 6144 4698 1630 223 19 58 chr13 37749348 37749832 -64123337 - LTR40c LTR ERVL 0 465 1 4992 258 47 35 chr13 37749832 37750851 -64122318 - L1ME1 LINE L1 -1468 4698 3694 884 36 9 0 chr13 37750851 37750963 -64122206 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 2216 105 0 0 chr13 37750968 37751254 -64121915 - AluSx SINE Alu -26 286 1 4992 258 47 35 chr13 37751254 37751951 -64121218 - L1ME1 LINE L1 -2475 3691 2882 932 190 23 0 chr13 37751951 37752172 -64120997 + L1MA5A LINE L1 6068 6293 -4 4992 258 47 35 chr13 37752172 37752469 -64120700 - L1ME1 LINE L1 -3284 2882 2590 442 250 96 45 chr13 37752475 37752631 -64120538 + MLT1F LTR MaLR 125 288 -302 454 228 44 37 chr13 37752699 37752835 -64120334 + MLT1F LTR MaLR 372 508 -34 243 357 35 39 chr13 37753190 37753445 -64119724 + L2 LINE L2 2356 2609 -705 458 183 13 2 chr13 37753760 37753996 -64119173 + AluJo SINE Alu 1 296 -16 380 290 117 9 chr13 37754000 37754231 -64118938 + LTR33 LTR ERVL 238 493 -28 189 107 0 0 chr13 37754988 37755016 -64118153 + (T)n Simple_repeat Simple_repeat 1 28 0 2237 132 96 69 chr13 37755187 37755413 -64117756 - L1MC2 LINE L1 -10 6334 6116 785 181 0 0 chr13 37755413 37755546 -64117623 - FLAM_A SINE Alu 0 133 1 2237 132 96 69 chr13 37755546 37755828 -64117341 - L1MC2 LINE L1 -228 6116 5812 61 45 0 0 chr13 37756373 37756462 -64116707 + AT_rich Low_complexity Low_complexity 1 89 0 2062 109 44 0 chr13 37756944 37757237 -64115932 + AluSp SINE Alu 1 306 -7 385 295 51 6 chr13 37757258 37757414 -64115755 + L1MCc LINE L1 19 181 -6242 1294 183 168 89 chr13 37757497 37757979 -64115190 - MLT2B1 LTR ERVL 0 520 1 667 288 81 60 chr13 37758102 37758633 -64114536 + L1MCc LINE L1 864 1405 -5018 546 262 31 4 chr13 37758658 37758883 -64114286 + L1MCc LINE L1 1492 1722 -5219 1703 219 63 6 chr13 37758937 37759444 -64113725 + L1M4 LINE L1 4829 5364 -782 500 206 23 8 chr13 37759434 37759565 -64113604 + L1M4 LINE L1 5217 5349 -797 * 252 0 0 0 chr13 37759565 37759593 -64113576 + (TA)n Simple_repeat Simple_repeat 1 28 0 297 71 0 0 chr13 37759595 37759637 -64113532 + L1ME2 LINE L1 6100 6141 -23 341 308 94 39 chr13 37760268 37760857 -64112312 + L1MCc LINE L1 1786 2512 -790 936 197 111 57 chr13 37761068 37761439 -64111730 - L1MC4a LINE L1 -1506 6302 5912 2151 130 0 9 chr13 37761529 37761844 -64111325 + AluSx SINE Alu 1 312 0 482 333 39 35 chr13 37762167 37762422 -64110747 - L3 LINE CR1 -792 785 530 205 298 0 0 chr13 37763915 37763962 -64109207 + MIR3 SINE MIR 161 207 -1 585 282 60 9 chr13 37764078 37764294 -64108875 - MIR SINE MIR -15 247 21 314 328 30 60 chr13 37765910 37766044 -64107125 + MIR3 SINE MIR 15 144 -64 722 246 120 25 chr13 37766376 37766733 -64106436 - MER57A LTR ERV1 0 403 27 2063 154 0 0 chr13 37767696 37768008 -64105161 - AluSx SINE Alu 0 312 1 292 167 69 28 chr13 37768021 37768093 -64105076 + MIR SINE MIR 149 223 -39 217 289 169 0 chr13 37768184 37768267 -64104902 - L3 LINE CR1 -105 1472 1376 1278 251 25 48 chr13 37768806 37769245 -64103924 - LTR16A LTR ERVL -1 449 21 483 331 29 69 chr13 37769389 37769866 -64103303 - ERVL LTR ERVL -381 5383 4926 1368 327 17 12 chr13 37770147 37770919 -64102250 - ERVL LTR ERVL -943 4542 3726 2367 90 0 3 chr13 37770955 37771255 -64101914 - AluSx SINE Alu -13 299 1 1251 302 14 21 chr13 37771326 37771570 -64101599 - LTR16B LTR ERVL 0 464 223 2318 115 3 0 chr13 37771570 37771874 -64101295 + AluSq SINE Alu 1 305 -8 1251 302 14 21 chr13 37771874 37772066 -64101103 - LTR16B LTR ERVL -241 223 31 1378 296 25 21 chr13 37772172 37773244 -64099925 - ERVL LTR ERVL -2466 2530 1334 663 163 16 8 chr13 37773241 37773370 -64099799 + HERV16 LTR ERVL 732 861 -4135 * 999 287 62 19 chr13 37773365 37773689 -64099480 + HERV16 LTR ERVL 984 1321 -3675 276 291 34 11 chr13 37774206 37774374 -64098795 - L1P3 LINE L1 -344 5828 5657 2383 81 0 10 chr13 37774542 37774866 -64098303 + AluSx SINE Alu 5 312 0 1216 175 34 8 chr13 37775228 37775496 -64097673 - L1MD3 LINE L1 0 7995 7721 318 187 0 13 chr13 37775498 37775573 -64097596 - L1MEc LINE L1 -6245 151 78 23 0 0 0 chr13 37775749 37775772 -64097397 + AT_rich Low_complexity Low_complexity 1 23 0 623 268 98 18 chr13 37776099 37776435 -64096734 + L1ME3A LINE L1 3836 4198 -1948 362 21 0 0 chr13 37776456 37776503 -64096666 - MADE1 DNA Mariner -33 47 1 478 295 39 60 chr13 37776592 37776727 -64096442 + L1ME3A LINE L1 4299 4435 -1711 2332 77 0 7 chr13 37776727 37777026 -64096143 + AluSg SINE Alu 1 297 -13 478 295 39 60 chr13 37777026 37777089 -64096080 + L1ME3A LINE L1 4435 4498 -1648 2280 106 0 3 chr13 37777089 37777391 -64095778 + AluSg SINE Alu 1 301 -9 478 295 39 60 chr13 37777391 37777737 -64095432 + L1ME3A LINE L1 4498 4832 -1314 1822 152 63 14 chr13 37777829 37778177 -64094992 - MLT1A1 LTR MaLR 0 365 1 235 242 70 47 chr13 37778346 37778474 -64094695 - MLT1J2 LTR MaLR -298 152 22 614 282 14 20 chr13 37778764 37779233 -64093936 + L1ME3A LINE L1 5175 5642 -522 286 260 39 31 chr13 37779250 37779377 -64093792 + L1ME3A LINE L1 5824 5951 -219 25 0 0 0 chr13 37779633 37779658 -64093511 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr13 37780268 37780292 -64092877 + AT_rich Low_complexity Low_complexity 1 24 0 7210 165 147 12 chr13 37780426 37781973 -64091196 + MER52A LTR ERV1 1 1755 0 407 313 92 6 chr13 37782005 37782397 -64090772 - LTR16B LTR ERVL -2 462 1 283 328 152 11 chr13 37782421 37782600 -64090569 + MIR SINE MIR 19 216 -46 2277 54 7 0 chr13 37782607 37782924 -64090245 + AluY SINE Alu 7 325 0 265 350 50 0 chr13 37783692 37783812 -64089357 + MIR3 SINE MIR 78 203 -5 401 247 171 0 chr13 37783955 37784101 -64089068 + MIR SINE MIR 3 173 -89 323 299 96 53 chr13 37784332 37784519 -64088650 - MIR SINE MIR -22 240 46 192 125 0 0 chr13 37784769 37784801 -64088368 + (A)n Simple_repeat Simple_repeat 1 32 0 25 51 0 0 chr13 37786447 37786486 -64086683 + AT_rich Low_complexity Low_complexity 1 39 0 1615 165 16 85 chr13 37786567 37786750 -64086419 - MLT1B LTR MaLR -2 388 245 2215 138 0 3 chr13 37786750 37787062 -64086107 - AluSx SINE Alu -1 311 1 1615 165 16 85 chr13 37787062 37787265 -64085904 - MLT1B LTR MaLR -145 245 29 312 120 0 0 chr13 37788172 37788222 -64084947 + (T)n Simple_repeat Simple_repeat 1 50 0 710 149 117 0 chr13 37789125 37789279 -64083890 - MLT1B LTR MaLR -180 210 39 27 0 0 0 chr13 37789469 37789496 -64083673 + AT_rich Low_complexity Low_complexity 1 27 0 270 125 0 0 chr13 37789528 37789576 -64083593 - L1MA4 LINE L1 -11 6289 6242 5224 141 69 23 chr13 37789592 37791618 -64081551 - L1MA4 LINE L1 -45 6255 4125 21 0 0 0 chr13 37791923 37791944 -64081225 + AT_rich Low_complexity Low_complexity 1 21 0 2100 146 0 56 chr13 37792701 37793058 -64080111 + MER1B DNA MER1_type 1 337 0 281 289 208 13 chr13 37793906 37794055 -64079114 + MER5A DNA MER1_type 7 184 -5 212 274 164 0 chr13 37795150 37795223 -64077946 - L2 LINE L2 -2 3311 3227 263 274 29 49 chr13 37795661 37795763 -64077406 + L2 LINE L2 3163 3262 -10 297 356 90 45 chr13 37795783 37796072 -64077097 + L2 LINE L2 213 514 -2800 1364 245 102 54 chr13 37796661 37797396 -64075773 - L1MC4a LINE L1 -1779 6029 5260 779 237 15 5 chr13 37797450 37797648 -64075521 - L1MC1 LINE L1 -1 6332 6133 7974 202 40 67 chr13 37797663 37799989 -64073180 - L1MCa LINE L1 -557 6056 3902 2789 7 0 0 chr13 37799989 37800292 -64072877 + AluY SINE Alu 1 303 -8 7974 202 40 67 chr13 37800292 37802048 -64071121 - L1MCa LINE L1 -2711 3902 2100 267 271 64 39 chr13 37802080 37802283 -64070886 - L1MC4a LINE L1 -2580 3566 3359 1951 149 7 3 chr13 37802316 37802618 -64070551 + AluJb SINE Alu 3 305 -7 641 296 162 35 chr13 37802630 37803457 -64069712 - L1MC4a LINE L1 -2806 3340 2409 1705 156 11 22 chr13 37804120 37804396 -64068773 + AluJo SINE Alu 12 284 -28 248 92 15 46 chr13 37804397 37804462 -64068707 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 197 366 37 0 chr13 37804771 37804853 -64068316 + L3 LINE CR1 810 894 -683 463 233 34 43 chr13 37804858 37805072 -64068097 + L1MEd LINE L1 1020 1270 -4910 405 288 89 22 chr13 37805094 37805418 -64067751 + L1MEd LINE L1 1323 1629 -861 274 222 0 32 chr13 37805646 37805709 -64067460 + MLT1L LTR MaLR 140 200 -415 335 305 103 35 chr13 37806087 37806261 -64066908 + L3 LINE CR1 972 1157 -420 601 319 22 86 chr13 37806262 37806575 -64066594 + L3 LINE CR1 1263 1555 -22 272 258 89 8 chr13 37806599 37806723 -64066446 - MER20B DNA MER1_type -1 782 649 737 244 140 25 chr13 37806774 37807053 -64066116 + MER46C DNA MER2_type 23 333 -5 23 0 0 0 chr13 37807539 37807562 -64065607 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 37808653 37808676 -64064493 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1822 183 31 28 chr13 37808844 37809204 -64063965 - MER47A DNA MER2_type 0 366 6 3208 143 45 22 chr13 37809298 37809900 -64063269 + L1MB7 LINE L1 5560 6175 -9 390 254 34 59 chr13 37809901 37810019 -64063150 - MER91A DNA MER1_type -40 156 42 2373 37 3 0 chr13 37810383 37810677 -64062492 + L1PA7 LINE L1 5857 6151 -3 219 120 60 20 chr13 37810992 37811042 -64062127 + (TTAAA)n Simple_repeat Simple_repeat 2 53 0 22 35 0 0 chr13 37811526 37811555 -64061614 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 37812014 37812043 -64061126 + AT_rich Low_complexity Low_complexity 1 29 0 1616 204 66 63 chr13 37812045 37812358 -64060811 - L1MC5 LINE L1 -48 7913 7596 2174 103 0 7 chr13 37812358 37812660 -64060509 - AluSg SINE Alu -10 300 1 1616 204 66 63 chr13 37812660 37812905 -64060264 - L1MC5 LINE L1 -365 7596 7353 2556 56 0 0 chr13 37813572 37813877 -64059292 - AluY SINE Alu -6 305 1 1940 124 17 10 chr13 37814952 37815242 -64057927 - AluSx SINE Alu -20 292 1 38 51 0 0 chr13 37815321 37815380 -64057789 + AT_rich Low_complexity Low_complexity 1 59 0 3573 147 5 7 chr13 37815470 37816042 -64057127 + L1PA16 LINE L1 5574 6144 -22 263 295 171 39 chr13 37816435 37816564 -64056605 + L2 LINE L2 3168 3313 0 254 283 9 88 chr13 37816835 37816948 -64056221 - MIR SINE MIR -124 138 35 21 36 0 0 chr13 37817168 37817196 -64055973 + AT_rich Low_complexity Low_complexity 1 28 0 1695 183 58 26 chr13 37817475 37817853 -64055316 - MLT1B LTR MaLR 0 390 1 1123 193 51 35 chr13 37818007 37818261 -64054908 - L1MB4 LINE L1 0 6180 5923 441 282 92 11 chr13 37818281 37818455 -64054714 - MIR3 SINE MIR -5 203 16 1352 171 18 73 chr13 37818506 37818762 -64054407 + MER33 DNA MER1_type 4 238 -2347 1966 125 4 0 chr13 37818762 37819041 -64054128 - AluSx SINE Alu -32 280 1 1352 171 18 73 chr13 37819041 37819124 -64054045 + MER33 DNA MER1_type 238 324 0 396 0 0 0 chr13 37819600 37819644 -64053525 + (ATG)n Simple_repeat Simple_repeat 2 45 0 721 273 53 24 chr13 37819650 37819859 -64053310 - MIR SINE MIR -9 253 39 320 324 38 0 chr13 37819935 37820040 -64053129 + MIR SINE MIR 148 256 -6 33 25 0 0 chr13 37823368 37823408 -64049761 + AT_rich Low_complexity Low_complexity 1 40 0 353 212 0 0 chr13 37824027 37824093 -64049076 + MER91 DNA MER1_type 1 66 -74 2027 132 0 0 chr13 37824424 37824712 -64048457 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr13 37824841 37824863 -64048306 + AT_rich Low_complexity Low_complexity 1 22 0 522 309 98 20 chr13 37825184 37825582 -64047587 + L1ME LINE L1 5320 5748 -373 2334 53 0 72 chr13 37830177 37830497 -64042672 - AluSc SINE Alu -12 297 1 2612 32 0 13 chr13 37830740 37831049 -64042120 - AluY SINE Alu -5 306 2 1002 81 0 0 chr13 37831989 37832113 -64041056 - AluY SINE Alu -187 124 1 24 0 0 0 chr13 37832161 37832185 -64040984 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 37832347 37832367 -64040802 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr13 37834297 37834318 -64038851 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 37835243 37835274 -64037895 + AT_rich Low_complexity Low_complexity 1 31 0 3845 186 63 19 chr13 37836546 37837746 -64035423 - L1MB8 LINE L1 -23 6155 4920 303 261 35 63 chr13 37837998 37838129 -64035040 + MER5A DNA MER1_type 37 149 -29 1121 206 188 37 chr13 37838145 37838523 -64034646 + MER63B DNA MER1_type 1 435 -1 2009 119 0 4 chr13 37839090 37839368 -64033801 - AluSg SINE Alu -23 287 11 202 211 0 0 chr13 37840102 37840140 -64033029 - MER5B DNA MER1_type -140 38 1 1043 175 53 19 chr13 37840162 37840425 -64032744 + MER33 DNA MER1_type 53 324 0 609 169 42 0 chr13 37840893 37841011 -64032158 - L1MB3 LINE L1 -1 6182 6060 515 212 10 0 chr13 37842413 37842512 -64030657 - AluJb SINE Alu -19 293 194 1057 168 6 11 chr13 37842512 37842691 -64030478 + AluJo SINE Alu 16 193 -119 698 247 60 22 chr13 37842974 37843156 -64030013 + MER58A DNA MER1_type 1 189 -35 223 247 71 59 chr13 37843211 37843296 -64029873 - L3 LINE CR1 -119 1458 1373 24 0 0 0 chr13 37843410 37843434 -64029735 + AT_rich Low_complexity Low_complexity 1 24 0 451 349 176 14 chr13 37843714 37844378 -64028791 + L2 LINE L2 1387 2158 -1156 1483 206 109 38 chr13 37844678 37845155 -64028014 - Charlie1b DNA MER1_type -11 512 2 195 311 97 80 chr13 37845329 37845628 -64027541 + L2 LINE L2 2398 2701 -613 1929 258 64 47 chr13 37845637 37846544 -64026625 - L1ME3A LINE L1 -8 6162 5203 229 373 44 32 chr13 37846544 37846702 -64026467 + L2 LINE L2 2687 2846 -468 279 272 134 40 chr13 37847009 37847211 -64025958 + L1MC/D LINE L1 5266 5486 -678 292 330 55 32 chr13 37847220 37847532 -64025637 + L1MC/D LINE L1 5538 5856 -1952 344 290 13 113 chr13 37847909 37847980 -64025189 - L1ME LINE L1 -425 5696 5619 1468 69 0 86 chr13 37847980 37848212 -64024957 + L1PA8 LINE L1 5955 6166 -6 344 290 13 113 chr13 37848212 37848378 -64024791 - L1ME LINE L1 -502 5619 5483 2274 98 0 0 chr13 37848943 37849250 -64023919 - AluSc SINE Alu -2 307 1 275 307 145 17 chr13 37851087 37851266 -64021903 - MIR SINE MIR -41 221 20 26 0 0 27 chr13 37851454 37851471 -64021698 + AT_rich Low_complexity Low_complexity 1 17 -19 1328 195 57 30 chr13 37851471 37851769 -64021400 - AluJo SINE Alu -5 307 2 26 0 0 27 chr13 37851769 37851788 -64021381 + AT_rich Low_complexity Low_complexity 17 36 0 24 0 0 0 chr13 37852721 37852745 -64020424 + AT_rich Low_complexity Low_complexity 1 24 0 186 393 56 0 chr13 37853021 37853128 -64020041 + L2 LINE L2 2682 2794 -520 213 274 53 88 chr13 37853359 37853472 -64019697 + L2 LINE L2 3185 3293 -20 700 292 70 59 chr13 37854807 37855249 -64017920 - MLT1J2 LTR MaLR -8 410 1 234 0 0 0 chr13 37856003 37856029 -64017140 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1332 92 34 84 chr13 37856034 37856273 -64016896 - LTR8 LTR ERV1 -104 587 361 2019 104 35 10 chr13 37856283 37856572 -64016597 - AluSg SINE Alu -14 296 1 1572 174 4 0 chr13 37856641 37856900 -64016269 + AluJb SINE Alu 47 306 -6 331 361 57 5 chr13 37857250 37857444 -64015725 + HAL1b LINE L1 361 564 -784 285 255 142 0 chr13 37857525 37857631 -64015538 + L1M4 LINE L1 4981 5101 -1045 1934 114 0 18 chr13 37857835 37858108 -64015061 - AluSx SINE Alu -21 291 24 189 0 0 0 chr13 37858222 37858243 -64014926 + (CA)n Simple_repeat Simple_repeat 2 22 0 1213 207 22 7 chr13 37858345 37858620 -64014549 - L1 LINE L1 -946 5200 4922 315 209 15 0 chr13 37858663 37858730 -64014439 + L1ME4a LINE L1 5982 6049 -72 5020 149 21 26 chr13 37859465 37860482 -64012687 - L1MB2 LINE L1 -2 6169 5163 31 0 0 0 chr13 37860898 37860929 -64012240 + AT_rich Low_complexity Low_complexity 1 31 0 11586 131 26 27 chr13 37861140 37863077 -64010092 + Tigger1 DNA MER2_type 30 1964 -454 273 159 175 0 chr13 37863099 37863162 -64010007 - AluS SINE Alu -6 296 223 1277 206 18 25 chr13 37863163 37863439 -64009730 - AluJb SINE Alu -38 274 1 2543 164 31 9 chr13 37863439 37863733 -64009436 + Tigger1 DNA MER2_type 1952 2261 -157 2257 93 0 13 chr13 37863733 37864034 -64009135 - AluY SINE Alu -14 297 1 2543 164 31 9 chr13 37864034 37864196 -64008973 + Tigger1 DNA MER2_type 2261 2418 0 180 77 0 0 chr13 37864493 37864519 -64008650 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr13 37865349 37865370 -64007799 + AT_rich Low_complexity Low_complexity 1 21 0 559 165 0 0 chr13 37865415 37865500 -64007669 - Tigger7 DNA MER2_type -7 2580 2496 * 1936 179 104 43 chr13 37865494 37865964 -64007205 - Tigger7 DNA MER2_type -1961 526 28 886 134 56 0 chr13 37866529 37866675 -64006494 - MSTB LTR MaLR 0 415 273 2176 144 82 12 chr13 37868006 37868410 -64004759 - Tigger2a DNA MER2_type 0 434 3 263 340 217 5 chr13 37868758 37869061 -64004108 + L2 LINE L2 2719 3080 -233 1351 215 215 34 chr13 37869330 37869767 -64003402 - MLT2B3 LTR ERVL 0 554 25 812 78 93 16 chr13 37869767 37869896 -64003273 + MER85 DNA T2_type 1 139 0 1351 215 215 34 chr13 37869896 37869927 -64003242 - MLT2B3 LTR ERVL -529 25 1 402 265 51 0 chr13 37869933 37870031 -64003138 + MIR SINE MIR 160 262 0 380 261 0 0 chr13 37870063 37870151 -64003018 + L2 LINE L2 3225 3312 -1 1660 162 18 4 chr13 37871457 37871729 -64001440 + AluJo SINE Alu 7 282 -30 1194 163 0 32 chr13 37872253 37872474 -64000695 + MER20 DNA MER1_type 2 215 -4 2133 109 0 0 chr13 37873996 37874306 -63998863 + AluY SINE Alu 1 310 0 217 279 16 0 chr13 37875995 37876056 -63997113 + MIR3 SINE MIR 113 174 -34 616 218 0 49 chr13 37876099 37876241 -63996928 - FLAM_A SINE Alu -7 135 1 237 202 81 10 chr13 37877955 37878054 -63995115 - L1M4 LINE L1 -1445 4701 4596 362 290 84 9 chr13 37878370 37878584 -63994585 - L1MC4a LINE L1 -1904 5887 5658 2626 39 0 3 chr13 37878826 37879138 -63994031 + AluY SINE Alu 1 311 0 233 321 36 27 chr13 37879163 37879275 -63993894 - L1MC4a LINE L1 -2058 4071 3959 378 249 98 70 chr13 37879277 37879646 -63993523 - L1MC4a LINE L1 -3342 2787 2409 296 80 300 0 chr13 37879680 37879730 -63993439 + MER46A DNA MER2_type 1 65 -171 245 226 16 32 chr13 37879682 37879744 -63993425 - MER46A DNA MER2_type -94 142 82 * 954 136 130 6 chr13 37879784 37879953 -63993216 + MER46A DNA MER2_type 47 236 0 240 176 0 0 chr13 37879980 37880031 -63993138 - L1MC4a LINE L1 -3820 2309 2259 441 261 76 0 chr13 37880074 37880231 -63992938 - L1MC4a LINE L1 -4993 1126 958 21 0 0 0 chr13 37880298 37880319 -63992850 + AT_rich Low_complexity Low_complexity 1 21 0 2442 31 0 7 chr13 37880483 37880813 -63992356 - L1PA3 LINE L1 0 6155 5865 4173 13 0 0 chr13 37880813 37881285 -63991884 + L1PA3 LINE L1 5399 5870 -285 370 262 90 8 chr13 37881278 37881400 -63991769 - L1MC4a LINE L1 -5398 721 590 * 2240 229 87 13 chr13 37881461 37882084 -63991085 - L1MD2 LINE L1 0 6359 5691 217 359 0 0 chr13 37883002 37883066 -63990103 - MER5B DNA MER1_type -30 148 85 495 304 52 26 chr13 37883908 37884138 -63989031 - MIR SINE MIR -6 256 21 397 332 130 60 chr13 37884217 37884648 -63988521 - L2 LINE L2 -8 3264 2804 2213 147 18 23 chr13 37936515 37936904 -63936265 + MLT1B LTR MaLR 4 390 0 404 65 52 0 chr13 37937343 37937420 -63935749 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 243 330 48 10 chr13 37937567 37937670 -63935499 + MIR SINE MIR 47 153 -55 1838 207 33 5 chr13 37938273 37938572 -63934597 - MER93a LTR ERV1 0 402 88 2295 108 7 3 chr13 37938572 37938879 -63934290 + AluSq SINE Alu 1 308 -5 1838 207 33 5 chr13 37938879 37938970 -63934199 - MER93a LTR ERV1 -314 88 1 27 62 0 0 chr13 37939402 37939450 -63933719 + AT_rich Low_complexity Low_complexity 1 48 0 985 203 0 0 chr13 37940212 37940375 -63932794 + FRAM SINE Alu 1 163 -3 1903 221 37 69 chr13 37941662 37941797 -63931372 + MER92B LTR ERV1 64 202 -434 1935 199 15 35 chr13 37941797 37942199 -63930970 - MSTD LTR MaLR 0 396 3 1903 221 37 69 chr13 37942199 37942655 -63930514 + MER92B LTR ERV1 202 636 0 426 304 214 23 chr13 37942989 37943246 -63929923 + MLT1J2 LTR MaLR 143 448 -2 1144 251 156 26 chr13 37943285 37943748 -63929421 - LTR67 LTR ERVL -34 523 1 325 258 152 13 chr13 37943862 37944013 -63929156 - MIR SINE MIR -13 249 78 1663 253 52 55 chr13 37944273 37944913 -63928256 - L1MC5 LINE L1 -628 7333 6696 1341 175 133 51 chr13 37944992 37945420 -63927749 - MER31B LTR ERV1 0 466 4 2227 125 0 3 chr13 37945530 37945843 -63927326 + AluSx SINE Alu 1 312 0 2548 155 7 12 chr13 37946208 37946620 -63926549 - MSTA LTR MaLR 0 428 19 2080 123 7 13 chr13 37946667 37946969 -63926200 - AluSq SINE Alu -13 300 1 489 336 16 20 chr13 37947332 37947585 -63925584 - HAL1b LINE L1 -728 620 369 1114 199 100 64 chr13 37949303 37949664 -63923505 + MLT1A2 LTR MaLR 1 374 0 391 200 42 0 chr13 37950746 37950841 -63922328 + L2 LINE L2 1319 1417 -1897 381 58 0 0 chr13 37951619 37951671 -63921498 + (TC)n Simple_repeat Simple_repeat 1 52 0 603 169 308 17 chr13 37952419 37952601 -63920568 - L1MD3 LINE L1 -9 7986 6137 321 286 0 0 chr13 37952604 37952751 -63920418 + (TG)n Simple_repeat Simple_repeat 2 148 0 242 206 0 0 chr13 37953923 37953986 -63919183 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 273 273 0 80 chr13 37954098 37954186 -63918983 - MIR SINE MIR -110 98 18 1795 151 7 7 chr13 37955066 37955344 -63917825 + AluJo SINE Alu 1 278 -34 654 118 62 19 chr13 37955360 37955521 -63917648 + Charlie5 DNA MER1_type 2391 2558 -54 2023 217 58 76 chr13 37955563 37956264 -63916905 + MER20B DNA MER1_type 3 691 -92 411 21 0 0 chr13 37956314 37956362 -63916807 + (TA)n Simple_repeat Simple_repeat 2 49 0 252 304 103 73 chr13 37956462 37956735 -63916434 + L2 LINE L2 2992 3272 0 342 318 121 14 chr13 37956842 37957065 -63916104 + MIR SINE MIR 10 256 -6 1651 196 88 37 chr13 37957068 37957445 -63915724 - MLT2B1 LTR ERVL 0 520 125 904 205 67 5 chr13 37958109 37958304 -63914865 + MER58A DNA MER1_type 13 219 -5 1320 166 51 75 chr13 37958628 37958923 -63914246 - AluJb SINE Alu -24 288 1 1544 177 0 4 chr13 37959396 37959654 -63913515 + AluJo SINE Alu 1 253 -59 400 220 100 10 chr13 37960087 37960187 -63912982 - MER91C DNA MER1_type -31 109 1 285 98 0 0 chr13 37960259 37960300 -63912869 + (TA)n Simple_repeat Simple_repeat 2 42 0 1000 176 11 5 chr13 37960730 37960917 -63912252 - MER5A DNA MER1_type -1 188 1 454 288 36 14 chr13 37960921 37961060 -63912109 + MIR SINE MIR 6 147 -115 282 307 149 18 chr13 37961402 37961516 -63911653 - MIR SINE MIR -48 214 86 2109 95 0 48 chr13 37961819 37962135 -63911034 - AluSx SINE Alu -6 306 6 21 36 0 0 chr13 37962142 37962170 -63910999 + AT_rich Low_complexity Low_complexity 1 28 0 1583 186 6 13 chr13 37962229 37962540 -63910629 - AluJb SINE Alu -3 309 1 1637 173 0 23 chr13 37962569 37962870 -63910299 - AluJo SINE Alu -18 294 1 2344 68 0 0 chr13 37964075 37964371 -63908798 - AluY SINE Alu -15 296 1 17976 123 16 8 chr13 37964742 37967315 -63905854 + Tigger4(Zombi) DNA MER2_type 1 2598 -133 2020 118 0 13 chr13 37967315 37967619 -63905550 - AluSx SINE Alu -12 300 1 17976 123 16 8 chr13 37967619 37967755 -63905414 + Tigger4(Zombi) DNA MER2_type 2598 2731 0 908 285 16 16 chr13 37967755 37967998 -63905171 - MIR SINE MIR -8 254 9 834 190 49 12 chr13 37967998 37968161 -63905008 - MER5A DNA MER1_type 0 189 21 346 221 74 0 chr13 37968177 37968272 -63904897 + MER69 DNA AcHobo 27 128 -2398 1462 146 16 4 chr13 37968293 37968539 -63904630 + AluJo SINE Alu 25 273 -39 352 51 39 26 chr13 37968541 37968619 -63904550 + (TA)n Simple_repeat Simple_repeat 2 80 0 311 226 16 0 chr13 37968637 37968699 -63904470 + MER69 DNA AcHobo 2461 2523 -3 733 162 81 25 chr13 37969398 37969596 -63903573 - Charlie5 DNA MER1_type -51 2561 2353 1028 188 10 10 chr13 37969653 37969845 -63903324 - MER52A LTR ERV1 -1203 552 361 * 1270 142 109 29 chr13 37969813 37970052 -63903117 - MER52A LTR ERV1 -1497 258 1 196 351 75 11 chr13 37970963 37971057 -63902112 + MIR3 SINE MIR 12 111 -97 * 253 281 110 0 chr13 37971045 37971127 -63902042 + MIR SINE MIR 123 213 -49 621 238 46 11 chr13 37971129 37971206 -63901963 + L1ME4a LINE L1 5128 5201 -945 1800 140 19 7 chr13 37971206 37971514 -63901655 + AluSx SINE Alu 1 312 0 621 238 46 11 chr13 37971514 37971697 -63901472 + L1ME4a LINE L1 5201 5397 -749 2734 149 23 13 chr13 37971752 37972223 -63900946 - L1PA16 LINE L1 -8 6158 5683 715 187 58 6 chr13 37972232 37972403 -63900766 - Charlie5 DNA MER1_type -2409 203 24 467 305 47 26 chr13 37972627 37972817 -63900352 + L2 LINE L2 3120 3313 0 291 179 0 0 chr13 37973408 37973475 -63899694 + CT-rich Low_complexity Low_complexity 2 68 0 451 239 128 0 chr13 37974037 37974146 -63899023 + MER45 DNA AcHobo 1 123 -55 563 259 7 34 chr13 37975312 37975459 -63897710 - MER5A DNA MER1_type -3 186 44 794 191 30 50 chr13 37975934 37976133 -63897036 - L1MB3 LINE L1 0 6183 5989 1227 216 34 40 chr13 37976134 37976458 -63896711 - L1MB3 LINE L1 -296 5887 5566 284 269 11 32 chr13 37976624 37976717 -63896452 - MIR3 SINE MIR -14 194 104 512 318 108 10 chr13 37976731 37977027 -63896142 + L2 LINE L2 2988 3312 -1 1799 118 0 0 chr13 37978222 37978476 -63894693 + AluSx SINE Alu 39 292 -20 1299 159 61 81 chr13 37978888 37979217 -63893952 + AluJo SINE Alu 1 323 0 303 294 132 64 chr13 37979217 37979421 -63893748 + L1ME4a LINE L1 5609 5826 -295 230 200 20 0 chr13 37979486 37979536 -63893633 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 392 153 68 51 chr13 37979537 37979655 -63893514 + L1ME4a LINE L1 5961 6080 -41 763 146 23 15 chr13 37979847 37979977 -63893192 - FLAM_C SINE Alu 0 133 3 204 258 79 11 chr13 37979992 37980081 -63893088 - L2 LINE L2 -1612 1702 1608 241 258 98 36 chr13 37980401 37980595 -63892574 + L2 LINE L2 2855 3060 -212 332 312 102 37 chr13 37980843 37981058 -63892111 - MIR SINE MIR -6 256 28 219 288 68 51 chr13 37981742 37981860 -63891309 - L2 LINE L2 -1 3271 3152 574 172 0 0 chr13 37981863 37981962 -63891207 + MER5A DNA MER1_type 15 113 -76 393 225 14 133 chr13 37982088 37982306 -63890863 + L2 LINE L2 3035 3226 -87 2067 110 0 0 chr13 37982422 37982730 -63890439 + AluSx SINE Alu 1 308 0 365 272 88 22 chr13 37984118 37984254 -63888915 - MER20B DNA MER1_type -604 179 35 1534 208 23 32 chr13 37984589 37984935 -63888234 + MER61A LTR ERV1 1 343 0 1780 83 14 54 chr13 37986730 37987007 -63886162 + AluY SINE Alu 40 305 -6 181 374 55 23 chr13 37987020 37987239 -63885930 + L2 LINE L2 2652 2877 -437 197 307 54 108 chr13 37987295 37987461 -63885708 + L2 LINE L2 2966 3122 -150 265 316 46 64 chr13 37987493 37987679 -63885490 - MER5A DNA MER1_type -1 177 4 256 297 79 10 chr13 37987682 37987783 -63885386 + L2 LINE L2 3148 3255 -17 699 155 10 10 chr13 37987783 37987977 -63885192 + GA-rich Low_complexity Low_complexity 1 194 0 211 293 13 40 chr13 37989792 37989867 -63883302 + L2 LINE L2 3193 3265 -7 1982 171 28 6 chr13 37991420 37991777 -63881392 + MLT1A1 LTR MaLR 1 365 0 207 159 0 43 chr13 37992277 37992346 -63880823 + CT-rich Low_complexity Low_complexity 3 68 0 449 288 89 0 chr13 37992412 37992558 -63880611 - MIR SINE MIR -1 261 103 509 236 45 0 chr13 37992724 37992834 -63880335 + MIR SINE MIR 72 186 -76 330 268 122 61 chr13 37993138 37993302 -63879867 - MIR SINE MIR -44 218 45 195 42 0 0 chr13 37993681 37993705 -63879464 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2358 39 0 0 chr13 37994034 37994315 -63878854 + AluY SINE Alu 21 301 -10 216 227 91 30 chr13 37994590 37994656 -63878513 - L2 LINE L2 0 3272 3203 189 233 256 0 chr13 37995479 37995565 -63877604 + L2 LINE L2 3161 3268 -4 327 310 169 0 chr13 37995931 37996115 -63877054 - Charlie8 DNA MER1_type -2142 275 61 1714 143 14 7 chr13 37996136 37996448 -63876721 + AluJb SINE Alu 1 314 0 420 246 69 91 chr13 37996784 37996959 -63876210 + MIR SINE MIR 21 191 -71 2280 192 53 13 chr13 37997843 37998083 -63875086 - L1MB5 LINE L1 -13 6161 5932 2584 133 35 41 chr13 37998083 37998464 -63874705 + MSTB2 LTR MaLR 1 380 -77 1765 125 54 4 chr13 37998464 37998743 -63874426 - AluSx SINE Alu 0 312 20 2584 133 35 41 chr13 37998743 37998821 -63874348 + MSTB2 LTR MaLR 380 457 0 2280 192 53 13 chr13 37998821 37998929 -63874240 - L1MB5 LINE L1 -242 5932 5830 228 35 0 0 chr13 37998929 37998958 -63874211 + (TG)n Simple_repeat Simple_repeat 1 29 0 2280 192 53 13 chr13 37998958 37999062 -63874107 - L1MB5 LINE L1 -344 5830 5690 226 245 0 0 chr13 37999985 38000038 -63873131 - L2 LINE L2 0 3313 3261 22 0 0 0 chr13 38000222 38000244 -63872925 + AT_rich Low_complexity Low_complexity 1 22 0 616 231 0 27 chr13 38000545 38000692 -63872477 + LTR16C LTR ERVL 340 482 -9 1858 212 21 24 chr13 38000693 38001118 -63872051 + MLT1C LTR MaLR 1 424 -43 418 289 96 12 chr13 38002560 38002726 -63870443 + MIR SINE MIR 77 256 -6 548 125 11 0 chr13 38003027 38003115 -63870054 + L1MB3 LINE L1 6088 6176 -7 5936 182 24 11 chr13 38003651 38004872 -63868297 - L1 LINE L1 -2606 3540 2304 280 292 56 56 chr13 38005378 38005539 -63867630 - MIR SINE MIR -52 210 50 558 217 31 0 chr13 38006023 38006152 -63867017 + MIR SINE MIR 60 192 -70 350 263 73 22 chr13 38006366 38006503 -63866666 + MER46C DNA MER2_type 80 223 -115 * 1239 158 111 88 chr13 38006481 38006598 -63866571 + MLT2C1 LTR ERVL 30 143 -377 1590 140 163 35 chr13 38006598 38006862 -63866307 - MLT1B LTR MaLR 0 390 71 2140 110 7 0 chr13 38006862 38007161 -63866008 + AluSg SINE Alu 2 302 -8 1590 140 163 35 chr13 38007161 38007239 -63865930 - MLT1B LTR MaLR -319 71 4 1239 158 111 88 chr13 38007239 38007398 -63865771 + MLT2C1 LTR ERVL 143 297 -223 2170 103 10 0 chr13 38007398 38007699 -63865470 - AluSg SINE Alu -6 304 1 1239 158 111 88 chr13 38007699 38007753 -63865416 + MLT2C1 LTR ERVL 297 485 -35 239 250 28 90 chr13 38007895 38008039 -63865130 - MIR SINE MIR -65 197 63 1848 179 108 56 chr13 38008696 38009217 -63863952 + LTR10A LTR ERV1 1 548 -61 1106 187 9 0 chr13 38009397 38009616 -63863553 + L1 LINE L1 2651 2871 -3275 696 250 28 14 chr13 38009726 38009938 -63863231 + L1ME3A LINE L1 5692 5906 -264 2104 132 3 13 chr13 38010226 38010537 -63862632 + AluSx SINE Alu 1 308 -4 572 233 39 73 chr13 38010561 38010767 -63862402 + MER112 DNA MER1_type 62 260 0 1570 190 14 17 chr13 38011407 38011702 -63861467 - AluJo SINE Alu -18 294 1 351 113 0 0 chr13 38012899 38012952 -63860217 + (TG)n Simple_repeat Simple_repeat 2 54 0 3988 52 19 0 chr13 38013474 38013955 -63859214 + LTR2B LTR ERV1 1 490 0 362 206 15 29 chr13 38014944 38015080 -63858089 + GA-rich Low_complexity Low_complexity 4 137 0 229 278 0 0 chr13 38016381 38016435 -63856734 + (CA)n Simple_repeat Simple_repeat 2 55 0 2177 83 0 0 chr13 38016877 38017142 -63856027 + AluSg SINE Alu 35 299 -11 234 260 130 8 chr13 38017155 38017278 -63855891 - L1ME4a LINE L1 -3 6118 5981 2583 144 8 8 chr13 38017380 38017782 -63855387 - MER57A LTR ERV1 0 403 2 902 295 29 9 chr13 38017863 38018178 -63854991 - L1ME4a LINE L1 -298 5823 5503 2166 139 34 65 chr13 38019016 38019434 -63853735 + MLT2D LTR ERVL 3 407 -7 321 328 96 0 chr13 38019935 38020112 -63853057 + L1ME LINE L1 5556 5749 -372 266 73 24 0 chr13 38020461 38020502 -63852667 + (GGA)n Simple_repeat Simple_repeat 1 42 0 29 70 0 0 chr13 38021390 38021447 -63851722 + AT_rich Low_complexity Low_complexity 1 57 0 2759 201 50 76 chr13 38021661 38022477 -63850692 - L1MC5 LINE L1 -494 7467 6672 1750 128 6 62 chr13 38022477 38022797 -63850372 - AluJb SINE Alu -8 304 3 2759 201 50 76 chr13 38022797 38022834 -63850335 - L1MC5 LINE L1 -1289 6672 6636 301 159 14 14 chr13 38022851 38022920 -63850249 + CT-rich Low_complexity Low_complexity 6 74 0 1754 293 25 6 chr13 38023100 38023618 -63849551 - MLT1F1 LTR MaLR -26 541 14 520 227 45 148 chr13 38023622 38023952 -63849217 - MLT1F1-int LTR MaLR -2 1369 1074 289 111 22 0 chr13 38023960 38024005 -63849164 + AluSg/x SINE Alu 184 229 -71 2399 77 31 6 chr13 38024371 38024696 -63848473 - L1PA8 LINE L1 -5 6167 5835 304 281 141 0 chr13 38024785 38024913 -63848256 - MLT1F1-int LTR MaLR -1221 150 5 1841 222 93 38 chr13 38024916 38025412 -63847757 - MLT1F1 LTR MaLR 0 567 45 618 284 126 13 chr13 38025653 38026107 -63847062 - L1MC4a LINE L1 -1640 6168 5664 572 216 34 110 chr13 38026099 38026349 -63846820 - L1ME4a LINE L1 -280 5841 5620 * 2081 137 7 0 chr13 38026349 38026642 -63846527 + AluSx SINE Alu 1 295 -17 572 216 34 110 chr13 38026642 38026719 -63846450 - L1ME4a LINE L1 -501 5620 5539 474 253 52 105 chr13 38026753 38026982 -63846187 + MIR SINE MIR 46 262 0 211 189 45 36 chr13 38027120 38027231 -63845938 + (TTATA)n Simple_repeat Simple_repeat 3 114 0 362 167 0 14 chr13 38027345 38027417 -63845752 - L1MA10 LINE L1 -2 6332 6262 283 202 125 87 chr13 38027418 38027522 -63845647 - L1M3c LINE L1 -6033 108 1 2050 246 63 35 chr13 38027855 38027943 -63845226 - L1ME3A LINE L1 -11 6159 6075 2377 186 31 7 chr13 38027943 38028399 -63844770 - MLT1C LTR MaLR 0 467 1 2050 246 63 35 chr13 38028399 38028964 -63844205 - L1ME3A LINE L1 -95 6075 5488 180 0 0 0 chr13 38028996 38029016 -63844153 + (ATG)n Simple_repeat Simple_repeat 2 21 0 318 316 85 11 chr13 38029046 38029223 -63843946 - MIR SINE MIR -36 226 37 214 250 15 15 chr13 38029769 38029837 -63843332 - MIR SINE MIR -111 151 84 2881 213 18 3 chr13 38029860 38030486 -63842683 + L1MC1 LINE L1 3798 4432 -1714 318 180 34 67 chr13 38030487 38030576 -63842593 + L1MC1 LINE L1 4901 4986 -1160 3309 163 20 18 chr13 38030576 38031179 -63841990 + L1MC1 LINE L1 5727 6330 -3 195 206 16 79 chr13 38031339 38031402 -63841767 - L2 LINE L2 -78 3235 3177 405 0 0 0 chr13 38034116 38034161 -63839008 + (TG)n Simple_repeat Simple_repeat 1 45 0 191 369 18 0 chr13 38035427 38035538 -63837631 + MIR SINE MIR 33 145 -63 288 111 0 0 chr13 38037420 38037465 -63835704 + (CA)n Simple_repeat Simple_repeat 2 46 0 2462 88 0 0 chr13 38038691 38038999 -63834170 + AluSq SINE Alu 1 308 -5 12172 131 50 9 chr13 38039283 38041218 -63831951 - Ricksha_c DNA DNA -25 2021 8 243 0 0 0 chr13 38042019 38042046 -63831123 + (CA)n Simple_repeat Simple_repeat 2 28 0 224 280 224 84 chr13 38042296 38042433 -63830736 + MIR SINE MIR 18 134 -128 1817 147 7 20 chr13 38042433 38042725 -63830444 + AluJo SINE Alu 1 288 -24 224 280 224 84 chr13 38042725 38042801 -63830368 + MIR SINE MIR 134 261 -1 207 293 0 24 chr13 38043028 38043110 -63830059 - MIR SINE MIR -82 126 47 291 269 177 14 chr13 38044076 38044217 -63828952 - MIR SINE MIR -36 226 63 423 196 93 0 chr13 38044497 38044594 -63828575 + LTR16C LTR ERVL 385 490 -1 622 224 101 22 chr13 38044613 38044792 -63828377 - MIR SINE MIR -5 257 65 2039 131 3 0 chr13 38044815 38045105 -63828064 - AluSx SINE Alu -21 291 1 2383 92 0 0 chr13 38045225 38045530 -63827639 - AluY SINE Alu -6 305 1 200 233 0 0 chr13 38045827 38045870 -63827299 + A-rich Low_complexity Low_complexity 1 43 0 263 320 107 0 chr13 38046840 38046943 -63826226 + MIR SINE MIR 37 150 -58 366 329 99 9 chr13 38047215 38047428 -63825741 + MIR SINE MIR 25 256 -6 685 160 0 53 chr13 38047446 38047634 -63825535 + CT-rich Low_complexity Low_complexity 3 180 0 2269 86 40 20 chr13 38048289 38048639 -63824530 - L1PA11 LINE L1 -1 6173 5817 1529 117 0 0 chr13 38048645 38048851 -63824318 - L1PA12 LINE L1 -298 5870 5665 225 253 13 40 chr13 38049036 38049111 -63824058 + L2 LINE L2 3200 3272 0 802 234 82 20 chr13 38049386 38049630 -63823539 + MIR SINE MIR 4 262 0 762 183 62 52 chr13 38050112 38050316 -63822853 - MIR SINE MIR -11 251 41 180 176 0 0 chr13 38051045 38051079 -63822090 + T-rich Low_complexity Low_complexity 1 34 0 305 254 43 87 chr13 38051276 38051461 -63821708 + MIR SINE MIR 35 211 -51 315 71 0 0 chr13 38051572 38051614 -63821555 + (TG)n Simple_repeat Simple_repeat 2 43 0 3225 184 52 6 chr13 38052215 38052904 -63820265 + L1MB4 LINE L1 5460 6180 0 186 221 232 11 chr13 38053212 38053307 -63819862 + L2 LINE L2 3180 3295 -18 529 282 25 49 chr13 38053350 38053595 -63819574 + L2 LINE L2 3075 3313 0 2129 117 0 0 chr13 38053840 38054184 -63818985 - AluSx SINE Alu 0 344 1 1273 284 93 21 chr13 38054545 38055146 -63818023 + MER115 DNA AcHobo 5 693 0 732 169 19 106 chr13 38055352 38055468 -63817701 + L1ME3 LINE L1 5945 6037 -125 1945 137 0 20 chr13 38055468 38055760 -63817409 - AluJo SINE Alu -26 286 1 732 169 19 106 chr13 38055760 38055850 -63817319 + L1ME3 LINE L1 6037 6133 -29 294 311 8 8 chr13 38055881 38056003 -63817166 + MIR SINE MIR 67 188 -74 192 250 19 0 chr13 38056657 38056709 -63816460 - L2 LINE L2 0 3272 3220 483 256 58 7 chr13 38056903 38057040 -63816129 - MIR SINE MIR -54 208 65 655 161 188 7 chr13 38057043 38057192 -63815977 - MER45A DNA AcHobo -2 176 1 530 287 92 35 chr13 38057586 38057942 -63815227 - MLT1J LTR MaLR -2 509 209 182 256 0 0 chr13 38058344 38058383 -63814786 + L2 LINE L2 3137 3175 -97 1143 112 0 0 chr13 38058563 38058800 -63814369 + (TCCA)n Simple_repeat Simple_repeat 1 237 0 459 325 34 32 chr13 38058802 38059114 -63814055 - L2 LINE L2 -15 3298 2952 595 51 0 0 chr13 38060221 38060299 -63812870 - Alu SINE Alu -4 305 228 480 238 8 66 chr13 38060498 38060620 -63812549 - MER5B DNA MER1_type 0 178 64 204 299 58 36 chr13 38060891 38061028 -63812141 + MIR SINE MIR 49 188 -74 234 241 51 51 chr13 38061054 38061133 -63812036 + L1PB1 LINE L1 6009 6087 -64 739 130 9 0 chr13 38061073 38061188 -63811981 + L1PA16 LINE L1 6033 6148 -18 305 182 0 0 chr13 38061219 38061274 -63811895 - MIR SINE MIR -125 137 83 644 246 29 23 chr13 38061774 38061945 -63811224 + MER5B DNA MER1_type 1 172 -6 281 323 115 0 chr13 38061994 38062124 -63811045 + L3b LINE CR1 1251 1395 -188 360 188 135 23 chr13 38062434 38062567 -63810602 - L1ME4a LINE L1 -3 6118 5971 306 0 0 0 chr13 38062568 38062602 -63810567 + (TA)n Simple_repeat Simple_repeat 2 35 0 250 197 66 0 chr13 38063550 38063611 -63809558 - L2 LINE L2 -11 3302 3238 1561 175 153 41 chr13 38063694 38064112 -63809057 - MLT1C LTR MaLR 0 467 3 1396 255 79 18 chr13 38064541 38064914 -63808255 - MER115 DNA AcHobo -51 642 235 1250 176 58 105 chr13 38064914 38065295 -63807874 + MLT1A1 LTR MaLR 1 363 -2 1396 255 79 18 chr13 38065295 38065376 -63807793 - MER115 DNA AcHobo -458 235 160 226 290 101 57 chr13 38065801 38066049 -63807120 - MLT1J LTR MaLR 0 511 253 261 242 99 22 chr13 38066101 38066192 -63806977 + L2 LINE L2 3166 3263 -50 1988 199 68 19 chr13 38066241 38066713 -63806456 + MLT1D LTR MaLR 3 497 -8 1232 257 43 3 chr13 38066792 38067095 -63806074 - LTR16C LTR ERVL 0 491 177 306 236 97 0 chr13 38067282 38067354 -63805815 + MIR SINE MIR 126 204 -58 1047 184 27 68 chr13 38067374 38067665 -63805504 - MLT1D LTR MaLR -155 350 72 1806 163 81 0 chr13 38067665 38067985 -63805184 - MER7A DNA MER2_type -1 345 2 454 267 25 0 chr13 38068003 38068123 -63805046 - MIR SINE MIR -24 238 116 467 279 64 6 chr13 38068978 38069150 -63804019 + MIR SINE MIR 14 195 -67 183 156 0 0 chr13 38069557 38069589 -63803580 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2352 140 22 16 chr13 38069592 38069963 -63803206 - MLT2D LTR ERVL -40 374 2 520 77 0 121 chr13 38070049 38070100 -63803069 - MADE1 DNA Mariner 0 80 43 2028 114 10 0 chr13 38070100 38070390 -63802779 + AluSx SINE Alu 1 293 -19 520 77 0 121 chr13 38070390 38070429 -63802740 - MADE1 DNA Mariner -37 43 1 294 285 68 104 chr13 38070562 38070811 -63802358 + L2 LINE L2 2934 3173 -99 2471 56 0 3 chr13 38070861 38071166 -63802003 - AluY SINE Alu -7 304 1 1669 205 16 32 chr13 38071166 38071476 -63801693 + MLT1A2 LTR MaLR 4 308 -66 500 100 0 12 chr13 38071476 38071556 -63801613 + MADE1 DNA Mariner 1 79 -1 1669 205 16 32 chr13 38071556 38071620 -63801549 + MLT1A2 LTR MaLR 308 372 -2 219 125 0 0 chr13 38072421 38072461 -63800708 + (TG)n Simple_repeat Simple_repeat 2 41 0 340 279 29 69 chr13 38072694 38072918 -63800251 + MIR SINE MIR 19 240 -22 1083 149 0 0 chr13 38073482 38073650 -63799519 + AluJb SINE Alu 123 290 -22 551 273 164 9 chr13 38073906 38074126 -63799043 - MIR SINE MIR -7 255 2 340 236 128 24 chr13 38075267 38075517 -63797652 - L1ME4a LINE L1 -3 6118 5843 3431 169 38 92 chr13 38076396 38077317 -63795852 + MER63C DNA MER1_type 36 906 -24 589 302 109 30 chr13 38077639 38078043 -63795126 - L1ME4a LINE L1 -1316 4830 4395 366 274 50 13 chr13 38078142 38078301 -63794868 - L1M4 LINE L1 -1950 4196 4032 6497 161 30 5 chr13 38078388 38080112 -63793057 - L1PA16 LINE L1 -1 6165 4378 423 0 0 0 chr13 38080112 38080159 -63793010 + (TG)n Simple_repeat Simple_repeat 2 48 0 6497 161 30 5 chr13 38080159 38080575 -63792594 - L1PA16 LINE L1 -1788 4378 3974 1712 174 20 0 chr13 38080568 38080867 -63792302 - L1MB7 LINE L1 -52 6132 5828 * 24 53 0 0 chr13 38080922 38080960 -63792209 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 38081032 38081060 -63792109 + AT_rich Low_complexity Low_complexity 1 28 0 254 283 59 138 chr13 38081508 38081812 -63791357 + L2 LINE L2 2943 3222 -50 183 80 0 0 chr13 38081835 38081860 -63791309 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 2197 89 10 0 chr13 38082041 38082333 -63790836 - AluSq SINE Alu -18 295 1 2190 103 3 6 chr13 38082789 38083100 -63790069 - AluSx SINE Alu -2 310 1 396 293 31 16 chr13 38084895 38085086 -63788083 + L1ME4a LINE L1 5926 6119 -2 373 338 25 20 chr13 38085437 38085635 -63787534 + MIR SINE MIR 21 219 -43 219 341 82 22 chr13 38085738 38085873 -63787296 - MIR SINE MIR -59 203 61 1181 233 8 4 chr13 38086288 38086550 -63786619 - MER93a LTR ERV1 -1 401 139 352 298 57 16 chr13 38086663 38086787 -63786382 + L2 LINE L2 3183 3311 -2 496 245 157 25 chr13 38087384 38087543 -63785626 + MER5A DNA MER1_type 10 189 0 1527 226 63 53 chr13 38088879 38089389 -63783780 - L1ME3 LINE L1 -2 6160 5646 712 125 0 27 chr13 38089396 38089508 -63783661 - LTR40a LTR ERVL -7 512 404 1628 199 122 99 chr13 38089519 38090168 -63783001 + LTR49-int LTR ERV1 460 1123 -5208 2683 97 8 3 chr13 38090312 38090674 -63782495 - THE1B LTR MaLR 0 364 1 1096 98 0 0 chr13 38090883 38091026 -63782143 + AluSg/x SINE Alu 154 296 -16 1107 210 126 43 chr13 38091026 38091374 -63781795 - MLT1D LTR MaLR -128 377 1 205 250 213 0 chr13 38091374 38091454 -63781715 - L2 LINE L2 -678 2636 2540 343 304 51 43 chr13 38091487 38091625 -63781544 - L2 LINE L2 0 3272 3134 547 275 27 0 chr13 38092316 38092465 -63780704 - MER115 DNA AcHobo 0 693 541 1979 141 0 0 chr13 38092465 38092762 -63780407 + AluSq SINE Alu 1 297 -16 772 320 114 20 chr13 38092792 38093142 -63780027 - MER115 DNA AcHobo -236 457 75 207 0 0 0 chr13 38093726 38093749 -63779420 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 331 87 0 0 chr13 38093759 38093805 -63779364 - MADE1 DNA Mariner -34 46 1 272 264 82 27 chr13 38093806 38093916 -63779253 - L2 LINE L2 -19 3294 3179 1664 151 65 0 chr13 38093932 38094223 -63778946 - AluJb SINE Alu -2 310 1 181 270 191 0 chr13 38094485 38094548 -63778621 - L2 LINE L2 -40 3232 3158 1949 144 0 0 chr13 38095416 38095700 -63777469 + AluSx SINE Alu 1 284 -28 635 25 12 0 chr13 38095703 38095784 -63777385 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 323 304 182 46 chr13 38097396 38097806 -63775363 + L2 LINE L2 2791 3271 -1 457 222 111 15 chr13 38097982 38098117 -63775052 + LTR33 LTR ERVL 70 217 -304 196 243 230 14 chr13 38098498 38098572 -63774597 - MIR SINE MIR -53 209 120 487 233 53 27 chr13 38098641 38098791 -63774378 + MIR SINE MIR 32 185 -77 25 31 0 0 chr13 38099100 38099132 -63774037 + AT_rich Low_complexity Low_complexity 1 32 0 307 292 11 11 chr13 38099511 38099600 -63773569 + (TG)n Simple_repeat Simple_repeat 2 90 0 213 321 92 9 chr13 38100000 38100109 -63773060 + MIR SINE MIR 36 153 -109 272 233 137 0 chr13 38100187 38100260 -63772909 + L2 LINE L2 3174 3256 -16 225 65 0 0 chr13 38100693 38100724 -63772445 + (A)n Simple_repeat Simple_repeat 1 31 0 270 0 0 0 chr13 38100907 38100937 -63772232 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 378 139 0 0 chr13 38101136 38101208 -63771961 + (CCA)n Simple_repeat Simple_repeat 1 72 0 242 224 0 0 chr13 38101819 38101877 -63771292 + T-rich Low_complexity Low_complexity 1 58 0 304 297 135 42 chr13 38102941 38103133 -63770036 - L3b LINE CR1 -254 1329 1120 276 332 58 8 chr13 38104257 38104398 -63768771 - MIR SINE MIR -62 146 18 1669 161 13 17 chr13 38104555 38104853 -63768316 + AluJo SINE Alu 1 297 -15 714 293 27 18 chr13 38105358 38105583 -63767586 - MIR SINE MIR -4 258 32 2035 187 64 10 chr13 38105739 38106145 -63767024 - MER63B DNA MER1_type -1 435 8 1401 148 7 1 chr13 38106145 38106450 -63766719 + MER2 DNA MER2_type 2 344 -1 396 298 121 0 chr13 38108772 38108913 -63764256 - MER5A DNA MER1_type -3 186 29 1535 121 124 8 chr13 38110159 38110439 -63762730 + AluSg SINE Alu 4 312 0 861 179 0 27 chr13 38110545 38110729 -63762440 - MER53 DNA DNA -9 180 2 216 254 153 34 chr13 38111091 38111209 -63761960 - L2 LINE L2 -11 3302 3171 650 249 63 116 chr13 38111364 38111762 -63761407 - LTR40a LTR ERVL -142 377 1 1321 196 5 0 chr13 38111948 38112168 -63761001 - MER58A DNA MER1_type 0 224 4 1790 241 56 26 chr13 38112751 38113253 -63759916 - MER74B LTR ERVL -50 572 56 300 229 33 0 chr13 38113492 38113553 -63759616 - MER91B DNA MER1_type -126 64 2 331 197 16 0 chr13 38113591 38113652 -63759517 - LTR67 LTR ERVL -2 555 494 3166 156 139 38 chr13 38113671 38114375 -63758794 + LTR48 LTR ERV1 3 777 -10 198 0 0 0 chr13 38115563 38115585 -63757584 + (T)n Simple_repeat Simple_repeat 1 22 0 201 39 0 0 chr13 38116988 38117014 -63756155 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1625 182 27 90 chr13 38117223 38117445 -63755724 - MER31B LTR ERV1 -13 648 414 1661 179 7 13 chr13 38117445 38117747 -63755422 + AluJb SINE Alu 1 300 -12 1625 182 27 90 chr13 38117747 38118001 -63755168 - MER31B LTR ERV1 -247 414 7 497 251 33 20 chr13 38118484 38118757 -63754412 + MER20B DNA MER1_type 396 709 -74 1440 96 41 5 chr13 38119094 38119314 -63753855 + MER34B LTR ERV1 1 204 -361 2990 184 105 5 chr13 38119367 38120066 -63753103 - MER21B LTR ERV1 -61 802 1 1983 163 34 0 chr13 38120066 38120421 -63752748 + MER34B LTR ERV1 199 565 0 232 287 123 0 chr13 38120442 38120564 -63752605 + L2 LINE L2 2925 3061 -211 190 280 80 40 chr13 38120700 38120775 -63752394 + L2 LINE L2 3187 3264 -8 2603 108 23 83 chr13 38120806 38121278 -63751891 + MER65A LTR ERV1 2 445 0 256 0 24 49 chr13 38122188 38122229 -63750940 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 323 224 15 119 chr13 38122901 38123035 -63750134 - MER21B LTR ERV1 -415 448 329 244 239 43 54 chr13 38123067 38123159 -63750010 + L2 LINE L2 3182 3272 0 371 271 10 85 chr13 38123180 38123379 -63749790 - L2 LINE L2 -17 3296 3113 403 278 9 28 chr13 38123433 38123541 -63749628 - MLT1L LTR MaLR -508 107 2 467 193 155 68 chr13 38124345 38124393 -63748776 - MER5A DNA MER1_type 0 189 147 1580 172 6 63 chr13 38124393 38124724 -63748445 - AluJo SINE Alu 0 312 1 467 193 155 68 chr13 38124724 38124836 -63748333 - MER5A DNA MER1_type -42 147 15 206 247 94 24 chr13 38124819 38124904 -63748265 + MIR3 SINE MIR 115 205 -3 * 323 285 58 22 chr13 38124920 38125057 -63748112 - MLT1J LTR MaLR -369 142 1 282 237 193 0 chr13 38125059 38125173 -63747996 - MIR SINE MIR -10 252 117 1566 180 26 7 chr13 38125177 38125449 -63747720 + AluJb SINE Alu 1 277 -35 3092 75 58 0 chr13 38125452 38125868 -63747301 + MLT2A1 LTR ERVL 5 444 0 43619 64 7 3 chr13 38125868 38131193 -63741976 + HERVL-A1-A1 LTR ERVL 1 5348 -306 2654 63 11 0 chr13 38131348 38131696 -63741473 + HERVL-A1-A1 LTR ERVL 5303 5654 0 3495 70 5 0 chr13 38131696 38132136 -63741033 + MLT2A1 LTR ERVL 1 442 -2 215 130 0 43 chr13 38132149 38132195 -63740974 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 2201 122 18 42 chr13 38132200 38132584 -63740585 + THE1C LTR MaLR 1 375 0 625 175 16 104 chr13 38133265 38133379 -63739790 - MER96B DNA MER1_type? -1 416 322 1394 209 84 23 chr13 38133379 38133723 -63739446 + MLT1A1 LTR MaLR 1 365 0 625 175 16 104 chr13 38133723 38133791 -63739378 - MER96B DNA MER1_type? -95 322 250 1830 215 74 37 chr13 38134059 38134541 -63738628 + MER39 LTR ERV1 6 652 -55 3021 160 65 24 chr13 38134541 38135160 -63738009 + LTR48B LTR ERV1 1 644 0 1830 215 74 37 chr13 38135160 38135219 -63737950 + MER39 LTR ERV1 652 707 0 700 294 57 11 chr13 38135264 38135529 -63737640 + L1ME4a LINE L1 5611 5887 -234 2194 117 0 28 chr13 38137551 38137868 -63735301 + AluSx SINE Alu 5 312 0 303 293 179 7 chr13 38138290 38138430 -63734739 - MER5A DNA MER1_type -6 183 20 763 262 28 14 chr13 38138454 38138668 -63734501 - MIR SINE MIR -26 236 20 272 296 173 12 chr13 38139089 38139251 -63733918 - MIR SINE MIR -54 208 21 1563 245 102 47 chr13 38139264 38139823 -63733346 - MLT1G LTR MaLR 0 590 1 249 119 0 0 chr13 38140681 38140723 -63732446 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 1490 301 69 38 chr13 38140742 38140930 -63732239 - L2 LINE L2 -55 3258 3077 2583 49 0 0 chr13 38140930 38141237 -63731932 - AluY SINE Alu -4 307 1 1490 301 69 38 chr13 38141237 38141990 -63731179 - L2 LINE L2 -236 3077 2292 2301 101 3 0 chr13 38142614 38142910 -63730259 + AluSx SINE Alu 1 297 -15 235 279 14 16 chr13 38143902 38143981 -63729188 - MIR SINE MIR -101 107 29 2320 104 0 7 chr13 38144602 38144909 -63728260 - AluSx SINE Alu -2 310 6 605 178 37 0 chr13 38145291 38145398 -63727771 + MLT1I LTR MaLR 296 406 -3 913 256 48 24 chr13 38145729 38145979 -63727190 + MIR SINE MIR 7 262 0 2984 163 19 30 chr13 38147243 38147807 -63725362 + MER74A LTR ERVL 1 558 0 2234 8 0 0 chr13 38148130 38148367 -63724802 + AluYb8 SINE Alu 74 310 -8 922 287 36 58 chr13 38148863 38149044 -63724125 + MLT1I LTR MaLR 8 191 -218 718 153 112 182 chr13 38149044 38149224 -63723945 + MER33 DNA MER1_type 2 148 -2437 2500 67 0 3 chr13 38149224 38149523 -63723646 - AluY SINE Alu -13 298 1 718 153 112 182 chr13 38149523 38149689 -63723480 + MER33 DNA MER1_type 148 324 0 922 287 36 58 chr13 38149689 38149918 -63723251 + MLT1I LTR MaLR 191 409 0 626 267 54 33 chr13 38150630 38150870 -63722299 - MLT1J LTR MaLR -50 461 217 270 220 0 0 chr13 38152629 38152679 -63720490 + AluSg/x SINE Alu 138 187 -115 2235 107 13 0 chr13 38152681 38152979 -63720190 + AluSx SINE Alu 1 302 -10 1452 167 62 23 chr13 38152992 38153250 -63719919 + 7SLRNA srpRNA srpRNA 43 310 -10 582 251 14 65 chr13 38153396 38153611 -63719558 - MIR SINE MIR -50 212 9 189 0 0 0 chr13 38153790 38153811 -63719358 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 719 293 128 18 chr13 38154615 38154950 -63718219 + MLT1D LTR MaLR 1 372 -133 785 236 0 6 chr13 38155092 38155257 -63717912 + FRAM SINE Alu 1 164 -2 218 29 59 0 chr13 38155842 38155876 -63717293 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2190 104 0 0 chr13 38155883 38156163 -63717006 - AluSx SINE Alu -32 280 1 2401 88 3 0 chr13 38156638 38156935 -63716234 - AluSq SINE Alu -15 298 1 216 0 0 0 chr13 38157011 38157035 -63716134 + (T)n Simple_repeat Simple_repeat 1 24 0 336 264 138 0 chr13 38157135 38157302 -63715867 + L2 LINE L2 2829 3018 -254 3901 173 58 4 chr13 38157321 38158040 -63715129 + L1MCa LINE L1 20 777 -5649 1678 192 83 3 chr13 38158067 38158405 -63714764 + MLT1A1 LTR MaLR 1 365 0 570 249 163 20 chr13 38158432 38158677 -63714492 + L2 LINE L2 3034 3313 0 274 216 39 13 chr13 38158842 38158995 -63714174 + (TA)n Simple_repeat Simple_repeat 1 157 0 1360 158 85 95 chr13 38159413 38159776 -63713393 + MLT2B1 LTR ERVL 1 411 -104 312 27 0 0 chr13 38160189 38160226 -63712943 + (TG)n Simple_repeat Simple_repeat 1 37 0 267 146 0 0 chr13 38160740 38160781 -63712388 - L2 LINE L2 -19 3253 3213 213 368 110 0 chr13 38160931 38161067 -63712102 - L2 LINE L2 -185 3087 2937 208 327 0 37 chr13 38161346 38161453 -63711716 - L2 LINE L2 -547 2767 2665 328 236 195 54 chr13 38162373 38162703 -63710466 + L1MC5 LINE L1 7507 7866 -95 2274 91 0 7 chr13 38162707 38163015 -63710154 - AluY SINE Alu 0 306 1 539 128 0 0 chr13 38163032 38163110 -63710059 - MADE1 DNA Mariner 0 80 3 306 292 21 0 chr13 38163321 38163417 -63709752 - MIR SINE MIR 0 262 165 713 273 65 26 chr13 38163598 38163698 -63709471 - MIR SINE MIR 0 262 167 1816 236 84 12 chr13 38163698 38164210 -63708959 + MLT1H LTR MaLR 1 549 0 713 273 65 26 chr13 38164210 38164340 -63708829 - MIR SINE MIR -95 167 23 1524 163 115 9 chr13 38164481 38164819 -63708350 - MLT1A2 LTR MaLR 0 374 1 314 392 75 7 chr13 38165050 38165328 -63707841 - L2 LINE L2 -522 2792 2496 4599 151 34 52 chr13 38166314 38167234 -63705935 - MER4D LTR ERV1 0 903 1 1939 130 35 7 chr13 38168248 38168533 -63704636 - AluJb SINE Alu -19 293 1 750 250 11 0 chr13 38169023 38169199 -63703970 + MER5B DNA MER1_type 1 178 0 326 250 53 53 chr13 38169487 38169639 -63703530 + MER103 DNA DNA 3 154 -12 1009 178 31 11 chr13 38169708 38169899 -63703270 + MER20 DNA MER1_type 25 219 0 296 301 7 34 chr13 38169956 38170102 -63703067 + GA-rich Low_complexity Low_complexity 1 142 0 3328 129 30 60 chr13 38170106 38170742 -63702427 + L1MC1 LINE L1 5712 6328 -5 243 0 0 0 chr13 38170749 38170776 -63702393 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2388 209 109 20 chr13 38172330 38172918 -63700251 + MER82 DNA MER2_type 7 646 -7 382 347 59 23 chr13 38172925 38173144 -63700025 + MIR SINE MIR 5 231 -31 182 262 79 56 chr13 38173618 38173744 -63699425 + MER5B DNA MER1_type 22 150 -28 * 383 223 36 18 chr13 38173643 38173755 -63699414 - MER5A DNA MER1_type -48 141 28 316 331 45 25 chr13 38173819 38173976 -63699193 + MIR3 SINE MIR 28 187 -21 243 253 0 38 chr13 38173992 38174071 -63699098 + MIR SINE MIR 131 206 -56 2297 68 4 7 chr13 38174782 38175104 -63698065 - AluSc SINE Alu 0 322 2 426 291 26 7 chr13 38175253 38175404 -63697765 - MIR SINE MIR -10 252 99 858 204 82 66 chr13 38175554 38175858 -63697311 - L1MC5 LINE L1 -48 7913 7605 220 313 40 13 chr13 38176113 38176263 -63696906 + MIR3 SINE MIR 47 200 -8 242 229 117 10 chr13 38177062 38177159 -63696010 + MIR SINE MIR 56 162 -46 422 127 0 0 chr13 38177853 38177916 -63695253 + MER116 DNA Mariner 2 64 -16 343 276 32 8 chr13 38182225 38182348 -63690821 - MIR3 SINE MIR -2 206 81 306 225 70 0 chr13 38183301 38183367 -63689802 - MER21B LTR ERV1 -112 751 681 478 244 57 52 chr13 38183367 38183560 -63689609 - LTR45B LTR ERV1 0 489 296 500 236 58 42 chr13 38183952 38184143 -63689026 + LTR45B LTR ERV1 296 489 0 430 195 63 14 chr13 38184821 38185015 -63688154 + LTR57-int LTR ERVL 438 707 -4636 * 507 173 0 0 chr13 38185008 38185089 -63688080 + MER84-int LTR ERV1 1208 1288 -498 * 6302 191 75 69 chr13 38185088 38188269 -63684900 + MER84-int LTR ERV1 885 5602 -708 298 360 20 0 chr13 38188667 38188820 -63684349 + MER84-int LTR ERV1 4274 4429 -525 1837 68 63 0 chr13 38189013 38189250 -63683919 + AluY SINE Alu 49 300 -11 3266 184 21 2 chr13 38190011 38190615 -63682554 - L1MB2 LINE L1 -78 6093 5478 2051 148 3 0 chr13 38190629 38190926 -63682243 + AluSx SINE Alu 1 298 -14 1802 216 68 7 chr13 38191164 38191604 -63681565 - MLT1C LTR MaLR 0 467 1 2380 97 64 11 chr13 38192603 38192963 -63680206 + L1PA11 LINE L1 5796 6174 0 215 279 35 35 chr13 38193045 38193058 -63680111 + MIR SINE MIR 69 81 -127 1629 183 79 28 chr13 38193058 38193414 -63679755 - MLT1A2 LTR MaLR 0 374 1 215 279 35 35 chr13 38193414 38193486 -63679683 + MIR SINE MIR 80 151 -57 270 275 143 37 chr13 38195443 38195632 -63677537 + MIR SINE MIR 20 228 -34 2054 130 3 7 chr13 38195702 38196001 -63677168 - AluSx SINE Alu -14 298 1 202 182 0 45 chr13 38196076 38196120 -63677049 + GA-rich Low_complexity Low_complexity 4 45 0 692 179 112 31 chr13 38196197 38196393 -63676776 - MIR SINE MIR 0 262 51 292 338 69 10 chr13 38196437 38196634 -63676535 + MIR SINE MIR 35 248 -14 201 74 0 0 chr13 38198234 38198261 -63674908 + (TA)n Simple_repeat Simple_repeat 2 28 0 2540 61 0 3 chr13 38198261 38198558 -63674611 - AluY SINE Alu -15 296 1 1832 297 43 91 chr13 38198560 38199049 -63674120 - Charlie7 DNA MER1_type -69 2543 2032 560 202 8 8 chr13 38199049 38199178 -63673991 + L1MB7 LINE L1 6038 6166 -18 3202 63 55 26 chr13 38199178 38199621 -63673548 - L1PB2 LINE L1 -2 6149 5680 1832 297 43 91 chr13 38199621 38200169 -63673000 - Charlie7 DNA MER1_type -578 2034 1487 1048 147 6 6 chr13 38200219 38200375 -63672794 - AluJ SINE Alu -28 284 129 199 0 0 61 chr13 38200379 38200412 -63672757 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 730 179 8 0 chr13 38200533 38200650 -63672519 - AluJ SINE Alu -193 119 2 1157 266 125 20 chr13 38200656 38201104 -63672065 - Charlie7 DNA MER1_type -1141 1471 977 1074 262 118 32 chr13 38201108 38201892 -63671277 - L2 LINE L2 0 3313 2418 502 43 0 0 chr13 38201892 38201961 -63671208 - L1PA2 LINE L1 0 6155 6087 1074 262 118 32 chr13 38201961 38202180 -63670989 - L2 LINE L2 -895 2418 2219 741 259 123 13 chr13 38202188 38202505 -63670664 - Charlie7 DNA MER1_type -1646 966 615 908 296 71 24 chr13 38202536 38202945 -63670224 - Charlie7 DNA MER1_type -2096 516 89 1340 159 0 0 chr13 38202954 38203155 -63670014 - AluJb SINE Alu -1 311 111 509 263 133 78 chr13 38204690 38204814 -63668355 - LTR33 LTR ERVL -156 365 249 4047 134 123 7 chr13 38204814 38205551 -63667618 + LTR1B LTR ERV1 2 824 -2 509 263 133 78 chr13 38205551 38205772 -63667397 - LTR33 LTR ERVL -272 249 1 203 229 55 101 chr13 38205795 38205904 -63667265 - MER5A DNA MER1_type -22 167 64 2309 98 3 0 chr13 38205920 38206227 -63666942 + AluSp SINE Alu 1 308 -5 2206 125 0 3 chr13 38206368 38206672 -63666497 + AluSq SINE Alu 5 307 -6 453 36 0 0 chr13 38206672 38206727 -63666442 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 373 240 20 10 chr13 38208278 38208378 -63664791 + MLT1J2 LTR MaLR 63 163 -287 308 282 34 34 chr13 38208648 38208765 -63664404 - MIR SINE MIR -112 150 34 2536 47 0 13 chr13 38209811 38210109 -63663060 + AluY SINE Alu 1 294 -17 251 212 0 15 chr13 38210450 38210516 -63662653 + CT-rich Low_complexity Low_complexity 3 67 0 630 195 30 67 chr13 38210760 38210978 -63662191 - MER106B DNA MER1_type -1 1058 22 228 86 0 0 chr13 38211553 38211588 -63661581 + (GA)n Simple_repeat Simple_repeat 2 36 0 1655 188 46 56 chr13 38211871 38212264 -63660905 + MSTD LTR MaLR 8 396 0 2193 121 0 7 chr13 38213491 38213797 -63659372 + AluSx SINE Alu 1 304 -8 191 254 8 110 chr13 38214318 38214436 -63658733 + MIR SINE MIR 112 217 -45 44095 47 0 9 chr13 38215250 38221444 -63651725 + L1PA3 LINE L1 9 6148 -7 25 0 0 0 chr13 38221444 38221469 -63651700 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr13 38221473 38221495 -63651674 + (A)n Simple_repeat Simple_repeat 1 22 0 1982 158 3 0 chr13 38221554 38222025 -63651144 + AluSx SINE Alu 1 312 0 5966 54 1 0 chr13 38222059 38222744 -63650425 + L1PA7 LINE L1 5466 6151 -3 393 274 232 12 chr13 38223753 38223921 -63649248 - MIR SINE MIR -56 206 2 1772 167 48 12 chr13 38224152 38224487 -63648682 + THE1C LTR MaLR 29 375 0 548 220 16 14 chr13 38224668 38224699 -63648470 - L1PB4 LINE L1 -4 6162 6133 2255 124 156 13 chr13 38224699 38225071 -63648098 + MSTA LTR MaLR 4 428 0 548 220 16 14 chr13 38225071 38225181 -63647988 - L1PB4 LINE L1 -33 6133 6024 1160 183 0 38 chr13 38225869 38226082 -63647087 + AluJo SINE Alu 85 289 -23 258 250 25 12 chr13 38226166 38226246 -63646923 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 512 234 84 45 chr13 38227460 38227500 -63645669 - MLT1H LTR MaLR -2 550 513 984 217 68 5 chr13 38227500 38227707 -63645462 + MER58A DNA MER1_type 3 222 -2 512 234 84 45 chr13 38227707 38227877 -63645292 - MLT1H LTR MaLR -39 513 322 239 180 144 77 chr13 38227911 38228044 -63645125 - MLT1I LTR MaLR -270 139 96 261 0 0 0 chr13 38228306 38228335 -63644834 + (GA)n Simple_repeat Simple_repeat 2 30 0 328 243 9 54 chr13 38228484 38228595 -63644574 + LTR33A LTR ERVL 418 523 0 346 295 82 76 chr13 38228603 38229105 -63644064 - L1MC/D LINE L1 -2038 5770 5266 2740 171 0 14 chr13 38229128 38229560 -63643609 + MSTB LTR MaLR 1 426 0 10496 149 9 33 chr13 38229560 38231251 -63641918 + MSTB-int LTR MaLR 1 1651 0 2569 189 12 7 chr13 38231251 38231675 -63641494 + MSTB LTR MaLR 1 426 0 26 50 0 0 chr13 38231708 38231748 -63641421 + AT_rich Low_complexity Low_complexity 1 40 0 1900 212 29 73 chr13 38232224 38232754 -63640415 + MLT2B3 LTR ERVL 3 405 -48 321 335 87 5 chr13 38232784 38233151 -63640018 - L1MC/D LINE L1 -1544 4602 4186 192 77 0 0 chr13 38233630 38233656 -63639513 + (TG)n Simple_repeat Simple_repeat 2 27 0 367 296 136 24 chr13 38233860 38234156 -63639013 - MLT1L LTR MaLR -6 505 235 43740 32 21 2 chr13 38234443 38240480 -63632689 - L1PA2 LINE L1 0 6155 1 875 158 8 0 chr13 38240487 38240620 -63632549 - AluJo SINE Alu -176 136 3 430 311 114 17 chr13 38240652 38241003 -63632166 - L1MC/D LINE L1 -2323 3823 3439 223 184 20 0 chr13 38241085 38241134 -63632035 + CT-rich Low_complexity Low_complexity 1 50 0 3729 73 0 0 chr13 38241451 38241917 -63631252 - MER41A LTR ERV1 -88 466 1 9862 68 21 12 chr13 38241917 38243221 -63629948 - MER41A-int LTR ERV1 -2 5944 4630 1338 133 0 10 chr13 38243207 38243410 -63629759 - PRIMA41-int LTR ERV1 -2140 2875 2675 * 451 138 32 64 chr13 38243401 38243495 -63629674 - PRIMA41-int LTR ERV1 -7662 94 4 * 31855 110 11 57 chr13 38243877 38250333 -63622836 + L1PA7 LINE L1 10 6153 -1 234 0 0 0 chr13 38251046 38251072 -63622097 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 857 196 49 0 chr13 38251072 38251215 -63621954 - FRAM SINE Alu -16 150 1 579 295 124 5 chr13 38251241 38251451 -63621718 - MLT1J1 LTR MaLR -5 441 207 498 275 8 0 chr13 38251463 38251594 -63621575 - MLT1J2 LTR MaLR -282 168 37 1747 167 17 17 chr13 38251676 38251976 -63621193 + AluJo SINE Alu 3 302 -10 2511 84 0 0 chr13 38252449 38252760 -63620409 - AluSq SINE Alu -2 311 1 234 0 0 0 chr13 38252876 38252902 -63620267 + (TC)n Simple_repeat Simple_repeat 1 26 0 412 266 96 15 chr13 38252907 38253106 -63620063 + MLT1J1 LTR MaLR 231 445 -1 1719 209 90 37 chr13 38253286 38253798 -63619371 - HsTC2 DNA Tc2 0 1899 1185 359 265 109 14 chr13 38254380 38254527 -63618642 + MIR SINE MIR 89 249 -13 18411 95 6 0 chr13 38254673 38257980 -63615189 + L1PA7 LINE L1 2823 6152 -2 305 162 15 0 chr13 38258706 38258774 -63614395 + CT-rich Low_complexity Low_complexity 2 70 0 192 310 92 23 chr13 38259914 38260001 -63613168 - L2 LINE L2 0 3272 3180 257 285 73 56 chr13 38261773 38261952 -63611217 + L2 LINE L2 368 549 -2765 349 267 0 22 chr13 38262033 38262123 -63611046 + L2 LINE L2 3183 3270 -2 446 279 81 15 chr13 38262149 38262346 -63610823 + L3 LINE CR1 662 871 -706 219 273 129 38 chr13 38262346 38262478 -63610691 + L3 LINE CR1 1219 1362 -215 26 30 0 0 chr13 38263472 38263505 -63609664 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr13 38263505 38263530 -63609639 + (CA)n Simple_repeat Simple_repeat 2 26 0 1762 138 58 21 chr13 38263535 38263789 -63609380 + MER7A DNA MER2_type 10 278 -2760 4608 114 14 29 chr13 38263789 38264526 -63608643 - LTR8A LTR ERV1 0 727 2 1762 138 58 21 chr13 38264526 38264597 -63608572 + MER7A DNA MER2_type 278 345 -1 618 264 178 49 chr13 38264730 38265117 -63608052 - L2 LINE L2 -14 3299 2863 183 328 15 0 chr13 38265524 38265591 -63607578 + MIR SINE MIR 195 262 0 236 387 89 26 chr13 38268747 38269049 -63604120 + L3 LINE CR1 147 467 -1110 30 0 0 0 chr13 38270038 38270068 -63603101 + AT_rich Low_complexity Low_complexity 1 30 0 963 210 0 0 chr13 38270235 38270402 -63602767 + FAM SINE Alu 1 167 -8 1405 258 124 45 chr13 38270614 38271587 -63601582 - L2 LINE L2 -2 3311 2268 316 274 32 42 chr13 38272421 38272516 -63600653 + L2 LINE L2 3200 3293 -20 644 169 0 8 chr13 38273308 38273432 -63599737 - MER69 DNA AcHobo -10 2516 2394 12006 110 11 58 chr13 38273448 38276307 -63596862 + L1P3 LINE L1 9 2850 -3611 327 327 139 15 chr13 38277143 38277473 -63595696 - L1ME4a LINE L1 -99 6022 5652 2069 126 7 7 chr13 38278941 38279243 -63593926 + AluSx SINE Alu 1 302 -10 231 36 0 0 chr13 38279440 38279468 -63593701 + (TG)n Simple_repeat Simple_repeat 1 28 0 588 171 9 9 chr13 38279888 38279993 -63593176 - FLAM_A SINE Alu -23 119 15 1662 174 9 31 chr13 38280731 38281048 -63592121 - AluJb SINE Alu -2 310 1 1039 184 5 42 chr13 38281235 38281452 -63591717 + MER6B DNA MER2_type 2 210 0 26 30 0 0 chr13 38283525 38283558 -63589611 + AT_rich Low_complexity Low_complexity 1 33 0 427 199 252 0 chr13 38283771 38283902 -63589267 - MER105 DNA DNA -16 188 25 275 303 36 76 chr13 38284213 38284402 -63588767 - MIR SINE MIR -45 163 12 2345 67 3 7 chr13 38286097 38286397 -63586772 + AluY SINE Alu 1 299 -12 2273 116 0 0 chr13 38286584 38286887 -63586282 + AluSx SINE Alu 1 303 -9 669 78 72 0 chr13 38287483 38287649 -63585520 + (TA)n Simple_repeat Simple_repeat 1 178 0 212 95 0 48 chr13 38287649 38287691 -63585478 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 654 88 65 6 chr13 38287691 38287861 -63585308 + (TA)n Simple_repeat Simple_repeat 1 180 0 1739 174 46 0 chr13 38288131 38288412 -63584757 + AluJb SINE Alu 2 295 -17 1865 170 0 3 chr13 38288412 38288712 -63584457 + AluJb SINE Alu 1 299 -13 2343 96 0 0 chr13 38291272 38291565 -63581604 + AluSg SINE Alu 3 295 -15 227 248 132 8 chr13 38292008 38292129 -63581040 + L1MC4 LINE L1 7783 7918 -124 240 270 0 11 chr13 38292136 38292225 -63580944 - L1MC4 LINE L1 -1347 6695 6608 2208 126 0 3 chr13 38292509 38292818 -63580351 - AluSg SINE Alu 0 310 3 2315 118 0 0 chr13 38292820 38293125 -63580044 - AluSx SINE Alu -7 305 1 193 374 16 21 chr13 38294229 38294416 -63578753 + L2 LINE L2 2028 2213 -1101 923 206 0 6 chr13 38294529 38294709 -63578460 + AluSg/x SINE Alu 121 299 -13 1383 158 115 29 chr13 38294711 38294989 -63578180 + AluJo SINE Alu 1 302 0 2293 94 0 10 chr13 38295001 38295300 -63577869 + AluSx SINE Alu 1 296 -16 517 100 91 0 chr13 38295301 38295411 -63577758 - MER33 DNA MER1_type -81 282 163 318 78 20 0 chr13 38295400 38295451 -63577718 - Alu SINE Alu -2 300 249 * 2183 91 0 0 chr13 38295582 38295857 -63577312 - AluSx SINE Alu -37 275 1 500 119 80 152 chr13 38295859 38296010 -63577159 - MER33 DNA MER1_type -184 140 1 354 373 6 0 chr13 38296062 38296231 -63576938 + L2 LINE L2 2482 2651 -663 1242 126 5 5 chr13 38297932 38298131 -63575038 + L1PB2 LINE L1 5953 6151 0 21 71 0 0 chr13 38298775 38298817 -63574352 + AT_rich Low_complexity Low_complexity 1 42 0 4847 163 30 68 chr13 38299025 38300221 -63572948 + L1MC3 LINE L1 6634 7784 -1 198 0 0 0 chr13 38300642 38300664 -63572505 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 477 34 0 0 chr13 38300663 38300722 -63572447 + (CA)n Simple_repeat Simple_repeat 2 60 0 1817 153 14 0 chr13 38300732 38301019 -63572150 - AluJb SINE Alu -21 291 1 250 264 216 14 chr13 38301114 38301262 -63571907 - MIR SINE MIR -49 213 36 1085 234 102 41 chr13 38301362 38301824 -63571345 + L1MC4a LINE L1 6308 6797 -1011 1146 221 28 22 chr13 38301919 38302096 -63571073 + L1M4 LINE L1 4651 4832 -1314 216 0 0 0 chr13 38302096 38302120 -63571049 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1146 221 28 22 chr13 38302120 38302264 -63570905 + L1M4 LINE L1 4832 4974 -1172 814 100 0 0 chr13 38302292 38302402 -63570767 + AluSp/q SINE Alu 194 303 -10 736 234 70 8 chr13 38302412 38302656 -63570513 + L1MC4 LINE L1 7708 7966 -76 449 153 15 73 chr13 38302640 38302777 -63570392 + L1MC5 LINE L1 7603 7731 -230 * 352 205 178 49 chr13 38302916 38302938 -63570231 + L1MC5 LINE L1 7705 7723 -238 1902 145 0 7 chr13 38302938 38303257 -63569912 - AluJb SINE Alu 0 317 1 352 205 178 49 chr13 38303257 38303418 -63569751 + L1MC5 LINE L1 7723 7913 -48 2468 69 0 0 chr13 38303786 38304091 -63569078 + AluY SINE Alu 1 305 -6 874 86 8 0 chr13 38304240 38304357 -63568812 + AluJb SINE Alu 1 118 -194 38 0 0 0 chr13 38304357 38304395 -63568774 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr13 38304820 38304852 -63568317 + AT_rich Low_complexity Low_complexity 1 32 0 225 309 71 0 chr13 38304930 38305014 -63568155 - MIR SINE MIR -92 170 81 1909 153 10 16 chr13 38305079 38305386 -63567783 + AluJb SINE Alu 1 305 -7 843 147 0 22 chr13 38305471 38305607 -63567562 + FLAM_C SINE Alu 1 133 0 2293 78 48 0 chr13 38305615 38305909 -63567260 + AluSc SINE Alu 1 308 -1 1706 169 7 13 chr13 38305933 38306241 -63566928 + AluJb SINE Alu 1 306 -6 2357 99 0 0 chr13 38306414 38306716 -63566453 - AluSq SINE Alu -11 302 1 299 224 143 27 chr13 38309930 38310189 -63562980 - L1ME4a LINE L1 -5 6116 5828 234 259 19 0 chr13 38310200 38310254 -63562915 + MIR SINE MIR 195 249 -13 257 317 124 0 chr13 38310341 38310486 -63562683 + MIR SINE MIR 8 170 -92 317 287 96 22 chr13 38310502 38310638 -63562531 - L1ME4a LINE L1 -495 5626 5481 260 264 105 34 chr13 38310895 38311191 -63561978 - L1ME4a LINE L1 -1449 4697 4381 1998 163 3 0 chr13 38311577 38311884 -63561285 - AluJb SINE Alu -4 308 1 184 326 0 54 chr13 38312173 38312265 -63560904 + L2 LINE L2 2601 2687 -627 809 117 39 7 chr13 38312271 38312425 -63560744 - L1MA4 LINE L1 -5 6295 6137 21 0 0 0 chr13 38312588 38312609 -63560560 + AT_rich Low_complexity Low_complexity 1 21 0 4713 123 47 10 chr13 38312710 38313909 -63559260 - L1MA4A LINE L1 -275 6028 4785 193 350 86 29 chr13 38314069 38314209 -63558960 + L2 LINE L2 2937 3084 -188 284 0 0 27 chr13 38314595 38314632 -63558537 + (TCTCCC)n Simple_repeat Simple_repeat 1 36 0 4644 68 25 12 chr13 38314633 38315308 -63557861 + SVA Other Other 20 703 -683 281 152 0 15 chr13 38315442 38315508 -63557661 + L1PB4 LINE L1 6092 6156 0 690 109 0 0 chr13 38315516 38315608 -63557561 - MER31A LTR ERV1 -393 92 1 1513 164 171 32 chr13 38316060 38316494 -63556675 + LTR54B LTR ERV1 1 494 -4 657 340 62 35 chr13 38316734 38317166 -63556003 - LTR16A LTR ERVL 0 450 7 451 299 60 57 chr13 38317526 38318047 -63555122 - L2 LINE L2 0 3313 2514 225 355 0 0 chr13 38318279 38318355 -63554814 + LTR16B LTR ERVL 1 76 -388 328 264 0 78 chr13 38319051 38319244 -63553925 + GA-rich Low_complexity Low_complexity 1 178 0 1238 174 5 9 chr13 38319926 38320145 -63553024 + AluJo SINE Alu 1 218 -94 370 177 73 179 chr13 38320208 38320716 -63552453 - L1ME4a LINE L1 -50 6071 5618 240 218 0 103 chr13 38321781 38321868 -63551301 + L2 LINE L2 3190 3267 -5 497 205 77 64 chr13 38321975 38322131 -63551038 + MER117 DNA MER1_type 6 163 -34 874 217 25 43 chr13 38322207 38322442 -63550727 + MIR SINE MIR 31 261 -1 369 250 138 17 chr13 38322897 38323013 -63550156 + MIR SINE MIR 87 216 -46 278 315 56 42 chr13 38323721 38323864 -63549305 - MIR3 SINE MIR -45 163 19 233 243 27 81 chr13 38324157 38324248 -63548921 - L1ME LINE L1 -208 5913 5827 2171 107 0 0 chr13 38324248 38324556 -63548613 - AluY SINE Alu -3 308 1 233 243 27 81 chr13 38324556 38324575 -63548594 - L1ME LINE L1 -294 5827 5809 214 229 0 21 chr13 38325825 38325873 -63547296 + L2 LINE L2 3261 3307 -6 860 254 22 17 chr13 38326358 38326590 -63546579 + MIR SINE MIR 18 250 -12 214 281 34 67 chr13 38327994 38328083 -63545086 - MIR SINE MIR -157 105 20 192 167 0 28 chr13 38331463 38331499 -63541670 - MER5A DNA MER1_type -115 74 40 230 167 24 0 chr13 38331917 38331959 -63541210 + L2 LINE L2 3263 3305 -8 2254 113 39 36 chr13 38332150 38332513 -63540656 - THE1B LTR MaLR 0 364 1 1776 312 114 34 chr13 38333120 38334187 -63538982 + L3 LINE CR1 301 1453 -124 2074 119 0 0 chr13 38334385 38334678 -63538491 + AluSx SINE Alu 1 293 -19 189 288 220 17 chr13 38335758 38335876 -63537293 - L2 LINE L2 -5 3308 3167 299 235 241 35 chr13 38336919 38337011 -63536158 - MER5A DNA MER1_type -4 185 113 1378 186 54 0 chr13 38337011 38337291 -63535878 - AluJb SINE Alu -17 295 1 299 235 241 35 chr13 38337291 38337344 -63535825 - MER5A DNA MER1_type -76 113 5 2960 142 10 12 chr13 38337583 38338069 -63535100 - MER31A LTR ERV1 0 485 1 1556 155 72 21 chr13 38338169 38338459 -63534710 + AluJo SINE Alu 1 305 -7 2068 93 0 0 chr13 38338505 38338785 -63534384 + AluSc SINE Alu 26 305 -4 224 287 65 73 chr13 38338837 38339015 -63534154 - MIR SINE MIR -44 218 35 186 295 54 8 chr13 38340788 38340917 -63532252 + L2 LINE L2 2758 2892 -422 * 223 307 43 97 chr13 38340893 38341150 -63532019 + L2 LINE L2 2817 3059 -254 948 183 61 5 chr13 38341590 38341787 -63531382 + L1MDa LINE L1 196 403 -6137 189 314 20 0 chr13 38342711 38342762 -63530407 - L2 LINE L2 -563 2751 2700 899 278 78 61 chr13 38343061 38343600 -63529569 - L1MC/D LINE L1 -2006 5802 5255 244 306 90 0 chr13 38343920 38344031 -63529138 - L2 LINE L2 -591 2723 2603 1377 179 13 152 chr13 38344271 38344724 -63528445 - MLT1B LTR MaLR 0 390 1 929 124 0 0 chr13 38345866 38345995 -63527174 - FLAM_C SINE Alu -4 129 1 2039 126 0 0 chr13 38346885 38347178 -63525991 + AluSx SINE Alu 1 293 -19 1163 80 74 0 chr13 38347563 38347726 -63525443 - L1PA11 LINE L1 0 6174 6000 2113 126 85 18 chr13 38348598 38348939 -63524230 - THE1B LTR MaLR 0 364 1 11970 89 11 3 chr13 38348939 38350507 -63522662 - THE1B-int LTR MaLR 0 1580 1 1973 134 102 15 chr13 38350507 38350842 -63522327 - THE1B LTR MaLR 0 364 1 314 161 113 0 chr13 38351276 38351338 -63521831 - L2 LINE L2 -7 3306 3238 326 200 48 67 chr13 38353280 38353385 -63519784 - L2 LINE L2 -777 2537 2435 1030 161 49 45 chr13 38353400 38353624 -63519545 - MER119 DNA MER1_type 0 583 359 533 260 104 58 chr13 38353624 38354110 -63519059 - MER34B LTR ERV1 0 565 5 * 1172 182 50 1 chr13 38354086 38354430 -63518739 - MER119 DNA MER1_type -182 401 10 692 239 94 91 chr13 38354999 38355329 -63517840 + MER46C DNA MER2_type 1 331 -7 2152 118 0 0 chr13 38355443 38355748 -63517421 + AluSx SINE Alu 1 305 -7 399 41 0 0 chr13 38355748 38355797 -63517372 + (TA)n Simple_repeat Simple_repeat 2 50 0 187 115 0 0 chr13 38356463 38356489 -63516680 + MIR SINE MIR 225 250 -12 470 336 22 0 chr13 38356706 38356840 -63516329 + MIR SINE MIR 47 183 -79 258 333 0 44 chr13 38356952 38357042 -63516127 + L3 LINE CR1 180 265 -1312 207 0 0 0 chr13 38357497 38357520 -63515649 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 209 292 77 0 chr13 38357824 38357889 -63515280 + L3 LINE CR1 607 676 -901 583 260 90 86 chr13 38358256 38358721 -63514448 - L2 LINE L2 -3 3310 2844 2900 170 34 16 chr13 38358848 38359354 -63513815 + MLT2B2 LTR ERVL 1 515 0 592 253 280 3 chr13 38359354 38359647 -63513522 - L2 LINE L2 -686 2628 2255 311 255 189 46 chr13 38359605 38359801 -63513368 + L3 LINE CR1 1190 1413 -164 * 2341 87 10 0 chr13 38360773 38361082 -63512087 - AluSx SINE Alu 0 312 1 3387 144 28 2 chr13 38362589 38363129 -63510040 + MER41C LTR ERV1 1 554 0 819 270 80 14 chr13 38363544 38363886 -63509283 - L1ME LINE L1 -422 5699 5338 23 33 0 0 chr13 38365558 38365588 -63507581 + AT_rich Low_complexity Low_complexity 1 30 0 812 140 0 15 chr13 38365829 38365965 -63507204 - L1PB1 LINE L1 -1 6150 6017 187 293 67 0 chr13 38366126 38366201 -63506968 - L2 LINE L2 -1454 1860 1781 225 0 0 0 chr13 38366202 38366227 -63506942 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1474 130 10 0 chr13 38366238 38366446 -63506723 - AluSq SINE Alu -47 266 57 1084 136 156 31 chr13 38366585 38366842 -63506327 - L1MB8 LINE L1 -118 6060 5772 338 310 199 14 chr13 38366871 38367158 -63506011 - L1MC4a LINE L1 -1482 6326 5987 2414 51 41 0 chr13 38367162 38367457 -63505712 - AluY SINE Alu -4 307 1 566 245 217 0 chr13 38367469 38367759 -63505410 - L2 LINE L2 -1597 1717 1365 316 287 9 46 chr13 38367763 38367871 -63505298 - L2 LINE L2 -2067 1247 1144 1619 223 98 38 chr13 38367918 38368491 -63504678 - L1MC4 LINE L1 -2 8040 7434 548 82 0 24 chr13 38369685 38369770 -63503399 - L1PA16 LINE L1 -2 6164 6082 1197 130 10 24 chr13 38371831 38372039 -63501130 - L1MD2 LINE L1 -1 6358 6154 631 214 120 94 chr13 38372461 38372877 -63500292 - L1MC4 LINE L1 -133 7909 7483 247 206 137 0 chr13 38372881 38372954 -63500215 + L1M4 LINE L1 2664 2746 -3400 764 185 20 70 chr13 38373006 38373206 -63499963 + MER20 DNA MER1_type 30 219 0 355 221 157 36 chr13 38373274 38373414 -63499755 + L2 LINE L2 3141 3297 -16 323 178 0 14 chr13 38373992 38374065 -63499104 + C-rich Low_complexity Low_complexity 4 75 0 1688 170 18 4 chr13 38374066 38374342 -63498827 - AluJb SINE Alu -32 280 1 1862 152 10 10 chr13 38374347 38374650 -63498519 - AluSx SINE Alu -9 303 1 212 250 0 0 chr13 38375876 38375924 -63497245 + MIR SINE MIR 82 129 -133 693 258 52 14 chr13 38376183 38376396 -63496773 - MIR SINE MIR -19 243 23 497 257 9 0 chr13 38378058 38378171 -63494998 - MER81 DNA DNA 0 114 1 1551 194 76 45 chr13 38378552 38379000 -63494169 + MLT1C LTR MaLR 6 467 0 1056 161 0 87 chr13 38379219 38379300 -63493869 - AluJo SINE Alu -101 211 125 1906 146 0 10 chr13 38379300 38379615 -63493554 - AluSx SINE Alu 0 312 1 1056 161 0 87 chr13 38379615 38379750 -63493419 - AluJo SINE Alu -187 125 13 325 238 125 12 chr13 38380441 38380601 -63492568 + L2 LINE L2 2888 3065 -248 320 157 121 60 chr13 38380671 38380754 -63492415 + MER82 DNA MER2_type 7 94 -559 6393 49 4 9 chr13 38381042 38381859 -63491310 + SVA Other Other 596 1408 0 223 337 11 11 chr13 38381985 38382077 -63491092 + MIR SINE MIR 34 125 -83 325 337 40 20 chr13 38382415 38382614 -63490555 + L2 LINE L2 3103 3305 -8 294 200 29 0 chr13 38382711 38382781 -63490388 - L1ME4a LINE L1 -82 6039 5968 240 253 121 40 chr13 38383329 38383428 -63489741 + L2 LINE L2 3193 3299 -14 1509 174 97 0 chr13 38384780 38385038 -63488131 + AluSx SINE Alu 1 283 -29 231 301 41 0 chr13 38385302 38385375 -63487794 + L2 LINE L2 3235 3310 -3 1059 167 0 17 chr13 38386028 38386202 -63486967 + FAM SINE Alu 1 171 -4 3218 127 64 7 chr13 38386259 38386803 -63486366 + L1MC1 LINE L1 5759 6333 0 14246 174 23 14 chr13 38386889 38390714 -63482455 + L1PB1 LINE L1 2295 6149 -2 850 315 42 24 chr13 38390799 38391180 -63481989 - L2 LINE L2 -1 3312 2925 406 302 26 37 chr13 38391277 38391466 -63481703 - MLT1J2 LTR MaLR 0 450 264 289 209 67 48 chr13 38391516 38391621 -63481548 - MLT1J1 LTR MaLR -311 135 29 3055 129 38 40 chr13 38392731 38393288 -63479881 + L1MA8 LINE L1 5736 6291 0 181 327 133 9 chr13 38393470 38393583 -63479586 + MIR SINE MIR 132 258 -4 216 273 91 0 chr13 38393881 38393936 -63479233 + L3 LINE CR1 1443 1502 -75 567 268 21 16 chr13 38394691 38394881 -63478288 + L1MEd LINE L1 19 209 -5910 618 249 83 118 chr13 38394941 38395256 -63477913 + L1M4 LINE L1 2676 3000 -3146 1499 203 124 14 chr13 38395256 38395611 -63477558 - MSTD LTR MaLR -2 394 1 618 249 83 118 chr13 38395611 38395634 -63477535 + L1M4 LINE L1 3000 3022 -3124 746 182 0 8 chr13 38395634 38395755 -63477414 + 5S rRNA rRNA 2 121 0 618 249 83 118 chr13 38395755 38396232 -63476937 + L1M4 LINE L1 3022 3464 -2682 279 219 96 0 chr13 38396234 38396307 -63476862 + MLT1C LTR MaLR 1 80 -387 2160 182 63 11 chr13 38396485 38396929 -63476240 + MLT1C LTR MaLR 1 467 0 216 222 0 0 chr13 38396985 38397030 -63476139 - MIR3 SINE MIR -48 160 116 2196 115 3 0 chr13 38398188 38398483 -63474686 - AluSx SINE Alu -16 296 1 296 253 11 0 chr13 38399866 38399953 -63473216 - LTR43 LTR ERV1 -311 291 204 817 181 19 0 chr13 38400287 38400447 -63472722 - MIR SINE MIR -72 190 28 1260 239 36 18 chr13 38400703 38401033 -63472136 - LTR47B LTR ERVL 0 443 108 221 324 29 19 chr13 38401367 38401472 -63471697 - L2 LINE L2 -39 3274 3169 555 186 0 10 chr13 38401472 38401569 -63471600 + MER82 DNA MER2_type 1 96 -557 443 229 10 10 chr13 38401604 38401700 -63471469 - MER82 DNA MER2_type -110 543 448 281 328 17 9 chr13 38401764 38401880 -63471289 + MIR SINE MIR 31 147 -115 26 0 0 0 chr13 38401987 38402013 -63471156 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr13 38402241 38402264 -63470905 + AT_rich Low_complexity Low_complexity 1 23 0 634 279 53 5 chr13 38402847 38403055 -63470114 + MIR SINE MIR 32 249 -13 2356 71 0 52 chr13 38403797 38404105 -63469064 + AluSx SINE Alu 3 294 -18 2331 60 43 0 chr13 38404105 38404387 -63468782 + AluY SINE Alu 1 294 -17 2279 104 3 0 chr13 38404658 38404957 -63468212 + AluY SINE Alu 1 300 -11 594 229 35 47 chr13 38405024 38405194 -63467975 + L1ME1 LINE L1 5984 6151 -15 609 291 38 14 chr13 38405384 38405594 -63467575 - MIR SINE MIR -12 250 36 1717 181 7 7 chr13 38406604 38406902 -63466267 - AluJb SINE Alu -14 298 1 1658 160 23 23 chr13 38407124 38407424 -63465745 + AluJb SINE Alu 1 300 -12 319 314 43 21 chr13 38408020 38408160 -63465009 + MIR SINE MIR 46 188 -74 2540 56 0 28 chr13 38408166 38408486 -63464683 + AluY SINE Alu 1 311 0 225 175 105 0 chr13 38408925 38408982 -63464187 + MIR SINE MIR 197 259 -3 583 263 61 9 chr13 38409230 38409443 -63463726 + L1MCc LINE L1 32 255 -6168 * 1736 300 76 27 chr13 38409424 38409457 -63463712 + L1MCc LINE L1 1326 1356 -5766 2460 77 0 0 chr13 38409457 38409755 -63463414 + AluY SINE Alu 1 298 -13 1736 300 76 27 chr13 38409755 38410529 -63462640 + L1MCc LINE L1 1356 2091 -5031 2473 87 0 0 chr13 38410529 38410838 -63462331 + AluSq SINE Alu 2 310 -3 1736 300 76 27 chr13 38410838 38411135 -63462034 + L1MCc LINE L1 2091 2372 -4750 1801 148 3 53 chr13 38411135 38411439 -63461730 - AluJo SINE Alu -23 289 1 1736 300 76 27 chr13 38411439 38411515 -63461654 + L1MCc LINE L1 2372 2768 -4354 503 158 0 0 chr13 38411520 38411596 -63461573 - Tigger5 DNA MER2_type 0 2323 2248 466 186 54 4 chr13 38411598 38411727 -63461442 - Tigger5 DNA MER2_type -2130 193 1 231 146 0 0 chr13 38411727 38411768 -63461401 + L1MCc LINE L1 2714 2754 -4187 641 167 45 15 chr13 38411880 38412012 -63461157 + L1MD1 LINE L1 6084 6219 -23 393 277 7 51 chr13 38414228 38414365 -63458804 - MIR SINE MIR -52 210 80 2069 126 3 14 chr13 38414957 38415250 -63457919 - AluSx SINE Alu -22 290 1 219 36 0 0 chr13 38615583 38615611 -63257558 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2256 69 7 0 chr13 38615613 38615889 -63257280 - AluY SINE Alu -33 278 1 427 204 7 99 chr13 38616185 38616262 -63256907 + MLT2F LTR ERVL 535 595 -68 189 74 0 0 chr13 38616262 38616289 -63256880 + (CATA)n Simple_repeat Simple_repeat 4 30 0 427 204 7 99 chr13 38616289 38616353 -63256816 + MLT2F LTR ERVL 595 663 0 830 222 13 13 chr13 38616936 38617166 -63256003 + L1M4 LINE L1 4308 4537 -1609 1245 194 66 36 chr13 38617764 38618083 -63255086 - MLT1A1 LTR MaLR -21 369 1 21 57 0 0 chr13 38619383 38619418 -63253751 + AT_rich Low_complexity Low_complexity 1 35 0 475 295 65 37 chr13 38619602 38619932 -63253237 + L1MC4 LINE L1 6630 6961 -1000 318 280 73 38 chr13 38620163 38620424 -63252745 + L1MC4a LINE L1 7144 7413 -395 2263 105 0 0 chr13 38620465 38620759 -63252410 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr13 38620843 38620867 -63252302 + AT_rich Low_complexity Low_complexity 1 24 0 240 214 0 18 chr13 38621020 38621076 -63252093 + GA-rich Low_complexity Low_complexity 4 58 0 1755 132 55 66 chr13 38621430 38621809 -63251360 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr13 38623491 38623519 -63249650 + AT_rich Low_complexity Low_complexity 1 28 0 9847 98 5 1 chr13 38623626 38625305 -63247864 - L1P3 LINE L1 -530 5624 3942 3194 79 7 11 chr13 38625305 38625750 -63247419 + L1PA8 LINE L1 5720 6172 0 26 0 0 0 chr13 38625750 38625776 -63247393 + AT_rich Low_complexity Low_complexity 1 26 0 1221 243 14 24 chr13 38626011 38626577 -63246592 + L1M3c LINE L1 826 1483 -4658 1340 193 46 39 chr13 38626581 38626866 -63246303 + AluJo SINE Alu 6 292 -20 1426 283 70 13 chr13 38626867 38627479 -63245690 + L1M4c LINE L1 1227 1873 -4511 1055 205 12 24 chr13 38627600 38627854 -63245315 - L1M4c LINE L1 -4494 1890 1640 286 244 26 13 chr13 38628663 38628741 -63244428 + MLT1L LTR MaLR 7 85 -530 208 176 20 0 chr13 38628885 38628936 -63244233 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1915 133 7 3 chr13 38629587 38629872 -63243297 - AluSx SINE Alu -26 286 1 35 24 0 0 chr13 38629938 38629980 -63243189 + AT_rich Low_complexity Low_complexity 1 42 0 4373 171 14 21 chr13 38630685 38631484 -63241685 + MER54B LTR ERVL 1 793 0 27 62 0 0 chr13 38631951 38631999 -63241170 + AT_rich Low_complexity Low_complexity 1 48 0 211 326 58 0 chr13 38632127 38632213 -63240956 - MIR SINE MIR -123 139 49 861 181 119 0 chr13 38632787 38632980 -63240189 + L1MA9 LINE L1 5896 6111 -201 1954 101 56 7 chr13 38633135 38633421 -63239748 - AluSq SINE Alu -13 300 1 414 0 0 0 chr13 38633526 38633572 -63239597 + (CA)n Simple_repeat Simple_repeat 1 46 0 762 157 29 0 chr13 38633572 38633712 -63239457 + L1MA9 LINE L1 6168 6311 -1 24 0 0 0 chr13 38633821 38633845 -63239324 + AT_rich Low_complexity Low_complexity 1 24 0 202 303 73 46 chr13 38634663 38634772 -63238397 - MIR3 SINE MIR -25 183 72 21 36 0 0 chr13 38635303 38635331 -63237838 + AT_rich Low_complexity Low_complexity 1 28 0 2444 113 49 24 chr13 38636004 38636430 -63236739 - LTR23 LTR ERV1 0 437 1 26 30 0 0 chr13 38636905 38636938 -63236231 + AT_rich Low_complexity Low_complexity 1 33 0 1667 178 168 11 chr13 38637199 38637569 -63235600 + MSTA LTR MaLR 1 428 0 8732 171 12 20 chr13 38637571 38639162 -63234007 + MSTA-int LTR MaLR 3 1580 0 1742 176 122 13 chr13 38639162 38639548 -63233621 + MSTA LTR MaLR 1 428 0 850 274 111 33 chr13 38640786 38641148 -63232021 - LTR16A1 LTR ERVL -12 445 56 838 172 16 11 chr13 38641670 38641856 -63231313 - MER53 DNA DNA -2 187 1 1093 119 0 34 chr13 38643000 38643177 -63229992 - AluY SINE Alu 0 311 141 915 118 30 0 chr13 38643616 38643785 -63229384 + CT-rich Low_complexity Low_complexity 1 174 0 1188 61 11 22 chr13 38643785 38643965 -63229204 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 7085 43 6 0 chr13 38644269 38645147 -63228022 + L1PA4 LINE L1 5272 6154 -1 234 354 30 15 chr13 38645595 38645793 -63227376 + HAL1 LINE L1 1472 1672 -835 22 94 0 0 chr13 38646270 38646334 -63226835 + AT_rich Low_complexity Low_complexity 1 64 0 31 0 0 0 chr13 38647205 38647236 -63225933 + AT_rich Low_complexity Low_complexity 1 31 0 1130 185 5 40 chr13 38647805 38648027 -63225142 - AluJo SINE Alu -98 214 1 21 36 0 0 chr13 38649589 38649617 -63223552 + AT_rich Low_complexity Low_complexity 1 28 0 2083 129 0 0 chr13 38650840 38651157 -63222012 + AluSp SINE Alu 1 317 0 23 0 0 0 chr13 38651381 38651404 -63221765 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 38651901 38651922 -63221247 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 38652059 38652089 -63221080 + AT_rich Low_complexity Low_complexity 1 30 0 222 275 0 0 chr13 38654674 38654754 -63218415 + (TA)n Simple_repeat Simple_repeat 1 80 0 200 338 0 0 chr13 38654812 38654880 -63218289 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 22 56 0 0 chr13 38655824 38655860 -63217309 + AT_rich Low_complexity Low_complexity 1 36 0 825 228 49 40 chr13 38656232 38656481 -63216688 + LTR12 LTR ERV1 208 489 -225 29 0 0 0 chr13 38656539 38656568 -63216601 + AT_rich Low_complexity Low_complexity 1 29 0 334 290 73 16 chr13 38657188 38657312 -63215857 + L2 LINE L2 3183 3313 0 3594 99 57 37 chr13 38657466 38658064 -63215105 - MER4B LTR ERV1 0 610 1 507 165 28 9 chr13 38658121 38658230 -63214939 + MLT2D LTR ERVL 5 115 -349 402 271 0 8 chr13 38658242 38658353 -63214816 - L1PB4 LINE L1 -6 6148 6045 3489 55 0 9 chr13 38658366 38658818 -63214351 - LTR7 LTR ERV1 -2 448 1 2512 82 45 13 chr13 38658818 38659198 -63213971 - HERVH LTR ERV1 0 7713 7322 1325 124 20 0 chr13 38659196 38659397 -63213772 - HERVH LTR ERV1 -1894 5819 5615 * 4314 142 1 1 chr13 38659428 38660090 -63213079 - HERVH LTR ERV1 -2564 5149 4488 3351 113 2 6 chr13 38660092 38660596 -63212573 - HERVH LTR ERV1 -3720 3993 3492 * 20411 92 53 26 chr13 38660586 38663788 -63209381 - HERVH LTR ERV1 -4423 3290 1 3324 72 11 7 chr13 38663790 38664236 -63208933 - LTR7 LTR ERV1 -2 448 1 1161 240 3 16 chr13 38664281 38664549 -63208620 + MLT2D LTR ERVL 111 469 -46 22 56 0 0 chr13 38664708 38664744 -63208425 + AT_rich Low_complexity Low_complexity 1 36 0 897 233 33 14 chr13 38664881 38665096 -63208073 + LTR1B LTR ERV1 1 219 -607 1979 152 28 60 chr13 38665101 38665587 -63207582 - MER4D LTR ERV1 -260 631 50 1237 189 114 4 chr13 38665574 38665828 -63207341 - MER49 LTR ERV1 -641 282 1 * 1394 231 42 68 chr13 38665855 38666354 -63206815 + MLT1D LTR MaLR 20 505 0 378 356 16 37 chr13 38666901 38667092 -63206077 - L2 LINE L2 0 3313 3127 3004 154 50 19 chr13 38667509 38668034 -63205135 + LTR38B LTR ERV1 9 555 -55 2071 107 24 3 chr13 38668034 38668332 -63204837 - AluSq SINE Alu -9 304 1 3004 154 50 19 chr13 38668332 38668382 -63204787 + LTR38B LTR ERV1 555 602 -8 227 287 11 75 chr13 38668519 38668613 -63204556 + MLT1J1 LTR MaLR 5 92 -354 1125 218 52 55 chr13 38669174 38669500 -63203669 - MLT1B LTR MaLR 0 390 66 38127 101 13 5 chr13 38669601 38674916 -63198253 - HERVL-A1 LTR ERVL -90 5564 207 2826 94 6 15 chr13 38674916 38675319 -63197850 - MLT2A1 LTR ERVL -37 517 1 28 48 0 0 chr13 38675681 38675723 -63197446 + AT_rich Low_complexity Low_complexity 1 42 0 279 340 102 16 chr13 38675862 38676353 -63196816 - L1M4 LINE L1 -1214 4932 4400 1859 153 7 0 chr13 38676382 38676669 -63196500 - AluSx SINE Alu 0 312 24 464 148 9 37 chr13 38676819 38676927 -63196242 - L1 LINE L1 -926 5220 5116 24 0 0 0 chr13 38677741 38677765 -63195404 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 38678093 38678115 -63195054 + AT_rich Low_complexity Low_complexity 1 22 0 34 79 0 0 chr13 38678963 38679039 -63194130 + AT_rich Low_complexity Low_complexity 1 76 0 222 236 10 18 chr13 38679931 38679994 -63193175 + GA-rich Low_complexity Low_complexity 4 49 0 24 77 0 0 chr13 38680792 38680844 -63192325 + AT_rich Low_complexity Low_complexity 1 52 0 184 345 92 17 chr13 38680954 38681073 -63192096 + MIR SINE MIR 76 203 -59 318 330 80 24 chr13 38681432 38681644 -63191525 + L2 LINE L2 3081 3304 -9 25 83 0 0 chr13 38682697 38682757 -63190412 + AT_rich Low_complexity Low_complexity 1 60 0 686 169 0 52 chr13 38682877 38683013 -63190156 - MLT1B LTR MaLR -261 129 1 239 298 131 0 chr13 38683183 38683267 -63189902 + MER5B DNA MER1_type 4 98 -80 485 301 45 49 chr13 38683666 38683932 -63189237 + MLT1J LTR MaLR 2 266 -245 22 35 0 0 chr13 38684253 38684282 -63188887 + AT_rich Low_complexity Low_complexity 1 29 0 221 360 47 59 chr13 38685272 38685452 -63187717 - MIR SINE MIR 0 262 84 1967 160 8 39 chr13 38685452 38685839 -63187330 - THE1C LTR MaLR 0 375 1 221 360 47 59 chr13 38685839 38685911 -63187258 - MIR SINE MIR -178 84 13 967 226 5 18 chr13 38686061 38686278 -63186891 + MER58A DNA MER1_type 1 214 -10 696 264 61 4 chr13 38686346 38686592 -63186577 + MER69 DNA AcHobo 2102 2361 -165 3986 158 23 18 chr13 38688337 38688403 -63184766 + MER50 LTR ERV1 1 65 -669 1801 203 32 7 chr13 38688403 38688842 -63184327 - LTR7 LTR ERV1 0 450 1 3986 158 23 18 chr13 38688842 38689483 -63183686 + MER50 LTR ERV1 65 711 -23 26 50 0 0 chr13 38689562 38689602 -63183567 + AT_rich Low_complexity Low_complexity 1 40 0 3411 153 58 16 chr13 38689602 38690271 -63182898 - LTR34 LTR ERV1 -2 697 1 23 0 0 0 chr13 38690468 38690491 -63182678 + AT_rich Low_complexity Low_complexity 1 23 0 2194 167 98 43 chr13 38690706 38691270 -63181899 - LTR49 LTR ERV1 0 595 1 3851 168 25 17 chr13 38691961 38692676 -63180493 - MER72 LTR ERV1 0 722 2 225 333 58 0 chr13 38692765 38692852 -63180317 + L2 LINE L2 3208 3299 -14 33 25 0 0 chr13 38692875 38692915 -63180254 + AT_rich Low_complexity Low_complexity 1 40 0 2040 149 0 0 chr13 38692957 38693253 -63179916 + AluSq SINE Alu 1 296 -17 269 309 0 37 chr13 38693255 38693336 -63179833 + MIR SINE MIR 21 98 -164 281 254 34 51 chr13 38693549 38693667 -63179502 - MLT1I LTR MaLR -208 201 86 21 0 0 0 chr13 38694319 38694340 -63178829 + AT_rich Low_complexity Low_complexity 1 21 0 214 182 0 0 chr13 38695193 38695237 -63177932 + A-rich Low_complexity Low_complexity 3 46 0 4435 170 58 16 chr13 38695393 38696279 -63176890 - MER49 LTR ERV1 0 923 1 3078 133 10 2 chr13 38696688 38697198 -63175971 + L1MA4 LINE L1 5783 6296 -4 234 352 152 26 chr13 38697474 38697738 -63175431 + L2 LINE L2 846 1142 -2172 260 363 76 51 chr13 38697826 38697946 -63175223 + L2 LINE L2 1479 1594 -1720 2285 118 0 3 chr13 38697946 38698260 -63174909 - AluSp SINE Alu 0 313 1 260 363 76 51 chr13 38698260 38698574 -63174595 + L2 LINE L2 1594 1924 -1390 371 286 10 69 chr13 38698612 38698815 -63174354 + L2 LINE L2 3099 3289 -24 824 341 73 64 chr13 38698903 38699970 -63173199 + L2 LINE L2 1997 3078 -194 1979 139 33 0 chr13 38700037 38700339 -63172830 - AluSx SINE Alu 0 312 1 187 296 28 120 chr13 38700405 38700513 -63172656 + L2 LINE L2 3170 3267 -5 181 311 0 33 chr13 38701472 38701533 -63171636 - L3 LINE CR1 -70 1507 1449 26 64 0 0 chr13 38701543 38701590 -63171579 + AT_rich Low_complexity Low_complexity 1 47 0 443 289 105 87 chr13 38702459 38702839 -63170330 + HAL1 LINE L1 757 1143 -1364 32 26 0 0 chr13 38702845 38702884 -63170285 + AT_rich Low_complexity Low_complexity 1 39 0 2059 84 9 56 chr13 38703246 38703569 -63169600 + AluY SINE Alu 4 311 0 915 245 98 27 chr13 38704261 38704574 -63168595 - MLT1C LTR MaLR -26 441 128 2266 97 7 3 chr13 38704574 38704884 -63168285 + AluSx SINE Alu 2 312 0 915 245 98 27 chr13 38704884 38704990 -63168179 - MLT1C LTR MaLR -339 128 31 27 0 0 0 chr13 38705047 38705074 -63168095 + AT_rich Low_complexity Low_complexity 1 27 0 242 225 11 56 chr13 38705239 38705328 -63167841 + Charlie8 DNA MER1_type 712 796 -1621 31 0 0 0 chr13 38706458 38706489 -63166680 + AT_rich Low_complexity Low_complexity 1 31 0 300 300 56 22 chr13 38706835 38707015 -63166154 + L1M4 LINE L1 4974 5159 -987 1107 185 5 40 chr13 38707056 38707278 -63165891 - AluJo SINE Alu -98 214 1 180 0 0 0 chr13 38708158 38708178 -63164991 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr13 38708294 38708318 -63164851 + AT_rich Low_complexity Low_complexity 1 24 0 226 258 156 0 chr13 38708956 38709043 -63164126 + MIR SINE MIR 35 135 -73 28 48 0 0 chr13 38709182 38709224 -63163945 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr13 38709627 38709655 -63163514 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 38710718 38710758 -63162411 + AT_rich Low_complexity Low_complexity 1 40 0 366 42 0 0 chr13 38710909 38710957 -63162212 + AluY SINE Alu 1 48 -253 1082 280 25 12 chr13 38711244 38711565 -63161604 - L1MDb LINE L1 -6077 332 8 24 0 0 0 chr13 38711626 38711650 -63161519 + AT_rich Low_complexity Low_complexity 1 24 0 978 285 29 31 chr13 38712279 38712731 -63160438 + Charlie4a DNA MER1_type 40 490 -18 2080 126 3 7 chr13 38712784 38713085 -63160084 + AluSx SINE Alu 1 300 -12 824 307 54 37 chr13 38713089 38713574 -63159595 + HAL1 LINE L1 69 561 -1946 660 307 137 24 chr13 38714210 38714634 -63158535 + HAL1 LINE L1 615 1086 -1421 254 357 111 52 chr13 38714758 38715078 -63158091 - L3 LINE CR1 -185 1392 1033 552 255 107 20 chr13 38715078 38715274 -63157895 - MER58C DNA MER1_type -2 213 1 254 357 111 52 chr13 38715274 38715432 -63157737 - L3 LINE CR1 -544 1033 886 406 313 69 6 chr13 38715527 38715543 -63157626 - MER58B DNA MER1_type -2079 341 327 222 91 0 0 chr13 38715543 38715576 -63157593 + (TTA)n Simple_repeat Simple_repeat 1 33 0 406 313 69 6 chr13 38715576 38715719 -63157450 - MER58B DNA MER1_type -2093 327 172 23 0 0 0 chr13 38716262 38716285 -63156884 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 38716681 38716702 -63156467 + AT_rich Low_complexity Low_complexity 1 21 0 378 215 19 37 chr13 38716768 38716875 -63156294 - MER3 DNA MER1_type -14 195 91 21 36 0 0 chr13 38716899 38716927 -63156242 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr13 38717188 38717225 -63155944 + AT_rich Low_complexity Low_complexity 1 37 0 276 292 193 19 chr13 38717334 38717495 -63155674 + MER5A DNA MER1_type 1 189 0 902 239 67 122 chr13 38717980 38718260 -63154909 - MER67D LTR ERV1 -8 506 267 2027 133 89 9 chr13 38718260 38718597 -63154572 + THE1B LTR MaLR 1 364 0 902 239 67 122 chr13 38718597 38718851 -63154318 - MER67D LTR ERV1 -247 267 1 240 394 49 0 chr13 38719024 38719166 -63154003 - MIR3 SINE MIR -14 194 46 212 250 0 0 chr13 38720568 38720616 -63152553 + (CATA)n Simple_repeat Simple_repeat 3 50 0 22 35 0 0 chr13 38721594 38721623 -63151546 + AT_rich Low_complexity Low_complexity 1 29 0 1290 147 79 7 chr13 38722438 38722717 -63150452 - L1MA8 LINE L1 -1 6290 5992 1820 272 68 79 chr13 38722967 38725030 -63148139 + L1M2 LINE L1 1 1756 -5453 3557 58 0 2 chr13 38725037 38725486 -63147683 - LTR7 LTR ERV1 -2 448 1 2547 76 45 13 chr13 38725486 38725866 -63147303 - HERVH LTR ERV1 0 7713 7322 1327 121 20 0 chr13 38725866 38726065 -63147104 - HERVH LTR ERV1 -1896 5817 5615 4395 138 1 1 chr13 38726095 38726757 -63146412 - HERVH LTR ERV1 -2564 5149 4488 3407 112 4 2 chr13 38726759 38727260 -63145909 - HERVH LTR ERV1 -3720 3993 3492 1005 107 7 0 chr13 38727250 38727400 -63145769 - HERVH LTR ERV1 -4423 3290 3140 * 19832 99 7 34 chr13 38727379 38730456 -63142713 - HERVH LTR ERV1 -4718 2995 1 3694 40 0 2 chr13 38730458 38730907 -63142262 - LTR7 LTR ERV1 -2 448 1 1120 186 86 0 chr13 38730910 38731131 -63142038 + L1M2 LINE L1 1773 2012 -5197 1318 199 32 34 chr13 38731137 38731495 -63141674 - MER67C LTR ERV1 -249 265 1 21 0 0 0 chr13 38732025 38732046 -63141123 + AT_rich Low_complexity Low_complexity 1 21 0 327 146 0 0 chr13 38732069 38732124 -63141045 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 2118 121 21 0 chr13 38732175 38732465 -63140704 + AluSg SINE Alu 1 296 -14 1170 186 12 12 chr13 38732729 38732987 -63140182 - L1MA4A LINE L1 -362 5941 5684 1986 75 14 4 chr13 38732990 38733269 -63139900 + MER41B LTR ERV1 1 282 -353 219 36 0 0 chr13 38733409 38733437 -63139732 + (GA)n Simple_repeat Simple_repeat 2 29 0 1518 190 39 3 chr13 38734440 38734724 -63138445 - AluSx SINE Alu -18 294 1 27 68 0 34 chr13 38735457 38735518 -63137651 + AT_rich Low_complexity Low_complexity 1 60 -25 2449 71 0 0 chr13 38735518 38735828 -63137341 - AluY SINE Alu -1 310 1 27 68 0 34 chr13 38735828 38735854 -63137315 + AT_rich Low_complexity Low_complexity 60 85 0 273 288 0 0 chr13 38735954 38736013 -63137156 - MIR SINE MIR -190 72 14 303 291 10 118 chr13 38736148 38736351 -63136818 - MIR SINE MIR -71 191 11 31 26 0 0 chr13 38736797 38736835 -63136334 + AT_rich Low_complexity Low_complexity 1 38 0 27 68 0 34 chr13 38737750 38737811 -63135358 + AT_rich Low_complexity Low_complexity 1 60 -25 2449 71 0 0 chr13 38737811 38738121 -63135048 - AluY SINE Alu -1 310 1 27 68 0 34 chr13 38738121 38738147 -63135022 + AT_rich Low_complexity Low_complexity 60 85 0 273 288 0 0 chr13 38738247 38738306 -63134863 - MIR SINE MIR -190 72 14 303 291 10 118 chr13 38738441 38738644 -63134525 - MIR SINE MIR -71 191 11 31 26 0 0 chr13 38739089 38739127 -63134042 + AT_rich Low_complexity Low_complexity 1 38 0 2390 59 0 10 chr13 38739954 38740260 -63132909 + AluY SINE Alu 1 303 -8 25 31 0 0 chr13 38740315 38740347 -63132822 + AT_rich Low_complexity Low_complexity 1 32 0 504 282 239 31 chr13 38740363 38740937 -63132232 + L1M4 LINE L1 3067 3759 -2387 2094 139 24 3 chr13 38740938 38741277 -63131892 + L1PA16 LINE L1 5592 5937 -229 1149 264 164 78 chr13 38741285 38742288 -63130881 + MER52A LTR ERV1 666 1755 0 983 198 75 0 chr13 38742290 38742502 -63130667 + L1PA16 LINE L1 5937 6164 -2 340 311 205 15 chr13 38742508 38742839 -63130330 + L1M4 LINE L1 3778 4171 -1975 21 0 0 0 chr13 38742844 38742865 -63130304 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 38742989 38743018 -63130151 + AT_rich Low_complexity Low_complexity 1 29 0 200 320 40 0 chr13 38743686 38743736 -63129433 + L3b LINE CR1 1520 1571 -12 25 0 0 0 chr13 38744286 38744311 -63128858 + AT_rich Low_complexity Low_complexity 1 25 0 472 284 158 5 chr13 38744327 38744517 -63128652 + MER20 DNA MER1_type 1 219 0 208 83 42 21 chr13 38744968 38745016 -63128153 + T-rich Low_complexity Low_complexity 5 53 0 1910 148 3 3 chr13 38745216 38745523 -63127646 + AluSq SINE Alu 1 307 0 245 203 34 0 chr13 38746048 38746107 -63127062 - MLT1A1 LTR MaLR -5 360 300 313 132 59 44 chr13 38746579 38746647 -63126522 + MER67D LTR ERV1 445 513 -1 1680 217 14 28 chr13 38746676 38747040 -63126129 - MLT1A1 LTR MaLR -2 363 5 31 68 0 0 chr13 38748401 38748460 -63124709 + AT_rich Low_complexity Low_complexity 1 59 0 246 282 60 23 chr13 38749877 38749969 -63123200 - MIR SINE MIR -63 145 59 23 54 0 0 chr13 38750426 38750463 -63122706 + AT_rich Low_complexity Low_complexity 1 37 0 3862 175 64 25 chr13 38751562 38752389 -63120780 + MER6 DNA MER2_type 4 862 -3 25 0 0 0 chr13 38752441 38752466 -63120703 + AT_rich Low_complexity Low_complexity 1 25 0 244 304 154 61 chr13 38754299 38754513 -63118656 - MIR SINE MIR -1 261 28 508 172 8 8 chr13 38754814 38754936 -63118233 + (TA)n Simple_repeat Simple_repeat 1 122 0 677 289 60 54 chr13 38756104 38756643 -63116526 - MLT1G3 LTR MaLR 0 585 14 24 32 0 0 chr13 38757285 38757316 -63115853 + AT_rich Low_complexity Low_complexity 1 31 0 348 305 0 8 chr13 38757672 38757803 -63115366 - MLT1-int LTR MaLR -814 557 428 14143 151 15 15 chr13 38758207 38759474 -63113695 + Tigger1 DNA MER2_type 1 1267 -1151 2057 136 0 0 chr13 38759474 38759784 -63113385 - L1PA16 LINE L1 -9 6157 5848 14143 151 15 15 chr13 38759784 38759894 -63113275 + Tigger1 DNA MER2_type 1267 1376 -1042 4140 166 72 49 chr13 38759894 38760941 -63112228 - MER11C LTR ERVK 0 1071 1 14143 151 15 15 chr13 38760941 38761981 -63111188 + Tigger1 DNA MER2_type 1376 2418 0 553 285 8 73 chr13 38762136 38762382 -63110787 - MLT1G1 LTR MaLR -361 234 5 248 232 0 14 chr13 38765228 38765297 -63107872 + MLT1D LTR MaLR 180 247 -258 653 247 1 13 chr13 38765313 38765479 -63107690 + MLT1D LTR MaLR 357 505 0 5685 169 9 18 chr13 38765585 38766257 -63106912 - L1PA15 LINE L1 -31 6134 5458 1905 149 3 10 chr13 38766257 38766566 -63106603 - AluSg SINE Alu -3 307 1 5685 169 9 18 chr13 38766566 38766843 -63106326 - L1PA15 LINE L1 -707 5458 5180 1247 139 65 0 chr13 38766843 38767058 -63106111 - MER30 DNA MER1_type 0 230 2 5685 169 9 18 chr13 38767058 38768038 -63105131 - L1PA15 LINE L1 -985 5180 4228 22 0 0 0 chr13 38768204 38768226 -63104943 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr13 38769417 38769439 -63103730 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2219 69 7 0 chr13 38769441 38769717 -63103452 - AluY SINE Alu -33 278 1 1548 204 22 18 chr13 38769969 38770414 -63102755 - LTR7 LTR ERV1 -2 448 2 1047 252 3 17 chr13 38770466 38770729 -63102440 + MLT2D LTR ERVL 116 469 -46 22 56 0 0 chr13 38770888 38770924 -63102245 + AT_rich Low_complexity Low_complexity 1 36 0 861 237 33 14 chr13 38771060 38771275 -63101894 + LTR1B LTR ERV1 1 219 -607 1940 141 22 150 chr13 38771280 38772007 -63101162 - MER4D LTR ERV1 -260 631 1 1313 237 44 66 chr13 38772034 38772531 -63100638 + MLT1D LTR MaLR 20 505 0 250 363 12 50 chr13 38773079 38773239 -63099930 - L2 LINE L2 0 3313 3160 2182 246 31 12 chr13 38773507 38774079 -63099090 + Charlie8 DNA MER1_type 1522 2104 -313 22 70 0 0 chr13 38774325 38774368 -63098801 + AT_rich Low_complexity Low_complexity 1 43 0 1242 220 18 32 chr13 38774383 38774520 -63098649 - AluJb SINE Alu 0 321 184 1916 153 82 15 chr13 38774520 38774861 -63098308 + THE1B LTR MaLR 1 364 0 1242 220 18 32 chr13 38774861 38775043 -63098126 - AluJb SINE Alu -137 184 6 238 293 0 0 chr13 38775050 38775125 -63098044 + Charlie8 DNA MER1_type 2341 2415 -2 14478 187 28 35 chr13 38775771 38776114 -63097055 + L1M1 LINE L1 1 345 -7220 425 102 0 0 chr13 38776114 38776173 -63096996 + AluJ/FLAM SINE Alu 1 59 -253 14478 187 28 35 chr13 38776173 38778626 -63094543 + L1M1 LINE L1 345 2837 -4728 216 0 0 0 chr13 38778626 38778650 -63094519 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 14478 187 28 35 chr13 38778650 38778695 -63094474 + L1M1 LINE L1 2837 2881 -4684 463 144 56 0 chr13 38778724 38778814 -63094355 + L1MA1 LINE L1 6206 6300 -2 1761 301 57 21 chr13 38779410 38780243 -63092926 - L1MC4 LINE L1 -137 7905 6867 2030 126 0 17 chr13 38780243 38780545 -63092624 - AluSx SINE Alu -15 297 1 1761 301 57 21 chr13 38780545 38780878 -63092291 - L1MC4 LINE L1 -1175 6867 6548 514 307 74 20 chr13 38781400 38781644 -63091525 + MIR SINE MIR 6 262 0 22 0 0 0 chr13 38781824 38781846 -63091323 + AT_rich Low_complexity Low_complexity 1 22 0 264 316 86 0 chr13 38783312 38783429 -63089740 - L2 LINE L2 -6 3307 3181 224 310 35 11 chr13 38783414 38783501 -63089668 + MIR SINE MIR 76 164 -98 * 891 53 0 0 chr13 38784100 38784213 -63088956 + (TTC)n Simple_repeat Simple_repeat 2 114 0 467 239 17 62 chr13 38784427 38784603 -63088566 - MLT1B LTR MaLR -217 173 6 239 298 131 0 chr13 38784778 38784862 -63088307 + MER5B DNA MER1_type 4 98 -80 502 297 45 49 chr13 38785261 38785527 -63087642 + MLT1J LTR MaLR 2 266 -245 22 35 0 0 chr13 38785848 38785877 -63087292 + AT_rich Low_complexity Low_complexity 1 29 0 1933 170 8 35 chr13 38787057 38787428 -63085741 - THE1C LTR MaLR 0 375 15 455 283 0 23 chr13 38787692 38787869 -63085300 + MER58A DNA MER1_type 27 199 -25 7024 95 12 8 chr13 38788012 38789068 -63084101 - L1P LINE L1 -2336 3810 2750 252 243 27 14 chr13 38789064 38789138 -63084031 - L1MCc LINE L1 -6331 92 18 * 789 206 25 5 chr13 38789758 38789962 -63083207 - L1MA4 LINE L1 0 6300 6093 195 175 50 0 chr13 38789987 38790027 -63083142 + L2 LINE L2 3272 3313 0 2086 197 21 88 chr13 38790194 38790773 -63082396 - MLT2B3 LTR ERVL 0 554 15 1894 79 9 0 chr13 38790854 38791281 -63081888 + L1PA8 LINE L1 5670 6170 -2 988 195 6 0 chr13 38791393 38791562 -63081607 - AluSx SINE Alu -140 172 3 200 325 35 26 chr13 38791952 38792066 -63081103 - MIR SINE MIR -32 230 116 320 330 200 5 chr13 38792231 38792431 -63080738 + MIR SINE MIR 12 250 -12 23 33 0 0 chr13 38792750 38792780 -63080389 + AT_rich Low_complexity Low_complexity 1 30 0 245 212 0 15 chr13 38793737 38793803 -63079366 + (TA)n Simple_repeat Simple_repeat 2 66 0 390 267 0 0 chr13 38793803 38793893 -63079276 - L1MC4 LINE L1 -1339 6703 6614 4582 163 16 32 chr13 38796236 38796904 -63076265 + L1PB4 LINE L1 5198 5875 -281 243 0 0 0 chr13 38796904 38796931 -63076238 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1830 139 0 18 chr13 38796937 38797218 -63075951 - AluSx SINE Alu -36 276 1 4582 163 16 32 chr13 38797218 38797512 -63075657 + L1PB4 LINE L1 5880 6153 -3 198 0 0 0 chr13 38797840 38797862 -63075307 + (A)n Simple_repeat Simple_repeat 1 22 0 643 285 29 84 chr13 38798001 38798498 -63074671 + L1ME LINE L1 278 749 -5321 1364 286 34 79 chr13 38798554 38799485 -63073684 + L1M4 LINE L1 3837 4733 -1413 775 275 62 47 chr13 38800717 38801165 -63072004 - L1MA7 LINE L1 -64 6227 5773 6849 62 8 0 chr13 38801266 38802687 -63070482 + L1PA7 LINE L1 4722 6149 -5 836 298 19 28 chr13 38802722 38803044 -63070125 + L1MCc LINE L1 99 417 -6006 41 72 0 0 chr13 38803095 38803178 -63069991 + AT_rich Low_complexity Low_complexity 1 83 0 40 79 0 0 chr13 38803306 38803395 -63069774 + AT_rich Low_complexity Low_complexity 1 89 0 351 206 43 22 chr13 38804143 38804235 -63068934 + L1MB7 LINE L1 6080 6173 -11 386 275 285 0 chr13 38804382 38804575 -63068594 + MIR SINE MIR 15 262 0 1759 223 69 13 chr13 38804616 38805168 -63068001 - L1MD3 LINE L1 -237 7758 6975 761 260 11 6 chr13 38805168 38805349 -63067820 + MLT1D LTR MaLR 1 182 -323 1145 240 31 3 chr13 38805401 38805688 -63067481 - L1ME1 LINE L1 -206 5960 5666 1410 243 68 138 chr13 38806029 38806614 -63066555 + MLT1E LTR MaLR 45 591 -2 253 268 278 0 chr13 38806624 38806721 -63066448 + MER91C DNA MER1_type 12 135 -5 321 338 40 27 chr13 38806886 38807034 -63066135 - MIR3 SINE MIR -31 177 60 625 245 14 0 chr13 38807335 38807482 -63065687 + LTR40a LTR ERVL 3 151 -368 1346 244 89 36 chr13 38807596 38808125 -63065044 - L1ME1 LINE L1 -259 5907 5351 234 186 0 0 chr13 38808159 38808202 -63064967 + L1 LINE L1 4172 4214 -1932 21 36 0 0 chr13 38808257 38808285 -63064884 + AT_rich Low_complexity Low_complexity 1 28 0 8958 204 30 26 chr13 38808289 38810727 -63062442 - L1P5 LINE L1 -667 5484 3047 2044 233 26 4 chr13 38810737 38811277 -63061892 - L1M2 LINE L1 -4029 2820 2269 1327 123 199 36 chr13 38813547 38813848 -63059321 - MSTA LTR MaLR 0 428 79 595 235 48 119 chr13 38814106 38814527 -63058642 - L1ME1 LINE L1 -1906 4240 3850 702 244 33 58 chr13 38814527 38814819 -63058350 + L1MCa LINE L1 1799 2189 -4400 3649 229 57 52 chr13 38814841 38816014 -63057155 + L1MC3 LINE L1 6567 7745 -40 237 193 11 23 chr13 38817054 38817142 -63056027 + CT-rich Low_complexity Low_complexity 1 87 0 21 82 0 0 chr13 38817199 38817248 -63055921 + AT_rich Low_complexity Low_complexity 1 49 0 277 317 67 8 chr13 38817673 38817793 -63055376 - L2 LINE L2 0 3313 3187 1691 128 92 14 chr13 38819697 38819979 -63053190 - AluSx SINE Alu -8 304 1 2908 236 83 48 chr13 38821358 38822517 -63050652 + L1MCa LINE L1 9 1180 -4865 636 320 51 27 chr13 38822945 38823201 -63049968 - MIR SINE MIR 0 262 1 637 119 20 0 chr13 38823373 38823474 -63049695 - AluSg/x SINE Alu -13 297 195 25 0 0 0 chr13 38824702 38824727 -63048442 + AT_rich Low_complexity Low_complexity 1 25 0 1393 244 121 26 chr13 38825813 38826276 -63046893 + LTR40a LTR ERVL 1 507 -12 189 74 0 0 chr13 38827857 38827884 -63045285 + (CA)n Simple_repeat Simple_repeat 2 28 0 1373 275 19 123 chr13 38879484 38880383 -62992786 + MSTC-int LTR MaLR 259 1063 -308 1612 59 10 0 chr13 38880383 38880586 -62992583 - AluY SINE Alu -4 307 103 243 160 32 0 chr13 38880689 38880783 -62992386 + (TA)n Simple_repeat Simple_repeat 1 97 0 884 150 69 17 chr13 38880784 38880957 -62992212 + Tigger1 DNA MER2_type 2236 2417 -1 631 293 55 37 chr13 38881027 38881409 -62991760 - MER69 DNA AcHobo -251 2275 1887 180 0 0 0 chr13 38881699 38881719 -62991450 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1370 197 56 3 chr13 38881739 38882023 -62991146 - AluJo SINE Alu -13 299 1 341 215 0 0 chr13 38882304 38882369 -62990800 - MER69 DNA AcHobo -2457 69 5 21 36 0 0 chr13 38882405 38882433 -62990736 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 38882497 38882527 -62990642 + AT_rich Low_complexity Low_complexity 1 30 0 827 160 0 26 chr13 38882734 38882890 -62990279 + AluSg/x SINE Alu 159 310 0 201 121 0 0 chr13 38882890 38882923 -62990246 + (TA)n Simple_repeat Simple_repeat 1 33 0 264 132 57 19 chr13 38883129 38883235 -62989934 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 25 90 0 0 chr13 38883388 38883455 -62989714 + AT_rich Low_complexity Low_complexity 1 67 0 29 60 0 0 chr13 38883944 38883994 -62989175 + AT_rich Low_complexity Low_complexity 1 50 0 640 276 97 17 chr13 38885092 38885443 -62987726 + L1M4 LINE L1 4899 5277 -869 349 98 0 0 chr13 38885444 38885495 -62987674 - AluSc SINE Alu -4 295 245 8891 152 65 12 chr13 38885607 38886294 -62986875 - Tigger1 DNA MER2_type -187 2231 1582 2076 180 7 53 chr13 38886294 38886743 -62986426 + MSTC LTR MaLR 1 428 0 8891 152 65 12 chr13 38886743 38887664 -62985505 - Tigger1 DNA MER2_type -836 1582 538 1226 200 105 24 chr13 38887666 38887961 -62985208 - Tigger1 DNA MER2_type -2099 319 1 219 36 0 0 chr13 38888356 38888384 -62984785 + (A)n Simple_repeat Simple_repeat 1 28 0 1178 298 129 11 chr13 38888776 38888920 -62984249 - L1MEc LINE L1 -2291 3924 3798 1408 229 26 7 chr13 38888920 38889226 -62983943 - AluJo SINE Alu 0 312 1 1178 298 129 11 chr13 38889226 38889967 -62983202 - L1MEc LINE L1 -2417 3798 2935 934 291 63 15 chr13 38889965 38890564 -62982605 - L1MEc LINE L1 -3616 2599 2019 * 331 311 44 0 chr13 38890977 38891067 -62982102 - AluJ/FLAM SINE Alu -207 95 2 238 267 0 0 chr13 38891076 38891136 -62982033 - L1 LINE L1 -2471 3675 3616 217 156 0 22 chr13 38891263 38891308 -62981861 + T-rich Low_complexity Low_complexity 5 48 0 21 0 0 0 chr13 38891827 38891848 -62981321 + AT_rich Low_complexity Low_complexity 1 21 0 2115 105 0 7 chr13 38891848 38892174 -62980995 + AluSp SINE Alu 1 324 0 639 205 18 0 chr13 38892174 38892312 -62980857 - L1PB4 LINE L1 -8 6158 6016 183 234 43 21 chr13 38892545 38892592 -62980577 + MER5A DNA MER1_type 122 169 -20 405 0 0 0 chr13 38893024 38893069 -62980100 + (TG)n Simple_repeat Simple_repeat 1 45 0 603 333 12 4 chr13 38893539 38893788 -62979381 - L1ME LINE L1 -342 5779 5529 211 327 71 9 chr13 38894343 38894456 -62978713 + L2 LINE L2 3153 3272 0 839 101 0 0 chr13 38895178 38895297 -62977872 - AluJb SINE Alu -189 123 5 731 116 93 16 chr13 38896586 38896715 -62976454 + LTR1 LTR ERV1 1 139 -646 51 83 0 0 chr13 38896721 38896842 -62976327 + AT_rich Low_complexity Low_complexity 1 121 0 1853 262 60 49 chr13 38897024 38897389 -62975780 - L1ME1 LINE L1 -5 6161 5802 264 30 0 0 chr13 38897389 38897422 -62975747 + (TC)n Simple_repeat Simple_repeat 2 34 0 1853 262 60 49 chr13 38897422 38898787 -62974382 - L1ME1 LINE L1 -364 5802 4419 340 311 82 7 chr13 38898928 38899063 -62974106 - MIR SINE MIR 0 262 118 263 281 22 0 chr13 38899203 38899292 -62973877 - L1MC4 LINE L1 -1337 6705 6615 317 247 49 37 chr13 38899323 38899485 -62973684 + L1ME2 LINE L1 5101 5264 -882 1522 281 86 28 chr13 38899496 38899843 -62973326 + L1ME2 LINE L1 5354 5679 -485 1877 154 76 15 chr13 38899843 38900186 -62972983 - THE1B LTR MaLR 0 364 1 1522 281 86 28 chr13 38900186 38900595 -62972574 + L1ME2 LINE L1 5679 6154 -10 229 226 60 24 chr13 38901297 38901381 -62971788 + HAL1b LINE L1 973 1059 -289 26 30 0 0 chr13 38901625 38901658 -62971511 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr13 38901735 38901769 -62971400 + AT_rich Low_complexity Low_complexity 1 34 0 249 266 0 0 chr13 38902063 38902127 -62971042 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 788 196 21 0 chr13 38902902 38903045 -62970124 + MER61D LTR ERV1 338 483 -18 243 88 0 0 chr13 38903732 38903766 -62969403 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 276 379 91 16 chr13 38903865 38904118 -62969051 + L2 LINE L2 2996 3267 -5 5538 189 15 33 chr13 38904618 38905413 -62967756 - L1PB3 LINE L1 0 6154 5346 2235 104 0 28 chr13 38905413 38905730 -62967439 + AluSp SINE Alu 1 308 -5 5538 189 15 33 chr13 38905730 38907114 -62966055 - L1PB3 LINE L1 -808 5346 3990 936 253 12 44 chr13 38908039 38908379 -62964790 + L1MB5 LINE L1 4811 5139 -1007 1496 201 46 110 chr13 38908381 38908818 -62964351 + L1MB5 LINE L1 5221 5599 -575 1544 201 7 3 chr13 38908818 38909106 -62964063 + AluJb SINE Alu 1 289 -23 1496 201 46 110 chr13 38909106 38909355 -62963814 + L1MB5 LINE L1 5599 5862 -312 1217 255 25 3 chr13 38909353 38909714 -62963455 + L1M4 LINE L1 4191 4559 -1587 * 442 239 8 39 chr13 38909738 38909868 -62963301 + L1MB5 LINE L1 6049 6174 0 210 37 0 0 chr13 38910431 38910458 -62962711 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1525 248 48 3 chr13 38910513 38910844 -62962325 + MLT1A1 LTR MaLR 14 359 -6 203 0 37 0 chr13 38911086 38911113 -62962056 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 37 104 0 0 chr13 38911341 38911476 -62961693 + AT_rich Low_complexity Low_complexity 1 135 0 491 265 160 8 chr13 38912455 38912723 -62960446 - MER5C DNA MER1_type 0 324 16 715 246 115 35 chr13 38912810 38913140 -62960029 + L1MB7 LINE L1 2534 2909 -3237 1942 170 3 0 chr13 38913140 38913451 -62959718 + AluSx SINE Alu 1 312 0 715 246 115 35 chr13 38913451 38913555 -62959614 + L1MB7 LINE L1 2909 3003 -3143 1534 261 55 16 chr13 38913563 38913778 -62959391 + L1MB7 LINE L1 4686 4891 -1255 2092 165 5 19 chr13 38913778 38914147 -62959022 + THE1B LTR MaLR 1 364 0 1534 261 55 16 chr13 38914147 38914480 -62958689 + L1MB7 LINE L1 4891 5255 -891 875 204 59 50 chr13 38914538 38914758 -62958411 + Tigger2 DNA MER2_type 2496 2717 -1 365 143 0 0 chr13 38914759 38914815 -62958354 + MER3 DNA MER1_type 154 209 0 264 188 0 0 chr13 38914773 38914821 -62958348 - MER3 DNA MER1_type -120 89 42 * 1597 234 27 0 chr13 38915009 38915346 -62957823 - MLT1A1 LTR MaLR -7 358 13 282 207 21 147 chr13 38915417 38915594 -62957575 + MIR3 SINE MIR 33 192 -24 219 333 39 10 chr13 38917240 38917342 -62955827 - MIR SINE MIR -6 256 152 692 210 4 6 chr13 38917344 38917591 -62955578 - MLT1A1 LTR MaLR -2 363 61 330 303 17 50 chr13 38917744 38917863 -62955306 + MIR SINE MIR 33 147 -115 3684 208 35 9 chr13 38917863 38918703 -62954466 + L1MB7 LINE L1 5305 6165 -19 554 260 83 27 chr13 38918781 38919119 -62954050 + L1MC5 LINE L1 7506 7862 -99 25 51 0 0 chr13 38919848 38919887 -62953282 + AT_rich Low_complexity Low_complexity 1 39 0 207 114 0 0 chr13 38920333 38920368 -62952801 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 512 325 72 29 chr13 38920936 38921453 -62951716 + MLT1H1 LTR MaLR 1 555 0 431 312 40 15 chr13 38921802 38922001 -62951168 - LTR68 LTR ERV1 -300 440 237 21 0 0 0 chr13 38922406 38922427 -62950742 + AT_rich Low_complexity Low_complexity 1 21 0 388 148 16 0 chr13 38922433 38922494 -62950675 + AluS SINE Alu 1 62 -237 633 326 60 25 chr13 38922624 38922940 -62950229 + L1MB8 LINE L1 521 847 -6012 273 305 19 38 chr13 38923286 38923391 -62949778 + L1MB8 LINE L1 918 1020 -5835 1191 265 93 57 chr13 38923561 38924717 -62948452 + L1MB8 LINE L1 1205 2388 -4571 22 0 0 0 chr13 38924769 38924791 -62948378 + AT_rich Low_complexity Low_complexity 1 22 0 466 255 60 52 chr13 38925341 38925688 -62947481 + L1MB8 LINE L1 2911 3222 -3735 2024 265 97 16 chr13 38925701 38926053 -62947116 + L1MB8 LINE L1 3757 4079 -2878 306 0 0 0 chr13 38926053 38926087 -62947082 + (TG)n Simple_repeat Simple_repeat 2 35 0 2024 265 97 16 chr13 38926087 38926853 -62946316 + L1MB8 LINE L1 4079 4965 -1992 2070 213 51 25 chr13 38926856 38927406 -62945763 + L1MB8 LINE L1 6426 6989 0 27 29 0 0 chr13 38928175 38928209 -62944960 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr13 38929007 38929036 -62944133 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr13 38929188 38929237 -62943932 + AT_rich Low_complexity Low_complexity 1 49 0 183 114 0 0 chr13 38929599 38929634 -62943535 + (TC)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr13 38929713 38929737 -62943432 + AT_rich Low_complexity Low_complexity 1 24 0 2286 88 0 7 chr13 38930411 38930716 -62942453 - AluY SINE Alu -8 303 1 316 184 85 0 chr13 38931052 38931193 -62941976 + (TA)n Simple_repeat Simple_repeat 1 153 0 21 36 0 0 chr13 38932389 38932417 -62940752 + AT_rich Low_complexity Low_complexity 1 28 0 2891 247 77 50 chr13 38932417 38933448 -62939721 - HERVL74 LTR ERVL -2537 3148 2090 2716 230 45 15 chr13 38933584 38934232 -62938937 - HERVL74 LTR ERVL -3602 2083 1417 1488 230 34 48 chr13 38934310 38934784 -62938385 + MLT1C LTR MaLR 1 467 0 825 181 9 16 chr13 38934806 38934976 -62938193 - MLT1A1 LTR MaLR -43 424 153 422 241 62 31 chr13 38935100 38935262 -62937907 - HERVL74 LTR ERVL -2544 1012 846 2546 268 36 6 chr13 38935285 38935926 -62937243 - HERVL74 LTR ERVL -2883 673 14 592 187 12 90 chr13 38936076 38936242 -62936927 - MLT1A1 LTR MaLR -467 159 7 894 264 12 72 chr13 38936251 38936584 -62936585 - MLT1A1-int LTR MaLR 0 1371 1059 1053 87 12 25 chr13 38936588 38936749 -62936420 + AluY SINE Alu 1 159 -152 622 221 45 0 chr13 38936856 38937010 -62936159 - MLT1A1-int LTR MaLR -1210 161 1 292 234 0 13 chr13 38937235 38937312 -62935857 - L1MEd LINE L1 -5365 754 679 4181 157 91 42 chr13 38937394 38938247 -62934922 + MER4D LTR ERV1 1 895 -8 317 326 101 14 chr13 38938466 38938604 -62934565 - L1MEd LINE L1 -5954 165 16 1726 133 28 0 chr13 38939516 38939764 -62933405 + AluSq SINE Alu 44 298 -15 336 283 59 27 chr13 38939961 38940148 -62933021 - L1MC/D LINE L1 -2066 5742 5550 443 330 28 23 chr13 38940553 38940729 -62932440 - MIR SINE MIR -84 178 2 184 284 81 27 chr13 38940786 38940860 -62932309 - L2 LINE L2 -2671 643 566 2042 118 0 4 chr13 38940860 38941140 -62932029 + AluSq SINE Alu 3 281 -32 1176 180 15 0 chr13 38941956 38942162 -62931007 - Tigger5 DNA MER2_type -1 2322 2114 267 292 31 31 chr13 38942178 38942274 -62930895 - Tigger5 DNA MER2_type -2227 96 1 30 45 0 0 chr13 38942281 38942325 -62930844 + AT_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr13 38942518 38942554 -62930615 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr13 38942779 38942816 -62930353 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr13 38942948 38942981 -62930188 + AT_rich Low_complexity Low_complexity 1 33 0 2446 151 48 5 chr13 38943158 38943574 -62929595 + MER61C LTR ERV1 1 434 0 12509 163 18 108 chr13 38943877 38947136 -62926033 + L1P LINE L1 3 2968 -3178 889 244 62 124 chr13 38947236 38947866 -62925303 + L1ME2 LINE L1 5386 5976 -188 977 257 196 36 chr13 38948086 38948669 -62924500 + L1MC4 LINE L1 6418 7093 -949 1015 280 152 26 chr13 38948707 38949436 -62923733 + L1MC4 LINE L1 7213 8033 -9 246 201 14 29 chr13 38951562 38951642 -62921527 + A-rich Low_complexity Low_complexity 2 137 0 22 0 0 0 chr13 38951648 38951670 -62921499 + AT_rich Low_complexity Low_complexity 1 22 0 182 278 19 19 chr13 38951670 38951724 -62921445 + L2 LINE L2 3209 3262 -10 23 54 0 0 chr13 38951741 38951778 -62921391 + AT_rich Low_complexity Low_complexity 1 37 0 252 0 0 0 chr13 38951811 38951839 -62921330 + (TG)n Simple_repeat Simple_repeat 1 28 0 247 255 104 108 chr13 38952707 38952958 -62920211 + MLT1J LTR MaLR 62 311 -200 22 35 0 0 chr13 38952996 38953025 -62920144 + AT_rich Low_complexity Low_complexity 1 29 0 236 321 0 0 chr13 38953134 38953215 -62919954 - MLT1J LTR MaLR -25 486 406 777 102 25 0 chr13 38953821 38953939 -62919230 + L1P3 LINE L1 5647 5767 -405 856 115 18 12 chr13 38954012 38954177 -62918992 + GA-rich Low_complexity Low_complexity 2 167 0 480 115 21 21 chr13 38954193 38954289 -62918880 + GA-rich Low_complexity Low_complexity 1 96 0 24 0 0 0 chr13 38954436 38954460 -62918709 + AT_rich Low_complexity Low_complexity 1 24 0 417 284 40 34 chr13 38954877 38955025 -62918144 + MLT1L LTR MaLR 43 191 -424 701 229 34 34 chr13 38955565 38955770 -62917399 - MER3 DNA MER1_type -4 205 1 691 207 46 23 chr13 38955805 38955979 -62917190 + MER58A DNA MER1_type 47 224 0 201 274 42 95 chr13 38956754 38956849 -62916320 + MIR SINE MIR 9 98 -164 1119 140 9 5 chr13 38957294 38957502 -62915667 - L1M2 LINE L1 -571 5720 5508 256 326 0 0 chr13 38957511 38957600 -62915569 + MIR SINE MIR 164 252 -10 3187 193 23 51 chr13 38957772 38958561 -62914608 - L1MA10 LINE L1 -2 6332 5566 332 284 32 0 chr13 38958567 38958662 -62914507 - MER52A LTR ERV1 -3 1752 1655 32387 152 37 31 chr13 38958663 38958883 -62914286 - MER52-int LTR ERV1 -6 7085 6868 3131 102 25 0 chr13 38958883 38959325 -62913844 - MLT2A2 LTR ERVL 0 453 1 32387 152 37 31 chr13 38959325 38959842 -62913327 - MER52-int LTR ERV1 -223 6868 6356 1974 150 20 0 chr13 38959842 38960142 -62913027 + AluSg SINE Alu 3 308 -2 32387 152 37 31 chr13 38960142 38961778 -62911391 - MER52-int LTR ERV1 -735 6356 4732 2193 106 0 31 chr13 38961778 38962099 -62911070 - AluY SINE Alu 0 311 1 32387 152 37 31 chr13 38962099 38962661 -62910508 - MER52-int LTR ERV1 -2359 4732 4175 2255 135 0 6 chr13 38962661 38963016 -62910153 + THE1A LTR MaLR 3 355 0 10634 113 30 0 chr13 38963016 38964550 -62908619 + THE1A-int LTR MaLR 1 1580 0 2212 136 14 17 chr13 38964550 38964904 -62908265 + THE1A LTR MaLR 1 353 -2 32387 152 37 31 chr13 38964904 38965149 -62908020 - MER52-int LTR ERV1 -2916 4175 3933 1867 174 0 3 chr13 38965149 38965454 -62907715 - AluSx SINE Alu -3 309 6 32387 152 37 31 chr13 38965454 38968004 -62905165 - MER52-int LTR ERV1 -3158 3933 1313 837 141 34 102 chr13 38968019 38968196 -62904973 - MER52-int LTR ERV1 -5974 1117 953 * 6469 175 34 47 chr13 38968190 38968403 -62904766 - MER52-int LTR ERV1 -5789 1302 1088 2331 153 3 0 chr13 38968403 38968775 -62904394 - THE1C LTR MaLR -2 373 1 6469 175 34 47 chr13 38968775 38969868 -62903301 - MER52-int LTR ERV1 -6003 1088 30 635 282 54 76 chr13 38969873 38970688 -62902481 - MER52A LTR ERV1 0 1755 276 1263 319 65 42 chr13 38971208 38972372 -62900797 - HERVI LTR ERV1 -138 7647 3377 328 269 25 25 chr13 38972787 38972906 -62900263 - HERVI LTR ERV1 -1796 4853 4735 650 336 8 4 chr13 38973137 38973399 -62899770 - HERVI LTR ERV1 -2029 5756 5494 3484 123 48 26 chr13 38973399 38973978 -62899191 + LTR14B LTR ERVK 17 608 0 1770 327 37 41 chr13 38974008 38975360 -62897809 - HERVI LTR ERV1 -2316 5469 4124 2803 318 47 39 chr13 38975445 38978081 -62895088 - HERVI LTR ERV1 -3673 4112 1037 562 327 5 10 chr13 38978239 38978444 -62894725 - HERVI LTR ERV1 -6782 1003 800 328 278 69 14 chr13 38978787 38978931 -62894238 - HERVI LTR ERV1 -6282 367 216 700 261 6 9 chr13 38979611 38979765 -62893404 - MER52A LTR ERV1 -534 800 603 10226 254 72 33 chr13 38979766 38985516 -62887653 - L1M2 LINE L1 -745 5465 9 1153 204 26 0 chr13 38985645 38985871 -62887298 + L1MC/D LINE L1 5463 5694 -2091 231 310 35 9 chr13 38985867 38985980 -62887189 + L1ME LINE L1 5580 5695 -426 * 25 0 0 0 chr13 38986114 38986139 -62887030 + AT_rich Low_complexity Low_complexity 1 25 0 34 42 0 0 chr13 38986314 38986362 -62886807 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr13 38987607 38987642 -62885527 + AT_rich Low_complexity Low_complexity 1 35 0 36 40 0 0 chr13 38988308 38988358 -62884811 + AT_rich Low_complexity Low_complexity 1 50 0 411 348 80 5 chr13 38988755 38988942 -62884227 - LTR33A LTR ERVL -264 259 59 2500 197 49 8 chr13 38989134 38989641 -62883528 - MER67C LTR ERV1 0 710 183 1882 165 44 15 chr13 38989644 38989983 -62883186 - THE1B LTR MaLR 0 364 16 10893 114 10 2 chr13 38989991 38991557 -62881612 - THE1B-int LTR MaLR -1 1579 2 1749 170 69 20 chr13 38991558 38991905 -62881264 - THE1B LTR MaLR 0 364 1 329 263 0 18 chr13 38991905 38992019 -62881150 - MER67C LTR ERV1 -526 184 73 182 276 179 58 chr13 38993069 38993225 -62879944 + L2 LINE L2 1875 2049 -1265 315 286 143 25 chr13 38993367 38993486 -62879683 + MIR SINE MIR 11 143 -119 330 98 0 0 chr13 38994195 38994246 -62878923 + (CA)n Simple_repeat Simple_repeat 1 51 0 14798 115 19 4 chr13 38996550 38999617 -62873552 + L1PA8 LINE L1 3085 6172 0 34 72 0 0 chr13 39000301 39000370 -62872799 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr13 39000671 39000692 -62872477 + AT_rich Low_complexity Low_complexity 1 21 0 383 306 139 6 chr13 39001238 39001418 -62871751 + L1MC5 LINE L1 6639 6842 -1119 2978 269 23 20 chr13 39001427 39002460 -62870709 + L1M4 LINE L1 4103 5138 -1008 261 119 0 0 chr13 39002505 39002547 -62870622 + (CA)n Simple_repeat Simple_repeat 1 42 0 1503 139 16 0 chr13 39002575 39002826 -62870343 - HSMAR2 DNA Mariner -1 1301 1047 488 206 0 9 chr13 39002825 39002932 -62870237 + MSTB LTR MaLR 317 422 -4 * 1709 166 9 12 chr13 39002932 39003257 -62869912 - HSMAR2 DNA Mariner -878 424 101 573 274 0 14 chr13 39003252 39003398 -62869771 - MLT2B1 LTR ERVL -66 454 311 * 22 80 0 0 chr13 39003440 39003490 -62869679 + AT_rich Low_complexity Low_complexity 1 50 0 2519 266 105 25 chr13 39004090 39006513 -62866656 + L1MB2 LINE L1 803 3273 -3109 * 3025 209 52 12 chr13 39006512 39007304 -62865865 - L1PA16 LINE L1 -705 5460 4635 4279 153 10 3 chr13 39007304 39008028 -62865141 + L1PA16 LINE L1 5438 6166 0 1383 235 58 23 chr13 39008032 39008563 -62864606 + L1MB2 LINE L1 3268 3817 -2565 1613 237 67 78 chr13 39008579 39009131 -62864038 - MLT2B3 LTR ERVL -7 547 2 300 53 0 0 chr13 39009139 39009177 -62863992 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 247 239 0 0 chr13 39009188 39009234 -62863935 + L1MB2 LINE L1 3865 3910 -2472 265 351 179 3 chr13 39009236 39009589 -62863580 + L1PA12 LINE L1 1 415 -7166 632 193 35 14 chr13 39010314 39010424 -62862745 + L1PA12 LINE L1 2714 2829 -4745 1750 160 15 15 chr13 39010424 39010749 -62862420 + L1PA13 LINE L1 5832 6156 -7 632 193 35 14 chr13 39010749 39010783 -62862386 + L1PA12 LINE L1 2829 2861 -4713 * 4487 225 52 64 chr13 39010772 39012515 -62860654 + L1MB2 LINE L1 3918 5619 -788 2346 94 0 0 chr13 39012515 39012813 -62860356 + AluSq SINE Alu 1 298 -15 4487 225 52 64 chr13 39012813 39013478 -62859691 + L1MB2 LINE L1 5619 6291 -116 23 0 0 0 chr13 39013901 39013924 -62859245 + AT_rich Low_complexity Low_complexity 1 23 0 1629 65 0 0 chr13 39014078 39014278 -62858891 - AluY SINE Alu -13 298 99 338 228 50 50 chr13 39014612 39014713 -62858456 - MER94 DNA DNA -33 101 1 219 224 0 0 chr13 39014763 39014821 -62858348 + (TG)n Simple_repeat Simple_repeat 2 59 0 854 191 64 0 chr13 39014903 39015091 -62858078 + L1MA8 LINE L1 6075 6274 -17 3567 153 37 98 chr13 39015094 39015344 -62857825 + L1PB4 LINE L1 5347 5611 -545 532 95 0 0 chr13 39015344 39015418 -62857751 - MADE1 DNA Mariner 0 80 7 3567 153 37 98 chr13 39015418 39015949 -62857220 + L1PB4 LINE L1 5611 6149 -7 397 311 121 32 chr13 39017195 39017443 -62855726 + MLT1I LTR MaLR 2 271 -138 753 159 6 104 chr13 39017744 39017873 -62855296 + L1PA16 LINE L1 5994 6101 -65 1828 183 89 2 chr13 39017873 39018267 -62854902 + MSTA LTR MaLR 1 428 0 753 159 6 104 chr13 39018267 39018319 -62854850 + L1PA16 LINE L1 6101 6157 -9 281 335 37 43 chr13 39018362 39018523 -62854646 + L2 LINE L2 3152 3311 -2 2498 64 0 6 chr13 39019719 39020031 -62853138 + AluY SINE Alu 1 310 -1 445 314 101 49 chr13 39020169 39020456 -62852713 + L3 LINE CR1 562 863 -714 22 0 0 0 chr13 39020880 39020902 -62852267 + AT_rich Low_complexity Low_complexity 1 22 0 218 308 103 56 chr13 39020939 39021046 -62852123 - L2 LINE L2 -18 3295 3184 24 77 0 0 chr13 39021344 39021396 -62851773 + AT_rich Low_complexity Low_complexity 1 52 0 2020 224 121 40 chr13 39022019 39022645 -62850524 + L1MC3 LINE L1 6705 7381 -404 750 261 70 83 chr13 39022645 39023613 -62849556 + MER52A LTR ERV1 659 1755 0 1151 188 93 73 chr13 39023614 39023767 -62849402 + L1MC3 LINE L1 7380 7528 -257 2516 58 0 0 chr13 39023767 39024077 -62849092 + AluY SINE Alu 1 310 -1 1151 188 93 73 chr13 39024077 39024321 -62848848 + L1MC3 LINE L1 7528 7785 0 26 30 0 0 chr13 39024983 39025016 -62848153 + AT_rich Low_complexity Low_complexity 1 33 0 218 279 0 0 chr13 39025125 39025168 -62848001 - MIR SINE MIR -141 121 79 22 35 0 0 chr13 39025731 39025760 -62847409 + AT_rich Low_complexity Low_complexity 1 29 0 2341 138 55 26 chr13 39025760 39025914 -62847255 - L1MA3 LINE L1 0 6305 6157 299 25 25 0 chr13 39025914 39025954 -62847215 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1839 145 3 11 chr13 39025954 39026237 -62846932 - AluSx SINE Alu -28 284 4 2341 138 55 26 chr13 39026237 39026536 -62846633 - L1MA3 LINE L1 -147 6158 5838 23 0 0 0 chr13 39027947 39027970 -62845199 + AT_rich Low_complexity Low_complexity 1 23 0 213 94 0 0 chr13 39028236 39028268 -62844901 + (TA)n Simple_repeat Simple_repeat 1 32 0 2328 64 3 64 chr13 39028696 39029026 -62844143 - AluY SINE Alu 0 311 2 936 200 0 0 chr13 39029414 39029584 -62843585 - AluSg/x SINE Alu -6 306 137 2113 109 0 0 chr13 39029713 39030043 -62843126 + AluSx SINE Alu 1 330 0 23 33 0 0 chr13 39030043 39030073 -62843096 + AT_rich Low_complexity Low_complexity 1 30 0 223 269 11 11 chr13 39031614 39031707 -62841462 + (TA)n Simple_repeat Simple_repeat 1 93 0 309 284 154 35 chr13 39031786 39032124 -62841045 - L1M4 LINE L1 -2919 3227 2850 3803 214 66 15 chr13 39032257 39032690 -62840479 - L1 LINE L1 -1197 4949 4539 2324 87 0 3 chr13 39032690 39033000 -62840169 - AluY SINE Alu -2 309 1 3803 214 66 15 chr13 39033000 39033550 -62839619 - L1 LINE L1 -1607 4539 3916 4179 194 55 37 chr13 39033558 39033616 -62839553 + L1MA9 LINE L1 5256 5311 -1001 2091 92 4 7 chr13 39033616 39033925 -62839244 - AluY SINE Alu 0 308 1 4179 194 55 37 chr13 39033925 39034902 -62838267 + L1MA9 LINE L1 5311 6312 0 413 290 66 39 chr13 39035177 39035436 -62837733 - L1 LINE L1 -3734 2412 2147 655 225 0 0 chr13 39035849 39035991 -62837178 - L1MA3 LINE L1 0 6305 6164 4437 61 5 0 chr13 39036606 39037179 -62835990 - L1PA8 LINE L1 0 6172 5597 230 0 0 0 chr13 39037412 39037440 -62835729 + L1PA6 LINE L1 6118 6145 -9 23 0 0 0 chr13 39037754 39037777 -62835392 + AT_rich Low_complexity Low_complexity 1 23 0 427 134 61 0 chr13 39038431 39038513 -62834656 + L1PA13 LINE L1 6073 6159 -4 543 261 30 60 chr13 39038799 39039067 -62834102 + L1MA9 LINE L1 6015 6274 -38 21 57 0 0 chr13 39039329 39039364 -62833805 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 39039443 39039478 -62833691 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 39040098 39040126 -62833043 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 39041451 39041475 -62831694 + AT_rich Low_complexity Low_complexity 1 24 0 23 78 0 0 chr13 39041801 39041852 -62831317 + AT_rich Low_complexity Low_complexity 1 51 0 308 278 0 10 chr13 39042004 39042101 -62831068 - L1M4 LINE L1 -3727 2419 2324 30 45 0 0 chr13 39042266 39042310 -62830859 + AT_rich Low_complexity Low_complexity 1 44 0 27 92 0 0 chr13 39042376 39042452 -62830717 + AT_rich Low_complexity Low_complexity 1 76 0 1050 212 106 66 chr13 39042750 39043099 -62830070 + MLT1A1 LTR MaLR 1 363 -2 25 0 0 0 chr13 39043170 39043195 -62829974 + AT_rich Low_complexity Low_complexity 1 25 0 197 319 50 69 chr13 39043433 39043593 -62829576 - L3 LINE CR1 -10 1567 1411 26 0 0 0 chr13 39043775 39043801 -62829368 + AT_rich Low_complexity Low_complexity 1 26 0 5726 232 31 48 chr13 39046403 39047728 -62825441 + L1MC3 LINE L1 4568 5915 -231 1882 135 47 47 chr13 39047728 39048092 -62825077 - THE1B LTR MaLR 0 364 1 10010 128 29 4 chr13 39048092 39049633 -62823536 - THE1B-int LTR MaLR 0 1580 1 2149 123 47 33 chr13 39049633 39049992 -62823177 - THE1B LTR MaLR 0 364 1 5726 232 31 48 chr13 39049992 39050964 -62822205 + L1MC3 LINE L1 4415 5403 -743 3693 190 46 9 chr13 39051654 39052343 -62820826 + MER44D DNA MER2_type 9 595 -10 23 0 0 0 chr13 39052612 39052635 -62820534 + AT_rich Low_complexity Low_complexity 1 23 0 225 239 0 30 chr13 39052823 39052890 -62820279 + GA-rich Low_complexity Low_complexity 4 68 0 25 0 0 0 chr13 39053530 39053555 -62819614 + AT_rich Low_complexity Low_complexity 1 25 0 24 77 0 0 chr13 39054236 39054288 -62818881 + AT_rich Low_complexity Low_complexity 1 52 0 256 246 86 80 chr13 39054640 39054815 -62818354 - ORSL DNA AcHobo -1 274 99 549 44 0 0 chr13 39054826 39054894 -62818275 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1029 208 0 41 chr13 39054953 39055174 -62817995 - AluJo SINE Alu -100 212 1 313 171 0 73 chr13 39055176 39055258 -62817911 - ORSL DNA AcHobo -186 89 14 25 31 0 0 chr13 39055817 39055849 -62817320 + AT_rich Low_complexity Low_complexity 1 32 0 613 330 50 4 chr13 39055874 39056132 -62817037 - HERVL LTR ERVL -1514 4140 3871 615 133 0 0 chr13 39056338 39056436 -62816733 - L1PB4 LINE L1 -6 6150 6053 474 204 29 0 chr13 39056629 39056732 -62816437 - MER5A DNA MER1_type -77 112 7 257 279 148 25 chr13 39056767 39056889 -62816280 - HERVL LTR ERVL -2984 2780 2644 523 269 44 47 chr13 39057539 39057836 -62815333 + L1MDa LINE L1 1295 1590 -4950 22 35 0 0 chr13 39059810 39059839 -62813330 + AT_rich Low_complexity Low_complexity 1 29 0 776 223 100 120 chr13 39060384 39060873 -62812296 + LTR28 LTR ERV1 1 602 -418 1113 243 104 25 chr13 39060880 39061411 -62811758 + L1M4 LINE L1 3528 4100 -2046 343 277 47 43 chr13 39061445 39061680 -62811489 + L1M4 LINE L1 4178 4413 -1733 4132 187 39 23 chr13 39061719 39062602 -62810567 + L1ME1 LINE L1 20 916 -5468 508 162 20 0 chr13 39062604 39062703 -62810466 + L1ME1 LINE L1 1274 1374 -5010 1725 180 17 11 chr13 39062717 39063067 -62810102 - L1MC1 LINE L1 -255 6078 5727 3660 236 216 39 chr13 39063105 39063365 -62809804 - L1M1 LINE L1 -4485 2621 2408 1215 104 11 127 chr13 39063365 39063625 -62809544 + MER30 DNA MER1_type 1 230 0 3660 236 216 39 chr13 39063625 39064714 -62808455 - L1M1 LINE L1 -4698 2408 1513 2339 181 19 2 chr13 39064714 39065135 -62808034 - MSTA LTR MaLR 0 428 1 3660 236 216 39 chr13 39065135 39066284 -62806885 - L1M1 LINE L1 -5593 1513 1 26 74 0 0 chr13 39067369 39067423 -62805746 + AT_rich Low_complexity Low_complexity 1 54 0 598 235 0 37 chr13 39068814 39068950 -62804219 - FLAM_C SINE Alu -2 131 1 206 182 124 16 chr13 39069027 39069148 -62804021 + (CTAAT)n Simple_repeat Simple_repeat 4 137 0 576 306 17 0 chr13 39069560 39069740 -62803429 - L2 LINE L2 -526 2788 2606 2302 56 0 56 chr13 39069854 39070176 -62802993 + AluY SINE Alu 1 304 -7 1078 271 62 39 chr13 39070525 39071277 -62801892 + L1ME1 LINE L1 2961 3730 -2652 823 258 51 60 chr13 39071283 39071636 -62801533 + MLT1A1 LTR MaLR 16 365 0 763 254 70 0 chr13 39071644 39071888 -62801281 + L1ME1 LINE L1 3733 3993 -2389 346 93 74 0 chr13 39071916 39072024 -62801145 + (TA)n Simple_repeat Simple_repeat 1 116 0 38 0 0 0 chr13 39072070 39072108 -62801061 + AT_rich Low_complexity Low_complexity 1 38 0 819 266 142 40 chr13 39072116 39072631 -62800538 + L1ME1 LINE L1 4034 4637 -1745 2090 135 0 0 chr13 39072631 39072928 -62800241 - AluSx SINE Alu -15 297 1 819 266 142 40 chr13 39072928 39073093 -62800076 + L1ME1 LINE L1 4637 4784 -1598 279 0 0 0 chr13 39073093 39073124 -62800045 + (TG)n Simple_repeat Simple_repeat 2 32 0 906 265 78 30 chr13 39073156 39073692 -62799477 + L1ME1 LINE L1 4962 5523 -859 2443 304 44 25 chr13 39073719 39074413 -62798756 + L1MB7 LINE L1 -283 429 -6117 1832 160 4 0 chr13 39074413 39074715 -62798454 - AluSq SINE Alu 0 303 1 2443 304 44 25 chr13 39074715 39074776 -62798393 + L1MB7 LINE L1 429 487 -6059 1588 251 60 27 chr13 39074785 39075800 -62797369 + L1MB7 LINE L1 877 2084 -4741 232 246 0 0 chr13 39075861 39075918 -62797251 + L1MB7 LINE L1 4187 4243 -2401 2222 211 51 16 chr13 39075940 39076252 -62796917 + L1MB7 LINE L1 5428 5728 -954 910 250 104 24 chr13 39076252 39076588 -62796581 - MLT1A1 LTR MaLR 0 365 3 2222 211 51 16 chr13 39076588 39077156 -62796013 + L1MB7 LINE L1 5728 6336 -346 626 239 0 0 chr13 39077181 39077298 -62795871 + FRAM SINE Alu 35 151 -25 888 184 6 6 chr13 39077330 39077509 -62795660 + L1MB7 LINE L1 6503 6681 -1 2043 246 44 80 chr13 39077511 39078430 -62794739 + L1ME1 LINE L1 5521 6383 -19 2457 64 0 3 chr13 39078605 39078917 -62794252 + AluY SINE Alu 1 311 0 430 332 34 42 chr13 39081474 39081712 -62791457 + MLT1H LTR MaLR 43 278 -271 6003 112 10 1 chr13 39082205 39083330 -62789839 + L1PA13 LINE L1 5030 6163 0 26 30 0 0 chr13 39085544 39085577 -62787592 + AT_rich Low_complexity Low_complexity 1 33 0 674 238 21 0 chr13 39085580 39085764 -62787405 + AluJb SINE Alu 138 324 0 1827 152 76 0 chr13 39085765 39086068 -62787101 - LTR17 LTR ERV1 0 780 455 3337 64 0 7 chr13 39086069 39086520 -62786649 + LTR7 LTR ERV1 1 448 -2 19349 91 25 34 chr13 39086522 39089543 -62783626 + HERVH LTR ERV1 1 2995 -4718 6118 89 3 0 chr13 39089522 39090373 -62782796 + HERVH LTR ERV1 3140 3993 -3720 * 4281 148 1 1 chr13 39090375 39091037 -62782132 + HERVH LTR ERV1 4488 5149 -2564 1327 121 17 52 chr13 39091034 39091265 -62781904 + HERVH LTR ERV1 5597 5819 -1894 * 2390 97 45 13 chr13 39091263 39091643 -62781526 + HERVH LTR ERV1 7322 7713 0 3252 69 2 9 chr13 39091643 39092094 -62781075 + LTR7 LTR ERV1 1 448 -2 3084 117 2 11 chr13 39092096 39092558 -62780611 - LTR17 LTR ERV1 -322 458 1 900 138 6 11 chr13 39092822 39092996 -62780173 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 25 90 0 0 chr13 39093048 39093115 -62780054 + AT_rich Low_complexity Low_complexity 1 67 0 344 332 46 38 chr13 39093483 39093721 -62779448 + Charlie8 DNA MER1_type 7 246 -2171 21 36 0 0 chr13 39093849 39093877 -62779292 + AT_rich Low_complexity Low_complexity 1 28 0 523 189 18 0 chr13 39094004 39094115 -62779054 - L1MA8 LINE L1 -10 6281 6169 29 0 0 0 chr13 39094807 39094836 -62778333 + AT_rich Low_complexity Low_complexity 1 29 0 313 242 98 39 chr13 39094899 39095052 -62778117 + L1ME4a LINE L1 5707 5868 -253 376 343 183 27 chr13 39095091 39095735 -62777434 - L2 LINE L2 -5 3308 1528 24 67 0 0 chr13 39098649 39098694 -62774475 + AT_rich Low_complexity Low_complexity 1 45 0 217 217 14 14 chr13 39100778 39100847 -62772322 + (TATG)n Simple_repeat Simple_repeat 3 71 0 1569 205 3 3 chr13 39101035 39101332 -62771837 + AluJo SINE Alu 15 311 -1 2487 69 110 90 chr13 39104725 39104766 -62768403 - MLT2A1 LTR ERVL 0 444 405 1078 99 0 11 chr13 39104766 39104948 -62768221 + (TA)n Simple_repeat Simple_repeat 1 180 0 2487 69 110 90 chr13 39104948 39105341 -62767828 - MLT2A1 LTR ERVL -39 405 1 839 265 34 0 chr13 39105591 39105825 -62767344 - MER58 DNA MER1_type -2169 251 10 1630 253 82 21 chr13 39105922 39106408 -62766761 - MLT1E2 LTR MaLR 0 626 111 947 264 158 64 chr13 39106752 39107271 -62765898 - MLT1G1 LTR MaLR -27 568 1 598 248 4 91 chr13 39108806 39109048 -62764121 + L2 LINE L2 3088 3308 -5 649 76 19 9 chr13 39109051 39109156 -62764013 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 356 164 31 23 chr13 39109259 39109387 -62763782 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 1820 158 14 0 chr13 39109474 39109766 -62763403 + AluSx SINE Alu 5 300 -12 22 35 0 0 chr13 39110819 39110848 -62762321 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 39111344 39111373 -62761796 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 39111793 39111825 -62761344 + AT_rich Low_complexity Low_complexity 1 32 0 36 62 0 0 chr13 39112077 39112141 -62761028 + AT_rich Low_complexity Low_complexity 1 64 0 835 146 0 15 chr13 39113370 39113507 -62759662 + AluSg/x SINE Alu 176 310 -2 24 0 0 0 chr13 39113883 39113907 -62759262 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 39116769 39116790 -62756379 + AT_rich Low_complexity Low_complexity 1 21 0 342 309 83 24 chr13 39116913 39117081 -62756088 - MIR SINE MIR -70 192 15 202 373 82 0 chr13 39117088 39117198 -62755971 + L2 LINE L2 3148 3266 -6 21 0 0 0 chr13 39118009 39118030 -62755139 + AT_rich Low_complexity Low_complexity 1 21 0 354 23 0 0 chr13 39119041 39119084 -62754085 + (CA)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr13 39119559 39119591 -62753578 + AT_rich Low_complexity Low_complexity 1 32 0 327 25 0 0 chr13 39119713 39119753 -62753416 + (TG)n Simple_repeat Simple_repeat 2 41 0 1388 236 73 47 chr13 39120851 39121343 -62751826 - MLT1D LTR MaLR 0 505 1 1756 153 177 11 chr13 39121862 39122229 -62750940 - MSTA LTR MaLR 0 428 1 26 74 0 0 chr13 39122364 39122418 -62750751 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr13 39124855 39124885 -62748284 + AT_rich Low_complexity Low_complexity 1 30 0 216 236 0 18 chr13 39125350 39125405 -62747764 + (TA)n Simple_repeat Simple_repeat 2 55 0 328 319 30 71 chr13 39125640 39125809 -62747360 + MIR SINE MIR 35 196 -66 234 0 0 0 chr13 39126504 39126530 -62746639 + (GA)n Simple_repeat Simple_repeat 2 27 0 248 294 102 59 chr13 39126546 39126920 -62746249 - Tigger8 DNA MER2_type -165 501 112 1016 269 101 27 chr13 39127781 39128146 -62745023 + MSTD LTR MaLR 1 392 -4 1211 120 0 0 chr13 39128470 39128637 -62744532 + AluSg/x SINE Alu 137 303 -9 239 330 27 36 chr13 39128689 39128801 -62744368 - L2 LINE L2 -334 2938 2828 940 137 68 0 chr13 39128937 39129098 -62744071 - Tigger5 DNA MER2_type 0 2323 2152 589 216 0 0 chr13 39129090 39129201 -62743968 - Tigger5 DNA MER2_type -2206 117 7 * 280 206 10 10 chr13 39129311 39129408 -62743761 + GA-rich Low_complexity Low_complexity 4 100 0 1099 203 90 69 chr13 39129589 39129978 -62743191 + MER39 LTR ERV1 311 707 0 343 172 11 11 chr13 39129991 39130078 -62743091 + GA-rich Low_complexity Low_complexity 3 89 0 26 50 0 0 chr13 39130981 39131021 -62742148 + AT_rich Low_complexity Low_complexity 1 40 0 26 64 0 0 chr13 39131046 39131093 -62742076 + AT_rich Low_complexity Low_complexity 1 47 0 1252 273 47 93 chr13 39131711 39132282 -62740887 + MER77 LTR ERV1 55 599 -6 1748 161 174 8 chr13 39132465 39132832 -62740337 + MSTA LTR MaLR 1 428 0 8367 184 26 12 chr13 39132832 39134459 -62738710 + MSTA-int LTR MaLR 1 1651 0 1701 161 151 6 chr13 39134459 39134783 -62738386 + MSTA LTR MaLR 1 371 -57 2215 103 0 3 chr13 39134973 39135275 -62737894 + AluSq SINE Alu 1 301 -12 2193 157 32 71 chr13 39135657 39136149 -62737020 - L1MA4A LINE L1 -3 6300 5828 315 132 176 22 chr13 39136156 39136247 -62736922 + L1MC4 LINE L1 6617 6721 -1321 246 265 102 31 chr13 39136172 39136270 -62736899 - L1MC4 LINE L1 -1323 6719 6615 * 1598 179 7 3 chr13 39136280 39136571 -62736598 - L1MA4A LINE L1 -523 5777 5486 195 373 0 0 chr13 39136877 39136952 -62736217 - MIR SINE MIR -82 126 52 24 0 0 0 chr13 39137965 39137989 -62735180 + AT_rich Low_complexity Low_complexity 1 24 0 478 159 20 17 chr13 39138309 39138330 -62734839 - L1M1 LINE L1 -811 5492 5473 890 164 0 11 chr13 39138330 39138507 -62734662 - L1MA5 LINE L1 -2 6298 6124 478 159 20 17 chr13 39138507 39138612 -62734557 - L1M1 LINE L1 -830 5473 5369 1186 117 0 0 chr13 39138612 39138774 -62734395 - AluSp SINE Alu -18 295 134 641 233 43 95 chr13 39139114 39139346 -62733823 + AluJo SINE Alu 93 312 0 33 25 0 0 chr13 39139425 39139465 -62733704 + AT_rich Low_complexity Low_complexity 1 40 0 281 264 47 23 chr13 39139518 39139647 -62733522 - HAL1 LINE L1 -56 2451 2320 22 0 0 0 chr13 39139755 39139777 -62733392 + AT_rich Low_complexity Low_complexity 1 22 0 252 208 23 27 chr13 39139882 39139973 -62733196 + HsTC2 DNA Tc2 1803 1896 -2 313 355 29 41 chr13 39140323 39140565 -62732604 - HAL1 LINE L1 -782 1725 1487 264 288 56 69 chr13 39140629 39140862 -62732307 - HAL1 LINE L1 -1047 1460 1231 21 0 0 0 chr13 39141313 39141334 -62731835 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr13 39142626 39142666 -62730503 + AT_rich Low_complexity Low_complexity 1 40 0 428 35 17 0 chr13 39143715 39143773 -62729396 + (TC)n Simple_repeat Simple_repeat 2 60 0 * 433 168 26 26 chr13 39143772 39143927 -62729242 + (TA)n Simple_repeat Simple_repeat 1 155 0 2050 200 54 7 chr13 39144029 39144434 -62728735 - MSTB LTR MaLR 0 426 3 7001 195 65 33 chr13 39144440 39146036 -62727133 - MSTB-int LTR MaLR -4 1647 1 1602 246 57 2 chr13 39146036 39146442 -62726727 - MSTA LTR MaLR 0 428 1 2575 52 0 0 chr13 39146610 39146920 -62726249 - AluY SINE Alu -1 310 1 357 316 75 32 chr13 39146981 39147168 -62726001 + MIR SINE MIR 50 244 -18 1020 263 49 42 chr13 39147346 39147772 -62725397 - MER110A LTR ERV1 0 468 40 3901 280 70 44 chr13 39148064 39149835 -62723334 - MER110-int LTR ERV1 -458 4189 2373 1102 193 89 55 chr13 39149949 39150275 -62722894 + MER2 DNA MER2_type 9 345 0 1146 311 68 54 chr13 39150294 39150706 -62722463 - MER110-int LTR ERV1 -2441 2206 1801 1728 155 58 22 chr13 39150706 39151068 -62722101 - THE1C LTR MaLR 0 375 1 1146 311 68 54 chr13 39151068 39151206 -62721963 - MER110-int LTR ERV1 -2846 1801 1666 2380 90 0 3 chr13 39151206 39151516 -62721653 - AluSx SINE Alu 0 312 4 1146 311 68 54 chr13 39151516 39151777 -62721392 - MER110-int LTR ERV1 -2981 1666 1383 481 370 46 27 chr13 39151869 39152307 -62720862 - MER110-int LTR ERV1 -3244 3557 3112 572 296 90 85 chr13 39152516 39153127 -62720042 - MER110-int LTR ERV1 -3868 779 166 2881 253 43 23 chr13 39153160 39154400 -62718769 - L1M4 LINE L1 -2029 4615 3351 491 308 0 0 chr13 39154400 39154530 -62718639 + Tigger3(Golem) DNA MER2_type 1 130 -2899 1304 183 33 0 chr13 39154590 39154830 -62718339 + Tigger3(Golem) DNA MER2_type 2791 3038 0 1562 257 131 30 chr13 39154860 39155827 -62717342 - L1M4 LINE L1 -3324 3320 2177 3472 56 2 2 chr13 39155827 39156275 -62716894 + LTR7 LTR ERV1 1 448 -2 1562 257 131 30 chr13 39156275 39156619 -62716550 - L1M4 LINE L1 -4467 2177 1869 561 231 75 8 chr13 39156733 39156867 -62716302 - FLAM_C SINE Alu 0 143 1 409 299 13 0 chr13 39156869 39157026 -62716143 - L1M4 LINE L1 -4877 1665 1507 4964 179 26 19 chr13 39157072 39158255 -62714914 - L1MA3 LINE L1 0 6305 5114 3143 57 27 11 chr13 39158256 39158697 -62714472 - LTR7 LTR ERV1 -2 448 1 2356 93 50 13 chr13 39158697 39159075 -62714094 - HERVH LTR ERV1 0 7713 7322 1380 109 20 0 chr13 39159073 39159274 -62713895 - HERVH LTR ERV1 -1894 5819 5615 * 4151 147 8 1 chr13 39159299 39159957 -62713212 - HERVH LTR ERV1 -2564 5149 4488 3359 105 4 4 chr13 39159959 39160453 -62712716 - HERVH LTR ERV1 -3720 3993 3500 * 20572 86 58 31 chr13 39160452 39163653 -62709516 - HERVH LTR ERV1 -4423 3290 1 3291 75 0 7 chr13 39163655 39164106 -62709063 - LTR7 LTR ERV1 -2 448 1 1573 196 14 14 chr13 39164106 39164464 -62708705 - L1MA3 LINE L1 -1027 5119 4762 665 279 54 17 chr13 39164433 39164784 -62708385 - L1M4 LINE L1 -5056 1486 1123 * 1066 211 68 51 chr13 39164792 39165172 -62707997 - MER67C LTR ERV1 -13 501 152 725 300 113 70 chr13 39165221 39165445 -62707724 - L1M4 LINE L1 -5671 871 658 2309 86 0 3 chr13 39165445 39165746 -62707423 + AluY SINE Alu 1 300 -11 725 300 113 70 chr13 39165746 39166344 -62706825 - L1M4 LINE L1 -5884 658 14 194 62 31 0 chr13 39167401 39167433 -62705736 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1276 200 85 11 chr13 39168060 39168330 -62704839 - AluJo SINE Alu -22 290 1 3346 206 15 11 chr13 39169959 39170702 -62702467 - L1MB4 LINE L1 -8 6172 5427 204 381 7 43 chr13 39171672 39171811 -62701358 + L2 LINE L2 3137 3270 -2 2150 163 8 5 chr13 39172791 39173165 -62700004 - THE1C LTR MaLR 0 375 1 351 150 0 0 chr13 39173553 39173613 -62699556 + (TA)n Simple_repeat Simple_repeat 1 60 0 292 192 40 61 chr13 39173712 39173811 -62699358 - L1MC4 LINE L1 -1339 6703 6607 527 349 65 9 chr13 39175479 39175711 -62697458 + MIR SINE MIR 17 261 -1 312 207 24 0 chr13 39176486 39176568 -62696601 - L1MA8 LINE L1 -15 6276 6193 23 0 0 0 chr13 39176758 39176781 -62696388 + AT_rich Low_complexity Low_complexity 1 23 0 259 114 0 0 chr13 39177799 39177843 -62695326 - L1PA16 LINE L1 -9 6157 6114 2602 160 38 62 chr13 39178083 39178682 -62694487 + L1MA7 LINE L1 5707 6291 0 311 64 0 21 chr13 39178745 39178792 -62694377 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 579 385 20 6 chr13 39179067 39179412 -62693757 - ERVL LTR ERVL -659 5105 4756 306 182 0 0 chr13 39180041 39180107 -62693062 + GA-rich Low_complexity Low_complexity 1 66 0 546 338 115 24 chr13 39180288 39180741 -62692428 - ERVL LTR ERVL -1287 4367 3874 27 73 0 0 chr13 39181075 39181130 -62692039 + AT_rich Low_complexity Low_complexity 1 55 0 388 342 113 30 chr13 39181380 39181716 -62691453 - ERVL LTR ERVL -2397 3257 2894 514 360 55 25 chr13 39182040 39182476 -62690693 - ERVL LTR ERVL -3112 2542 2094 308 315 37 0 chr13 39183810 39183918 -62689251 - L2 LINE L2 0 3313 3202 1782 150 41 20 chr13 39183918 39184211 -62688958 + THE1B LTR MaLR 1 299 -65 3627 113 0 4 chr13 39184211 39184717 -62688452 + THE1-int LTR MaLR 1056 1559 -21 306 289 0 0 chr13 39184818 39185018 -62688151 + G-rich Low_complexity Low_complexity 1 200 0 4068 117 134 28 chr13 39185434 39186181 -62686988 + LTR12 LTR ERV1 1 826 0 883 72 84 4 chr13 39186181 39186303 -62686866 + LTR12 LTR ERV1 452 563 -151 2114 79 0 67 chr13 39186303 39186633 -62686536 + L1PA8 LINE L1 5863 6170 -2 883 72 84 4 chr13 39186633 39186649 -62686520 + LTR12 LTR ERV1 563 712 -2 337 429 16 4 chr13 39186739 39186993 -62686176 - MIR SINE MIR -2 260 4 914 226 74 109 chr13 39187137 39187822 -62685347 + LTR1B LTR ERV1 1 751 -75 23873 129 9 3 chr13 39188150 39192508 -62680661 - L1PA8A LINE L1 -299 5832 1453 763 313 72 51 chr13 39192760 39193725 -62679444 - ERVL LTR ERVL -2918 2567 1742 327 350 70 46 chr13 39197510 39197898 -62675271 + L2 LINE L2 1964 2360 -954 25 20 0 59 chr13 39198938 39198989 -62674180 + AT_rich Low_complexity Low_complexity 1 48 0 382 331 63 63 chr13 39199081 39199443 -62673726 + L1ME LINE L1 1265 1626 -4758 277 233 48 0 chr13 39199704 39199807 -62673362 + L1ME LINE L1 2515 2622 -3760 183 153 0 51 chr13 39199814 39199873 -62673296 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 867 320 58 14 chr13 39199875 39200647 -62672522 + L1ME LINE L1 2753 3558 -2824 259 307 11 0 chr13 39200761 39200849 -62672320 + L1ME LINE L1 3713 3801 -2581 848 267 20 24 chr13 39200944 39201195 -62671974 + MLT2D LTR ERVL 1 250 -164 279 203 0 0 chr13 39201379 39201443 -62671726 + (CA)n Simple_repeat Simple_repeat 2 65 0 304 128 0 0 chr13 39201443 39201490 -62671679 + MLT2D LTR ERVL 367 413 -1 307 318 67 28 chr13 39201576 39201831 -62671338 + L1ME LINE L1 4107 4371 -2011 1507 279 77 2 chr13 39202388 39202790 -62670379 + MER70B LTR ERVL 4 435 -143 1503 155 18 7 chr13 39203091 39203375 -62669794 + L1MB1 LINE L1 5882 6168 0 320 302 54 20 chr13 39203494 39203643 -62669526 + L1MC4 LINE L1 7749 7902 -140 339 25 0 0 chr13 39203644 39203684 -62669485 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr13 39203729 39203752 -62669417 + AT_rich Low_complexity Low_complexity 1 23 0 183 357 14 0 chr13 39203768 39203838 -62669331 - L2 LINE L2 -560 2754 2684 1055 314 121 15 chr13 39203838 39204300 -62668869 + MER69 DNA AcHobo 2 512 -2014 528 219 215 5 chr13 39204303 39204522 -62668647 + MER69 DNA AcHobo 2166 2430 -96 294 279 121 19 chr13 39207007 39207272 -62665897 + L1ME LINE L1 4554 4845 -1537 487 276 60 15 chr13 39207293 39207492 -62665677 + L1ME LINE L1 5636 5843 -563 4475 70 12 6 chr13 39209593 39210615 -62662554 - MER11A LTR ERVK 0 1266 1 21 36 0 0 chr13 39210880 39210908 -62662261 + AT_rich Low_complexity Low_complexity 1 28 0 423 340 92 49 chr13 39212051 39212419 -62660750 + L1MEd LINE L1 4 387 -5732 28 0 0 0 chr13 39212736 39212764 -62660405 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 78 6 chr13 39212859 39213025 -62660144 - MIR SINE MIR -72 190 13 362 231 41 0 chr13 39213372 39213519 -62659650 + (TA)n Simple_repeat Simple_repeat 2 154 0 28 61 0 0 chr13 39213638 39213687 -62659482 + AT_rich Low_complexity Low_complexity 1 49 0 261 57 0 0 chr13 39216047 39216082 -62657087 + (TA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chr13 39216685 39216726 -62656443 + AT_rich Low_complexity Low_complexity 1 41 0 180 304 13 38 chr13 39217811 39217890 -62655279 - MIR SINE MIR 0 262 186 2385 158 42 8 chr13 39217912 39218392 -62654777 - L1MA4 LINE L1 -5 6295 5800 2049 125 28 3 chr13 39218393 39218714 -62654455 - Tigger4(Zombi) DNA MER2_type -877 1854 1526 23 0 0 0 chr13 39218895 39218918 -62654251 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 39219117 39219140 -62654029 + AT_rich Low_complexity Low_complexity 1 23 0 401 315 117 0 chr13 39219658 39219820 -62653349 - MIR SINE MIR -30 232 52 998 130 33 15 chr13 39219822 39220154 -62653015 + MSTA LTR MaLR 1 428 0 301 211 14 14 chr13 39220298 39220369 -62652800 + MER94 DNA DNA 16 86 -48 201 279 148 41 chr13 39220928 39221050 -62652119 - L2 LINE L2 -1 3271 3137 248 308 0 0 chr13 39223711 39223789 -62649380 - MLT1H LTR MaLR -460 89 12 866 323 48 60 chr13 39224250 39224751 -62648418 - L2 LINE L2 -420 2894 2400 255 345 85 14 chr13 39224969 39225192 -62647977 - ERVL LTR ERVL -465 5299 5061 287 304 43 0 chr13 39225512 39225627 -62647542 - ERVL LTR ERVL -1006 4648 4529 393 329 67 36 chr13 39225766 39225991 -62647178 - ERVL LTR ERVL -1315 4339 4108 262 380 72 0 chr13 39226057 39226172 -62646997 - ERVL LTR ERVL -1657 3997 3892 23 0 0 0 chr13 39226172 39226195 -62646974 + AT_rich Low_complexity Low_complexity 1 23 0 262 380 72 0 chr13 39226195 39226307 -62646862 - ERVL LTR ERVL -1762 3892 3730 376 355 20 4 chr13 39227014 39227221 -62645948 - ERVL LTR ERVL -2544 3149 2903 1043 257 79 14 chr13 39228580 39228657 -62644512 + MLT1B LTR MaLR 1 72 -318 2089 125 3 3 chr13 39228657 39228960 -62644209 - AluSx SINE Alu -9 303 1 1043 257 79 14 chr13 39228960 39229248 -62643921 + MLT1B LTR MaLR 72 390 0 232 218 64 26 chr13 39229248 39229326 -62643843 - L1ME3A LINE L1 -13 6157 6077 2500 143 44 5 chr13 39229391 39229803 -62643366 - MSTA LTR MaLR 0 428 1 7802 190 30 23 chr13 39229803 39231442 -62641727 - MSTA-int LTR MaLR 0 1651 1 1148 128 18 82 chr13 39231442 39231510 -62641659 - MSTA LTR MaLR 0 428 357 2054 100 0 4 chr13 39231510 39231779 -62641390 + AluSc SINE Alu 37 304 -5 1148 128 18 82 chr13 39231779 39231929 -62641240 - MSTA LTR MaLR -71 357 224 701 111 0 0 chr13 39231938 39232037 -62641132 - MSTA LTR MaLR -329 99 1 1428 301 44 9 chr13 39232134 39232659 -62640510 - L1ME3A LINE L1 -258 5912 5370 23 33 0 0 chr13 39234657 39234687 -62638482 + AT_rich Low_complexity Low_complexity 1 30 0 401 196 127 82 chr13 39236511 39236669 -62636500 + MLT1J LTR MaLR 6 170 -341 560 319 62 36 chr13 39237228 39237564 -62635605 + MLT1J LTR MaLR 167 511 0 229 241 19 0 chr13 39238037 39238091 -62635078 + MLT1J1 LTR MaLR 84 138 -308 401 375 63 13 chr13 39238945 39239244 -62633925 + L1MEd LINE L1 350 663 -5456 928 253 52 57 chr13 39239254 39239622 -62633547 - MER74B LTR ERVL -68 554 189 2971 175 38 4 chr13 39240592 39241151 -62632018 + HSMAR2 DNA Mariner 718 1295 -7 1224 246 62 14 chr13 39241183 39241540 -62631629 - MLT1A2 LTR MaLR 0 374 1 623 209 0 0 chr13 39241675 39241809 -62631360 - L1PB3 LINE L1 -2285 3861 3728 * 6089 196 24 17 chr13 39241805 39243404 -62629765 + L1PB3 LINE L1 3891 5496 -658 1357 224 26 0 chr13 39243408 39243712 -62629457 + AluJb SINE Alu 7 317 0 3571 164 31 5 chr13 39243712 39244359 -62628810 + L1PB3 LINE L1 5487 6150 -4 313 348 32 32 chr13 39244627 39244782 -62628387 + MIR SINE MIR 5 159 -103 37 39 0 0 chr13 39244980 39245031 -62628138 + AT_rich Low_complexity Low_complexity 1 51 0 232 317 41 55 chr13 39245548 39245693 -62627476 - MIR SINE MIR -72 190 48 2726 193 58 11 chr13 39245839 39246408 -62626761 + L1P3 LINE L1 1 596 -5279 286 67 22 0 chr13 39246508 39246553 -62626616 + THE1B-int LTR MaLR 1535 1580 0 2086 160 36 14 chr13 39246553 39246909 -62626260 + THE1B LTR MaLR 1 364 0 460 258 67 11 chr13 39247904 39248082 -62625087 + L2 LINE L2 1773 1960 -1354 1971 183 35 29 chr13 39248082 39248627 -62624542 - MLT2A2 LTR ERVL -2 552 1 1515 347 114 16 chr13 39248634 39248930 -62624239 + L2 LINE L2 1961 2227 -1086 1881 204 23 21 chr13 39248930 39249362 -62623807 + Tigger2a DNA MER2_type 1 433 -1 1515 347 114 16 chr13 39249362 39250248 -62622921 + L2 LINE L2 2227 3269 -44 285 406 0 0 chr13 39250306 39250429 -62622740 + L2 LINE L2 3150 3272 0 21 0 0 0 chr13 39250528 39250549 -62622620 + AT_rich Low_complexity Low_complexity 1 21 0 240 253 48 0 chr13 39250612 39250695 -62622474 + L1MC4 LINE L1 6615 6701 -1341 558 230 18 0 chr13 39250858 39250971 -62622198 - FLAM_A SINE Alu -16 126 12 1949 143 3 3 chr13 39251679 39251972 -62621197 + AluSx SINE Alu 4 296 -16 21 0 0 0 chr13 39252070 39252091 -62621078 + AT_rich Low_complexity Low_complexity 1 21 0 657 287 36 10 chr13 39254439 39254634 -62618535 + MLT1E LTR MaLR 41 240 -353 301 336 90 36 chr13 39254997 39255274 -62617895 + L2 LINE L2 3021 3312 -1 214 167 33 0 chr13 39255598 39255658 -62617511 + (TA)n Simple_repeat Simple_repeat 1 62 0 354 23 0 0 chr13 39256985 39257028 -62616141 + (TG)n Simple_repeat Simple_repeat 2 44 0 1295 184 19 99 chr13 39257059 39257424 -62615745 - MLT2C1 LTR ERVL -61 336 1 257 75 25 0 chr13 39257440 39257480 -62615689 + (TA)n Simple_repeat Simple_repeat 1 41 0 22 35 0 0 chr13 39257926 39257955 -62615214 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr13 39259071 39259118 -62614051 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr13 39259130 39259162 -62614007 + AT_rich Low_complexity Low_complexity 1 32 0 1544 151 125 20 chr13 39259283 39259588 -62613581 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr13 39259938 39259966 -62613203 + AT_rich Low_complexity Low_complexity 1 28 0 638 260 51 46 chr13 39260991 39261187 -62611982 + L2 LINE L2 2339 2535 -779 801 220 13 0 chr13 39261187 39261346 -62611823 + MER2 DNA MER2_type 1 161 -184 375 144 0 0 chr13 39261354 39261424 -62611745 + L1M2 LINE L1 5594 5663 -493 402 148 0 37 chr13 39261433 39261514 -62611655 + MER2 DNA MER2_type 188 265 -80 353 231 71 156 chr13 39262261 39262426 -62610743 - MER58B DNA MER1_type -2080 340 163 1958 138 0 25 chr13 39262426 39262746 -62610423 + AluSx SINE Alu 1 312 0 353 231 71 156 chr13 39262746 39262757 -62610412 - MER58B DNA MER1_type -2257 163 153 2039 132 0 0 chr13 39262757 39263086 -62610083 + AluSx SINE Alu 1 312 0 353 231 71 156 chr13 39263086 39263146 -62610023 - MER58B DNA MER1_type -2267 153 6 1861 312 31 18 chr13 39263259 39263939 -62609230 + L1MA6 LINE L1 399 1087 -6479 1382 231 22 70 chr13 39264121 39264293 -62608876 + L1MA6 LINE L1 2696 2875 -4691 1551 225 0 3 chr13 39264293 39264604 -62608565 + AluJb SINE Alu 1 310 -2 1382 231 22 70 chr13 39264604 39264995 -62608174 + L1MA6 LINE L1 2875 3406 -4160 812 153 0 24 chr13 39264988 39265139 -62608030 + L1PA16 LINE L1 5898 6148 -18 * 423 78 0 65 chr13 39265139 39265212 -62607957 + L1PA16 LINE L1 6095 6166 0 812 153 0 24 chr13 39265212 39265231 -62607938 + L1PA16 LINE L1 6148 6166 0 3102 237 15 39 chr13 39265242 39265549 -62607620 + L1MA6 LINE L1 3293 3606 -3959 676 118 18 0 chr13 39265549 39265659 -62607510 + L1MA1 LINE L1 6187 6298 -4 3102 237 15 39 chr13 39265659 39266515 -62606654 + L1MA6 LINE L1 3606 4434 -3131 1896 203 56 33 chr13 39266502 39266706 -62606463 + L1PB4 LINE L1 5697 5895 -261 * 1637 123 25 4 chr13 39266706 39266949 -62606220 + AluSx SINE Alu 54 301 -11 1896 203 56 33 chr13 39266949 39267193 -62605976 + L1PB4 LINE L1 5895 6155 -1 10312 196 17 21 chr13 39267196 39270241 -62602928 + L1MA6 LINE L1 4447 7479 -240 331 140 18 0 chr13 39270246 39270303 -62602866 + L1MB8 LINE L1 5932 5989 -189 912 148 28 22 chr13 39270775 39270957 -62602212 + L1MB8 LINE L1 5996 6178 0 2277 198 9 0 chr13 39271485 39271929 -62601240 + L1M1 LINE L1 470 917 -6648 586 292 5 10 chr13 39271945 39272140 -62601029 - L1P LINE L1 -1543 4603 4410 630 183 39 10 chr13 39272283 39272429 -62600740 + MSTA LTR MaLR 1 163 -294 414 0 0 0 chr13 39272429 39272475 -62600694 + (TA)n Simple_repeat Simple_repeat 2 47 0 6463 83 20 0 chr13 39272485 39273689 -62599480 - L1PA7 LINE L1 -30 6124 4893 1871 108 0 0 chr13 39273685 39273962 -62599207 + L1PA7 LINE L1 4591 4867 -1279 * 1325 191 29 0 chr13 39273963 39274209 -62598960 + MSTA LTR MaLR 159 411 -17 271 143 48 0 chr13 39274278 39274341 -62598828 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 22 0 0 0 chr13 39274385 39274407 -62598762 + AT_rich Low_complexity Low_complexity 1 22 0 1057 307 52 28 chr13 39275571 39276073 -62597096 - HERV16 LTR ERVL -2909 2087 1574 1429 351 57 32 chr13 39276428 39277454 -62595715 - HERV16 LTR ERVL -3894 1102 52 547 359 45 0 chr13 39277581 39277801 -62595368 - LTR16A LTR ERVL -113 337 108 821 271 54 24 chr13 39278453 39278921 -62594248 + MLT1F LTR MaLR 1 567 0 272 352 76 0 chr13 39279701 39279806 -62593363 + L2 LINE L2 3193 3305 -8 216 0 0 0 chr13 39279811 39279835 -62593334 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 737 282 0 0 chr13 39280195 39280383 -62592786 - AluSg/x SINE Alu -19 293 106 308 200 27 33 chr13 39280606 39280756 -62592413 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 242 209 20 40 chr13 39280780 39280928 -62592241 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 22 99 0 0 chr13 39280948 39281019 -62592150 + AT_rich Low_complexity Low_complexity 1 71 0 1866 105 0 0 chr13 39281409 39281657 -62591512 + AluY SINE Alu 55 302 -9 412 289 52 69 chr13 39281663 39282141 -62591028 + L1ME LINE L1 4610 5079 -1067 8202 217 36 18 chr13 39282302 39282691 -62590478 + L1PA16 LINE L1 2855 3235 -2931 240 35 0 0 chr13 39282691 39282720 -62590449 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8202 217 36 18 chr13 39282720 39285479 -62587690 + L1PA16 LINE L1 3235 6058 -108 418 68 0 68 chr13 39285482 39285555 -62587614 + L1PA16 LINE L1 6097 6164 -2 515 260 37 94 chr13 39285589 39285970 -62587199 - L1MCa LINE L1 -5008 1418 1060 2528 150 50 2 chr13 39286550 39286969 -62586200 - Tigger2 DNA MER2_type 0 2718 2280 351 194 30 0 chr13 39286967 39287034 -62586135 - Tigger2 DNA MER2_type -2649 69 1 * 344 254 124 0 chr13 39287230 39287423 -62585746 + L1M4 LINE L1 3791 4007 -2139 26 50 0 0 chr13 39287448 39287488 -62585681 + AT_rich Low_complexity Low_complexity 1 40 0 809 292 106 22 chr13 39287592 39288082 -62585087 + L1ME LINE L1 5259 5789 -381 320 311 28 11 chr13 39288109 39288286 -62584883 + L1ME3A LINE L1 5675 5854 -316 2113 139 0 0 chr13 39289184 39289487 -62583682 + AluSx SINE Alu 1 303 -9 1382 192 54 61 chr13 39292482 39292873 -62580296 - MLT1B LTR MaLR 0 390 3 530 207 81 19 chr13 39292989 39293006 -62580163 + L1M4 LINE L1 4040 4055 -2091 183 42 0 0 chr13 39293006 39293030 -62580139 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 530 207 81 19 chr13 39293030 39293183 -62579986 + L1M4 LINE L1 4055 4224 -1922 672 196 8 15 chr13 39293243 39293376 -62579793 + MLT1A1 LTR MaLR 1 132 -233 326 301 68 24 chr13 39293380 39293586 -62579583 + L1M4 LINE L1 3949 4163 -1983 634 31 62 21 chr13 39294174 39294270 -62578899 + L1PA13 LINE L1 6058 6157 -6 574 221 159 34 chr13 39294623 39294984 -62578185 - MER61D LTR ERV1 -10 969 202 * 757 292 6 6 chr13 39294960 39295138 -62578031 - LTR28 LTR ERV1 -842 178 1 278 285 53 46 chr13 39295470 39295621 -62577548 + L2 LINE L2 3098 3249 -64 21 0 0 0 chr13 39296757 39296778 -62576391 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 39297275 39297303 -62575866 + AT_rich Low_complexity Low_complexity 1 28 0 1398 146 0 19 chr13 39298076 39298288 -62574881 - AluSx SINE Alu -103 209 2 15859 191 50 11 chr13 39298290 39304685 -62568484 - L1M1 LINE L1 -694 7027 380 2321 238 11 2 chr13 39304687 39305145 -62568024 - L1M1 LINE L1 -5732 1833 1372 * 2471 215 30 39 chr13 39305144 39305906 -62567263 - L1 LINE L1 -2598 3548 2794 1275 287 10 0 chr13 39305911 39306298 -62566871 + L1P LINE L1 2423 2813 -3333 591 283 113 35 chr13 39306305 39306496 -62566673 + L1ME3 LINE L1 5477 5652 -510 342 0 0 0 chr13 39306496 39306534 -62566635 + (TA)n Simple_repeat Simple_repeat 2 39 0 591 283 113 35 chr13 39306534 39306688 -62566481 + L1ME3 LINE L1 5652 5849 -313 367 270 86 11 chr13 39307410 39307584 -62565585 + L1MEc LINE L1 2187 2373 -4023 211 245 75 32 chr13 39308495 39308589 -62564580 + MIR SINE MIR 117 214 -48 24 0 0 0 chr13 39308890 39308914 -62564255 + AT_rich Low_complexity Low_complexity 1 24 0 1677 124 37 33 chr13 39309809 39310082 -62563087 - AluSx SINE Alu -17 295 22 211 205 0 80 chr13 39310713 39310825 -62562344 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 306 254 0 15 chr13 39311442 39311509 -62561660 + LTR67 LTR ERVL 65 130 -427 12146 171 46 15 chr13 39312258 39312761 -62560408 + Tigger1 DNA MER2_type 1 487 -1931 1924 135 96 6 chr13 39312761 39313095 -62560074 + THE1B LTR MaLR 1 364 0 12146 171 46 15 chr13 39313095 39314938 -62558231 + Tigger1 DNA MER2_type 487 2418 0 241 301 98 28 chr13 39314975 39315118 -62558051 + L3 LINE CR1 1349 1501 -76 825 206 69 0 chr13 39316782 39316957 -62556212 + L1PB4 LINE L1 5970 6156 0 280 216 100 0 chr13 39317509 39317603 -62555566 + L1M4 LINE L1 5680 5790 -394 28 48 0 0 chr13 39317762 39317804 -62555365 + AT_rich Low_complexity Low_complexity 1 42 0 375 257 24 38 chr13 39318395 39318605 -62554564 - L1MCa LINE L1 -4492 2449 2243 2417 72 0 3 chr13 39318607 39318912 -62554257 + AluY SINE Alu 1 304 -7 641 283 80 47 chr13 39319187 39319373 -62553796 - L1MCa LINE L1 -4924 1915 1737 2202 108 7 3 chr13 39319373 39319680 -62553489 - AluSx SINE Alu -4 308 1 641 283 80 47 chr13 39319680 39320451 -62552718 - L1MCa LINE L1 -5102 1737 830 587 297 123 18 chr13 39320678 39321069 -62552100 - L1MCa LINE L1 -5968 455 24 354 295 76 62 chr13 39321475 39321699 -62551470 - L1MEd LINE L1 -5046 1073 847 1056 285 24 17 chr13 39321801 39322261 -62550908 + L1MC1 LINE L1 4335 4797 -1349 960 118 0 7 chr13 39322261 39322397 -62550772 + AluSq/x SINE Alu 1 135 -177 1461 135 0 0 chr13 39322397 39322619 -62550550 + AluSg/x SINE Alu 85 306 -4 4983 209 26 23 chr13 39322621 39324162 -62549007 + L1MC1 LINE L1 4786 6328 -5 32 43 0 0 chr13 39324667 39324713 -62548456 + AT_rich Low_complexity Low_complexity 1 46 0 44 46 0 0 chr13 39324832 39324897 -62548272 + AT_rich Low_complexity Low_complexity 1 65 0 1575 291 80 22 chr13 39325158 39325745 -62547424 - MLT1E2 LTR MaLR 0 626 6 226 231 60 51 chr13 39325747 39325864 -62547305 - L1MEd LINE L1 -4937 1182 1065 212 329 58 36 chr13 39326803 39326940 -62546229 + MIR3 SINE MIR 65 204 -4 230 194 43 11 chr13 39327129 39327222 -62545947 + (TA)n Simple_repeat Simple_repeat 1 96 0 1956 140 7 0 chr13 39327563 39327856 -62545313 + AluSg SINE Alu 3 297 -13 2128 129 15 9 chr13 39328116 39328457 -62544712 + LTR3b LTR ERVK 158 500 0 1416 136 0 5 chr13 39328807 39328835 -62544334 + MER41C-int LTR ERV1 7545 7756 0 1437 87 0 0 chr13 39328835 39329020 -62544149 + HERVK14 LTR ERVK 5575 5759 -186 394 145 0 16 chr13 39329020 39329082 -62544087 + MER41C LTR ERV1 1 61 -493 515 48 0 0 chr13 39329082 39329145 -62544024 + HERVK14 LTR ERVK 5822 5884 -61 1971 133 33 15 chr13 39329168 39329500 -62543669 + LTR3b LTR ERVK 159 496 -4 304 98 0 0 chr13 39329501 39329542 -62543627 + LTR3b LTR ERVK 460 500 0 514 204 0 19 chr13 39329577 39329680 -62543489 - MER8 DNA MER2_type 0 239 139 1105 166 112 4 chr13 39329681 39329940 -62543229 - L1P LINE L1 -783 5363 5077 543 287 0 8 chr13 39329940 39330062 -62543107 - MER8 DNA MER2_type -118 121 1 28 29 0 0 chr13 39330108 39330143 -62543026 + AT_rich Low_complexity Low_complexity 1 35 0 2006 135 13 0 chr13 39330839 39331142 -62542027 - AluSp SINE Alu -2 311 5 1807 113 35 18 chr13 39331143 39331425 -62541744 - AluSq SINE Alu -2 311 25 626 202 99 45 chr13 39332030 39332273 -62540896 - LTR37B LTR ERV1 0 468 213 2176 115 3 0 chr13 39332539 39332843 -62540326 + AluSg1 SINE Alu 1 305 -4 205 262 0 0 chr13 39333609 39333651 -62539518 + MIR SINE MIR 28 69 -193 24 53 0 0 chr13 39333837 39333875 -62539294 + AT_rich Low_complexity Low_complexity 1 38 0 1710 142 15 0 chr13 39333924 39334198 -62538971 + AluSx SINE Alu 1 278 -34 705 56 0 0 chr13 39334205 39334295 -62538874 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 205 212 136 0 chr13 39335494 39335560 -62537609 + MIR SINE MIR 156 230 -32 209 299 11 23 chr13 39336225 39336312 -62536857 + CT-rich Low_complexity Low_complexity 2 87 0 21 0 0 0 chr13 39337228 39337249 -62535920 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 39337299 39337322 -62535847 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr13 39337621 39337650 -62535519 + AT_rich Low_complexity Low_complexity 1 29 0 709 343 69 28 chr13 39339051 39339944 -62533225 - HERVL LTR ERVL -802 4714 3738 274 298 88 33 chr13 39340112 39340327 -62532842 + LTR50 LTR ERVL 458 684 -111 21 0 0 0 chr13 39341145 39341166 -62532003 + AT_rich Low_complexity Low_complexity 1 21 0 1023 179 10 10 chr13 39341202 39341397 -62531772 - L1PA15 LINE L1 -6 6810 6616 14706 232 15 19 chr13 39341402 39346240 -62526929 - L1PA15 LINE L1 -532 6285 1468 268 246 0 15 chr13 39346278 39346343 -62526826 - L1PA15 LINE L1 -5325 1462 1399 1985 143 3 0 chr13 39346943 39347237 -62525932 + AluSx SINE Alu 1 295 -17 30 0 0 0 chr13 39347464 39347494 -62525675 + AT_rich Low_complexity Low_complexity 1 30 0 239 231 10 67 chr13 39348469 39348573 -62524596 + L1M4 LINE L1 2935 3032 -3114 588 285 78 0 chr13 39348631 39348873 -62524296 + L1M4 LINE L1 3343 3603 -2543 324 148 0 0 chr13 39349361 39349415 -62523754 - Alu SINE Alu 0 302 249 1873 156 10 3 chr13 39349705 39350007 -62523162 - AluSx SINE Alu -8 304 1 227 217 250 0 chr13 39350720 39350812 -62522357 + MIR SINE MIR 146 260 -2 35 41 0 0 chr13 39352716 39352765 -62520404 + AT_rich Low_complexity Low_complexity 1 49 0 4555 151 64 1 chr13 39352965 39353746 -62519423 - L1PA16 LINE L1 -9 6157 5328 4546 143 45 16 chr13 39353814 39354641 -62518528 + Tigger1 DNA MER2_type 1566 2416 -2 333 0 0 0 chr13 39354643 39354680 -62518489 + (TG)n Simple_repeat Simple_repeat 2 38 0 41 36 0 0 chr13 39354819 39354874 -62518295 + AT_rich Low_complexity Low_complexity 1 55 0 24 67 0 0 chr13 39355796 39355841 -62517328 + AT_rich Low_complexity Low_complexity 1 45 0 282 29 0 0 chr13 39356009 39356044 -62517125 + (TAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 39356442 39356463 -62516706 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 39357021 39357048 -62516121 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 39357148 39357179 -62515990 + AT_rich Low_complexity Low_complexity 1 31 0 2141 168 27 7 chr13 39357477 39358048 -62515121 - L1M1 LINE L1 -687 5618 5035 27 0 0 0 chr13 39358125 39358152 -62515017 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 39358513 39358534 -62514635 + AT_rich Low_complexity Low_complexity 1 21 0 2304 61 7 3 chr13 39358577 39358870 -62514299 + AluY SINE Alu 1 294 -17 24 32 0 0 chr13 39359992 39360023 -62513146 + AT_rich Low_complexity Low_complexity 1 31 0 365 306 106 17 chr13 39360026 39360206 -62512963 - MIR SINE MIR -2 260 65 23 68 0 0 chr13 39360238 39360282 -62512887 + AT_rich Low_complexity Low_complexity 1 44 0 1410 209 207 51 chr13 39360661 39361254 -62511915 - MER76 LTR ERV 0 688 3 407 218 90 64 chr13 39361272 39361460 -62511709 - MIR SINE MIR 0 262 70 21 36 0 0 chr13 39361529 39361557 -62511612 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 39361692 39361719 -62511450 + AT_rich Low_complexity Low_complexity 1 27 0 302 302 39 8 chr13 39361746 39361875 -62511294 + MER110 LTR ERV1 308 440 -51 24 32 0 0 chr13 39363162 39363193 -62509976 + AT_rich Low_complexity Low_complexity 1 31 0 1651 153 68 20 chr13 39363235 39363529 -62509640 + AluSx SINE Alu 3 310 -2 2179 108 0 7 chr13 39364024 39364331 -62508838 - AluSx SINE Alu -7 305 1 22 0 0 0 chr13 39365303 39365325 -62507844 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 39365667 39365691 -62507478 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 39369958 39369982 -62503187 + AT_rich Low_complexity Low_complexity 1 24 0 343 337 58 25 chr13 39370149 39370425 -62502744 + MLT1I LTR MaLR 63 347 -62 29 47 0 0 chr13 39370571 39370614 -62502555 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr13 39371082 39371105 -62502064 + AT_rich Low_complexity Low_complexity 1 23 0 214 321 25 12 chr13 39372589 39372670 -62500499 - MIR SINE MIR -6 256 175 1388 236 44 93 chr13 39374296 39374888 -62498281 + MLT1F1 LTR MaLR 5 567 0 25 31 0 0 chr13 39375379 39375411 -62497758 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr13 39376485 39376510 -62496659 + AT_rich Low_complexity Low_complexity 1 25 0 609 319 89 35 chr13 39376609 39377101 -62496068 - HAL1 LINE L1 -176 2331 1813 850 243 76 62 chr13 39377299 39377747 -62495422 + MLT1C LTR MaLR 5 458 -9 762 339 96 50 chr13 39377761 39378278 -62494891 - HAL1 LINE L1 -914 1593 1101 3725 78 19 13 chr13 39378278 39378805 -62494364 - L1PA13 LINE L1 -8 6155 5626 762 339 96 50 chr13 39378805 39379304 -62493865 - HAL1 LINE L1 -1406 1101 530 27 29 0 0 chr13 39379785 39379819 -62493350 + AT_rich Low_complexity Low_complexity 1 34 0 484 295 57 22 chr13 39379949 39380176 -62492993 - L1MB8 LINE L1 -3 6175 5941 2087 98 3 0 chr13 39380178 39380474 -62492695 + L1PA13 LINE L1 5863 6159 -4 333 314 25 25 chr13 39381386 39381507 -62491662 + L3 LINE CR1 597 717 -860 213 303 92 34 chr13 39382178 39382297 -62490872 + MIR SINE MIR 127 252 -10 1524 305 211 39 chr13 39382475 39384432 -62488737 - L2 LINE L2 -13 3300 994 218 400 0 15 chr13 39384788 39384918 -62488251 - L2 LINE L2 -2997 317 190 27 0 0 0 chr13 39384939 39384966 -62488203 + AT_rich Low_complexity Low_complexity 1 27 0 1122 335 10 5 chr13 39384981 39385378 -62487791 - LTR16A LTR ERVL 0 450 52 26 0 0 0 chr13 39385789 39385815 -62487354 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 39387112 39387134 -62486035 + AT_rich Low_complexity Low_complexity 1 22 0 233 397 71 7 chr13 39387151 39387292 -62485877 + L2 LINE L2 3101 3250 -22 369 0 0 0 chr13 39387389 39387430 -62485739 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr13 39389217 39389238 -62483931 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 39389859 39389883 -62483286 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr13 39390828 39390862 -62482307 + AT_rich Low_complexity Low_complexity 1 34 0 31 44 0 0 chr13 39391464 39391509 -62481660 + AT_rich Low_complexity Low_complexity 1 45 0 206 174 22 0 chr13 39391649 39391695 -62481474 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1015 290 69 36 chr13 39391711 39392177 -62480992 + L1MC3 LINE L1 94 574 -5471 240 246 42 34 chr13 39392165 39392283 -62480886 + L1MC3 LINE L1 2486 2604 -3960 * 4410 276 66 41 chr13 39392301 39393406 -62479763 + L1MC3 LINE L1 2650 3726 -2838 692 199 0 8 chr13 39393406 39393537 -62479632 - FLAM_C SINE Alu -2 131 2 4410 276 66 41 chr13 39393537 39394948 -62478221 + L1MC3 LINE L1 3726 5229 -1335 6942 216 18 6 chr13 39394951 39397659 -62475510 + L1PA16 LINE L1 1 5520 -1329 1474 144 16 23 chr13 39397659 39397916 -62475253 - THE1C LTR MaLR 0 375 121 1255 112 51 10 chr13 39397904 39398101 -62475068 - THE1C LTR MaLR -170 205 1 * 8797 146 60 28 chr13 39398101 39399631 -62473538 - THE1C-int LTR MaLR 0 1580 2 904 151 27 43 chr13 39399632 39399817 -62473352 - THE1C LTR MaLR 0 375 194 1855 149 55 32 chr13 39399821 39400167 -62473002 + THE1B LTR MaLR 1 457 0 945 188 10 56 chr13 39400173 39400370 -62472799 - THE1C LTR MaLR -187 188 1 4191 210 43 8 chr13 39400372 39401668 -62471501 + L1PA16 LINE L1 5518 6860 -9 1360 236 36 55 chr13 39401696 39402654 -62470515 + L1MC3 LINE L1 5220 8186 -17 359 275 44 150 chr13 39402839 39402990 -62470179 + MIR SINE MIR 18 129 -133 1960 145 3 0 chr13 39402990 39403286 -62469883 + AluSp SINE Alu 1 297 -16 359 275 44 150 chr13 39403286 39403407 -62469762 + MIR SINE MIR 129 261 -1 2320 99 3 0 chr13 39405092 39405396 -62467773 + AluSx SINE Alu 1 305 -7 254 176 54 14 chr13 39405444 39405518 -62467651 - MLT1L LTR MaLR -37 578 502 2273 110 0 0 chr13 39405939 39406238 -62466931 - AluSx SINE Alu -13 299 1 1247 295 14 19 chr13 39406263 39406633 -62466536 + MLT1E3 LTR MaLR 257 624 0 253 226 0 0 chr13 39406853 39406915 -62466254 + T-rich Low_complexity Low_complexity 1 62 0 1541 194 3 7 chr13 39406918 39407229 -62465940 + AluJo SINE Alu 1 310 0 29 0 0 0 chr13 39407346 39407375 -62465794 + AT_rich Low_complexity Low_complexity 1 29 0 266 326 37 22 chr13 39408948 39409083 -62464086 + MLT1I LTR MaLR 70 206 -203 243 135 0 0 chr13 39409285 39409322 -62463847 + MLT1I LTR MaLR 371 407 -2 229 286 41 41 chr13 39409702 39409800 -62463369 - L2 LINE L2 0 3313 3216 201 321 155 4 chr13 39410760 39410883 -62462286 + MIR SINE MIR 20 157 -63 2026 147 0 0 chr13 39411248 39411541 -62461628 + AluSx SINE Alu 1 293 -19 216 0 0 0 chr13 39411901 39411925 -62461244 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 272 352 76 0 chr13 39411930 39412035 -62461134 - L2 LINE L2 -8 3305 3193 821 304 68 9 chr13 39412815 39413283 -62459886 - MLT1F LTR MaLR 0 567 1 547 359 45 0 chr13 39413935 39414155 -62459014 + LTR16A LTR ERVL 108 337 -113 1429 351 57 32 chr13 39414282 39415308 -62457861 + HERV16 LTR ERVL 52 1102 -3894 1057 307 52 28 chr13 39415663 39416165 -62457004 + HERV16 LTR ERVL 1574 2087 -2909 22 0 0 0 chr13 39417329 39417351 -62455818 + AT_rich Low_complexity Low_complexity 1 22 0 271 143 48 0 chr13 39417395 39417458 -62455711 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 1325 191 29 0 chr13 39417527 39417773 -62455396 - MSTA LTR MaLR -17 411 159 1871 108 0 0 chr13 39417774 39418051 -62455118 - L1PA7 LINE L1 -1279 4867 4591 * 6514 81 20 0 chr13 39418047 39419251 -62453918 + L1PA7 LINE L1 4893 6124 -30 414 0 0 0 chr13 39419261 39419307 -62453862 + (TA)n Simple_repeat Simple_repeat 2 47 0 769 139 34 19 chr13 39419307 39419453 -62453716 - MSTA LTR MaLR -294 134 1 5517 119 7 29 chr13 39419596 39421384 -62451785 + L1PA15 LINE L1 4410 6164 -1 23 0 0 0 chr13 39421858 39421881 -62451288 + AT_rich Low_complexity Low_complexity 1 23 0 276 379 33 8 chr13 39422224 39422464 -62450705 + L2 LINE L2 2184 2429 -885 210 305 0 67 chr13 39422839 39422944 -62450225 - L2 LINE L2 -9 3304 3207 819 150 8 0 chr13 39423098 39423218 -62449951 - FLAM_C SINE Alu -19 124 4 2200 107 0 0 chr13 39423504 39423804 -62449365 + AluSc SINE Alu 1 300 -9 59 15 0 0 chr13 39424224 39424290 -62448879 + AT_rich Low_complexity Low_complexity 1 66 0 571 278 23 0 chr13 39424471 39424604 -62448565 + LTR16A LTR ERVL 50 185 -265 1069 342 40 27 chr13 39424627 39425177 -62447992 + HERV16 LTR ERVL 917 1473 -3523 234 155 19 117 chr13 39425250 39425353 -62447816 + MER52A LTR ERV1 1 93 -1662 1525 263 44 21 chr13 39425354 39425829 -62447340 + HERV16 LTR ERVL 1724 2209 -2787 218 191 0 16 chr13 39426127 39426190 -62446979 + (TA)n Simple_repeat Simple_repeat 2 63 0 34 72 0 0 chr13 39426215 39426284 -62446885 + AT_rich Low_complexity Low_complexity 1 69 0 2392 178 8 31 chr13 39426335 39426823 -62446346 + L1PA16 LINE L1 5683 6159 -7 1047 214 42 70 chr13 39426855 39427256 -62445913 - MER92B LTR ERV1 -54 582 193 644 338 62 8 chr13 39427766 39428006 -62445163 - MIR SINE MIR -3 259 7 21 0 0 0 chr13 39428414 39428435 -62444734 + AT_rich Low_complexity Low_complexity 1 21 0 845 224 60 104 chr13 39428795 39429179 -62443990 + MLT1A2 LTR MaLR 4 370 -4 202 294 118 0 chr13 39429620 39429705 -62443464 + MIR SINE MIR 64 158 -104 29 0 0 0 chr13 39430034 39430063 -62443106 + AT_rich Low_complexity Low_complexity 1 29 0 259 241 17 0 chr13 39430296 39430354 -62442815 + MER91B DNA MER1_type 14 72 -118 676 262 46 119 chr13 39430376 39430707 -62442462 - L2 LINE L2 -2315 999 706 1889 146 14 3 chr13 39430707 39431001 -62442168 + AluSx SINE Alu 1 297 -15 676 262 46 119 chr13 39431001 39431104 -62442065 - L2 LINE L2 -2608 706 597 335 220 34 11 chr13 39431196 39431317 -62441852 + MLT1D LTR MaLR 47 140 -269 420 323 101 16 chr13 39431405 39431783 -62441386 + L1M4 LINE L1 3932 4341 -1805 296 290 62 28 chr13 39431806 39431951 -62441218 + L1ME2 LINE L1 5989 6138 -26 225 65 0 0 chr13 39432239 39432270 -62440899 + (CA)n Simple_repeat Simple_repeat 1 31 0 629 252 189 25 chr13 39432580 39432898 -62440271 + MLT1D LTR MaLR 109 478 -27 370 372 85 45 chr13 39432901 39433326 -62439843 - L2 LINE L2 -396 2918 2477 21 57 0 0 chr13 39433435 39433470 -62439699 + AT_rich Low_complexity Low_complexity 1 35 0 2168 138 0 0 chr13 39433776 39434088 -62439081 + AluSx SINE Alu 1 312 0 277 145 32 0 chr13 39434948 39435010 -62438159 + GA-rich Low_complexity Low_complexity 3 66 0 1403 283 16 79 chr13 39435093 39435640 -62437529 - LTR40a LTR ERVL 0 519 7 1785 130 68 92 chr13 39436067 39436250 -62436919 - THE1B LTR MaLR -2 362 176 2059 98 31 0 chr13 39436250 39436536 -62436633 - AluY SINE Alu -16 295 1 1785 130 68 92 chr13 39436536 39436568 -62436601 - THE1B LTR MaLR -188 176 145 2162 127 3 0 chr13 39436568 39436875 -62436294 + AluSx SINE Alu 3 310 -2 1785 130 68 92 chr13 39436875 39437028 -62436141 - THE1B LTR MaLR -219 145 2 10935 105 9 7 chr13 39437029 39438238 -62434931 - THE1B-int LTR MaLR 0 1580 365 2777 7 0 0 chr13 39438238 39438543 -62434626 + AluYa5 SINE Alu 1 305 -6 10935 105 9 7 chr13 39438543 39438909 -62434260 - THE1B-int LTR MaLR -1215 365 1 1970 126 73 56 chr13 39438909 39438951 -62434218 - THE1B LTR MaLR 0 364 324 2206 95 16 0 chr13 39438951 39439255 -62433914 + AluSp SINE Alu 1 309 -4 1970 126 73 56 chr13 39439255 39439570 -62433599 - THE1B LTR MaLR -40 324 1 24 32 0 0 chr13 39439571 39439602 -62433567 + AT_rich Low_complexity Low_complexity 1 31 0 248 264 39 45 chr13 39440101 39440256 -62432913 - L1MC4 LINE L1 -197 7845 7692 1394 166 24 3 chr13 39440462 39440757 -62432412 + L1MA9 LINE L1 6012 6312 0 1090 294 81 18 chr13 39440841 39441395 -62431774 - L1ME3A LINE L1 -214 5956 5368 409 320 91 20 chr13 39441409 39441662 -62431507 - L1ME3A LINE L1 -836 5310 5040 350 275 122 18 chr13 39441754 39441976 -62431193 - L1ME3A LINE L1 -1289 4857 4613 333 289 113 16 chr13 39441983 39442076 -62431093 - L1ME3A LINE L1 -1599 4547 4465 252 0 0 0 chr13 39442076 39442104 -62431065 + (TA)n Simple_repeat Simple_repeat 2 29 0 2188 112 3 0 chr13 39442104 39442398 -62430771 - AluSg SINE Alu -15 295 1 333 289 113 16 chr13 39442398 39442497 -62430672 - L1ME3A LINE L1 -1680 4466 4335 28 48 0 0 chr13 39442655 39442697 -62430472 + AT_rich Low_complexity Low_complexity 1 42 0 5014 183 19 11 chr13 39442757 39443811 -62429358 + L1MA7 LINE L1 5196 6255 -36 21 0 0 0 chr13 39444078 39444099 -62429070 + AT_rich Low_complexity Low_complexity 1 21 0 1591 156 18 18 chr13 39444345 39444655 -62428514 - AluSq SINE Alu 0 310 1 1368 102 14 9 chr13 39444690 39444905 -62428264 - L1PA14 LINE L1 0 6161 5946 1785 240 70 26 chr13 39445017 39445600 -62427569 - L1MC3 LINE L1 -8 7777 7169 1451 215 109 25 chr13 39445611 39446095 -62427074 - L1MC3 LINE L1 -699 7086 6562 375 196 59 0 chr13 39446141 39446243 -62426926 - L1M LINE L1 -966 5378 5271 1682 263 44 58 chr13 39446259 39447167 -62426002 - L1M4 LINE L1 -1697 4449 3555 203 351 91 0 chr13 39447376 39447453 -62425716 + L2 LINE L2 3178 3261 -11 329 290 111 0 chr13 39447797 39447959 -62425210 - LTR37B LTR ERV1 -10 458 279 593 221 101 7 chr13 39447962 39448111 -62425058 - LTR40b LTR ERVL -2 460 298 237 262 33 0 chr13 39448173 39448234 -62424935 - MER67D LTR ERV1 -3 511 449 953 231 74 42 chr13 39448367 39448628 -62424541 - MER67D LTR ERV1 -78 436 192 2134 117 0 3 chr13 39448628 39448926 -62424243 + AluSx SINE Alu 2 298 -14 953 231 74 42 chr13 39448926 39448955 -62424214 - MER67D LTR ERV1 -322 192 165 284 317 0 0 chr13 39448956 39449031 -62424138 + G-rich Low_complexity Low_complexity 1 78 -26 3672 96 4 2 chr13 39449031 39449541 -62423628 - MER9 LTR ERVK 0 511 1 284 317 0 0 chr13 39449541 39449569 -62423600 + G-rich Low_complexity Low_complexity 77 104 0 728 206 0 7 chr13 39449570 39449725 -62423444 - MER67D LTR ERV1 -358 156 3 598 221 84 0 chr13 39449780 39449949 -62423220 - LTR40a LTR ERVL -279 183 3 2266 161 87 79 chr13 39449968 39450542 -62422627 + MER4A LTR ERV1 1 584 -80 2056 123 0 0 chr13 39450542 39450857 -62422312 - AluSc SINE Alu 0 317 3 2266 161 87 79 chr13 39450857 39450939 -62422230 + MER4A LTR ERV1 584 664 0 886 199 75 140 chr13 39451405 39452043 -62421126 - MER4A LTR ERV1 -2 697 79 195 42 0 0 chr13 39452043 39452067 -62421102 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 886 199 75 140 chr13 39452067 39452142 -62421027 - MER4A LTR ERV1 -620 79 1 788 271 158 17 chr13 39452291 39452638 -62420531 - MSTD LTR MaLR 0 396 1 582 217 0 8 chr13 39452954 39453074 -62420095 - AluJb SINE Alu -15 297 179 655 154 37 0 chr13 39453542 39453678 -62419491 + L1MA4A LINE L1 6160 6300 -3 1510 192 18 39 chr13 39453821 39454155 -62419014 - LTR47B LTR ERVL 0 443 117 1096 124 36 26 chr13 39454124 39454318 -62418851 - LTR47A LTR ERVL -256 196 1 * 31 44 0 0 chr13 39454511 39454556 -62418613 + AT_rich Low_complexity Low_complexity 1 45 0 551 223 26 104 chr13 39454807 39455000 -62418169 - MER4C LTR ERV1 -12 453 276 722 209 10 94 chr13 39455554 39455755 -62417414 + MER20 DNA MER1_type 36 219 0 9302 187 17 15 chr13 39456862 39458579 -62414590 + L1MA3 LINE L1 9 1728 -5837 334 220 44 11 chr13 39458574 39458665 -62414504 + L1MA3 LINE L1 5589 5682 -1883 * 16213 184 32 12 chr13 39458664 39458734 -62414435 + L1MA2 LINE L1 22 89 -7634 246 32 0 0 chr13 39458734 39458765 -62414404 + (CA)n Simple_repeat Simple_repeat 2 32 0 16213 184 32 12 chr13 39458765 39460600 -62412569 + L1MA2 LINE L1 89 1887 -5836 2250 86 10 0 chr13 39460600 39460891 -62412278 + AluSc SINE Alu 1 294 -15 16213 184 32 12 chr13 39460891 39466260 -62406909 + L1MA2 LINE L1 1887 7718 -5 6090 145 14 83 chr13 39466279 39468260 -62404909 + L1MA3 LINE L1 5676 7473 -251 2379 79 0 3 chr13 39468260 39468563 -62404606 + AluY SINE Alu 1 302 -9 6090 145 14 83 chr13 39468563 39468798 -62404371 + L1MA3 LINE L1 7473 7723 -1 24 32 0 0 chr13 39470839 39470870 -62402299 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 39471291 39471312 -62401857 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 39471405 39471429 -62401740 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 39473064 39473092 -62400077 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 39473281 39473302 -62399867 + AT_rich Low_complexity Low_complexity 1 21 0 383 273 23 26 chr13 39474540 39474710 -62398459 - L1MD2 LINE L1 -1 7803 6201 2723 117 9 26 chr13 39474742 39475196 -62397973 - L1PA13 LINE L1 0 6163 5718 252 175 53 18 chr13 39475197 39475254 -62397915 - L1MD2 LINE L1 -182 6177 6119 2121 113 3 3 chr13 39475332 39475625 -62397544 - AluSc SINE Alu -12 297 5 1967 149 0 3 chr13 39475638 39475934 -62397235 - AluSg SINE Alu -15 295 1 1309 195 27 37 chr13 39475983 39476311 -62396858 + L1MA8 LINE L1 5964 6288 -3 779 206 56 6 chr13 39477178 39477338 -62395831 - AluJb SINE Alu -15 297 130 250 317 64 32 chr13 39477394 39477675 -62395494 - HAL1b LINE L1 -838 510 221 1749 124 49 114 chr13 39477811 39478068 -62395101 - L1MA5 LINE L1 0 6300 6048 262 62 0 0 chr13 39478068 39478100 -62395069 - U2 snRNA snRNA -155 33 2 1749 124 49 114 chr13 39478100 39478239 -62394930 - L1MA5 LINE L1 -252 6048 5901 261 128 0 0 chr13 39479731 39479778 -62393391 + (TA)n Simple_repeat Simple_repeat 2 48 0 1996 118 0 27 chr13 39479838 39480135 -62393034 + AluSg SINE Alu 1 289 -21 884 321 56 48 chr13 39480792 39481349 -62391820 - MLT2E LTR ERVL -52 576 16 840 315 40 52 chr13 39482034 39482776 -62390393 + L2 LINE L2 2580 3313 0 26 93 0 0 chr13 39482825 39482900 -62390269 + AT_rich Low_complexity Low_complexity 1 75 0 657 245 20 0 chr13 39484017 39484168 -62389001 + L1MC1 LINE L1 6179 6332 -1 21 36 0 0 chr13 39484647 39484675 -62388494 + AT_rich Low_complexity Low_complexity 1 28 0 305 320 115 33 chr13 39485396 39485518 -62387651 + L2 LINE L2 3141 3272 0 26 19 6 0 chr13 39485663 39485728 -62387441 + AT_rich Low_complexity Low_complexity 1 33 0 2386 269 60 98 chr13 39486061 39487575 -62385594 + L1M4 LINE L1 5 1460 -5082 3004 207 31 15 chr13 39487596 39488276 -62384893 + L1MB5 LINE L1 5484 6174 0 2173 88 0 14 chr13 39489609 39489892 -62383277 + AluSg SINE Alu 14 292 -18 355 276 184 12 chr13 39489980 39490143 -62383026 + L2 LINE L2 3123 3313 0 21 0 0 0 chr13 39493610 39493631 -62379538 + AT_rich Low_complexity Low_complexity 1 21 0 497 273 122 42 chr13 39494240 39494739 -62378430 + L1M4 LINE L1 2411 2949 -3876 * 1271 239 16 10 chr13 39494738 39495047 -62378122 - L1M2 LINE L1 -535 5777 5467 405 125 88 0 chr13 39495047 39495127 -62378042 + L1MA8 LINE L1 6050 6136 -155 * 839 176 6 18 chr13 39495126 39495291 -62377878 - L1M2 LINE L1 -677 5491 5329 1523 231 25 39 chr13 39495292 39495782 -62377387 + L1MA9 LINE L1 5785 6267 -45 801 288 89 6 chr13 39496002 39496529 -62376640 + L1M4 LINE L1 3391 3961 -2683 391 216 45 11 chr13 39496536 39496624 -62376545 + MLT-int LTR MaLR 1321 1411 -324 2156 216 108 58 chr13 39496630 39497533 -62375636 - MLT-int LTR MaLR -171 1564 533 957 280 40 13 chr13 39497565 39497937 -62375232 - L1MA9 LINE L1 -38 6274 5893 2568 250 35 44 chr13 39497968 39499438 -62373731 - L1 LINE L1 -3210 3957 2495 786 311 8 12 chr13 39499437 39499688 -62373481 - L1 LINE L1 -5550 1618 1369 * 2139 307 95 33 chr13 39499836 39501135 -62372034 - L1 LINE L1 -5789 1379 1 1754 238 59 30 chr13 39501133 39501662 -62371507 - MLT1A1-int LTR MaLR -1191 544 1 * 254 260 0 52 chr13 39501680 39501757 -62371412 - MLT1A1-int LTR MaLR -1294 77 5 877 235 118 62 chr13 39501761 39502013 -62371156 - MLT1A1 LTR MaLR 0 365 143 1494 180 7 39 chr13 39502013 39502318 -62370851 - AluSx SINE Alu -17 295 1 877 235 118 62 chr13 39502318 39502470 -62370699 - MLT1A1 LTR MaLR -222 143 1 185 420 51 6 chr13 39502500 39502657 -62370512 - L2 LINE L2 -243 3029 2866 195 357 31 10 chr13 39502812 39502910 -62370259 - L2 LINE L2 -601 2713 2614 307 369 8 23 chr13 39502985 39503115 -62370054 - L2 LINE L2 -8 3264 3137 2197 42 4 0 chr13 39504000 39504260 -62368909 - AluY SINE Alu -37 274 14 6320 101 9 7 chr13 39504269 39505182 -62367987 - L1PA10 LINE L1 0 6168 5254 317 171 57 0 chr13 39505179 39505249 -62367920 + L1P LINE L1 3231 3304 -2842 * 2540 41 3 0 chr13 39505242 39505562 -62367607 + L1P LINE L1 4953 5273 -873 997 111 238 16 chr13 39505573 39505762 -62367407 + L1PA7 LINE L1 5923 6153 -1 * 3379 161 5 67 chr13 39505750 39506730 -62366439 + L1P LINE L1 3285 4125 -2021 281 188 0 0 chr13 39507283 39507347 -62365822 - L1MB7 LINE L1 -19 6165 6102 23 78 0 0 chr13 39507477 39507528 -62365641 + AT_rich Low_complexity Low_complexity 1 51 0 33 56 0 0 chr13 39508037 39508091 -62365078 + AT_rich Low_complexity Low_complexity 1 54 0 8622 240 37 31 chr13 39508145 39509392 -62363777 - L1MC3 LINE L1 -33 7752 6514 1795 120 4 0 chr13 39509392 39509651 -62363518 - AluSx SINE Alu -52 260 1 8622 240 37 31 chr13 39509651 39510612 -62362557 - L1MC3 LINE L1 -1271 6514 5514 1923 154 55 0 chr13 39510612 39510956 -62362213 - L1PB3 LINE L1 -1 6153 5791 8622 240 37 31 chr13 39510956 39511805 -62361364 - L1MC3 LINE L1 -2271 5514 4672 1102 264 93 11 chr13 39511775 39511857 -62361312 - L1MC3 LINE L1 -1988 4158 4084 * 9848 149 6 2 chr13 39511857 39514338 -62358831 - L1PA10 LINE L1 -2 6166 3675 1102 264 93 11 chr13 39514338 39514718 -62358451 - L1MC3 LINE L1 -2062 4084 3658 21 57 0 0 chr13 39515535 39515570 -62357599 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr13 39516039 39516072 -62357097 + AT_rich Low_complexity Low_complexity 1 33 0 348 24 0 0 chr13 39516152 39516193 -62356976 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 182 289 33 66 chr13 39516902 39517023 -62356146 - MIR SINE MIR -98 164 48 269 87 0 22 chr13 39519308 39519354 -62353815 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 221 163 20 0 chr13 39519355 39519404 -62353765 + GA-rich Low_complexity Low_complexity 1 50 0 377 222 0 11 chr13 39519449 39519539 -62353630 - L1M LINE L1 -765 5401 5313 21 57 0 0 chr13 39519561 39519596 -62353573 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 39519751 39519771 -62353398 + (A)n Simple_repeat Simple_repeat 1 20 0 697 185 0 30 chr13 39519840 39519975 -62353194 - L1M4 LINE L1 -1983 4232 4102 1162 287 67 40 chr13 39519985 39521086 -62352083 - L1MEc LINE L1 -3444 2771 1684 1422 277 93 48 chr13 39521087 39521697 -62351472 - MER76 LTR ERV -30 658 21 1011 267 91 16 chr13 39521713 39522338 -62350831 - L1MEc LINE L1 -4724 1672 1001 342 219 15 80 chr13 39522389 39522471 -62350698 - L1MEc LINE L1 -5502 894 823 2168 78 13 33 chr13 39522471 39522777 -62350392 - AluY SINE Alu -10 301 2 342 219 15 80 chr13 39522777 39522831 -62350338 - L1MEc LINE L1 -5573 823 767 279 161 36 18 chr13 39522869 39522925 -62350244 + MER20 DNA MER1_type 163 219 0 295 290 20 0 chr13 39522926 39523026 -62350143 + L1MEc LINE L1 633 734 -5662 33 66 0 0 chr13 39523147 39523208 -62349961 + AT_rich Low_complexity Low_complexity 1 61 0 534 222 111 18 chr13 39523288 39523513 -62349656 + Charlie7 DNA MER1_type 1591 1836 -776 515 238 138 32 chr13 39523543 39523804 -62349365 + Charlie7 DNA MER1_type 2169 2477 -135 2011 132 0 0 chr13 39523804 39524110 -62349059 - AluSx SINE Alu 0 309 4 515 238 138 32 chr13 39524110 39524188 -62348981 + Charlie7 DNA MER1_type 2477 2545 -67 226 235 0 82 chr13 39524193 39524291 -62348878 - L1MC4 LINE L1 -1339 6703 6614 * 276 250 23 0 chr13 39524215 39524303 -62348866 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr13 39524529 39524552 -62348617 + AT_rich Low_complexity Low_complexity 1 23 0 346 337 79 20 chr13 39526437 39526639 -62346530 + L2 LINE L2 2034 2247 -1067 783 261 28 19 chr13 39527797 39528008 -62345161 + MER20 DNA MER1_type 6 218 -1 23 33 0 0 chr13 39528722 39528752 -62344417 + AT_rich Low_complexity Low_complexity 1 30 0 218 260 29 48 chr13 39528831 39528935 -62344234 - L2 LINE L2 -90 3223 3122 409 297 68 106 chr13 39529049 39529298 -62343871 - L2 LINE L2 -250 3063 2806 1967 108 9 52 chr13 39529298 39529623 -62343546 + AluSx SINE Alu 1 311 -1 409 297 68 106 chr13 39529623 39530015 -62343154 - L2 LINE L2 -507 2806 2451 2213 75 36 16 chr13 39530640 39530945 -62342224 + AluY SINE Alu 1 311 0 8417 207 12 20 chr13 39531078 39533199 -62339970 - L1P LINE L1 -811 5335 3229 4494 142 9 9 chr13 39533200 39533948 -62339221 + L1PA15 LINE L1 5371 6118 -47 2515 63 0 0 chr13 39534255 39534558 -62338611 - AluY SINE Alu -8 303 1 201 169 34 17 chr13 39535553 39535612 -62337557 + (TTTAA)n Simple_repeat Simple_repeat 5 64 0 212 103 51 0 chr13 39536079 39536118 -62337051 + (CATA)n Simple_repeat Simple_repeat 3 43 0 272 290 59 24 chr13 39536207 39536376 -62336793 - L1M4 LINE L1 -2168 3978 3804 190 408 115 27 chr13 39537421 39537681 -62335488 + L2 LINE L2 2987 3269 -3 22 35 0 0 chr13 39537753 39537782 -62335387 + AT_rich Low_complexity Low_complexity 1 29 0 1685 220 46 23 chr13 39538128 39538560 -62334609 - L1MA10 LINE L1 -2 6332 5891 447 183 58 8 chr13 39539731 39539851 -62333318 - THE1C LTR MaLR -1 374 249 1779 153 0 13 chr13 39540335 39540635 -62332534 - AluSx SINE Alu -16 296 1 559 288 38 38 chr13 39540635 39540847 -62332322 - MIR SINE MIR -10 252 41 470 248 0 9 chr13 39540965 39541078 -62332091 + MER5A DNA MER1_type 2 113 -76 2024 111 0 0 chr13 39542655 39542957 -62330212 + AluSg SINE Alu 1 302 0 2145 125 0 0 chr13 39544105 39544400 -62328769 - AluSx SINE Alu -17 295 1 21 0 0 0 chr13 39544410 39544431 -62328738 + AT_rich Low_complexity Low_complexity 1 21 0 2044 201 77 64 chr13 39544688 39544751 -62328418 - MLT2B3 LTR ERVL 0 554 493 194 0 39 0 chr13 39544751 39544777 -62328392 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 2044 201 77 64 chr13 39544777 39545260 -62327909 - MLT2B3 LTR ERVL -61 493 1 11166 189 88 35 chr13 39545351 39547696 -62325473 + L1M1 LINE L1 10 2478 -5087 6582 159 10 51 chr13 39547697 39548598 -62324571 + L1M1 LINE L1 5410 6265 -1376 303 132 19 0 chr13 39548598 39548651 -62324518 - MADE1 DNA Mariner -25 55 2 6582 159 10 51 chr13 39548651 39549260 -62323909 + L1M1 LINE L1 6265 6898 -743 5691 109 8 2 chr13 39549262 39550107 -62323062 + L1PB1 LINE L1 5302 6151 0 930 317 162 31 chr13 39550136 39550808 -62322361 - L2 LINE L2 -1149 2165 1406 709 181 17 17 chr13 39550987 39551164 -62322005 + L1MA1 LINE L1 6126 6302 0 21 36 0 0 chr13 39551164 39551192 -62321977 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 39551813 39551841 -62321328 + AT_rich Low_complexity Low_complexity 1 28 0 438 95 81 0 chr13 39552234 39552308 -62320861 - MADE1 DNA Mariner 0 80 1 332 215 61 68 chr13 39553677 39553840 -62319329 - MER104 DNA Tc2 -5 175 14 2151 117 0 3 chr13 39554304 39554602 -62318567 - AluSx SINE Alu -14 298 2 2160 66 0 14 chr13 39554815 39555128 -62318041 + AluY SINE Alu 1 309 0 243 198 94 31 chr13 39555159 39555255 -62317914 - L1M4 LINE L1 -1718 4428 4327 405 299 76 12 chr13 39555285 39555587 -62317582 - MERVL LTR ERVL -2743 2742 2422 568 359 0 15 chr13 39555821 39556016 -62317153 - MERVL LTR ERVL -3552 1444 1253 412 374 53 0 chr13 39556907 39557169 -62316000 - LTR16B LTR ERVL -4 460 185 1289 115 65 5 chr13 39557196 39557396 -62315773 - LTR12 LTR ERV1 -133 581 370 332 151 57 85 chr13 39557396 39557484 -62315685 - LTR30 LTR ERV1 -75 624 229 3571 140 69 46 chr13 39557485 39558424 -62314745 - pTR5 LTR ERV1 -410 2028 735 207 98 49 24 chr13 39559881 39559922 -62313247 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr13 39560179 39560208 -62312961 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 39561209 39561233 -62311936 + AT_rich Low_complexity Low_complexity 1 24 0 1710 120 12 100 chr13 39561286 39561627 -62311542 - AluSx SINE Alu -1 311 1 26 64 0 0 chr13 39561728 39561775 -62311394 + AT_rich Low_complexity Low_complexity 1 47 0 328 271 37 17 chr13 39562364 39562534 -62310635 + L1M4 LINE L1 101 498 -6357 459 276 78 12 chr13 39562909 39563242 -62309927 + L1M4 LINE L1 4016 4370 -2587 1788 149 60 41 chr13 39563304 39563672 -62309497 - THE1C LTR MaLR 0 375 1 860 325 40 27 chr13 39563964 39564339 -62308830 + L2 LINE L2 1859 2238 -1076 332 425 18 4 chr13 39564752 39564980 -62308189 - MER115 DNA AcHobo -440 253 23 242 414 44 20 chr13 39565070 39565273 -62307896 + L2 LINE L2 2733 2940 -374 662 232 72 57 chr13 39565273 39565553 -62307616 + L1M4b LINE L1 1298 1591 -4899 568 340 59 31 chr13 39565566 39565922 -62307247 + L1M4b LINE L1 1648 2013 -4946 1101 135 41 86 chr13 39567284 39567379 -62305790 - Tigger7 DNA MER2_type 0 2491 2393 225 0 0 0 chr13 39567379 39567404 -62305765 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 324 0 0 0 chr13 39567403 39567439 -62305730 + (CA)n Simple_repeat Simple_repeat 2 37 0 1101 135 41 86 chr13 39567404 39567610 -62305559 - Tigger7 DNA MER2_type -98 2393 2237 204 161 48 16 chr13 39567858 39567920 -62305249 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 1699 264 98 22 chr13 39567928 39568736 -62304433 - L1ME2 LINE L1 0 6558 5690 1082 303 76 40 chr13 39568786 39570220 -62302949 - L1ME2 LINE L1 -3060 3480 2024 225 0 0 0 chr13 39570257 39570282 -62302887 + (A)n Simple_repeat Simple_repeat 1 25 0 240 185 0 0 chr13 39570322 39570376 -62302793 + (TATG)n Simple_repeat Simple_repeat 2 55 0 542 301 62 39 chr13 39570376 39570761 -62302408 - L1ME2 LINE L1 -4577 1963 1570 4917 182 54 24 chr13 39570773 39571938 -62301231 - L1MC1 LINE L1 -18 6315 5122 673 278 85 67 chr13 39571967 39572650 -62300519 - L1ME2 LINE L1 -5003 1527 924 21 82 0 0 chr13 39573837 39573886 -62299283 + AT_rich Low_complexity Low_complexity 1 49 0 32 67 0 0 chr13 39574012 39574072 -62299097 + AT_rich Low_complexity Low_complexity 1 60 0 623 289 127 3 chr13 39574202 39574517 -62298652 - L1ME1 LINE L1 -57 6109 5756 1417 314 112 28 chr13 39574529 39575554 -62297615 + L2 LINE L2 2182 3295 -18 27 92 0 0 chr13 39575640 39575716 -62297453 + AT_rich Low_complexity Low_complexity 1 76 0 21 71 0 0 chr13 39576288 39576330 -62296839 + AT_rich Low_complexity Low_complexity 1 42 0 910 295 73 36 chr13 39577594 39578238 -62294931 + L1MEc LINE L1 1127 1794 -4602 276 30 0 0 chr13 39578508 39578541 -62294628 + (TG)n Simple_repeat Simple_repeat 2 34 0 242 226 17 0 chr13 39578541 39578608 -62294561 + L1ME2 LINE L1 6092 6159 -3 2939 140 32 4 chr13 39579598 39580063 -62293106 - MER1A DNA MER1_type 0 529 52 364 265 28 77 chr13 39580469 39580650 -62292519 - AluSg/x SINE Alu 0 302 131 281 98 0 20 chr13 39580707 39580758 -62292411 + (TA)n Simple_repeat Simple_repeat 2 51 0 267 220 5 58 chr13 39580992 39581100 -62292069 + MLT1J2 LTR MaLR 73 196 -315 440 342 19 6 chr13 39582015 39582173 -62290996 + MLT1I LTR MaLR 110 269 -140 272 233 0 107 chr13 39582231 39582334 -62290835 + MLT1I LTR MaLR 280 371 -38 567 228 112 53 chr13 39582700 39582906 -62290263 - MER58A DNA MER1_type -6 218 1 263 280 32 0 chr13 39583108 39583201 -62289968 + MLT1J2 LTR MaLR 52 147 -303 3087 183 38 8 chr13 39583709 39584360 -62288809 - L1MB1 LINE L1 -4 6185 5515 50 65 0 0 chr13 39584567 39584659 -62288510 + AT_rich Low_complexity Low_complexity 1 92 0 29 60 0 0 chr13 39585352 39585402 -62287767 + AT_rich Low_complexity Low_complexity 1 50 0 211 277 12 24 chr13 39585432 39585515 -62287654 + (TA)n Simple_repeat Simple_repeat 1 82 0 253 374 140 0 chr13 39585932 39586111 -62287058 + L3b LINE CR1 1325 1528 -55 561 258 39 64 chr13 39587168 39587498 -62285671 + L1MC4 LINE L1 7697 8018 -24 30 27 0 0 chr13 39587499 39587536 -62285633 + AT_rich Low_complexity Low_complexity 1 37 0 269 323 193 39 chr13 39587604 39588168 -62285001 - L2 LINE L2 -568 2746 2096 226 283 0 22 chr13 39588171 39588263 -62284906 - L1MC4 LINE L1 -1339 6703 6614 * 271 307 0 0 chr13 39588246 39588334 -62284835 + L1MC4 LINE L1 6615 6702 -1340 261 211 0 0 chr13 39588336 39588393 -62284776 + (CA)n Simple_repeat Simple_repeat 2 58 0 3364 257 51 15 chr13 39588474 39590509 -62282660 + L1MB8 LINE L1 4066 6172 -6 239 415 42 4 chr13 39590509 39590750 -62282419 - L2 LINE L2 -1310 2004 1755 1573 152 48 24 chr13 39590846 39591182 -62281987 - L1MA8 LINE L1 -5 6286 5943 198 373 80 20 chr13 39591272 39591422 -62281747 - L2 LINE L2 -1760 1554 1396 21 0 0 0 chr13 39591514 39591535 -62281634 + AT_rich Low_complexity Low_complexity 1 21 0 188 273 0 36 chr13 39591537 39591592 -62281577 - L2 LINE L2 -2047 1267 1215 1784 122 0 85 chr13 39592443 39592762 -62280407 + AluSx SINE Alu 3 294 -18 365 0 0 22 chr13 39592788 39592834 -62280335 + (TA)n Simple_repeat Simple_repeat 1 45 0 229 366 36 27 chr13 39592851 39593072 -62280097 + MLT1J LTR MaLR 246 468 -43 1326 211 19 88 chr13 39593169 39593543 -62279626 - MLT1A1 LTR MaLR -7 358 11 261 0 0 0 chr13 39593568 39593597 -62279572 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1894 141 70 17 chr13 39594216 39594571 -62278598 - THE1C LTR MaLR -1 374 1 266 228 0 98 chr13 39594784 39594876 -62278293 - MER5B DNA MER1_type -20 158 76 923 159 61 0 chr13 39595059 39595222 -62277947 - THE1C LTR MaLR -175 200 28 1751 160 10 13 chr13 39595831 39596131 -62277038 - AluSx SINE Alu -13 299 1 22 0 0 0 chr13 39597458 39597480 -62275689 + AT_rich Low_complexity Low_complexity 1 22 0 3252 199 39 21 chr13 39597911 39598638 -62274531 - HERVL74 LTR ERVL -1382 4303 3564 * 4075 185 34 26 chr13 39598631 39599437 -62273732 - HERVL74 LTR ERVL -2280 3405 2594 2269 206 58 16 chr13 39599437 39600068 -62273101 - HERVL74 LTR ERVL -4960 725 1 840 260 15 0 chr13 39600068 39600264 -62272905 - MER74C LTR ERVL 0 460 262 1422 207 19 7 chr13 39600304 39600574 -62272595 - MER74C LTR ERVL -187 273 1 22 88 0 0 chr13 39601047 39601104 -62272065 + AT_rich Low_complexity Low_complexity 1 57 0 437 311 104 45 chr13 39601438 39601910 -62271259 + L1M4 LINE L1 2681 3180 -2966 43 35 0 0 chr13 39602007 39602064 -62271105 + AT_rich Low_complexity Low_complexity 1 57 0 1679 136 43 0 chr13 39602317 39602575 -62270594 + AluSx SINE Alu 1 269 -43 275 0 0 28 chr13 39602578 39602614 -62270555 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 359 278 98 20 chr13 39603109 39603364 -62269805 + L1M4 LINE L1 4199 4473 -1673 4229 124 12 4 chr13 39603672 39604363 -62268806 - L1MA2 LINE L1 0 6304 5609 1705 161 18 12 chr13 39604363 39604698 -62268471 - L1M1 LINE L1 -4249 3316 2980 928 238 30 30 chr13 39604691 39604922 -62268247 - L1M1 LINE L1 -7084 481 251 * 297 336 128 13 chr13 39604924 39605150 -62268019 - L2 LINE L2 -1357 1957 1706 287 364 45 0 chr13 39605344 39605498 -62267671 - L2 LINE L2 -1627 1687 1527 21 0 0 0 chr13 39606725 39606746 -62266423 + AT_rich Low_complexity Low_complexity 1 21 0 896 261 134 43 chr13 39611866 39612329 -62260840 + MLT1D LTR MaLR 1 505 0 321 327 111 25 chr13 39612333 39612495 -62260674 + HAL1 LINE L1 423 598 -1909 26 0 0 0 chr13 39612609 39612635 -62260534 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr13 39612910 39612953 -62260216 + AT_rich Low_complexity Low_complexity 1 43 0 440 284 90 22 chr13 39613051 39613319 -62259850 + HAL1 LINE L1 1180 1465 -1042 255 215 0 0 chr13 39613319 39613384 -62259785 + GA-rich Low_complexity Low_complexity 2 66 0 24 32 0 0 chr13 39613406 39613437 -62259732 + AT_rich Low_complexity Low_complexity 1 31 0 411 258 75 32 chr13 39613731 39613917 -62259252 + HAL1 LINE L1 1685 1878 -629 293 240 0 19 chr13 39614050 39614154 -62259015 + HAL1 LINE L1 2101 2202 -305 797 192 7 120 chr13 39614370 39614661 -62258508 + L1M4 LINE L1 860 1117 -5425 285 87 0 0 chr13 39615114 39615160 -62258009 + L1PA6 LINE L1 6107 6152 -2 21 0 0 0 chr13 39615320 39615341 -62257828 + AT_rich Low_complexity Low_complexity 1 21 0 532 243 9 0 chr13 39615508 39615619 -62257550 + AluJ SINE Alu 5 116 -186 403 250 44 19 chr13 39616196 39616356 -62256813 + L1M4 LINE L1 3 166 -6376 3047 258 53 35 chr13 39616416 39618164 -62255005 + L1M4 LINE L1 348 2158 -4488 378 262 78 7 chr13 39618222 39618363 -62254806 + MER58 DNA MER1_type 2267 2417 -3 281 294 41 46 chr13 39618611 39618808 -62254361 - HAL1 LINE L1 -24 2483 2288 1108 176 0 0 chr13 39619302 39619490 -62253679 + AluJ SINE Alu 104 291 -21 1130 162 0 0 chr13 39619534 39619719 -62253450 - AluSx SINE Alu -127 185 1 2804 3 0 0 chr13 39619775 39620080 -62253089 + AluYa5 SINE Alu 1 305 -6 22 0 0 0 chr13 39621556 39621578 -62251591 + AT_rich Low_complexity Low_complexity 1 22 0 1323 227 97 3 chr13 39622276 39622628 -62250541 + L1MA4 LINE L1 5909 6293 -7 23 33 0 0 chr13 39622629 39622659 -62250510 + AT_rich Low_complexity Low_complexity 1 30 0 1572 208 64 124 chr13 39622673 39623312 -62249857 + MER77 LTR ERV1 5 605 0 21 0 0 0 chr13 39623569 39623590 -62249579 + AT_rich Low_complexity Low_complexity 1 21 0 624 288 58 35 chr13 39623592 39623818 -62249351 - MIR SINE MIR -4 258 28 394 352 102 0 chr13 39623821 39623997 -62249172 - MIR SINE MIR -16 246 53 25 75 0 0 chr13 39624143 39624196 -62248973 + AT_rich Low_complexity Low_complexity 1 53 0 530 296 66 64 chr13 39625793 39626305 -62246864 - MLT1F1 LTR MaLR -3 585 69 1932 128 0 0 chr13 39626331 39626605 -62246564 - AluSx SINE Alu -14 298 25 555 133 83 61 chr13 39626614 39626795 -62246374 + HERVKC4 LTR ERVK 2664 2848 -2414 183 80 0 0 chr13 39627025 39627050 -62246119 + (GA)n Simple_repeat Simple_repeat 1 25 0 1199 273 134 27 chr13 39627442 39628274 -62244895 + L1MCc LINE L1 831 1752 -4892 351 0 0 0 chr13 39628508 39628547 -62244622 + (A)n Simple_repeat Simple_repeat 1 39 0 1042 275 62 26 chr13 39628651 39629571 -62243598 + L1MCc LINE L1 2387 3304 -3637 639 289 82 26 chr13 39629550 39629930 -62243239 + L1MCc LINE L1 17 417 -6006 * 664 233 36 22 chr13 39630212 39630435 -62242734 - L1MEc LINE L1 -4307 2089 1864 230 241 0 0 chr13 39630491 39630549 -62242620 - L1MEc LINE L1 -4636 1760 1703 6641 76 2 0 chr13 39630567 39631843 -62241326 - L1PA7 LINE L1 -11 6143 4858 4128 102 51 5 chr13 39631843 39632473 -62240696 + L1PA7 LINE L1 4185 4843 -1303 2373 288 99 41 chr13 39632467 39634060 -62239109 - L1MEc LINE L1 -4675 1721 37 * 6961 135 87 100 chr13 39634152 39635874 -62237295 + pTR5 LTR ERV1 740 2438 0 330 26 0 0 chr13 39636531 39636570 -62236599 + (CA)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr13 39637145 39637167 -62236002 + AT_rich Low_complexity Low_complexity 1 22 0 26 82 0 0 chr13 39637235 39637296 -62235873 + AT_rich Low_complexity Low_complexity 1 61 0 4134 181 29 19 chr13 39637577 39638102 -62235067 + L1MC1 LINE L1 5434 5971 -362 2271 108 0 0 chr13 39638102 39638407 -62234762 + AluY SINE Alu 3 307 -4 4134 181 29 19 chr13 39638407 39638717 -62234452 + L1MC1 LINE L1 5971 6277 -56 631 273 57 120 chr13 39638824 39639384 -62233785 + L1MC4a LINE L1 3652 4176 -1970 26 30 0 0 chr13 39639574 39639607 -62233562 + AT_rich Low_complexity Low_complexity 1 33 0 274 281 56 12 chr13 39639652 39639812 -62233357 + L1MC4a LINE L1 4442 4608 -1538 2159 95 0 26 chr13 39639863 39640169 -62233000 + AluSq SINE Alu 3 300 -13 204 356 55 0 chr13 39640816 39640889 -62232280 + L2 LINE L2 3228 3304 -9 10905 239 22 23 chr13 39641124 39644588 -62228581 - L1P4 LINE L1 -624 5542 2087 1037 292 59 29 chr13 39644633 39644995 -62228174 + L1MC4a LINE L1 5483 5833 -1975 1846 150 142 18 chr13 39644995 39645376 -62227793 - MSTA LTR MaLR 0 428 1 1037 292 59 29 chr13 39645376 39646097 -62227072 + L1MC4a LINE L1 5833 6627 -1181 696 263 19 5 chr13 39646132 39646341 -62226828 + L1MD3 LINE L1 7088 7299 -696 357 253 0 21 chr13 39646349 39646444 -62226725 + MLT1F1 LTR MaLR 32 124 -443 498 328 17 0 chr13 39646445 39646622 -62226547 + L1MD3 LINE L1 7404 7583 -412 840 265 65 18 chr13 39646630 39646966 -62226203 + L1MD3 LINE L1 7643 7994 -1 222 200 0 0 chr13 39646969 39647004 -62226165 - MIR SINE MIR -18 244 210 200 308 215 0 chr13 39646970 39647035 -62226134 - L2 LINE L2 -25 3247 3169 * 22 35 0 0 chr13 39647074 39647103 -62226066 + AT_rich Low_complexity Low_complexity 1 29 0 2189 102 10 0 chr13 39647248 39647551 -62225618 - AluSp SINE Alu -7 306 1 363 303 97 26 chr13 39649867 39650062 -62223107 + L3 LINE CR1 1072 1280 -297 264 328 135 13 chr13 39650076 39650305 -62222864 - L2 LINE L2 -3 3310 3054 26 30 0 0 chr13 39650452 39650485 -62222684 + AT_rich Low_complexity Low_complexity 1 33 0 1819 193 71 53 chr13 39650683 39651134 -62222035 - L1MD2 LINE L1 -457 5902 5444 6340 138 22 20 chr13 39651160 39652754 -62220415 - L1MA1 LINE L1 -2 6300 4706 4988 229 30 8 chr13 39652758 39653872 -62219297 - L1M1 LINE L1 -6418 1147 10 4473 21 0 0 chr13 39654178 39654701 -62218468 - L1PA3 LINE L1 -1610 4536 4014 7470 28 2 9 chr13 39654701 39656299 -62216870 + L1PA3 LINE L1 4559 6152 -3 228 200 0 0 chr13 39656830 39656880 -62216289 + (CA)n Simple_repeat Simple_repeat 1 50 0 4845 155 94 6 chr13 39657125 39658192 -62214977 - L1MA4A LINE L1 -7 6998 5854 25 0 0 0 chr13 39658192 39658217 -62214952 + AT_rich Low_complexity Low_complexity 1 25 0 754 220 6 6 chr13 39658219 39658387 -62214782 - L1PA15 LINE L1 0 6165 5998 1937 234 86 2 chr13 39658387 39658887 -62214282 - L1P LINE L1 -1537 4609 4068 21455 62 4 2 chr13 39658887 39662512 -62210657 - L1PA6 LINE L1 0 6154 2527 45 55 0 0 chr13 39662512 39662585 -62210584 + AT_rich Low_complexity Low_complexity 1 73 0 16380 115 9 14 chr13 39662608 39665113 -62208056 - L1PA6 LINE L1 -3644 2502 11 3714 215 37 34 chr13 39665119 39666141 -62207028 - L1P LINE L1 -2060 4086 3062 * 10963 229 19 13 chr13 39666130 39669036 -62204133 - L1MA4A LINE L1 -970 5878 2954 9453 219 119 31 chr13 39669046 39671359 -62201810 - L1MA4A LINE L1 -4040 2809 260 2224 79 0 0 chr13 39671359 39671659 -62201510 - AluSc SINE Alu 0 300 1 9453 219 119 31 chr13 39671659 39671829 -62201340 - L1MA4A LINE L1 -6589 260 106 23 78 0 0 chr13 39672549 39672600 -62200569 + AT_rich Low_complexity Low_complexity 1 51 0 243 0 0 0 chr13 39672636 39672663 -62200506 + (CA)n Simple_repeat Simple_repeat 2 28 0 222 333 159 26 chr13 39673574 39673769 -62199400 + MIR SINE MIR 39 259 -3 183 80 0 0 chr13 39673822 39673847 -62199322 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 1991 136 10 0 chr13 39674718 39675019 -62198150 - AluSx SINE Alu -8 304 1 22 0 0 0 chr13 39675697 39675719 -62197450 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 39675865 39675893 -62197276 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr13 39676724 39676757 -62196412 + AT_rich Low_complexity Low_complexity 1 33 0 25 83 0 0 chr13 39676840 39676900 -62196269 + AT_rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr13 39676960 39676985 -62196184 + AT_rich Low_complexity Low_complexity 1 25 0 2345 83 3 0 chr13 39677026 39677326 -62195843 - AluY SINE Alu -10 301 1 344 330 103 39 chr13 39677449 39677779 -62195390 - MLT1H LTR MaLR -114 435 85 267 320 20 26 chr13 39678197 39678350 -62194819 + L1MC/D LINE L1 5588 5739 -2069 2004 137 0 27 chr13 39678643 39678942 -62194227 + AluSx SINE Alu 1 291 -21 28 29 0 0 chr13 39679989 39680024 -62193145 + AT_rich Low_complexity Low_complexity 1 35 0 7812 17 0 0 chr13 39681221 39682617 -62190552 + L1PA2 LINE L1 4762 6154 -1 24 53 0 0 chr13 39683280 39683318 -62189851 + AT_rich Low_complexity Low_complexity 1 38 0 570 162 17 8 chr13 39683438 39683555 -62189614 + L1MA9 LINE L1 6189 6306 -6 5645 137 71 100 chr13 39683621 39685917 -62187252 + L1PA13 LINE L1 3926 6143 -20 30 0 0 0 chr13 39686041 39686071 -62187098 + AT_rich Low_complexity Low_complexity 1 30 0 839 248 31 0 chr13 39687554 39687780 -62185389 - L1MC/D LINE L1 -2241 5801 5569 474 277 33 37 chr13 39687861 39688161 -62185008 - L1MC/D LINE L1 -1081 5065 4767 27 29 0 0 chr13 39688312 39688346 -62184823 + AT_rich Low_complexity Low_complexity 1 34 0 588 282 54 68 chr13 39688373 39688893 -62184276 + MLT1F1 LTR MaLR 55 567 0 26 30 0 0 chr13 39689887 39689920 -62183249 + AT_rich Low_complexity Low_complexity 1 33 0 23 78 0 0 chr13 39690337 39690388 -62182781 + AT_rich Low_complexity Low_complexity 1 51 0 40 53 0 32 chr13 39691552 39691646 -62181523 + AT_rich Low_complexity Low_complexity 1 91 0 24 0 0 0 chr13 39692525 39692549 -62180620 + AT_rich Low_complexity Low_complexity 1 24 0 349 276 80 51 chr13 39692781 39693092 -62180077 - L1ME LINE L1 -5189 881 562 2082 204 41 5 chr13 39693093 39693534 -62179635 - LTR32 LTR ERVL 0 471 15 347 260 88 21 chr13 39693883 39694058 -62179111 - L1ME LINE L1 -5835 235 52 340 319 35 21 chr13 39694108 39694249 -62178920 + L1M4 LINE L1 1566 1708 -4834 23 0 0 0 chr13 39694339 39694362 -62178807 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 39694715 39694738 -62178431 + (A)n Simple_repeat Simple_repeat 1 23 0 969 104 0 7 chr13 39695300 39695444 -62177725 - L1PA8 LINE L1 -2 6170 6028 417 344 118 15 chr13 39695470 39695906 -62177263 + L1MC4 LINE L1 6448 7029 -864 2248 105 7 0 chr13 39695913 39696217 -62176952 - AluY SINE Alu -5 306 1 413 320 0 0 chr13 39696514 39696614 -62176555 - MLT1G1 LTR MaLR -475 120 21 258 242 0 16 chr13 39696940 39697002 -62176167 - MER21B-int LTR ERV1 -2571 1620 1560 6964 246 64 22 chr13 39697005 39700803 -62172366 + L1MA5 LINE L1 1197 5248 -1600 333 68 0 0 chr13 39700803 39700847 -62172322 + (CA)n Simple_repeat Simple_repeat 1 44 0 6964 246 64 22 chr13 39700847 39701421 -62171748 + L1MA5 LINE L1 5248 5796 -1052 1960 163 20 20 chr13 39701416 39701773 -62171396 + L1MA5 LINE L1 6268 6624 -378 * 3624 240 9 1 chr13 39701784 39702527 -62170642 - MER21B-int LTR ERV1 -3442 749 1 801 235 142 4 chr13 39702554 39702822 -62170347 - MER21B LTR ERV1 -50 813 509 29 0 0 0 chr13 39703245 39703274 -62169895 + AT_rich Low_complexity Low_complexity 1 29 0 188 338 15 0 chr13 39703511 39703579 -62169590 + L2 LINE L2 2992 3060 -212 516 72 0 0 chr13 39703711 39703780 -62169389 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 2172 131 0 0 chr13 39703802 39704107 -62169062 - AluSc SINE Alu -4 305 1 484 286 8 0 chr13 39704121 39704247 -62168922 + AluJb SINE Alu 170 296 -16 1769 118 4 11 chr13 39704254 39704516 -62168653 + AluY SINE Alu 41 300 -11 24 77 0 0 chr13 39704526 39704578 -62168591 + AT_rich Low_complexity Low_complexity 1 52 0 829 332 58 40 chr13 39705569 39706376 -62166793 + L2 LINE L2 2480 3299 -14 540 359 81 13 chr13 39706684 39707068 -62166101 - L2 LINE L2 -374 2940 2531 237 369 33 8 chr13 39707161 39707283 -62165886 + MIR SINE MIR 52 176 -86 2127 142 14 22 chr13 39708013 39708380 -62164789 + THE1B LTR MaLR 1 364 0 641 320 104 34 chr13 39708420 39709182 -62163987 + L1ME LINE L1 136 1012 -5203 2326 81 7 3 chr13 39709182 39709492 -62163677 + AluY SINE Alu 1 311 0 641 320 104 34 chr13 39709492 39710067 -62163102 + L1ME LINE L1 1012 1546 -4669 252 255 66 32 chr13 39710227 39710383 -62162786 + L1ME LINE L1 2241 2383 -3832 1314 281 36 13 chr13 39710389 39710856 -62162313 + L1ME1 LINE L1 5645 6122 -44 24 77 0 0 chr13 39710903 39710955 -62162214 + AT_rich Low_complexity Low_complexity 1 52 0 369 58 0 0 chr13 39712046 39712098 -62161071 + (CA)n Simple_repeat Simple_repeat 2 53 0 25 51 0 0 chr13 39712177 39712216 -62160953 + AT_rich Low_complexity Low_complexity 1 39 0 265 288 106 47 chr13 39712679 39712849 -62160320 - L2 LINE L2 0 3313 3134 248 213 0 0 chr13 39712994 39713041 -62160128 + MER76 LTR ERV 621 667 -21 1647 242 47 91 chr13 39713048 39713684 -62159485 - MER76 LTR ERV -59 629 22 1397 219 53 3 chr13 39713692 39714011 -62159158 + MER54A LTR ERVL 567 901 0 266 139 0 0 chr13 39714459 39714502 -62158667 - MADE1 DNA Mariner -37 43 1 1874 166 0 3 chr13 39714994 39715295 -62157874 - AluSx SINE Alu -12 300 1 22 80 0 0 chr13 39715552 39715602 -62157567 + AT_rich Low_complexity Low_complexity 1 50 0 15909 32 2 1 chr13 39715602 39718282 -62154887 - L1PA3 LINE L1 -3 6152 3460 1111 216 32 65 chr13 39718751 39719061 -62154108 + MLT1A1 LTR MaLR 1 300 -65 1075 194 10 1 chr13 39719076 39719462 -62153707 + MER65A LTR ERV1 1 445 0 382 340 79 59 chr13 39720020 39720356 -62152813 + L1ME3A LINE L1 597 952 -5167 1761 181 121 5 chr13 39720356 39720743 -62152426 - MSTB1 LTR MaLR 0 432 1 382 340 79 59 chr13 39720743 39721012 -62152157 + L1ME3A LINE L1 952 1214 -4905 231 232 98 12 chr13 39721609 39721691 -62151478 + L1ME3A LINE L1 4060 4148 -1981 251 242 0 0 chr13 39721932 39721994 -62151175 + L1ME3A LINE L1 5398 5459 -688 192 40 0 0 chr13 39721994 39722019 -62151150 + (CA)n Simple_repeat Simple_repeat 2 26 0 1080 283 70 34 chr13 39722041 39722542 -62150627 + L1ME3A LINE L1 5566 6084 -69 369 335 49 31 chr13 39722576 39722925 -62150244 - HAL1 LINE L1 -581 1926 1572 306 320 108 29 chr13 39723087 39723393 -62149776 - HAL1 LINE L1 -1078 1429 1100 1532 189 26 3 chr13 39723517 39723862 -62149307 - MSTB2 LTR MaLR 0 457 15 351 0 0 0 chr13 39723910 39723949 -62149220 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2189 113 3 0 chr13 39724221 39724522 -62148647 - AluSq SINE Alu -11 302 1 506 309 58 61 chr13 39725393 39725739 -62147430 + MLT1J LTR MaLR 131 475 -36 22 35 0 0 chr13 39726898 39726927 -62146242 + AT_rich Low_complexity Low_complexity 1 29 0 204 308 70 51 chr13 39727247 39727403 -62145766 + L2 LINE L2 3155 3313 0 418 191 143 27 chr13 39727430 39727577 -62145592 + L1MD3 LINE L1 7779 7942 -53 957 83 23 0 chr13 39727584 39727716 -62145453 - AluSc SINE Alu -9 300 166 22 0 0 0 chr13 39727725 39727747 -62145422 + AT_rich Low_complexity Low_complexity 1 22 0 1131 258 132 18 chr13 39727782 39728337 -62144832 + L1ME4a LINE L1 4648 5265 -881 813 261 51 9 chr13 39728338 39728553 -62144616 - MER58A DNA MER1_type 0 224 1 355 270 10 10 chr13 39728559 39728659 -62144510 + L1ME4a LINE L1 5268 5367 -2675 250 337 39 62 chr13 39729523 39729701 -62143468 - MIR SINE MIR -81 181 8 282 238 0 0 chr13 39729720 39729783 -62143386 + MLT1F1 LTR MaLR 1 63 -504 1249 226 160 6 chr13 39729859 39730178 -62142991 + MLT1F1 LTR MaLR 198 565 -2 414 0 0 0 chr13 39730335 39730381 -62142788 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr13 39730712 39730741 -62142428 + AT_rich Low_complexity Low_complexity 1 29 0 356 282 115 48 chr13 39730758 39731010 -62142159 + L1ME4a LINE L1 5715 5983 -138 30 0 0 0 chr13 39731493 39731523 -62141646 + AT_rich Low_complexity Low_complexity 1 30 0 2178 52 73 3 chr13 39731687 39731973 -62141196 - AluY SINE Alu -5 306 1 685 245 88 110 chr13 39732029 39732720 -62140449 + L1MC5 LINE L1 6627 7302 -659 349 272 6 12 chr13 39732732 39732905 -62140264 + (TA)n Simple_repeat Simple_repeat 2 173 0 310 247 12 0 chr13 39732905 39732990 -62140179 + L1MC5 LINE L1 7315 7400 -561 869 186 6 6 chr13 39733886 39734047 -62139122 - MSTC LTR MaLR -1 427 267 313 290 20 0 chr13 39734083 39734183 -62138986 - U13 snRNA snRNA -2 102 1 1887 145 37 0 chr13 39734570 39734867 -62138302 - AluSx SINE Alu -4 308 1 399 272 52 88 chr13 39734924 39735196 -62137973 - L1 LINE L1 -2193 3953 3692 679 194 29 0 chr13 39735691 39735830 -62137339 - BC200 scRNA scRNA -57 143 1 258 353 65 48 chr13 39735911 39736017 -62137152 + L2 LINE L2 450 553 -2761 2883 81 59 7 chr13 39736017 39736400 -62136769 + MLT2A1 LTR ERVL 1 409 -35 592 13 26 0 chr13 39736400 39736477 -62136692 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 2883 81 59 7 chr13 39736477 39736515 -62136654 + MLT2A1 LTR ERVL 409 444 0 258 353 65 48 chr13 39736515 39736700 -62136469 + L2 LINE L2 553 746 -2568 2034 107 0 0 chr13 39737319 39737600 -62135569 + AluSc SINE Alu 22 302 -7 188 369 71 24 chr13 39737968 39738136 -62135033 + L2 LINE L2 1860 2035 -1279 28 91 0 0 chr13 39738148 39738225 -62134944 + AT_rich Low_complexity Low_complexity 1 77 0 279 0 0 0 chr13 39738288 39738319 -62134850 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr13 39739219 39739248 -62133921 + AT_rich Low_complexity Low_complexity 1 29 0 206 222 22 0 chr13 39739253 39739298 -62133871 + CT-rich Low_complexity Low_complexity 3 48 0 204 350 75 0 chr13 39739298 39739378 -62133791 - MIR SINE MIR -105 157 72 431 67 84 0 chr13 39739414 39739533 -62133636 + (TA)n Simple_repeat Simple_repeat 2 130 0 23 33 0 0 chr13 39739577 39739607 -62133562 + AT_rich Low_complexity Low_complexity 1 30 0 327 179 0 0 chr13 39739607 39739674 -62133495 + (CA)n Simple_repeat Simple_repeat 2 68 0 234 188 0 0 chr13 39739751 39739799 -62133370 + (TA)n Simple_repeat Simple_repeat 2 49 0 268 255 191 11 chr13 39740673 39740767 -62132402 - MIR SINE MIR -26 236 126 22 35 0 0 chr13 39741411 39741440 -62131729 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr13 39742184 39742237 -62130932 + AT_rich Low_complexity Low_complexity 1 53 0 31 26 0 0 chr13 39744290 39744328 -62128841 + AT_rich Low_complexity Low_complexity 1 38 0 594 286 91 5 chr13 39744424 39744644 -62128525 + MIR SINE MIR 19 257 -5 23 33 0 0 chr13 39744922 39744952 -62128217 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr13 39745495 39745518 -62127651 + AT_rich Low_complexity Low_complexity 1 23 0 1978 109 0 27 chr13 39745628 39745922 -62127247 + AluSx SINE Alu 1 286 -26 2115 112 3 3 chr13 39746052 39746347 -62126822 + AluSg SINE Alu 5 299 -11 303 279 99 9 chr13 39746635 39746746 -62126423 + L2 LINE L2 3193 3313 0 2080 197 36 2 chr13 39746864 39747276 -62125893 - MSTB LTR MaLR 0 426 1 3103 174 48 0 chr13 39747543 39748153 -62125016 + L1PB4 LINE L1 5516 6154 -2 1267 172 19 4 chr13 39748165 39748426 -62124743 + L1 LINE L1 5042 5306 -840 210 296 160 48 chr13 39748937 39749062 -62124107 + L2 LINE L2 3175 3313 0 1450 204 24 31 chr13 39749773 39750155 -62123014 - L1 LINE L1 -2500 3646 3268 23 0 0 0 chr13 39750631 39750654 -62122515 + AT_rich Low_complexity Low_complexity 1 23 0 327 49 0 0 chr13 39752339 39752380 -62120789 + (CA)n Simple_repeat Simple_repeat 2 42 0 801 288 62 60 chr13 39752911 39753345 -62119824 + L1MC4 LINE L1 6496 6930 -1112 324 83 0 0 chr13 39753383 39753431 -62119738 + (TG)n Simple_repeat Simple_repeat 1 48 0 596 132 0 0 chr13 39753476 39753582 -62119587 - LOR1-int LTR ERV1 -3846 4274 4169 1463 205 10 106 chr13 39753582 39753927 -62119242 + L1 LINE L1 3994 4278 -1868 3260 89 13 4 chr13 39753927 39754388 -62118781 - L1PA11 LINE L1 0 6174 5710 1463 205 10 106 chr13 39754388 39754540 -62118629 + L1 LINE L1 4278 4443 -1703 1579 194 25 16 chr13 39754544 39754863 -62118306 - MSTB LTR MaLR -103 323 2 1630 156 52 3 chr13 39754863 39755209 -62117960 + L1MA8 LINE L1 5923 6285 -6 28 29 0 0 chr13 39755209 39755244 -62117925 + AT_rich Low_complexity Low_complexity 1 35 0 4734 157 19 47 chr13 39755314 39755444 -62117725 + L1PA16 LINE L1 5059 5191 -975 387 0 0 0 chr13 39755444 39755487 -62117682 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4734 157 19 47 chr13 39755487 39755736 -62117433 + L1PA16 LINE L1 5191 5446 -720 1954 88 11 0 chr13 39755736 39755996 -62117173 + AluSq SINE Alu 44 306 -7 4734 157 19 47 chr13 39755996 39756759 -62116410 + L1PA16 LINE L1 5446 6166 0 504 320 68 31 chr13 39756907 39757363 -62115806 + L1ME3A LINE L1 4927 5399 -747 249 229 14 43 chr13 39757468 39757538 -62115631 + L1ME3A LINE L1 5461 5528 -638 24 77 0 0 chr13 39757546 39757598 -62115571 + AT_rich Low_complexity Low_complexity 1 52 0 789 271 89 30 chr13 39757668 39758107 -62115062 + L1ME3A LINE L1 5602 6066 -104 23 86 0 0 chr13 39758479 39758537 -62114632 + AT_rich Low_complexity Low_complexity 1 58 0 233 200 31 31 chr13 39758801 39758866 -62114303 + MER92B LTR ERV1 254 318 -318 231 36 0 0 chr13 39759649 39759677 -62113492 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 186 118 0 0 chr13 39759769 39759803 -62113366 + (TA)n Simple_repeat Simple_repeat 2 35 0 1791 127 0 0 chr13 39759803 39760062 -62113107 - AluSq SINE Alu -18 295 37 21 0 0 0 chr13 39760329 39760350 -62112819 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 39760485 39760512 -62112657 + AT_rich Low_complexity Low_complexity 1 27 0 1070 309 28 40 chr13 39760975 39761477 -62111692 + L1ME1 LINE L1 5649 6144 -22 404 256 36 54 chr13 39761528 39761696 -62111473 + L1MC4 LINE L1 6922 7086 -956 1507 255 82 18 chr13 39761710 39762310 -62110859 + L1MC4 LINE L1 7259 7896 -146 265 242 96 51 chr13 39762372 39762550 -62110619 + HsTC2 DNA Tc2 1712 1897 -1 23 33 0 0 chr13 39764445 39764475 -62108694 + AT_rich Low_complexity Low_complexity 1 30 0 353 318 159 0 chr13 39765292 39765418 -62107751 - L2 LINE L2 -6 3266 3121 745 262 43 0 chr13 39766840 39767027 -62106142 + MER58A DNA MER1_type 30 224 0 32 67 0 0 chr13 39767128 39767188 -62105981 + AT_rich Low_complexity Low_complexity 1 60 0 1611 201 61 18 chr13 39767382 39767774 -62105395 + L1MA8 LINE L1 5877 6285 -6 233 132 75 0 chr13 39767805 39767858 -62105311 + Charlie5 DNA MER1_type 2425 2481 -131 268 374 38 0 chr13 39767982 39768113 -62105056 + L2 LINE L2 2948 3083 -189 31 42 0 42 chr13 39768315 39768386 -62104783 + AT_rich Low_complexity Low_complexity 1 68 0 211 339 54 9 chr13 39768796 39768908 -62104261 + L2 LINE L2 3196 3312 -1 2075 138 132 5 chr13 39769052 39769430 -62103739 + MSTA LTR MaLR 1 426 -2 7877 156 64 14 chr13 39769434 39770937 -62102232 + MSTA-int LTR MaLR 3 1580 0 623 178 9 0 chr13 39770937 39771044 -62102125 + MSTA LTR MaLR 1 108 -320 208 324 15 15 chr13 39771759 39771827 -62101342 + L2 LINE L2 3192 3259 -54 2102 115 0 3 chr13 39772525 39772820 -62100349 - AluSq SINE Alu -8 305 12 201 234 21 0 chr13 39773101 39773148 -62100021 + (TCTCTG)n Simple_repeat Simple_repeat 2 49 0 1071 199 0 5 chr13 39773158 39773374 -62099795 - L1PA15 LINE L1 -1 6164 5950 4854 271 42 26 chr13 39773393 39773520 -62099649 - L1PA13 LINE L1 -2763 4034 3911 1918 155 23 3 chr13 39773520 39773823 -62099346 - AluSx SINE Alu -1 311 3 4854 271 42 26 chr13 39773823 39776363 -62096806 - L1PA13 LINE L1 -2886 3911 1323 1959 329 31 42 chr13 39776340 39777184 -62095985 - L1PA13 LINE L1 -5952 835 1 * 965 275 96 33 chr13 39778905 39779334 -62093835 + LTR40a LTR ERVL 15 470 -49 463 233 0 50 chr13 39780275 39780395 -62092774 - L1M4c LINE L1 -6251 133 20 895 124 16 32 chr13 39781806 39781992 -62091177 + L1MA7 LINE L1 6108 6290 -1 2013 143 0 3 chr13 39783214 39783514 -62089655 + AluSx SINE Alu 1 299 -13 228 67 0 0 chr13 39784302 39784332 -62088837 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1795 191 123 5 chr13 39784496 39784879 -62088290 - MSTA LTR MaLR 0 428 1 8517 181 25 5 chr13 39784879 39786497 -62086672 - MSTA-int LTR MaLR 0 1651 1 1898 159 148 3 chr13 39786497 39786869 -62086300 - MSTA LTR MaLR 0 428 3 676 223 103 0 chr13 39786970 39787154 -62086015 - L1MA9 LINE L1 -1 6311 6109 9607 147 36 13 chr13 39787154 39788853 -62084316 - Tigger3(Golem) DNA MER2_type -1 3028 1291 1865 179 15 3 chr13 39788957 39789287 -62083882 - L1PA15 LINE L1 -31 6134 5801 354 242 0 0 chr13 39789287 39789353 -62083816 - Tigger3(Golem) DNA MER2_type -2963 66 1 695 172 67 28 chr13 39789353 39789533 -62083636 - L1MA9 LINE L1 -201 6111 5925 1810 184 47 35 chr13 39789535 39790080 -62083089 + MLT2A2 LTR ERVL 3 554 0 1034 193 4 34 chr13 39790080 39790319 -62082850 - L1MA9 LINE L1 -383 5929 5698 369 193 5 13 chr13 39790319 39790392 -62082777 + LTR9 LTR ERV1 554 612 0 232 333 38 8 chr13 39790394 39790526 -62082643 - L1ME LINE L1 -611 5553 5418 22 0 0 0 chr13 39790925 39790947 -62082222 + AT_rich Low_complexity Low_complexity 1 22 0 2092 117 3 10 chr13 39791758 39792058 -62081111 + AluSp SINE Alu 1 298 -15 21 0 0 0 chr13 39792356 39792377 -62080792 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 39792657 39792685 -62080484 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 39793316 39793339 -62079830 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 39793561 39793585 -62079584 + AT_rich Low_complexity Low_complexity 1 24 0 1821 201 64 48 chr13 39794743 39795162 -62078007 - MSTB LTR MaLR 0 426 1 23 68 0 0 chr13 39796304 39796348 -62076821 + AT_rich Low_complexity Low_complexity 1 44 0 190 408 115 27 chr13 39796560 39796820 -62076349 + L2 LINE L2 2987 3269 -3 22 35 0 0 chr13 39796892 39796921 -62076248 + AT_rich Low_complexity Low_complexity 1 29 0 529 179 9 9 chr13 39797267 39797379 -62075790 - L1MA10 LINE L1 -2 6332 6221 505 146 12 0 chr13 39797656 39797738 -62075431 + THE1B LTR MaLR 1 83 -345 765 138 17 0 chr13 39797740 39797856 -62075313 + THE1B LTR MaLR 247 364 0 1335 150 0 0 chr13 39797856 39798076 -62075093 + MSTA-int LTR MaLR 1 220 -1360 5624 171 11 13 chr13 39798117 39799100 -62074069 + MSTA-int LTR MaLR 600 1580 0 1807 151 121 48 chr13 39799100 39799473 -62073696 + MSTA LTR MaLR 1 345 -83 1713 149 92 49 chr13 39799473 39799822 -62073347 - THE1B LTR MaLR 0 364 1 10604 113 20 8 chr13 39799822 39801383 -62071786 - THE1B-int LTR MaLR 0 1580 1 1966 134 77 37 chr13 39801383 39801733 -62071436 - THE1B LTR MaLR 0 364 1 1807 151 121 48 chr13 39801733 39801754 -62071415 + MSTA LTR MaLR 344 426 -2 1229 233 96 28 chr13 39801760 39802140 -62071029 + MLT2B1 LTR ERVL 41 442 -78 24 0 0 0 chr13 39802158 39802182 -62070987 + AT_rich Low_complexity Low_complexity 1 24 0 40 79 0 0 chr13 39802229 39802318 -62070851 + AT_rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chr13 39803219 39803240 -62069929 + AT_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr13 39803357 39803390 -62069779 + (TA)n Simple_repeat Simple_repeat 1 33 0 2104 152 43 0 chr13 39803957 39804306 -62068863 + THE1B LTR MaLR 1 364 0 26 82 0 0 chr13 39807768 39807829 -62065340 + AT_rich Low_complexity Low_complexity 1 61 0 231 170 0 0 chr13 39808149 39808196 -62064973 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr13 39808263 39808291 -62064878 + AT_rich Low_complexity Low_complexity 1 28 0 243 61 0 0 chr13 39809120 39809153 -62064016 + (TG)n Simple_repeat Simple_repeat 2 34 0 2255 171 130 19 chr13 39809212 39809743 -62063426 - LTR10E LTR ERV1 -43 590 1 27 49 0 0 chr13 39809905 39809946 -62063223 + AT_rich Low_complexity Low_complexity 1 41 0 1187 294 43 31 chr13 39810681 39811168 -62062001 + L1MD2 LINE L1 5508 6000 -359 2285 101 30 3 chr13 39811349 39811686 -62061483 - L1PA13 LINE L1 -11 6152 5807 3514 130 15 4 chr13 39811686 39812310 -62060859 + L1PA13 LINE L1 5176 5804 -364 1396 236 81 58 chr13 39812612 39813108 -62060061 - MER67D LTR ERV1 -1 513 7 261 0 0 0 chr13 39813879 39813908 -62059261 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2293 84 3 0 chr13 39814472 39814769 -62058400 - AluSp SINE Alu -15 298 1 1539 144 39 122 chr13 39814793 39815202 -62057967 + THE1C LTR MaLR 1 375 0 1363 182 40 4 chr13 39816017 39816270 -62056899 - Tigger5 DNA MER2_type -8 2315 2054 3163 134 35 14 chr13 39816270 39816762 -62056407 - MER1A DNA MER1_type 0 529 28 6664 233 76 42 chr13 39816804 39818781 -62054388 - Tigger5 DNA MER2_type -261 2062 20 9372 41 1 0 chr13 39820077 39821994 -62051175 - L1PA5 LINE L1 -3 6151 4233 26 30 0 0 chr13 39822395 39822428 -62050741 + AT_rich Low_complexity Low_complexity 1 33 0 489 34 0 0 chr13 39823639 39823698 -62049471 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 9048 194 28 2 chr13 39824037 39826462 -62046707 + L1PB1 LINE L1 3309 5788 -363 235 236 11 11 chr13 39826479 39826568 -62046601 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 409 210 0 0 chr13 39826571 39826652 -62046517 + L1 LINE L1 4511 4591 -1555 198 0 0 0 chr13 39826675 39826697 -62046472 + (TA)n Simple_repeat Simple_repeat 2 23 0 2391 120 6 0 chr13 39826697 39827054 -62046115 + L1PB1 LINE L1 5793 6151 0 22 0 0 0 chr13 39827110 39827132 -62046037 + AT_rich Low_complexity Low_complexity 1 22 0 3622 155 33 14 chr13 39827136 39827799 -62045370 - L1PB3 LINE L1 -3 6867 6192 230 0 33 0 chr13 39827823 39827853 -62045316 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1743 75 0 0 chr13 39827853 39828080 -62045089 - L1PA7 LINE L1 -13 6141 5915 12647 213 35 24 chr13 39828081 39832311 -62040858 - L1PB3 LINE L1 -671 6196 1919 1879 139 0 38 chr13 39832370 39832687 -62040482 + AluSx SINE Alu 1 305 -7 229 333 129 0 chr13 39832940 39833072 -62040097 - MIR SINE MIR -49 213 65 5890 242 32 26 chr13 39833142 39835993 -62037176 - L1PB3 LINE L1 -4937 1926 3 427 92 0 15 chr13 39836098 39836163 -62037006 + L1PA10 LINE L1 6100 6163 -5 4106 116 20 2 chr13 39836184 39836790 -62036379 + L1PA11 LINE L1 5558 6174 0 2843 223 67 12 chr13 39837686 39837863 -62035306 - L1MB7 LINE L1 -16 6168 6002 2132 161 20 54 chr13 39837863 39838310 -62034859 + MSTB1 LTR MaLR 1 432 0 2843 223 67 12 chr13 39838310 39838896 -62034273 - L1MB7 LINE L1 -182 6002 5363 3433 250 96 73 chr13 39838897 39841020 -62032149 - L1MB7 LINE L1 -1356 4790 2620 1419 95 0 62 chr13 39841022 39841257 -62031912 - AluSq SINE Alu 0 306 85 1419 281 54 47 chr13 39841330 39841616 -62031553 - L1M4c LINE L1 -4585 2059 1777 2308 66 0 3 chr13 39841616 39841903 -62031266 - AluY SINE Alu -17 294 9 1419 281 54 47 chr13 39841903 39842687 -62030482 - L1M4c LINE L1 -4867 1777 923 2228 249 17 2 chr13 39842687 39843165 -62030004 + Tigger7 DNA MER2_type 1 485 -248 438 211 0 0 chr13 39843171 39843247 -62029922 + Tigger7 DNA MER2_type 2497 2572 -15 2630 258 42 63 chr13 39843252 39844177 -62028992 - L1M4c LINE L1 -5636 906 1 231 36 0 0 chr13 39844358 39844386 -62028783 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 104 0 0 chr13 39844717 39844794 -62028375 + AT_rich Low_complexity Low_complexity 1 77 0 24 32 0 0 chr13 39844964 39844995 -62028174 + AT_rich Low_complexity Low_complexity 1 31 0 252 368 59 13 chr13 39845583 39845822 -62027347 - L1MC/D LINE L1 -1981 5827 5578 537 341 127 28 chr13 39846149 39846685 -62026484 - HAL1 LINE L1 -850 1657 1069 222 121 35 17 chr13 39846873 39846931 -62026238 + (TA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr13 39848302 39848330 -62024839 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr13 39848407 39848450 -62024719 + AT_rich Low_complexity Low_complexity 1 43 0 6297 189 29 11 chr13 39849682 39851851 -62021318 - L1PA15 LINE L1 -18 6147 3943 2179 202 76 18 chr13 39852200 39852711 -62020458 + L1MD1 LINE L1 5702 6242 0 4509 223 26 21 chr13 39852979 39853073 -62020096 + L1MB1 LINE L1 4161 4253 -1915 189 0 0 0 chr13 39853073 39853094 -62020075 + (CA)n Simple_repeat Simple_repeat 2 22 0 4509 223 26 21 chr13 39853094 39854297 -62018872 + L1MB1 LINE L1 4253 5466 -702 1168 246 71 9 chr13 39854301 39854470 -62018699 + MLT1A2 LTR MaLR 1 158 -216 342 0 0 0 chr13 39854470 39854508 -62018661 + (TC)n Simple_repeat Simple_repeat 2 39 0 1168 246 71 9 chr13 39854508 39854663 -62018506 + MLT1A2 LTR MaLR 158 345 -29 1003 195 37 45 chr13 39854675 39854921 -62018248 + L1MB1 LINE L1 5489 5732 -602 586 141 24 65 chr13 39854968 39855126 -62018043 + L1MB1 LINE L1 6021 6164 -7 2751 240 51 46 chr13 39855129 39856025 -62017144 + L1MD1 LINE L1 5328 6228 -14 253 302 10 52 chr13 39856705 39856801 -62016368 - MIR SINE MIR -98 110 19 1616 194 3 78 chr13 39857083 39857465 -62015704 - MLT1B LTR MaLR -35 355 3 33 56 0 0 chr13 39858819 39858873 -62014296 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr13 39858897 39858926 -62014243 + AT_rich Low_complexity Low_complexity 1 29 0 277 273 180 42 chr13 39859119 39859408 -62013761 + MER46C DNA MER2_type 2 330 -8 232 350 40 40 chr13 39860035 39860235 -62012934 + L2 LINE L2 3014 3213 -100 202 385 67 37 chr13 39860945 39861080 -62012089 + L2 LINE L2 3134 3272 0 216 0 0 0 chr13 39861727 39861751 -62011418 + (TA)n Simple_repeat Simple_repeat 1 24 0 28 0 0 0 chr13 39861902 39861930 -62011239 + AT_rich Low_complexity Low_complexity 1 28 0 5467 266 70 39 chr13 39862343 39862764 -62010405 - L1 LINE L1 -2010 5157 4750 315 0 0 0 chr13 39862764 39862799 -62010370 + (TG)n Simple_repeat Simple_repeat 1 35 0 5467 266 70 39 chr13 39862799 39865183 -62007986 - L1 LINE L1 -2417 4750 2463 2389 68 7 0 chr13 39865183 39865490 -62007679 - AluY SINE Alu -2 309 1 5467 266 70 39 chr13 39865490 39867159 -62006010 - L1 LINE L1 -4704 2463 847 316 298 177 14 chr13 39867302 39867443 -62005726 + MER5A DNA MER1_type 23 186 -3 309 383 78 0 chr13 39867620 39867800 -62005369 + L2 LINE L2 2377 2570 -744 2026 120 3 0 chr13 39868342 39868625 -62004544 + AluSx SINE Alu 1 284 -28 463 74 87 3 chr13 39868625 39868931 -62004238 + (TA)n Simple_repeat Simple_repeat 1 331 0 222 190 0 35 chr13 39869231 39869289 -62003880 + (TA)n Simple_repeat Simple_repeat 1 56 0 605 294 109 27 chr13 39870817 39871110 -62002059 - MLT1I LTR MaLR 0 409 93 385 275 81 34 chr13 39871964 39872113 -62001056 - MLT1H LTR MaLR -292 257 102 237 33 0 0 chr13 39872330 39872360 -62000809 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 214 0 0 chr13 39872370 39872412 -62000757 + GA-rich Low_complexity Low_complexity 2 43 0 26 0 0 0 chr13 39873892 39873918 -61999251 + AT_rich Low_complexity Low_complexity 1 26 0 180 360 35 0 chr13 39874353 39874439 -61998730 + MIR SINE MIR 93 181 -81 324 70 0 0 chr13 39874440 39874483 -61998686 + (TA)n Simple_repeat Simple_repeat 1 43 0 254 228 18 0 chr13 39874483 39874540 -61998629 + L1MD1 LINE L1 5930 5987 -255 289 222 172 10 chr13 39874550 39874649 -61998520 + L1MD1 LINE L1 5930 6044 -198 26 64 0 0 chr13 39876069 39876116 -61997053 + AT_rich Low_complexity Low_complexity 1 47 0 213 94 0 0 chr13 39876282 39876314 -61996855 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2595 182 29 11 chr13 39876335 39876936 -61996233 - L1MC/D LINE L1 -542 5791 5177 441 0 0 0 chr13 39876936 39876985 -61996184 + (TTA)n Simple_repeat Simple_repeat 3 51 0 6494 76 5 0 chr13 39876985 39878471 -61994698 - L1PA7 LINE L1 -18 6136 4648 3979 80 24 0 chr13 39878471 39879012 -61994157 + L1PA7 LINE L1 5428 5981 -173 * 22528 128 14 83 chr13 39879011 39883484 -61989685 - L1PA7 LINE L1 -1972 4174 12 2850 266 50 11 chr13 39883492 39884514 -61988655 - L1MC/D LINE L1 -958 5188 4127 1183 211 17 20 chr13 39884515 39884814 -61988355 - L1 LINE L1 -1492 4654 4357 210 291 0 0 chr13 39885044 39885099 -61988070 + CT-rich Low_complexity Low_complexity 1 55 0 1297 113 48 9 chr13 39885626 39885855 -61987314 - L1PA12 LINE L1 -4734 2847 2610 1822 160 3 0 chr13 39886194 39886487 -61986682 + AluSx SINE Alu 1 294 -18 482 327 0 46 chr13 39886565 39886782 -61986387 + LTR16A1 LTR ERVL 249 455 -2 386 325 16 55 chr13 39887324 39887579 -61985590 + HERV16 LTR ERVL 910 1154 -3842 606 235 8 0 chr13 39887844 39887976 -61985193 - AluJb SINE Alu -179 133 1 2202 147 136 13 chr13 39888085 39888548 -61984621 - L1MA4A LINE L1 -2 6301 5782 23 86 0 0 chr13 39888703 39888761 -61984408 + AT_rich Low_complexity Low_complexity 1 58 0 181 382 130 8 chr13 39890475 39890713 -61982456 + L2 LINE L2 1441 1707 -1607 234 0 0 0 chr13 39891941 39891967 -61981202 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1015 216 14 19 chr13 39892001 39892214 -61980955 - AluJo SINE Alu -94 218 7 39 50 0 0 chr13 39892278 39892338 -61980831 + AT_rich Low_complexity Low_complexity 1 60 0 289 222 172 10 chr13 39993749 39993848 -61879321 - L1MD1 LINE L1 -198 6044 5930 254 228 18 0 chr13 39993858 39993915 -61879254 - L1MD1 LINE L1 -255 5987 5930 324 70 0 0 chr13 39993915 39993958 -61879211 + (TA)n Simple_repeat Simple_repeat 2 44 0 180 360 35 0 chr13 39993959 39994045 -61879124 - MIR SINE MIR -81 181 93 26 0 0 0 chr13 39994480 39994506 -61878663 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr13 39995146 39995175 -61877994 + AT_rich Low_complexity Low_complexity 1 29 0 215 214 0 0 chr13 39995986 39996028 -61877141 + CT-rich Low_complexity Low_complexity 2 43 0 237 33 0 0 chr13 39996038 39996068 -61877101 + (CA)n Simple_repeat Simple_repeat 1 30 0 385 275 81 34 chr13 39996285 39996434 -61876735 + MLT1H LTR MaLR 102 257 -292 605 294 109 27 chr13 39997288 39997581 -61875588 + MLT1I LTR MaLR 93 409 0 222 190 0 35 chr13 39999109 39999167 -61874002 + (TA)n Simple_repeat Simple_repeat 1 56 0 35 24 0 0 chr13 39999463 39999505 -61873664 + AT_rich Low_complexity Low_complexity 1 42 0 510 62 94 0 chr13 39999505 39999665 -61873504 + (TA)n Simple_repeat Simple_repeat 1 175 0 39 0 0 0 chr13 39999665 39999704 -61873465 + AT_rich Low_complexity Low_complexity 1 39 0 462 89 70 6 chr13 39999704 39999861 -61873308 + (TA)n Simple_repeat Simple_repeat 1 167 0 2026 120 3 0 chr13 39999861 40000144 -61873025 - AluSx SINE Alu -28 284 1 309 383 78 0 chr13 40000686 40000866 -61872303 - L2 LINE L2 -744 2570 2377 316 298 177 14 chr13 40001043 40001184 -61871985 - MER5A DNA MER1_type -3 186 23 5491 265 67 34 chr13 40001327 40002996 -61870173 + L1M2a LINE L1 847 2460 -4707 2406 68 7 0 chr13 40002996 40003305 -61869864 + AluY SINE Alu 1 311 0 5491 265 67 34 chr13 40003305 40005684 -61867485 + L1M2a LINE L1 2460 4751 -2416 279 0 0 0 chr13 40005684 40005715 -61867454 + (CA)n Simple_repeat Simple_repeat 1 31 0 5491 265 67 34 chr13 40005715 40006136 -61867033 + L1M2a LINE L1 4751 5157 -2010 28 0 0 0 chr13 40006549 40006577 -61866592 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr13 40006728 40006758 -61866411 + (TA)n Simple_repeat Simple_repeat 1 30 0 202 385 67 37 chr13 40007405 40007540 -61865629 - L2 LINE L2 0 3272 3134 232 350 40 40 chr13 40008250 40008450 -61864719 - L2 LINE L2 -100 3213 3014 277 273 180 42 chr13 40009077 40009366 -61863803 - MER46C DNA MER2_type -8 330 2 22 35 0 0 chr13 40009559 40009588 -61863581 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr13 40009612 40009666 -61863503 + AT_rich Low_complexity Low_complexity 1 54 0 1616 194 3 78 chr13 40011020 40011402 -61861767 + MLT1B LTR MaLR 3 355 -35 253 302 10 52 chr13 40011684 40011780 -61861389 + MIR SINE MIR 19 110 -98 2751 240 51 46 chr13 40012460 40013356 -61859813 - L1MD1 LINE L1 -14 6228 5328 586 141 24 65 chr13 40013359 40013517 -61859652 - L1MB1 LINE L1 -7 6164 6021 1003 195 37 45 chr13 40013564 40013810 -61859359 - L1MB1 LINE L1 -602 5732 5489 1168 246 71 9 chr13 40013822 40013977 -61859192 - MLT1A2 LTR MaLR -29 345 201 342 0 0 0 chr13 40013977 40014015 -61859154 + (GA)n Simple_repeat Simple_repeat 2 39 0 1168 246 71 9 chr13 40014015 40014184 -61858985 - MLT1A2 LTR MaLR -173 201 1 4509 223 26 21 chr13 40014188 40015391 -61857778 - L1MB1 LINE L1 -702 5466 4253 189 0 0 0 chr13 40015391 40015412 -61857757 + (TG)n Simple_repeat Simple_repeat 2 22 0 4509 223 26 21 chr13 40015412 40015506 -61857663 - L1MB1 LINE L1 -1915 4253 4161 2179 202 76 18 chr13 40015774 40016285 -61856884 - L1MD1 LINE L1 0 6242 5702 6353 189 29 11 chr13 40016634 40018804 -61854365 + L1PA15 LINE L1 3943 6147 -18 29 47 0 0 chr13 40020036 40020079 -61853090 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 40020156 40020184 -61852985 + AT_rich Low_complexity Low_complexity 1 28 0 222 121 35 17 chr13 40021555 40021613 -61851556 + (TA)n Simple_repeat Simple_repeat 2 60 0 537 341 127 28 chr13 40021801 40022337 -61850832 + HAL1 LINE L1 1069 1657 -850 252 368 59 13 chr13 40022664 40022903 -61850266 + L1MC/D LINE L1 5578 5827 -1981 24 32 0 0 chr13 40023491 40023522 -61849647 + AT_rich Low_complexity Low_complexity 1 31 0 21 104 0 0 chr13 40023692 40023769 -61849400 + AT_rich Low_complexity Low_complexity 1 77 0 231 36 0 0 chr13 40024100 40024128 -61849041 + (TG)n Simple_repeat Simple_repeat 1 28 0 2636 259 42 62 chr13 40024309 40025233 -61847936 + L1MB7 LINE L1 1 906 -5636 438 211 0 0 chr13 40025238 40025314 -61847855 - Tigger7 DNA MER2_type -15 2472 2397 2228 249 17 2 chr13 40025320 40025798 -61847371 - Tigger7 DNA MER2_type -248 485 1 2010 255 68 52 chr13 40025798 40026538 -61846631 + L1MB7 LINE L1 923 1779 -4865 2319 63 0 3 chr13 40026538 40026825 -61846344 + AluY SINE Alu 9 294 -17 2010 255 68 52 chr13 40026825 40027111 -61846058 + L1MB7 LINE L1 1779 2059 -4585 1420 95 0 62 chr13 40027184 40027419 -61845750 + AluSq SINE Alu 85 306 0 3413 248 97 74 chr13 40027421 40029544 -61843625 + L1MB7 LINE L1 3118 5288 -1356 2843 223 67 12 chr13 40029545 40030131 -61843038 + L1MB7 LINE L1 5861 6500 -182 2132 161 20 54 chr13 40030131 40030578 -61842591 - MSTB1 LTR MaLR 0 432 1 2843 223 67 12 chr13 40030578 40030755 -61842414 + L1MB7 LINE L1 6500 6666 -16 4106 116 20 2 chr13 40031651 40032257 -61840912 - L1PA11 LINE L1 0 6174 5558 347 85 0 146 chr13 40032259 40032341 -61840828 - L1PA7 LINE L1 0 6154 6085 5890 240 31 25 chr13 40032448 40035299 -61837870 + L1PB2 LINE L1 3 1926 -4937 229 333 129 0 chr13 40035369 40035501 -61837668 + MIR SINE MIR 65 213 -49 1885 139 0 35 chr13 40035754 40036070 -61837099 - AluSx SINE Alu -7 305 1 12643 204 21 35 chr13 40036129 40040370 -61832799 + L1PB2 LINE L1 1919 6158 -709 1744 75 0 0 chr13 40040370 40040595 -61832574 + L1PA7 LINE L1 5915 6171 0 231 0 33 0 chr13 40040595 40040625 -61832544 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 12643 204 21 35 chr13 40040625 40041203 -61831966 + L1PB2 LINE L1 6158 6742 -125 3622 155 33 14 chr13 40040649 40041312 -61831857 + L1PB3 LINE L1 6192 6867 -3 22 0 0 0 chr13 40041316 40041338 -61831831 + AT_rich Low_complexity Low_complexity 1 22 0 2407 118 6 0 chr13 40041394 40041751 -61831418 - L1PB1 LINE L1 0 6151 5793 414 0 0 0 chr13 40041751 40041797 -61831372 + (TA)n Simple_repeat Simple_repeat 2 47 0 409 210 0 0 chr13 40041820 40041901 -61831268 - L1 LINE L1 -1555 4591 4511 309 307 20 0 chr13 40041901 40042002 -61831167 - L1MC4 LINE L1 -1336 6706 6604 9059 193 28 2 chr13 40042012 40044437 -61828732 - L1P5 LINE L1 -363 5788 3309 525 32 0 0 chr13 40044776 40044839 -61828330 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 26 30 0 0 chr13 40046046 40046079 -61827090 + AT_rich Low_complexity Low_complexity 1 33 0 9372 41 1 0 chr13 40046480 40048397 -61824772 + L1PA5 LINE L1 4233 6151 -3 6664 233 76 42 chr13 40049693 40051670 -61821499 + Tigger5 DNA MER2_type 20 2062 -261 3170 132 35 16 chr13 40051712 40052205 -61820964 + MER1A DNA MER1_type 28 529 0 1363 182 40 4 chr13 40052205 40052458 -61820711 + Tigger5 DNA MER2_type 2054 2315 -8 32 0 0 0 chr13 40053590 40053622 -61819547 + AT_rich Low_complexity Low_complexity 1 32 0 195 232 0 0 chr13 40054334 40054416 -61818753 + (TA)n Simple_repeat Simple_repeat 2 83 0 1080 203 107 38 chr13 40054771 40055136 -61818033 + MLT1B LTR MaLR 1 390 0 1841 238 100 38 chr13 40055175 40055735 -61817434 + MER76 LTR ERV 94 688 0 180 0 0 0 chr13 40055918 40055938 -61817231 + (TA)n Simple_repeat Simple_repeat 1 20 0 291 28 0 0 chr13 40056372 40056408 -61816761 + (CA)n Simple_repeat Simple_repeat 1 36 0 1906 159 120 26 chr13 40056420 40056811 -61816358 - MSTA LTR MaLR 0 428 1 8386 190 39 2 chr13 40056811 40058404 -61814765 - MSTA-int LTR MaLR 0 1651 1 1966 136 23 3 chr13 40058450 40058752 -61814417 + AluSx SINE Alu 3 310 -2 3839 200 34 12 chr13 40058793 40060312 -61812857 + L1PB4 LINE L1 4588 6149 -7 22 0 0 0 chr13 40061148 40061170 -61811999 + AT_rich Low_complexity Low_complexity 1 22 0 572 282 52 36 chr13 40061885 40062194 -61810975 - Charlie8 DNA MER1_type -1997 420 107 196 365 17 52 chr13 40062432 40062547 -61810622 - MIR SINE MIR -131 131 21 242 28 0 28 chr13 40062838 40062874 -61810295 + (TA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr13 40062873 40062894 -61810275 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 24 53 0 0 chr13 40064282 40064320 -61808849 + AT_rich Low_complexity Low_complexity 1 38 0 2085 24 0 4 chr13 40064608 40064860 -61808309 - L1PA4 LINE L1 0 6155 5905 304 85 0 4 chr13 40064860 40064901 -61808268 - L1P3 LINE L1 -388 5766 5725 21 82 0 0 chr13 40065199 40065248 -61807921 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 40065403 40065425 -61807744 + AT_rich Low_complexity Low_complexity 1 22 0 257 167 42 0 chr13 40066620 40066668 -61806501 + ERVL-F LTR ERVL 3775 3824 -1940 498 207 62 98 chr13 40066751 40066944 -61806225 + ERVL-F LTR ERVL 5562 5747 -17 397 286 21 36 chr13 40066944 40067084 -61806085 + MLT2F LTR ERVL 2 139 -524 389 236 15 146 chr13 40067088 40067287 -61805882 + MLT1E1 LTR MaLR 61 233 -391 375 223 43 36 chr13 40067481 40067620 -61805549 + ERVL LTR ERVL 2 141 -5623 1353 279 13 29 chr13 40067663 40068046 -61805123 + MLT1E1 LTR MaLR 278 654 0 2128 101 0 7 chr13 40068064 40068374 -61804795 - AluSq SINE Alu 0 309 2 348 317 35 7 chr13 40068511 40068653 -61804516 + MLT1J2 LTR MaLR 37 182 -268 224 109 0 43 chr13 40069084 40069130 -61804039 + (TTCTCC)n Simple_repeat Simple_repeat 5 48 0 293 296 33 37 chr13 40069133 40069510 -61803659 - L1MCb LINE L1 -4882 1163 1062 3698 236 59 17 chr13 40069522 40071606 -61801563 - L1MB7 LINE L1 -117 6067 3890 44 0 0 0 chr13 40071674 40071718 -61801451 + AT_rich Low_complexity Low_complexity 1 44 0 222 191 0 0 chr13 40073573 40073620 -61799549 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 28 71 0 0 chr13 40073759 40073815 -61799354 + AT_rich Low_complexity Low_complexity 1 56 0 1421 235 54 22 chr13 40074369 40074774 -61798395 - LTR52 LTR ERVL -3 418 1 998 185 5 33 chr13 40077099 40077283 -61795886 - MER20 DNA MER1_type -40 179 1 2264 110 0 0 chr13 40078296 40078597 -61794572 + AluY SINE Alu 1 301 -10 6736 83 1 4 chr13 40078605 40079725 -61793444 + L1PA8 LINE L1 5055 6172 0 24 0 0 0 chr13 40079725 40079749 -61793420 + AT_rich Low_complexity Low_complexity 1 24 0 2207 200 25 35 chr13 40081161 40081650 -61791519 - MER44D DNA MER2_type -3 602 64 397 335 70 22 chr13 40081709 40081894 -61791275 + MIR SINE MIR 19 212 -50 231 364 85 54 chr13 40084413 40084765 -61788404 + L2 LINE L2 255 617 -2697 25 51 0 0 chr13 40084831 40084870 -61788299 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chr13 40087999 40088032 -61785137 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr13 40088630 40088668 -61784501 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 40088884 40088912 -61784257 + AT_rich Low_complexity Low_complexity 1 28 0 835 224 25 5 chr13 40090306 40090507 -61782662 + MER3 DNA MER1_type 5 209 0 347 363 59 34 chr13 40090574 40090929 -61782240 - L2 LINE L2 -19 3294 2931 1328 304 71 34 chr13 40090934 40091500 -61781669 + MLT1E LTR MaLR 6 592 -1 480 340 69 49 chr13 40091538 40091944 -61781225 - L2 LINE L2 -459 2855 2442 397 95 0 27 chr13 40091969 40092043 -61781126 + (TTCCC)n Simple_repeat Simple_repeat 3 74 0 484 300 27 0 chr13 40092183 40092333 -61780836 - MLT1E LTR MaLR -49 544 391 270 116 0 0 chr13 40092410 40092453 -61780716 + (TCCCC)n Simple_repeat Simple_repeat 5 47 0 1884 109 29 4 chr13 40092461 40092735 -61780434 - AluSq SINE Alu -32 281 1 2043 104 10 3 chr13 40093927 40094226 -61778943 - AluSx SINE Alu -9 303 3 1764 144 18 64 chr13 40094333 40094660 -61778509 + AluSx SINE Alu 1 312 0 246 83 0 0 chr13 40094971 40095007 -61778162 + Alu SINE Alu 258 293 -9 245 341 102 28 chr13 40095472 40095648 -61777521 + MER5A DNA MER1_type 1 189 0 1454 191 11 11 chr13 40096118 40096391 -61776778 + AluJo SINE Alu 11 283 -29 261 0 0 0 chr13 40096612 40096641 -61776528 + (CA)n Simple_repeat Simple_repeat 2 30 0 3490 242 77 40 chr13 40099455 40101976 -61771193 - L1MD1 LINE L1 -12 6230 3635 24 32 0 0 chr13 40102079 40102110 -61771059 + AT_rich Low_complexity Low_complexity 1 31 0 32 67 0 0 chr13 40102178 40102238 -61770931 + AT_rich Low_complexity Low_complexity 1 60 0 912 210 126 68 chr13 40102791 40103100 -61770069 + MLT1A1 LTR MaLR 37 363 -2 238 312 35 55 chr13 40103123 40103322 -61769847 + L2 LINE L2 1858 2052 -1262 1007 168 23 37 chr13 40103418 40103632 -61769537 + L1MC3 LINE L1 5683 5893 -1892 2125 128 48 31 chr13 40103678 40104036 -61769133 + THE1B LTR MaLR 1 364 0 10120 110 4 1 chr13 40104036 40105440 -61767729 + THE1B-int LTR MaLR 1 1408 -172 606 307 148 43 chr13 40105446 40106194 -61766975 + L2 LINE L2 2461 3313 0 1711 174 0 0 chr13 40106578 40106843 -61766326 - AluSx SINE Alu -47 265 1 36 23 0 0 chr13 40106880 40106923 -61766246 + AT_rich Low_complexity Low_complexity 1 43 0 248 83 0 0 chr13 40107216 40107252 -61765917 - HSMAR1 DNA Mariner -1251 36 1 414 0 0 0 chr13 40107390 40107436 -61765733 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 276 173 39 chr13 40107523 40107679 -61765490 + L2 LINE L2 3133 3309 -4 964 106 0 183 chr13 40107680 40107915 -61765254 - 7SK RNA RNA 0 193 2 1624 231 153 52 chr13 40108355 40109092 -61764077 + LTR1B LTR ERV1 15 826 0 224 204 0 0 chr13 40109159 40109203 -61763966 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 233 128 23 chr13 40109856 40109942 -61763227 - L2 LINE L2 0 3272 3178 1439 173 42 48 chr13 40109965 40110254 -61762915 - AluSg1 SINE Alu -22 287 1 24 53 0 0 chr13 40110561 40110599 -61762570 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr13 40110882 40110909 -61762260 + AT_rich Low_complexity Low_complexity 1 27 0 319 301 53 26 chr13 40111682 40111795 -61761374 + MIR SINE MIR 130 245 -17 448 320 66 20 chr13 40111818 40112062 -61761107 + MIR SINE MIR 8 262 0 234 333 34 45 chr13 40112537 40112714 -61760455 - L1ME3A LINE L1 -109 6061 5887 2234 107 7 0 chr13 40112717 40113015 -61760154 - AluSx SINE Alu -7 305 6 23 0 0 0 chr13 40113967 40113990 -61759179 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 40114220 40114241 -61758928 + AT_rich Low_complexity Low_complexity 1 21 0 1995 239 31 55 chr13 40115558 40116208 -61756961 + MER76 LTR ERV 1 634 -54 1664 126 15 30 chr13 40116232 40116501 -61756668 - MER50 LTR ERV1 -37 697 433 1386 135 17 4 chr13 40116490 40116720 -61756449 - MER50 LTR ERV1 -501 233 1 * 21 36 0 0 chr13 40118764 40118792 -61754377 + AT_rich Low_complexity Low_complexity 1 28 0 193 182 15 15 chr13 40118926 40118992 -61754177 + (TA)n Simple_repeat Simple_repeat 1 66 0 444 324 33 11 chr13 40119980 40120162 -61753007 + MIR SINE MIR 66 251 -11 313 299 176 49 chr13 40120338 40120746 -61752423 + L1ME4a LINE L1 5536 5995 -126 245 219 85 12 chr13 40121073 40121155 -61752014 + MIR SINE MIR 99 186 -76 2073 143 3 0 chr13 40121172 40121520 -61751649 + AluSx SINE Alu 3 351 0 273 310 39 64 chr13 40121613 40121816 -61751353 - MIR SINE MIR -1 261 64 3145 181 46 25 chr13 40122198 40122833 -61750336 - L1MB3 LINE L1 -36 6147 5500 7486 133 131 37 chr13 40122833 40124385 -61748784 + pTR5 LTR ERV1 742 2438 0 851 190 42 59 chr13 40124393 40124556 -61748613 - L1MB3 LINE L1 -688 5492 5328 1805 111 40 34 chr13 40124556 40124853 -61748316 - AluY SINE Alu -10 301 3 851 190 42 59 chr13 40124853 40125090 -61748079 - L1MB3 LINE L1 -852 5328 5092 335 212 0 59 chr13 40125094 40125201 -61747968 - L1M4 LINE L1 -3856 2526 2426 26 30 0 0 chr13 40125619 40125652 -61747517 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 40127260 40127281 -61745888 + AT_rich Low_complexity Low_complexity 1 21 0 271 289 167 33 chr13 40127606 40127786 -61745383 - MIR SINE MIR -1 261 58 180 388 67 29 chr13 40128054 40128095 -61745074 + MIR SINE MIR 11 49 -213 821 269 14 0 chr13 40128095 40128311 -61744858 + MER20 DNA MER1_type 1 219 0 180 388 67 29 chr13 40128311 40128509 -61744660 + MIR SINE MIR 49 259 -3 41 48 0 0 chr13 40128664 40128726 -61744443 + AT_rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr13 40128920 40128943 -61744226 + AT_rich Low_complexity Low_complexity 1 23 0 257 278 0 0 chr13 40129074 40129146 -61744023 + (TATG)n Simple_repeat Simple_repeat 3 74 0 25 65 0 0 chr13 40129595 40129641 -61743528 + AT_rich Low_complexity Low_complexity 1 46 0 1226 201 4 4 chr13 40130800 40131039 -61742130 + L1PA16 LINE L1 5912 6150 -16 1264 199 33 52 chr13 40131667 40132105 -61741064 + MER52A LTR ERV1 664 1230 -525 295 296 52 35 chr13 40132141 40132256 -61740913 + MER52A LTR ERV1 1232 1348 -407 * 391 266 6 51 chr13 40132230 40132388 -61740781 + LTR28 LTR ERV1 572 722 -298 1813 223 0 40 chr13 40132551 40132973 -61740196 + MER52A LTR ERV1 1351 1755 0 392 66 0 16 chr13 40132973 40133034 -61740135 + (TA)n Simple_repeat Simple_repeat 1 60 0 242 182 0 91 chr13 40133034 40133144 -61740025 - L1MC4 LINE L1 -1333 6709 6610 22 56 0 0 chr13 40133314 40133350 -61739819 + AT_rich Low_complexity Low_complexity 1 36 0 2133 121 3 0 chr13 40133464 40133762 -61739407 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr13 40135247 40135272 -61737897 + AT_rich Low_complexity Low_complexity 1 25 0 2178 113 0 0 chr13 40136127 40136419 -61736750 + AluSc SINE Alu 1 292 -17 1984 172 105 0 chr13 40136970 40137359 -61735810 - MSTB1 LTR MaLR -2 430 1 1854 162 0 0 chr13 40137544 40137858 -61735311 + L1 LINE L1 4875 5188 -958 23 0 0 0 chr13 40138963 40138986 -61734183 + AT_rich Low_complexity Low_complexity 1 23 0 2972 147 143 22 chr13 40139592 40140223 -61732946 + MER39 LTR ERV1 1 707 0 49 76 0 0 chr13 40140411 40140516 -61732653 + AT_rich Low_complexity Low_complexity 1 105 0 2334 87 3 6 chr13 40140874 40141186 -61731983 + AluSx SINE Alu 1 311 -1 7005 33 1 2 chr13 40141517 40142374 -61730795 - L1P LINE L1 -932 5214 4359 * 7123 17 2 0 chr13 40142373 40143214 -61729955 + L1PA4 LINE L1 5307 6150 -5 2214 143 110 7 chr13 40143216 40143634 -61729535 - MER57-int LTR ERV1 -3561 3976 3516 21 71 0 0 chr13 40193755 40193797 -61679372 + AT_rich Low_complexity Low_complexity 1 42 0 198 0 0 0 chr13 40195715 40195737 -61677432 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 381 229 0 0 chr13 40196643 40196713 -61676456 + MER30 DNA MER1_type 161 230 0 914 329 82 2 chr13 40196772 40197198 -61675971 - HERV16 LTR ERVL -3603 1393 934 482 379 17 4 chr13 40197230 40197470 -61675699 - LTR16A LTR ERVL -153 297 55 317 322 55 35 chr13 40197514 40197768 -61675401 + L1M4 LINE L1 3209 3457 -2689 2044 81 0 0 chr13 40197768 40198040 -61675129 + L1PA6 LINE L1 5883 6154 0 317 322 55 35 chr13 40198040 40198298 -61674871 + L1M4 LINE L1 3457 3731 -2415 28 48 0 0 chr13 40198312 40198354 -61674815 + AT_rich Low_complexity Low_complexity 1 42 0 231 303 14 32 chr13 40198374 40198592 -61674577 + L1M4 LINE L1 5018 5231 -915 3563 129 15 26 chr13 40198760 40199410 -61673759 - L1M1 LINE L1 -4379 3186 2544 6317 222 23 9 chr13 40199412 40200719 -61672450 - L1M1 LINE L1 -6227 1338 14 1928 152 0 0 chr13 40201793 40202089 -61671080 + AluSx SINE Alu 1 296 -16 1198 250 24 10 chr13 40202184 40203202 -61669967 + L1 LINE L1 2457 3499 -2647 225 182 0 0 chr13 40203194 40203238 -61669931 + L1 LINE L1 3287 3330 -2816 * 204 40 0 0 chr13 40203711 40203736 -61669433 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 5544 108 21 1 chr13 40203736 40205087 -61668082 - L1PA10 LINE L1 -21 6147 4768 865 71 0 0 chr13 40205087 40205195 -61667974 + L1PA5 LINE L1 6030 6141 -13 22 0 0 0 chr13 40205211 40205233 -61667936 + AT_rich Low_complexity Low_complexity 1 22 0 201 211 0 0 chr13 40205396 40205453 -61667716 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 742 273 83 27 chr13 40205471 40205868 -61667301 + MLT1J2 LTR MaLR 1 436 -10 3490 247 88 19 chr13 40206194 40208196 -61664973 - L1MC/D LINE L1 -487 5755 3635 24 32 0 0 chr13 40208299 40208330 -61664839 + AT_rich Low_complexity Low_complexity 1 31 0 32 67 0 0 chr13 40208398 40208458 -61664711 + AT_rich Low_complexity Low_complexity 1 60 0 912 210 126 68 chr13 40209011 40209320 -61663849 + MLT1A1 LTR MaLR 37 363 -2 238 312 35 55 chr13 40209343 40209542 -61663627 + L2 LINE L2 1858 2052 -1262 1007 168 23 37 chr13 40209638 40209852 -61663317 + L1MC3 LINE L1 5683 5893 -1892 2125 128 48 31 chr13 40209898 40210256 -61662913 + THE1B LTR MaLR 1 364 0 10120 110 4 1 chr13 40210256 40211660 -61661509 + THE1B-int LTR MaLR 1 1408 -172 606 307 148 43 chr13 40211666 40212414 -61660755 + L2 LINE L2 2461 3313 0 1711 174 0 0 chr13 40212798 40213063 -61660106 - AluSx SINE Alu -47 265 1 36 23 0 0 chr13 40213100 40213143 -61660026 + AT_rich Low_complexity Low_complexity 1 43 0 248 83 0 0 chr13 40213436 40213472 -61659697 - HSMAR1 DNA Mariner -1251 36 1 414 0 0 0 chr13 40213610 40213656 -61659513 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 276 173 39 chr13 40213743 40213899 -61659270 + L2 LINE L2 3133 3309 -4 964 106 0 183 chr13 40213900 40214135 -61659034 - 7SK RNA RNA 0 193 2 1624 231 153 52 chr13 40214575 40215312 -61657857 + LTR1B LTR ERV1 15 826 0 224 204 0 0 chr13 40215379 40215423 -61657746 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 233 128 23 chr13 40216076 40216162 -61657007 - L2 LINE L2 0 3272 3178 1439 173 42 48 chr13 40216185 40216474 -61656695 - AluSg1 SINE Alu -22 287 1 24 53 0 0 chr13 40216781 40216819 -61656350 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr13 40217102 40217129 -61656040 + AT_rich Low_complexity Low_complexity 1 27 0 319 301 53 26 chr13 40217902 40218015 -61655154 + MIR SINE MIR 130 245 -17 448 320 66 20 chr13 40218038 40218282 -61654887 + MIR SINE MIR 8 262 0 234 333 34 45 chr13 40218757 40218934 -61654235 - L1ME3A LINE L1 -109 6061 5887 2234 107 7 0 chr13 40218937 40219235 -61653934 - AluSx SINE Alu -7 305 6 23 0 0 0 chr13 40220187 40220210 -61652959 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 40220440 40220461 -61652708 + AT_rich Low_complexity Low_complexity 1 21 0 1995 239 31 55 chr13 40221778 40222428 -61650741 + MER76 LTR ERV 1 634 -54 1664 126 15 30 chr13 40222452 40222721 -61650448 - MER50 LTR ERV1 -37 697 433 1386 135 17 4 chr13 40222710 40222940 -61650229 - MER50 LTR ERV1 -501 233 1 * 21 36 0 0 chr13 40224984 40225012 -61648157 + AT_rich Low_complexity Low_complexity 1 28 0 193 182 15 15 chr13 40225146 40225212 -61647957 + (TA)n Simple_repeat Simple_repeat 1 66 0 444 324 33 11 chr13 40226200 40226382 -61646787 + MIR SINE MIR 66 251 -11 313 299 176 49 chr13 40226558 40226966 -61646203 + L1ME4a LINE L1 5536 5995 -126 245 219 85 12 chr13 40227293 40227375 -61645794 + MIR SINE MIR 99 186 -76 2073 143 3 0 chr13 40227392 40227740 -61645429 + AluSx SINE Alu 3 351 0 273 310 39 64 chr13 40227833 40228036 -61645133 - MIR SINE MIR -1 261 64 3145 181 46 25 chr13 40228418 40229053 -61644116 - L1MB3 LINE L1 -36 6147 5500 7486 133 131 37 chr13 40229053 40230605 -61642564 + pTR5 LTR ERV1 742 2438 0 851 190 42 59 chr13 40230613 40230776 -61642393 - L1MB3 LINE L1 -688 5492 5328 1805 111 40 34 chr13 40230776 40231073 -61642096 - AluY SINE Alu -10 301 3 851 190 42 59 chr13 40231073 40231310 -61641859 - L1MB3 LINE L1 -852 5328 5092 335 212 0 59 chr13 40231314 40231421 -61641748 - L1M4 LINE L1 -3856 2526 2426 26 30 0 0 chr13 40231839 40231872 -61641297 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 40233480 40233501 -61639668 + AT_rich Low_complexity Low_complexity 1 21 0 271 289 167 33 chr13 40233826 40234006 -61639163 - MIR SINE MIR -1 261 58 180 388 67 29 chr13 40234274 40234315 -61638854 + MIR SINE MIR 11 49 -213 821 269 14 0 chr13 40234315 40234531 -61638638 + MER20 DNA MER1_type 1 219 0 180 388 67 29 chr13 40234531 40234729 -61638440 + MIR SINE MIR 49 259 -3 41 48 0 0 chr13 40234884 40234946 -61638223 + AT_rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr13 40235140 40235163 -61638006 + AT_rich Low_complexity Low_complexity 1 23 0 257 278 0 0 chr13 40235294 40235366 -61637803 + (TATG)n Simple_repeat Simple_repeat 3 74 0 25 65 0 0 chr13 40235815 40235861 -61637308 + AT_rich Low_complexity Low_complexity 1 46 0 1226 201 4 4 chr13 40237020 40237259 -61635910 + L1PA16 LINE L1 5912 6150 -16 1264 199 33 52 chr13 40237887 40238325 -61634844 + MER52A LTR ERV1 664 1230 -525 295 296 52 35 chr13 40238361 40238476 -61634693 + MER52A LTR ERV1 1232 1348 -407 * 391 266 6 51 chr13 40238450 40238608 -61634561 + LTR28 LTR ERV1 572 722 -298 1813 223 0 40 chr13 40238771 40239193 -61633976 + MER52A LTR ERV1 1351 1755 0 392 66 0 16 chr13 40239193 40239254 -61633915 + (TA)n Simple_repeat Simple_repeat 1 60 0 242 182 0 91 chr13 40239254 40239364 -61633805 - L1MC4 LINE L1 -1333 6709 6610 22 56 0 0 chr13 40239534 40239570 -61633599 + AT_rich Low_complexity Low_complexity 1 36 0 2133 121 3 0 chr13 40239684 40239982 -61633187 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr13 40241467 40241492 -61631677 + AT_rich Low_complexity Low_complexity 1 25 0 2178 113 0 0 chr13 40242346 40242638 -61630531 + AluSc SINE Alu 1 292 -17 1984 172 105 0 chr13 40243189 40243578 -61629591 - MSTB1 LTR MaLR -2 430 1 1854 162 0 0 chr13 40243763 40244077 -61629092 + L1 LINE L1 4875 5188 -958 23 0 0 0 chr13 40245182 40245205 -61627964 + AT_rich Low_complexity Low_complexity 1 23 0 2972 147 143 22 chr13 40245811 40246442 -61626727 + MER39 LTR ERV1 1 707 0 49 76 0 0 chr13 40246630 40246735 -61626434 + AT_rich Low_complexity Low_complexity 1 105 0 2334 87 3 6 chr13 40247093 40247405 -61625764 + AluSx SINE Alu 1 311 -1 3870 246 71 33 chr13 40247766 40249150 -61624019 - Charlie1a DNA MER1_type 0 1455 20 219 273 202 0 chr13 40250808 40250907 -61622262 - L2 LINE L2 -16 3297 3179 429 323 153 23 chr13 40251300 40251743 -61621426 - L2 LINE L2 -874 2440 1940 2451 218 8 4 chr13 40251955 40252427 -61620742 + MLT2B2 LTR ERVL 2 475 -40 21 0 0 0 chr13 40252640 40252661 -61620508 + AT_rich Low_complexity Low_complexity 1 21 0 9881 32 3 2 chr13 40253808 40255325 -61617844 - L1P1 LINE L1 -458 5697 4178 * 15542 41 0 0 chr13 40255321 40257262 -61615907 + L1P LINE L1 1751 3691 -2455 27 49 0 0 chr13 40257830 40257871 -61615298 + AT_rich Low_complexity Low_complexity 1 41 0 25 65 0 0 chr13 40259475 40259521 -61613648 + AT_rich Low_complexity Low_complexity 1 46 0 279 231 42 63 chr13 40259916 40260059 -61613110 - L1M4 LINE L1 -2164 3982 3843 25 0 0 0 chr13 40260365 40260390 -61612779 + AT_rich Low_complexity Low_complexity 1 25 0 1185 293 129 27 chr13 40260802 40261330 -61611839 + MLT1E LTR MaLR 1 492 -13 248 297 116 22 chr13 40261379 40261517 -61611652 + MLT1E-int LTR MaLR 49 199 -1172 * 528 260 25 15 chr13 40261501 40261697 -61611472 + MLT1E-int LTR MaLR 301 498 -873 245 365 9 0 chr13 40261902 40262009 -61611160 + MLT1E-int LTR MaLR 777 884 -487 2324 128 34 3 chr13 40262117 40262470 -61610699 - THE1B LTR MaLR 0 364 1 2812 133 5 7 chr13 40262470 40262898 -61610271 - THE1B-int LTR MaLR 0 1580 1154 1750 142 68 9 chr13 40262898 40263222 -61609947 + MER61A LTR ERV1 1 343 0 2368 174 35 55 chr13 40263222 40263554 -61609615 + MER61A-int LTR ERV1 1 338 -4879 830 102 78 0 chr13 40263554 40263682 -61609487 + MER85 DNA T2_type 2 139 0 2368 174 35 55 chr13 40263682 40263810 -61609359 + MER61A-int LTR ERV1 338 449 -4768 2470 62 3 0 chr13 40263810 40264117 -61609052 - AluY SINE Alu -3 308 1 2368 174 35 55 chr13 40264117 40264234 -61608935 + MER61A-int LTR ERV1 449 567 -4650 * 3184 110 77 6 chr13 40264204 40264724 -61608445 + MER61A-int LTR ERV1 1384 1940 -3277 1089 207 22 4 chr13 40264936 40265168 -61608001 - MER46A DNA MER2_type 0 236 1 1673 216 14 45 chr13 40265186 40265226 -61607943 - MLT2D LTR ERVL 0 414 374 360 43 0 0 chr13 40265226 40265272 -61607897 + (TG)n Simple_repeat Simple_repeat 2 47 0 1673 216 14 45 chr13 40265272 40265658 -61607511 - MLT2D LTR ERVL -40 374 1 2042 210 184 11 chr13 40265658 40265796 -61607373 - ERVL-D LTR ERVL -8 5756 5643 2541 106 57 7 chr13 40265796 40266201 -61606968 + MSTA LTR MaLR 4 428 0 2042 210 184 11 chr13 40266201 40266590 -61606579 - ERVL-D LTR ERVL -121 5643 5138 1042 187 100 79 chr13 40266593 40266758 -61606411 + MLT1A2 LTR MaLR 1 161 -213 1727 168 18 0 chr13 40266758 40267043 -61606126 + AluJb SINE Alu 7 296 -16 1042 187 100 79 chr13 40267043 40267338 -61605831 + MLT1A2 LTR MaLR 161 374 0 1869 205 16 16 chr13 40267341 40267722 -61605447 - ERVL-D LTR ERVL -628 5136 4756 1157 203 13 39 chr13 40267864 40268169 -61605000 + L1MA9 LINE L1 6015 6311 -1 2066 209 92 4 chr13 40270365 40270833 -61602336 + LTR22 LTR ERVK 1 509 0 1120 180 99 123 chr13 40271562 40271967 -61601202 + MSTD LTR MaLR 2 396 0 188 397 17 34 chr13 40272044 40272223 -61600946 + L2 LINE L2 1970 2145 -1169 204 161 48 16 chr13 40272801 40272863 -61600306 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 36 0 0 chr13 40273436 40273464 -61599705 + AT_rich Low_complexity Low_complexity 1 28 0 1913 240 63 25 chr13 40276248 40276723 -61596446 - MLT1D LTR MaLR -12 493 1 229 253 160 0 chr13 40276951 40277026 -61596143 + L1MC4 LINE L1 6616 6702 -1340 269 309 0 12 chr13 40277028 40277112 -61596057 + (TA)n Simple_repeat Simple_repeat 1 83 0 22 80 0 0 chr13 40277139 40277189 -61595980 + AT_rich Low_complexity Low_complexity 1 50 0 1333 241 0 10 chr13 40277460 40277750 -61595419 - AluJo SINE Alu -25 287 1 737 114 73 0 chr13 40279252 40279375 -61593794 + L1MA1 LINE L1 6171 6302 0 444 357 16 44 chr13 40279456 40279638 -61593531 - L3 LINE CR1 -930 647 471 2480 196 58 7 chr13 40279638 40280211 -61592958 - L1 LINE L1 -1624 4522 3921 3988 171 33 14 chr13 40280253 40281133 -61592036 + L1M2 LINE L1 4466 5389 -902 1631 209 9 20 chr13 40281133 40281482 -61591687 - MER7A DNA MER2_type 0 346 4 3988 171 33 14 chr13 40281482 40281920 -61591249 + L1M2 LINE L1 5389 5817 -474 2129 94 6 61 chr13 40282041 40282369 -61590800 - AluSx SINE Alu -2 310 1 425 255 85 55 chr13 40282387 40282587 -61590582 + L1MC4a LINE L1 5721 5926 -1882 723 126 105 32 chr13 40282587 40282777 -61590392 + L1MA7 LINE L1 6086 6289 -2 434 333 107 19 chr13 40283316 40283577 -61589592 + MLT1I LTR MaLR 108 391 -18 836 264 110 22 chr13 40284233 40284506 -61588663 + LTR40a LTR ERVL 6 302 -217 323 257 46 46 chr13 40287165 40287274 -61585895 + MLT1E1 LTR MaLR 33 141 -513 9372 41 1 0 chr13 40288217 40290134 -61583035 - L1PA5 LINE L1 -3 6151 4233 1698 42 14 1 chr13 40290696 40291455 -61581714 - L1PA5 LINE L1 0 6154 5307 * 7835 26 0 1 chr13 40291454 40292391 -61580778 + L1PA5 LINE L1 4359 5294 -852 279 371 61 25 chr13 40292478 40292675 -61580494 + L2 LINE L2 1269 1472 -1842 23 33 0 0 chr13 40292812 40292842 -61580327 + AT_rich Low_complexity Low_complexity 1 30 0 1484 221 0 3 chr13 40292905 40293195 -61579974 + AluJo SINE Alu 5 293 -19 239 266 104 40 chr13 40293246 40293419 -61579750 + L1ME3A LINE L1 1526 1709 -4833 461 167 12 0 chr13 40293573 40293657 -61579512 - AluS SINE Alu -228 85 1 231 305 82 50 chr13 40293665 40294249 -61578920 + L1ME3A LINE L1 5170 5772 -872 1400 281 145 22 chr13 40294343 40294450 -61578719 + L1ME3A LINE L1 5797 5890 -778 1393 188 43 0 chr13 40294450 40294726 -61578443 + L1PB4 LINE L1 5869 6156 0 1400 281 145 22 chr13 40294726 40295377 -61577792 + L1ME3A LINE L1 5890 6648 -20 4374 188 10 5 chr13 40295975 40296842 -61576327 - L1P LINE L1 -1107 5039 4168 * 7297 222 16 14 chr13 40296839 40298557 -61574612 + L1P LINE L1 1729 3449 -2697 10121 91 5 30 chr13 40298661 40300178 -61572991 + MER61-int LTR ERV1 1993 3470 -1747 9058 129 13 16 chr13 40300224 40301847 -61571322 + MER61-int LTR ERV1 3470 5132 -85 5989 143 46 14 chr13 40301950 40302933 -61570236 - THE1B-int LTR MaLR -565 1015 2 2304 135 11 8 chr13 40302934 40303296 -61569873 - THE1B LTR MaLR 0 364 2 24 0 0 0 chr13 40303462 40303486 -61569683 + AT_rich Low_complexity Low_complexity 1 24 0 289 303 119 0 chr13 40303560 40303669 -61569500 + MLT1A2 LTR MaLR 1 122 -471 255 330 19 10 chr13 40303987 40304090 -61569079 - L1MEd LINE L1 -5423 696 593 1007 228 8 51 chr13 40305128 40305146 -61568023 + MLT1A2 LTR MaLR 132 149 -225 1189 233 69 23 chr13 40305146 40305493 -61567676 + MLT1A1 LTR MaLR 1 363 -2 1007 228 8 51 chr13 40305493 40305728 -61567441 + MLT1A2 LTR MaLR 149 374 0 678 212 178 0 chr13 40305728 40305969 -61567200 + MLT1A1-int LTR MaLR 1 401 -970 2798 139 9 0 chr13 40305969 40306399 -61566770 + MER57B LTR ERV1 1 434 0 4536 153 16 5 chr13 40306399 40307274 -61565895 + MER57B-int LTR ERV1 1 886 -5060 330 143 0 0 chr13 40307271 40307320 -61565849 + MER57-int LTR ERV1 2581 2629 -4908 * 5769 145 79 19 chr13 40307316 40308389 -61564780 + MER57-int LTR ERV1 2167 3304 -2642 7364 34 1 3 chr13 40308392 40310047 -61563122 - L1PA4 LINE L1 -5 6150 4497 7045 31 1 0 chr13 40310047 40310895 -61562274 + L1PA4 LINE L1 3637 4485 -1661 1096 246 49 20 chr13 40310893 40311283 -61561886 - L1M4 LINE L1 -782 5364 4964 * 1233 238 82 12 chr13 40311290 40311663 -61561506 + MLT2B1 LTR ERVL 5 397 0 255 125 0 0 chr13 40311681 40311721 -61561448 + (TG)n Simple_repeat Simple_repeat 1 40 0 2158 233 38 28 chr13 40311721 40312400 -61560769 - L1M4 LINE L1 -1202 4944 4259 467 360 80 0 chr13 40312710 40312910 -61560259 + MIR SINE MIR 11 226 -36 812 244 0 0 chr13 40313034 40313202 -61559967 - AluJb SINE Alu -23 289 122 205 341 119 49 chr13 40313218 40313444 -61559725 + L2 LINE L2 2619 2860 -454 228 121 0 86 chr13 40313497 40313555 -61559614 + (CA)n Simple_repeat Simple_repeat 2 54 0 1923 141 7 3 chr13 40313697 40313995 -61559174 + AluSx SINE Alu 1 299 -13 476 164 0 0 chr13 40314256 40314351 -61558818 + AluSp/q SINE Alu 211 305 0 241 387 57 0 chr13 40314351 40314457 -61558712 + L2 LINE L2 3161 3272 0 468 312 134 27 chr13 40315586 40315878 -61557291 - L2 LINE L2 -4 3309 2987 215 192 154 26 chr13 40316001 40316079 -61557090 - L2 LINE L2 -902 2412 2325 506 178 10 2 chr13 40316083 40316192 -61556977 + L1P5 LINE L1 5494 5601 -555 24 89 0 30 chr13 40316268 40316369 -61556800 + AT_rich Low_complexity Low_complexity 1 98 0 3346 177 11 6 chr13 40316484 40317110 -61556059 + L1P LINE L1 3544 4172 -1974 1355 273 52 47 chr13 40317748 40318454 -61554715 + L1ME3A LINE L1 5461 6170 0 231 279 57 57 chr13 40320020 40320178 -61552991 - L2 LINE L2 -65 3248 3091 1187 231 66 55 chr13 40320183 40320637 -61552532 + MLT1C LTR MaLR 9 467 0 430 333 136 9 chr13 40320959 40321187 -61551982 + MIR SINE MIR 6 262 0 254 28 0 28 chr13 40322824 40322860 -61550309 + (TA)n Simple_repeat Simple_repeat 2 36 0 195 372 0 43 chr13 40322983 40323077 -61550092 + MIR SINE MIR 62 151 -57 22 0 0 0 chr13 40323810 40323832 -61549337 + AT_rich Low_complexity Low_complexity 1 22 0 226 313 149 60 chr13 40325102 40325450 -61547719 + L2 LINE L2 2581 2959 -355 795 314 124 57 chr13 40326411 40326609 -61546560 + L2 LINE L2 1762 1945 -1369 2107 107 0 0 chr13 40326609 40326898 -61546271 - AluSg SINE Alu -21 289 1 795 314 124 57 chr13 40326898 40327448 -61545721 + L2 LINE L2 1945 2560 -754 245 333 29 0 chr13 40327622 40327760 -61545409 + HAL1 LINE L1 1538 1679 -828 374 146 131 46 chr13 40328086 40328216 -61544953 - LTR19A LTR ERV1 -16 470 330 270 293 143 15 chr13 40329460 40329593 -61543576 + MLT1H1 LTR MaLR 125 274 -281 269 254 0 15 chr13 40329776 40329843 -61543326 + L2 LINE L2 2728 2793 -521 29 60 0 0 chr13 40330688 40330738 -61542431 + AT_rich Low_complexity Low_complexity 1 50 0 246 253 0 88 chr13 40331029 40331120 -61542049 - MIR SINE MIR -70 192 110 22 0 0 0 chr13 40331363 40331385 -61541784 + AT_rich Low_complexity Low_complexity 1 22 0 39 60 0 0 chr13 40331466 40331533 -61541636 + AT_rich Low_complexity Low_complexity 1 67 0 270 374 68 14 chr13 40331645 40331792 -61541377 + MIR SINE MIR 8 162 -100 348 283 21 0 chr13 40333437 40333582 -61539587 + L1MC4a LINE L1 5738 5885 -1923 469 360 68 34 chr13 40334095 40334476 -61538693 - MLT1I LTR MaLR -15 394 1 213 277 77 0 chr13 40334614 40334679 -61538490 + MIR SINE MIR 41 110 -152 185 234 31 31 chr13 40336114 40336178 -61536991 - MIR SINE MIR -79 183 120 407 231 101 77 chr13 40336340 40336509 -61536660 - MER20 DNA MER1_type -1 218 46 25 75 0 0 chr13 40336640 40336693 -61536476 + AT_rich Low_complexity Low_complexity 1 53 0 628 272 72 102 chr13 40337356 40337886 -61535283 - L1ME LINE L1 -5547 523 10 25 31 0 0 chr13 40338609 40338641 -61534528 + AT_rich Low_complexity Low_complexity 1 32 0 2034 110 34 3 chr13 40339358 40339649 -61533520 + AluSx SINE Alu 1 300 -12 674 160 14 123 chr13 40339690 40339902 -61533267 - L1MC3 LINE L1 -8 7777 7589 206 309 24 111 chr13 40341656 40341774 -61531395 - MIR SINE MIR -28 234 140 2126 97 28 0 chr13 40341774 40342064 -61531105 + AluSg SINE Alu 1 298 -12 206 309 24 111 chr13 40342064 40342152 -61531017 - MIR SINE MIR -122 140 46 22 0 0 0 chr13 40342976 40342998 -61530171 + AT_rich Low_complexity Low_complexity 1 22 0 2492 66 0 0 chr13 40343418 40343723 -61529446 - AluY SINE Alu -6 305 1 24 32 0 0 chr13 40344377 40344408 -61528761 + AT_rich Low_complexity Low_complexity 1 31 0 12209 91 10 4 chr13 40345330 40347868 -61525301 - L1PA7 LINE L1 -2 6152 3608 237 65 0 0 chr13 40347868 40347899 -61525270 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 2660 152 33 0 chr13 40348414 40348842 -61524327 - MER41-int LTR ERV1 -792 5154 4713 3480 37 5 5 chr13 40348842 40349278 -61523891 - L1P LINE L1 -2045 4101 3666 22 0 0 0 chr13 40349887 40349909 -61523260 + AT_rich Low_complexity Low_complexity 1 22 0 2331 50 40 10 chr13 40350337 40350637 -61522532 + AluY SINE Alu 1 309 -2 441 0 0 0 chr13 40350698 40350747 -61522422 + (CA)n Simple_repeat Simple_repeat 2 50 0 1265 218 24 34 chr13 40353326 40353624 -61519545 + AluJo SINE Alu 1 295 -7 314 272 64 79 chr13 40354642 40354844 -61518325 - L2 LINE L2 -455 2859 2661 29 0 0 0 chr13 40354901 40354930 -61518239 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 40355480 40355506 -61517663 + AT_rich Low_complexity Low_complexity 1 26 0 941 167 57 0 chr13 40355966 40356193 -61516976 - L1MA9 LINE L1 -1 6311 6072 1236 243 13 13 chr13 40356194 40356511 -61516658 - L1 LINE L1 -2234 4148 3832 * 2034 249 117 61 chr13 40356502 40356889 -61516280 - L1 LINE L1 -3826 2556 2192 2226 116 0 0 chr13 40356889 40357191 -61515978 + AluSx SINE Alu 3 304 -8 2034 249 117 61 chr13 40357191 40358480 -61514689 - L1 LINE L1 -4190 2192 777 3744 246 28 52 chr13 40358494 40359602 -61513567 + MSTD-int LTR MaLR 561 1730 -5 596 233 52 1 chr13 40359613 40359752 -61513417 + MSTD LTR MaLR 3 162 -212 1026 106 0 7 chr13 40359758 40359900 -61513269 + AluSq/x SINE Alu 1 141 -171 1860 104 7 58 chr13 40359904 40360049 -61513120 + AluSx SINE Alu 2 124 -188 1669 120 117 15 chr13 40360049 40360323 -61512846 + AluSg1 SINE Alu 2 303 -6 1860 104 7 58 chr13 40360323 40360485 -61512684 + AluSx SINE Alu 124 293 -19 724 247 46 0 chr13 40360503 40360677 -61512492 + MSTD LTR MaLR 215 396 0 30 59 0 0 chr13 40360698 40360749 -61512420 + AT_rich Low_complexity Low_complexity 1 51 0 945 266 52 46 chr13 40362152 40362696 -61510473 - L1ME1 LINE L1 -10 6225 5679 * 1939 262 81 41 chr13 40362678 40362778 -61510391 - L1ME1 LINE L1 -3267 2948 2854 2045 127 3 0 chr13 40362778 40363097 -61510072 - AluSp SINE Alu 0 320 1 1939 262 81 41 chr13 40363097 40365037 -61508132 - L1ME1 LINE L1 -3361 2854 855 610 295 47 31 chr13 40365026 40365284 -61507885 - L1ME1 LINE L1 -6097 299 38 * 187 228 175 0 chr13 40365284 40365341 -61507828 - L3 LINE CR1 -893 684 618 238 255 191 0 chr13 40366149 40366290 -61506879 + L1ME3A LINE L1 854 1021 -4887 510 299 40 68 chr13 40366319 40366920 -61506249 + L1ME3A LINE L1 1103 1870 -4737 695 303 100 63 chr13 40367435 40368394 -61504775 + L1ME3A LINE L1 2411 3413 -3013 665 309 112 19 chr13 40368641 40368875 -61504294 + L1ME3A LINE L1 5598 5809 -641 222 37 0 0 chr13 40368875 40368902 -61504267 + (TG)n Simple_repeat Simple_repeat 2 28 0 665 309 112 19 chr13 40368902 40369364 -61503805 + L1ME3A LINE L1 5809 6441 -9 230 224 0 60 chr13 40369629 40369696 -61503473 + GA-rich Low_complexity Low_complexity 2 64 0 23 0 0 0 chr13 40369789 40369812 -61503357 + AT_rich Low_complexity Low_complexity 1 23 0 1753 152 3 37 chr13 40370062 40370384 -61502785 - AluSq SINE Alu -2 311 1 1949 288 44 14 chr13 40370841 40371571 -61501598 + HsTC2 DNA Tc2 2 753 -1145 553 273 53 36 chr13 40371578 40371915 -61501254 + HsTC2 DNA Tc2 1281 1799 -99 5301 124 56 29 chr13 40372670 40373909 -61499260 + L1PB2 LINE L1 4878 6150 -1 1077 147 46 0 chr13 40374091 40374309 -61498860 - L1MA8 LINE L1 -5 6286 6059 207 0 0 0 chr13 40375429 40375452 -61497717 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1197 206 3 87 chr13 40375456 40375766 -61497403 - AluJb SINE Alu -17 285 2 3575 145 0 7 chr13 40376920 40377507 -61495662 - L1P LINE L1 -869 5277 4695 5580 100 40 1 chr13 40377538 40378338 -61494831 + L1PA10 LINE L1 5338 6168 0 23 0 0 0 chr13 40378545 40378568 -61494601 + AT_rich Low_complexity Low_complexity 1 23 0 259 250 0 56 chr13 40378568 40378728 -61494441 + A-rich Low_complexity Low_complexity 4 154 0 480 339 94 51 chr13 40378750 40379358 -61493811 + HAL1b LINE L1 1 634 -714 1864 120 0 28 chr13 40379396 40379679 -61493490 + AluSx SINE Alu 1 275 -37 594 0 0 0 chr13 40379686 40379752 -61493417 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 6578 194 43 18 chr13 40379752 40381476 -61491693 - L1M1 LINE L1 -743 6822 5183 * 17382 175 74 21 chr13 40381472 40383629 -61489540 - L1M1 LINE L1 -3821 3744 1326 620 62 0 0 chr13 40383629 40383709 -61489460 + L1PA5 LINE L1 6075 6154 0 17382 175 74 21 chr13 40383709 40385092 -61488077 - L1M1 LINE L1 -6239 1326 17 186 224 0 0 chr13 40385152 40385201 -61487968 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 33 0 0 chr13 40385296 40385326 -61487843 + AT_rich Low_complexity Low_complexity 1 30 0 235 419 29 12 chr13 40387702 40387874 -61485295 - MIR SINE MIR -26 236 62 1594 83 9 9 chr13 40388001 40388229 -61484940 + L1PA7 LINE L1 5882 6109 -45 331 321 121 37 chr13 40388248 40388438 -61484731 - MIR SINE MIR -56 206 1 453 170 89 18 chr13 40389992 40390104 -61483065 + L1MA8 LINE L1 6166 6285 -6 232 220 0 30 chr13 40390108 40390208 -61482961 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 34 55 0 0 chr13 40390249 40390304 -61482865 + AT_rich Low_complexity Low_complexity 1 55 0 221 198 57 19 chr13 40390359 40390465 -61482704 + (TA)n Simple_repeat Simple_repeat 1 110 0 * 294 195 46 46 chr13 40390415 40390589 -61482580 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 319 151 0 47 chr13 40390687 40390773 -61482396 + (TA)n Simple_repeat Simple_repeat 1 82 0 205 190 17 35 chr13 40390849 40390907 -61482262 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 30 45 0 0 chr13 40391886 40391930 -61481239 + AT_rich Low_complexity Low_complexity 1 44 0 776 194 10 135 chr13 40393963 40394251 -61478918 + MSTB2 LTR MaLR 2 259 -179 2474 50 0 0 chr13 40394324 40394623 -61478546 + AluY SINE Alu 1 299 -12 470 264 68 0 chr13 40394627 40394775 -61478394 + MSTB2 LTR MaLR 300 457 0 2230 120 0 3 chr13 40395133 40395441 -61477728 + AluSq SINE Alu 1 307 -6 560 321 60 45 chr13 40395766 40396315 -61476854 - MERVL LTR ERVL -3070 2415 1859 318 350 56 40 chr13 40396491 40396865 -61476304 - MERVL LTR ERVL -3418 1578 1199 310 343 59 35 chr13 40397211 40397500 -61475669 - L1ME LINE L1 -298 5823 5528 751 293 85 42 chr13 40397776 40398810 -61474359 + L1MDa LINE L1 1048 2126 -4414 347 113 16 0 chr13 40398835 40398897 -61474272 + (TA)n Simple_repeat Simple_repeat 2 64 0 2490 58 0 3 chr13 40399101 40399413 -61473756 + AluY SINE Alu 1 311 0 426 20 0 0 chr13 40399750 40399801 -61473368 + (CA)n Simple_repeat Simple_repeat 2 52 0 337 303 68 61 chr13 40401152 40401496 -61471673 + MLT1I LTR MaLR 76 387 -22 229 330 23 11 chr13 40403209 40403297 -61469872 + L2 LINE L2 3191 3279 -34 225 154 0 0 chr13 40403341 40403380 -61469789 + A-rich Low_complexity Low_complexity 1 39 0 1893 117 3 0 chr13 40403870 40404152 -61469017 - L1PA7 LINE L1 -1 6153 5871 2272 204 38 106 chr13 40404154 40404912 -61468257 + L1MC3 LINE L1 6874 7580 -205 947 186 15 10 chr13 40404959 40405163 -61468006 + AluJo SINE Alu 1 205 -107 376 110 0 13 chr13 40405214 40405289 -61467880 + Alu SINE Alu 220 280 -20 180 303 42 21 chr13 40405415 40405557 -61467612 + L2 LINE L2 2244 2388 -926 296 286 70 41 chr13 40406860 40407031 -61466138 + HAL1 LINE L1 1428 1603 -904 392 276 64 0 chr13 40407751 40407907 -61465262 - L1M4 LINE L1 -2055 4091 3926 1272 217 32 11 chr13 40408632 40408792 -61464377 - AluJo SINE Alu -29 283 128 483 33 0 0 chr13 40408792 40408853 -61464316 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1826 151 21 0 chr13 40408853 40409132 -61464037 - AluSx SINE Alu -27 285 1 1272 217 32 11 chr13 40409132 40409247 -61463922 - AluJo SINE Alu -183 129 1 21 0 0 0 chr13 40409312 40409333 -61463836 + AT_rich Low_complexity Low_complexity 1 21 0 1971 128 104 3 chr13 40409381 40409431 -61463738 - L1PA12 LINE L1 -180 5988 5939 829 258 119 21 chr13 40409431 40409768 -61463401 - L1MA4A LINE L1 -365 5938 5569 302 298 40 33 chr13 40409769 40409920 -61463249 - L1MA4A LINE L1 -758 5426 5275 405 214 34 39 chr13 40410643 40410804 -61462365 - L1M LINE L1 -736 5426 5275 574 141 20 0 chr13 40410915 40411014 -61462155 - AluY SINE Alu 0 311 211 1854 100 30 40 chr13 40412944 40413244 -61459925 + AluSc SINE Alu 1 297 -12 1836 182 10 55 chr13 40413318 40413719 -61459450 + MLT1B LTR MaLR 8 390 0 214 172 62 16 chr13 40414777 40414841 -61458328 + GA-rich Low_complexity Low_complexity 4 70 0 5835 11 0 0 chr13 40415610 40416266 -61456903 - L1HS LINE L1 0 6155 5500 3523 20 0 0 chr13 40416257 40416794 -61456375 + L1P1 LINE L1 4963 5499 -656 * 1928 152 7 3 chr13 40417581 40417883 -61455286 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr13 40418228 40418257 -61454912 + AT_rich Low_complexity Low_complexity 1 29 0 5053 146 24 8 chr13 40419008 40419886 -61453283 + L1PB4 LINE L1 5254 6145 -11 372 241 66 42 chr13 40419899 40420185 -61452984 + L1ME2 LINE L1 2750 3042 -3104 358 240 104 77 chr13 40420199 40420382 -61452787 + L1ME2 LINE L1 5477 5664 -500 404 241 23 6 chr13 40420408 40420582 -61452587 + GA-rich Low_complexity Low_complexity 4 180 0 1001 269 69 29 chr13 40420590 40421044 -61452125 + L1ME2 LINE L1 5668 6144 -20 1767 107 0 16 chr13 40421141 40421394 -61451775 + AluSx SINE Alu 1 249 -63 186 209 0 0 chr13 40421406 40421449 -61451720 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr13 40421449 40421485 -61451684 + AT_rich Low_complexity Low_complexity 1 36 0 227 183 0 56 chr13 40423029 40423100 -61450069 - L1MCa LINE L1 -4365 2061 1995 222 191 0 0 chr13 40423118 40423165 -61450004 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr13 40423688 40423718 -61449451 + AT_rich Low_complexity Low_complexity 1 30 0 971 139 53 10 chr13 40423718 40423927 -61449242 - L1MA7 LINE L1 -3 6288 6071 30364 116 13 55 chr13 40425933 40432354 -61440815 + L1PA7 LINE L1 12 6150 -4 22 0 0 0 chr13 40432551 40432573 -61440596 + AT_rich Low_complexity Low_complexity 1 22 0 752 172 18 29 chr13 40433236 40433421 -61439748 + L1MA8 LINE L1 5851 6044 -256 189 0 0 0 chr13 40434701 40434722 -61438447 + (A)n Simple_repeat Simple_repeat 1 21 0 1388 188 51 21 chr13 40435055 40435390 -61437779 - L1MA8 LINE L1 -4 6287 5943 22 0 0 0 chr13 40435614 40435636 -61437533 + AT_rich Low_complexity Low_complexity 1 22 0 305 304 48 8 chr13 40436961 40437086 -61436083 - L1MEc LINE L1 -4393 2003 1874 615 269 66 62 chr13 40437122 40437379 -61435790 - HERV16 LTR ERVL -3060 1936 1679 1784 204 67 12 chr13 40437846 40438248 -61434921 - MSTB LTR MaLR -2 424 1 2376 121 28 25 chr13 40438298 40438661 -61434508 + THE1B LTR MaLR 1 364 0 503 340 35 5 chr13 40438686 40438886 -61434283 + LTR16A LTR ERVL 230 435 -15 245 337 82 0 chr13 40439177 40439275 -61433894 + MIR SINE MIR 107 212 -50 198 143 0 0 chr13 40439593 40439628 -61433541 + (CA)n Simple_repeat Simple_repeat 2 36 0 905 127 28 9 chr13 40439636 40439958 -61433211 + (TAGA)n Simple_repeat Simple_repeat 3 329 0 3239 149 44 13 chr13 40440196 40440823 -61432346 + L1MC1 LINE L1 5576 6324 -9 775 230 14 37 chr13 40440866 40441083 -61432086 - MER58C DNA MER1_type 0 215 4 24 32 0 0 chr13 40441690 40441721 -61431448 + AT_rich Low_complexity Low_complexity 1 31 0 1161 224 97 3 chr13 40443051 40443413 -61429756 + L1MC3 LINE L1 7185 7580 -205 919 191 15 10 chr13 40443460 40443664 -61429505 + AluJo SINE Alu 1 205 -107 376 110 0 13 chr13 40443716 40443791 -61429378 + Alu SINE Alu 220 280 -20 180 303 42 21 chr13 40443917 40444059 -61429110 + L2 LINE L2 2244 2388 -926 191 318 28 78 chr13 40444425 40444642 -61428527 + L2 LINE L2 2883 3088 -184 708 276 6 73 chr13 40445771 40446086 -61427083 - HAL1 LINE L1 -823 1684 1391 420 282 37 9 chr13 40446099 40446315 -61426854 - HAL1 LINE L1 -1305 1202 981 369 282 43 25 chr13 40447665 40447828 -61425341 - L1M4 LINE L1 -2057 4089 3924 688 232 52 26 chr13 40448534 40448694 -61424475 - AluJo SINE Alu -29 283 116 252 86 0 0 chr13 40448694 40448729 -61424440 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 688 232 52 26 chr13 40448729 40448762 -61424407 - AluJo SINE Alu -196 116 85 1029 132 0 117 chr13 40448827 40449032 -61424137 + AluSq SINE Alu 116 296 -17 625 182 18 87 chr13 40449137 40449344 -61423825 + L1MC3 LINE L1 6801 6957 -828 2428 244 44 3 chr13 40449389 40449984 -61423185 + L1MC3 LINE L1 6962 7580 -205 922 191 15 10 chr13 40450031 40450235 -61422934 + AluJo SINE Alu 1 205 -107 403 115 0 0 chr13 40450287 40450348 -61422821 + AluS SINE Alu 220 280 -30 198 303 42 21 chr13 40450488 40450630 -61422539 + L2 LINE L2 2244 2388 -926 224 318 28 78 chr13 40450996 40451213 -61421956 + L2 LINE L2 2883 3088 -184 783 277 6 70 chr13 40452342 40452656 -61420513 - HAL1 LINE L1 -823 1684 1391 464 282 37 9 chr13 40452669 40452885 -61420284 - HAL1 LINE L1 -1305 1202 981 369 282 43 25 chr13 40454239 40454402 -61418767 - L1M4 LINE L1 -2057 4089 3924 688 232 52 26 chr13 40455108 40455268 -61417901 - AluJo SINE Alu -29 283 116 252 86 0 0 chr13 40455268 40455303 -61417866 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 688 232 52 26 chr13 40455303 40455336 -61417833 - AluJo SINE Alu -196 116 85 1029 132 0 117 chr13 40455401 40455606 -61417563 + AluSq SINE Alu 116 296 -17 625 178 15 86 chr13 40455714 40455918 -61417251 + L1MC3 LINE L1 6782 6957 -828 2428 244 44 3 chr13 40455963 40456558 -61416611 + L1MC3 LINE L1 6962 7580 -205 1141 166 22 122 chr13 40456605 40456925 -61416244 + AluJo SINE Alu 1 288 -14 783 277 6 70 chr13 40458449 40458763 -61414406 - HAL1 LINE L1 -823 1684 1391 416 292 37 9 chr13 40458776 40458992 -61414177 - HAL1 LINE L1 -1305 1202 981 369 282 43 25 chr13 40460343 40460506 -61412663 - L1M4 LINE L1 -2057 4089 3924 688 232 52 26 chr13 40461212 40461372 -61411797 - AluJo SINE Alu -29 283 116 252 86 0 0 chr13 40461372 40461407 -61411762 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 688 232 52 26 chr13 40461407 40461440 -61411729 - AluJo SINE Alu -196 116 85 1029 132 0 117 chr13 40461505 40461710 -61411459 + AluSq SINE Alu 116 296 -17 625 178 15 86 chr13 40461818 40462022 -61411147 + L1MC3 LINE L1 6782 6957 -828 2428 244 44 3 chr13 40462067 40462662 -61410507 + L1MC3 LINE L1 6962 7580 -205 969 177 10 100 chr13 40462709 40463019 -61410150 + AluJo SINE Alu 1 282 -30 198 303 42 21 chr13 40463159 40463301 -61409868 + L2 LINE L2 2244 2388 -926 321 289 69 40 chr13 40464602 40464775 -61408394 + HAL1 LINE L1 1426 1603 -904 383 274 78 6 chr13 40465495 40465674 -61407495 - L1M4 LINE L1 -2055 4091 3900 1215 214 32 25 chr13 40466376 40466540 -61406629 - AluJo SINE Alu -29 283 122 447 35 0 0 chr13 40466540 40466597 -61406572 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1829 151 21 0 chr13 40466597 40466876 -61406293 - AluSx SINE Alu -27 285 1 1215 214 32 25 chr13 40466876 40466991 -61406178 - AluJo SINE Alu -189 123 1 21 0 0 0 chr13 40467056 40467077 -61406092 + AT_rich Low_complexity Low_complexity 1 21 0 1387 220 102 16 chr13 40467130 40467512 -61405657 - L1PB4 LINE L1 -173 5983 5569 439 222 34 35 chr13 40468387 40468560 -61404609 - L1M LINE L1 -736 5426 5260 2139 128 10 0 chr13 40468659 40468965 -61404204 - AluY SINE Alu 0 311 3 1931 173 0 0 chr13 40468971 40469283 -61403886 - AluSx SINE Alu 0 312 1 5384 201 73 32 chr13 40469334 40470560 -61402609 - MER52C LTR ERV1 0 1278 2 1582 144 0 4 chr13 40470583 40470819 -61402350 - MER52C-int LTR ERV1 -2 7089 6855 10391 137 31 21 chr13 40470830 40472487 -61400682 - MER52C-int LTR ERV1 -354 6737 5064 * 16400 145 8 5 chr13 40472483 40475513 -61397656 - MER52-int LTR ERV1 -3817 3274 152 231 274 0 0 chr13 40475517 40475568 -61397601 + CT-rich Low_complexity Low_complexity 1 51 0 897 237 16 5 chr13 40475656 40475846 -61397323 - MER58A DNA MER1_type -30 194 3 366 378 88 24 chr13 40475871 40476694 -61396475 + L2 LINE L2 2149 3017 -255 1059 184 17 0 chr13 40476963 40477142 -61396027 + AluJb SINE Alu 112 293 -19 29 47 0 0 chr13 40477221 40477264 -61395905 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr13 40477918 40477959 -61395210 + AT_rich Low_complexity Low_complexity 1 41 0 396 290 151 58 chr13 40479017 40479362 -61393807 - L2 LINE L2 -3 3310 2934 202 194 32 0 chr13 40479372 40479434 -61393735 + (TTA)n Simple_repeat Simple_repeat 2 65 0 189 250 18 54 chr13 40479719 40479775 -61393394 - L2 LINE L2 -559 2755 2702 21 36 0 0 chr13 40480047 40480075 -61393094 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 40482023 40482045 -61391124 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 40482483 40482506 -61390663 + AT_rich Low_complexity Low_complexity 1 23 0 184 286 107 0 chr13 40483144 40483228 -61389941 + MIR SINE MIR 104 196 -66 537 288 135 27 chr13 40483391 40483953 -61389216 + MER20B DNA MER1_type 85 707 -76 997 271 103 58 chr13 40483961 40484408 -61388761 + MLT1C LTR MaLR 1 467 0 26 0 0 0 chr13 40484496 40484522 -61388647 + AT_rich Low_complexity Low_complexity 1 26 0 14042 190 55 12 chr13 40484566 40489518 -61383651 - L1MA3 LINE L1 -336 7388 2221 5102 193 44 18 chr13 40489539 40490530 -61382639 - L1MA3 LINE L1 -6536 1029 13 21 0 0 0 chr13 40491011 40491032 -61382137 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 40492299 40492325 -61380844 + AT_rich Low_complexity Low_complexity 1 26 0 234 255 82 125 chr13 40492339 40492378 -61380791 - MIR SINE MIR -42 220 181 686 233 59 78 chr13 40492378 40492597 -61380572 + MER20 DNA MER1_type 1 215 -4 234 255 82 125 chr13 40492597 40492741 -61380428 - MIR SINE MIR -81 181 45 876 281 51 92 chr13 40492800 40493365 -61379804 + MLT1F LTR MaLR 1 542 0 182 268 24 0 chr13 40494094 40494135 -61379034 + L2 LINE L2 3220 3261 -11 330 167 24 12 chr13 40494218 40494302 -61378867 + L1MA4 LINE L1 6036 6120 -180 * 429 208 10 30 chr13 40494299 40494400 -61378769 + L1MA4A LINE L1 6182 6280 -23 272 306 67 50 chr13 40494486 40494666 -61378503 - L2 LINE L2 -8 3305 3123 2900 3 0 0 chr13 40495932 40496240 -61376929 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 40496827 40496848 -61376321 + AT_rich Low_complexity Low_complexity 1 21 0 187 302 54 54 chr13 40497019 40497148 -61376021 - L2 LINE L2 -327 2945 2817 201 373 102 23 chr13 40497423 40497600 -61375569 - L2 LINE L2 -832 2482 2292 194 304 35 61 chr13 40498221 40498336 -61374833 + MER5B DNA MER1_type 7 118 -60 26 30 0 0 chr13 40498454 40498487 -61374682 + AT_rich Low_complexity Low_complexity 1 33 0 2233 114 3 3 chr13 40498832 40499139 -61374030 + AluSg SINE Alu 1 307 -3 245 204 20 0 chr13 40499372 40499421 -61373748 + MIR SINE MIR 95 144 -64 602 25 0 25 chr13 40499669 40499748 -61373421 - L1PA8 LINE L1 -5 6167 6091 281 212 182 0 chr13 40500361 40500427 -61372742 - L2 LINE L2 -1 3312 3235 30 0 0 0 chr13 40500536 40500566 -61372603 + AT_rich Low_complexity Low_complexity 1 30 0 275 0 0 28 chr13 40501230 40501266 -61371903 + (CA)n Simple_repeat Simple_repeat 2 36 0 307 235 71 20 chr13 40501669 40501767 -61371402 + L1MC4 LINE L1 6601 6703 -1339 543 16 0 0 chr13 40501836 40501900 -61371269 + (TC)n Simple_repeat Simple_repeat 2 65 0 207 0 0 0 chr13 40501899 40501922 -61371247 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 278 354 92 35 chr13 40502081 40502341 -61370828 + L3 LINE CR1 1203 1477 -100 2350 20 0 0 chr13 40502548 40502841 -61370328 - L1P LINE L1 -2866 3280 2988 25 31 0 0 chr13 40502949 40502981 -61370188 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 40503727 40503755 -61369414 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr13 40503804 40503852 -61369317 + AT_rich Low_complexity Low_complexity 1 48 0 1141 169 54 14 chr13 40504008 40504287 -61368882 + L1MA7 LINE L1 5639 5938 -230 1936 186 12 7 chr13 40504326 40504730 -61368439 + L1MA6 LINE L1 5894 6299 -1 1823 100 30 40 chr13 40507014 40507315 -61365854 + AluSc SINE Alu 1 298 -11 1819 187 8 52 chr13 40507389 40507790 -61365379 + MLT1B LTR MaLR 8 390 0 214 172 62 16 chr13 40508848 40508912 -61364257 + GA-rich Low_complexity Low_complexity 4 70 0 5812 11 0 0 chr13 40509680 40510336 -61362833 - L1HS LINE L1 0 6155 5500 3522 20 0 0 chr13 40510327 40510864 -61362305 + L1P1 LINE L1 4963 5499 -656 * 1918 149 7 3 chr13 40511654 40511956 -61361213 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr13 40512301 40512330 -61360839 + AT_rich Low_complexity Low_complexity 1 29 0 5094 146 23 9 chr13 40513081 40513961 -61359208 + L1PB4 LINE L1 5254 6276 -22 392 241 75 41 chr13 40513964 40514258 -61358911 + L1ME2 LINE L1 2739 3042 -3104 373 240 104 77 chr13 40514272 40514455 -61358714 + L1ME2 LINE L1 5477 5664 -500 404 241 23 6 chr13 40514481 40514655 -61358514 + GA-rich Low_complexity Low_complexity 4 180 0 1044 274 65 25 chr13 40514663 40515117 -61358052 + L1ME2 LINE L1 5668 6144 -20 1734 107 0 16 chr13 40515214 40515467 -61357702 + AluSx SINE Alu 1 249 -63 186 209 0 0 chr13 40515479 40515522 -61357647 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr13 40515522 40515558 -61357611 + AT_rich Low_complexity Low_complexity 1 36 0 232 192 0 55 chr13 40517100 40517173 -61355996 - L1MCa LINE L1 -4363 2063 1995 222 191 0 0 chr13 40517191 40517238 -61355931 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr13 40517761 40517791 -61355378 + AT_rich Low_complexity Low_complexity 1 30 0 986 139 53 10 chr13 40517791 40518000 -61355169 - L1MA7 LINE L1 -3 6288 6071 30440 117 13 54 chr13 40520005 40526416 -61346753 + L1PA7 LINE L1 12 6150 -4 22 0 0 0 chr13 40526613 40526635 -61346534 + AT_rich Low_complexity Low_complexity 1 22 0 757 172 18 29 chr13 40527298 40527483 -61345686 + L1MA8 LINE L1 5851 6044 -256 23 0 0 0 chr13 40528760 40528783 -61344386 + AT_rich Low_complexity Low_complexity 1 23 0 1412 188 51 21 chr13 40529112 40529447 -61343722 - L1MA8 LINE L1 -4 6287 5943 22 0 0 0 chr13 40529671 40529693 -61343476 + AT_rich Low_complexity Low_complexity 1 22 0 625 269 66 59 chr13 40531200 40531456 -61341713 - HERV16 LTR ERVL -3060 1936 1679 1795 201 67 12 chr13 40531923 40532325 -61340844 - MSTB LTR MaLR -2 424 1 2365 124 28 25 chr13 40532375 40532738 -61340431 + THE1B LTR MaLR 1 364 0 500 340 35 5 chr13 40532763 40532963 -61340206 + LTR16A LTR ERVL 230 435 -15 252 337 82 0 chr13 40533254 40533352 -61339817 + MIR SINE MIR 107 212 -50 198 143 0 0 chr13 40533670 40533705 -61339464 + (CA)n Simple_repeat Simple_repeat 2 36 0 887 116 28 16 chr13 40533713 40534031 -61339138 + (TAGA)n Simple_repeat Simple_repeat 3 323 0 3241 151 44 13 chr13 40534269 40534896 -61338273 + L1MC1 LINE L1 5576 6324 -9 775 230 14 37 chr13 40534939 40535156 -61338013 - MER58C DNA MER1_type 0 215 4 24 32 0 0 chr13 40535763 40535794 -61337375 + AT_rich Low_complexity Low_complexity 1 31 0 1863 170 28 35 chr13 40537725 40538124 -61335045 + L1MA6 LINE L1 5905 6300 0 250 247 52 31 chr13 40538885 40538982 -61334187 - L1ME3A LINE L1 -229 5941 5843 43 0 0 0 chr13 40538985 40539028 -61334141 + AT_rich Low_complexity Low_complexity 1 43 0 243 291 43 21 chr13 40539159 40539300 -61333869 - HAL1 LINE L1 -757 1750 1607 4715 173 8 33 chr13 40539305 40540621 -61332548 + L1PB4 LINE L1 4864 6154 -2 505 282 141 44 chr13 40540630 40541113 -61332056 - HAL1 LINE L1 -917 1590 1012 213 65 0 0 chr13 40541113 40541144 -61332025 + (TTG)n Simple_repeat Simple_repeat 2 32 0 505 282 141 44 chr13 40541144 40541383 -61331786 - HAL1 LINE L1 -1495 1012 798 22 56 0 0 chr13 40542378 40542414 -61330755 + AT_rich Low_complexity Low_complexity 1 36 0 446 322 109 17 chr13 40544320 40544559 -61328610 - MIR SINE MIR 0 262 2 455 189 0 0 chr13 40545873 40545947 -61327222 + AluS SINE Alu 1 74 -239 1370 80 0 0 chr13 40547465 40547640 -61325529 + AluSp SINE Alu 139 313 0 484 255 42 50 chr13 40598186 40598425 -61274744 - L1MC5 LINE L1 -437 7371 7249 236 337 50 0 chr13 40599005 40599106 -61274063 - L2 LINE L2 -12 3301 3196 21 0 0 0 chr13 40599419 40599440 -61273729 + AT_rich Low_complexity Low_complexity 1 21 0 288 250 193 0 chr13 40600427 40600515 -61272654 - L2 LINE L2 -8 3264 3160 797 241 49 83 chr13 40601519 40601905 -61271264 - MLT1A2 LTR MaLR 0 374 2 25 90 0 0 chr13 40602002 40602069 -61271100 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr13 40603310 40603333 -61269836 + AT_rich Low_complexity Low_complexity 1 23 0 34 84 0 0 chr13 40604586 40604669 -61268500 + AT_rich Low_complexity Low_complexity 1 83 0 225 94 0 0 chr13 40604716 40604748 -61268421 + (TATAA)n Simple_repeat Simple_repeat 1 32 0 30 45 0 0 chr13 40604994 40605038 -61268131 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr13 40605423 40605455 -61267714 + AT_rich Low_complexity Low_complexity 1 32 0 1990 117 0 4 chr13 40605524 40605825 -61267344 + AluSc SINE Alu 3 302 0 21 0 0 0 chr13 40606004 40606025 -61267144 + AT_rich Low_complexity Low_complexity 1 21 0 189 188 0 43 chr13 40606470 40606539 -61266630 + CT-rich Low_complexity Low_complexity 3 68 0 28 0 0 0 chr13 40606838 40606866 -61266303 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr13 40608009 40608044 -61265125 + AT_rich Low_complexity Low_complexity 1 35 0 1240 241 68 85 chr13 40608059 40608948 -61264221 + LTR28 LTR ERV1 1 1020 0 195 129 0 0 chr13 40609153 40609184 -61263985 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 1498 110 0 5 chr13 40609284 40609493 -61263676 + AluSg/x SINE Alu 91 298 -12 282 229 0 0 chr13 40609524 40609594 -61263575 + (CATA)n Simple_repeat Simple_repeat 3 72 0 352 338 80 44 chr13 40610028 40610253 -61262916 + L1MEd LINE L1 840 1072 -5300 431 298 129 44 chr13 40610468 40610854 -61262315 + L1MEd LINE L1 1452 1870 -4693 404 301 99 62 chr13 40611042 40611598 -61261571 + L1MEd LINE L1 2129 2709 -3673 216 0 0 0 chr13 40611605 40611629 -61261540 + (T)n Simple_repeat Simple_repeat 1 24 0 280 326 7 7 chr13 40611808 40611943 -61261226 + L1MEd LINE L1 2903 3037 -3345 252 0 0 0 chr13 40612881 40612909 -61260260 + (T)n Simple_repeat Simple_repeat 1 28 0 1447 101 25 0 chr13 40612947 40613180 -61259989 - AluSg/x SINE Alu 0 316 79 1759 149 0 11 chr13 40613496 40613765 -61259404 - AluSq SINE Alu -47 266 1 24 24 0 24 chr13 40613811 40613827 -61259342 + AT_rich Low_complexity Low_complexity 1 16 -25 5996 103 22 3 chr13 40613827 40615451 -61257718 + L1PA11 LINE L1 4522 6163 -11 24 24 0 24 chr13 40615451 40615476 -61257693 + AT_rich Low_complexity Low_complexity 16 41 0 189 171 0 0 chr13 40616112 40616147 -61257022 + (CA)n Simple_repeat Simple_repeat 2 36 0 1192 195 7 39 chr13 40616714 40617021 -61256148 + L1MA7 LINE L1 5972 6268 -23 22 0 0 0 chr13 40617319 40617341 -61255828 + AT_rich Low_complexity Low_complexity 1 22 0 196 391 70 37 chr13 40618386 40618629 -61254540 - L3 LINE CR1 -1151 426 176 493 290 0 0 chr13 40618722 40618853 -61254316 - FLAM_C SINE Alu -1 132 2 340 292 21 0 chr13 40618907 40619003 -61254166 - MIR SINE MIR -124 138 41 358 187 77 22 chr13 40619279 40619370 -61253799 - MER53 DNA DNA -93 96 1 32 67 0 0 chr13 40619463 40619523 -61253646 + AT_rich Low_complexity Low_complexity 1 60 0 311 289 31 0 chr13 40619571 40619668 -61253501 - L1MC3 LINE L1 -1116 6669 6570 30 59 0 0 chr13 40620184 40620235 -61252934 + AT_rich Low_complexity Low_complexity 1 51 0 541 276 151 53 chr13 40620295 40620883 -61252286 + HAL1 LINE L1 1532 2177 -330 22 0 0 0 chr13 40621020 40621042 -61252127 + AT_rich Low_complexity Low_complexity 1 22 0 1945 157 12 0 chr13 40621136 40621479 -61251690 - L1PB4 LINE L1 0 6156 5810 296 29 0 0 chr13 40621611 40621645 -61251524 + (TG)n Simple_repeat Simple_repeat 2 35 0 279 272 0 0 chr13 40621645 40621737 -61251432 + (TA)n Simple_repeat Simple_repeat 2 93 0 1776 219 42 7 chr13 40621755 40622127 -61251042 + L1 LINE L1 4409 4799 -1347 1864 142 0 0 chr13 40622127 40622395 -61250774 + AluSx SINE Alu 37 304 -8 1776 219 42 7 chr13 40622395 40622451 -61250718 + L1 LINE L1 4799 4852 -1294 198 0 0 0 chr13 40623870 40623892 -61249277 + (A)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr13 40624468 40624497 -61248672 + AT_rich Low_complexity Low_complexity 1 29 0 224 404 80 4 chr13 40625533 40625758 -61247411 + MIR SINE MIR 21 262 0 2808 16 0 0 chr13 40626076 40626394 -61246775 - AluYb8 SINE Alu 0 318 1 7796 19 0 0 chr13 40627074 40628084 -61245085 - L1PA3 LINE L1 0 6155 5146 939 147 68 0 chr13 40628395 40628585 -61244584 - L1MA9 LINE L1 -5 6307 6105 257 187 13 0 chr13 40628630 40628705 -61244464 + CT-rich Low_complexity Low_complexity 1 76 0 23 0 0 0 chr13 40630254 40630277 -61242892 + AT_rich Low_complexity Low_complexity 1 23 0 938 332 55 23 chr13 40630927 40631400 -61241769 - L2 LINE L2 -5 3308 2821 307 309 37 15 chr13 40631398 40631534 -61241635 - L2 LINE L2 -863 2451 2313 * 284 190 0 0 chr13 40631945 40632003 -61241166 - L1MA1 LINE L1 -104 6198 6141 230 194 16 0 chr13 40632129 40632191 -61240978 + (TA)n Simple_repeat Simple_repeat 2 64 0 3722 114 4 5 chr13 40632206 40632914 -61240255 - L1M1 LINE L1 -513 5789 5082 466 266 130 45 chr13 40633094 40633402 -61239767 - L1ME3A LINE L1 -182 5988 5655 24 0 0 0 chr13 40633829 40633853 -61239316 + AT_rich Low_complexity Low_complexity 1 24 0 35 41 0 0 chr13 40633873 40633922 -61239247 + AT_rich Low_complexity Low_complexity 1 49 0 346 88 16 83 chr13 40633922 40634115 -61239054 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 251 340 119 37 chr13 40634334 40634432 -61238737 + L2 LINE L2 2109 2198 -1116 429 36 0 0 chr13 40634432 40634487 -61238682 + (TC)n Simple_repeat Simple_repeat 2 56 0 251 340 119 37 chr13 40634487 40634632 -61238537 + L2 LINE L2 2198 2372 -942 186 377 35 26 chr13 40635489 40635603 -61237566 - L2 LINE L2 -253 3019 2905 1301 159 60 8 chr13 40635644 40635895 -61237274 + MER21A LTR ERV1 1 264 -667 2527 197 77 13 chr13 40635901 40636423 -61236746 + MER21A LTR ERV1 377 931 0 225 397 65 32 chr13 40636820 40637324 -61235845 - L2 LINE L2 -904 2410 1890 800 186 39 10 chr13 40637352 40637555 -61235614 + L1M2 LINE L1 5570 5779 -395 257 351 79 26 chr13 40637713 40637827 -61235342 + L2 LINE L2 3136 3255 -17 5090 185 35 20 chr13 40637901 40638378 -61234791 + L1MA6 LINE L1 4823 5291 -1009 411 21 0 0 chr13 40638378 40638426 -61234743 + (CAT)n Simple_repeat Simple_repeat 2 49 0 5090 185 35 20 chr13 40638426 40639410 -61233759 + L1MA6 LINE L1 5291 6295 -5 23 33 0 0 chr13 40639880 40639910 -61233259 + AT_rich Low_complexity Low_complexity 1 30 0 1388 198 41 4 chr13 40640894 40641162 -61232007 - AluJb SINE Alu -30 282 5 259 287 35 35 chr13 40641885 40641972 -61231197 - L2 LINE L2 -7 3306 3220 964 196 22 6 chr13 40642033 40642212 -61230957 + MER5A DNA MER1_type 1 182 -7 2273 207 26 91 chr13 40642636 40643375 -61229794 + LTR8 LTR ERV1 1 691 0 1886 188 21 8 chr13 40643433 40643817 -61229352 + L1PA16 LINE L1 5769 6157 -9 39 22 0 0 chr13 40643817 40643863 -61229306 + AT_rich Low_complexity Low_complexity 1 46 0 290 235 121 23 chr13 40643917 40644049 -61229120 + L1ME3A LINE L1 5398 5542 -620 1397 254 26 20 chr13 40644130 40644472 -61228697 + Tigger7 DNA MER2_type 1 344 -2143 738 159 58 14 chr13 40644467 40644605 -61228564 + Tigger7 DNA MER2_type 2339 2482 -5 * 377 317 17 0 chr13 40644610 40644730 -61228439 + L1ME3A LINE L1 5630 5751 -419 221 119 24 0 chr13 40644761 40644803 -61228366 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 2055 191 84 71 chr13 40644803 40645336 -61227833 - MLT2B3 LTR ERVL -19 515 1 1125 292 44 12 chr13 40645336 40645622 -61227547 + L1ME3A LINE L1 5748 6052 -118 3022 166 38 7 chr13 40645622 40646196 -61226973 + LTR49 LTR ERV1 1 592 -3 1125 292 44 12 chr13 40646196 40646317 -61226852 + L1ME3A LINE L1 6052 6168 -2 24 67 0 0 chr13 40646431 40646476 -61226693 + AT_rich Low_complexity Low_complexity 1 45 0 832 240 34 10 chr13 40646569 40646773 -61226396 - MER20 DNA MER1_type 0 219 11 703 322 130 28 chr13 40646865 40647325 -61225844 - L2 LINE L2 0 3313 2807 226 300 152 46 chr13 40647931 40648194 -61224975 + L2 LINE L2 2949 3239 -74 264 236 56 0 chr13 40648537 40648609 -61224560 - LTR50 LTR ERVL -8 787 712 272 250 70 10 chr13 40648738 40648838 -61224331 - LTR50 LTR ERVL -194 601 496 327 294 147 38 chr13 40648886 40649070 -61224099 - LTR50 LTR ERVL -510 285 82 345 323 16 57 chr13 40649164 40649288 -61223881 - L2 LINE L2 -2 3311 3193 247 190 0 86 chr13 40649434 40649492 -61223677 + MER20 DNA MER1_type 1 53 -166 824 272 82 0 chr13 40649496 40649702 -61223467 + MER58A DNA MER1_type 1 223 -1 198 0 0 0 chr13 40649764 40649786 -61223383 + (TATG)n Simple_repeat Simple_repeat 3 24 0 21 36 0 0 chr13 40650564 40650592 -61222577 + AT_rich Low_complexity Low_complexity 1 28 0 1580 208 34 14 chr13 40651215 40651571 -61221598 + MLT1A1 LTR MaLR 1 363 -2 332 32 65 0 chr13 40652193 40652255 -61220914 + (TA)n Simple_repeat Simple_repeat 2 67 0 299 43 0 43 chr13 40652403 40652449 -61220720 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 470 174 0 51 chr13 40652451 40652549 -61220620 + L1MC2 LINE L1 5489 5581 -763 820 194 15 35 chr13 40652558 40652759 -61220410 - L1MD2 LINE L1 0 6359 6163 4361 27 4 0 chr13 40652985 40653504 -61219665 - L1PA3 LINE L1 0 6155 5635 3538 14 0 2 chr13 40653604 40654022 -61219147 - L1P1 LINE L1 -485 5670 5254 21591 30 3 0 chr13 40654036 40656655 -61216514 + L1P LINE L1 2585 5210 -936 2975 208 80 7 chr13 40656657 40657346 -61215823 + L1MC2 LINE L1 5585 6323 -21 195 250 23 0 chr13 40657928 40657972 -61215197 - L2 LINE L2 -2 3270 3226 273 203 31 16 chr13 40657993 40658057 -61215112 + GA-rich Low_complexity Low_complexity 1 65 0 2453 114 5 39 chr13 40658698 40658747 -61214422 + L1PB2 LINE L1 5753 5802 -349 414 69 0 0 chr13 40658747 40658805 -61214364 + (CA)n Simple_repeat Simple_repeat 2 59 0 2453 114 5 39 chr13 40658805 40659166 -61214003 + L1PB2 LINE L1 5802 6149 -2 197 391 65 0 chr13 40659722 40659860 -61213309 + L2 LINE L2 3117 3263 -9 21 36 0 0 chr13 40660518 40660546 -61212623 + AT_rich Low_complexity Low_complexity 1 28 0 182 150 25 0 chr13 40661229 40661269 -61211900 + (TTA)n Simple_repeat Simple_repeat 1 41 0 215 355 0 0 chr13 40663846 40663922 -61209247 + (ATGGTG)n Simple_repeat Simple_repeat 5 80 0 22 0 0 0 chr13 40664197 40664219 -61208950 + AT_rich Low_complexity Low_complexity 1 22 0 38 0 0 0 chr13 40664278 40664316 -61208853 + AT_rich Low_complexity Low_complexity 1 38 0 523 319 119 13 chr13 40664717 40664943 -61208226 + MIR SINE MIR 8 257 -5 27 73 0 0 chr13 40665129 40665184 -61207985 + AT_rich Low_complexity Low_complexity 1 55 0 24 53 0 0 chr13 40665796 40665834 -61207335 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 40666012 40666041 -61207128 + AT_rich Low_complexity Low_complexity 1 29 0 1077 205 102 7 chr13 40666332 40666690 -61206479 - L1M2 LINE L1 -743 5403 5072 2229 172 86 15 chr13 40666692 40667169 -61206000 + L1MA7 LINE L1 5779 6289 -2 374 200 0 12 chr13 40667191 40667271 -61205898 - MIR SINE MIR -19 243 165 492 266 116 17 chr13 40667371 40667544 -61205625 - MLT1J1 LTR MaLR -120 326 137 396 196 38 89 chr13 40667812 40667970 -61205199 - L1MC3 LINE L1 0 7785 7636 213 132 0 0 chr13 40669101 40669139 -61204030 + (TC)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr13 40669351 40669380 -61203789 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 40669412 40669434 -61203735 + AT_rich Low_complexity Low_complexity 1 22 0 1410 139 0 103 chr13 40670904 40671185 -61201984 - AluJo SINE Alu -49 263 12 2476 250 64 21 chr13 40671382 40672159 -61201010 + Charlie1a DNA MER1_type 1 811 -644 322 280 19 13 chr13 40672147 40672304 -61200865 + Charlie1a DNA MER1_type 1297 1454 -1 * 509 345 67 69 chr13 40673427 40673920 -61199249 + MLT1K LTR MaLR 16 507 -81 341 241 9 0 chr13 40673923 40674035 -61199134 + (TA)n Simple_repeat Simple_repeat 2 114 0 2612 231 13 7 chr13 40675072 40675690 -61197479 - L1MB5 LINE L1 -1 6173 5552 2127 125 22 52 chr13 40675694 40676004 -61197165 + THE1B LTR MaLR 9 327 -37 2029 112 4 0 chr13 40676004 40676282 -61196887 + AluSx SINE Alu 1 279 -33 309 26 0 0 chr13 40676288 40676326 -61196843 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2127 125 22 52 chr13 40676326 40676375 -61196794 + THE1B LTR MaLR 332 364 0 6376 265 73 31 chr13 40676375 40677467 -61195702 - L1MB5 LINE L1 -633 5541 4497 183 42 0 0 chr13 40677467 40677491 -61195678 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6376 265 73 31 chr13 40677491 40679493 -61193676 - L1MB5 LINE L1 -1677 4497 2312 236 229 49 78 chr13 40679492 40679736 -61193433 + L1MEc LINE L1 2030 2266 -4130 * 225 180 74 8 chr13 40679763 40679885 -61193284 + (TA)n Simple_repeat Simple_repeat 2 131 0 778 230 36 0 chr13 40680042 40680207 -61192962 + MLT1A2 LTR MaLR 204 374 0 357 269 84 31 chr13 40680207 40680434 -61192735 + L1MEc LINE L1 3871 4109 -2106 1570 194 22 36 chr13 40680440 40680800 -61192369 + MLT2C1 LTR ERVL 3 357 -40 291 28 0 0 chr13 40680813 40680849 -61192320 + (TG)n Simple_repeat Simple_repeat 1 36 0 368 294 41 35 chr13 40680921 40681091 -61192078 + L1MEc LINE L1 4129 4299 -1916 818 189 156 4 chr13 40681133 40681376 -61191793 - MER33 DNA MER1_type -44 280 1 493 157 0 0 chr13 40682360 40682449 -61190720 - L1MA3 LINE L1 0 6305 6217 302 224 0 15 chr13 40682644 40682697 -61190472 - L1MC4 LINE L1 -1339 6703 6650 2051 110 0 50 chr13 40682697 40682998 -61190171 - AluSp SINE Alu -27 286 1 302 224 0 15 chr13 40682998 40683011 -61190158 - L1MC4 LINE L1 -1392 6650 6638 563 29 69 0 chr13 40683020 40683122 -61190047 + (TA)n Simple_repeat Simple_repeat 2 110 0 21 36 0 0 chr13 40683219 40683247 -61189922 + AT_rich Low_complexity Low_complexity 1 28 0 971 224 78 20 chr13 40684096 40684454 -61188715 - Charlie1b DNA MER1_type -3 520 142 24 0 0 0 chr13 40685147 40685171 -61187998 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr13 40685326 40685361 -61187808 + AT_rich Low_complexity Low_complexity 1 35 0 1244 201 188 20 chr13 40687359 40687703 -61185466 - MSTC LTR MaLR 0 365 1 23 0 0 0 chr13 40689185 40689208 -61183961 + AT_rich Low_complexity Low_complexity 1 23 0 205 344 51 56 chr13 40689726 40689921 -61183248 + L2 LINE L2 2607 2800 -514 182 159 175 63 chr13 40690260 40690323 -61182846 + L2 LINE L2 466 535 -2779 2334 32 0 7 chr13 40690456 40690773 -61182396 + AluY SINE Alu 1 315 0 21 0 0 0 chr13 40690773 40690794 -61182375 + AT_rich Low_complexity Low_complexity 1 21 0 545 330 62 17 chr13 40690802 40691090 -61182079 + L2 LINE L2 714 1014 -2300 494 302 73 101 chr13 40691123 40691619 -61181550 + L2 LINE L2 2832 3313 0 2501 318 74 48 chr13 40691769 40693211 -61179958 + L2 LINE L2 1208 2686 -628 2200 266 64 26 chr13 40693229 40693786 -61179383 - L1ME2 LINE L1 -19 6214 5611 772 69 0 0 chr13 40693786 40693887 -61179282 - L1PA8 LINE L1 -2 6170 6070 2200 266 64 26 chr13 40693887 40694167 -61179002 - L1ME2 LINE L1 -622 5611 5343 279 247 25 0 chr13 40694191 40694272 -61178897 - L1ME2 LINE L1 -1049 5166 5084 1097 288 95 37 chr13 40694428 40694523 -61178646 - L1ME2 LINE L1 -1198 5017 4929 1317 249 42 42 chr13 40694523 40695028 -61178141 - MLT1D LTR MaLR 0 505 1 1097 288 95 37 chr13 40695028 40695657 -61177512 - L1ME2 LINE L1 -1286 4929 4251 * 4571 195 39 36 chr13 40695653 40696958 -61176211 - L1MA10 LINE L1 0 6334 5023 879 214 6 0 chr13 40697009 40697187 -61175982 + L1 LINE L1 4832 5010 -1136 735 308 37 48 chr13 40697299 40697727 -61175442 - L1ME2 LINE L1 -4488 1793 1402 2288 116 3 0 chr13 40697727 40698038 -61175131 - AluSx SINE Alu 0 312 1 735 308 37 48 chr13 40698038 40698167 -61175002 - L1ME2 LINE L1 -4879 1402 1273 2857 3 0 0 chr13 40698840 40699179 -61173990 - AluYa5 SINE Alu 0 339 1 2051 152 0 0 chr13 40699682 40699979 -61173190 + AluSx SINE Alu 1 297 -15 21 36 0 0 chr13 40700644 40700672 -61172497 + AT_rich Low_complexity Low_complexity 1 28 0 572 230 0 24 chr13 40701118 40701244 -61171925 + FLAM_A SINE Alu 1 123 -10 279 0 0 0 chr13 40702384 40702415 -61170754 + (TG)n Simple_repeat Simple_repeat 2 32 0 604 129 7 114 chr13 40702745 40702885 -61170284 + LTR7 LTR ERV1 1 125 -325 872 193 64 20 chr13 40703062 40703264 -61169905 + LTR7 LTR ERV1 238 448 -2 2459 59 0 13 chr13 40703928 40704231 -61168938 - AluY SINE Alu -12 299 1 22 0 0 0 chr13 40704356 40704378 -61168791 + AT_rich Low_complexity Low_complexity 1 22 0 1748 194 53 31 chr13 40704789 40705332 -61167837 + MLT2A2 LTR ERVL 1 554 0 11985 184 49 18 chr13 40706510 40708501 -61164668 + L1M1 LINE L1 14 2832 -4733 5814 19 0 0 chr13 40708501 40709168 -61164001 + L1PA3 LINE L1 5489 6155 0 11985 184 49 18 chr13 40709168 40710214 -61162955 + L1M1 LINE L1 2832 3843 -3722 7935 183 17 7 chr13 40710210 40712202 -61160967 + L1M1 LINE L1 5091 7105 -616 * 253 157 0 0 chr13 40712196 40712247 -61160922 + L1MA3 LINE L1 6249 6299 -6 * 860 273 38 64 chr13 40714526 40715025 -61158144 - HAL1 LINE L1 -757 1750 1265 31 0 0 0 chr13 40715056 40715087 -61158082 + AT_rich Low_complexity Low_complexity 1 31 0 300 307 90 69 chr13 40715290 40715622 -61157547 - HAL1 LINE L1 -1640 867 529 248 259 52 111 chr13 40715852 40716122 -61157047 - HAL1 LINE L1 -2154 353 100 1953 128 7 0 chr13 40716638 40716964 -61156205 - AluSq SINE Alu 0 328 1 255 339 37 0 chr13 40717055 40717164 -61156005 + L2 LINE L2 2595 2707 -607 768 280 18 0 chr13 40717264 40717432 -61155737 + MER45A DNA AcHobo 8 178 0 337 295 11 0 chr13 40717436 40717531 -61155638 + MIR SINE MIR 161 256 -6 206 174 0 22 chr13 40717538 40717584 -61155585 + (TTA)n Simple_repeat Simple_repeat 1 45 0 522 319 37 11 chr13 40718729 40718921 -61154248 + MIR SINE MIR 34 228 -34 29 84 0 0 chr13 40719526 40719597 -61153572 + AT_rich Low_complexity Low_complexity 1 71 0 1013 82 0 15 chr13 40719865 40720000 -61153169 + AluY SINE Alu 1 133 -178 2268 66 0 7 chr13 40720818 40721107 -61152062 - AluY SINE Alu -11 300 14 597 200 0 0 chr13 40721912 40722022 -61151147 - FLAM_A SINE Alu -9 133 24 2501 51 0 0 chr13 40722250 40722545 -61150624 + AluY SINE Alu 1 295 -16 957 223 33 0 chr13 40722744 40722928 -61150241 + L1PA16 LINE L1 13 202 -6647 * 12388 217 30 13 chr13 40722926 40725310 -61147859 + L1PA16 LINE L1 958 3298 -3579 7129 153 17 1 chr13 40725310 40727294 -61145875 + L1PA10 LINE L1 4150 6156 -12 12388 217 30 13 chr13 40727294 40730759 -61142410 + L1PA16 LINE L1 3298 6877 0 1348 176 33 9 chr13 40730966 40731301 -61141868 + Tigger4(Zombi) DNA MER2_type 1 2729 -2 1508 201 0 33 chr13 40731437 40731741 -61141428 + AluJb SINE Alu 1 294 -18 1191 123 10 15 chr13 40731920 40732124 -61141045 - L1PB2 LINE L1 0 6151 5949 4105 201 6 3 chr13 40732124 40732992 -61140177 - L1 LINE L1 -3167 2979 2110 6629 142 32 11 chr13 40732997 40734227 -61138942 - L1PBa LINE L1 -4094 2769 1513 3207 101 30 4 chr13 40734232 40734707 -61138462 - LTR15 LTR ERV1 -6 487 1 899 225 106 19 chr13 40734707 40735873 -61137296 - L1PBa LINE L1 -5346 1517 105 28 29 0 0 chr13 40736038 40736073 -61137096 + AT_rich Low_complexity Low_complexity 1 35 0 1603 132 8 4 chr13 40737169 40737411 -61135758 + AluSq SINE Alu 41 283 -30 360 59 0 0 chr13 40737414 40737465 -61135704 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3282 89 13 0 chr13 40737590 40738037 -61135132 + MLT2A2 LTR ERVL 1 453 0 315 329 103 14 chr13 40738372 40738518 -61134651 - MIR SINE MIR -29 233 75 1919 126 149 25 chr13 40738636 40738992 -61134177 - Tigger2 DNA MER2_type -38 2680 2281 358 200 0 0 chr13 40738996 40739061 -61134108 + MER8 DNA MER2_type 175 239 0 * 565 250 125 18 chr13 40739061 40739284 -61133885 + MER2 DNA MER2_type 97 343 -2 761 198 94 68 chr13 40739390 40739698 -61133471 + MER33 DNA MER1_type 5 320 -4 2243 104 0 3 chr13 40739952 40740259 -61132910 - AluSc SINE Alu -3 306 1 21 0 0 0 chr13 40740501 40740522 -61132647 + AT_rich Low_complexity Low_complexity 1 21 0 403 218 102 80 chr13 40741689 40741914 -61131255 - L1MC5 LINE L1 -424 7537 7308 344 294 0 0 chr13 40742354 40742446 -61130723 - L2 LINE L2 -6 3307 3216 661 49 0 39 chr13 40742580 40742682 -61130487 - AluY SINE Alu 0 311 214 22 35 0 0 chr13 40742850 40742879 -61130290 + AT_rich Low_complexity Low_complexity 1 29 0 26 98 0 0 chr13 40743367 40743449 -61129720 + AT_rich Low_complexity Low_complexity 1 82 0 215 179 0 0 chr13 40746372 40746411 -61126758 + L2 LINE L2 3272 3310 -3 500 85 12 37 chr13 40746892 40746974 -61126195 + MADE1 DNA Mariner 1 80 0 290 213 12 25 chr13 40746979 40747059 -61126110 - LTR67 LTR ERVL -6 551 473 24 32 0 0 chr13 40748306 40748337 -61124832 + AT_rich Low_complexity Low_complexity 1 31 0 1784 163 14 94 chr13 40748348 40748772 -61124397 - MLT1B LTR MaLR 0 390 1 219 273 0 18 chr13 40748815 40748870 -61124299 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 268 183 141 0 chr13 40750109 40750180 -61122989 + L1ME4a LINE L1 6012 6092 -29 624 128 49 0 chr13 40750209 40750311 -61122858 - THE1C LTR MaLR -19 356 250 2076 114 7 17 chr13 40751864 40752163 -61121006 + AluSg SINE Alu 1 296 -14 180 0 0 0 chr13 40752266 40752286 -61120883 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1777 309 120 46 chr13 40753508 40753674 -61119495 - L2 LINE L2 0 3313 3161 204 111 0 0 chr13 40753674 40753710 -61119459 + (TG)n Simple_repeat Simple_repeat 1 36 0 1777 309 120 46 chr13 40753710 40754768 -61118401 - L2 LINE L2 -152 3161 2042 183 122 54 27 chr13 40754789 40754863 -61118306 + (TTATA)n Simple_repeat Simple_repeat 1 76 0 24 67 0 0 chr13 40754870 40754915 -61118254 + AT_rich Low_complexity Low_complexity 1 45 0 453 288 137 66 chr13 40755891 40756301 -61116868 + MLT1K LTR MaLR 36 474 -114 7261 40 0 1 chr13 40756365 40757823 -61115346 - L1PA5 LINE L1 0 6154 4699 265 325 98 24 chr13 40758400 40758523 -61114646 + L3 LINE CR1 1285 1416 -161 333 274 32 11 chr13 40758731 40758826 -61114343 - MIR SINE MIR -109 153 57 29 47 0 0 chr13 40759022 40759065 -61114104 + AT_rich Low_complexity Low_complexity 1 43 0 431 256 196 20 chr13 40759533 40759732 -61113437 + MIR SINE MIR 8 241 -21 296 300 175 0 chr13 40762523 40762683 -61110486 - MIR SINE MIR -44 218 31 2394 218 55 15 chr13 40763459 40764059 -61109110 + MLT1E3 LTR MaLR 1 624 0 28 0 0 0 chr13 40764202 40764230 -61108939 + AT_rich Low_complexity Low_complexity 1 28 0 1814 188 27 3 chr13 40764776 40765112 -61108057 + MER2 DNA MER2_type 1 344 0 288 0 0 0 chr13 40765119 40765151 -61108018 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 128 6 0 chr13 40765225 40765280 -61107889 + AluY SINE Alu 1 40 -262 1575 97 0 0 chr13 40765282 40765488 -61107681 + AluY SINE Alu 92 297 -14 1727 161 73 14 chr13 40765658 40766012 -61107157 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr13 40766107 40766138 -61107031 + AT_rich Low_complexity Low_complexity 1 31 0 953 245 10 10 chr13 40766456 40766664 -61106505 + MER45C DNA AcHobo 1 208 -745 480 284 130 50 chr13 40766679 40766918 -61106251 + MER45C DNA AcHobo 695 952 -1 212 309 36 36 chr13 40767480 40767564 -61105605 - MIR3 SINE MIR -37 171 88 226 282 35 35 chr13 40768276 40768361 -61104808 - L2 LINE L2 -4 3309 3225 387 307 33 40 chr13 40768925 40769075 -61104094 + MIR SINE MIR 20 168 -94 344 239 128 26 chr13 40769422 40769539 -61103630 - MIR3 SINE MIR -76 132 4 1666 194 137 3 chr13 40769736 40770117 -61103052 - MSTB1 LTR MaLR 0 432 1 422 275 56 31 chr13 40770217 40770377 -61102792 + MLT1L LTR MaLR 153 316 -299 252 59 0 0 chr13 40770741 40770775 -61102394 + (TA)n Simple_repeat Simple_repeat 1 34 0 220 225 141 14 chr13 40770911 40770982 -61102187 + L2 LINE L2 2664 2743 -571 386 255 20 60 chr13 40771012 40771161 -61102008 - MER5B DNA MER1_type 0 178 36 256 269 67 58 chr13 40771169 40771273 -61101896 - MER5B DNA MER1_type -68 110 6 250 315 0 0 chr13 40771515 40771588 -61101581 - MLT1J LTR MaLR -324 187 115 602 284 47 58 chr13 40771991 40772248 -61100921 + MIR SINE MIR 3 256 -6 845 328 37 32 chr13 40773451 40773853 -61099316 + L1M3d LINE L1 1 404 -5487 287 360 20 39 chr13 40773939 40774092 -61099077 + L1M3d LINE L1 523 672 -5219 28 0 0 0 chr13 40774186 40774214 -61098955 + AT_rich Low_complexity Low_complexity 1 28 0 639 272 179 41 chr13 40774230 40774367 -61098802 + L1M3d LINE L1 664 781 -5120 553 235 43 0 chr13 40774367 40774482 -61098687 - FLAM_A SINE Alu -12 121 2 639 272 179 41 chr13 40774482 40774902 -61098267 + L1M3d LINE L1 781 1298 -4603 * 12446 83 4 1 chr13 40774897 40777379 -61095790 + L1PA7 LINE L1 3640 6124 -30 918 237 48 71 chr13 40777389 40777781 -61095388 + L1MB1 LINE L1 1493 1875 -4509 728 261 85 24 chr13 40778147 40778696 -61094473 + L1MB1 LINE L1 1979 2562 -3820 12632 41 0 19 chr13 40778696 40780573 -61092596 - L1PA5 LINE L1 -486 5668 3827 4005 44 2 0 chr13 40780573 40781065 -61092104 + L1PA5 LINE L1 5648 6143 -11 25 31 0 0 chr13 40781079 40781111 -61092058 + AT_rich Low_complexity Low_complexity 1 32 0 2194 259 66 16 chr13 40781124 40781941 -61091228 + L1MB1 LINE L1 2551 3408 -2974 * 6309 201 20 14 chr13 40781933 40783368 -61089801 + L1MB1 LINE L1 3800 5243 -1139 2560 14 0 0 chr13 40783358 40783648 -61089521 + L1HS LINE L1 5855 6144 -11 * 244 229 0 0 chr13 40783659 40783720 -61089449 + A-rich Low_complexity Low_complexity 1 61 0 3034 206 39 51 chr13 40783720 40784904 -61088265 + L1MB1 LINE L1 5228 6395 -9 593 279 115 32 chr13 40784989 40785301 -61087868 + L1 LINE L1 2110 2447 -3699 * 613 119 19 132 chr13 40785300 40785459 -61087710 + L1MB1 LINE L1 6028 6168 0 201 266 43 0 chr13 40785863 40785957 -61087212 + (AATAG)n Simple_repeat Simple_repeat 3 100 0 278 276 0 0 chr13 40786389 40786465 -61086704 + MER69 DNA AcHobo 2442 2517 -9 392 258 65 0 chr13 40787222 40787377 -61085792 + MER112 DNA MER1_type 90 254 -6 707 224 7 0 chr13 40787622 40787765 -61085404 - MER58A DNA MER1_type -35 189 46 295 283 76 43 chr13 40787801 40787985 -61085184 + L2 LINE L2 3113 3302 -11 486 306 35 0 chr13 40787985 40788155 -61085014 - MER110 LTR ERV1 0 491 316 333 0 0 0 chr13 40788174 40788211 -61084958 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 2222 201 66 4 chr13 40788211 40788743 -61084426 - L1MD2 LINE L1 -16 6343 5780 274 243 29 14 chr13 40788991 40789061 -61084108 + L2 LINE L2 3243 3313 0 26 30 0 0 chr13 40789075 40789108 -61084061 + AT_rich Low_complexity Low_complexity 1 33 0 180 387 42 17 chr13 40789208 40789327 -61083842 + MIR3 SINE MIR 86 207 -1 374 183 0 0 chr13 40789371 40789442 -61083727 - L1MD3 LINE L1 -3 7992 7922 1743 224 75 5 chr13 40789470 40789899 -61083270 - L1MD2 LINE L1 -517 5842 5384 392 250 17 42 chr13 40789899 40790019 -61083150 - MER110 LTR ERV1 -186 305 189 1463 102 0 5 chr13 40790019 40790234 -61082935 + L1PA7 LINE L1 5780 5993 -161 7255 40 1 0 chr13 40790277 40791802 -61081367 + L1PA5 LINE L1 4634 6160 0 325 304 27 0 chr13 40791806 40791918 -61081251 - MER110 LTR ERV1 -318 173 59 2151 65 0 4 chr13 40792118 40792393 -61080776 + AluY SINE Alu 3 276 -35 206 293 0 0 chr13 40792621 40792679 -61080490 + MIR SINE MIR 41 98 -164 2142 158 6 0 chr13 40792714 40793069 -61080100 - L1P LINE L1 -1838 4308 3952 25 0 0 0 chr13 40793069 40793094 -61080075 + AT_rich Low_complexity Low_complexity 1 25 0 338 278 196 0 chr13 40793173 40793306 -61079863 + L1ME LINE L1 5526 5684 -437 2253 87 7 10 chr13 40793332 40793631 -61079538 - AluSx SINE Alu -14 298 1 285 257 100 0 chr13 40793646 40793716 -61079453 + L2 LINE L2 3197 3273 -40 731 139 16 8 chr13 40793729 40793851 -61079318 + L1P4 LINE L1 5578 5700 -468 990 107 13 0 chr13 40793853 40794002 -61079167 + L1P4 LINE L1 5668 5818 -350 23 0 0 0 chr13 40794731 40794754 -61078415 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr13 40794954 40794983 -61078186 + AT_rich Low_complexity Low_complexity 1 29 0 558 0 0 0 chr13 40795165 40795227 -61077942 + (CA)n Simple_repeat Simple_repeat 1 62 0 242 216 14 0 chr13 40795848 40795922 -61077247 + CT-rich Low_complexity Low_complexity 3 77 0 1542 236 25 63 chr13 40797153 40797558 -61075611 + MLT1D LTR MaLR 1 383 -122 1555 228 22 6 chr13 40797558 40797914 -61075255 - MLT1A1 LTR MaLR -2 363 2 1542 236 25 63 chr13 40797914 40798030 -61075139 + MLT1D LTR MaLR 383 502 -3 428 332 101 33 chr13 40798295 40798690 -61074479 - L1M4 LINE L1 -1704 4442 4021 532 272 91 59 chr13 40799036 40799543 -61073626 - HAL1b LINE L1 -607 741 219 31 0 0 0 chr13 40800403 40800434 -61072735 + AT_rich Low_complexity Low_complexity 1 31 0 34 65 0 0 chr13 40800701 40800763 -61072406 + AT_rich Low_complexity Low_complexity 1 62 0 2421 94 13 24 chr13 40800823 40801196 -61071973 - L1PB1 LINE L1 -1 6150 5782 3719 110 10 12 chr13 40801243 40801264 -61071905 - L1PB1 LINE L1 -356 5795 5775 488 48 48 0 chr13 40801264 40801348 -61071821 + (TA)n Simple_repeat Simple_repeat 2 89 0 3719 110 10 12 chr13 40801348 40802008 -61071161 - L1PB1 LINE L1 -376 5775 5116 52 69 0 0 chr13 40802555 40802656 -61070513 + AT_rich Low_complexity Low_complexity 1 101 0 487 311 45 11 chr13 40803307 40803619 -61069550 - LTR16A LTR ERVL -38 412 65 956 252 92 31 chr13 40804178 40804680 -61068489 - MER76 LTR ERV -39 649 1 1151 335 69 49 chr13 40804725 40804806 -61068363 - MERVL LTR ERVL -597 4888 4810 1806 185 3 57 chr13 40804806 40805174 -61067995 + MER7A DNA MER2_type 1 346 0 1151 335 69 49 chr13 40805174 40806753 -61066416 - MERVL LTR ERVL -675 4810 3195 1185 316 45 68 chr13 40806831 40807639 -61065530 - MERVL LTR ERVL -2079 2917 2129 252 273 13 26 chr13 40807772 40807849 -61065320 - MERVL LTR ERVL -3696 1958 1883 2037 156 58 14 chr13 40808511 40808928 -61064241 - L1MA9 LINE L1 0 6312 5878 898 291 81 31 chr13 40809231 40809554 -61063615 + LTR40a LTR ERVL 4 342 -177 289 239 15 0 chr13 40809555 40809622 -61063547 - MLT1E LTR MaLR -7 647 580 766 303 32 104 chr13 40809632 40809805 -61063364 - MLT1E LTR MaLR -182 411 227 468 51 0 0 chr13 40809805 40809864 -61063305 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 766 303 32 104 chr13 40809864 40810133 -61063036 - MLT1E LTR MaLR -366 227 1 973 167 17 6 chr13 40810138 40810312 -61062857 + LTR40a LTR ERVL 344 519 0 23 0 0 0 chr13 40811495 40811518 -61061651 + AT_rich Low_complexity Low_complexity 1 23 0 214 175 0 48 chr13 40811820 40811883 -61061286 + GA-rich Low_complexity Low_complexity 4 63 0 765 254 6 12 chr13 40811893 40812066 -61061103 + MER63A DNA MER1_type 39 210 0 2668 174 80 28 chr13 40812718 40813333 -61059836 - L1MA4 LINE L1 -8 6292 5646 309 291 179 0 chr13 40814213 40814330 -61058839 + MIR3 SINE MIR 67 204 -4 410 258 0 0 chr13 40814539 40814632 -61058537 + MLT1J1 LTR MaLR 11 103 -343 21 0 0 0 chr13 40815110 40815131 -61058038 + AT_rich Low_complexity Low_complexity 1 21 0 223 180 0 49 chr13 40815542 40815588 -61057581 + GA-rich Low_complexity Low_complexity 4 48 -13 1839 139 0 78 chr13 40815588 40815919 -61057250 + AluSx SINE Alu 1 305 -7 223 180 0 49 chr13 40815919 40815933 -61057236 + GA-rich Low_complexity Low_complexity 48 61 0 190 56 56 0 chr13 40816197 40816233 -61056936 + (TA)n Simple_repeat Simple_repeat 1 38 0 1000 344 46 11 chr13 40816273 40816706 -61056463 + L1M4b LINE L1 33 480 -6379 391 160 0 160 chr13 40816713 40816832 -61056337 + L1M4b LINE L1 1260 1359 -5500 1292 230 34 11 chr13 40816854 40817249 -61055920 + L1M4b LINE L1 1314 1712 -5143 1541 245 34 21 chr13 40817254 40817634 -61055535 - MER70A LTR ERVL 0 472 88 887 147 0 73 chr13 40817624 40817801 -61055368 - MER70B LTR ERVL -414 164 1 * 1143 265 53 20 chr13 40817801 40818447 -61054722 + L1M4b LINE L1 1707 2717 -4241 2946 271 54 38 chr13 40818636 40820459 -61052710 + L1M4 LINE L1 1731 3544 -2671 397 185 93 63 chr13 40820452 40820657 -61052512 + L1M4 LINE L1 3931 4141 -2074 * 382 271 16 8 chr13 40820658 40820787 -61052382 + L1M4 LINE L1 4272 4401 -1814 676 210 44 34 chr13 40820837 40821042 -61052127 + L1MA7 LINE L1 6083 6289 -2 2351 241 42 34 chr13 40821048 40822428 -61050741 + L1M4 LINE L1 4381 5770 -483 1471 272 44 48 chr13 40822463 40822963 -61050206 + MER21B LTR ERV1 22 519 -344 464 329 47 57 chr13 40823294 40823605 -61049564 + MLT1H LTR MaLR 127 434 -115 1731 199 75 94 chr13 40823605 40823682 -61049487 + MER67C LTR ERV1 1 78 -632 2141 117 0 22 chr13 40823682 40823998 -61049171 + AluSx SINE Alu 1 309 -3 1731 199 75 94 chr13 40823998 40824642 -61048527 + MER67C LTR ERV1 78 708 -2 464 329 47 57 chr13 40824642 40824755 -61048414 + MLT1H LTR MaLR 434 547 -2 1704 199 42 154 chr13 40824760 40825565 -61047604 - LTR8A LTR ERV1 0 727 1 10263 199 89 82 chr13 40825603 40830457 -61042712 - HUERS-P1 LTR ERV1 -33 6230 768 2897 191 32 114 chr13 40830454 40831330 -61041839 - HUERS-P1 LTR ERV1 -4461 1485 361 * 211 161 18 18 chr13 40831389 40831445 -61041724 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 393 317 24 37 chr13 40831724 40831888 -61041281 - HUERS-P1 LTR ERV1 -6101 162 1 1911 196 42 154 chr13 40831888 40832669 -61040500 - LTR8A LTR ERV1 0 727 34 348 264 7 42 chr13 40832697 40832841 -61040328 - L1MC5 LINE L1 -38 7923 7785 1389 192 0 12 chr13 40833011 40833261 -61039908 - AluSx SINE Alu -15 297 51 3644 147 43 8 chr13 40833826 40834457 -61038712 - MER39B LTR ERV1 0 653 1 288 241 0 0 chr13 40834632 40834711 -61038458 + (CA)n Simple_repeat Simple_repeat 2 80 0 1132 264 188 41 chr13 40836475 40837013 -61036156 - MLT1E2 LTR MaLR -9 617 1 257 363 81 0 chr13 40837383 40837507 -61035662 + MER5A DNA MER1_type 56 189 0 2418 166 60 20 chr13 40837566 40838113 -61035056 + L1MA8 LINE L1 3997 4565 -1581 1339 269 52 11 chr13 40838113 40838481 -61034688 + MSTD LTR MaLR 1 383 -13 5104 164 42 14 chr13 40838483 40840134 -61033035 + L1MA8 LINE L1 4572 6271 -20 42 48 0 0 chr13 40840134 40840197 -61032972 + AT_rich Low_complexity Low_complexity 1 63 0 592 261 18 78 chr13 40842384 40842684 -61030485 + LTR16A1 LTR ERVL 189 457 0 228 302 189 9 chr13 40843032 40843138 -61030031 - L2 LINE L2 -199 3073 2949 1424 111 5 0 chr13 40843185 40843400 -61029769 - AluSg/x SINE Alu 0 309 94 22 35 0 0 chr13 40844093 40844122 -61029047 + AT_rich Low_complexity Low_complexity 1 29 0 506 111 0 0 chr13 40845509 40845581 -61027588 - MSTA LTR MaLR 0 428 357 570 101 0 0 chr13 40845581 40845660 -61027509 + AluY SINE Alu 18 96 -215 254 326 65 7 chr13 40846239 40846377 -61026792 - MIR SINE MIR -30 232 87 2677 160 25 28 chr13 40846533 40847036 -61026133 - L1MA4 LINE L1 -14 6286 5784 1960 157 0 6 chr13 40847036 40847349 -61025820 - AluSx SINE Alu -1 311 1 2677 160 25 28 chr13 40847349 40847375 -61025794 - L1MA4 LINE L1 -516 5784 5759 21 0 0 0 chr13 40847973 40847994 -61025175 + AT_rich Low_complexity Low_complexity 1 21 0 362 344 16 0 chr13 40848494 40848622 -61024547 - L2 LINE L2 -4 3309 3180 770 280 61 51 chr13 40848653 40849046 -61024123 - MLT1I LTR MaLR -8 401 5 1087 235 24 4 chr13 40849107 40849362 -61023807 + AluJo SINE Alu 1 260 -52 783 104 17 9 chr13 40849426 40849541 -61023628 + MLT1E LTR MaLR 20 135 -458 718 232 107 6 chr13 40849543 40849711 -61023458 - MLT1A2 LTR MaLR 0 374 190 599 306 5 21 chr13 40849793 40849979 -61023190 - MLT1A2 LTR MaLR -191 183 1 * 1571 242 96 16 chr13 40849979 40850411 -61022758 + MLT1E LTR MaLR 127 593 0 1187 289 60 31 chr13 40850499 40850917 -61022252 + MER70B LTR ERVL 1 430 -148 25 0 0 0 chr13 40851203 40851228 -61021941 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 40851298 40851326 -61021843 + AT_rich Low_complexity Low_complexity 1 28 0 418 222 87 16 chr13 40851486 40851612 -61021557 - MLT1H LTR MaLR -4 545 411 365 239 0 0 chr13 40851684 40851755 -61021414 - AluJ/FLAM SINE Alu -223 79 9 1324 186 3 3 chr13 40851856 40852151 -61021018 - L1MA4 LINE L1 -3 6297 6003 210 37 0 0 chr13 40852572 40852599 -61020570 + (TTAG)n Simple_repeat Simple_repeat 2 28 0 2159 69 28 10 chr13 40852599 40852878 -61020291 - AluY SINE Alu -24 287 1 198 367 0 0 chr13 40852913 40852992 -61020177 - MIR SINE MIR -74 188 110 435 261 85 0 chr13 40853099 40853229 -61019940 + MLT1I LTR MaLR 81 221 -188 360 293 30 42 chr13 40853293 40853460 -61019709 + MLT1I LTR MaLR 245 409 0 235 315 41 0 chr13 40853460 40853533 -61019636 - MIR SINE MIR -185 77 2 2053 102 7 16 chr13 40853559 40853862 -61019307 - AluSx SINE Alu -12 300 1 181 243 0 0 chr13 40854389 40854426 -61018743 - MIR SINE MIR -6 256 220 228 250 0 0 chr13 40856025 40856041 -61017128 + MER3 DNA MER1_type 33 48 -161 238 232 0 0 chr13 40856041 40856097 -61017072 - MER3 DNA MER1_type -1 208 153 195 100 0 0 chr13 40856592 40856622 -61016547 + (CA)n Simple_repeat Simple_repeat 1 30 0 1571 189 43 0 chr13 40856623 40856945 -61016224 + MER44D DNA MER2_type 4 609 0 221 209 60 0 chr13 40856945 40857012 -61016157 + (TA)n Simple_repeat Simple_repeat 2 72 0 1075 346 22 7 chr13 40857541 40857954 -61015215 + LTR16A LTR ERVL 25 443 -7 475 308 23 6 chr13 40858008 40858180 -61014989 + MIR SINE MIR 75 249 -13 29 60 0 0 chr13 40859171 40859221 -61013948 + AT_rich Low_complexity Low_complexity 1 50 0 218 234 21 0 chr13 40860166 40860213 -61012956 + MIR SINE MIR 96 143 -119 237 65 0 0 chr13 40860389 40860420 -61012749 + (T)n Simple_repeat Simple_repeat 1 31 0 288 0 0 0 chr13 40860420 40860452 -61012717 + (TG)n Simple_repeat Simple_repeat 1 32 0 2147 160 2 90 chr13 40860452 40860896 -61012273 - LTR8 LTR ERV1 -106 585 181 219 331 24 48 chr13 40860915 40861039 -61012130 + MIR SINE MIR 142 262 0 249 33 0 0 chr13 40862207 40862237 -61010932 + (TC)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr13 40862236 40862262 -61010907 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1955 184 54 7 chr13 40862265 40862672 -61010497 + MSTB LTR MaLR 1 426 0 390 301 201 9 chr13 40864171 40864400 -61008769 - L2 LINE L2 -165 3148 2876 1344 201 27 133 chr13 40864515 40864738 -61008431 + MSTD LTR MaLR 1 155 -241 3012 154 71 4 chr13 40864738 40865276 -61007893 + L1PA16 LINE L1 5591 6164 -2 1344 201 27 133 chr13 40865276 40865495 -61007674 + MSTD LTR MaLR 155 396 0 187 409 17 9 chr13 40866432 40866547 -61006622 - L2 LINE L2 -332 2940 2825 22 0 0 0 chr13 40866774 40866796 -61006373 + AT_rich Low_complexity Low_complexity 1 22 0 13419 228 31 21 chr13 40867019 40869309 -61003860 - L1PA16 LINE L1 -9 7595 5329 1420 221 10 17 chr13 40869309 40869607 -61003562 - AluJb SINE Alu -16 296 1 13419 228 31 21 chr13 40869607 40872485 -61000684 - L1PA16 LINE L1 -2275 5329 2354 15511 176 38 12 chr13 40872493 40872809 -61000360 - L1PB2 LINE L1 -37 6830 6524 414 39 0 0 chr13 40872809 40872861 -61000308 + (TG)n Simple_repeat Simple_repeat 2 53 0 15511 176 38 12 chr13 40872861 40873288 -60999881 - L1PB2 LINE L1 -343 6524 6110 1534 214 7 0 chr13 40873288 40873605 -60999564 - AluSx SINE Alu 0 319 1 15511 176 38 12 chr13 40873605 40879490 -60993679 - L1PB2 LINE L1 -757 6110 1 316 214 29 64 chr13 40879509 40879649 -60993520 - L1PA16 LINE L1 -5217 2364 2230 253 316 32 0 chr13 40879907 40880002 -60993167 - L1PA16 LINE L1 -5399 2182 2085 621 342 18 44 chr13 40880291 40880741 -60992428 - L1PA16 LINE L1 -6349 1225 788 21 36 0 0 chr13 40880948 40880976 -60992193 + AT_rich Low_complexity Low_complexity 1 28 0 300 27 0 0 chr13 40881626 40881663 -60991506 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr13 40881662 40881698 -60991471 + (CA)n Simple_repeat Simple_repeat 1 36 0 196 347 195 20 chr13 40882908 40883461 -60989708 + L2 LINE L2 1788 2437 -877 954 172 75 0 chr13 40883502 40883688 -60989481 + L1PA16 LINE L1 5964 6163 -3 2682 167 6 62 chr13 40883757 40884164 -60989005 + LTR44 LTR ERV1 1 371 -148 5029 52 2 0 chr13 40884164 40884794 -60988375 + L1PA5 LINE L1 5524 6154 0 2682 167 6 62 chr13 40884794 40884936 -60988233 + LTR44 LTR ERV1 371 519 0 186 370 134 0 chr13 40884940 40885067 -60988102 + L2 LINE L2 2596 2739 -575 22 0 0 0 chr13 40885410 40885432 -60987737 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr13 40886822 40886866 -60986303 + AT_rich Low_complexity Low_complexity 1 44 0 1267 294 96 12 chr13 40887286 40887796 -60985373 - MLT1H1 LTR MaLR -2 553 1 21 36 0 0 chr13 40889433 40889461 -60983708 + AT_rich Low_complexity Low_complexity 1 28 0 366 260 117 96 chr13 40889916 40890065 -60983104 - L1M4 LINE L1 -2169 3977 3833 2054 111 0 14 chr13 40890065 40890362 -60982807 - AluSc SINE Alu -16 293 1 366 260 117 96 chr13 40890362 40890589 -60982580 - L1M4 LINE L1 -2313 3833 3593 21 0 0 0 chr13 40890591 40890612 -60982557 + AT_rich Low_complexity Low_complexity 1 21 0 220 250 13 13 chr13 40890946 40891022 -60982147 + T-rich Low_complexity Low_complexity 4 79 0 1891 153 0 20 chr13 40891421 40891722 -60981447 - AluSx SINE Alu -15 297 3 345 100 0 0 chr13 40893133 40893183 -60979986 + (TA)n Simple_repeat Simple_repeat 1 50 0 222 284 302 18 chr13 40893536 40893705 -60979464 + MIR SINE MIR 46 262 0 4963 165 25 4 chr13 40894409 40895330 -60977839 - L1MA6 LINE L1 0 6300 5361 1320 200 0 31 chr13 40895376 40895636 -60977533 + AluJb SINE Alu 54 305 -7 1474 174 34 27 chr13 40896861 40897154 -60976015 + AluJo SINE Alu 1 295 -17 1594 113 5 0 chr13 40897173 40897394 -60975775 + AluSq SINE Alu 1 222 -91 25 31 0 0 chr13 40898680 40898712 -60974457 + AT_rich Low_complexity Low_complexity 1 32 0 356 231 0 46 chr13 40898822 40898952 -60974217 - L1MEc LINE L1 -5282 1114 991 301 258 0 0 chr13 40898953 40899015 -60974154 - MER96 DNA MER1_type? 0 175 114 629 270 40 0 chr13 40899028 40899228 -60973941 - L1MEc LINE L1 -5425 971 764 649 137 0 8 chr13 40899370 40899535 -60973634 - AluSg/x SINE Alu 0 312 177 279 0 0 0 chr13 40899735 40899766 -60973403 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 67 0 0 chr13 40900178 40900223 -60972946 + AT_rich Low_complexity Low_complexity 1 45 0 37 62 0 0 chr13 40900715 40900780 -60972389 + AT_rich Low_complexity Low_complexity 1 65 0 2281 96 3 3 chr13 40900933 40901236 -60971933 + AluSx SINE Alu 1 303 -9 302 101 58 0 chr13 40903686 40903755 -60969414 + (TG)n Simple_repeat Simple_repeat 2 74 0 252 0 0 0 chr13 40903937 40903965 -60969204 + (TG)n Simple_repeat Simple_repeat 2 29 0 212 211 19 0 chr13 40904453 40904505 -60968664 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 36 0 0 chr13 40905382 40905410 -60967759 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr13 40908557 40908591 -60964578 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 40910158 40910179 -60962990 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 40916446 40916466 -60956703 + (A)n Simple_repeat Simple_repeat 1 20 0 360 0 0 0 chr13 40916466 40916506 -60956663 + (TA)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr13 40917606 40917634 -60955535 + AT_rich Low_complexity Low_complexity 1 28 0 198 386 15 23 chr13 40920238 40920370 -60952799 - MIR SINE MIR -131 131 1 25 31 0 0 chr13 40920456 40920488 -60952681 + AT_rich Low_complexity Low_complexity 1 32 0 202 212 30 15 chr13 40920549 40920615 -60952554 + (TA)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr13 40920797 40920818 -60952351 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr13 40920929 40920970 -60952199 + AT_rich Low_complexity Low_complexity 1 41 0 23 68 0 0 chr13 40921218 40921262 -60951907 + AT_rich Low_complexity Low_complexity 1 44 0 441 0 0 0 chr13 40925100 40925149 -60948020 + (TG)n Simple_repeat Simple_repeat 2 50 0 186 321 0 0 chr13 40925587 40925640 -60947529 + L2 LINE L2 3256 3308 -5 635 269 40 17 chr13 40925766 40925941 -60947228 + MER46C DNA MER2_type 102 280 -58 1490 176 86 0 chr13 40926244 40926522 -60946647 - AluJb SINE Alu -8 304 3 2784 13 0 0 chr13 40926883 40927193 -60945976 + AluYb8 SINE Alu 1 310 -8 216 136 17 51 chr13 40928012 40928071 -60945098 + (TTTAA)n Simple_repeat Simple_repeat 5 61 0 1031 181 5 11 chr13 40929054 40929242 -60943927 - MER58A DNA MER1_type -1 223 37 24 0 0 0 chr13 40929897 40929921 -60943248 + AT_rich Low_complexity Low_complexity 1 24 0 955 113 7 0 chr13 40931661 40931802 -60941367 + AluSp/q SINE Alu 164 305 -8 261 163 0 0 chr13 40932096 40932145 -60941024 + T-rich Low_complexity Low_complexity 1 49 0 180 253 12 60 chr13 40932343 40932426 -60940743 + MIR SINE MIR 184 262 0 459 330 27 27 chr13 40935792 40935980 -60937189 + MIR SINE MIR 40 227 -35 24 0 0 0 chr13 40937152 40937176 -60935993 + AT_rich Low_complexity Low_complexity 1 24 0 744 43 0 0 chr13 40939911 40940003 -60933166 + (TA)n Simple_repeat Simple_repeat 2 93 0 998 230 95 40 chr13 40940003 40940409 -60932760 - MER57A LTR ERV1 -2 401 1 1773 168 3 0 chr13 40940453 40940738 -60932431 - AluSx SINE Alu -26 286 1 25 51 0 0 chr13 40943099 40943138 -60930031 + AT_rich Low_complexity Low_complexity 1 39 0 362 221 168 0 chr13 40943146 40943259 -60929910 + MIR SINE MIR 75 206 -56 398 234 11 0 chr13 40946671 40946765 -60926404 - MER67D LTR ERV1 -78 436 342 239 288 51 17 chr13 40946809 40946927 -60926242 - L1MC4a LINE L1 -1216 6592 6471 262 247 13 0 chr13 40947101 40947178 -60925991 - L1MC4 LINE L1 -51 7991 7914 470 259 42 12 chr13 40947242 40947408 -60925761 - L1MC4 LINE L1 -114 7928 7758 329 189 0 132 chr13 40947408 40947514 -60925655 + MER2 DNA MER2_type 1 92 -253 1057 130 0 47 chr13 40947524 40947716 -60925453 + AluJo SINE Alu 121 304 0 260 286 0 0 chr13 40947728 40947784 -60925385 - MER2 DNA MER2_type -5 340 285 1856 168 7 0 chr13 40947806 40948104 -60925065 + AluJb SINE Alu 11 310 -2 371 290 83 16 chr13 40948135 40948328 -60924841 - L1MC4 LINE L1 -288 7754 7549 21 36 0 0 chr13 40948997 40949025 -60924144 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr13 40949457 40949496 -60923673 + AT_rich Low_complexity Low_complexity 1 39 0 190 274 0 0 chr13 40949784 40949835 -60923334 - MIR SINE MIR -120 142 92 780 147 0 23 chr13 40950111 40950240 -60922929 - FLAM_C SINE Alu -7 126 1 2470 57 0 3 chr13 40950310 40950610 -60922559 + AluY SINE Alu 1 299 -12 1138 226 75 29 chr13 40951550 40951782 -60921387 + MLT1E2 LTR MaLR 61 316 -310 1318 62 0 11 chr13 40951782 40951959 -60921210 + L1PA4 LINE L1 5981 6155 0 1138 226 75 29 chr13 40951959 40952075 -60921094 + MLT1E2 LTR MaLR 316 425 -201 21 0 0 0 chr13 40952158 40952179 -60920990 + AT_rich Low_complexity Low_complexity 1 21 0 308 297 68 95 chr13 40952467 40952804 -60920365 - HAL1 LINE L1 -1097 1410 1083 2223 88 0 0 chr13 40952843 40953151 -60920018 - AluSq SINE Alu 0 308 1 6661 42 1 0 chr13 40953926 40954733 -60918436 + L1P LINE L1 3449 4256 -1890 21 36 0 0 chr13 40955340 40955368 -60917801 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 40955692 40955715 -60917454 + AT_rich Low_complexity Low_complexity 1 23 0 903 137 17 6 chr13 41057012 41057187 -60815982 + GA-rich Low_complexity Low_complexity 4 180 0 25 90 0 0 chr13 41057239 41057306 -60815863 + AT_rich Low_complexity Low_complexity 1 67 0 1337 220 28 3 chr13 41057941 41058223 -60814946 - AluJo SINE Alu -13 289 1 2584 181 35 22 chr13 41058223 41059018 -60814151 - L1P5 LINE L1 -660 5494 4693 299 324 37 0 chr13 41059931 41060039 -60813130 - L2 LINE L2 0 3313 3202 1681 164 41 20 chr13 41060039 41060332 -60812837 + THE1B LTR MaLR 1 299 -65 2185 172 5 15 chr13 41060332 41060739 -60812430 + THE1-int LTR MaLR 1056 1458 -122 21 36 0 0 chr13 41061033 41061061 -60812108 + AT_rich Low_complexity Low_complexity 1 28 0 517 189 18 0 chr13 41061188 41061299 -60811870 - L1MA8 LINE L1 -10 6281 6169 29 0 0 0 chr13 41061991 41062020 -60811149 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr13 41062074 41062122 -60811047 + AT_rich Low_complexity Low_complexity 1 48 0 1096 336 140 20 chr13 41062352 41062805 -60810364 - L2 LINE L2 -514 2800 2403 1652 229 23 21 chr13 41062805 41063237 -60809932 - Tigger2a DNA MER2_type -1 433 1 1096 336 140 20 chr13 41063237 41063533 -60809636 - L2 LINE L2 -911 2403 1961 1781 192 34 15 chr13 41063540 41063939 -60809230 + MLT2A2 LTR ERVL 1 345 -108 26 30 0 0 chr13 41064693 41064726 -60808443 + AT_rich Low_complexity Low_complexity 1 33 0 689 238 21 0 chr13 41064729 41064897 -60808272 + AluJb SINE Alu 138 308 0 1225 138 113 0 chr13 41064898 41065101 -60808068 - LTR17 LTR ERV1 0 780 555 9101 128 8 2 chr13 41065208 41066740 -60806429 + L1P3 LINE L1 3941 5480 -674 21 0 0 0 chr13 41067411 41067432 -60805737 + AT_rich Low_complexity Low_complexity 1 21 0 352 320 119 18 chr13 41067504 41067723 -60805446 - MIR SINE MIR -7 255 15 1360 236 18 66 chr13 41069806 41069978 -60803191 + L1M1 LINE L1 2696 2875 -4691 1596 222 0 3 chr13 41069978 41070289 -60802880 + AluJb SINE Alu 1 310 -2 1360 236 18 66 chr13 41070289 41070680 -60802489 + L1M1 LINE L1 2875 3406 -4160 763 145 0 26 chr13 41070673 41070898 -60802271 + L1PA16 LINE L1 5898 6166 0 * 3033 234 15 39 chr13 41070930 41071237 -60801932 + L1M1 LINE L1 3293 3606 -3959 664 127 18 0 chr13 41071237 41071347 -60801822 + L1MA1 LINE L1 6187 6298 -4 3033 234 15 39 chr13 41071347 41072204 -60800965 + L1M1 LINE L1 3606 4434 -3131 1682 203 26 34 chr13 41072191 41072395 -60800774 + L1PB4 LINE L1 5697 5898 -258 * 1658 123 25 4 chr13 41072395 41072638 -60800531 + AluSx SINE Alu 54 301 -11 1682 203 26 34 chr13 41072638 41072818 -60800351 + L1PB4 LINE L1 5898 6078 -78 3327 206 15 11 chr13 41073911 41074654 -60798515 - L1MB4 LINE L1 -8 6172 5427 202 381 7 43 chr13 41075624 41075763 -60797406 + L2 LINE L2 3137 3270 -2 226 162 0 0 chr13 41076749 41076786 -60796383 - MSTA LTR MaLR 0 428 392 5889 106 2 0 chr13 41076890 41077742 -60795427 + HERVH LTR ERV1 3140 3993 -3720 4301 148 1 1 chr13 41077744 41078406 -60794763 + HERVH LTR ERV1 4488 5149 -2564 1337 123 18 48 chr13 41078407 41078634 -60794535 + HERVH LTR ERV1 5600 5819 -1894 * 2399 97 45 13 chr13 41078632 41079012 -60794157 + HERVH LTR ERV1 7322 7713 0 3292 69 2 9 chr13 41079012 41079463 -60793706 + LTR7 LTR ERV1 1 448 -2 3081 121 2 11 chr13 41079465 41079927 -60793242 - LTR17 LTR ERV1 -322 458 1 258 219 16 16 chr13 41080193 41080257 -60792912 + GA-rich Low_complexity Low_complexity 2 65 0 237 196 0 0 chr13 41080370 41080426 -60792743 + (TA)n Simple_repeat Simple_repeat 2 57 0 410 36 18 0 chr13 41080460 41080516 -60792653 + (GA)n Simple_repeat Simple_repeat 2 58 0 33 25 0 0 chr13 41081565 41081605 -60791564 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr13 41082897 41082918 -60790251 + AT_rich Low_complexity Low_complexity 1 21 0 242 314 0 16 chr13 41083369 41083493 -60789676 + HAL1 LINE L1 1231 1352 -1155 951 158 25 0 chr13 41083966 41084162 -60789007 + L1MA4 LINE L1 6097 6297 -3 2248 103 0 3 chr13 41084544 41084846 -60788323 - AluSq SINE Alu -12 301 1 1719 161 151 6 chr13 41085036 41085360 -60787809 - MSTA LTR MaLR -57 371 1 8470 184 26 12 chr13 41085360 41086987 -60786182 - MSTA-int LTR MaLR 0 1651 1 1773 161 174 8 chr13 41086987 41087354 -60785815 - MSTA LTR MaLR 0 428 1 1001 281 48 99 chr13 41087546 41088112 -60785057 - MER77 LTR ERV1 -14 591 55 1661 149 0 7 chr13 41088328 41088610 -60784559 + HERVH LTR ERV1 3714 3993 -3720 4172 147 8 1 chr13 41088612 41089270 -60783899 + HERVH LTR ERV1 4488 5149 -2564 1386 109 20 0 chr13 41089295 41089496 -60783673 + HERVH LTR ERV1 5615 5819 -1894 * 2364 93 50 13 chr13 41089494 41089872 -60783297 + HERVH LTR ERV1 7322 7713 0 3189 57 27 11 chr13 41089872 41090313 -60782856 + LTR7 LTR ERV1 1 448 -2 4834 182 26 19 chr13 41090314 41091497 -60781672 + L1MA3 LINE L1 5114 6305 0 396 299 13 0 chr13 41091543 41091700 -60781469 + L1M4 LINE L1 1507 1665 -4877 567 231 75 8 chr13 41091702 41091836 -60781333 + FLAM_C SINE Alu 1 143 0 717 288 169 18 chr13 41091950 41092294 -60780875 + L1M4 LINE L1 1869 2160 -4486 3516 56 2 2 chr13 41092294 41092742 -60780427 - LTR7 LTR ERV1 -2 448 1 717 288 169 18 chr13 41092742 41093115 -60780054 + L1M4 LINE L1 2160 2694 -3952 1140 239 62 18 chr13 41093260 41093699 -60779470 + L1M4 LINE L1 2864 3321 -3323 26 30 0 0 chr13 41093853 41093886 -60779283 + AT_rich Low_complexity Low_complexity 1 33 0 664 222 28 14 chr13 41093889 41094033 -60779136 + AluJb SINE Alu 138 283 -29 24 0 0 0 chr13 41094034 41094058 -60779111 + AT_rich Low_complexity Low_complexity 1 24 0 1830 155 76 0 chr13 41094059 41094362 -60778807 - LTR17 LTR ERV1 0 780 455 3399 62 0 7 chr13 41094363 41094814 -60778355 + LTR7 LTR ERV1 1 448 -2 19595 90 25 34 chr13 41094816 41097837 -60775332 + HERVH LTR ERV1 1 2995 -4718 4416 89 2 0 chr13 41097816 41098421 -60774748 + HERVH LTR ERV1 3140 3745 -3968 * 2221 45 0 0 chr13 41098521 41098790 -60774379 + L1PA8A LINE L1 5564 5832 -299 663 250 8 48 chr13 41098807 41099075 -60774094 + pTR5 LTR ERV1 772 1028 -1410 4134 118 134 28 chr13 41099261 41100008 -60773161 + LTR12 LTR ERV1 1 826 0 901 70 84 3 chr13 41100008 41100130 -60773039 + LTR12 LTR ERV1 452 563 -151 2160 79 0 64 chr13 41100130 41100459 -60772710 + L1PA8 LINE L1 5863 6170 -2 901 70 84 3 chr13 41100459 41100475 -60772694 + LTR12 LTR ERV1 563 713 -1 323 429 16 4 chr13 41100565 41100819 -60772350 - MIR SINE MIR -2 260 4 1415 241 154 53 chr13 41100963 41101675 -60771494 + LTR1B LTR ERV1 1 983 -37 28 0 0 0 chr13 41101759 41101787 -60771382 + AT_rich Low_complexity Low_complexity 1 28 0 464 313 78 6 chr13 41101881 41102047 -60771122 - MIR SINE MIR -72 190 13 204 180 49 0 chr13 41102422 41102544 -60770625 + (TA)n Simple_repeat Simple_repeat 2 129 0 28 61 0 0 chr13 41102663 41102712 -60770457 + AT_rich Low_complexity Low_complexity 1 49 0 962 118 7 0 chr13 41103674 41103818 -60769351 - L1MA4A LINE L1 -331 5972 5828 307 132 176 22 chr13 41103825 41103916 -60769253 + L1MC4 LINE L1 6617 6721 -1321 232 250 109 33 chr13 41103841 41103933 -60769236 - L1MC4 LINE L1 -1323 6719 6621 * 1581 179 7 3 chr13 41103949 41104240 -60768929 - L1M1 LINE L1 -523 5777 5486 192 373 0 0 chr13 41104546 41104621 -60768548 - MIR SINE MIR -82 126 52 24 0 0 0 chr13 41105634 41105658 -60767511 + AT_rich Low_complexity Low_complexity 1 24 0 476 159 20 17 chr13 41105978 41105999 -60767170 - L1M1 LINE L1 -811 5492 5473 884 164 0 11 chr13 41105999 41106176 -60766993 - L1MA5 LINE L1 -2 6298 6124 476 159 20 17 chr13 41106176 41106281 -60766888 - L1M1 LINE L1 -830 5473 5369 1204 117 0 0 chr13 41106281 41106443 -60766726 - AluSp SINE Alu -18 295 134 652 233 43 95 chr13 41106783 41107015 -60766154 + AluJo SINE Alu 93 312 0 33 25 0 0 chr13 41107094 41107134 -60766035 + AT_rich Low_complexity Low_complexity 1 40 0 273 264 47 23 chr13 41107187 41107316 -60765853 - HAL1 LINE L1 -56 2451 2320 22 0 0 0 chr13 41107424 41107446 -60765723 + AT_rich Low_complexity Low_complexity 1 22 0 227 211 14 28 chr13 41107571 41107642 -60765527 + HsTC2 DNA Tc2 1827 1896 -2 307 355 29 41 chr13 41107992 41108234 -60764935 - HAL1 LINE L1 -782 1725 1487 977 241 19 23 chr13 41108500 41108766 -60764403 + L1MB4 LINE L1 5908 6172 -8 1276 200 85 11 chr13 41110394 41110664 -60762505 + AluJo SINE Alu 1 290 -22 194 62 31 0 chr13 41111291 41111323 -60761846 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 725 300 113 70 chr13 41112380 41112978 -60760191 + L1M4 LINE L1 14 658 -5884 2309 86 0 3 chr13 41112978 41113279 -60759890 - AluY SINE Alu -11 300 1 725 300 113 70 chr13 41113279 41113503 -60759666 + L1M4 LINE L1 658 871 -5671 1018 202 60 20 chr13 41113552 41113800 -60759369 + MER67C LTR ERV1 152 409 -301 281 270 54 5 chr13 41113941 41114076 -60759093 + L1M4 LINE L1 1124 1276 -5270 1966 140 3 3 chr13 41114947 41115240 -60757929 + AluSx SINE Alu 4 296 -16 21 0 0 0 chr13 41115338 41115359 -60757810 + AT_rich Low_complexity Low_complexity 1 21 0 657 287 36 10 chr13 41117708 41117903 -60755266 + MLT1E LTR MaLR 41 240 -353 297 325 94 40 chr13 41118266 41118543 -60754626 + L2 LINE L2 3021 3312 -1 214 167 33 0 chr13 41118867 41118927 -60754242 + (TA)n Simple_repeat Simple_repeat 1 62 0 318 26 0 0 chr13 41120254 41120293 -60752876 + (TG)n Simple_repeat Simple_repeat 2 40 0 1295 184 19 99 chr13 41120324 41120689 -60752480 - MLT2C1 LTR ERVL -61 336 1 296 83 21 0 chr13 41120705 41120753 -60752416 + (TA)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr13 41121199 41121228 -60751941 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr13 41122344 41122391 -60750778 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr13 41122403 41122435 -60750734 + AT_rich Low_complexity Low_complexity 1 32 0 1544 151 125 20 chr13 41122557 41122862 -60750307 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr13 41123212 41123240 -60749929 + AT_rich Low_complexity Low_complexity 1 28 0 638 260 51 46 chr13 41124265 41124461 -60748708 + L2 LINE L2 2339 2535 -779 801 220 13 0 chr13 41124461 41124620 -60748549 + MER2 DNA MER2_type 1 161 -184 375 144 0 0 chr13 41124628 41124698 -60748471 + L1M2 LINE L1 5594 5663 -493 402 148 0 37 chr13 41124707 41124788 -60748381 + MER2 DNA MER2_type 188 265 -80 353 275 106 12 chr13 41125535 41125695 -60747474 - MER58B DNA MER1_type -1 340 166 2013 126 0 25 chr13 41125700 41126018 -60747151 + AluSx SINE Alu 1 310 -2 2028 135 0 0 chr13 41126032 41126361 -60746808 + AluSx SINE Alu 1 312 0 1450 287 25 14 chr13 41126534 41126973 -60746196 + L1M4 LINE L1 1 444 -6724 308 315 37 0 chr13 41127533 41127641 -60745528 - L2 LINE L2 0 3313 3202 1782 150 41 20 chr13 41127641 41127934 -60745235 + THE1B LTR MaLR 1 299 -65 3735 116 0 4 chr13 41127934 41128461 -60744708 + THE1B-int LTR MaLR 1056 1580 0 2086 160 36 14 chr13 41128461 41128817 -60744352 + THE1B LTR MaLR 1 364 0 440 270 67 11 chr13 41129830 41130008 -60743161 + L2 LINE L2 1773 1960 -1354 1961 181 35 31 chr13 41130008 41130555 -60742614 - MLT2A2 LTR ERVL -2 552 1 1507 347 116 16 chr13 41130562 41130858 -60742311 + L2 LINE L2 1961 2226 -1087 1871 206 23 21 chr13 41130858 41131290 -60741879 + Tigger2a DNA MER2_type 1 433 -1 1507 347 116 16 chr13 41131290 41132176 -60740993 + L2 LINE L2 2226 3269 -44 285 406 0 0 chr13 41132234 41132357 -60740812 + L2 LINE L2 3150 3272 0 21 0 0 0 chr13 41132456 41132477 -60740692 + AT_rich Low_complexity Low_complexity 1 21 0 230 153 222 14 chr13 41132551 41132623 -60740546 + L1MC4 LINE L1 6615 6701 -1341 543 230 18 0 chr13 41132786 41132899 -60740270 - FLAM_A SINE Alu -16 126 12 852 210 26 26 chr13 41133104 41133299 -60739870 + MER67C LTR ERV1 215 409 -301 427 248 99 7 chr13 41133290 41133431 -60739738 + MER67D LTR ERV1 348 501 -13 * 665 279 54 17 chr13 41133439 41133790 -60739379 + L1M4 LINE L1 1646 2009 -5056 * 1573 196 14 14 chr13 41133759 41134117 -60739052 + L1 LINE L1 5783 6140 -1027 3291 75 0 7 chr13 41134117 41134568 -60738601 + LTR7 LTR ERV1 1 448 -2 20539 87 58 31 chr13 41134570 41137771 -60735398 + HERVH LTR ERV1 1 3290 -4423 3359 105 4 4 chr13 41137770 41138264 -60734905 + HERVH LTR ERV1 3500 3993 -3720 * 4029 155 8 1 chr13 41138266 41138924 -60734245 + HERVH LTR ERV1 4488 5149 -2564 1115 122 18 59 chr13 41138913 41139134 -60734035 + HERVH LTR ERV1 5590 5801 -1912 * 266 337 31 0 chr13 41139283 41139381 -60733788 - L2 LINE L2 -243 3070 2970 221 303 221 38 chr13 41139450 41139740 -60733429 - L2 LINE L2 -1444 1870 1528 24 67 0 0 chr13 41142654 41142699 -60730470 + AT_rich Low_complexity Low_complexity 1 45 0 217 217 14 14 chr13 41144783 41144852 -60728317 + (TATG)n Simple_repeat Simple_repeat 3 71 0 1569 205 3 3 chr13 41145040 41145337 -60727832 + AluJo SINE Alu 15 311 -1 455 18 0 0 chr13 41149158 41149213 -60723956 - MLT2A1 LTR ERVL 0 444 390 358 253 0 11 chr13 41149230 41149317 -60723852 + L1MC4 LINE L1 6618 6703 -1339 208 125 0 42 chr13 41149331 41149379 -60723790 + (TA)n Simple_repeat Simple_repeat 1 46 0 2132 103 3 12 chr13 41149391 41149742 -60723427 - MLT2A1 LTR ERVL -45 399 1 642 281 43 13 chr13 41149992 41150227 -60722942 - MER58 DNA MER1_type -2169 251 10 1630 253 82 21 chr13 41150324 41150810 -60722359 - MLT1E2 LTR MaLR 0 626 111 947 264 158 64 chr13 41151154 41151673 -60721496 - MLT1G1 LTR MaLR -27 568 1 566 246 4 95 chr13 41153208 41153440 -60719729 + L2 LINE L2 3088 3298 -15 788 83 16 0 chr13 41153440 41153561 -60719608 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 356 164 31 23 chr13 41153664 41153792 -60719377 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 1777 158 17 0 chr13 41153879 41154170 -60718999 + AluSx SINE Alu 5 300 -12 25 75 0 0 chr13 41155223 41155276 -60717893 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr13 41155748 41155777 -60717392 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 41156197 41156229 -60716940 + AT_rich Low_complexity Low_complexity 1 32 0 36 62 0 0 chr13 41156482 41156546 -60716623 + AT_rich Low_complexity Low_complexity 1 64 0 729 175 0 15 chr13 41157775 41157912 -60715257 + AluSg/x SINE Alu 174 308 -2 2088 192 11 20 chr13 41158119 41158561 -60714608 - MSTA-int LTR MaLR -1212 439 2 1735 164 174 8 chr13 41158562 41158929 -60714240 - MSTA LTR MaLR 0 428 1 1252 273 47 93 chr13 41159112 41159683 -60713486 - MER77 LTR ERV1 -6 599 55 26 64 0 0 chr13 41160301 41160348 -60712821 + AT_rich Low_complexity Low_complexity 1 47 0 26 50 0 0 chr13 41160373 41160413 -60712756 + AT_rich Low_complexity Low_complexity 1 40 0 343 172 11 11 chr13 41161316 41161403 -60711766 + CT-rich Low_complexity Low_complexity 3 89 0 1099 203 90 69 chr13 41161415 41161804 -60711365 - MER39 LTR ERV1 0 707 311 280 206 10 10 chr13 41161985 41162082 -60711087 + CT-rich Low_complexity Low_complexity 4 100 0 589 216 0 0 chr13 41162192 41162303 -60710866 + Tigger5 DNA MER2_type 7 117 -2206 * 940 137 68 0 chr13 41162295 41162456 -60710713 + Tigger5 DNA MER2_type 2152 2323 0 239 330 27 36 chr13 41162592 41162704 -60710465 + L2 LINE L2 2828 2938 -334 1211 120 0 0 chr13 41162756 41162923 -60710246 - AluSg/x SINE Alu -9 303 137 1016 269 101 27 chr13 41163247 41163612 -60709557 - MSTD LTR MaLR -4 392 1 236 294 102 59 chr13 41164473 41164847 -60708322 + Tigger8 DNA MER2_type 112 501 -165 234 0 0 0 chr13 41164863 41164889 -60708280 + (TC)n Simple_repeat Simple_repeat 2 27 0 328 319 30 71 chr13 41165584 41165753 -60707416 - MIR SINE MIR -66 196 35 216 236 0 18 chr13 41165988 41166043 -60707126 + (TA)n Simple_repeat Simple_repeat 2 55 0 23 33 0 0 chr13 41166508 41166538 -60706631 + AT_rich Low_complexity Low_complexity 1 30 0 2150 163 8 5 chr13 41167771 41168145 -60705024 - THE1C LTR MaLR 0 375 1 351 150 0 0 chr13 41168533 41168593 -60704576 + (TA)n Simple_repeat Simple_repeat 1 60 0 292 192 40 61 chr13 41168692 41168791 -60704378 - L1MC4 LINE L1 -1339 6703 6607 527 349 65 9 chr13 41170459 41170691 -60702478 + MIR SINE MIR 17 261 -1 312 207 24 0 chr13 41171466 41171548 -60701621 - L1MA8 LINE L1 -15 6276 6193 23 0 0 0 chr13 41171738 41171761 -60701408 + AT_rich Low_complexity Low_complexity 1 23 0 259 114 0 0 chr13 41172779 41172823 -60700346 - L1PA16 LINE L1 -9 6157 6114 2640 156 39 59 chr13 41173063 41173660 -60699509 + L1MA7 LINE L1 5707 6291 0 347 59 0 20 chr13 41173723 41173774 -60699395 + (GGAA)n Simple_repeat Simple_repeat 2 51 0 588 371 26 12 chr13 41174045 41174390 -60698779 - ERVL LTR ERVL -659 5105 4756 324 176 0 0 chr13 41175019 41175087 -60698082 + GA-rich Low_complexity Low_complexity 1 68 0 512 340 115 24 chr13 41175266 41175719 -60697450 - ERVL LTR ERVL -1287 4367 3874 27 73 0 0 chr13 41176054 41176109 -60697060 + AT_rich Low_complexity Low_complexity 1 55 0 353 345 103 26 chr13 41176358 41176694 -60696475 - ERVL LTR ERVL -2397 3257 2933 505 360 55 25 chr13 41177018 41177454 -60695715 - ERVL LTR ERVL -3112 2542 2094 9046 198 15 22 chr13 41178649 41181386 -60691783 + L1MA6 LINE L1 3347 6060 -240 286 175 18 0 chr13 41181391 41181448 -60691721 + L1MB8 LINE L1 5932 5989 -189 912 148 28 22 chr13 41181922 41182104 -60691065 + L1MB8 LINE L1 5996 6178 0 1043 257 79 14 chr13 41183674 41183751 -60689418 + MLT1B LTR MaLR 1 72 -318 2205 122 0 0 chr13 41183751 41184054 -60689115 - AluSx SINE Alu -9 303 1 1043 257 79 14 chr13 41184054 41184342 -60688827 + MLT1B LTR MaLR 72 390 0 232 218 64 26 chr13 41184342 41184420 -60688749 - L1ME3A LINE L1 -13 6157 6077 2500 143 44 5 chr13 41184485 41184897 -60688272 - MSTA LTR MaLR 0 428 1 8020 188 28 21 chr13 41184897 41186537 -60686632 - MSTA-int LTR MaLR 0 1651 1 1128 122 18 95 chr13 41186537 41186606 -60686563 - MSTA LTR MaLR 0 428 355 2039 101 0 4 chr13 41186606 41186873 -60686296 + AluSc SINE Alu 37 302 -7 1128 122 18 95 chr13 41186873 41187025 -60686144 - MSTA LTR MaLR -73 355 224 701 111 0 0 chr13 41187034 41187133 -60686036 - MSTA LTR MaLR -329 99 1 1428 301 44 9 chr13 41187230 41187755 -60685414 - L1ME3A LINE L1 -258 5912 5370 401 196 127 82 chr13 41191424 41191582 -60681587 + MLT1J LTR MaLR 6 170 -341 560 319 62 36 chr13 41192141 41192477 -60680692 + MLT1J LTR MaLR 167 511 0 229 241 19 0 chr13 41192949 41193003 -60680166 + MLT1J1 LTR MaLR 84 138 -308 389 378 63 13 chr13 41193857 41194156 -60679013 + L1MEd LINE L1 350 663 -5456 928 253 52 57 chr13 41194166 41194534 -60678635 - MER74B LTR ERVL -68 554 189 2967 175 38 4 chr13 41195504 41196063 -60677106 + HSMAR2 DNA Mariner 718 1295 -7 1206 249 62 14 chr13 41196095 41196452 -60676717 - MLT1A2 LTR MaLR 0 374 1 623 209 0 0 chr13 41196587 41196721 -60676448 - L1PB3 LINE L1 -2285 3861 3728 * 3271 225 9 10 chr13 41196717 41197513 -60675656 + L1PB3 LINE L1 3891 4685 -1461 2595 165 41 6 chr13 41197614 41198104 -60675065 + L1PB3 LINE L1 5644 6150 -4 313 348 32 32 chr13 41198372 41198527 -60674642 + MIR SINE MIR 5 159 -103 37 39 0 0 chr13 41198725 41198776 -60674393 + AT_rich Low_complexity Low_complexity 1 51 0 232 317 41 55 chr13 41199293 41199438 -60673731 - MIR SINE MIR -72 190 48 4521 174 35 11 chr13 41199584 41200430 -60672739 + L1P3 LINE L1 1 867 -5008 * 5108 165 2 2 chr13 41200418 41201313 -60671856 + L1P3 LINE L1 1742 2636 -3825 1810 217 36 20 chr13 41201413 41201855 -60671314 + L1P3 LINE L1 419 867 -5008 * 10699 158 11 6 chr13 41201843 41203743 -60669426 + L1P3 LINE L1 1742 3650 -2811 26 74 0 0 chr13 41205961 41206015 -60667154 + AT_rich Low_complexity Low_complexity 1 54 0 1756 153 177 11 chr13 41206150 41206517 -60666652 + MSTA LTR MaLR 1 428 0 1388 236 73 47 chr13 41207036 41207528 -60665641 + MLT1D LTR MaLR 1 505 0 327 25 0 0 chr13 41208627 41208667 -60664502 + (CA)n Simple_repeat Simple_repeat 2 41 0 32 0 0 0 chr13 41208789 41208821 -60664348 + AT_rich Low_complexity Low_complexity 1 32 0 354 23 0 0 chr13 41209296 41209339 -60663830 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr13 41210350 41210371 -60662798 + AT_rich Low_complexity Low_complexity 1 21 0 190 382 82 0 chr13 41211185 41211295 -60661874 - L2 LINE L2 -6 3266 3148 356 304 83 24 chr13 41211302 41211470 -60661699 + MIR SINE MIR 15 192 -70 21 0 0 0 chr13 41211593 41211614 -60661555 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 41214476 41214500 -60658669 + AT_rich Low_complexity Low_complexity 1 24 0 779 168 0 15 chr13 41214876 41215013 -60658156 - AluSg/x SINE Alu -2 310 176 189 0 0 0 chr13 41215308 41215329 -60657840 + (TC)n Simple_repeat Simple_repeat 2 22 0 388 162 19 45 chr13 41215329 41215483 -60657686 + (TA)n Simple_repeat Simple_repeat 2 151 0 2050 200 54 7 chr13 41215585 41215990 -60657179 - MSTB LTR MaLR 0 426 3 7001 195 65 33 chr13 41215996 41217592 -60655577 - MSTB-int LTR MaLR -4 1647 1 1509 254 59 5 chr13 41217592 41217998 -60655171 - MSTA LTR MaLR 0 428 1 2575 52 0 0 chr13 41218166 41218476 -60654693 - AluY SINE Alu -1 310 1 357 316 75 32 chr13 41218537 41218724 -60654445 + MIR SINE MIR 50 244 -18 1020 263 49 42 chr13 41218902 41219328 -60653841 - MER110A LTR ERV1 0 468 40 3901 280 70 44 chr13 41219620 41221391 -60651778 - MER110-int LTR ERV1 -458 4189 2373 1102 193 89 55 chr13 41221505 41221831 -60651338 + MER2 DNA MER2_type 9 345 0 1146 311 68 54 chr13 41221850 41222262 -60650907 - MER110-int LTR ERV1 -2441 2206 1801 1728 155 58 22 chr13 41222262 41222624 -60650545 - THE1C LTR MaLR 0 375 1 1146 311 68 54 chr13 41222624 41222762 -60650407 - MER110-int LTR ERV1 -2846 1801 1666 2380 90 0 3 chr13 41222762 41223072 -60650097 - AluSx SINE Alu 0 312 4 1146 311 68 54 chr13 41223072 41223333 -60649836 - MER110-int LTR ERV1 -2981 1666 1383 481 370 46 27 chr13 41223425 41223863 -60649306 - MER110-int LTR ERV1 -3244 3557 3112 572 296 90 85 chr13 41224072 41224683 -60648486 - MER110-int LTR ERV1 -3868 779 166 2837 254 43 23 chr13 41224716 41225957 -60647212 - L1MEc LINE L1 -2029 4186 2922 491 308 0 0 chr13 41225957 41226087 -60647082 + Tigger3(Golem) DNA MER2_type 1 130 -2899 1278 188 33 0 chr13 41226147 41226387 -60646782 + Tigger3(Golem) DNA MER2_type 2782 3029 0 1562 249 87 41 chr13 41226417 41227379 -60645790 - L1MEc LINE L1 -3324 2891 1922 1909 76 0 4 chr13 41227384 41227647 -60645522 + LTR7 LTR ERV1 1 262 -188 216 0 0 0 chr13 41327740 41327764 -60545405 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2029 154 3 0 chr13 41327993 41328304 -60544865 - AluSx SINE Alu 0 312 1 187 277 181 32 chr13 41328582 41328676 -60544493 + L3 LINE CR1 1447 1554 -23 261 128 0 0 chr13 41329554 41329601 -60543568 + (TC)n Simple_repeat Simple_repeat 2 48 0 2336 94 0 0 chr13 41329873 41330182 -60542987 + AluSg SINE Alu 1 309 -1 213 235 0 0 chr13 41330265 41330316 -60542853 + (TA)n Simple_repeat Simple_repeat 2 52 0 231 280 60 60 chr13 41330892 41330992 -60542177 + MIR SINE MIR 3 102 -160 607 277 69 5 chr13 41330994 41331196 -60541973 + MER58A DNA MER1_type 9 223 -1 493 266 57 6 chr13 41331196 41331354 -60541815 + MIR SINE MIR 97 262 0 187 51 0 51 chr13 41331452 41331491 -60541678 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr13 41334347 41334372 -60538797 + AT_rich Low_complexity Low_complexity 1 25 0 291 139 0 14 chr13 41334900 41334957 -60538212 + MLT2B1 LTR ERVL 399 518 -2 180 347 27 82 chr13 41335142 41335289 -60537880 - L2 LINE L2 -237 3035 2897 1413 168 25 35 chr13 41335579 41335864 -60537305 + AluJo SINE Alu 21 302 -10 22 35 0 0 chr13 41336175 41336204 -60536965 + AT_rich Low_complexity Low_complexity 1 29 0 728 126 34 6 chr13 41337502 41337677 -60535492 + (TA)n Simple_repeat Simple_repeat 1 180 0 229 219 85 0 chr13 41337688 41337770 -60535399 + L1MC4 LINE L1 6615 6703 -1339 408 82 52 10 chr13 41337773 41337870 -60535299 + (TA)n Simple_repeat Simple_repeat 2 102 0 255 109 0 36 chr13 41337873 41337928 -60535241 - LTR66 LTR ERVL -171 439 387 25 0 0 0 chr13 41338637 41338662 -60534507 + AT_rich Low_complexity Low_complexity 1 25 0 275 312 0 13 chr13 41338784 41338861 -60534308 - MIR SINE MIR -105 157 82 346 318 69 12 chr13 41338895 41339068 -60534101 + L2 LINE L2 2477 2659 -655 2377 192 16 5 chr13 41339123 41339550 -60533619 + MLT2B1 LTR ERVL 3 434 -86 10217 166 34 41 chr13 41339551 41341545 -60531624 + ERVL-B1 LTR ERVL 3779 5758 -6 2242 209 46 28 chr13 41341545 41341999 -60531170 + MLT2B1 LTR ERVL 9 474 -46 879 17 26 0 chr13 41341999 41342116 -60531053 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 2242 209 46 28 chr13 41342116 41342164 -60531005 + MLT2B1 LTR ERVL 474 520 0 618 260 49 116 chr13 41342177 41342747 -60530422 + L2 LINE L2 2713 3313 0 1658 193 3 3 chr13 41342940 41343236 -60529933 + AluJb SINE Alu 1 296 -16 623 352 60 17 chr13 41343656 41344008 -60529161 - L2 LINE L2 0 3313 2947 434 371 96 30 chr13 41344064 41344471 -60528698 - L2 LINE L2 -434 2880 2447 248 279 111 71 chr13 41344642 41345506 -60527663 + L1M4 LINE L1 3705 4598 -1548 726 283 87 25 chr13 41345551 41345919 -60527250 + L1MC4 LINE L1 6698 7088 -954 770 207 7 0 chr13 41346219 41346364 -60526805 + FRAM SINE Alu 1 146 -30 252 0 0 0 chr13 41346443 41346471 -60526698 + (CA)n Simple_repeat Simple_repeat 2 29 0 328 127 0 28 chr13 41346486 41346557 -60526612 + (TA)n Simple_repeat Simple_repeat 1 69 0 461 47 16 0 chr13 41346559 41346623 -60526546 + (CA)n Simple_repeat Simple_repeat 2 66 0 1745 112 0 68 chr13 41346623 41346917 -60526252 - AluSx SINE Alu -38 274 1 226 281 129 0 chr13 41347232 41347410 -60525759 + L1MC4 LINE L1 7841 8041 -1 2410 176 31 0 chr13 41347453 41347907 -60525262 - L1 LINE L1 -914 5232 4765 25 51 0 0 chr13 41347937 41347976 -60525193 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr13 41348394 41348417 -60524752 + AT_rich Low_complexity Low_complexity 1 23 0 691 320 30 9 chr13 41348619 41348850 -60524319 - MIR SINE MIR -24 238 3 238 249 378 16 chr13 41349957 41350142 -60523027 + MIR SINE MIR 2 253 -9 786 239 43 14 chr13 41350279 41350488 -60522681 + MER20 DNA MER1_type 5 219 0 208 349 121 12 chr13 41350548 41350631 -60522538 - L2 LINE L2 -30 3242 3151 270 0 0 0 chr13 41353202 41353232 -60519937 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3106 153 17 25 chr13 41356212 41356743 -60516426 + MER1A DNA MER1_type 1 527 0 393 330 126 38 chr13 41357024 41357421 -60515748 + L3 LINE CR1 982 1413 -164 250 157 0 0 chr13 41358212 41358263 -60514906 + L1MC4 LINE L1 6653 6703 -1339 328 275 0 42 chr13 41358269 41358413 -60514756 - L1MC4 LINE L1 -1339 6703 6614 784 274 11 0 chr13 41358466 41358645 -60514524 - MER63A DNA MER1_type -16 194 14 21 36 0 0 chr13 41359725 41359753 -60513416 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr13 41359998 41360041 -60513128 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 205 0 0 chr13 41360545 41360584 -60512585 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr13 41361036 41361062 -60512107 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 41361102 41361127 -60512042 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr13 41361821 41361845 -60511324 + AT_rich Low_complexity Low_complexity 1 24 0 325 358 180 16 chr13 41362741 41363168 -60510001 - L2 LINE L2 -739 2575 2079 220 150 50 17 chr13 41363546 41363606 -60509563 + (TA)n Simple_repeat Simple_repeat 1 62 0 1040 162 40 0 chr13 41364119 41364317 -60508852 - L1MA4A LINE L1 -4 6299 6094 3371 151 19 62 chr13 41364121 41364579 -60508590 - L1MA4A LINE L1 -6 6297 5878 1538 108 0 5 chr13 41364579 41364793 -60508376 + AluSg/x SINE Alu 91 303 -9 3371 151 19 62 chr13 41364793 41365030 -60508139 - L1MA4A LINE L1 -425 5878 5632 1981 142 16 13 chr13 41365031 41365167 -60508002 + AluSx SINE Alu 1 135 -201 2500 62 0 0 chr13 41365167 41365472 -60507697 + AluY SINE Alu 1 305 -6 1981 142 16 13 chr13 41365472 41365670 -60507499 + AluSx SINE Alu 135 336 0 1960 152 2 74 chr13 41365671 41366208 -60506961 - L1MA4A LINE L1 -661 5642 5144 1877 164 15 1 chr13 41366217 41366521 -60506648 + THE1B LTR MaLR 66 364 0 12415 213 32 29 chr13 41366524 41367721 -60505448 - L1 LINE L1 -1000 5848 4655 1692 181 7 3 chr13 41367721 41368019 -60505150 - AluJo SINE Alu -13 299 1 12415 213 32 29 chr13 41368019 41371004 -60502165 - L1 LINE L1 -2193 4655 1642 1342 257 189 56 chr13 41371012 41371344 -60501825 - L1 LINE L1 -5868 981 695 216 0 0 0 chr13 41371344 41371368 -60501801 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1342 257 189 56 chr13 41371368 41371762 -60501407 - L1 LINE L1 -6154 695 10 621 251 16 11 chr13 41372554 41372745 -60500424 + Charlie2 DNA MER1_type 1859 2050 -812 2028 257 31 21 chr13 41373865 41374383 -60498786 + MLT1F LTR MaLR 11 533 -9 631 280 79 5 chr13 41374981 41375170 -60497999 - MIR SINE MIR -6 256 54 19124 183 29 43 chr13 41375222 41376361 -60496808 - L1P3 LINE L1 -1481 5367 4214 2070 123 7 0 chr13 41376361 41376654 -60496515 - AluSp SINE Alu -18 295 1 19124 183 29 43 chr13 41376654 41380513 -60492656 - L1P3 LINE L1 -2634 4214 2 1400 183 63 22 chr13 41380520 41380947 -60492222 + Tigger7 DNA MER2_type 107 2487 0 260 261 7 35 chr13 41380959 41381042 -60492127 + (TA)n Simple_repeat Simple_repeat 2 81 -58 1752 175 10 14 chr13 41381042 41381334 -60491835 - AluJb SINE Alu -21 291 1 260 261 7 35 chr13 41381334 41381392 -60491777 + (TA)n Simple_repeat Simple_repeat 81 139 0 985 288 115 29 chr13 41381392 41381485 -60491684 + L1MC4 LINE L1 6615 6699 -1343 217 0 61 0 chr13 41381485 41381518 -60491651 + (TA)n Simple_repeat Simple_repeat 2 36 0 985 288 115 29 chr13 41381518 41381828 -60491341 + L1MC4 LINE L1 6699 6981 -1061 1555 167 62 69 chr13 41381828 41381867 -60491302 - MLT1B LTR MaLR -3 387 349 2213 74 0 23 chr13 41381867 41382177 -60490992 + AluY SINE Alu 1 303 -8 1555 167 62 69 chr13 41382177 41382527 -60490642 - MLT1B LTR MaLR -41 349 1 985 288 115 29 chr13 41382527 41383109 -60490060 + L1MC4 LINE L1 6981 7869 -173 373 348 38 45 chr13 41383524 41383811 -60489358 - L1ME3 LINE L1 -324 5838 5554 392 351 48 0 chr13 41383940 41384108 -60489061 - L1ME3 LINE L1 -1050 5096 4921 345 318 113 15 chr13 41384260 41384455 -60488714 + L1M4 LINE L1 4127 4340 -1806 343 189 27 81 chr13 41384517 41384628 -60488541 + L1MA8 LINE L1 6180 6284 -7 2221 114 3 0 chr13 41384769 41385075 -60488094 - AluSx SINE Alu -5 307 1 686 269 24 12 chr13 41386466 41386633 -60486536 - MER45A DNA AcHobo 0 178 10 2493 61 0 0 chr13 41387256 41387567 -60485602 + AluY SINE Alu 1 311 0 30 0 0 0 chr13 41387817 41387847 -60485322 + AT_rich Low_complexity Low_complexity 1 30 0 570 288 137 32 chr13 41388007 41388568 -60484601 - L1ME4a LINE L1 -1 6054 5439 272 266 0 21 chr13 41389131 41389225 -60483944 - L1ME4a LINE L1 -2203 3877 3786 26 30 0 0 chr13 41389738 41389771 -60483398 + AT_rich Low_complexity Low_complexity 1 33 0 68 13 0 0 chr13 41389788 41389863 -60483306 + AT_rich Low_complexity Low_complexity 1 75 0 409 44 125 0 chr13 41389868 41390028 -60483141 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr13 41390031 41390054 -60483115 + AT_rich Low_complexity Low_complexity 1 23 0 281 195 87 0 chr13 41390056 41390205 -60482964 + (TATAA)n Simple_repeat Simple_repeat 2 163 0 25 0 0 0 chr13 41390425 41390450 -60482719 + AT_rich Low_complexity Low_complexity 1 25 0 391 294 114 16 chr13 41390578 41390762 -60482407 - MLT1J2 LTR MaLR -2 448 247 24 67 0 0 chr13 41390861 41390906 -60482263 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr13 41393378 41393401 -60479768 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 937 276 12 12 chr13 41393409 41393659 -60479510 - MIR SINE MIR -11 251 2 320 214 0 0 chr13 41393846 41393921 -60479248 - L1ME LINE L1 -4179 1941 1827 716 284 75 39 chr13 41393969 41394962 -60478207 - L1ME LINE L1 -4482 1779 703 203 221 0 29 chr13 41395348 41395416 -60477753 + (TAA)n Simple_repeat Simple_repeat 1 66 0 23 0 0 0 chr13 41395469 41395492 -60477677 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr13 41396382 41396425 -60476744 + AT_rich Low_complexity Low_complexity 1 43 0 376 271 179 33 chr13 41397936 41398087 -60475082 + MER5A DNA MER1_type 11 183 -6 1096 309 63 34 chr13 41398188 41398742 -60474427 + L1MA6 LINE L1 12 581 -6208 12695 223 44 20 chr13 41398904 41404143 -60469026 + L1MA6 LINE L1 1121 6144 -743 927 153 6 6 chr13 41404156 41404313 -60468856 + FRAM SINE Alu 12 168 -8 3952 158 70 20 chr13 41404319 41405079 -60468090 + L1MA6 LINE L1 6142 6939 -3 36 0 0 0 chr13 41405086 41405122 -60468047 + AT_rich Low_complexity Low_complexity 1 36 0 1105 305 100 12 chr13 41407881 41408463 -60464706 - L2 LINE L2 -171 3142 2508 3439 34 25 0 chr13 41408463 41408902 -60464267 - L1PA5 LINE L1 -765 5381 4932 6313 38 3 11 chr13 41408902 41409686 -60463483 + L1PA5 LINE L1 5378 6154 0 749 265 143 7 chr13 41409698 41409985 -60463184 - L2 LINE L2 -834 2480 2155 207 146 49 0 chr13 41410389 41410430 -60462739 + (AATAG)n Simple_repeat Simple_repeat 4 46 0 281 224 158 0 chr13 41410594 41410670 -60462499 + MIR3 SINE MIR 121 208 0 1069 164 38 0 chr13 41411524 41411737 -60461432 + L1MA8 LINE L1 6070 6290 -1 373 295 36 7 chr13 41412100 41412239 -60460930 + MER112 DNA MER1_type 1 143 -117 212 59 29 0 chr13 41412258 41412292 -60460877 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 218 200 22 0 chr13 41413045 41413090 -60460079 - L2 LINE L2 0 3313 3268 366 235 68 23 chr13 41413471 41413603 -60459566 - LTR27 LTR ERV1 0 636 499 2263 213 28 15 chr13 41413674 41414196 -60458973 - LTR27 LTR ERV1 -140 496 1 242 252 43 101 chr13 41414292 41414431 -60458738 - MER5A DNA MER1_type -18 171 41 233 373 19 31 chr13 41414299 41414460 -60458709 + MER5A DNA MER1_type 31 189 0 * 384 281 100 52 chr13 41414579 41414810 -60458359 + MIR SINE MIR 20 261 -1 622 316 30 17 chr13 41414843 41415074 -60458095 + MIR SINE MIR 13 246 -16 865 230 93 80 chr13 41415814 41416440 -60456729 + MER52A LTR ERV1 270 738 -282 538 306 43 27 chr13 41416508 41416694 -60456475 + MER52A LTR ERV1 1221 1409 -346 542 271 0 54 chr13 41416765 41416931 -60456238 + MER52A LTR ERV1 1599 1755 0 258 293 198 22 chr13 41416964 41417186 -60455983 + L2 LINE L2 2609 2869 -445 300 333 94 83 chr13 41417297 41417362 -60455807 + L2 LINE L2 2994 3057 -215 1631 146 46 0 chr13 41417362 41417622 -60455547 + AluSx SINE Alu 21 292 -20 300 333 94 83 chr13 41417622 41417832 -60455337 + L2 LINE L2 3057 3272 0 679 159 0 0 chr13 41418851 41418958 -60454211 - FLAM_C SINE Alu -7 136 30 186 43 0 0 chr13 41419025 41419048 -60454121 + (T)n Simple_repeat Simple_repeat 1 23 0 199 360 85 20 chr13 41419080 41419233 -60453936 + L3 LINE CR1 1341 1503 -74 689 307 28 5 chr13 41420583 41420795 -60452374 - MER58A DNA MER1_type 0 224 8 22 56 0 0 chr13 41421685 41421721 -60451448 + AT_rich Low_complexity Low_complexity 1 36 0 587 354 111 27 chr13 41422254 41423099 -60450070 - L2 LINE L2 -61 3252 2328 486 61 0 0 chr13 41424096 41424162 -60449007 + (TC)n Simple_repeat Simple_repeat 1 66 0 360 0 0 0 chr13 41424162 41424202 -60448967 + (TA)n Simple_repeat Simple_repeat 1 40 0 1991 188 14 80 chr13 41424258 41424544 -60448625 + MSTB2 LTR MaLR 1 304 -153 3729 132 57 79 chr13 41424544 41425346 -60447823 + LTR1 LTR ERV1 1 785 0 1991 188 14 80 chr13 41425346 41425366 -60447803 + MSTB2 LTR MaLR 304 324 -133 1873 165 10 0 chr13 41425366 41425663 -60447506 - AluSx SINE Alu -12 300 1 1991 188 14 80 chr13 41425663 41425844 -60447325 + MSTB2 LTR MaLR 324 457 0 316 228 188 10 chr13 41426241 41426342 -60446827 - L1 LINE L1 -2739 3407 3289 1223 263 31 31 chr13 41426420 41426835 -60446334 - LTR52 LTR ERVL -3 418 4 182 37 37 0 chr13 41426964 41426991 -60446178 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 27 62 0 0 chr13 41427439 41427487 -60445682 + AT_rich Low_complexity Low_complexity 1 48 0 308 328 8 8 chr13 41427877 41428005 -60445164 - MER94 DNA DNA -5 129 2 250 315 36 18 chr13 41428099 41428210 -60444959 - MIR SINE MIR -103 159 47 1583 158 8 8 chr13 41428629 41428889 -60444280 + MER4E LTR ERV1 520 779 0 232 304 68 99 chr13 41430048 41430209 -60442960 - L2 LINE L2 -1 3271 3116 279 295 170 67 chr13 41431026 41431250 -60441919 - MIR SINE MIR -10 252 6 246 105 0 0 chr13 41431381 41431419 -60441750 + (ATG)n Simple_repeat Simple_repeat 2 39 0 663 306 15 0 chr13 41431428 41431624 -60441545 - MIR SINE MIR -15 247 49 3201 212 60 27 chr13 41431976 41432793 -60440376 - L1MA9 LINE L1 -40 6272 5429 180 241 74 0 chr13 41433015 41433069 -60440100 + L2 LINE L2 3256 3313 0 229 204 0 0 chr13 41433069 41433118 -60440051 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 729 234 43 5 chr13 41433430 41433614 -60439555 - MER3 DNA MER1_type -18 191 1 1474 186 94 0 chr13 41434137 41434465 -60438704 + MER46B DNA MER2_type 3 236 0 222 241 78 103 chr13 41436702 41436818 -60436351 - L2 LINE L2 -2 3270 3158 2231 92 0 0 chr13 41436926 41437233 -60435936 - AluSx SINE Alu 0 307 1 207 0 0 0 chr13 41437239 41437262 -60435907 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2217 121 38 3 chr13 41437329 41437660 -60435509 - THE1A LTR MaLR -18 408 3 7607 170 52 46 chr13 41437662 41439301 -60433868 - MST-int LTR MaLR 0 1651 3 2131 101 38 71 chr13 41439303 41439670 -60433499 - THE1A LTR MaLR 0 355 1 219 385 88 5 chr13 41441125 41441317 -60431852 + MIR SINE MIR 53 260 -2 13498 146 37 6 chr13 41441591 41443934 -60429235 - Tigger1 DNA MER2_type -3 2415 1 1947 130 3 7 chr13 41445130 41445460 -60427709 + AluSq SINE Alu 1 329 0 33 0 0 0 chr13 41445526 41445559 -60427610 + AT_rich Low_complexity Low_complexity 1 33 0 200 189 0 0 chr13 41447035 41447072 -60426097 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 32 0 0 chr13 41449018 41449049 -60424120 + AT_rich Low_complexity Low_complexity 1 31 0 308 340 19 13 chr13 41450095 41450254 -60422915 + MIR SINE MIR 88 247 -15 202 178 0 27 chr13 41450269 41450342 -60422827 + T-rich Low_complexity Low_complexity 2 72 0 803 180 86 99 chr13 41450354 41450576 -60422593 + MER20 DNA MER1_type 1 219 0 351 289 60 40 chr13 41450970 41451171 -60421998 + LTR40c LTR ERVL 167 371 -94 186 43 0 0 chr13 41454712 41454735 -60418434 + (CA)n Simple_repeat Simple_repeat 2 24 0 446 0 19 0 chr13 41454735 41454751 -60418418 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 446 0 19 0 chr13 41454751 41454805 -60418364 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1760 150 87 3 chr13 41454811 41455144 -60418025 - MER46B DNA MER2_type 0 236 1 16293 170 23 49 chr13 41456474 41458111 -60415058 + L1PA7 LINE L1 3 1682 -5167 3414 136 22 22 chr13 41458111 41458699 -60414470 - LTR4 LTR ERV1 0 588 1 16293 170 23 49 chr13 41458699 41459157 -60414012 + L1PA7 LINE L1 1682 2151 -4698 1501 211 7 10 chr13 41459157 41459455 -60413714 - AluJb SINE Alu -15 297 1 16293 170 23 49 chr13 41459455 41460206 -60412963 + L1PA7 LINE L1 2151 2740 -4109 3410 147 21 0 chr13 41460206 41460722 -60412447 - MER1A DNA MER1_type 0 527 1 16293 170 23 49 chr13 41460722 41461538 -60411631 + L1PA7 LINE L1 2740 3576 -3273 7338 195 54 25 chr13 41461531 41461604 -60411565 + L1PA7 LINE L1 4119 4188 -2681 * 180 0 0 0 chr13 41461604 41461624 -60411545 + (TAA)n Simple_repeat Simple_repeat 2 21 0 7338 195 54 25 chr13 41461624 41463385 -60409784 + L1PA7 LINE L1 4188 6052 -817 3258 81 0 5 chr13 41463385 41463829 -60409340 + L1PA7 LINE L1 6413 6854 -3 7338 195 54 25 chr13 41463829 41464261 -60408908 + L1PA7 LINE L1 6052 6470 -399 471 267 50 44 chr13 41465093 41465273 -60407896 + MIR SINE MIR 82 262 0 367 315 35 54 chr13 41466991 41467251 -60405918 + LTR33 LTR ERVL 21 275 -246 231 179 0 0 chr13 41467278 41467317 -60405852 + tRNA-Thr-ACT tRNA tRNA 2 40 -37 232 301 48 60 chr13 41467319 41467485 -60405684 + LTR33 LTR ERVL 345 508 -13 2026 187 48 34 chr13 41467615 41468045 -60405124 - MSTB1 LTR MaLR 0 432 2 507 359 28 42 chr13 41468417 41468704 -60404465 - LTR16C LTR ERVL -60 431 149 341 359 19 19 chr13 41469845 41470001 -60403168 + ERVL LTR ERVL 1531 1686 -4078 404 341 53 16 chr13 41470080 41470326 -60402843 + ERVL LTR ERVL 1744 1998 -3487 490 318 71 0 chr13 41470479 41470677 -60402492 + ERVL LTR ERVL 2292 2503 -3261 728 309 83 17 chr13 41470702 41471110 -60402059 + LTR16A1 LTR ERVL 10 444 -13 829 350 63 20 chr13 41471310 41471799 -60401370 + ERVL LTR ERVL 4518 5027 -737 2026 101 19 35 chr13 41472084 41472097 -60401072 - AluSx SINE Alu 0 312 300 240 35 0 0 chr13 41472097 41472126 -60401043 + (TC)n Simple_repeat Simple_repeat 2 30 0 2026 101 19 35 chr13 41472126 41472429 -60400740 - AluSx SINE Alu -12 300 1 7150 142 44 24 chr13 41472952 41474227 -60398942 - HSMAR2 DNA Mariner -1 1301 2 26 0 0 0 chr13 41474465 41474491 -60398678 + AT_rich Low_complexity Low_complexity 1 26 0 1485 188 16 43 chr13 41474667 41474971 -60398198 + AluJo SINE Alu 1 296 -16 242 287 17 44 chr13 41475431 41475612 -60397557 + CT-rich Low_complexity Low_complexity 2 177 0 220 232 36 0 chr13 41476243 41476299 -60396870 + (CTA)n Simple_repeat Simple_repeat 1 58 0 27 0 0 0 chr13 41476860 41476887 -60396282 + AT_rich Low_complexity Low_complexity 1 27 0 481 118 0 13 chr13 41476887 41476963 -60396206 - tRNA-Glu-GAG tRNA tRNA 0 75 1 7443 33 1 1 chr13 41476969 41478113 -60395056 + L1PA4 LINE L1 5009 6152 -3 29 28 0 0 chr13 41478214 41478250 -60394919 + AT_rich Low_complexity Low_complexity 1 36 0 213 132 0 0 chr13 41478956 41478994 -60394175 + (CTA)n Simple_repeat Simple_repeat 1 38 0 237 65 0 0 chr13 41479073 41479104 -60394065 + (TATG)n Simple_repeat Simple_repeat 4 34 0 21 0 0 0 chr13 41479130 41479151 -60394018 + AT_rich Low_complexity Low_complexity 1 21 0 2321 271 48 34 chr13 41479172 41480036 -60393133 + L1M4c LINE L1 1001 1851 -4531 2360 93 3 0 chr13 41480036 41480336 -60392833 + AluSp SINE Alu 1 301 -12 2321 271 48 34 chr13 41480336 41480661 -60392508 + L1M4c LINE L1 1851 2170 -4212 2177 88 0 0 chr13 41480661 41480933 -60392236 + AluSc SINE Alu 38 309 0 2321 271 48 34 chr13 41480933 41481222 -60391947 + L1M4c LINE L1 2170 2572 -3810 2209 202 56 0 chr13 41481229 41481344 -60391825 + L1MB1 LINE L1 5661 5768 -400 381 93 0 0 chr13 41481344 41481398 -60391771 + (TA)n Simple_repeat Simple_repeat 1 54 0 2209 202 56 0 chr13 41481398 41481763 -60391406 + L1MB1 LINE L1 5768 6168 0 22 0 0 0 chr13 41482507 41482529 -60390640 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr13 41483692 41483744 -60389425 + AT_rich Low_complexity Low_complexity 1 52 0 1431 196 55 149 chr13 41483907 41484476 -60388693 + MLT2B3 LTR ERVL 1 622 68 402 21 0 0 chr13 41484476 41484523 -60388646 + (CA)n Simple_repeat Simple_repeat 1 47 0 198 0 0 0 chr13 41484522 41484544 -60388625 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 1431 196 55 149 chr13 41484523 41484577 -60388592 + MLT2B3 LTR ERVL 621 546 -8 22 0 0 0 chr13 41484702 41484724 -60388445 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr13 41485014 41485044 -60388125 + AT_rich Low_complexity Low_complexity 1 30 0 246 62 0 0 chr13 41485137 41485169 -60388000 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 267 31 0 0 chr13 41485168 41485200 -60387969 + (GA)n Simple_repeat Simple_repeat 1 32 0 13122 161 19 26 chr13 41485653 41485697 -60387472 + Tigger1 DNA MER2_type 14 57 -2361 2028 122 34 0 chr13 41485697 41485991 -60387178 - AluY SINE Alu -7 304 1 13122 161 19 26 chr13 41485991 41488148 -60385021 + Tigger1 DNA MER2_type 57 2198 -220 1895 160 3 13 chr13 41488148 41488461 -60384708 - AluSx SINE Alu -1 311 2 13122 161 19 26 chr13 41488461 41488674 -60384495 + Tigger1 DNA MER2_type 2198 2411 -7 569 235 25 0 chr13 41489512 41489631 -60383538 + FLAM_A SINE Alu 4 125 -8 39 60 0 0 chr13 41490401 41490468 -60382701 + AT_rich Low_complexity Low_complexity 1 67 0 618 314 16 48 chr13 41490591 41490839 -60382330 - MIR SINE MIR 0 262 23 207 120 114 0 chr13 41492332 41492490 -60380679 + (TA)n Simple_repeat Simple_repeat 1 176 0 23 54 0 0 chr13 41493718 41493755 -60379414 + AT_rich Low_complexity Low_complexity 1 37 0 7889 86 5 7 chr13 41495140 41496213 -60376956 - MER11C LTR ERVK 0 1071 1 6012 110 8 11 chr13 41496272 41497954 -60375215 + L1PA12 LINE L1 4469 6166 -2 391 282 41 6 chr13 41498747 41498917 -60374252 - L1MEd LINE L1 -4971 1148 973 2241 120 0 10 chr13 41499636 41499944 -60373225 - AluSx SINE Alu -7 305 1 1151 239 19 69 chr13 41501148 41501525 -60371644 - MLT1E1 LTR MaLR 0 654 297 336 211 14 14 chr13 41501549 41501620 -60371549 - MLT1E1 LTR MaLR -541 113 43 2399 78 0 0 chr13 41502467 41502761 -60370408 + AluSc SINE Alu 1 294 -15 23 0 0 0 chr13 41503201 41503224 -60369945 + AT_rich Low_complexity Low_complexity 1 23 0 338 138 35 11 chr13 41503407 41503494 -60369675 + GA-rich Low_complexity Low_complexity 3 91 0 431 331 100 56 chr13 41503579 41504111 -60369058 + L1MEd LINE L1 524 1078 -5041 1354 330 130 49 chr13 41505969 41507569 -60365600 - L2 LINE L2 -370 2944 1216 380 271 43 105 chr13 41509611 41509962 -60363207 - L1ME LINE L1 -359 5811 5483 364 277 123 68 chr13 41510087 41510484 -60362685 - L1ME LINE L1 -824 5322 4904 339 239 0 0 chr13 41510744 41510815 -60362354 + MIR SINE MIR 20 90 -172 236 213 33 0 chr13 41510931 41510992 -60362177 - L1MC4 LINE L1 -1340 6702 6640 407 281 23 74 chr13 41511002 41511219 -60361950 + Charlie2 DNA MER1_type 113 318 -2464 1849 242 39 74 chr13 41511223 41511409 -60361760 + Charlie2 DNA MER1_type 1865 2056 -806 2778 236 29 20 chr13 41511409 41512091 -60361078 + MER76 LTR ERV 1 688 0 1849 242 39 74 chr13 41512091 41512937 -60360232 + Charlie2 DNA MER1_type 2056 2861 -1 544 269 110 16 chr13 41513269 41513665 -60359504 - LTR33 LTR ERVL -4 517 59 23 0 0 0 chr13 41513870 41513893 -60359276 + AT_rich Low_complexity Low_complexity 1 23 0 1967 170 20 3 chr13 41514102 41514444 -60358725 - MER7A DNA MER2_type 0 346 1 584 137 218 19 chr13 41514445 41514656 -60358513 - MER33 DNA MER1_type -38 286 34 1866 96 0 26 chr13 41514959 41515230 -60357939 + AluSc SINE Alu 36 299 -10 1285 226 3 0 chr13 41515346 41515633 -60357536 - L1MB7 LINE L1 -16 6168 5881 1198 187 49 16 chr13 41515635 41515881 -60357288 - MSTB LTR MaLR -2 424 171 556 217 19 0 chr13 41515892 41515998 -60357171 + MSTB LTR MaLR 83 190 -236 * 2027 242 95 39 chr13 41515997 41516851 -60356318 - L1ME LINE L1 -1642 4504 3603 231 36 0 0 chr13 41516910 41516938 -60356231 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1314 191 62 10 chr13 41517551 41517839 -60355330 - AluJb SINE Alu -7 305 3 193 333 118 43 chr13 41518803 41518896 -60354273 - L2 LINE L2 -20 3252 3153 395 221 0 9 chr13 41520721 41520834 -60352335 + (TG)n Simple_repeat Simple_repeat 2 113 0 346 255 0 39 chr13 41520834 41520936 -60352233 + L1MC4 LINE L1 6614 6711 -1331 356 216 43 11 chr13 41521303 41521484 -60351685 + L1MA9 LINE L1 6008 6290 -22 391 296 17 0 chr13 41522359 41522474 -60350695 + L2 LINE L2 3192 3308 -5 351 0 0 0 chr13 41522604 41522643 -60350526 + (TA)n Simple_repeat Simple_repeat 1 39 0 2242 114 0 0 chr13 41522643 41522951 -60350218 - AluSg SINE Alu -1 309 2 292 291 118 16 chr13 41523523 41523650 -60349519 + MIR SINE MIR 52 191 -71 647 74 0 11 chr13 41524903 41524998 -60348171 + (TA)n Simple_repeat Simple_repeat 2 95 0 1596 171 100 0 chr13 41525681 41525962 -60347207 - MER1B DNA MER1_type 0 339 31 747 249 53 42 chr13 41527734 41528019 -60345150 - L1MB7 LINE L1 -415 5751 5464 996 266 145 13 chr13 41528038 41528582 -60344587 - L1MB7 LINE L1 -1302 4844 4229 290 242 85 18 chr13 41528602 41528825 -60344344 - L1MB7 LINE L1 -1889 4257 3876 * 581 351 53 39 chr13 41528823 41529614 -60343555 - L1MEc LINE L1 -5488 908 107 402 255 90 43 chr13 41529711 41530033 -60343136 + L1M4 LINE L1 5045 5381 -765 25 83 0 0 chr13 41530273 41530333 -60342836 + AT_rich Low_complexity Low_complexity 1 60 0 402 397 24 27 chr13 41531621 41531916 -60341253 - L2 LINE L2 -31 3241 2948 194 128 26 0 chr13 41532116 41532155 -60341014 + (TAA)n Simple_repeat Simple_repeat 1 40 0 204 330 62 10 chr13 41532213 41532310 -60340859 - MIR SINE MIR -61 147 46 282 250 62 16 chr13 41532693 41532821 -60340348 + MER103 DNA DNA 21 154 -12 27 0 0 0 chr13 41532962 41532989 -60340180 + AT_rich Low_complexity Low_complexity 1 27 0 302 296 108 52 chr13 41533504 41533717 -60339452 + MLT1L LTR MaLR 306 530 -85 682 235 95 68 chr13 41534053 41534263 -60338906 + L1MD1 LINE L1 20 240 -6300 2108 113 10 3 chr13 41534263 41534573 -60338596 + AluSp SINE Alu 1 312 -1 682 235 95 68 chr13 41534573 41534626 -60338543 + L1MD1 LINE L1 240 290 -6250 * 1747 274 65 9 chr13 41534611 41535298 -60337871 + L1MD1 LINE L1 2598 3323 -3217 517 207 0 0 chr13 41535288 41535399 -60337770 + L1MD1 LINE L1 5780 5890 -746 * 431 157 56 45 chr13 41535435 41535509 -60337660 - Tigger7 DNA MER2_type -8 2479 2402 1523 206 68 54 chr13 41535509 41535936 -60337233 + Tigger2a DNA MER2_type 1 433 -1 431 157 56 45 chr13 41535936 41535950 -60337219 - Tigger7 DNA MER2_type -85 2402 2390 1098 231 86 4 chr13 41535962 41536205 -60336964 - Tigger7 DNA MER2_type -470 263 1 2983 198 47 23 chr13 41536205 41536892 -60336277 + L1MD1 LINE L1 5925 6627 -9 571 263 27 0 chr13 41537279 41537465 -60335704 - L1M4c LINE L1 -4188 2458 2268 3238 239 61 61 chr13 41537497 41539338 -60333831 - L1M4c LINE L1 -4481 2165 392 228 328 195 16 chr13 41539691 41539819 -60333350 - MIR SINE MIR -84 178 28 1747 149 127 0 chr13 41540366 41540674 -60332495 + MER7A DNA MER2_type 2 346 0 21 89 0 0 chr13 41541106 41541162 -60332007 + AT_rich Low_complexity Low_complexity 1 56 0 1119 182 37 37 chr13 41542611 41542710 -60330459 - AluJb SINE Alu -98 214 116 2048 122 55 50 chr13 41542710 41543072 -60330097 - THE1B LTR MaLR 0 364 1 11106 104 6 11 chr13 41543072 41544660 -60328509 - THE1B-int LTR MaLR 0 1580 1 1935 142 73 14 chr13 41544660 41545004 -60328165 - THE1B LTR MaLR 0 364 1 1119 182 37 37 chr13 41545004 41545116 -60328053 - AluJb SINE Alu -193 119 1 1048 276 23 46 chr13 41545414 41545765 -60327404 + L1MD3 LINE L1 6496 6846 -1149 21 36 0 0 chr13 41546147 41546175 -60326994 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 41546286 41546309 -60326860 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr13 41546542 41546574 -60326595 + AT_rich Low_complexity Low_complexity 1 32 0 181 275 62 25 chr13 41546612 41546692 -60326477 - MIR SINE MIR 0 262 180 5011 48 0 0 chr13 41546723 41547333 -60325836 - L1PA5 LINE L1 -3 6151 5542 548 45 0 0 chr13 41547333 41547399 -60325770 - L1P2 LINE L1 -555 5599 5534 208 343 149 15 chr13 41547402 41547536 -60325633 - MIR SINE MIR -108 154 3 257 329 18 18 chr13 41547754 41547924 -60325245 + MER41B LTR ERV1 260 429 -206 4424 200 21 19 chr13 41548181 41549580 -60323589 - L1MA7 LINE L1 0 6291 4888 324 355 76 10 chr13 41550273 41550470 -60322699 + MIR SINE MIR 6 215 -47 28 0 0 0 chr13 41553220 41553248 -60319921 + AT_rich Low_complexity Low_complexity 1 28 0 180 349 24 36 chr13 41553257 41553340 -60319829 - L2 LINE L2 -46 3267 3186 23 54 0 0 chr13 41553493 41553530 -60319639 + AT_rich Low_complexity Low_complexity 1 37 0 3468 160 23 33 chr13 41553564 41554270 -60318899 - L1PA3 LINE L1 -838 5308 4610 1019 111 8 3 chr13 41554268 41554445 -60318724 + L1PA3 LINE L1 5307 5490 -678 * 2177 18 0 0 chr13 41554443 41554814 -60318355 - L1P1 LINE L1 -658 5497 5127 5114 25 0 0 chr13 41554814 41555399 -60317770 + L1PA3 LINE L1 5563 6155 0 4565 109 27 0 chr13 41555401 41556073 -60317096 + L1PA10 LINE L1 5476 6165 -3 517 333 40 18 chr13 41556268 41556490 -60316679 + MIR SINE MIR 36 262 0 472 285 103 0 chr13 41557731 41557896 -60315273 + MIR SINE MIR 78 259 -3 1830 197 14 14 chr13 41558635 41559000 -60314169 + MLT1A1 LTR MaLR 1 365 0 210 233 0 0 chr13 41559141 41559184 -60313985 + CT-rich Low_complexity Low_complexity 1 43 0 201 225 0 0 chr13 41559183 41559223 -60313946 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 1273 145 149 14 chr13 41559249 41559531 -60313638 + MER4A LTR ERV1 1 320 -344 574 191 252 30 chr13 41559601 41559844 -60313325 + MER4C LTR ERV1 159 656 -8 1900 162 32 35 chr13 41560966 41561312 -60311857 - THE1B LTR MaLR -19 345 1 182 313 84 12 chr13 41561312 41561395 -60311774 + L2 LINE L2 3174 3262 -10 223 233 0 39 chr13 41561497 41561542 -60311627 + GA-rich Low_complexity Low_complexity 3 48 -53 655 194 0 16 chr13 41561542 41561666 -60311503 + FLAM_A SINE Alu 2 123 -10 223 233 0 39 chr13 41561666 41561723 -60311446 + GA-rich Low_complexity Low_complexity 48 101 0 2233 112 52 3 chr13 41564202 41564549 -60308620 - THE1B LTR MaLR 0 364 1 9804 131 40 10 chr13 41564549 41564716 -60308453 - THE1B-int LTR MaLR 0 1580 1419 1960 137 18 80 chr13 41564716 41565104 -60308065 - THE1B LTR MaLR 0 364 1 9804 131 40 10 chr13 41565104 41566469 -60306700 - THE1B-int LTR MaLR -161 1419 3 2554 88 17 11 chr13 41566476 41566828 -60306341 - THE1B LTR MaLR -10 354 1 312 274 27 0 chr13 41566946 41567019 -60306150 + MIR SINE MIR 69 143 -65 315 0 0 0 chr13 41567117 41567152 -60306017 + (CA)n Simple_repeat Simple_repeat 2 36 0 1343 194 17 36 chr13 41567292 41567729 -60305440 + L1M1 LINE L1 5071 5506 -744 23 54 0 0 chr13 41567932 41567969 -60305200 + AT_rich Low_complexity Low_complexity 1 37 0 384 91 0 0 chr13 41569159 41569214 -60303955 - MLT2A1 LTR ERVL 0 444 390 644 323 80 43 chr13 41569975 41570436 -60302733 - L2 LINE L2 -5 3308 2831 28 29 0 0 chr13 41571606 41571641 -60301528 + AT_rich Low_complexity Low_complexity 1 35 0 261 0 0 0 chr13 41572390 41572419 -60300750 + (TA)n Simple_repeat Simple_repeat 1 29 0 186 118 0 0 chr13 41572541 41572575 -60300594 + (TTA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr13 41572581 41572603 -60300566 + AT_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr13 41573155 41573209 -60299960 + AT_rich Low_complexity Low_complexity 1 54 0 328 316 107 12 chr13 41573244 41573412 -60299757 - MIR SINE MIR -74 188 5 255 356 88 42 chr13 41574138 41574354 -60298815 + MIR SINE MIR 1 226 -36 269 307 124 15 chr13 41574479 41574616 -60298553 + MLT1I LTR MaLR 207 358 -51 318 50 0 0 chr13 41575565 41575605 -60297564 + (TA)n Simple_repeat Simple_repeat 2 41 0 9875 179 26 49 chr13 41576057 41577901 -60295268 + L1MA5 LINE L1 3038 4923 -1377 2392 84 3 3 chr13 41577901 41578211 -60294958 - AluY SINE Alu -1 310 1 9875 179 26 49 chr13 41578211 41578391 -60294778 + L1MA5 LINE L1 4923 5106 -1194 4836 102 9 9 chr13 41578391 41579089 -60294080 + L1PA14 LINE L1 5462 6159 -2 9875 179 26 49 chr13 41579089 41579110 -60294059 + L1MA5 LINE L1 5106 5126 -1174 1963 129 7 0 chr13 41579110 41579388 -60293781 + AluSq SINE Alu 1 280 -33 9875 179 26 49 chr13 41579388 41580624 -60292545 + L1MA5 LINE L1 5126 6300 0 21 57 0 0 chr13 41582165 41582200 -60290969 + AT_rich Low_complexity Low_complexity 1 35 0 23 86 0 0 chr13 41582467 41582525 -60290644 + AT_rich Low_complexity Low_complexity 1 58 0 36 23 0 0 chr13 41582847 41582890 -60290279 + AT_rich Low_complexity Low_complexity 1 43 0 21 89 0 0 chr13 41582943 41582999 -60290170 + AT_rich Low_complexity Low_complexity 1 56 0 683 100 0 0 chr13 41583819 41583909 -60289260 + 5S rRNA rRNA 1 90 -31 950 64 0 0 chr13 41583935 41584060 -60289109 - AluY SINE Alu 0 311 187 7908 222 22 37 chr13 41584423 41586567 -60286602 - L1MC3 LINE L1 0 8065 5890 338 74 19 0 chr13 41586567 41586621 -60286548 + (TG)n Simple_repeat Simple_repeat 1 55 0 7908 222 22 37 chr13 41586621 41588088 -60285081 - L1MC3 LINE L1 -2175 5890 3060 282 246 0 0 chr13 41588093 41588150 -60285019 - L1MC3 LINE L1 -5797 629 573 2669 192 78 7 chr13 41588153 41588701 -60284468 - L1MC3 LINE L1 -5811 615 29 930 188 0 0 chr13 41589627 41589771 -60283398 - AluSg/x SINE Alu -24 286 143 1141 198 103 15 chr13 41589897 41590160 -60283009 - AluJo SINE Alu -16 286 1 411 254 79 61 chr13 41590246 41590525 -60282644 - HAL1 LINE L1 -110 2397 2114 273 271 79 28 chr13 41590657 41590871 -60282298 - HAL1 LINE L1 -1232 1275 1051 13996 92 7 1 chr13 41590919 41593655 -60279514 - L1PA7 LINE L1 -13 6141 3393 554 338 63 23 chr13 41593707 41594301 -60278868 - HAL1 LINE L1 -1467 1040 404 873 106 8 0 chr13 41597734 41597866 -60275303 + L1PA15 LINE L1 6026 6158 -7 3966 24 0 0 chr13 41598297 41598761 -60274408 - L1PA3 LINE L1 0 6155 5692 3154 19 0 0 chr13 41598761 41599122 -60274047 + L1PA3 LINE L1 5360 5720 -435 192 77 0 0 chr13 41600022 41600048 -60273121 + (A)n Simple_repeat Simple_repeat 1 26 0 27 87 0 0 chr13 41601362 41601431 -60271738 + AT_rich Low_complexity Low_complexity 1 69 0 2107 84 0 3 chr13 41601851 41602183 -60270986 - AluY SINE Alu 0 331 1 24 32 0 0 chr13 41602904 41602935 -60270234 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr13 41603251 41603293 -60269876 + AT_rich Low_complexity Low_complexity 1 42 0 2105 92 0 3 chr13 41603299 41603628 -60269541 + AluY SINE Alu 1 328 0 750 289 90 65 chr13 41603953 41604430 -60268739 - LTR16C LTR ERVL 0 491 3 255 297 127 8 chr13 41604719 41604837 -60268332 + MLT1I LTR MaLR 1 132 -277 22 0 0 0 chr13 41607106 41607128 -60266041 + AT_rich Low_complexity Low_complexity 1 22 0 203 298 0 0 chr13 41607250 41607297 -60265872 - L2 LINE L2 -9 3263 3217 241 347 145 8 chr13 41607454 41607702 -60265467 - L2 LINE L2 -6 3307 3026 21 0 0 0 chr13 41607977 41607998 -60265171 + AT_rich Low_complexity Low_complexity 1 21 0 2756 139 15 18 chr13 41608208 41608662 -60264507 + MER31A LTR ERV1 2 454 -31 1302 198 45 100 chr13 41608771 41609190 -60263979 + MER31A-int LTR ERV1 13 408 -4528 920 183 85 111 chr13 41609348 41609725 -60263444 + MER31A-int LTR ERV1 883 1249 -3687 716 167 8 24 chr13 41609728 41609854 -60263315 + FLAM_C SINE Alu 2 125 -8 524 209 57 82 chr13 41609880 41610162 -60263007 + MER31A-int LTR ERV1 1239 1513 -3423 285 263 36 51 chr13 41610300 41610437 -60262732 + LOR1-int LTR ERV1 1339 1473 -6647 1712 189 0 3 chr13 41610568 41610859 -60262310 + AluJb SINE Alu 1 290 -22 196 175 0 25 chr13 41610860 41610940 -60262229 + (TA)n Simple_repeat Simple_repeat 1 78 0 318 167 0 39 chr13 41610963 41611041 -60262128 + LOR1-int LTR ERV1 4201 4275 -3845 4001 164 21 28 chr13 41611045 41611800 -60261369 + Tigger2 DNA MER2_type 2 751 -1967 944 230 71 8 chr13 41611864 41612103 -60261066 + Tigger2 DNA MER2_type 2465 2718 0 9285 195 66 40 chr13 41612103 41614522 -60258647 + LOR1-int LTR ERV1 2406 4886 -50 1516 160 0 75 chr13 41616730 41617061 -60256108 - AluSx SINE Alu -6 306 1 207 146 0 0 chr13 41618826 41618867 -60254302 + (CA)n Simple_repeat Simple_repeat 2 42 0 549 255 28 7 chr13 41619306 41619451 -60253718 - MIR SINE MIR -6 256 109 5286 170 18 14 chr13 41619503 41621061 -60252108 + L1PBa LINE L1 1855 3540 -3322 2704 133 13 19 chr13 41621161 41621636 -60251533 - L1MA8 LINE L1 -226 6065 5594 1463 252 32 14 chr13 41621633 41622125 -60251044 + L1M4 LINE L1 4384 4884 -1262 * 8339 74 17 10 chr13 41622132 41623671 -60249498 + L1P3 LINE L1 4206 5754 -400 296 298 0 21 chr13 41624774 41624868 -60248301 + MER5A DNA MER1_type 76 167 -22 243 0 0 0 chr13 41626054 41626081 -60247088 + (T)n Simple_repeat Simple_repeat 1 27 0 7102 18 13 2 chr13 41626434 41627267 -60245902 - L1PA3 LINE L1 0 6155 5314 2619 23 0 0 chr13 41627518 41627823 -60245346 - L1P1 LINE L1 -458 5697 5393 3725 12 0 0 chr13 41627823 41628248 -60244921 + L1PA2 LINE L1 5731 6155 0 256 348 58 34 chr13 41628288 41628495 -60244674 + MIR SINE MIR 3 214 -48 1003 257 19 23 chr13 41629214 41629475 -60243694 - MIR SINE MIR 0 262 3 213 159 0 0 chr13 41630619 41630663 -60242506 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 203 62 16 chr13 41631940 41632004 -60241165 - MER5C DNA MER1_type -257 67 1 42 20 0 0 chr13 41632117 41632166 -60241003 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr13 41632922 41632945 -60240224 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2160 104 14 0 chr13 41632948 41633237 -60239932 - AluSc SINE Alu -16 293 1 1310 234 3 17 chr13 41634421 41634711 -60238458 + AluJo SINE Alu 1 286 -26 33 0 0 0 chr13 41635005 41635038 -60238131 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr13 41635177 41635205 -60237964 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 41635674 41635702 -60237467 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 41636710 41636739 -60236430 + AT_rich Low_complexity Low_complexity 1 29 0 295 160 66 38 chr13 41636848 41636954 -60236215 + L1ME1 LINE L1 5137 5245 -901 232 315 0 11 chr13 41636919 41637011 -60236158 - L1MC4 LINE L1 -1326 6716 6626 * 2677 251 59 14 chr13 41637006 41637874 -60235295 + L1ME1 LINE L1 5238 6147 -19 548 72 0 12 chr13 41638447 41638530 -60234639 + (TG)n Simple_repeat Simple_repeat 2 83 0 185 389 0 11 chr13 41640410 41640500 -60232669 - L2 LINE L2 -4 3268 3180 292 313 62 28 chr13 41643467 41643611 -60229558 - L2 LINE L2 -10 3303 3155 221 356 0 14 chr13 41644008 41644081 -60229088 + MIR SINE MIR 70 141 -67 325 283 50 10 chr13 41644085 41644184 -60228985 - L2 LINE L2 -8 3305 3203 23 92 0 0 chr13 41644197 41644262 -60228907 + AT_rich Low_complexity Low_complexity 1 65 0 252 289 36 12 chr13 41644489 41644572 -60228597 + L2 LINE L2 3221 3305 -8 23 0 0 0 chr13 41644650 41644673 -60228496 + AT_rich Low_complexity Low_complexity 1 23 0 1966 111 0 21 chr13 41645254 41645567 -60227602 + AluSx SINE Alu 2 308 0 219 320 13 0 chr13 41645622 41645697 -60227472 - MIR SINE MIR -65 143 68 183 80 0 0 chr13 41646771 41646796 -60226373 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1183 298 72 52 chr13 41646890 41647541 -60225628 + MER69 DNA AcHobo 31 694 -532 522 197 113 0 chr13 41647563 41647705 -60225464 + MER69 DNA AcHobo 1651 1808 -718 1136 184 26 85 chr13 41647705 41648010 -60225159 + L1MA10 LINE L1 6048 6334 0 272 305 61 0 chr13 41648094 41648225 -60224944 + MER69 DNA AcHobo 1881 2019 -507 2516 128 46 14 chr13 41648272 41648687 -60224482 + MSTA LTR MaLR 1 428 0 8558 175 37 12 chr13 41648687 41650298 -60222871 + MSTA-int LTR MaLR 1 1651 0 2394 142 37 17 chr13 41650298 41650707 -60222462 + MSTA LTR MaLR 1 417 -11 21 0 0 0 chr13 41650803 41650824 -60222345 + AT_rich Low_complexity Low_complexity 1 21 0 243 343 19 19 chr13 41650927 41651035 -60222134 + L3 LINE CR1 1465 1572 -5 27 0 0 0 chr13 41651122 41651149 -60222020 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr13 41652536 41652561 -60220608 + AT_rich Low_complexity Low_complexity 1 25 0 24 39 0 0 chr13 41653599 41653625 -60219544 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr13 41653948 41653983 -60219186 + AT_rich Low_complexity Low_complexity 1 35 0 220 211 0 42 chr13 41655333 41655404 -60217765 + T-rich Low_complexity Low_complexity 2 69 0 31 0 0 0 chr13 41657439 41657470 -60215699 + AT_rich Low_complexity Low_complexity 1 31 0 193 350 90 23 chr13 41657622 41657799 -60215370 - MIR SINE MIR -59 203 15 644 204 0 8 chr13 41659275 41659407 -60213762 - FRAM SINE Alu -8 168 38 29 70 0 0 chr13 41660201 41660258 -60212911 + AT_rich Low_complexity Low_complexity 1 57 0 948 286 62 80 chr13 41660548 41660704 -60212465 - L1ME3A LINE L1 -6 6164 6007 2029 120 3 20 chr13 41660704 41661004 -60212165 + AluSx SINE Alu 3 297 -15 948 286 62 80 chr13 41661004 41661322 -60211847 - L1ME3A LINE L1 -163 6007 5705 2166 118 40 37 chr13 41661322 41661696 -60211473 + THE1C LTR MaLR 1 375 0 948 286 62 80 chr13 41661696 41661973 -60211196 - L1ME3A LINE L1 -465 5705 5425 641 312 72 18 chr13 41661952 41662509 -60210660 - L1ME3A LINE L1 -1023 5123 4537 * 390 260 59 29 chr13 41662615 41662819 -60210350 - L1ME3A LINE L1 -1787 4359 4150 351 328 27 21 chr13 41662853 41663039 -60210130 - L1ME3A LINE L1 -1983 4163 3977 741 283 88 39 chr13 41663050 41663724 -60209445 - L1ME3A LINE L1 -2292 3854 3148 1315 332 61 34 chr13 41663760 41664564 -60208605 + HERV16 LTR ERVL 2296 3085 -1911 978 348 68 45 chr13 41664695 41665669 -60207500 + HERV16 LTR ERVL 3282 4277 -1487 500 341 59 44 chr13 41665645 41666035 -60207134 + HERV16 LTR ERVL 4448 4843 -921 * 304 206 0 16 chr13 41666201 41666264 -60206905 + HERV16 LTR ERVL 4618 4679 -317 268 364 86 21 chr13 41666569 41666860 -60206309 + LTR16A LTR ERVL 1 310 -140 1385 172 13 110 chr13 41667309 41667548 -60205621 - MLT1A2 LTR MaLR 0 374 186 1403 184 0 83 chr13 41667548 41667875 -60205294 - AluJo SINE Alu -12 300 1 1385 172 13 110 chr13 41667875 41668025 -60205144 - MLT1A2 LTR MaLR -188 186 23 636 265 85 83 chr13 41668271 41668811 -60204358 - HAL1 LINE L1 -207 2300 1760 242 305 0 12 chr13 41668831 41668913 -60204256 - MLT-int LTR MaLR -1634 101 21 1458 92 10 5 chr13 41669161 41669367 -60203802 + AluY SINE Alu 4 210 -101 879 209 0 104 chr13 41669467 41669716 -60203453 - AluJo SINE Alu -88 224 2 716 167 13 47 chr13 41669717 41669867 -60203302 - MLT1A2 LTR MaLR -207 167 23 636 265 85 83 chr13 41670113 41670653 -60202516 - HAL1 LINE L1 -207 2300 1760 242 305 0 12 chr13 41670673 41670755 -60202414 - MLT-int LTR MaLR -1634 101 21 2237 61 31 3 chr13 41671004 41671298 -60201871 + AluY SINE Alu 4 305 -6 2385 132 52 8 chr13 41671427 41671829 -60201340 + MSTA LTR MaLR 1 420 -8 437 299 129 14 chr13 41672162 41672379 -60200790 - MIR SINE MIR -1 261 20 334 319 42 58 chr13 41674099 41674290 -60198879 + LTR16A LTR ERVL 1 188 -262 236 319 54 36 chr13 41674774 41674940 -60198229 + MIR SINE MIR 81 249 -13 231 351 75 0 chr13 41676385 41676479 -60196690 - MIR SINE MIR -137 125 25 775 168 5 76 chr13 41676978 41677175 -60195994 - L1MA9 LINE L1 -10 6302 6120 1093 215 0 12 chr13 41677179 41677421 -60195748 + L1MA9 LINE L1 5880 6118 -194 261 274 49 20 chr13 41677921 41678023 -60195146 + HAL1b LINE L1 591 695 -653 229 254 0 17 chr13 41678029 41678088 -60195081 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 363 285 110 62 chr13 41678229 41678601 -60194568 + HAL1b LINE L1 890 1279 -69 745 107 36 0 chr13 41678617 41678729 -60194440 + FLAM_C SINE Alu 1 116 -17 29 47 0 0 chr13 41678761 41678804 -60194365 + AT_rich Low_complexity Low_complexity 1 43 0 378 292 17 8 chr13 41679168 41679288 -60193881 - L2 LINE L2 -1 3312 3192 2000 179 26 88 chr13 41680800 41681346 -60191823 + MER67D LTR ERV1 3 514 0 240 179 39 0 chr13 41682261 41682339 -60190830 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 77 0 0 chr13 41682448 41682500 -60190669 + AT_rich Low_complexity Low_complexity 1 52 0 270 336 96 8 chr13 41683445 41683570 -60189599 - MIR SINE MIR -120 142 7 247 293 42 54 chr13 41684710 41684877 -60188292 - L2 LINE L2 -12 3301 3137 2725 182 66 40 chr13 41687626 41687978 -60185191 + L1MA7 LINE L1 5593 5934 -357 2012 123 7 0 chr13 41687978 41688270 -60184899 + AluSp SINE Alu 1 294 -19 2725 182 66 40 chr13 41688270 41688598 -60184571 + L1MA7 LINE L1 5934 6291 0 1875 251 64 48 chr13 41688587 41689405 -60183764 + L1ME1 LINE L1 5173 6001 -165 * 391 149 126 23 chr13 41689506 41689563 -60183606 - L1MA10 LINE L1 -110 6224 6154 360 0 0 0 chr13 41689563 41689603 -60183566 + (TG)n Simple_repeat Simple_repeat 1 40 0 391 149 126 23 chr13 41689603 41689632 -60183537 - L1MA10 LINE L1 -180 6154 6129 793 440 43 36 chr13 41689640 41690033 -60183136 - L1MB1 LINE L1 -114 6075 5680 * 1149 155 163 16 chr13 41690015 41690273 -60182896 + L1MB1 LINE L1 5412 5707 -627 507 229 15 8 chr13 41690272 41690403 -60182766 + L1MA10 LINE L1 6201 6332 -2 * 980 255 36 6 chr13 41690428 41690757 -60182412 - L1M4 LINE L1 -2994 3152 2814 344 261 91 42 chr13 41690784 41690949 -60182220 - L1MCc LINE L1 -6107 316 144 203 228 35 0 chr13 41692504 41692561 -60180608 - MIR SINE MIR -37 225 167 565 216 11 74 chr13 41692561 41692737 -60180432 + MER104 DNA Tc2 1 165 -15 180 360 13 0 chr13 41692787 41692862 -60180307 - MIR SINE MIR -147 115 40 29 47 0 0 chr13 41693348 41693391 -60179778 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr13 41693414 41693437 -60179732 + AT_rich Low_complexity Low_complexity 1 23 0 484 316 47 117 chr13 41693439 41693825 -60179344 - L2 LINE L2 -2 3270 2912 2393 99 65 8 chr13 41694671 41695026 -60178143 + THE1C LTR MaLR 1 375 0 738 53 0 0 chr13 41695106 41695201 -60177968 - L1PA5 LINE L1 -332 5822 5728 2604 47 0 0 chr13 41695203 41695521 -60177648 + L1PA5 LINE L1 5824 6141 -13 234 0 0 0 chr13 41695524 41695550 -60177619 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 215 100 0 25 chr13 41695767 41695807 -60177362 + (TTAG)n Simple_repeat Simple_repeat 2 40 0 1404 264 98 0 chr13 41695949 41696355 -60176814 - L1MEc LINE L1 -5524 872 427 739 267 116 12 chr13 41696357 41696615 -60176554 - L1MEc LINE L1 -6019 377 93 182 385 115 0 chr13 41696698 41696880 -60176289 - L2 LINE L2 -591 2723 2521 180 0 0 0 chr13 41697515 41697535 -60175634 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 34 42 0 0 chr13 41697983 41698031 -60175138 + AT_rich Low_complexity Low_complexity 1 48 0 24 32 0 0 chr13 41698110 41698141 -60175028 + AT_rich Low_complexity Low_complexity 1 31 0 766 315 48 15 chr13 41698676 41699070 -60174099 + MER20B DNA MER1_type 183 589 -194 800 217 0 0 chr13 41699078 41699235 -60173934 + AluJb SINE Alu 145 301 -11 473 246 28 28 chr13 41699235 41699377 -60173792 + MER20B DNA MER1_type 606 747 -36 708 215 28 11 chr13 41699466 41699643 -60173526 - MER3 DNA MER1_type -6 203 24 12688 219 23 18 chr13 41699765 41704357 -60168812 - L1PA16 LINE L1 0 6869 2292 2636 135 73 8 chr13 41704357 41704837 -60168332 - MER9 LTR ERVK 0 511 1 12688 219 23 18 chr13 41704837 41706423 -60166746 - L1PA16 LINE L1 -4577 2292 715 1055 159 36 67 chr13 41706499 41707136 -60166033 + L1MA4 LINE L1 5254 6291 -5 1055 188 42 0 chr13 41707136 41707375 -60165794 + L1MA4 LINE L1 6047 6295 -5 39 0 0 0 chr13 41707878 41707917 -60165252 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr13 41707971 41708007 -60165162 + AT_rich Low_complexity Low_complexity 1 36 0 326 346 44 13 chr13 41708114 41708342 -60164827 + L1ME4a LINE L1 4802 5036 -1110 23 0 0 0 chr13 41708477 41708500 -60164669 + AT_rich Low_complexity Low_complexity 1 23 0 338 193 134 1 chr13 41708573 41708703 -60164466 + L1ME4a LINE L1 5315 5464 -719 361 339 111 33 chr13 41708762 41709187 -60163982 + L1ME4a LINE L1 5517 5974 -147 22 70 0 0 chr13 41709367 41709410 -60163759 + AT_rich Low_complexity Low_complexity 1 43 0 257 266 73 16 chr13 41709742 41709866 -60163303 + L3 LINE CR1 1148 1278 -299 24 32 0 0 chr13 41710807 41710838 -60162331 + AT_rich Low_complexity Low_complexity 1 31 0 280 316 53 26 chr13 41711229 41711343 -60161826 + L2 LINE L2 3187 3303 -10 277 141 0 26 chr13 41711414 41711492 -60161677 + (TA)n Simple_repeat Simple_repeat 2 77 0 31 58 0 0 chr13 41711531 41711583 -60161586 + AT_rich Low_complexity Low_complexity 1 52 0 354 357 62 39 chr13 41712370 41712776 -60160393 + L2 LINE L2 2437 2851 -463 679 161 0 7 chr13 41712811 41712954 -60160215 - AluSc SINE Alu -16 293 152 2277 228 60 60 chr13 41713061 41713291 -60159878 + L1MD2 LINE L1 5642 5871 -488 1365 210 17 28 chr13 41713291 41713582 -60159587 + AluJo SINE Alu 2 289 -23 2277 228 60 60 chr13 41713582 41714057 -60159112 + L1MD2 LINE L1 5870 6347 -12 1727 254 66 41 chr13 41714199 41715055 -60158114 - L1M4 LINE L1 -2229 3917 3035 2665 184 12 0 chr13 41715055 41715543 -60157626 - L1PA16 LINE L1 0 6166 5673 1937 223 32 2 chr13 41715543 41715974 -60157195 + L1P LINE L1 4025 4468 -1678 739 143 0 50 chr13 41716467 41716649 -60156520 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 205 235 0 31 chr13 41716658 41716756 -60156413 + CT-rich Low_complexity Low_complexity 2 96 0 1777 190 44 3 chr13 41717311 41717700 -60155469 - L1MC3 LINE L1 -11 7774 7370 517 297 55 16 chr13 41717725 41717907 -60155262 + MIR SINE MIR 17 205 -57 221 222 0 28 chr13 41718004 41718076 -60155093 + A-rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 41718188 41718209 -60154960 + AT_rich Low_complexity Low_complexity 1 21 0 429 275 0 11 chr13 41718237 41718365 -60154804 + L1MC/D LINE L1 5496 5617 -683 920 211 14 9 chr13 41718467 41718680 -60154489 + L1MC3 LINE L1 6945 7158 -627 2273 87 0 6 chr13 41719377 41719688 -60153481 + AluY SINE Alu 1 309 -2 661 324 125 19 chr13 41719695 41720216 -60152953 - L2 LINE L2 -1724 1590 1015 724 325 22 0 chr13 41720382 41720613 -60152556 + L2 LINE L2 2560 2795 -519 898 215 16 0 chr13 41720737 41720923 -60152246 + MER5A DNA MER1_type 1 189 0 449 299 12 30 chr13 41721059 41721223 -60151946 + L2 LINE L2 3153 3313 0 754 186 7 7 chr13 41721825 41721965 -60151204 + AluSx SINE Alu 39 178 -134 195 252 27 0 chr13 41722080 41722191 -60150978 + (TA)n Simple_repeat Simple_repeat 2 115 0 211 264 121 22 chr13 41722467 41722558 -60150611 + L3 LINE CR1 1467 1566 -11 192 295 135 26 chr13 41722663 41722819 -60150350 - L2 LINE L2 -8 3305 3133 25 31 0 0 chr13 41723188 41723220 -60149949 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr13 41725861 41725895 -60147274 + AT_rich Low_complexity Low_complexity 1 34 0 749 256 85 52 chr13 41726175 41726480 -60146689 - L1ME1 LINE L1 -1 6165 5851 304 224 82 10 chr13 41726489 41726587 -60146582 + MLT1C LTR MaLR 3 107 -398 686 249 43 5 chr13 41726612 41726797 -60146372 + MLT1C LTR MaLR 276 467 0 1114 230 101 68 chr13 41726812 41727316 -60145853 - L1ME1 LINE L1 -341 5825 5305 1652 220 68 19 chr13 41727327 41727563 -60145606 - MLT1C LTR MaLR -4 463 240 189 0 0 0 chr13 41727563 41727584 -60145585 + (TG)n Simple_repeat Simple_repeat 2 22 0 1652 220 68 19 chr13 41727584 41727604 -60145565 - MLT1C LTR MaLR -227 240 222 2384 61 0 6 chr13 41727604 41727915 -60145254 - AluY SINE Alu -2 309 1 1652 220 68 19 chr13 41727915 41728085 -60145084 - MLT1C LTR MaLR -245 222 15 23 33 0 0 chr13 41728326 41728356 -60144813 + AT_rich Low_complexity Low_complexity 1 30 0 357 373 15 0 chr13 41728449 41728583 -60144586 - L2 LINE L2 -1333 1981 1846 2061 228 53 53 chr13 41729171 41730616 -60142553 + L1MC/D LINE L1 4282 5715 -527 2000 134 6 27 chr13 41732497 41732862 -60140307 - L1PA10 LINE L1 -1 6482 6126 23272 183 33 39 chr13 41732962 41737518 -60135651 - L1PA10 LINE L1 -666 5817 1328 2769 79 0 0 chr13 41737518 41737871 -60135298 - THE1A LTR MaLR -2 353 1 23272 183 33 39 chr13 41737871 41739184 -60133985 - L1PA10 LINE L1 -5155 1328 8 196 316 35 0 chr13 41740480 41740537 -60132632 - L2 LINE L2 -5 3267 3209 258 268 37 37 chr13 41740889 41740971 -60132198 - L3 LINE CR1 -1 1576 1495 205 300 171 76 chr13 41741313 41741523 -60131646 - L3 LINE CR1 -833 744 515 258 286 0 0 chr13 41742200 41742270 -60130899 + (CA)n Simple_repeat Simple_repeat 2 71 0 2071 169 28 3 chr13 41743112 41743467 -60129702 + THE1B LTR MaLR 1 364 0 10060 110 26 36 chr13 41743467 41745064 -60128105 + THE1B-int LTR MaLR 1 1580 0 2297 124 28 6 chr13 41745064 41745420 -60127749 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr13 41745652 41745673 -60127496 + AT_rich Low_complexity Low_complexity 1 21 0 2289 105 73 14 chr13 41746250 41746594 -60126575 + THE1B LTR MaLR 1 364 0 10513 103 43 11 chr13 41746594 41747393 -60125776 + THE1B-int LTR MaLR 1 772 -808 2313 103 0 3 chr13 41747393 41747705 -60125464 + AluSp SINE Alu 1 311 -2 10513 103 43 11 chr13 41747705 41748435 -60124734 + THE1B-int LTR MaLR 772 1580 0 1983 145 73 14 chr13 41748435 41748779 -60124390 + THE1B LTR MaLR 1 364 0 355 272 204 14 chr13 41750504 41750651 -60122518 - MER5B DNA MER1_type 0 178 4 23 0 0 0 chr13 41751078 41751101 -60122068 + AT_rich Low_complexity Low_complexity 1 23 0 445 145 211 40 chr13 41751109 41751261 -60121908 - L1MC3 LINE L1 -8 7777 7600 37 23 0 0 chr13 41752809 41752853 -60120316 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr13 41753435 41753461 -60119708 + AT_rich Low_complexity Low_complexity 1 26 0 773 179 65 0 chr13 41753962 41754146 -60119023 + L1MA8 LINE L1 6094 6289 -2 21 0 0 0 chr13 41754149 41754170 -60118999 + AT_rich Low_complexity Low_complexity 1 21 0 239 286 48 0 chr13 41754547 41754631 -60118538 - L1MC/D LINE L1 -2300 5508 5421 2363 214 41 7 chr13 41754901 41755363 -60117806 + LTR42 LTR ERVL 18 495 0 27 73 0 0 chr13 41756679 41756734 -60116435 + AT_rich Low_complexity Low_complexity 1 55 0 318 365 13 19 chr13 41756980 41757136 -60116033 - MIR SINE MIR 0 262 108 216 285 8 65 chr13 41757200 41757323 -60115846 + MIR SINE MIR 147 262 0 866 188 36 21 chr13 41808809 41809001 -60064168 - LOR1b LTR ERV1 -266 195 1 993 173 140 0 chr13 41809103 41809271 -60063898 + MER1A DNA MER1_type 1 197 -332 3362 128 242 6 chr13 41809271 41809936 -60063233 - LTR12 LTR ERV1 0 826 5 2429 175 13 23 chr13 41809950 41810555 -60062614 - pTR5 LTR ERV1 -1092 1346 748 2325 111 15 9 chr13 41810555 41810898 -60062271 + MER1A DNA MER1_type 185 529 0 835 211 91 43 chr13 41811102 41811311 -60061858 + MER20 DNA MER1_type 1 219 0 5763 175 28 26 chr13 41811523 41813524 -60059645 - L1 LINE L1 -2772 4793 2734 410 39 0 0 chr13 41813524 41813576 -60059593 + MADE1 DNA Mariner 1 52 -28 5763 175 28 26 chr13 41813576 41813759 -60059410 - L1 LINE L1 -4831 2734 2553 231 323 15 0 chr13 41815506 41815571 -60057598 + LTR67 LTR ERVL 113 178 -379 246 314 81 17 chr13 41815715 41815887 -60057282 + LTR67 LTR ERVL 353 535 -22 21 71 0 0 chr13 41817923 41817965 -60055204 + AT_rich Low_complexity Low_complexity 1 42 0 186 71 0 0 chr13 41818032 41818060 -60055109 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr13 41818551 41818572 -60054597 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 41819367 41819399 -60053770 + AT_rich Low_complexity Low_complexity 1 32 0 369 0 0 0 chr13 41819496 41819537 -60053632 + (TA)n Simple_repeat Simple_repeat 1 41 0 365 280 154 28 chr13 41821483 41821626 -60051543 - MER5B DNA MER1_type -1 177 17 18455 56 1 0 chr13 41822972 41825269 -60047900 - L1P LINE L1 -3838 2308 10 7122 25 1 0 chr13 41825269 41826109 -60047060 + L1PA4 LINE L1 5315 6155 0 1544 148 13 0 chr13 41826305 41826568 -60046601 - AluSx SINE Alu 0 315 50 22 35 0 0 chr13 41826696 41826725 -60046444 + AT_rich Low_complexity Low_complexity 1 29 0 1916 91 60 0 chr13 41826992 41827290 -60045879 - L1PA8 LINE L1 -3 6169 5854 2154 201 31 2 chr13 41827326 41827740 -60045429 + MSTB LTR MaLR 1 426 0 6830 57 16 1 chr13 41828184 41829550 -60043619 + L1PA7 LINE L1 4790 6141 -13 279 335 28 63 chr13 41829888 41829981 -60043188 + L2 LINE L2 2378 2473 -841 2317 71 0 14 chr13 41829981 41830275 -60042894 - AluY SINE Alu -21 290 1 279 335 28 63 chr13 41830275 41830435 -60042734 + L2 LINE L2 2473 2622 -692 185 296 0 128 chr13 41831108 41831233 -60041936 - MIR SINE MIR -70 192 84 290 299 82 22 chr13 41832229 41832363 -60040806 + MER117 DNA MER1_type 30 171 -26 4040 138 12 3 chr13 41832570 41833214 -60039955 + L1PA15 LINE L1 5513 6162 -3 594 334 71 30 chr13 41833505 41833972 -60039197 - LTR16C LTR ERVL -2 489 4 308 24 0 24 chr13 41835690 41835732 -60037437 + (TAA)n Simple_repeat Simple_repeat 2 42 0 500 373 28 0 chr13 41835732 41835984 -60037185 - MIR SINE MIR -3 259 1 687 282 151 28 chr13 41836923 41837464 -60035705 - MLT1G1 LTR MaLR 0 590 4 23 0 0 0 chr13 41837551 41837574 -60035595 + AT_rich Low_complexity Low_complexity 1 23 0 274 351 20 0 chr13 41839672 41839823 -60033346 + GA-rich Low_complexity Low_complexity 2 155 0 280 291 24 92 chr13 41839906 41840112 -60033057 - MLT1L LTR MaLR -421 194 3 183 388 33 40 chr13 41840461 41840613 -60032556 - L2 LINE L2 0 3272 3122 347 342 19 32 chr13 41841403 41841558 -60031611 + MIR3 SINE MIR 42 194 -14 407 300 95 21 chr13 41841739 41841929 -60031240 - MIR SINE MIR -18 244 41 2431 55 3 0 chr13 41845364 41845657 -60027512 + AluY SINE Alu 1 294 -17 180 417 34 5 chr13 41846067 41846271 -60026898 - MIR SINE MIR -6 256 47 189 213 0 0 chr13 41846532 41846579 -60026590 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 2166 81 32 0 chr13 41847927 41848212 -60024957 + AluSq SINE Alu 3 296 -17 304 265 6 43 chr13 41850613 41850775 -60022394 + HAL1b LINE L1 618 773 -575 248 269 115 67 chr13 41850783 41850991 -60022178 + HAL1b LINE L1 830 1047 -301 314 283 145 30 chr13 41851073 41851239 -60021930 + HAL1b LINE L1 1164 1348 0 37 62 0 0 chr13 41851376 41851441 -60021728 + AT_rich Low_complexity Low_complexity 1 65 0 25 0 0 0 chr13 41853611 41853636 -60019533 + AT_rich Low_complexity Low_complexity 1 25 0 41 36 0 0 chr13 41854218 41854273 -60018896 + AT_rich Low_complexity Low_complexity 1 55 0 343 208 0 120 chr13 41855840 41855965 -60017204 - L1ME LINE L1 -609 5561 5452 460 312 72 52 chr13 41855986 41856601 -60016568 - L1ME LINE L1 -758 5388 4762 401 306 65 34 chr13 41856683 41857065 -60016104 - L1ME LINE L1 -1880 4266 3873 899 276 119 30 chr13 41857206 41857775 -60015394 - L1ME LINE L1 -2760 3386 2712 1999 102 6 50 chr13 41857775 41858053 -60015116 + AluSg SINE Alu 1 265 -45 291 28 0 0 chr13 41858053 41858089 -60015080 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1999 102 6 50 chr13 41858089 41858132 -60015037 + AluSg SINE Alu 265 308 -2 899 276 119 30 chr13 41858132 41858430 -60014739 - L1ME LINE L1 -3434 2712 2442 708 158 68 0 chr13 41858570 41858716 -60014453 + L1MA9 LINE L1 5154 5309 -837 2119 163 18 5 chr13 41858816 41859202 -60013967 + L1MA9 LINE L1 5305 5695 -596 1896 139 18 15 chr13 41859204 41859541 -60013628 + L1MA8 LINE L1 5946 6283 -8 22 0 0 0 chr13 41859542 41859564 -60013605 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 41859999 41860022 -60013147 + (TA)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr13 41860049 41860076 -60013093 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 41860206 41860229 -60012940 + AT_rich Low_complexity Low_complexity 1 23 0 2152 114 7 0 chr13 41860234 41860532 -60012637 - AluSx SINE Alu -12 300 1 503 282 161 21 chr13 41860550 41861071 -60012098 - L1MEc LINE L1 -1299 5083 4490 1362 165 23 38 chr13 41861100 41861366 -60011803 - AluJo SINE Alu -48 264 3 1327 292 39 45 chr13 41861369 41862160 -60011009 - L1MEc LINE L1 -1886 4496 3711 797 269 206 21 chr13 41862230 41862855 -60010314 - L1MEc LINE L1 -2956 3426 2686 2370 163 19 37 chr13 41862869 41863353 -60009816 + L1MA9 LINE L1 5823 6297 -15 2027 110 9 31 chr13 41863444 41863763 -60009406 - AluSx SINE Alu 0 312 1 575 124 41 0 chr13 41863879 41863976 -60009193 - AluS SINE Alu -212 101 1 488 233 75 39 chr13 41864003 41864259 -60008910 - L1MEc LINE L1 -3795 2587 2329 343 349 56 24 chr13 41864387 41864762 -60008407 - L1MEc LINE L1 -5918 645 259 431 269 63 62 chr13 41865202 41865599 -60007570 - L1MDb LINE L1 -4712 1549 1091 399 278 86 66 chr13 41865799 41866148 -60007021 - L1MDb LINE L1 -5165 905 550 196 308 19 0 chr13 41869524 41869576 -60003593 - L3 LINE CR1 -1 1576 1524 189 367 78 0 chr13 41870045 41870135 -60003034 - L2 LINE L2 -48 3265 3169 2901 207 61 19 chr13 41870984 41871671 -60001498 - LTR28 LTR ERV1 -304 716 1 183 329 0 14 chr13 41872078 41872151 -60001018 - L2 LINE L2 -1437 1877 1806 344 307 20 0 chr13 41872156 41872257 -60000912 + L2 LINE L2 3160 3262 -10 196 349 105 0 chr13 41872285 41872371 -60000798 - L2 LINE L2 -1522 1792 1698 184 394 81 0 chr13 41873560 41873659 -59999510 - L2 LINE L2 -22 3250 3144 7518 197 12 7 chr13 41875230 41877737 -59995432 - L1PB4 LINE L1 0 6156 3637 246 227 0 82 chr13 41878045 41878142 -59995027 + MER67C LTR ERV1 1 89 -425 1273 143 0 158 chr13 41878179 41878514 -59994655 - AluJb SINE Alu -19 283 2 812 228 205 48 chr13 41878515 41878949 -59994220 + MER67C LTR ERV1 72 510 -4 494 193 29 14 chr13 41879038 41879178 -59993991 + L1M4 LINE L1 4980 5121 -1025 1932 192 0 11 chr13 41879562 41879931 -59993238 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr13 41880962 41880982 -59992187 + (TGG)n Simple_repeat Simple_repeat 1 20 0 32 67 0 0 chr13 41881768 41881828 -59991341 + AT_rich Low_complexity Low_complexity 1 60 0 3204 219 211 65 chr13 41882054 41882839 -59990330 + L1MDa LINE L1 22 691 -5849 1584 194 92 6 chr13 41882839 41883175 -59989994 + MLT1A1 LTR MaLR 1 365 0 3204 219 211 65 chr13 41883175 41883490 -59989679 + L1MDa LINE L1 691 959 -5581 180 77 0 0 chr13 41883490 41883516 -59989653 + (TG)n Simple_repeat Simple_repeat 2 27 0 3204 219 211 65 chr13 41883516 41883809 -59989360 + L1MDa LINE L1 959 1619 -4921 228 348 9 0 chr13 41884029 41884141 -59989028 + L1M4 LINE L1 88 200 -6342 4738 237 45 37 chr13 41884202 41886302 -59986867 + L1M4 LINE L1 4154 6267 -415 23 33 0 0 chr13 41886555 41886585 -59986584 + AT_rich Low_complexity Low_complexity 1 30 0 387 280 80 47 chr13 41887214 41887364 -59985805 + MIR3 SINE MIR 42 196 -12 225 132 0 0 chr13 41888795 41888833 -59984336 + (T)n Simple_repeat Simple_repeat 1 38 0 757 222 28 0 chr13 41890283 41890459 -59982710 + MLT2D LTR ERVL 234 414 0 44 46 0 0 chr13 41890620 41890685 -59982484 + AT_rich Low_complexity Low_complexity 1 65 0 243 368 60 8 chr13 41893605 41893722 -59979447 + MIR SINE MIR 7 129 -133 21 36 0 0 chr13 41893802 41893830 -59979339 + AT_rich Low_complexity Low_complexity 1 28 0 195 354 0 0 chr13 41893937 41893985 -59979184 + L2 LINE L2 3214 3261 -11 422 356 7 0 chr13 41894303 41894452 -59978717 - MER5B DNA MER1_type -16 162 13 254 265 174 0 chr13 41894547 41894645 -59978524 - L3 LINE CR1 -108 1469 1355 272 186 0 17 chr13 41894996 41895055 -59978114 - MLT1F1 LTR MaLR 0 567 510 974 258 49 28 chr13 41895130 41895417 -59977752 - MLT1F1 LTR MaLR -273 294 2 256 338 94 6 chr13 41895498 41895658 -59977511 - L3 LINE CR1 -805 772 599 2176 97 28 0 chr13 41895746 41896036 -59977133 - AluSx SINE Alu -14 298 1 330 26 0 0 chr13 41896869 41896908 -59976261 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr13 41896979 41897000 -59976169 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 41898149 41898171 -59974998 + AT_rich Low_complexity Low_complexity 1 22 0 424 281 87 35 chr13 41898356 41898678 -59974491 - L1ME LINE L1 -335 5786 5471 233 270 16 0 chr13 41900569 41900632 -59972537 + (TA)n Simple_repeat Simple_repeat 1 64 0 1303 188 23 0 chr13 41903350 41903611 -59969558 + L1MC2 LINE L1 6064 6330 -14 733 320 24 129 chr13 41903714 41904033 -59969136 - AluYb8 SINE Alu 0 318 40 22 35 0 0 chr13 41904121 41904150 -59969019 + AT_rich Low_complexity Low_complexity 1 29 0 450 170 116 0 chr13 41904153 41904265 -59968904 + L1MA9 LINE L1 6188 6312 0 23 0 0 0 chr13 41904373 41904396 -59968773 + AT_rich Low_complexity Low_complexity 1 23 0 288 303 18 23 chr13 41904889 41905016 -59968153 + MER5A DNA MER1_type 11 138 -40 436 152 305 0 chr13 41905039 41905144 -59968025 + MER1B DNA MER1_type 1 137 -160 402 158 171 0 chr13 41905139 41905221 -59967948 + MER1B DNA MER1_type 42 137 -160 * 1581 133 96 35 chr13 41905216 41905562 -59967607 + MER1B DNA MER1_type 42 339 0 183 42 0 0 chr13 41905639 41905663 -59967506 + (TG)n Simple_repeat Simple_repeat 2 25 0 432 309 12 19 chr13 41908055 41908217 -59964952 - L3b LINE CR1 -318 1265 1105 1932 148 0 20 chr13 41909641 41909945 -59963224 + AluSx SINE Alu 1 298 -14 25 51 0 0 chr13 41911363 41911402 -59961767 + AT_rich Low_complexity Low_complexity 1 39 0 670 173 13 53 chr13 41911746 41911896 -59961273 + MLT1A1 LTR MaLR 37 180 -185 1828 142 42 0 chr13 41912200 41912488 -59960681 - AluSx SINE Alu -11 301 2 1241 85 65 10 chr13 41912982 41913183 -59959986 - L1MA1 LINE L1 0 6302 6091 9072 147 9 47 chr13 41913283 41915722 -59957447 - L1MA1 LINE L1 -438 5864 3523 22 35 0 0 chr13 41916105 41916134 -59957035 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 41917560 41917581 -59955588 + AT_rich Low_complexity Low_complexity 1 21 0 207 333 65 54 chr13 41917889 41918057 -59955112 + MIR SINE MIR 47 216 -46 21 57 0 0 chr13 41918439 41918474 -59954695 + AT_rich Low_complexity Low_complexity 1 35 0 212 0 0 35 chr13 41918969 41918998 -59954171 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2080 90 0 33 chr13 41919010 41919311 -59953858 - AluY SINE Alu -17 294 4 2481 247 85 26 chr13 41919497 41920083 -59953086 - L1MB7 LINE L1 -9 6175 5523 6968 47 15 1 chr13 41920083 41921449 -59951720 + L1PA7 LINE L1 4765 6152 -2 2481 247 85 26 chr13 41921449 41921842 -59951327 - L1MB7 LINE L1 -661 5523 5155 22 80 0 0 chr13 41921849 41921899 -59951270 + AT_rich Low_complexity Low_complexity 1 50 0 47 33 0 0 chr13 41922057 41922118 -59951051 + AT_rich Low_complexity Low_complexity 1 61 0 740 331 101 4 chr13 41922593 41922871 -59950298 - MLT2E LTR ERVL -223 405 101 430 344 84 0 chr13 41923147 41923420 -59949749 + L1ME LINE L1 5490 5785 -336 2503 145 84 9 chr13 41923496 41923958 -59949211 - LOR1a LTR ERV1 0 497 1 596 280 93 28 chr13 41924953 41925167 -59948002 + MIR SINE MIR 2 229 -33 446 239 187 7 chr13 41925386 41925541 -59947628 - MIR SINE MIR -19 243 61 373 216 216 0 chr13 41926142 41926253 -59946916 + Tigger7 DNA MER2_type 2350 2484 -3 350 182 30 0 chr13 41926257 41926323 -59946846 - MLT1C LTR MaLR -390 77 10 289 355 32 0 chr13 41926364 41926488 -59946681 + MIR3 SINE MIR 61 188 -20 1517 244 45 8 chr13 41926624 41926779 -59946390 - MLT1A1 LTR MaLR 0 365 217 2360 161 67 7 chr13 41926779 41927214 -59945955 - LOR1b LTR ERV1 0 461 1 1517 244 45 8 chr13 41927214 41927410 -59945759 - MLT1A1 LTR MaLR -148 217 1 1733 210 22 28 chr13 41927644 41928006 -59945163 + MLT1A1 LTR MaLR 1 360 -5 345 47 0 0 chr13 41928895 41928938 -59944231 + (CA)n Simple_repeat Simple_repeat 2 44 0 479 123 12 0 chr13 41929463 41929544 -59943625 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 241 339 0 0 chr13 41930005 41930070 -59943099 + MIR SINE MIR 65 129 -79 26 0 0 0 chr13 41930130 41930156 -59943013 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr13 41930347 41930381 -59942788 + AT_rich Low_complexity Low_complexity 1 34 0 235 246 0 0 chr13 41930395 41930452 -59942717 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 56 0 0 chr13 41930708 41930744 -59942425 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr13 41931843 41931875 -59941294 + AT_rich Low_complexity Low_complexity 1 32 0 2133 66 7 14 chr13 41931979 41932307 -59940862 + AluY SINE Alu 1 326 0 237 330 47 0 chr13 41932490 41932596 -59940573 + MER94 DNA DNA 24 134 0 382 355 104 44 chr13 41933579 41933945 -59939224 - L3 LINE CR1 -87 1490 1103 438 234 135 0 chr13 41936998 41937109 -59936060 - L2 LINE L2 0 3313 3188 1872 123 7 7 chr13 41937223 41937499 -59935670 + AluSx SINE Alu 1 276 -36 39 22 0 0 chr13 41937507 41937553 -59935616 + AT_rich Low_complexity Low_complexity 1 46 0 1399 227 3 22 chr13 41938643 41938960 -59934209 - AluJo SINE Alu -1 311 1 22 0 0 0 chr13 41939737 41939759 -59933410 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr13 41939838 41939863 -59933306 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 283 216 11 11 chr13 41939868 41939956 -59933213 + (TA)n Simple_repeat Simple_repeat 2 89 0 1279 245 41 48 chr13 41941224 41941501 -59931668 - MLT1C LTR MaLR -8 459 185 722 182 0 8 chr13 41941501 41941633 -59931536 - FLAM_C SINE Alu -2 131 1 1279 245 41 48 chr13 41941633 41941817 -59931352 - MLT1C LTR MaLR -282 185 1 25 0 0 0 chr13 41942520 41942545 -59930624 + AT_rich Low_complexity Low_complexity 1 25 0 2287 112 0 0 chr13 41942812 41943125 -59930044 - AluSq SINE Alu 0 313 1 1566 194 29 41 chr13 41943484 41943829 -59929340 + MLT1A1 LTR MaLR 25 365 0 25 19 8 0 chr13 41944088 41944163 -59929006 + AT_rich Low_complexity Low_complexity 1 32 0 828 292 89 29 chr13 41944328 41944811 -59928358 - L1ME3A LINE L1 -15 6155 5644 1962 142 0 0 chr13 41944966 41945255 -59927914 - AluSx SINE Alu -23 289 1 912 269 22 8 chr13 41945255 41945541 -59927628 - L1P5 LINE L1 -541 5610 5315 257 266 0 0 chr13 41946304 41946368 -59926801 - L1MEd LINE L1 -5102 1017 954 775 195 0 0 chr13 41946373 41946501 -59926668 - FLAM_A SINE Alu -5 128 1 264 375 48 0 chr13 41947483 41947587 -59925582 + L2 LINE L2 3125 3233 -39 22 35 0 0 chr13 41947752 41947781 -59925388 + AT_rich Low_complexity Low_complexity 1 29 0 13029 227 23 13 chr13 41948590 41952487 -59920682 + L1PA16 LINE L1 1721 5674 -492 189 0 0 0 chr13 41952487 41952508 -59920661 + (TAA)n Simple_repeat Simple_repeat 1 21 0 13029 227 23 13 chr13 41952508 41953001 -59920168 + L1PA16 LINE L1 5674 6160 -6 210 335 152 25 chr13 41953126 41953323 -59919846 + MIR SINE MIR 17 238 -24 26 64 0 0 chr13 41953370 41953417 -59919752 + AT_rich Low_complexity Low_complexity 1 47 0 1763 153 31 3 chr13 41954200 41954494 -59918675 + MER47A DNA MER2_type 65 366 0 544 162 19 0 chr13 41954494 41954599 -59918570 - L1 LINE L1 -876 5270 5164 217 361 0 0 chr13 41954621 41954704 -59918465 - MIR SINE MIR -128 134 52 454 173 13 0 chr13 41955210 41955285 -59917884 + MLT1A1 LTR MaLR 12 87 -278 466 35 0 58 chr13 41955285 41955371 -59917798 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 1307 101 11 16 chr13 41955372 41955560 -59917609 - AluSg/x SINE Alu -15 294 108 1216 216 17 34 chr13 41955671 41955750 -59917419 + MLT1A1 LTR MaLR 75 154 -211 2035 89 68 0 chr13 41955750 41956031 -59917138 + AluSp SINE Alu 1 300 -13 1216 216 17 34 chr13 41956031 41956243 -59916926 + MLT1A1 LTR MaLR 154 361 -4 221 337 0 0 chr13 41957718 41957819 -59915350 + A-rich Low_complexity Low_complexity 1 101 0 651 343 20 12 chr13 41958567 41958812 -59914357 + MIR SINE MIR 2 248 -14 365 307 32 73 chr13 41959356 41959574 -59913595 - MIR SINE MIR -1 261 53 914 63 79 0 chr13 41959655 41959782 -59913387 + MER85 DNA T2_type 1 137 -2 2094 57 78 0 chr13 41960069 41960351 -59912818 + AluY SINE Alu 1 304 -7 661 277 140 96 chr13 41961747 41962248 -59910921 - MLT1G1 LTR MaLR 0 595 20 425 315 150 43 chr13 41962401 41962480 -59910689 - L2 LINE L2 -290 2982 2913 1771 160 163 3 chr13 41962480 41962849 -59910320 - MSTA LTR MaLR 0 428 1 425 315 150 43 chr13 41962849 41963326 -59909843 - L2 LINE L2 -359 2913 2373 273 254 282 0 chr13 41963480 41963590 -59909579 + MIR SINE MIR 122 262 0 1313 114 5 0 chr13 41963921 41964114 -59909055 + L1PB1 LINE L1 5957 6150 -1 2750 16 0 0 chr13 41964135 41964445 -59908724 + AluYb8 SINE Alu 1 310 -8 264 284 202 9 chr13 41964775 41964884 -59908285 - L2 LINE L2 -4 3309 3180 688 330 74 26 chr13 41965030 41965484 -59907685 - L2 LINE L2 -302 3011 2534 299 345 132 0 chr13 41967480 41967654 -59905515 + MIR SINE MIR 66 262 0 28 71 0 0 chr13 41967661 41967717 -59905452 + AT_rich Low_complexity Low_complexity 1 56 0 1013 221 25 8 chr13 41967743 41967978 -59905191 - AluJb SINE Alu -54 258 20 430 299 16 8 chr13 41967989 41968116 -59905053 + MLT1F1 LTR MaLR 1 128 -439 23 0 0 0 chr13 41970436 41970459 -59902710 + AT_rich Low_complexity Low_complexity 1 23 0 310 247 124 62 chr13 41971100 41971168 -59902001 - MLT1J LTR MaLR -215 235 173 2304 90 7 0 chr13 41971168 41971469 -59901700 + AluSx SINE Alu 1 303 -9 310 247 124 62 chr13 41971469 41971594 -59901575 - MLT1J LTR MaLR -277 173 64 1838 152 37 35 chr13 41971745 41972119 -59901050 + THE1C LTR MaLR 1 375 0 279 0 0 0 chr13 41972176 41972207 -59900962 + (CA)n Simple_repeat Simple_repeat 2 32 0 1173 290 65 43 chr13 41972263 41972738 -59900431 + MLT2D LTR ERVL 1 476 -44 234 0 0 0 chr13 41972738 41972764 -59900405 + (TG)n Simple_repeat Simple_repeat 2 27 0 1173 290 65 43 chr13 41972764 41972811 -59900358 + MLT2D LTR ERVL 476 520 0 31 0 0 0 chr13 41972821 41972852 -59900317 + AT_rich Low_complexity Low_complexity 1 31 0 760 300 33 29 chr13 41973834 41974141 -59899028 - HAL1b LINE L1 -796 552 245 2019 166 58 19 chr13 41975946 41976362 -59896807 - MSTB1 LTR MaLR 0 432 1 2023 136 0 13 chr13 41977141 41977449 -59895720 - AluSx SINE Alu -8 304 1 189 0 0 0 chr13 41978049 41978070 -59895099 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2119 183 21 38 chr13 41978485 41978911 -59894258 - MER74A LTR ERVL -137 421 3 532 176 138 58 chr13 41979026 41979256 -59893913 - SATR1 Satellite Satellite -111 248 1 1243 109 97 15 chr13 41979256 41979364 -59893805 - pTR5 LTR ERV1 0 2438 2340 7690 26 0 5 chr13 41979364 41980336 -59892833 - L1PA3 LINE L1 -3 6152 5182 1243 109 97 15 chr13 41980336 41980550 -59892619 - pTR5 LTR ERV1 -98 2340 8 518 56 0 0 chr13 41980552 41980624 -59892545 + L1PA2 LINE L1 6082 6153 -2 264 130 0 0 chr13 41980785 41980831 -59892338 + (CA)n Simple_repeat Simple_repeat 2 47 0 1137 149 6 6 chr13 41981180 41981196 -59891973 + AluSg/x SINE Alu 118 133 -179 2377 67 0 41 chr13 41981196 41981512 -59891657 + AluY SINE Alu 1 303 -8 1137 149 6 6 chr13 41981512 41981676 -59891493 + AluSg/x SINE Alu 132 298 -14 224 287 22 22 chr13 41981859 41981995 -59891174 + (CATATA)n Simple_repeat Simple_repeat 3 138 0 393 22 0 0 chr13 41982243 41982289 -59890880 + (CA)n Simple_repeat Simple_repeat 2 47 0 3467 185 31 22 chr13 41983098 41984094 -59889075 - L1P4 LINE L1 -625 5541 4543 2390 132 76 38 chr13 41984149 41984595 -59888574 - MER4C LTR ERV1 0 465 3 1272 123 3 137 chr13 41984622 41984907 -59888262 - MER4C-int LTR ERV1 -9 6589 6343 6294 97 5 5 chr13 41984913 41985797 -59887372 + L1PA10 LINE L1 5268 6151 -17 207 0 0 0 chr13 41985802 41985825 -59887344 + (CAA)n Simple_repeat Simple_repeat 2 24 0 262 351 18 13 chr13 41985910 41986135 -59887034 + L1ME LINE L1 5523 5748 -373 216 158 0 0 chr13 41986263 41986301 -59886868 + (TA)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr13 41986489 41986518 -59886651 + AT_rich Low_complexity Low_complexity 1 29 0 222 150 0 0 chr13 41986585 41986625 -59886544 + (TC)n Simple_repeat Simple_repeat 1 40 0 2144 108 20 0 chr13 41986625 41986920 -59886249 - AluSx SINE Alu -9 303 3 26 64 0 0 chr13 41987574 41987621 -59885548 + AT_rich Low_complexity Low_complexity 1 47 0 27 0 0 0 chr13 41987637 41987664 -59885505 + AT_rich Low_complexity Low_complexity 1 27 0 2293 100 3 0 chr13 41988620 41988920 -59884249 - AluSc SINE Alu -8 301 1 2411 62 7 13 chr13 41990354 41990662 -59882507 + AluYa5 SINE Alu 1 306 -5 231 261 14 29 chr13 41991541 41991610 -59881559 + MER5A DNA MER1_type 96 163 -26 1606 275 53 45 chr13 41991811 41992032 -59881137 - MLT1E2 LTR MaLR 0 626 408 3012 192 8 31 chr13 41992032 41992682 -59880487 + LTR27 LTR ERV1 2 636 0 1606 275 53 45 chr13 41992682 41993081 -59880088 - MLT1E2 LTR MaLR -218 408 1 227 289 106 28 chr13 41993254 41993396 -59879773 - L3 LINE CR1 -576 1001 849 2369 71 3 10 chr13 41994789 41995099 -59878070 - AluY SINE Alu -3 308 1 593 303 90 36 chr13 41995107 41995609 -59877560 - L1MC/D LINE L1 -1990 5818 5290 22 0 0 0 chr13 41995922 41995944 -59877225 + AT_rich Low_complexity Low_complexity 1 22 0 348 307 123 43 chr13 41996128 41996405 -59876764 - L1MC/D LINE L1 -1446 4700 4402 678 238 26 0 chr13 41996414 41996565 -59876604 - MLT1A2 LTR MaLR -2 372 218 512 301 97 77 chr13 41996849 41997764 -59875405 - L1MC/D LINE L1 -2313 3833 2900 2258 79 0 47 chr13 41997977 41998295 -59874874 - AluY SINE Alu -4 307 5 302 268 140 6 chr13 41998958 41999115 -59874054 + MER69 DNA AcHobo 2342 2519 -7 33 56 0 0 chr13 41999297 41999351 -59873818 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr13 41999612 41999633 -59873536 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 41999770 41999792 -59873377 + AT_rich Low_complexity Low_complexity 1 22 0 1348 187 19 66 chr13 42000563 42000950 -59872219 + MER67C LTR ERV1 20 404 -245 523 201 11 98 chr13 42000960 42001134 -59872035 + MER67D LTR ERV1 356 514 0 232 362 181 5 chr13 42001148 42001347 -59871822 - L2 LINE L2 -192 3121 2888 224 221 12 0 chr13 42001371 42001429 -59871740 - MIR3 SINE MIR -52 156 97 677 281 60 0 chr13 42001846 42002031 -59871138 + MIR SINE MIR 56 251 -11 573 209 70 67 chr13 42002201 42002517 -59870652 - L1MC5 LINE L1 -168 7793 7477 1833 101 4 30 chr13 42003308 42003575 -59869594 - AluSg SINE Alu -14 296 37 180 77 0 0 chr13 42004987 42005013 -59868156 + (GA)n Simple_repeat Simple_repeat 1 26 0 2267 110 3 0 chr13 42006534 42006835 -59866334 + AluY SINE Alu 1 302 -9 233 176 0 0 chr13 42006846 42006880 -59866289 + AluSx SINE Alu 1 34 -268 4121 137 72 47 chr13 42006880 42007782 -59865387 - pTR5 LTR ERV1 0 2606 1524 1290 183 52 57 chr13 42007779 42008355 -59864814 - pTR5 LTR ERV1 -1085 1353 741 * 4198 136 100 138 chr13 42008351 42009538 -59863631 - pTR5 LTR ERV1 -231 2029 5 1681 149 0 33 chr13 42009538 42009813 -59863356 + AluSx SINE Alu 31 296 -16 612 210 19 0 chr13 42010235 42010392 -59862777 - L1 LINE L1 -3644 3462 3303 338 60 0 20 chr13 42010505 42010555 -59862614 + (TTCCC)n Simple_repeat Simple_repeat 2 50 0 666 218 0 0 chr13 42010556 42010689 -59862480 - FLAM_C SINE Alu 0 133 1 752 232 152 24 chr13 42010694 42010905 -59862264 - L1 LINE L1 -6792 238 1 24 0 0 0 chr13 42011189 42011213 -59861956 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr13 42012243 42012280 -59860889 + AT_rich Low_complexity Low_complexity 1 37 0 1006 228 103 16 chr13 42012289 42012601 -59860568 + L1MD3 LINE L1 6772 7110 -885 240 258 0 62 chr13 42012605 42012702 -59860467 + MLT1F1 LTR MaLR 35 125 -442 1649 205 50 8 chr13 42012702 42013082 -59860087 + L1MD3 LINE L1 7410 7805 -190 * 4190 128 30 8 chr13 42013072 42013827 -59859342 - L1PB1 LINE L1 -4011 2852 2043 * 10144 195 17 1 chr13 42013824 42015899 -59857270 + L1PB1 LINE L1 2849 4957 -1905 9845 17 0 0 chr13 42015894 42017434 -59855735 - L1P1 LINE L1 -386 5769 4230 * 3447 3 0 0 chr13 42017431 42017816 -59855353 + L1HS LINE L1 5771 6155 0 * 5935 156 6 18 chr13 42017817 42018496 -59854673 + L1PB1 LINE L1 4949 5634 -1233 2269 92 0 20 chr13 42018496 42018791 -59854378 - AluY SINE Alu -22 289 1 5935 156 6 18 chr13 42018791 42020058 -59853111 + L1PB1 LINE L1 5634 6866 -1 1715 184 31 0 chr13 42020080 42020374 -59852795 + AluSx SINE Alu 1 303 -9 539 243 14 65 chr13 42020377 42020429 -59852740 + L1MD3 LINE L1 7791 7844 -151 12591 142 70 9 chr13 42020429 42022707 -59850462 + Tigger1 DNA MER2_type 1 2418 0 539 243 14 65 chr13 42022707 42022868 -59850301 + L1MD3 LINE L1 7844 7993 -2 7618 32 0 0 chr13 42024215 42025376 -59847793 - L1PA3 LINE L1 0 6155 4995 7506 26 1 10 chr13 42028057 42029120 -59844049 + L1PA4 LINE L1 5101 6155 0 6461 109 47 27 chr13 42029135 42029531 -59843638 + LOR1-int LTR ERV1 4370 4757 -3363 209 33 33 0 chr13 42029531 42029561 -59843608 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1720 150 4 0 chr13 42029564 42029817 -59843352 - AluSx SINE Alu -31 281 28 6461 109 47 27 chr13 42029817 42030549 -59842620 + LOR1-int LTR ERV1 4758 5524 -2596 1763 107 44 4 chr13 42030529 42030801 -59842368 + LOR1-int LTR ERV1 5782 6064 -2056 * 433 139 42 0 chr13 42030800 42030872 -59842297 + LOR1-int LTR ERV1 8030 8104 -16 * 1889 152 7 0 chr13 42030892 42031182 -59841987 - AluSx SINE Alu -20 292 1 631 99 0 11 chr13 42031222 42031313 -59841856 - HY4 scRNA scRNA -3 90 1 3992 114 57 22 chr13 42031313 42031994 -59841175 + Tigger3b DNA MER2_type 282 986 -245 203 199 38 107 chr13 42032993 42033124 -59840045 - L2 LINE L2 -81 3232 3111 267 317 127 21 chr13 42033205 42033347 -59839822 - MIR SINE MIR -87 175 19 468 307 84 0 chr13 42033535 42033701 -59839468 - MIR SINE MIR -40 222 43 185 208 75 0 chr13 42034000 42034053 -59839116 + L2 LINE L2 3203 3259 -54 230 279 199 35 chr13 42034125 42034412 -59838757 - L2 LINE L2 -697 2617 2284 237 65 0 0 chr13 42035002 42035033 -59838136 + (TTC)n Simple_repeat Simple_repeat 2 32 0 511 235 0 53 chr13 42035670 42035802 -59837367 + MER70B LTR ERVL 454 578 0 381 71 0 0 chr13 42035958 42036014 -59837155 + L1MA2 LINE L1 6249 6304 0 394 317 0 0 chr13 42036144 42036245 -59836924 - L2 LINE L2 -8 3264 3164 1998 121 3 32 chr13 42037059 42037373 -59835796 + AluSp SINE Alu 1 305 -8 277 327 25 94 chr13 42038544 42038819 -59834350 + L2 LINE L2 3046 3301 -12 207 186 0 0 chr13 42039869 42039912 -59833257 + (CA)n Simple_repeat Simple_repeat 2 44 0 237 83 0 0 chr13 42040131 42040167 -59833002 + (TG)n Simple_repeat Simple_repeat 1 36 0 348 325 167 30 chr13 42040745 42041080 -59832089 + L2 LINE L2 2828 3208 -105 24 32 0 0 chr13 42041123 42041154 -59832015 + AT_rich Low_complexity Low_complexity 1 31 0 367 280 126 6 chr13 42043410 42043585 -59829584 + MIR SINE MIR 51 246 -16 369 221 39 0 chr13 42043872 42043949 -59829220 - MLT1A1 LTR MaLR -2 363 284 * 1207 190 29 37 chr13 42043948 42044190 -59828979 - MLT1A1 LTR MaLR -42 323 84 23 0 0 0 chr13 42044571 42044594 -59828575 + AT_rich Low_complexity Low_complexity 1 23 0 227 245 14 18 chr13 42044745 42044966 -59828203 + (TA)n Simple_repeat Simple_repeat 1 220 0 2281 106 0 0 chr13 42045778 42046080 -59827089 - AluSx SINE Alu -9 303 2 30 0 0 0 chr13 42046613 42046643 -59826526 + AT_rich Low_complexity Low_complexity 1 30 0 533 274 178 0 chr13 42046801 42046998 -59826171 - MIR SINE MIR -8 254 23 28 0 0 0 chr13 42047135 42047163 -59826006 + AT_rich Low_complexity Low_complexity 1 28 0 831 211 123 55 chr13 42047938 42048372 -59824797 - MLT1D LTR MaLR -18 487 1 3591 161 9 3 chr13 42048683 42049328 -59823841 - L1MA4 LINE L1 -14 6286 5638 567 222 105 0 chr13 42050424 42050586 -59822583 - MIR SINE MIR -11 251 73 237 322 23 0 chr13 42051250 42051337 -59821832 - L2 LINE L2 0 3272 3184 2326 125 19 14 chr13 42051614 42051974 -59821195 - THE1B LTR MaLR 0 364 3 353 325 30 57 chr13 42052134 42052469 -59820700 - L1MC/D LINE L1 -2215 5593 5268 1770 169 38 11 chr13 42054945 42055312 -59817857 + L1MA8 LINE L1 5913 6289 -2 1206 218 17 4 chr13 42055541 42055780 -59817389 + MSTD LTR MaLR 155 396 0 21 0 0 0 chr13 42055905 42055926 -59817243 + AT_rich Low_complexity Low_complexity 1 21 0 225 384 44 30 chr13 42056027 42056230 -59816939 - L3 LINE CR1 -321 1256 1051 192 321 85 45 chr13 42056234 42056458 -59816711 - L3 LINE CR1 -1190 387 155 22 35 0 0 chr13 42056951 42056980 -59816189 + AT_rich Low_complexity Low_complexity 1 29 0 366 157 60 0 chr13 42056980 42057063 -59816106 + L1MA8 LINE L1 6113 6200 -91 4343 237 34 21 chr13 42057165 42058752 -59814417 - L1MD2 LINE L1 -10 6767 5160 189 195 0 0 chr13 42058884 42058925 -59814244 + (TA)n Simple_repeat Simple_repeat 2 42 0 1921 227 13 11 chr13 42058976 42059434 -59813735 - L1MC3 LINE L1 -167 7618 7160 1616 237 94 36 chr13 42059451 42060135 -59813034 + L1M4 LINE L1 4173 4895 -1251 289 316 12 0 chr13 42060148 42060316 -59812853 + L1M4 LINE L1 4969 5138 -1008 21 95 0 0 chr13 42060381 42060444 -59812725 + AT_rich Low_complexity Low_complexity 1 63 0 6083 263 34 23 chr13 42060663 42063040 -59810129 - L1MD2 LINE L1 -1914 4650 2278 1418 264 14 0 chr13 42063041 42063333 -59809836 + HERV3 LTR ERV1 8012 8307 -119 1253 203 33 25 chr13 42063333 42063609 -59809560 + MLT1A2 LTR MaLR 97 374 0 3007 279 50 41 chr13 42063624 42065005 -59808164 - L1MD2 LINE L1 -4634 1930 564 1581 169 191 8 chr13 42065005 42065367 -59807802 - MSTA LTR MaLR 0 428 1 9133 152 7 34 chr13 42065367 42066989 -59806180 - MSTA-int LTR MaLR 0 1580 3 1444 175 194 6 chr13 42066991 42067351 -59805818 - MSTA LTR MaLR 0 428 1 3007 279 50 41 chr13 42067351 42067870 -59805299 - L1MD2 LINE L1 -6000 564 1 738 199 0 0 chr13 42069212 42069343 -59803826 - FLAM_A SINE Alu -2 131 1 238 331 79 14 chr13 42069343 42069482 -59803687 + L2 LINE L2 1873 2020 -1294 964 120 35 0 chr13 42069522 42069664 -59803505 - AluJb SINE Alu -9 303 157 335 373 86 25 chr13 42069959 42070321 -59802848 + L2 LINE L2 2521 2904 -410 198 59 20 78 chr13 42071305 42071356 -59801813 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr13 42071362 42071386 -59801783 + AT_rich Low_complexity Low_complexity 1 24 0 189 171 0 0 chr13 42071401 42071436 -59801733 + (TA)n Simple_repeat Simple_repeat 2 36 0 331 240 34 0 chr13 42071477 42071623 -59801546 + (TA)n Simple_repeat Simple_repeat 2 152 0 248 197 14 28 chr13 42072658 42072729 -59800440 + Charlie7 DNA MER1_type 40 109 -2503 589 297 38 55 chr13 42072956 42073192 -59799977 + MIR SINE MIR 6 237 -25 510 129 0 0 chr13 42073741 42073826 -59799343 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 396 340 126 29 chr13 42073905 42074395 -59798774 + L2 LINE L2 2603 3144 -169 184 135 19 19 chr13 42074580 42074632 -59798537 + (CA)n Simple_repeat Simple_repeat 2 53 0 32 26 0 0 chr13 42074678 42074717 -59798452 + AT_rich Low_complexity Low_complexity 1 39 0 540 81 0 0 chr13 42077506 42077580 -59795589 + (TG)n Simple_repeat Simple_repeat 2 75 0 1710 97 0 0 chr13 42077997 42078214 -59794955 + AluSc SINE Alu 1 217 -92 1220 218 50 88 chr13 42078505 42078905 -59794264 + MLT1B LTR MaLR 1 385 -5 446 33 17 0 chr13 42078905 42078965 -59794204 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 191 279 0 0 chr13 42079535 42079578 -59793591 - MIR SINE MIR -133 129 87 477 321 82 53 chr13 42079776 42080190 -59792979 + MLT1K LTR MaLR 157 582 -6 13890 139 32 22 chr13 42080255 42081434 -59791735 + Tigger1 DNA MER2_type 24 1191 -1227 2304 108 0 0 chr13 42081434 42081729 -59791440 - AluSg SINE Alu -15 295 1 13890 139 32 22 chr13 42081729 42082922 -59790247 + Tigger1 DNA MER2_type 1191 2418 0 305 353 26 9 chr13 42084734 42084850 -59788319 - MIR SINE MIR -113 149 32 903 217 0 0 chr13 42084887 42085053 -59788116 + MER58A DNA MER1_type 43 208 -16 828 224 112 0 chr13 42136988 42137184 -59735985 + MLT1E1 LTR MaLR 433 650 -4 22 80 0 0 chr13 42138033 42138083 -59735086 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr13 42138632 42138654 -59734515 + AT_rich Low_complexity Low_complexity 1 22 0 1787 167 10 3 chr13 42139013 42139319 -59733850 - AluJb SINE Alu -4 308 1 28 61 0 0 chr13 42140716 42140765 -59732404 + AT_rich Low_complexity Low_complexity 1 49 0 1716 174 3 23 chr13 42140765 42141069 -59732100 - AluJb SINE Alu -14 298 1 627 297 116 14 chr13 42141152 42141428 -59731741 + MLT1I LTR MaLR 106 409 0 293 0 27 0 chr13 42143718 42143755 -59729414 + (TA)n Simple_repeat Simple_repeat 1 38 0 28 29 0 0 chr13 42143899 42143934 -59729235 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr13 42145005 42145051 -59728118 + AT_rich Low_complexity Low_complexity 1 46 0 366 257 124 0 chr13 42145222 42145335 -59727834 - MIR SINE MIR -109 153 27 241 312 64 52 chr13 42147115 42147288 -59725881 + MIR SINE MIR 74 248 -14 1447 201 3 24 chr13 42147293 42147587 -59725582 - AluJo SINE Alu -24 288 1 352 226 32 90 chr13 42147787 42147942 -59725227 + LTR52 LTR ERVL 1 146 -275 900 158 50 0 chr13 42147961 42148100 -59725069 - FRAM SINE Alu -30 146 1 1335 249 52 9 chr13 42148302 42148583 -59724586 + MER20B DNA MER1_type 231 540 -243 2417 43 0 0 chr13 42148583 42148896 -59724273 - AluY SINE Alu 0 313 1 1335 249 52 9 chr13 42148896 42149058 -59724111 + MER20B DNA MER1_type 540 694 -89 267 31 0 0 chr13 42149059 42149091 -59724078 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1844 58 0 73 chr13 42149093 42149353 -59723816 - AluY SINE Alu -32 279 39 21 36 0 0 chr13 42150158 42150186 -59722983 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 42150739 42150771 -59722398 + AT_rich Low_complexity Low_complexity 1 32 0 348 332 96 18 chr13 42150789 42151018 -59722151 - MIR SINE MIR 0 262 16 22 56 0 0 chr13 42151042 42151078 -59722091 + AT_rich Low_complexity Low_complexity 1 36 0 2267 85 0 3 chr13 42152209 42152515 -59720654 - AluSc SINE Alu -4 305 1 215 211 21 74 chr13 42152842 42152937 -59720232 + MIR SINE MIR 117 206 -56 315 344 129 12 chr13 42155177 42155340 -59717829 + L2 LINE L2 3090 3271 -1 1996 116 17 7 chr13 42155537 42155830 -59717339 - AluSx SINE Alu -16 296 1 26 0 0 0 chr13 42156618 42156644 -59716525 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr13 42156713 42156750 -59716419 + AT_rich Low_complexity Low_complexity 1 37 0 216 97 0 0 chr13 42157234 42157265 -59715904 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 317 169 26 0 chr13 42157267 42157344 -59715825 + (TATG)n Simple_repeat Simple_repeat 4 82 0 29 47 0 0 chr13 42157486 42157529 -59715640 + AT_rich Low_complexity Low_complexity 1 43 0 240 316 60 51 chr13 42157701 42157818 -59715351 + MIR SINE MIR 32 149 -59 430 304 17 33 chr13 42158738 42158919 -59714250 + MER5B DNA MER1_type 1 178 0 267 103 0 0 chr13 42159034 42159073 -59714096 + (TG)n Simple_repeat Simple_repeat 2 40 0 229 297 158 20 chr13 42159998 42160200 -59712969 + LTR50 LTR ERVL 10 239 -556 465 259 37 107 chr13 42160237 42160592 -59712577 + LTR33A LTR ERVL 194 523 0 430 257 0 9 chr13 42160861 42160966 -59712203 - MER45A DNA AcHobo 0 178 75 1598 170 41 4 chr13 42161319 42161609 -59711560 + AluJb SINE Alu 3 302 0 3515 180 113 81 chr13 42162807 42163795 -59709374 - LTR28 LTR ERV1 0 1020 1 614 287 82 20 chr13 42163797 42164090 -59709079 - L1ME3A LINE L1 -18 6152 5842 2699 84 0 3 chr13 42165006 42165362 -59707807 + THE1A LTR MaLR 1 355 0 23 78 0 0 chr13 42166082 42166133 -59707036 + AT_rich Low_complexity Low_complexity 1 51 0 249 347 48 40 chr13 42166301 42166425 -59706744 - L2 LINE L2 -4 3268 3144 4412 121 38 13 chr13 42168265 42168968 -59704201 - HSMAR2 DNA Mariner -1 1301 581 2196 92 13 19 chr13 42168968 42169283 -59703886 + AluSq SINE Alu 1 313 0 931 110 11 22 chr13 42169283 42169299 -59703870 + (GGAA)n Simple_repeat Simple_repeat 1 195 0 931 110 11 22 chr13 42169299 42169481 -59703688 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3617 129 12 12 chr13 42169506 42170096 -59703073 - HSMAR2 DNA Mariner -707 595 6 230 232 88 32 chr13 42170122 42170247 -59702922 + L1ME LINE L1 5707 5838 -283 195 183 16 32 chr13 42170258 42170384 -59702785 + (TA)n Simple_repeat Simple_repeat 2 125 0 23 92 0 0 chr13 42170398 42170463 -59702706 + AT_rich Low_complexity Low_complexity 1 65 0 1864 134 41 3 chr13 42172453 42172745 -59700424 + AluSg SINE Alu 1 303 -7 252 222 74 0 chr13 42173897 42173951 -59699218 - L2 LINE L2 -19 3253 3196 30 27 0 0 chr13 42175086 42175123 -59698046 + AT_rich Low_complexity Low_complexity 1 37 0 239 71 24 0 chr13 42178121 42178163 -59695006 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr13 42178446 42178481 -59694688 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 42178773 42178801 -59694368 + AT_rich Low_complexity Low_complexity 1 28 0 42 0 0 0 chr13 42179082 42179124 -59694045 + AT_rich Low_complexity Low_complexity 1 42 0 208 147 0 0 chr13 42179157 42179191 -59693978 + (T)n Simple_repeat Simple_repeat 1 34 0 42709 33 21 1 chr13 42179191 42185219 -59687950 - L1PA2 LINE L1 0 6155 7 419 336 103 17 chr13 42185420 42185652 -59687517 - MIR SINE MIR -9 253 2 33 0 0 0 chr13 42185675 42185708 -59687461 + AT_rich Low_complexity Low_complexity 1 33 0 467 159 38 6 chr13 42185743 42185900 -59687269 + (TA)n Simple_repeat Simple_repeat 1 162 0 1979 143 61 47 chr13 42185907 42186333 -59686836 - L1MA8 LINE L1 -4 6287 5856 1984 208 74 11 chr13 42186686 42187161 -59686008 - LTR22 LTR ERVK -4 505 1 2004 135 0 0 chr13 42188564 42188852 -59684317 - AluY SINE Alu -23 288 1 2994 125 16 57 chr13 42189029 42189525 -59683644 + LTR43 LTR ERV1 1 476 -126 3973 129 58 48 chr13 42189528 42190305 -59682864 - LTR1 LTR ERV1 0 785 1 927 86 0 0 chr13 42190347 42190475 -59682694 + LTR43 LTR ERV1 475 602 0 372 303 99 13 chr13 42191436 42191588 -59681581 - MIR SINE MIR -93 169 5 208 315 99 45 chr13 42191603 42191714 -59681455 - L2 LINE L2 -7 3306 3190 333 292 55 81 chr13 42192213 42192610 -59680559 + L1MC4a LINE L1 5523 5909 -1899 35 71 0 0 chr13 42193235 42193305 -59679864 + AT_rich Low_complexity Low_complexity 1 70 0 283 207 77 0 chr13 42194347 42194419 -59678750 + AluS SINE Alu 1 69 -234 1088 131 61 28 chr13 42194419 42194633 -59678536 + LTR12 LTR ERV1 39 259 -455 327 297 0 0 chr13 42194678 42194779 -59678390 + LTR30 LTR ERV1 524 624 -98 657 202 25 0 chr13 42194779 42194898 -59678271 + LTR12 LTR ERV1 359 480 -234 1636 132 0 20 chr13 42194899 42195149 -59678020 + AluSc SINE Alu 31 275 -34 926 195 32 20 chr13 42195716 42196110 -59677059 + L1MC4a LINE L1 7062 7510 -298 372 259 29 7 chr13 42196134 42196273 -59676896 + L1MC4a LINE L1 7662 7803 -5 332 363 73 16 chr13 42196424 42196672 -59676497 - L1 LINE L1 -1145 5001 4740 2242 111 0 3 chr13 42197058 42197364 -59675805 + AluSq SINE Alu 1 305 -8 255 277 30 40 chr13 42197409 42197510 -59675659 + L1MEd LINE L1 674 773 -5432 1986 77 9 77 chr13 42197612 42197903 -59675266 + AluY SINE Alu 1 269 -42 369 43 0 0 chr13 42197903 42197950 -59675219 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1986 77 9 77 chr13 42197950 42197984 -59675185 + AluY SINE Alu 269 304 -7 404 296 105 38 chr13 42198025 42198339 -59674830 + L1MEd LINE L1 1046 1380 -5016 1090 296 132 25 chr13 42198599 42199218 -59673951 + L2 LINE L2 2365 3037 -235 235 262 115 0 chr13 42199299 42199360 -59673809 + L2 LINE L2 3213 3280 -33 196 314 14 0 chr13 42199360 42199430 -59673739 + L2 LINE L2 3241 3311 -2 283 246 16 56 chr13 42199437 42199563 -59673606 + HAL1 LINE L1 1524 1644 -863 300 319 21 21 chr13 42200016 42200160 -59673009 + L1MEd LINE L1 2546 2689 -3526 2241 75 21 0 chr13 42200533 42200836 -59672333 + AluSp SINE Alu 1 309 0 1217 227 73 70 chr13 42200968 42201500 -59671669 + L1MC4a LINE L1 5560 6093 -1715 * 4817 126 8 18 chr13 42201497 42201567 -59671602 + L1PA15 LINE L1 5263 5332 -833 2560 147 16 19 chr13 42201567 42201996 -59671173 + MSTA LTR MaLR 1 428 0 4817 126 8 18 chr13 42201996 42202702 -59670467 + L1PA15 LINE L1 5332 6031 -134 391 136 0 0 chr13 42202707 42202773 -59670396 + L1PA16 LINE L1 6097 6162 -4 338 268 53 91 chr13 42202873 42203138 -59670031 - L1MC4a LINE L1 -1544 6658 6404 248 211 11 84 chr13 42203171 42203266 -59669903 - L1MC4a LINE L1 -2050 6152 6065 728 256 18 0 chr13 42203300 42203464 -59669705 - L1MC4a LINE L1 -2127 6075 5909 1934 214 21 3 chr13 42203544 42203918 -59669251 + MLT1B LTR MaLR 3 383 -7 785 269 45 11 chr13 42203969 42204344 -59668825 + L1MEd LINE L1 2715 3102 -3113 986 294 125 22 chr13 42204345 42204828 -59668341 + HERV16 LTR ERVL 1974 2562 -2646 2536 109 67 5 chr13 42204828 42205231 -59667938 - MSTA LTR MaLR 0 428 1 986 294 125 22 chr13 42205231 42205340 -59667829 + HERV16 LTR ERVL 2562 2658 -2550 477 211 96 0 chr13 42205708 42205864 -59667305 - L1MC4a LINE L1 -1086 5454 5284 720 275 67 49 chr13 42205876 42206015 -59667154 - L1MC4a LINE L1 -1386 5154 5019 333 0 0 0 chr13 42206015 42206052 -59667117 + (CA)n Simple_repeat Simple_repeat 2 38 0 720 275 67 49 chr13 42206052 42206483 -59666686 - L1MC4a LINE L1 -1521 5019 4574 1311 189 4 48 chr13 42206533 42206803 -59666366 + AluJo SINE Alu 1 258 -54 2073 267 39 17 chr13 42206804 42207519 -59665650 - L1MC4a LINE L1 -2045 4495 3765 410 266 84 56 chr13 42207521 42207664 -59665505 + MLT1C LTR MaLR 230 376 -91 8146 216 65 34 chr13 42207697 42208086 -59665083 - L1MC4a LINE L1 -4153 2387 2011 2012 126 0 14 chr13 42208086 42208379 -59664790 + AluSx SINE Alu 5 293 -19 8146 216 65 34 chr13 42208379 42210194 -59662975 - L1MC4a LINE L1 -4529 2011 115 232 387 73 0 chr13 42211053 42211177 -59661992 + L3b LINE CR1 1396 1528 -55 21 0 0 0 chr13 42211407 42211428 -59661741 + AT_rich Low_complexity Low_complexity 1 21 0 3676 93 205 0 chr13 42211950 42212521 -59660648 - LTR12 LTR ERV1 0 688 1 1363 166 36 0 chr13 42212769 42212992 -59660177 + AluJo SINE Alu 1 231 -81 285 140 0 40 chr13 42213058 42213108 -59660061 + AluJo SINE Alu 241 288 -14 28 0 0 0 chr13 42213112 42213140 -59660029 + AT_rich Low_complexity Low_complexity 1 28 0 2358 153 66 18 chr13 42214200 42214637 -59658532 + LOR1b LTR ERV1 1 458 -3 327 96 0 0 chr13 42214637 42214689 -59658480 + (CA)n Simple_repeat Simple_repeat 2 53 0 31 0 0 0 chr13 42214836 42214867 -59658302 + AT_rich Low_complexity Low_complexity 1 31 0 2063 120 0 0 chr13 42214965 42215276 -59657893 - AluY SINE Alu 0 311 1 244 417 48 21 chr13 42215743 42216033 -59657136 - L2 LINE L2 -166 3106 2809 3756 137 33 80 chr13 42216155 42216978 -59656191 + LTR1 LTR ERV1 1 784 -1 448 257 84 55 chr13 42217073 42217275 -59655894 - L2 LINE L2 -1241 2073 1866 689 84 19 19 chr13 42217489 42217596 -59655573 + LTR23 LTR ERV1 1 107 -330 538 92 0 0 chr13 42217599 42217675 -59655494 + LTR24 LTR ERV1 392 467 0 1773 157 108 59 chr13 42217916 42218325 -59654844 + LTR49 LTR ERV1 7 435 -160 297 159 58 29 chr13 42218306 42218375 -59654794 + LTR48 LTR ERV1 602 672 -115 * 6962 140 199 19 chr13 42218379 42219817 -59653352 + pTR5 LTR ERV1 742 2438 0 688 123 9 9 chr13 42219821 42219935 -59653234 + LTR49 LTR ERV1 482 595 0 4730 212 69 52 chr13 42219937 42221290 -59651879 + LTR49-int LTR ERV1 1 1376 -4955 352 186 28 117 chr13 42221827 42221972 -59651197 + LTR49-int LTR ERV1 1590 1721 -4610 1106 175 130 33 chr13 42222006 42222337 -59650832 - LTR49 LTR ERV1 0 595 238 2320 211 30 18 chr13 42222394 42222892 -59650277 + LTR49-int LTR ERV1 1730 2233 -4098 2193 175 82 62 chr13 42222995 42223578 -59649591 + LTR49 LTR ERV1 1 595 0 209 301 88 26 chr13 42223610 42223723 -59649446 - L2 LINE L2 -1497 1817 1698 214 244 0 0 chr13 42223724 42223765 -59649404 + polypyrimidine Low_complexity Low_complexity 2 42 0 1678 176 17 3 chr13 42224101 42224391 -59648778 - AluJb SINE Alu -18 294 1 279 0 0 0 chr13 42224764 42224795 -59648374 + (TG)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr13 42226404 42226425 -59646744 + (TA)n Simple_repeat Simple_repeat 1 21 0 23 33 0 0 chr13 42226454 42226484 -59646685 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr13 42226619 42226652 -59646517 + AT_rich Low_complexity Low_complexity 1 33 0 414 276 76 36 chr13 42226683 42226933 -59646236 + L1MC4 LINE L1 5255 5514 -2294 377 257 186 9 chr13 42226946 42227156 -59646013 + L1MC4 LINE L1 5655 5901 -1907 2289 224 107 84 chr13 42227220 42227946 -59645223 + L1ME1 LINE L1 3909 4617 -1549 2083 117 7 3 chr13 42227946 42228246 -59644923 - AluSx SINE Alu -10 302 2 2289 224 107 84 chr13 42228246 42228750 -59644419 + L1ME1 LINE L1 4617 5108 -1058 1832 134 55 7 chr13 42228750 42229041 -59644128 - AluSx SINE Alu -7 305 1 2289 224 107 84 chr13 42229041 42229966 -59643203 + L1ME1 LINE L1 5108 6161 -5 239 316 46 35 chr13 42229989 42230163 -59643006 + L1MC4 LINE L1 6935 7110 -932 549 175 0 10 chr13 42231282 42231379 -59641790 + MER4A LTR ERV1 1 96 -568 1617 122 3 81 chr13 42231381 42231745 -59641424 + MER4A LTR ERV1 261 664 0 197 280 235 8 chr13 42231809 42231941 -59641228 - MIR SINE MIR 0 262 101 342 0 0 0 chr13 42233431 42233469 -59639700 + (TG)n Simple_repeat Simple_repeat 2 39 0 192 333 121 50 chr13 42234368 42234467 -59638702 + L2 LINE L2 3149 3254 -18 281 293 130 8 chr13 42234624 42234747 -59638422 - L2 LINE L2 -8 3305 3168 22 56 0 0 chr13 42235453 42235489 -59637680 + AT_rich Low_complexity Low_complexity 1 36 0 11187 159 53 6 chr13 42236643 42238634 -59634535 - Ricksha_c DNA DNA -13 2033 8 1737 220 8 3 chr13 42238703 42239066 -59634103 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr13 42239215 42239244 -59633925 + AT_rich Low_complexity Low_complexity 1 29 0 298 211 11 21 chr13 42239310 42239405 -59633764 + (CATA)n Simple_repeat Simple_repeat 3 96 0 345 340 40 67 chr13 42239922 42240222 -59632947 + LTR16A LTR ERVL 149 440 -10 278 287 66 59 chr13 42241087 42241223 -59631946 - L3 LINE CR1 -1018 559 423 324 341 54 45 chr13 42241840 42242046 -59631123 + LTR16C LTR ERVL 158 370 -121 2098 204 35 2 chr13 42242046 42242498 -59630671 + MLT1C LTR MaLR 1 467 0 324 341 54 45 chr13 42242498 42242622 -59630547 + LTR16C LTR ERVL 370 491 0 208 45 119 0 chr13 42243499 42243566 -59629603 + (TA)n Simple_repeat Simple_repeat 1 75 0 247 157 36 24 chr13 42243571 42243654 -59629515 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 520 54 124 2 chr13 42243654 42244112 -59629057 + (TA)n Simple_repeat Simple_repeat 1 513 0 1125 213 143 27 chr13 42244373 42244701 -59628468 - MLT1A2 LTR MaLR -4 370 5 471 178 195 81 chr13 42244773 42244947 -59628222 + MLT1A1 LTR MaLR 1 194 -171 216 0 0 0 chr13 42245118 42245142 -59628027 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr13 42245676 42245705 -59627464 + AT_rich Low_complexity Low_complexity 1 29 0 191 308 39 13 chr13 42247223 42247301 -59625868 - L3 LINE CR1 -870 707 628 217 371 57 0 chr13 42247453 42247558 -59625611 - MIR SINE MIR -96 166 56 220 319 126 25 chr13 42248758 42248877 -59624292 - L3 LINE CR1 -1081 496 366 2012 114 0 13 chr13 42249915 42250213 -59622956 - AluSg SINE Alu 0 310 17 242 125 21 0 chr13 42250288 42250336 -59622833 + (TA)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 42250421 42250442 -59622727 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 42250869 42250900 -59622269 + AT_rich Low_complexity Low_complexity 1 31 0 248 241 26 103 chr13 42251503 42251619 -59621550 + L3 LINE CR1 1464 1570 -7 185 382 11 0 chr13 42252634 42252723 -59620446 + L2 LINE L2 1493 1582 -1732 409 292 130 35 chr13 42253430 42253714 -59619455 + MLT1J1 LTR MaLR 21 331 -115 21 0 0 0 chr13 42253779 42253800 -59619369 + AT_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr13 42254540 42254568 -59618601 + (TG)n Simple_repeat Simple_repeat 1 28 0 2780 76 0 0 chr13 42255069 42255424 -59617745 + THE1A LTR MaLR 1 355 0 602 272 130 47 chr13 42257101 42257355 -59615814 + L3 LINE CR1 246 520 -1057 714 199 82 0 chr13 42258038 42258184 -59614985 + MER3 DNA MER1_type 48 205 -4 478 222 0 0 chr13 42258145 42258235 -59614934 - MER3 DNA MER1_type -119 90 1 * 9433 183 35 22 chr13 42259238 42261312 -59611857 - L1MA7 LINE L1 -5 6286 4239 195 42 0 0 chr13 42261312 42261336 -59611833 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 9433 183 35 22 chr13 42261336 42262103 -59611066 - L1MA7 LINE L1 -2052 4239 3396 2365 83 7 0 chr13 42262103 42262403 -59610766 - AluSc SINE Alu -5 304 3 9433 183 35 22 chr13 42262403 42262527 -59610642 - L1MA7 LINE L1 -2895 3396 3275 2132 84 3 52 chr13 42262534 42262844 -59610325 - AluSg SINE Alu -15 295 1 436 203 156 0 chr13 42264510 42264638 -59608531 - MER53 DNA DNA -2 187 40 261 330 80 35 chr13 42265039 42265239 -59607930 + MIR SINE MIR 37 245 -17 253 340 32 11 chr13 42265340 42265434 -59607735 + L2 LINE L2 3218 3313 0 28 48 0 0 chr13 42265898 42265940 -59607229 + AT_rich Low_complexity Low_complexity 1 42 0 450 367 20 14 chr13 42266654 42266917 -59606252 - MIR SINE MIR 0 262 1 325 277 60 36 chr13 42267400 42267566 -59605603 - L1MC/D LINE L1 -2333 5475 5306 204 40 0 0 chr13 42267705 42267730 -59605439 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr13 42267730 42267754 -59605415 + AT_rich Low_complexity Low_complexity 1 24 0 265 306 107 42 chr13 42267817 42268173 -59604996 - L1MC/D LINE L1 -1096 5050 4672 207 299 54 68 chr13 42268831 42268978 -59604191 + L2 LINE L2 3164 3308 -5 2195 153 5 13 chr13 42270383 42270756 -59602413 + THE1C LTR MaLR 5 374 -1 1745 169 18 70 chr13 42273126 42273510 -59599659 - MLT1A1 LTR MaLR -1 364 1 789 167 8 0 chr13 42273902 42274034 -59599135 - FLAM_C SINE Alu 0 133 1 288 263 111 20 chr13 42274132 42274231 -59598938 - MIR SINE MIR -91 171 64 588 292 20 12 chr13 42274232 42274475 -59598694 - L1M1 LINE L1 -499 5667 5452 611 270 63 58 chr13 42274477 42274840 -59598329 - MER65A LTR ERV1 -2 443 79 360 269 76 0 chr13 42274844 42274963 -59598206 - MER65A LTR ERV1 -317 128 1 640 229 20 7 chr13 42274965 42275118 -59598051 - L1ME LINE L1 -713 5453 5299 787 273 51 51 chr13 42275118 42275615 -59597554 + L1ME1 LINE L1 5663 6315 -19 222 156 0 0 chr13 42275633 42275678 -59597491 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 899 136 0 0 chr13 42277122 42277254 -59595915 + AluY SINE Alu 1 132 -179 21 0 0 0 chr13 42277254 42277275 -59595894 + AT_rich Low_complexity Low_complexity 1 21 0 1992 88 64 0 chr13 42277275 42277558 -59595611 + AluY SINE Alu 1 301 -10 349 161 0 0 chr13 42277675 42277737 -59595432 + MER114 LTR ERV 22 83 -565 3347 125 101 92 chr13 42277738 42278615 -59594554 + pTR5 LTR ERV1 833 2021 -417 311 274 10 0 chr13 42278615 42278717 -59594452 + LTR30 LTR ERV1 541 643 -79 1448 91 4 4 chr13 42278717 42278941 -59594228 + pTR5 LTR ERV1 67 392 -2046 581 250 109 18 chr13 42278941 42279217 -59593952 + MER114 LTR ERV 80 380 -268 290 139 56 42 chr13 42279295 42279367 -59593802 - MER113 DNA MER1_type? -332 189 117 875 238 15 5 chr13 42279368 42279574 -59593595 - L1PA16 LINE L1 -1866 4280 4073 5098 175 29 11 chr13 42279576 42281404 -59591765 + L1PA16 LINE L1 4271 6165 -1 473 240 54 85 chr13 42281596 42281728 -59591441 + MER114 LTR ERV 387 509 -139 2085 128 0 19 chr13 42281728 42282040 -59591129 - AluSq SINE Alu -7 306 1 473 240 54 85 chr13 42282040 42282165 -59591004 + MER114 LTR ERV 509 636 -12 28 29 0 0 chr13 42282167 42282202 -59590967 + AT_rich Low_complexity Low_complexity 1 35 0 456 19 0 0 chr13 42282364 42282417 -59590752 + (CA)n Simple_repeat Simple_repeat 2 54 0 26 30 0 0 chr13 42283412 42283445 -59589724 + AT_rich Low_complexity Low_complexity 1 33 0 2016 55 92 22 chr13 42284996 42285267 -59587902 - AluY SINE Alu -21 290 1 2185 117 10 0 chr13 42285978 42286285 -59586884 - AluSx SINE Alu -2 310 1 198 360 55 43 chr13 42286683 42286771 -59586398 + L2 LINE L2 3097 3189 -83 2308 82 16 0 chr13 42286771 42287077 -59586092 - AluY SINE Alu 0 311 1 198 360 55 43 chr13 42287077 42287152 -59586017 + L2 LINE L2 3189 3262 -10 257 75 0 25 chr13 42288545 42288585 -59584584 + MADE1 DNA Mariner 42 80 0 2104 100 13 13 chr13 42289070 42289379 -59583790 - AluSc SINE Alu 0 309 1 14211 161 21 1 chr13 42289380 42289895 -59583274 - L1PA11 LINE L1 -4 7608 7105 213 65 0 0 chr13 42289895 42289926 -59583243 + (TTATA)n Simple_repeat Simple_repeat 5 35 0 14211 161 21 1 chr13 42289926 42292811 -59580358 - L1PA11 LINE L1 -507 7105 4144 7777 229 31 32 chr13 42292813 42295826 -59577343 - L1PA11 LINE L1 -3486 4098 1 2035 139 150 8 chr13 42295836 42296210 -59576959 + MSTA LTR MaLR 2 428 0 364 345 35 0 chr13 42296211 42296356 -59576813 - MIR SINE MIR -61 201 52 2147 149 13 10 chr13 42296401 42296789 -59576380 - L1MA4 LINE L1 -1 6299 5911 200 322 0 0 chr13 42297005 42297064 -59576105 - MIR SINE MIR 0 262 204 844 231 20 40 chr13 42299241 42299440 -59573729 + Charlie1a DNA MER1_type 20 214 -1241 28 29 0 0 chr13 42299454 42299489 -59573680 + AT_rich Low_complexity Low_complexity 1 35 0 1595 229 54 19 chr13 42300212 42300622 -59572547 + MLT1D LTR MaLR 81 504 -1 24 0 0 0 chr13 42301133 42301157 -59572012 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 42301266 42301287 -59571882 + AT_rich Low_complexity Low_complexity 1 21 0 1191 259 115 17 chr13 42302409 42302869 -59570300 + MLT1D LTR MaLR 1 505 0 24 32 0 0 chr13 42303053 42303084 -59570085 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 42303370 42303393 -59569776 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr13 42303420 42303457 -59569712 + AT_rich Low_complexity Low_complexity 1 37 0 1681 154 29 7 chr13 42303645 42303963 -59569206 - AluJb SINE Alu 0 324 1 2399 77 0 6 chr13 42303979 42304292 -59568877 - AluY SINE Alu 0 311 1 257 219 114 81 chr13 42304292 42304415 -59568754 - HAL1 LINE L1 -1 2506 2380 342 269 113 38 chr13 42304468 42304654 -59568515 - L1MC4a LINE L1 -1849 5959 5760 186 143 0 0 chr13 42304656 42304691 -59568478 + (TG)n Simple_repeat Simple_repeat 2 36 0 180 77 0 0 chr13 42305289 42305315 -59567854 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 434 224 6 19 chr13 42306125 42306281 -59566888 + GA-rich Low_complexity Low_complexity 1 154 0 339 202 28 9 chr13 42306316 42306425 -59566744 + GA-rich Low_complexity Low_complexity 2 112 0 1998 194 0 6 chr13 42307846 42308206 -59564963 - MLT1A1 LTR MaLR -7 358 1 306 0 0 0 chr13 42308565 42308599 -59564570 + (TG)n Simple_repeat Simple_repeat 1 34 0 1920 121 75 0 chr13 42311809 42312091 -59561078 - AluSx SINE Alu -9 303 1 35 24 0 0 chr13 42312337 42312379 -59560790 + AT_rich Low_complexity Low_complexity 1 42 0 255 311 54 0 chr13 42314164 42314238 -59558931 + L2 LINE L2 3232 3309 -4 257 386 49 18 chr13 42314761 42314924 -59558245 - L2 LINE L2 -182 3090 2923 591 246 94 27 chr13 42315239 42315536 -59557633 - L1MEc LINE L1 -3927 2469 2153 993 171 6 6 chr13 42315548 42315724 -59557445 - L1PA16 LINE L1 -11 6155 5980 3506 147 78 17 chr13 42315827 42316516 -59556653 - L1PA16 LINE L1 -180 5986 5256 311 309 39 39 chr13 42316548 42316726 -59556443 - L1MEc LINE L1 -4187 2028 1851 452 254 67 36 chr13 42316750 42316974 -59556195 - L1MEc LINE L1 -4437 1959 1729 3292 104 0 4 chr13 42316979 42317442 -59555727 - L1PA14 LINE L1 -33 6128 5668 955 300 59 87 chr13 42317492 42318837 -59554332 - L1MEc LINE L1 -4718 1678 388 2028 135 7 0 chr13 42318837 42319140 -59554029 - AluSx SINE Alu -7 305 1 955 300 59 87 chr13 42319140 42319480 -59553689 - L1MEc LINE L1 -6008 388 40 225 196 0 0 chr13 42319546 42319592 -59553577 + (TATG)n Simple_repeat Simple_repeat 3 48 0 308 189 41 4 chr13 42319705 42319934 -59553235 + (TA)n Simple_repeat Simple_repeat 1 237 0 2441 51 0 7 chr13 42319935 42320229 -59552940 - AluY SINE Alu -19 292 1 1915 120 28 3 chr13 42320235 42320518 -59552651 - AluSx SINE Alu -22 290 1 221 357 0 0 chr13 42321555 42321625 -59551544 + MIR SINE MIR 71 140 -122 247 114 0 0 chr13 42321649 42321684 -59551485 + U2 snRNA snRNA 2 36 -152 2255 77 0 22 chr13 42321948 42322260 -59550909 + AluY SINE Alu 1 305 -6 291 322 83 33 chr13 42322362 42322483 -59550686 + L2 LINE L2 3169 3295 -18 2164 107 3 0 chr13 42324682 42324971 -59548198 - AluSq SINE Alu -23 290 1 22 0 0 0 chr13 42325793 42325815 -59547354 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr13 42326413 42326450 -59546719 + AT_rich Low_complexity Low_complexity 1 37 0 558 231 125 8 chr13 42326630 42326886 -59546283 - Charlie4a DNA MER1_type -81 427 142 422 101 43 0 chr13 42327240 42327309 -59545860 - LTR12 LTR ERV1 -61 653 582 3756 136 64 89 chr13 42327310 42328154 -59545015 - LTR12 LTR ERV1 -1 825 3 633 203 38 51 chr13 42328395 42328631 -59544538 - pTR5 LTR ERV1 -1463 975 743 347 299 95 7 chr13 42328787 42328924 -59544245 + HAL1 LINE L1 73 221 -2286 364 266 30 103 chr13 42328969 42329172 -59543997 + HAL1 LINE L1 332 519 -1988 264 100 0 0 chr13 42329437 42329477 -59543692 + (TG)n Simple_repeat Simple_repeat 2 41 0 322 263 0 42 chr13 42329486 42329581 -59543588 + L1MC4 LINE L1 6613 6703 -1339 1227 253 75 17 chr13 42329587 42330054 -59543115 + HAL1 LINE L1 984 1477 -1030 350 284 138 34 chr13 42330122 42330390 -59542779 + HAL1 LINE L1 2199 2494 -13 315 200 0 62 chr13 42330707 42330787 -59542382 + HAL1 LINE L1 1048 1122 -1385 389 147 27 0 chr13 42331754 42331829 -59541340 - L1PA15 LINE L1 -3 6162 6086 23 33 0 0 chr13 42332397 42332427 -59540742 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 42333045 42333075 -59540094 + AT_rich Low_complexity Low_complexity 1 30 0 263 220 0 0 chr13 42333134 42333184 -59539985 - L2 LINE L2 -3 3310 3261 2186 103 3 0 chr13 42333872 42334163 -59539006 - AluY SINE Alu -19 292 1 3104 90 4 29 chr13 42334828 42335283 -59537886 - MLT2A1 LTR ERVL 0 444 1 1599 240 70 29 chr13 42335956 42336725 -59536444 - L1ME LINE L1 -375 6183 5385 303 225 0 25 chr13 42336858 42336938 -59536231 - L1ME LINE L1 -1240 5300 5223 751 239 40 5 chr13 42336946 42337147 -59536022 + MER3 DNA MER1_type 2 209 0 302 239 276 0 chr13 42337160 42337294 -59535875 - L1ME LINE L1 -1332 5208 5038 718 196 34 14 chr13 42337307 42337455 -59535714 - FRAM SINE Alu -14 152 2 801 182 0 0 chr13 42337513 42337645 -59535524 + AluSc SINE Alu 145 276 -33 1061 244 95 112 chr13 42337645 42338478 -59534691 - L1ME LINE L1 -1538 5002 4184 307 234 28 97 chr13 42338683 42338828 -59534341 - L1ME LINE L1 -3957 2583 2449 28 0 0 0 chr13 42339038 42339066 -59534103 + AT_rich Low_complexity Low_complexity 1 28 0 379 266 107 62 chr13 42339181 42339482 -59533687 - L1M4c LINE L1 -809 1934 1406 2021 169 116 0 chr13 42339516 42339895 -59533274 + MSTA LTR MaLR 1 423 -5 29 28 0 0 chr13 42340089 42340125 -59533044 + AT_rich Low_complexity Low_complexity 1 36 0 1030 168 118 14 chr13 42340125 42340345 -59532824 - L1PA16 LINE L1 -16 6150 5908 2181 113 62 9 chr13 42340738 42341074 -59532095 - THE1B LTR MaLR -2 362 9 1445 164 34 3 chr13 42341093 42341385 -59531784 + L1MC3 LINE L1 7456 7756 -29 2527 53 0 0 chr13 42341385 42341687 -59531482 - AluY SINE Alu -9 302 1 25 51 0 0 chr13 42341687 42341726 -59531443 + AT_rich Low_complexity Low_complexity 1 39 0 1388 198 24 44 chr13 42343635 42343928 -59529241 + AluJo SINE Alu 2 288 -24 232 396 58 0 chr13 42344101 42344240 -59528929 - L3 LINE CR1 -1 1576 1430 295 237 32 122 chr13 42344325 42344481 -59528688 - MER46C DNA MER2_type -175 163 22 23 0 0 0 chr13 42344755 42344778 -59528391 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr13 42345224 42345249 -59527920 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr13 42345840 42345872 -59527297 + AT_rich Low_complexity Low_complexity 1 32 0 360 167 39 50 chr13 42346038 42346218 -59526951 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 856 340 61 19 chr13 42346312 42346688 -59526481 + L2 LINE L2 47 438 -2876 482 277 96 55 chr13 42346712 42346932 -59526237 + L2 LINE L2 2892 3120 -193 240 299 16 79 chr13 42347016 42347143 -59526026 - L2 LINE L2 -6 3307 3189 972 194 20 0 chr13 42347609 42347805 -59525364 + L1PB1 LINE L1 1 200 -6663 7167 96 57 11 chr13 42347807 42349402 -59523767 + L1PB1 LINE L1 636 2480 -4383 1378 126 0 0 chr13 42349402 42349600 -59523569 - THE1A LTR MaLR 0 355 158 6329 158 15 5 chr13 42349600 42351757 -59521412 + L1PB1 LINE L1 4679 6857 -10 2496 53 3 0 chr13 42351759 42352059 -59521110 - AluY SINE Alu -10 301 1 238 296 17 34 chr13 42352352 42352483 -59520686 - MIR SINE MIR -9 199 76 890 199 0 6 chr13 42352658 42352819 -59520350 - FRAM SINE Alu -6 160 1 602 187 7 7 chr13 42353861 42354000 -59519169 - L1MA7 LINE L1 -11 6280 6142 22 88 0 0 chr13 42355900 42355957 -59517212 + AT_rich Low_complexity Low_complexity 1 57 0 26 30 0 0 chr13 42356972 42357005 -59516164 + AT_rich Low_complexity Low_complexity 1 33 0 2223 105 3 0 chr13 42357269 42357565 -59515604 + AluSx SINE Alu 1 297 -15 1622 223 0 0 chr13 42357812 42358112 -59515057 + AluJb SINE Alu 1 300 -12 224 320 60 47 chr13 42358324 42358474 -59514695 - L2 LINE L2 0 3313 3162 349 302 39 8 chr13 42358696 42358825 -59514344 + MIR SINE MIR 77 209 -53 332 308 73 50 chr13 42359092 42359421 -59513748 - MLT1J2 LTR MaLR -19 390 40 231 260 0 0 chr13 42359912 42359962 -59513207 + L2 LINE L2 3263 3312 -1 * 297 358 93 27 chr13 42359955 42360363 -59512806 - L2 LINE L2 -483 2831 2397 3164 147 42 43 chr13 42360712 42361310 -59511859 - LTR1 LTR ERV1 0 785 189 1504 153 17 17 chr13 42361298 42361585 -59511584 - LTR1 LTR ERV1 -498 287 1 * 1647 141 8 0 chr13 42361628 42361869 -59511300 - HUERS-P2 LTR ERV1 0 3088 2846 * 5273 132 20 4 chr13 42361867 42362657 -59510512 - HUERS-P2 LTR ERV1 -1068 2020 1218 4088 133 60 0 chr13 42362660 42363919 -59509250 - pTR5 LTR ERV1 0 2468 1524 * 4391 190 74 38 chr13 42363916 42365034 -59508135 - HUERS-P2 LTR ERV1 -1867 1221 5 3761 131 39 89 chr13 42365037 42365864 -59507305 - LTR1 LTR ERV1 0 785 1 7531 29 0 0 chr13 42366039 42367159 -59506010 - L1PA4 LINE L1 0 6155 5033 290 263 20 61 chr13 42367771 42367870 -59505299 - MIR SINE MIR -50 212 118 288 306 12 50 chr13 42368034 42368197 -59504972 + L1MB2 LINE L1 173 503 -5800 6275 142 31 15 chr13 42368505 42368631 -59504538 + L1M1 LINE L1 4125 4248 -2057 327 49 0 0 chr13 42368631 42368672 -59504497 + (CA)n Simple_repeat Simple_repeat 1 41 0 6275 142 31 15 chr13 42368672 42370105 -59503064 + L1M1 LINE L1 4248 5719 -586 3139 239 41 91 chr13 42370125 42371928 -59501241 + L1MB2 LINE L1 777 2417 -3965 1969 145 7 0 chr13 42371928 42372218 -59500951 + AluSg SINE Alu 1 292 -18 3139 239 41 91 chr13 42372218 42372841 -59500328 + L1MB2 LINE L1 2417 3070 -3312 1590 220 67 14 chr13 42372844 42373399 -59499770 + L1MB2 LINE L1 3126 3709 -2673 2206 133 104 8 chr13 42373399 42373783 -59499386 + MSTA LTR MaLR 1 421 -7 1646 251 15 0 chr13 42373785 42374184 -59498985 + L1MB2 LINE L1 3706 4110 -2272 409 252 50 29 chr13 42374414 42374553 -59498616 - LTR43 LTR ERV1 -306 296 155 3815 240 24 14 chr13 42374726 42375801 -59497368 + L1MB2 LINE L1 4106 5191 -1191 1467 221 94 8 chr13 42375806 42376199 -59496970 + MLT2B2 LTR ERVL 1 427 -88 2876 187 31 8 chr13 42376204 42376878 -59496291 + L1MB2 LINE L1 5394 6086 -321 703 224 80 0 chr13 42376879 42377080 -59496089 + L1MB2 LINE L1 6188 6404 -3 377 333 31 25 chr13 42377591 42377750 -59495419 + MER5A DNA MER1_type 30 189 0 801 220 133 82 chr13 42377823 42377982 -59495187 - MLT1D LTR MaLR -6 499 350 2157 107 7 0 chr13 42377982 42378287 -59494882 - AluSx SINE Alu 0 307 1 801 220 133 82 chr13 42378287 42378510 -59494659 - MLT1D LTR MaLR -155 350 1 237 65 0 0 chr13 42378521 42378552 -59494617 + (CA)n Simple_repeat Simple_repeat 2 32 0 3025 147 33 2 chr13 42378711 42379195 -59493974 - MER41E LTR ERV1 0 512 14 180 111 0 0 chr13 42380575 42380602 -59492567 + (CATAT)n Simple_repeat Simple_repeat 4 30 0 455 303 87 13 chr13 42381781 42382012 -59491157 + MIR SINE MIR 2 249 -13 3966 101 13 0 chr13 42382389 42382934 -59490235 - MER41A LTR ERV1 0 554 3 205 161 0 0 chr13 42383284 42383315 -59489854 + A-rich Low_complexity Low_complexity 4 34 0 24 32 0 0 chr13 42384666 42384697 -59488472 + AT_rich Low_complexity Low_complexity 1 31 0 319 278 110 21 chr13 42384712 42384903 -59488266 - L1MDa LINE L1 -5103 1437 1230 2229 143 8 6 chr13 42385772 42386135 -59487034 - MER47A DNA MER2_type 0 366 3 25 0 0 0 chr13 42387588 42387613 -59485556 + AT_rich Low_complexity Low_complexity 1 25 0 1558 138 47 108 chr13 42387937 42388299 -59484870 - MER67D LTR ERV1 -174 340 1 183 288 9 81 chr13 42389904 42390015 -59483154 - L2 LINE L2 0 3313 3211 301 291 159 54 chr13 42392105 42392363 -59480806 + L1ME LINE L1 5543 5827 -294 1643 173 30 0 chr13 42392484 42392755 -59480414 + AluJb SINE Alu 5 283 -29 25 51 0 0 chr13 42392756 42392795 -59480374 + AT_rich Low_complexity Low_complexity 1 39 0 202 358 211 18 chr13 42394526 42394811 -59478358 + L2 LINE L2 2850 3189 -124 1202 187 88 3 chr13 42396040 42396334 -59476835 + L1MC3 LINE L1 7459 7777 -8 212 0 36 0 chr13 42397143 42397171 -59475998 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 256 255 69 29 chr13 42397793 42397895 -59475274 + MLT1J LTR MaLR 37 142 -369 678 243 276 15 chr13 42398305 42398735 -59474434 - MLT1G LTR MaLR -68 522 1 234 289 67 29 chr13 42398745 42398953 -59474216 + L1 LINE L1 2382 2597 -3549 289 264 67 63 chr13 42399119 42399403 -59473766 + L1 LINE L1 2725 3009 -3137 413 159 65 0 chr13 42399570 42399708 -59473461 + (TA)n Simple_repeat Simple_repeat 1 147 0 766 102 45 44 chr13 42399711 42400227 -59472942 + (TTATA)n Simple_repeat Simple_repeat 1 516 0 331 67 103 18 chr13 42400194 42400359 -59472810 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 509 43 105 12 chr13 42400380 42400542 -59472627 + (TA)n Simple_repeat Simple_repeat 1 177 0 198 0 0 0 chr13 42400665 42400687 -59472482 + (GA)n Simple_repeat Simple_repeat 1 22 0 327 291 150 9 chr13 42400718 42400931 -59472238 + L1 LINE L1 3289 3531 -2615 247 259 40 88 chr13 42400975 42401249 -59471920 + L1 LINE L1 4552 4812 -1334 262 227 93 0 chr13 42401292 42401367 -59471802 + L1 LINE L1 4909 4990 -1156 439 296 91 51 chr13 42401562 42401957 -59471212 + L1ME LINE L1 5257 5667 -495 24 0 0 0 chr13 42402421 42402445 -59470724 + AT_rich Low_complexity Low_complexity 1 24 0 227 281 0 18 chr13 42404133 42404190 -59468979 - L2 LINE L2 -49 3223 3168 324 336 152 48 chr13 42404513 42404979 -59468190 - L2 LINE L2 -241 3072 2553 2141 102 0 0 chr13 42405247 42405532 -59467637 - AluSg SINE Alu -3 307 23 188 275 0 0 chr13 42406642 42406682 -59466487 + L2 LINE L2 2796 2835 -479 278 352 78 8 chr13 42406872 42407000 -59466169 + L2 LINE L2 3100 3236 -36 2105 168 35 30 chr13 42407106 42407654 -59465515 + MLT2A2 LTR ERVL 1 554 0 1285 140 0 0 chr13 42408359 42408566 -59464603 + L1M1 LINE L1 5407 5613 -690 1125 180 35 0 chr13 42408567 42408795 -59464374 - L1 LINE L1 -743 6105 5870 616 203 0 0 chr13 42408794 42408912 -59464257 - L1 LINE L1 -1516 5332 5215 * 2278 181 20 23 chr13 42408914 42409401 -59463768 - L1 LINE L1 -2474 4374 3889 * 9550 193 65 42 chr13 42409399 42411590 -59461579 - L1 LINE L1 -4609 2240 1 285 250 104 47 chr13 42411736 42411928 -59461241 - L2 LINE L2 0 3313 3111 25 31 0 0 chr13 42412284 42412316 -59460853 + AT_rich Low_complexity Low_complexity 1 32 0 288 213 30 110 chr13 42415834 42415998 -59457171 + MER112 DNA MER1_type 73 223 -37 23 33 0 0 chr13 42416052 42416082 -59457087 + AT_rich Low_complexity Low_complexity 1 30 0 22 80 0 0 chr13 42416368 42416418 -59456751 + AT_rich Low_complexity Low_complexity 1 50 0 1705 82 116 8 chr13 42417275 42417542 -59455627 - AluSc SINE Alu -13 296 1 932 253 58 14 chr13 42417699 42417976 -59455193 + L1MDa LINE L1 34 322 -6218 385 318 107 39 chr13 42418307 42418587 -59454582 - L2 LINE L2 -47 3266 2968 1198 290 303 19 chr13 42418614 42419453 -59453716 - L2 LINE L2 -451 2863 1787 602 270 57 0 chr13 42419508 42419667 -59453502 - MIR SINE MIR -14 248 81 4053 206 99 4 chr13 42421076 42422540 -59450629 + L1MB2 LINE L1 4500 6124 -47 245 285 39 18 chr13 42422680 42422810 -59450359 - MIR SINE MIR -66 142 33 220 371 8 53 chr13 42423063 42423195 -59449974 - MIR SINE MIR -63 145 20 1872 136 24 3 chr13 42423557 42423852 -59449317 - AluSq SINE Alu -11 302 2 333 153 0 0 chr13 42423908 42423980 -59449189 + CT-rich Low_complexity Low_complexity 2 73 0 25 0 0 0 chr13 42424320 42424345 -59448824 + AT_rich Low_complexity Low_complexity 1 25 0 681 278 80 55 chr13 42425980 42426419 -59446750 + MLT1J2 LTR MaLR 1 450 0 229 360 102 21 chr13 42426461 42426786 -59446383 + L2 LINE L2 706 1056 -2258 316 355 59 5 chr13 42426844 42427047 -59446122 + L2 LINE L2 1197 1410 -1904 276 157 0 0 chr13 42427178 42427229 -59445940 - MER53 DNA DNA 0 189 139 526 140 11 0 chr13 42427292 42427385 -59445784 - MER53 DNA DNA -67 122 29 261 0 0 0 chr13 42427393 42427422 -59445747 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 493 326 129 29 chr13 42427649 42428170 -59444999 + L2 LINE L2 1825 2397 -917 761 167 132 78 chr13 42429054 42429258 -59443911 - MER20 DNA MER1_type -4 215 1 1201 170 17 42 chr13 42430325 42430566 -59442603 - AluJb SINE Alu -77 235 1 412 324 190 22 chr13 42431440 42432071 -59441098 + L2 LINE L2 2554 3313 0 207 0 0 0 chr13 42432151 42432174 -59440995 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 266 241 11 0 chr13 42432222 42432309 -59440860 + GA-rich Low_complexity Low_complexity 1 88 0 2427 136 38 84 chr13 42432851 42433480 -59439689 - MER4B LTR ERV1 0 766 1 361 250 74 14 chr13 42433594 42433810 -59439359 - MER20B DNA MER1_type -7 776 548 1811 178 85 52 chr13 42433984 42434467 -59438702 - MLT1D LTR MaLR -4 501 3 678 310 212 13 chr13 42434469 42435002 -59438167 - L2 LINE L2 -1884 1430 792 216 0 0 0 chr13 42435145 42435169 -59438000 + (A)n Simple_repeat Simple_repeat 1 24 0 2011 200 21 0 chr13 42435218 42435593 -59437576 + MLT1B LTR MaLR 8 390 0 370 342 15 40 chr13 42435596 42435795 -59437374 - L2 LINE L2 -3033 281 88 377 295 54 0 chr13 42437289 42437418 -59435751 + MIR SINE MIR 119 254 -8 26 50 0 0 chr13 42437432 42437472 -59435697 + AT_rich Low_complexity Low_complexity 1 40 0 3371 111 16 14 chr13 42438922 42439427 -59433742 - MER84 LTR ERV1 0 507 2 380 153 42 14 chr13 42439427 42439499 -59433670 - MER84 LTR ERVI -433 74 1 517 294 6 6 chr13 42440061 42440224 -59432945 - MER52A LTR ERV1 0 1755 1593 * 1022 264 129 55 chr13 42440216 42440926 -59432243 - MER52A LTR ERV1 -147 489 3 274 314 38 0 chr13 42440981 42441091 -59432078 - MIR SINE MIR -58 150 56 495 67 67 0 chr13 42441598 42441673 -59431496 - MADE1 DNA Mariner 0 80 1 25 65 0 0 chr13 42441713 42441759 -59431410 + AT_rich Low_complexity Low_complexity 1 46 0 242 362 94 24 chr13 42441875 42442002 -59431167 - L2 LINE L2 0 3272 3137 312 320 40 7 chr13 42442062 42442212 -59430957 + L2 LINE L2 2486 2640 -674 209 384 13 33 chr13 42442230 42442381 -59430788 - L2 LINE L2 -153 3119 2972 4215 113 2 0 chr13 42443492 42444102 -59429067 - L1PA15 LINE L1 -1 6164 5554 491 321 183 43 chr13 42444525 42445079 -59428090 + L2 LINE L2 2241 2893 -421 213 39 0 0 chr13 42445079 42445105 -59428064 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 491 321 183 43 chr13 42445105 42445172 -59427997 + L2 LINE L2 2893 2949 -365 307 298 84 66 chr13 42445180 42445512 -59427657 - L1M4 LINE L1 -3025 3121 2784 185 100 50 0 chr13 42446276 42446316 -59426853 + T-rich Low_complexity Low_complexity 6 47 0 1945 96 81 0 chr13 42446781 42447052 -59426117 + AluSx SINE Alu 3 295 -17 277 373 93 24 chr13 42447743 42447990 -59425179 - L3 LINE CR1 -60 1517 1254 357 255 128 14 chr13 42448014 42448155 -59425014 - MER117 DNA MER1_type 0 197 41 22 0 0 0 chr13 42448179 42448201 -59424968 + AT_rich Low_complexity Low_complexity 1 22 0 378 287 16 41 chr13 42448278 42448400 -59424769 + MLT1I LTR MaLR 97 215 -194 290 347 56 56 chr13 42448564 42448901 -59424268 - L2 LINE L2 0 3313 2977 2486 59 0 7 chr13 42448950 42449257 -59423912 + AluY SINE Alu 1 305 -6 1550 351 153 18 chr13 42449303 42450993 -59422176 - L2 LINE L2 -541 2773 856 238 372 25 25 chr13 42451219 42451340 -59421829 - L3 LINE CR1 -393 1184 1064 332 391 31 0 chr13 42451539 42451667 -59421502 - MIR SINE MIR -118 144 13 229 254 0 18 chr13 42451805 42451860 -59421309 + L2 LINE L2 3255 3308 -5 * 514 328 174 10 chr13 42451859 42452249 -59420920 - L3 LINE CR1 -865 712 259 1831 170 21 24 chr13 42452505 42452881 -59420288 + THE1C LTR MaLR 1 375 0 2299 176 38 46 chr13 42453059 42453106 -59420063 - L1MA8 LINE L1 0 6291 6245 1881 141 171 8 chr13 42453106 42453474 -59419695 - MSTA LTR MaLR 0 428 1 2299 176 38 46 chr13 42453474 42453551 -59419618 - L1MA8 LINE L1 -46 6245 6169 5755 154 38 48 chr13 42453551 42454800 -59418369 + MER11B LTR ERVK 1 1236 0 2299 176 38 46 chr13 42454800 42455221 -59417948 - L1MA8 LINE L1 -122 6169 5749 2977 127 50 0 chr13 42455222 42455704 -59417465 + L1MA8 LINE L1 5254 5759 -532 23 54 0 0 chr13 42461335 42461372 -59411797 + AT_rich Low_complexity Low_complexity 1 37 0 3930 125 129 103 chr13 42461595 42463058 -59410111 - pTR5 LTR ERV1 0 2438 741 27 49 0 0 chr13 42464791 42464832 -59408337 + AT_rich Low_complexity Low_complexity 1 41 0 189 219 134 61 chr13 42465696 42465778 -59407391 - MIR SINE MIR -54 208 121 21 0 0 0 chr13 42466544 42466565 -59406604 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 42467480 42467500 -59405669 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 808 147 0 8 chr13 42468018 42468147 -59405022 - AluSq/x SINE Alu -182 131 4 236 328 144 23 chr13 42468263 42468437 -59404732 + L3 LINE CR1 1175 1369 -208 253 218 61 51 chr13 42468524 42468683 -59404486 + MIR SINE MIR 32 246 -16 2380 82 0 10 chr13 42468683 42468989 -59404180 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr13 42469005 42469027 -59404142 + AT_rich Low_complexity Low_complexity 1 22 0 270 235 29 0 chr13 42471085 42471153 -59402016 - MER103 DNA DNA -63 103 34 220 175 18 18 chr13 42471199 42471256 -59401913 + (TATAA)n Simple_repeat Simple_repeat 2 58 0 527 324 89 0 chr13 42471256 42471469 -59401700 - MIR SINE MIR -30 232 1 32 0 0 0 chr13 42471858 42471890 -59401279 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 42471979 42472000 -59401169 + AT_rich Low_complexity Low_complexity 1 21 0 207 114 0 0 chr13 42472246 42472281 -59400888 + (TG)n Simple_repeat Simple_repeat 2 36 0 334 429 51 7 chr13 42472411 42472686 -59400483 - L2 LINE L2 -559 2755 2469 1279 218 20 82 chr13 42472686 42472793 -59400376 + MLT1A2 LTR MaLR 1 113 -261 2035 97 4 0 chr13 42472793 42473060 -59400109 + AluSp SINE Alu 33 300 -13 1279 218 20 82 chr13 42473060 42473212 -59399957 + MLT1A2 LTR MaLR 113 231 -143 2297 154 3 3 chr13 42473212 42473576 -59399593 + THE1B LTR MaLR 1 364 0 1279 218 20 82 chr13 42473576 42473705 -59399464 + MLT1A2 LTR MaLR 231 366 -8 265 350 36 36 chr13 42473722 42473862 -59399307 - L2 LINE L2 -846 2468 2329 1119 276 107 40 chr13 42474248 42474791 -59398378 - MLT1K LTR MaLR -8 580 2 26 30 0 0 chr13 42475593 42475626 -59397543 + AT_rich Low_complexity Low_complexity 1 33 0 346 313 0 0 chr13 42475805 42475904 -59397265 + L2 LINE L2 3215 3313 0 225 0 0 0 chr13 42476520 42476545 -59396624 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr13 42476878 42476900 -59396269 + AT_rich Low_complexity Low_complexity 1 22 0 243 337 10 20 chr13 42478832 42478930 -59394239 + MIR3 SINE MIR 58 154 -54 1937 93 10 58 chr13 42478936 42479247 -59393922 - AluSg SINE Alu -14 296 1 705 266 35 46 chr13 42479313 42479345 -59393824 + MIR SINE MIR 7 38 -224 1345 184 71 4 chr13 42479345 42479645 -59393524 - AluJb SINE Alu 0 318 1 705 266 35 46 chr13 42479645 42479870 -59393299 + MIR SINE MIR 38 262 0 211 246 53 0 chr13 42479891 42479948 -59393221 - L3b LINE CR1 -194 1389 1330 204 195 24 49 chr13 42480587 42480669 -59392500 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 2244 118 0 6 chr13 42480843 42481157 -59392012 + AluSx SINE Alu 1 312 0 292 305 107 23 chr13 42481684 42481861 -59391308 + MIR3 SINE MIR 10 201 -7 270 224 13 40 chr13 42483822 42483898 -59389271 - MIR3 SINE MIR -5 203 130 1485 169 28 0 chr13 42484707 42484997 -59388172 - L1MA8 LINE L1 0 6291 5994 16577 95 10 4 chr13 42485802 42489028 -59384141 - L1PA7 LINE L1 0 6154 2914 219 139 0 0 chr13 42490478 42490514 -59382655 + (TA)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr13 42490536 42490564 -59382605 + AT_rich Low_complexity Low_complexity 1 28 0 228 284 0 62 chr13 42491781 42491862 -59381307 + L2 LINE L2 3237 3312 -1 225 94 0 0 chr13 42492257 42492289 -59380880 + (TC)n Simple_repeat Simple_repeat 1 32 0 243 0 0 0 chr13 42492309 42492336 -59380833 + (TG)n Simple_repeat Simple_repeat 2 28 0 350 204 0 0 chr13 42492337 42492391 -59380778 - AluJ/FRAM SINE Alu -21 281 228 1834 170 118 18 chr13 42492432 42492821 -59380348 + MSTA LTR MaLR 1 428 0 202 269 75 119 chr13 42493175 42493309 -59379860 - L2 LINE L2 -211 3061 2934 2165 180 13 40 chr13 42494018 42494491 -59378678 - L1MB7 LINE L1 0 6184 5725 2145 111 0 3 chr13 42494671 42494991 -59378178 - AluSg SINE Alu 0 310 1 321 297 77 28 chr13 42495275 42495457 -59377712 + L2 LINE L2 1905 2095 -1219 3382 86 9 57 chr13 42495521 42496045 -59377124 - MER41A LTR ERV1 0 554 56 184 373 20 0 chr13 42496052 42496154 -59377015 + L2 LINE L2 2164 2267 -1047 849 246 69 20 chr13 42496195 42496304 -59376865 - LTR40a LTR ERVL -2 517 415 1510 192 69 0 chr13 42496304 42496621 -59376548 - MER44D DNA MER2_type 0 609 1 849 246 69 20 chr13 42496621 42496827 -59376342 - LTR40a LTR ERVL -104 415 139 21 0 0 0 chr13 42499331 42499352 -59373817 + AT_rich Low_complexity Low_complexity 1 21 0 225 319 106 18 chr13 42500405 42500518 -59372651 - L2 LINE L2 -5 3308 3186 1477 76 0 0 chr13 42501312 42501509 -59371660 - L1PA5 LINE L1 -109 6045 5849 276 253 23 11 chr13 42501777 42501864 -59371305 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 195 146 0 0 chr13 42502457 42502498 -59370671 + (TTG)n Simple_repeat Simple_repeat 2 42 0 252 246 18 0 chr13 42503211 42503268 -59369901 + MIR3 SINE MIR 146 203 -5 411 73 0 0 chr13 42503393 42503448 -59369721 + (CA)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chr13 42503530 42503552 -59369617 + AT_rich Low_complexity Low_complexity 1 22 0 564 289 52 24 chr13 42503560 42503771 -59369398 - MIR SINE MIR -10 252 36 1841 145 8 33 chr13 42503794 42504401 -59368768 - LTR8 LTR ERV1 0 691 1 1692 253 48 33 chr13 42504832 42505315 -59367854 - MLT1E LTR MaLR 0 593 104 346 141 14 0 chr13 42505326 42505385 -59367784 + MER34C LTR ERV1 12 99 -465 8914 101 71 43 chr13 42505659 42506042 -59367127 - L1P3 LINE L1 -3521 2940 2569 2488 80 0 0 chr13 42506042 42506353 -59366816 - AluY SINE Alu 0 311 1 8914 101 71 43 chr13 42506353 42508077 -59365092 - L1P3 LINE L1 -3892 2569 686 1073 178 6 0 chr13 42508098 42508272 -59364897 - AluJb SINE Alu -24 288 114 314 291 34 63 chr13 42508983 42509189 -59363980 - L2 LINE L2 0 3313 3114 279 0 0 0 chr13 42509433 42509464 -59363705 + (CA)n Simple_repeat Simple_repeat 2 32 0 237 312 55 34 chr13 42509668 42509960 -59363209 - L1M4 LINE L1 -1566 4580 4283 25 31 0 0 chr13 42510304 42510336 -59362833 + AT_rich Low_complexity Low_complexity 1 32 0 32 67 0 0 chr13 42510433 42510493 -59362676 + AT_rich Low_complexity Low_complexity 1 60 0 634 201 16 46 chr13 42511837 42512031 -59361138 - MER53 DNA DNA 0 189 2 230 265 132 0 chr13 42513092 42513160 -59360009 + L2 LINE L2 3142 3218 -54 822 89 12 0 chr13 42513160 42513329 -59359840 + LTR12 LTR ERV1 1 285 -429 270 264 0 0 chr13 42513330 42513402 -59359767 + LTR30 LTR ERV1 553 624 -98 1793 86 18 0 chr13 42513404 42513651 -59359518 + LTR12 LTR ERV1 51 714 0 192 121 0 0 chr13 42513662 42513695 -59359474 + L2 LINE L2 3280 3312 -1 22 21 0 62 chr13 42513992 42514040 -59359129 + AT_rich Low_complexity Low_complexity 1 45 0 1999 138 26 32 chr13 42514719 42515096 -59358073 + THE1C LTR MaLR 1 375 0 264 299 19 9 chr13 42515946 42516053 -59357116 + L1ME LINE L1 5732 5839 -282 21 36 0 0 chr13 42516082 42516110 -59357059 + AT_rich Low_complexity Low_complexity 1 28 0 780 251 15 20 chr13 42516179 42516382 -59356787 - MIR SINE MIR -15 247 46 222 271 0 0 chr13 42518182 42518241 -59354928 + (CA)n Simple_repeat Simple_repeat 2 60 0 34 0 0 0 chr13 42520271 42520305 -59352864 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr13 42520976 42520998 -59352171 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr13 42521191 42521213 -59351956 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2035 118 11 3 chr13 42521220 42521507 -59351662 - AluSq SINE Alu -24 289 1 249 217 87 29 chr13 42521776 42521914 -59351255 + L1ME LINE L1 5255 5400 -2408 1280 184 7 149 chr13 42521914 42522232 -59350937 + MLT1A2 LTR MaLR 1 242 -132 1889 173 3 10 chr13 42522232 42522545 -59350624 + AluJb SINE Alu 2 312 0 1280 184 7 149 chr13 42522545 42522662 -59350507 + MLT1A2 LTR MaLR 242 374 0 2206 216 32 48 chr13 42522716 42523432 -59349737 + MER21B LTR ERV1 98 852 -11 307 308 91 35 chr13 42523691 42523834 -59349335 + L1ME LINE L1 5523 5673 -448 336 264 24 24 chr13 42525110 42525235 -59347934 + HAL1b LINE L1 225 349 -999 473 329 107 24 chr13 42525251 42525683 -59347486 + L1M4 LINE L1 3423 3888 -2258 180 0 0 0 chr13 42526508 42526528 -59346641 + (T)n Simple_repeat Simple_repeat 1 20 0 2037 103 3 13 chr13 42527194 42527494 -59345675 - AluSc SINE Alu -10 299 3 203 167 0 0 chr13 42527502 42527538 -59345631 + T-rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr13 42527977 42528003 -59345166 + AT_rich Low_complexity Low_complexity 1 26 0 29 0 0 0 chr13 42528503 42528532 -59344637 + AT_rich Low_complexity Low_complexity 1 29 0 22482 31 0 0 chr13 42528532 42529035 -59344134 - L1PA2 LINE L1 -2 6153 5652 227 77 0 26 chr13 42529035 42529074 -59344095 + (TA)n Simple_repeat Simple_repeat 1 38 0 22482 31 0 0 chr13 42529074 42532080 -59341089 - L1PA2 LINE L1 -503 5652 2661 1459 121 152 8 chr13 42632080 42632337 -59240832 - AluSq SINE Alu -9 294 1 843 275 43 102 chr13 42632352 42632843 -59240326 + MLT1F1 LTR MaLR 72 533 -34 230 132 44 15 chr13 42633098 42633166 -59240003 + (TA)n Simple_repeat Simple_repeat 2 71 0 1502 293 70 37 chr13 42633264 42633828 -59239341 + HAL1 LINE L1 1106 1705 -802 1365 250 43 3 chr13 42633828 42634156 -59239013 - MER58B DNA MER1_type 0 341 1 1502 293 70 37 chr13 42634156 42634374 -59238795 + HAL1 LINE L1 1705 1914 -593 200 182 45 0 chr13 42634497 42634541 -59238628 + A-rich Low_complexity Low_complexity 5 50 0 354 191 59 0 chr13 42634649 42634717 -59238452 - Tigger5 DNA MER2_type -5 2318 2247 * 430 203 0 13 chr13 42634712 42634791 -59238378 + Tigger5 DNA MER2_type 2242 2319 -4 343 182 15 15 chr13 42634792 42634858 -59238311 - Tigger5 DNA MER2_type -2245 78 13 408 256 64 30 chr13 42634885 42635088 -59238081 + HAL1 LINE L1 2036 2245 -262 306 273 27 9 chr13 42635095 42635205 -59237964 + HAL1 LINE L1 2285 2396 -111 694 303 73 38 chr13 42635514 42635857 -59237312 + L2 LINE L2 2941 3295 -18 313 309 264 0 chr13 42636630 42636808 -59236361 + L1ME4a LINE L1 5355 5579 -542 22 0 0 0 chr13 42636882 42636904 -59236265 + AT_rich Low_complexity Low_complexity 1 22 0 1683 175 3 18 chr13 42636964 42637274 -59235895 + AluJo SINE Alu 1 306 0 296 250 45 9 chr13 42637281 42637393 -59235776 + L1ME4a LINE L1 5765 5880 -241 539 304 98 10 chr13 42638419 42638613 -59234556 - MIR SINE MIR -16 246 36 2210 138 39 14 chr13 42639026 42639381 -59233788 - THE1B LTR MaLR 0 364 1 11577 100 4 2 chr13 42639381 42640958 -59232211 - THE1B-int LTR MaLR 0 1580 1 1408 143 45 22 chr13 42640960 42641183 -59231986 - THE1B LTR MaLR -12 352 125 4460 180 76 10 chr13 42643359 42644116 -59229053 + L1MA4 LINE L1 5101 5968 -332 267 54 0 0 chr13 42644116 42644153 -59229016 + (CA)n Simple_repeat Simple_repeat 2 38 0 4460 180 76 10 chr13 42644153 42644486 -59228683 + L1MA4 LINE L1 5968 6277 -23 979 272 87 54 chr13 42645000 42645540 -59227629 + MLT2E LTR ERVL 6 626 -2 2076 105 27 17 chr13 42645769 42646065 -59227104 + AluSx SINE Alu 2 300 -12 1342 223 69 25 chr13 42646566 42646929 -59226240 - MLT1B LTR MaLR -11 379 1 4802 182 14 1 chr13 42648603 42649584 -59223585 - L1PB4 LINE L1 -1 6155 5162 836 210 54 73 chr13 42649587 42649901 -59223268 + L1PB4 LINE L1 4852 5159 -987 797 280 60 27 chr13 42650636 42650934 -59222235 + L1MCa LINE L1 572 848 -5197 450 218 78 53 chr13 42650930 42651173 -59221996 + L1MCa LINE L1 1300 1548 -5016 * 940 297 16 16 chr13 42651186 42651621 -59221548 + L1M4 LINE L1 3197 3631 -2515 646 216 7 0 chr13 42651625 42651773 -59221396 + L1M4 LINE L1 4798 4946 -1200 9284 148 26 37 chr13 42651809 42653049 -59220120 - Tigger1 DNA MER2_type 0 2418 1202 1946 162 0 0 chr13 42653049 42653351 -59219818 + AluSq SINE Alu 1 302 -11 9284 148 26 37 chr13 42653351 42653822 -59219347 - Tigger1 DNA MER2_type -1216 1202 727 222 62 0 0 chr13 42653836 42653868 -59219301 + (TTA)n Simple_repeat Simple_repeat 3 34 0 17878 30 3 1 chr13 42653868 42656776 -59216393 - L1PA3 LINE L1 -18 6137 3226 4654 23 2 2 chr13 42656776 42657346 -59215823 + L1PA3 LINE L1 2649 3218 -2928 3066 159 25 0 chr13 42657358 42657886 -59215283 - Tigger1 DNA MER2_type -1693 725 185 4542 314 111 39 chr13 42658178 42658656 -59214513 - L2 LINE L2 -1 3312 2870 351 0 0 0 chr13 42658656 42658695 -59214474 + (TA)n Simple_repeat Simple_repeat 1 39 0 4542 314 111 39 chr13 42658695 42659726 -59213443 - L2 LINE L2 -443 2870 1915 2237 68 21 4 chr13 42659726 42660006 -59213163 - AluY SINE Alu -26 285 1 4542 314 111 39 chr13 42660006 42660239 -59212930 - L2 LINE L2 -1398 1915 1700 249 33 0 0 chr13 42660239 42660269 -59212900 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4542 314 111 39 chr13 42660269 42661574 -59211595 - L2 LINE L2 -1613 1700 36 28 48 0 0 chr13 42663218 42663260 -59209909 + AT_rich Low_complexity Low_complexity 1 42 0 232 233 178 14 chr13 42663723 42663796 -59209373 - MIR SINE MIR -10 252 168 355 278 35 9 chr13 42664342 42664457 -59208712 + MLT1J1 LTR MaLR 2 119 -327 2191 306 233 6 chr13 42665024 42666205 -59206964 - L2 LINE L2 -1341 1973 525 2721 146 20 2 chr13 42666206 42666665 -59206504 + L1P LINE L1 3856 4322 -1824 505 193 46 0 chr13 42666673 42666782 -59206387 - MLT1C LTR MaLR -353 114 1 590 201 97 8 chr13 42666825 42666959 -59206210 - MLT1C LTR MaLR -316 151 6 1585 112 0 0 chr13 42667151 42667365 -59205804 + AluSx SINE Alu 1 214 -98 907 281 97 32 chr13 42667547 42667917 -59205252 - L1MCb LINE L1 -5596 449 56 234 324 159 6 chr13 42668457 42668627 -59204542 + MIR SINE MIR 67 262 0 218 317 24 37 chr13 42670138 42670220 -59202949 + MIR SINE MIR 51 131 -131 267 315 60 27 chr13 42670402 42670551 -59202618 + MIR SINE MIR 36 189 -73 262 385 50 0 chr13 42671567 42671728 -59201441 + L2 LINE L2 1261 1429 -1885 6457 25 0 1 chr13 42672427 42673181 -59199988 + L1PA3 LINE L1 5403 6155 0 414 353 32 11 chr13 42676164 42676354 -59196815 + MIR SINE MIR 43 236 -26 222 246 43 14 chr13 42676426 42676495 -59196674 - MIR SINE MIR -74 188 118 200 371 56 11 chr13 42676626 42676715 -59196454 + L2 LINE L2 3137 3229 -43 21 89 0 0 chr13 42677619 42677675 -59195494 + AT_rich Low_complexity Low_complexity 1 56 0 893 266 118 45 chr13 42677987 42678307 -59194862 + L1ME3A LINE L1 5520 5815 -355 1557 192 89 9 chr13 42678307 42678645 -59194524 - MLT1A1 LTR MaLR 0 365 1 893 266 118 45 chr13 42678645 42678919 -59194250 + L1ME3A LINE L1 5815 6158 -12 555 266 46 110 chr13 42679100 42679601 -59193568 - MLT1J LTR MaLR -1 510 42 29 0 0 0 chr13 42679808 42679837 -59193332 + AT_rich Low_complexity Low_complexity 1 29 0 214 386 94 0 chr13 42680217 42680344 -59192825 + L2 LINE L2 3134 3272 0 337 297 107 30 chr13 42680454 42680761 -59192408 + MLT1J2 LTR MaLR 94 386 -23 741 233 70 51 chr13 42681121 42681336 -59191833 - MER20 DNA MER1_type 0 219 1 33 25 0 0 chr13 42682070 42682110 -59191059 + AT_rich Low_complexity Low_complexity 1 40 0 203 235 39 0 chr13 42682736 42682787 -59190382 + L2 LINE L2 3256 3308 -5 2010 135 39 33 chr13 42684694 42685056 -59188113 - THE1B LTR MaLR 0 364 1 11207 113 1 1 chr13 42685056 42686634 -59186535 - THE1B-int LTR MaLR 0 1580 2 1517 147 52 130 chr13 42686635 42687042 -59186127 - THE1C LTR MaLR 0 375 1 234 346 12 0 chr13 42687462 42687543 -59185626 - L2 LINE L2 0 3313 3232 261 0 0 0 chr13 42688456 42688485 -59184684 + (TTG)n Simple_repeat Simple_repeat 2 30 0 255 333 122 8 chr13 42689023 42689146 -59184023 + MIR SINE MIR 11 147 -115 25 75 0 0 chr13 42689558 42689611 -59183558 + AT_rich Low_complexity Low_complexity 1 53 0 245 87 0 22 chr13 42689626 42689672 -59183497 + (TA)n Simple_repeat Simple_repeat 1 45 0 180 0 0 0 chr13 42691028 42691048 -59182121 + (T)n Simple_repeat Simple_repeat 1 20 0 496 192 0 115 chr13 42692437 42692567 -59180602 - L2 LINE L2 -6 3307 3193 32 57 0 0 chr13 42692577 42692630 -59180539 + AT_rich Low_complexity Low_complexity 1 53 0 4552 138 11 15 chr13 42692637 42693390 -59179779 + L1PA15 LINE L1 5413 6162 -3 550 319 112 28 chr13 42693716 42694481 -59178688 - HAL1 LINE L1 -800 1707 878 230 194 28 28 chr13 42695395 42695467 -59177702 + (TA)n Simple_repeat Simple_repeat 1 72 0 1793 113 0 33 chr13 42696003 42696277 -59176892 + AluSq SINE Alu 1 265 -48 519 263 32 0 chr13 42696569 42696755 -59176414 + L1ME LINE L1 5258 5449 -713 * 6034 113 2 0 chr13 42696753 42697627 -59175542 - L1P LINE L1 -1378 4768 3893 1394 143 0 0 chr13 42697624 42697854 -59175315 - L1P LINE L1 -1705 4441 4212 * 2632 178 22 20 chr13 42697922 42698423 -59174746 - MER67C LTR ERV1 -208 502 1 5295 198 50 8 chr13 42698615 42699805 -59173364 - L1 LINE L1 -911 5235 3995 2586 117 31 8 chr13 42699806 42700198 -59172971 - LTR9 LTR ERV1 0 612 212 581 308 181 23 chr13 42700826 42701258 -59171911 - L2 LINE L2 -5 3308 2809 345 299 45 140 chr13 42701370 42701583 -59171586 - L2 LINE L2 -512 2802 2570 2089 127 3 0 chr13 42701583 42701891 -59171278 + AluSg SINE Alu 1 309 -1 345 299 45 140 chr13 42701891 42702224 -59170945 - L2 LINE L2 -744 2570 2310 3443 118 31 6 chr13 42702224 42702550 -59170619 + MER41C LTR ERV1 1 348 -206 189 0 0 0 chr13 42702550 42702571 -59170598 + (TA)n Simple_repeat Simple_repeat 1 21 0 3443 118 31 6 chr13 42702571 42702784 -59170385 + MER41C LTR ERV1 348 554 0 345 299 45 140 chr13 42702784 42702807 -59170362 - L2 LINE L2 -1004 2310 2286 3837 88 24 0 chr13 42703894 42704429 -59168740 - MER41A LTR ERV1 -6 548 1 332 326 28 7 chr13 42705259 42705403 -59167766 - MER69 DNA AcHobo -2379 147 1 2178 112 0 3 chr13 42705657 42705952 -59167217 + AluSg SINE Alu 1 294 -16 4193 196 6 7 chr13 42706044 42706994 -59166175 - L1MA9 LINE L1 -14 6298 5254 230 162 0 0 chr13 42706992 42707029 -59166140 + L1 LINE L1 3952 3988 -2158 * 530 81 0 0 chr13 42707038 42707112 -59166057 + LTR9 LTR ERV1 1 74 -538 5109 187 36 10 chr13 42708027 42709562 -59163607 - L1MA8 LINE L1 -3 6288 4725 2680 141 95 8 chr13 42709742 42710225 -59162944 + L1PA16 LINE L1 5635 6159 -7 2228 90 0 20 chr13 42710271 42710570 -59162599 + AluY SINE Alu 2 294 -17 295 351 43 22 chr13 42710860 42711045 -59162124 - ERVL LTR ERVL -1215 4549 4361 271 332 116 42 chr13 42711206 42711516 -59161653 - ERVL LTR ERVL -2541 3223 2891 4830 151 65 53 chr13 42711647 42711733 -59161436 - pTR5 LTR ERV1 0 2438 2354 1981 94 38 7 chr13 42711733 42712021 -59161148 + AluY SINE Alu 1 297 -14 4830 151 65 53 chr13 42712021 42713324 -59159845 - pTR5 LTR ERV1 -84 2354 742 926 331 82 59 chr13 42713327 42714415 -59158754 - ERVL LTR ERVL -3030 2734 1622 270 56 0 0 chr13 42714750 42714786 -59158383 + (TG)n Simple_repeat Simple_repeat 2 37 0 395 181 147 35 chr13 42714830 42714946 -59158223 - MER5B DNA MER1_type -35 143 15 499 301 146 48 chr13 42716727 42717139 -59156030 - ERVL LTR ERVL -1303 4461 4010 371 138 35 0 chr13 42717146 42717204 -59155965 - AluJ/FLAM SINE Alu -229 73 14 817 100 0 0 chr13 42717257 42717367 -59155802 + AluJb SINE Alu 24 133 -179 2208 113 3 0 chr13 42717577 42717887 -59155282 + AluSq SINE Alu 3 313 0 303 323 20 0 chr13 42717890 42717989 -59155180 - ERVL LTR ERVL -2020 3744 3644 3003 220 137 22 chr13 42718351 42719470 -59153699 - L1MDa LINE L1 -4269 2271 1025 180 111 0 0 chr13 42719602 42719629 -59153540 + (TA)n Simple_repeat Simple_repeat 1 27 0 353 219 34 0 chr13 42719677 42719796 -59153373 + (TA)n Simple_repeat Simple_repeat 2 124 0 303 186 14 0 chr13 42719796 42719866 -59153303 - L1MB3 LINE L1 -28 6155 6085 * 2796 299 71 16 chr13 42719865 42720832 -59152337 - L1MDa LINE L1 -5502 1038 19 415 314 25 38 chr13 42720975 42721134 -59152035 - MIR SINE MIR -105 157 1 22 0 0 0 chr13 42721986 42722008 -59151161 + AT_rich Low_complexity Low_complexity 1 22 0 312 295 26 0 chr13 42722032 42722188 -59150981 + (TA)n Simple_repeat Simple_repeat 2 161 0 204 158 0 0 chr13 42722222 42722260 -59150909 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 208 156 0 78 chr13 42722313 42722377 -59150792 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 22 0 0 0 chr13 42724327 42724349 -59148820 + AT_rich Low_complexity Low_complexity 1 22 0 183 325 0 100 chr13 42724375 42724495 -59148674 - L2 LINE L2 -47 3266 3159 691 225 0 0 chr13 42725627 42725756 -59147413 - MER94 DNA DNA 0 134 6 203 204 19 0 chr13 42725852 42725906 -59147263 + (TA)n Simple_repeat Simple_repeat 1 55 0 28 29 0 0 chr13 42726962 42726997 -59146172 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr13 42727021 42727049 -59146120 + AT_rich Low_complexity Low_complexity 1 28 0 615 226 22 0 chr13 42727605 42727742 -59145427 + LTR8A LTR ERV1 1 140 -587 6996 20 0 1 chr13 42727742 42728575 -59144594 - L1PA4 LINE L1 -940 5206 4375 7577 27 0 0 chr13 42728575 42729523 -59143646 + L1PA4 LINE L1 5205 6152 -3 1094 174 0 15 chr13 42729541 42729737 -59143432 + LTR8 LTR ERV1 117 309 -382 2094 163 24 21 chr13 42729784 42730165 -59143004 + LTR8 LTR ERV1 310 691 0 2313 172 64 9 chr13 42730256 42730693 -59142476 - LOR1b LTR ERV1 0 461 1 229 338 79 44 chr13 42731025 42731253 -59141916 - MIR SINE MIR 0 262 27 23 0 0 0 chr13 42732035 42732058 -59141111 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr13 42732522 42732547 -59140622 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr13 42733435 42733476 -59139693 + AT_rich Low_complexity Low_complexity 1 41 0 244 294 8 17 chr13 42733820 42733939 -59139230 + (TA)n Simple_repeat Simple_repeat 2 119 0 1565 181 122 20 chr13 42733939 42734445 -59138724 + MLT2A2 LTR ERVL 1 554 0 268 229 18 11 chr13 42734446 42734726 -59138443 + (TA)n Simple_repeat Simple_repeat 1 282 0 50 14 0 28 chr13 42734726 42734774 -59138395 + AT_rich Low_complexity Low_complexity 1 48 -22 1986 149 0 0 chr13 42734774 42735063 -59138106 + AluSx SINE Alu 1 289 -23 50 14 0 28 chr13 42735063 42735086 -59138083 + AT_rich Low_complexity Low_complexity 48 70 0 308 262 24 12 chr13 42735086 42735250 -59137919 + (TTATA)n Simple_repeat Simple_repeat 5 170 0 * 350 202 45 34 chr13 42735249 42735427 -59137742 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 307 240 41 12 chr13 42735392 42735563 -59137606 + (TTATA)n Simple_repeat Simple_repeat 4 179 0 * 298 227 36 9 chr13 42735538 42735648 -59137521 + (TA)n Simple_repeat Simple_repeat 1 113 0 * 22 70 0 0 chr13 42736214 42736257 -59136912 + AT_rich Low_complexity Low_complexity 1 43 0 297 0 0 0 chr13 42736722 42736755 -59136414 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 1418 172 44 7 chr13 42736771 42736935 -59136234 - AluSx SINE Alu -3 309 128 1009 13 57 6 chr13 42736935 42737093 -59136076 + (TTTTA)n Simple_repeat Simple_repeat 2 167 0 1418 172 44 7 chr13 42737093 42737224 -59135945 - AluSx SINE Alu -184 128 3 463 291 96 59 chr13 42737302 42737790 -59135379 + L1ME LINE L1 5317 5822 -348 678 162 0 0 chr13 42737896 42738001 -59135168 - Tigger1 DNA MER2_type -1 2417 2313 4086 177 20 8 chr13 42738033 42738917 -59134252 - L1MC1 LINE L1 -293 6040 5149 500 278 28 17 chr13 42739036 42739212 -59133957 - L1ME LINE L1 -381 5789 5612 480 234 170 32 chr13 42739311 42739537 -59133632 - MER31B LTR ERV1 -244 241 15 246 290 96 52 chr13 42739547 42739871 -59133298 - L1ME LINE L1 -579 5591 5254 495 137 14 0 chr13 42739917 42739990 -59133179 - MER2 DNA MER2_type -270 75 2 21 71 0 0 chr13 42740567 42740609 -59132560 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr13 42743343 42743371 -59129798 + AT_rich Low_complexity Low_complexity 1 28 0 817 213 6 6 chr13 42743811 42743975 -59129194 + FRAM SINE Alu 1 164 -12 312 322 49 7 chr13 42744239 42744382 -59128787 - MIR SINE MIR -14 248 100 23 0 0 0 chr13 42744947 42744970 -59128199 + AT_rich Low_complexity Low_complexity 1 23 0 526 281 152 0 chr13 42746022 42746186 -59126983 - MIR3 SINE MIR -1 207 19 2358 98 0 0 chr13 42746450 42746755 -59126414 + AluSx SINE Alu 1 305 -7 309 282 10 19 chr13 42747459 42747562 -59125607 - L1ME LINE L1 -1550 4596 4495 351 239 0 0 chr13 42747591 42747679 -59125490 + (TA)n Simple_repeat Simple_repeat 1 88 0 691 250 22 9 chr13 42747679 42747903 -59125266 - L1ME LINE L1 -1704 4442 4216 22 35 0 0 chr13 42748065 42748094 -59125075 + AT_rich Low_complexity Low_complexity 1 29 0 318 50 0 0 chr13 42748423 42748463 -59124706 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 0 0 0 chr13 42748464 42748484 -59124685 + (GA)n Simple_repeat Simple_repeat 1 20 0 600 340 68 0 chr13 42748718 42748953 -59124216 + MIR SINE MIR 8 258 -4 458 264 138 13 chr13 42749455 42749614 -59123555 - MER5A DNA MER1_type 0 189 11 21 0 0 0 chr13 42750320 42750341 -59122828 + AT_rich Low_complexity Low_complexity 1 21 0 2463 216 49 13 chr13 42750475 42751087 -59122082 - L1MD3 LINE L1 -9 7986 7353 321 136 25 25 chr13 42751185 42751266 -59121903 + CT-rich Low_complexity Low_complexity 4 84 0 321 296 32 17 chr13 42751582 42751764 -59121405 - L1MCc LINE L1 -5889 533 8 378 91 0 0 chr13 42752830 42752885 -59120284 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr13 42753955 42753976 -59119193 + AT_rich Low_complexity Low_complexity 1 21 0 2134 76 44 0 chr13 42755832 42756107 -59117062 + AluY SINE Alu 1 287 -24 1483 205 90 116 chr13 42756275 42756960 -59116209 + LTR28 LTR ERV1 105 966 -54 460 236 8 55 chr13 42757015 42757142 -59116027 + LTR28 LTR ERV1 900 1020 0 1461 215 0 27 chr13 42758503 42758801 -59114368 + AluJb SINE Alu 6 295 -17 27 29 0 0 chr13 42759171 42759205 -59113964 + AT_rich Low_complexity Low_complexity 1 34 0 227 230 8 79 chr13 42759777 42759903 -59113266 + L1M4 LINE L1 5127 5243 -903 633 239 0 22 chr13 42759911 42760064 -59113105 + FLAM_A SINE Alu 1 133 0 374 113 0 14 chr13 42760087 42760158 -59113011 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 1539 164 6 61 chr13 42760805 42761117 -59112052 + AluJb SINE Alu 7 301 -11 29 75 0 21 chr13 42761240 42761311 -59111858 + AT_rich Low_complexity Low_complexity 1 71 -20 1888 201 45 2 chr13 42761311 42761714 -59111455 - L1MA6 LINE L1 0 6300 5881 29 75 0 21 chr13 42761714 42761735 -59111434 + AT_rich Low_complexity Low_complexity 71 91 0 190 343 108 20 chr13 42762672 42762774 -59110395 - L2 LINE L2 -199 3073 2963 2087 123 19 13 chr13 42765725 42766035 -59107134 + AluSx SINE Alu 1 312 0 233 380 0 0 chr13 42766293 42766364 -59106805 - L3 LINE CR1 -477 1100 1030 296 329 113 9 chr13 42766380 42766428 -59106741 - MIR SINE MIR -15 247 205 577 281 108 16 chr13 42766428 42766734 -59106435 + MER46C DNA MER2_type 5 338 0 296 329 113 9 chr13 42766734 42766780 -59106389 - MIR SINE MIR -57 205 165 2286 111 13 49 chr13 42766780 42767167 -59106002 - THE1C LTR MaLR -2 373 1 296 329 113 9 chr13 42767167 42767284 -59105885 - MIR SINE MIR -97 165 13 2080 52 8 0 chr13 42767560 42767827 -59105342 - L1PA7 LINE L1 0 6154 5886 230 336 26 35 chr13 42768549 42768665 -59104504 - L2 LINE L2 0 3313 3199 540 256 0 28 chr13 42768984 42769160 -59104009 - L1MEc LINE L1 -3647 2568 2398 3914 220 21 21 chr13 42769176 42773086 -59100083 - L1PB4 LINE L1 -3 7591 3487 703 310 57 63 chr13 42773118 42773644 -59099525 - L1PB4 LINE L1 -6421 1164 11 1263 282 101 42 chr13 42773660 42775173 -59097996 - L1MEc LINE L1 -3965 2431 829 33 0 0 0 chr13 42775306 42775339 -59097830 + AT_rich Low_complexity Low_complexity 1 33 0 336 270 157 22 chr13 42775717 42775902 -59097267 - L1MEc LINE L1 -5859 346 137 25 31 0 0 chr13 42776196 42776228 -59096941 + AT_rich Low_complexity Low_complexity 1 32 0 219 263 0 0 chr13 42777405 42777462 -59095707 + T-rich Low_complexity Low_complexity 1 57 0 2146 108 0 3 chr13 42778284 42778580 -59094589 - AluSg SINE Alu -15 295 1 30 93 0 0 chr13 42778721 42778807 -59094362 + AT_rich Low_complexity Low_complexity 1 86 0 253 368 63 0 chr13 42778844 42778939 -59094230 + L2 LINE L2 2897 2997 -316 1790 229 11 42 chr13 42779276 42779753 -59093416 + MLT1D LTR MaLR 42 503 -2 615 263 108 80 chr13 42779863 42780390 -59092779 - L1ME LINE L1 -351 5811 5268 326 261 171 25 chr13 42780402 42780601 -59092568 - L1ME LINE L1 -913 5233 5006 733 245 68 32 chr13 42780651 42780900 -59092269 - L1MA4 LINE L1 -6 6294 6037 406 269 178 11 chr13 42781068 42781332 -59091837 - L1ME LINE L1 -1346 4800 4493 354 284 81 56 chr13 42781761 42782046 -59091123 + MLT1I LTR MaLR 116 407 -2 576 113 0 0 chr13 42782507 42782587 -59090582 + MADE1 DNA Mariner 1 80 0 504 217 116 92 chr13 42883834 42884041 -58989128 + L2 LINE L2 3094 3305 -8 1093 208 200 31 chr13 42884044 42884437 -58988732 + LTR50 LTR ERVL 9 334 -461 1127 132 65 115 chr13 42884437 42884777 -58988392 - MER33 DNA MER1_type -1 323 1 1093 208 200 31 chr13 42884777 42884977 -58988192 + LTR50 LTR ERVL 334 794 -1 188 117 0 67 chr13 42887240 42887272 -58985897 + (A)n Simple_repeat Simple_repeat 1 29 -27 1931 62 0 0 chr13 42887272 42887513 -58985656 + AluY SINE Alu 1 241 -70 188 117 0 67 chr13 42887513 42887540 -58985629 + (A)n Simple_repeat Simple_repeat 29 56 0 242 246 18 0 chr13 42889133 42889190 -58983979 - L2 LINE L2 -4 3268 3211 2525 83 3 0 chr13 42889409 42889757 -58983412 + L1PA13 LINE L1 5814 6162 -1 3043 149 19 2 chr13 42889757 42890282 -58982887 + L1 LINE L1 4406 4939 -1207 25 31 0 0 chr13 42891260 42891292 -58981877 + AT_rich Low_complexity Low_complexity 1 32 0 527 209 31 118 chr13 42891643 42891897 -58981272 - L1MC4 LINE L1 -1 8041 7810 605 220 254 48 chr13 42891976 42892244 -58980925 - MER5C DNA MER1_type 0 324 2 1824 274 71 40 chr13 42892320 42893218 -58979951 - L1MC4 LINE L1 -408 7634 6644 1424 267 31 29 chr13 42894254 42894848 -58978321 + L1MCa LINE L1 4 484 -5561 2934 239 101 14 chr13 42894901 42895900 -58977269 + L1M4 LINE L1 3118 4203 -1943 1963 214 49 26 chr13 42895900 42896658 -58976511 - L1ME LINE L1 -539 5627 4853 231 203 0 0 chr13 42896860 42896924 -58976245 + A-rich Low_complexity Low_complexity 1 64 0 219 190 0 0 chr13 42896983 42897041 -58976128 + A-rich Low_complexity Low_complexity 1 58 0 219 263 0 0 chr13 42897073 42897130 -58976039 + A-rich Low_complexity Low_complexity 1 57 0 2476 213 35 20 chr13 42897157 42897753 -58975416 + L1MD2 LINE L1 5725 6329 -30 180 309 0 18 chr13 42897867 42897922 -58975247 + MIR SINE MIR 196 249 -13 629 263 90 64 chr13 42897981 42898338 -58974831 + L2 LINE L2 2936 3301 -12 1846 160 39 21 chr13 42899449 42899780 -58973389 + MER1B DNA MER1_type 1 337 0 2972 198 30 27 chr13 42899868 42900529 -58972640 - LTR8A LTR ERV1 0 727 65 * 3087 198 65 12 chr13 42900524 42901216 -58971953 - MER50 LTR ERV1 -5 729 1 503 123 0 12 chr13 42901216 42901295 -58971874 - LTR8A LTR ERV1 -649 78 1 621 242 31 31 chr13 42901761 42901922 -58971247 + MER45A DNA AcHobo 18 178 0 2756 7 0 0 chr13 42902055 42902356 -58970813 + AluYa5 SINE Alu 1 301 -10 2122 121 0 3 chr13 42902570 42902860 -58970309 + AluSx SINE Alu 1 289 -23 370 339 71 52 chr13 42902996 42903696 -58969473 + HAL1b LINE L1 517 1125 -641 2770 155 54 29 chr13 42904071 42904702 -58968467 + LTR48B LTR ERV1 1 704 -3 301 295 48 17 chr13 42905464 42905691 -58967478 + L1M4 LINE L1 3804 4047 -2099 2229 121 3 0 chr13 42906244 42906550 -58966619 + AluSq SINE Alu 2 308 -5 3725 150 16 0 chr13 42906606 42907220 -58965949 + MER41B LTR ERV1 4 627 -8 1736 154 7 4 chr13 42907414 42907693 -58965476 + AluJb SINE Alu 1 280 -32 26 30 0 0 chr13 42907844 42907877 -58965292 + AT_rich Low_complexity Low_complexity 1 33 0 278 299 47 0 chr13 42908620 42908747 -58964422 + L1ME LINE L1 5734 5866 -255 2962 97 41 47 chr13 42908864 42909484 -58963685 - MER4B LTR ERV1 0 779 15 2050 131 26 7 chr13 42909484 42909790 -58963379 - AluSx SINE Alu 0 312 1 2962 97 41 47 chr13 42909790 42909805 -58963364 - MER4B LTR ERV1 -764 15 1 1083 169 11 5 chr13 42910633 42910817 -58962352 + AluJo SINE Alu 3 187 -125 772 111 8 0 chr13 42910917 42911034 -58962135 - L1PA8 LINE L1 -173 5999 5882 472 281 97 39 chr13 42911060 42911568 -58961601 + L1ME4a LINE L1 5574 6110 -11 326 267 73 7 chr13 42912372 42912522 -58960647 + L2 LINE L2 1700 1859 -1455 22 35 0 0 chr13 42913220 42913249 -58959920 + AT_rich Low_complexity Low_complexity 1 29 0 265 258 16 0 chr13 42914321 42914383 -58958786 - MIR3 SINE MIR -7 201 139 665 292 14 39 chr13 42915298 42915579 -58957590 - MER93a LTR ERV1 0 402 129 2887 128 31 8 chr13 42915583 42916170 -58956999 + L1M2 LINE L1 5152 5747 -544 264 359 84 21 chr13 42917195 42917337 -58955832 + L2 LINE L2 3122 3272 0 25 31 0 0 chr13 42917380 42917412 -58955757 + AT_rich Low_complexity Low_complexity 1 32 0 239 262 24 48 chr13 42917596 42917680 -58955489 + MIR SINE MIR 111 192 -70 596 170 9 0 chr13 42918638 42918744 -58954425 + MLT2B1 LTR ERVL 414 520 0 21 0 0 0 chr13 42919073 42919094 -58954075 + AT_rich Low_complexity Low_complexity 1 21 0 1796 163 0 13 chr13 42919184 42919484 -58953685 - AluSx SINE Alu -16 296 1 2011 107 45 63 chr13 42919879 42920261 -58952908 - THE1C LTR MaLR 0 375 1 1418 189 21 104 chr13 42920745 42921121 -58952048 + MLT1A1 LTR MaLR 21 365 0 1355 285 65 30 chr13 42921128 42921655 -58951514 - MLT1H LTR MaLR -2 547 3 1140 268 93 59 chr13 42923008 42923501 -58949668 - MLT1H LTR MaLR 0 549 40 1648 221 36 36 chr13 42924292 42924735 -58948434 + MLT1C LTR MaLR 1 443 -24 1387 220 156 32 chr13 42924765 42925235 -58947934 - MER34 LTR ERV1 0 542 24 360 0 0 0 chr13 42926231 42926271 -58946898 + (CA)n Simple_repeat Simple_repeat 2 41 0 395 298 216 18 chr13 42926296 42926514 -58946655 + MIR SINE MIR 1 261 -1 27 0 0 0 chr13 42927129 42927156 -58946013 + AT_rich Low_complexity Low_complexity 1 27 0 2121 119 0 3 chr13 42927259 42927544 -58945625 - AluSc SINE Alu -25 284 1 401 318 101 0 chr13 42927918 42928107 -58945062 + MLT1I LTR MaLR 11 218 -191 477 305 29 29 chr13 42928567 42928777 -58944392 + MLT1I LTR MaLR 198 407 -2 23 33 0 0 chr13 42928938 42928968 -58944201 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr13 42929242 42929284 -58943885 + AT_rich Low_complexity Low_complexity 1 42 0 225 242 48 0 chr13 42929506 42929568 -58943601 - L2 LINE L2 -213 3059 2995 335 87 0 0 chr13 42929641 42929687 -58943482 + MADE1 DNA Mariner 34 79 -1 303 127 0 0 chr13 42930958 42931021 -58942148 + (A)n Simple_repeat Simple_repeat 1 63 0 210 258 96 39 chr13 42931033 42931178 -58941991 + MIR SINE MIR 37 189 -73 1951 130 3 17 chr13 42931191 42931551 -58941618 + AluSx SINE Alu 1 356 0 257 272 204 10 chr13 42932467 42932570 -58940599 - MIR SINE MIR -58 150 28 273 283 81 20 chr13 42933251 42933350 -58939819 + MIR SINE MIR 145 249 -13 1643 197 71 111 chr13 42933394 42934057 -58939112 + L1MD2 LINE L1 5716 6350 -9 2175 51 0 0 chr13 42934632 42934887 -58938282 + AluY SINE Alu 1 255 -56 693 193 234 11 chr13 42935353 42935618 -58937551 - MER5C DNA MER1_type 0 324 1 2255 100 0 0 chr13 42937269 42937560 -58935609 - AluSx SINE Alu -21 291 1 30 0 0 0 chr13 42937563 42937593 -58935576 + AT_rich Low_complexity Low_complexity 1 30 0 3502 128 15 36 chr13 42937599 42938064 -58935105 - L1MA5 LINE L1 -3 6297 5824 1979 109 13 48 chr13 42938064 42938375 -58934794 - AluSq SINE Alu -11 302 3 3502 128 15 36 chr13 42938375 42938426 -58934743 - L1MA5 LINE L1 -476 5824 5773 234 62 0 0 chr13 42938426 42938458 -58934711 + (TA)n Simple_repeat Simple_repeat 2 33 0 690 182 91 45 chr13 42938464 42938646 -58934523 - FRAM SINE Alu 0 166 5 3502 128 15 36 chr13 42938646 42938778 -58934391 - L1MA5 LINE L1 -532 5768 5655 204 158 0 0 chr13 42939384 42939422 -58933747 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 529 176 46 30 chr13 42939774 42939905 -58933264 + L1MA8 LINE L1 6058 6190 -101 551 114 57 0 chr13 42939959 42940064 -58933105 + L1MA8 LINE L1 6181 6291 0 1671 173 32 0 chr13 42940078 42940356 -58932813 + AluJb SINE Alu 1 287 -25 604 270 139 9 chr13 42940475 42940705 -58932464 + MIR SINE MIR 3 262 0 222 394 56 19 chr13 42941285 42941501 -58931668 + L3 LINE CR1 190 413 -1164 414 198 103 0 chr13 42942964 42943080 -58930089 + L1MC4 LINE L1 6922 7049 -993 1087 254 164 28 chr13 42943121 42943652 -58929517 + L1MC4 LINE L1 7242 7844 -198 1363 132 0 10 chr13 42943828 42944033 -58929136 + AluSx SINE Alu 5 207 -105 234 0 0 0 chr13 42944931 42944957 -58928212 + (A)n Simple_repeat Simple_repeat 1 26 0 2352 65 0 39 chr13 42945512 42945819 -58927350 + AluY SINE Alu 16 310 -1 337 327 183 51 chr13 42947226 42948219 -58924950 - L2 LINE L2 -657 2657 1430 2381 92 0 13 chr13 42948219 42948534 -58924635 + AluY SINE Alu 1 311 0 337 327 183 51 chr13 42948534 42948914 -58924255 - L2 LINE L2 -1884 1430 1102 723 312 137 22 chr13 42949991 42950841 -58922328 - L2 LINE L2 -4 3309 2375 1898 203 30 140 chr13 42951857 42952517 -58920652 + L1MC4a LINE L1 6283 6855 -953 2219 84 0 0 chr13 42952517 42952812 -58920357 - AluSc SINE Alu 0 299 5 1898 203 30 140 chr13 42952812 42952893 -58920276 + L1MC4a LINE L1 6855 6943 -865 495 101 13 0 chr13 42953196 42953275 -58919894 - MADE1 DNA Mariner 0 80 1 1232 169 5 10 chr13 42953757 42953964 -58919205 - AluJo SINE Alu -106 206 1 295 233 151 115 chr13 42954438 42954717 -58918452 - L2 LINE L2 0 3313 3025 817 273 138 15 chr13 42954719 42955118 -58918051 + MLT1L LTR MaLR 168 615 0 1895 160 3 19 chr13 42955613 42955926 -58917243 - AluJb SINE Alu -3 309 2 2186 244 54 16 chr13 42955993 42956571 -58916598 + MLT1E2 LTR MaLR 25 624 -2 554 241 226 19 chr13 42956754 42957020 -58916149 - MLT1H LTR MaLR 0 549 229 1972 172 31 18 chr13 42957105 42957489 -58915680 - MLT1B LTR MaLR 0 390 2 881 254 9 5 chr13 42957659 42957879 -58915290 + MER58A DNA MER1_type 2 222 -2 338 351 23 52 chr13 42960852 42961026 -58912143 + MER91A DNA MER1_type 28 196 0 2375 81 10 3 chr13 42961468 42961776 -58911393 + AluSp SINE Alu 1 310 -3 1742 149 89 0 chr13 42962970 42963286 -58909883 - MER2 DNA MER2_type 0 344 1 195 200 25 25 chr13 42963286 42963326 -58909843 - L2 LINE L2 -18 3295 3256 * 284 267 46 61 chr13 42963301 42963432 -58909737 - MIR SINE MIR -27 235 107 861 266 28 48 chr13 42963743 42963991 -58909178 - MIR SINE MIR 0 262 20 196 368 93 15 chr13 42964393 42964597 -58908572 + MIR SINE MIR 29 248 -14 2296 100 6 10 chr13 42964951 42965262 -58907907 + AluSg SINE Alu 1 310 0 205 320 100 0 chr13 42965872 42965972 -58907197 - L2 LINE L2 -2 3311 3202 2484 151 24 19 chr13 42966663 42967087 -58906082 + MSTB LTR MaLR 1 426 0 287 330 220 5 chr13 42967836 42968045 -58905124 - MIR SINE MIR -6 256 3 2110 75 55 38 chr13 42968233 42968346 -58904823 + AluY SINE Alu 6 116 -195 2385 77 3 0 chr13 42968346 42968656 -58904513 + AluY SINE Alu 1 311 0 2110 75 55 38 chr13 42968656 42968835 -58904334 + AluY SINE Alu 116 303 -8 25 0 0 0 chr13 42970060 42970085 -58903084 + AT_rich Low_complexity Low_complexity 1 25 0 2916 116 34 9 chr13 42971272 42971308 -58901861 - MLT2A2 LTR ERVL 0 453 419 225 0 0 0 chr13 42971308 42971333 -58901836 + (CA)n Simple_repeat Simple_repeat 2 26 0 2916 116 34 9 chr13 42971333 42971736 -58901433 - MLT2A2 LTR ERVL -34 419 3 1071 231 49 0 chr13 42971910 42972135 -58901034 - MIR SINE MIR -4 258 23 235 323 134 55 chr13 42972474 42972691 -58900478 + L2 LINE L2 3037 3270 -2 189 178 0 0 chr13 42973311 42973356 -58899813 + (CA)n Simple_repeat Simple_repeat 2 46 0 386 117 17 0 chr13 42974287 42974347 -58898822 - U7 snRNA snRNA -2 61 1 353 256 186 26 chr13 42974512 42974668 -58898501 - MER5A DNA MER1_type 0 189 9 180 352 39 16 chr13 42974968 42975096 -58898073 + L2 LINE L2 3137 3267 -5 381 318 60 7 chr13 42975590 42975741 -58897428 + MIR SINE MIR 32 190 -72 2602 231 92 13 chr13 42975861 42976064 -58897105 - MER21B LTR ERV1 -15 848 662 2323 70 0 0 chr13 42976064 42976381 -58896788 + AluY SINE Alu 1 317 0 2602 231 92 13 chr13 42976381 42976872 -58896297 - MER21B LTR ERV1 -201 662 98 392 235 12 0 chr13 42976982 42977067 -58896102 - MER21B LTR ERV1 -773 90 5 828 207 11 6 chr13 42978693 42978872 -58894297 + MER3 DNA MER1_type 1 180 -29 1391 161 9 0 chr13 42979009 42979262 -58893907 - AluSx SINE Alu 0 316 62 216 281 171 0 chr13 42979432 42979514 -58893655 + L3b LINE CR1 1348 1443 -140 12558 222 45 18 chr13 42979643 42980274 -58892895 - L1MB1 LINE L1 -5 5987 5374 1836 90 41 0 chr13 42980274 42980518 -58892651 - AluSq SINE Alu -16 297 44 12558 222 45 18 chr13 42980518 42985366 -58887803 - L1MB1 LINE L1 -618 5374 390 294 95 0 48 chr13 42985436 42985499 -58887670 + (TTC)n Simple_repeat Simple_repeat 1 60 0 335 289 13 40 chr13 42985579 42985731 -58887438 - L1MB1 LINE L1 -5487 404 257 297 381 0 40 chr13 42985800 42985973 -58887196 - L1M3de LINE L1 -5219 1434 1269 491 348 19 0 chr13 42985984 42986191 -58886978 - L1MB1 LINE L1 -5679 212 2 1507 185 118 14 chr13 42986292 42986648 -58886521 - MLT2C1 LTR ERVL -3 394 2 335 315 31 8 chr13 42986676 42986806 -58886363 - MIR3 SINE MIR -4 204 72 3968 164 94 11 chr13 42987041 42987803 -58885366 - LTR1B LTR ERV1 0 826 1 474 224 0 0 chr13 42988989 42989087 -58884082 - MER5A DNA MER1_type -83 106 9 239 290 130 0 chr13 42989142 42989242 -58883927 - MIR SINE MIR -50 212 100 317 303 119 0 chr13 42990899 42991008 -58882161 - MER5A DNA MER1_type 0 189 68 * 428 263 119 0 chr13 42991000 42991160 -58882009 - MIR3 SINE MIR -15 193 15 440 274 178 6 chr13 42991192 42991349 -58881820 - MER5A DNA MER1_type -2 187 4 2160 96 10 7 chr13 42991890 42992191 -58880978 + AluY SINE Alu 2 303 -8 1522 151 0 8 chr13 42992190 42992429 -58880740 + AluSg/x SINE Alu 74 310 0 * 339 282 150 81 chr13 42992704 42992977 -58880192 - L2 LINE L2 -5 3267 2976 218 295 16 66 chr13 42993033 42993088 -58880081 + MIR SINE MIR 20 76 -186 1964 125 33 7 chr13 42993088 42993392 -58879777 - AluSx SINE Alu 0 312 1 218 295 16 66 chr13 42993392 42993458 -58879711 + MIR SINE MIR 76 135 -127 1484 213 57 42 chr13 42993718 42994173 -58878996 + MLT1C LTR MaLR 6 467 0 1453 232 47 17 chr13 42994227 42994778 -58878391 + MLT2F LTR ERVL 1 609 -54 271 222 120 60 chr13 42996294 42996411 -58876758 + MIR SINE MIR 68 191 -71 222 286 104 0 chr13 42996847 42996924 -58876245 + L3b LINE CR1 1407 1491 -92 1104 304 179 24 chr13 42998143 42998854 -58874315 - L3 LINE CR1 -7 1570 750 202 195 24 0 chr13 42998857 42998898 -58874271 - L3b LINE CR1 -15 1568 1527 1927 166 0 3 chr13 42999075 42999377 -58873792 + AluJb SINE Alu 1 301 -11 250 290 100 10 chr13 42999613 42999713 -58873456 + MIR SINE MIR 44 152 -56 2146 152 0 0 chr13 42999792 43000094 -58873075 + AluSx SINE Alu 1 302 -10 465 241 128 8 chr13 43000413 43000546 -58872623 - MIR3 SINE MIR -19 189 41 555 173 0 0 chr13 43001304 43001407 -58871762 - MER5A DNA MER1_type -83 106 4 205 330 123 66 chr13 43003380 43003698 -58869471 + L2 LINE L2 2572 2907 -407 2141 113 7 3 chr13 43005189 43005489 -58867680 - AluY SINE Alu -10 301 1 211 388 58 0 chr13 43005521 43005642 -58867527 - L2 LINE L2 -6 3266 3139 1619 140 25 146 chr13 43006061 43006505 -58866664 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 43007975 43007997 -58865172 + AT_rich Low_complexity Low_complexity 1 22 0 1124 193 65 88 chr13 43008017 43008416 -58864753 + MLT1B LTR MaLR 1 390 0 371 266 170 26 chr13 43008503 43008732 -58864437 + L2 LINE L2 3052 3313 0 209 290 210 32 chr13 43009535 43009659 -58863510 + MIR SINE MIR 73 218 -44 243 0 0 0 chr13 43010798 43010825 -58862344 + (T)n Simple_repeat Simple_repeat 1 27 0 331 235 32 26 chr13 43012092 43012403 -58860766 + (TG)n Simple_repeat Simple_repeat 1 313 0 627 216 58 22 chr13 43012708 43012847 -58860322 + MIR SINE MIR 13 156 -106 6301 103 63 59 chr13 43012849 43014690 -58858479 - pTR5 LTR ERV1 0 2438 741 213 65 0 0 chr13 43016171 43016202 -58856967 + (T)n Simple_repeat Simple_repeat 1 31 0 198 304 67 44 chr13 43017635 43017770 -58855399 + L2 LINE L2 2722 2859 -455 1840 238 36 70 chr13 43017986 43018604 -58854565 + MLT1E2 LTR MaLR 24 620 -6 500 259 107 36 chr13 43018634 43018858 -58854311 + MIR SINE MIR 8 247 -15 1167 130 5 0 chr13 43019031 43019231 -58853938 + L1PB1 LINE L1 1 201 -6662 11895 191 42 23 chr13 43019231 43023767 -58849402 + L1PB1 LINE L1 635 5085 -1782 2366 104 0 0 chr13 43023767 43024076 -58849093 + AluY SINE Alu 1 309 -2 11895 191 42 23 chr13 43024076 43025124 -58848045 + L1PB1 LINE L1 5085 6475 -392 2101 126 3 0 chr13 43025124 43025417 -58847752 + AluSx SINE Alu 1 294 -18 11895 191 42 23 chr13 43025417 43025535 -58847634 + L1PB1 LINE L1 6475 6589 -278 5708 148 5 11 chr13 43025539 43027139 -58846030 - L1PB1 LINE L1 -1 6150 4556 1934 102 21 3 chr13 43027139 43027423 -58845746 + L1PB1 LINE L1 6574 6862 -5 2456 90 0 3 chr13 43027910 43028222 -58844947 - AluY SINE Alu 0 311 1 327 331 8 8 chr13 43028403 43028527 -58844642 + MIR3 SINE MIR 75 198 -10 715 279 39 14 chr13 43029809 43030092 -58843077 + L1MEc LINE L1 10 299 -6097 321 169 11 0 chr13 43030103 43030192 -58842977 + MER96B DNA MER1_type? 85 174 -243 1280 263 25 21 chr13 43030261 43030744 -58842425 - L1M4 LINE L1 -985 5161 4677 615 111 0 10 chr13 43030756 43030855 -58842314 - Charlie3 DNA MER1_type 0 2712 2615 364 350 41 12 chr13 43031418 43031758 -58841411 - L1MEc LINE L1 -5990 406 57 1027 207 68 44 chr13 43031770 43032108 -58841061 - HsTC2 DNA Tc2 -109 1789 1268 594 217 22 7 chr13 43032115 43032253 -58840916 - HsTC2 DNA Tc2 -1758 140 1 216 250 18 0 chr13 43032566 43032622 -58840547 - MIR SINE MIR -2 260 204 1865 198 6 8 chr13 43032996 43033355 -58839814 + MLT1A1 LTR MaLR 1 358 -7 2468 78 3 10 chr13 43033500 43033809 -58839360 + AluSp SINE Alu 1 307 -6 335 146 0 18 chr13 43033918 43033973 -58839196 + Tigger2 DNA MER2_type 1 54 -2664 2268 126 61 7 chr13 43033977 43034389 -58838780 + Tigger2 DNA MER2_type 2285 2718 0 1915 134 50 20 chr13 43034422 43034779 -58838390 + THE1C LTR MaLR 8 375 0 325 409 0 0 chr13 43034836 43034963 -58838206 - MIR SINE MIR -108 154 28 377 276 69 55 chr13 43034978 43035123 -58838046 + MIR3 SINE MIR 62 208 0 821 177 0 0 chr13 43035338 43035468 -58837701 - FLAM_A SINE Alu -3 130 1 207 0 0 0 chr13 43035494 43035517 -58837652 + (T)n Simple_repeat Simple_repeat 1 23 0 591 176 8 15 chr13 43036088 43036219 -58836950 - MSTD LTR MaLR -266 130 1 1301 81 0 16 chr13 43036998 43037183 -58835986 - L1PA8 LINE L1 0 6172 5991 186 43 0 0 chr13 43037204 43037227 -58835942 + (A)n Simple_repeat Simple_repeat 1 23 0 1754 186 7 7 chr13 43039442 43039748 -58833421 + AluJo SINE Alu 1 306 -6 1327 226 117 32 chr13 43041234 43041677 -58831492 - MLT1D LTR MaLR 0 505 25 342 321 149 20 chr13 43043005 43043307 -58829862 + L2 LINE L2 2504 2844 -470 313 261 7 7 chr13 43044675 43044813 -58828356 + CT-rich Low_complexity Low_complexity 2 139 0 313 333 93 54 chr13 43045458 43045812 -58827357 - L2 LINE L2 -522 2792 2425 2346 101 7 0 chr13 43046371 43046677 -58826492 - AluSp SINE Alu -5 308 1 322 329 70 6 chr13 43047146 43047304 -58825865 + MIR3 SINE MIR 41 208 0 1861 130 0 4 chr13 43047361 43047623 -58825546 - AluSx SINE Alu -45 267 7 1348 192 124 112 chr13 43047914 43048715 -58824454 + LTR1B LTR ERV1 13 822 -4 2633 55 0 3 chr13 43052145 43052456 -58820713 - AluY SINE Alu -1 310 1 562 125 0 0 chr13 43052565 43052661 -58820508 + MER53 DNA DNA 94 189 0 583 299 45 45 chr13 43053189 43053410 -58819759 + L2 LINE L2 2 222 -3092 3501 276 101 87 chr13 43053437 43054590 -58818579 + L2 LINE L2 780 1916 -1397 2269 91 47 0 chr13 43054590 43054887 -58818282 - AluSx SINE Alu -1 311 1 3501 276 101 87 chr13 43054887 43056234 -58816935 + L2 LINE L2 1916 3313 0 219 190 138 0 chr13 43057353 43057411 -58815758 - L3b LINE CR1 -196 1387 1322 847 171 5 57 chr13 43058764 43058823 -58814346 + MER96B DNA MER1_type? 35 96 -321 1957 119 0 52 chr13 43058823 43059133 -58814036 - AluSg SINE Alu -16 294 1 847 171 5 57 chr13 43059133 43059284 -58813885 + MER96B DNA MER1_type? 96 234 -183 212 0 36 0 chr13 43059412 43059440 -58813729 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr13 43059651 43059681 -58813488 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr13 43060039 43060059 -58813110 + (T)n Simple_repeat Simple_repeat 1 20 0 816 229 93 95 chr13 43060406 43060881 -58812288 - MLT1J LTR MaLR -34 477 4 435 52 0 0 chr13 43061371 43061429 -58811740 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 203 182 23 0 chr13 43063902 43063946 -58809223 + (CA)n Simple_repeat Simple_repeat 2 46 0 1962 157 3 3 chr13 43065288 43065640 -58807529 + L1MA4A LINE L1 5832 6182 -121 21 0 0 0 chr13 43066009 43066030 -58807139 + AT_rich Low_complexity Low_complexity 1 21 0 2499 40 20 16 chr13 43066068 43066371 -58806798 + AluY SINE Alu 1 304 -7 389 150 50 30 chr13 43066557 43066657 -58806512 - L1MA4A LINE L1 -5 6298 6197 590 295 29 9 chr13 43067289 43067499 -58805670 - L2 LINE L2 -256 3057 2844 325 170 160 0 chr13 43067500 43067600 -58805569 + HAL1b LINE L1 770 885 -463 293 205 0 26 chr13 43067814 43067892 -58805277 + CT-rich Low_complexity Low_complexity 4 79 0 1609 136 92 28 chr13 43068842 43069159 -58804010 + MER1B DNA MER1_type 1 337 0 291 182 13 91 chr13 43069171 43069248 -58803921 + MLT1I LTR MaLR 68 138 -271 301 322 52 35 chr13 43069748 43069863 -58803306 - L2 LINE L2 -17 3255 3139 281 308 62 52 chr13 43070199 43070488 -58802681 - L2 LINE L2 -666 2648 2357 395 266 140 21 chr13 43070779 43070922 -58802247 + MIR SINE MIR 82 241 -21 211 377 55 7 chr13 43071171 43071317 -58801852 - MIR SINE MIR -57 205 53 181 309 0 36 chr13 43071567 43071622 -58801547 - MIR3 SINE MIR -48 160 108 1048 277 160 34 chr13 43071812 43072718 -58800451 + L2 LINE L2 2302 3313 0 25 0 0 0 chr13 43072779 43072804 -58800365 + AT_rich Low_complexity Low_complexity 1 25 0 2175 119 6 8 chr13 43074024 43074384 -58798785 - MER6 DNA MER2_type 0 865 507 907 230 44 54 chr13 43074392 43074709 -58798460 + MER69 DNA AcHobo 48 361 -865 898 238 27 9 chr13 43074923 43075146 -58798023 + LTR16B LTR ERVL 238 464 0 473 212 29 59 chr13 43075574 43075718 -58797451 + MER69 DNA AcHobo 2045 2185 -341 1540 194 26 59 chr13 43075718 43075883 -58797286 + MLT1A2 LTR MaLR 1 170 -204 2220 118 3 0 chr13 43075883 43076179 -58796990 + AluSx SINE Alu 3 299 -13 1540 194 26 59 chr13 43076179 43076400 -58796769 + MLT1A2 LTR MaLR 170 374 0 473 212 29 59 chr13 43076400 43076425 -58796744 + MER69 DNA AcHobo 2185 2209 -317 636 186 50 111 chr13 43076446 43076645 -58796524 + MER20 DNA MER1_type 28 214 -5 359 214 237 23 chr13 43076659 43076921 -58796248 + MER69 DNA AcHobo 2202 2519 -7 214 353 136 15 chr13 43077245 43077517 -58795652 + L2 LINE L2 2457 2761 -553 385 301 0 8 chr13 43077687 43077820 -58795349 + MER94 DNA DNA 1 132 -2 366 358 55 79 chr13 43078159 43078413 -58794756 + L2 LINE L2 3025 3272 0 308 287 11 23 chr13 43078610 43078697 -58794472 - MIR3 SINE MIR -10 198 113 1046 301 70 0 chr13 43078836 43079208 -58793961 - LTR16A LTR ERVL 0 450 53 383 348 93 34 chr13 43079431 43079819 -58793350 - L1 LINE L1 -2162 3984 3574 388 174 22 0 chr13 43080338 43080430 -58792739 + CT-rich Low_complexity Low_complexity 2 95 0 31 92 0 0 chr13 43080665 43080752 -58792417 + AT_rich Low_complexity Low_complexity 1 87 0 1850 164 0 23 chr13 43081542 43081852 -58791317 - AluJb SINE Alu -7 305 3 1367 138 38 8 chr13 43081887 43082126 -58791043 - L1PA16 LINE L1 -9 6157 5912 2702 137 14 12 chr13 43084051 43084481 -58788688 + MSTB1 LTR MaLR 1 431 -1 1165 124 30 5 chr13 43085222 43085423 -58787746 + L1PB2 LINE L1 5944 6149 -2 249 362 0 11 chr13 43085454 43085548 -58787621 + MIR SINE MIR 49 141 -121 205 278 37 0 chr13 43085699 43085753 -58787416 + L2 LINE L2 3258 3313 0 28 86 0 0 chr13 43085863 43085933 -58787236 + AT_rich Low_complexity Low_complexity 1 70 0 1790 155 3 23 chr13 43086444 43086753 -58786416 + AluJb SINE Alu 1 303 -9 396 296 9 0 chr13 43086973 43087088 -58786081 + MER94 DNA DNA 16 131 -3 387 301 60 11 chr13 43087622 43087805 -58785364 + MLT1K LTR MaLR 386 577 -11 408 40 0 0 chr13 43087847 43087897 -58785272 + (TG)n Simple_repeat Simple_repeat 1 50 0 219 36 0 0 chr13 43087896 43087924 -58785245 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2029 109 0 4 chr13 43087925 43088200 -58784969 - AluSc SINE Alu -35 274 1 786 202 44 20 chr13 43088200 43088403 -58784766 + MER21B LTR ERV1 641 848 -15 381 318 60 7 chr13 43088523 43088674 -58784495 - MIR SINE MIR -72 190 32 180 352 39 16 chr13 43089168 43089296 -58783873 - L2 LINE L2 -5 3267 3137 353 256 186 26 chr13 43089596 43089752 -58783417 + MER5A DNA MER1_type 9 189 0 386 117 17 0 chr13 43089917 43089977 -58783192 + U7 snRNA snRNA 1 61 -2 189 178 0 0 chr13 43090910 43090955 -58782214 + (TG)n Simple_repeat Simple_repeat 2 46 0 235 323 134 55 chr13 43091575 43091792 -58781377 - L2 LINE L2 -2 3270 3037 1071 231 49 0 chr13 43092131 43092356 -58780813 + MIR SINE MIR 23 258 -4 2604 109 12 27 chr13 43092530 43092934 -58780235 + MLT2A1 LTR ERVL 3 400 -44 877 176 1 6 chr13 43093232 43094038 -58779131 - BSR/Beta Satellite Satellite 0 802 1 * 1317 122 0 4 chr13 43094033 43094262 -58778907 + LSAU Satellite Satellite 1 228 -270 2512 81 7 0 chr13 43094608 43094916 -58778253 + AluSg SINE Alu 1 310 0 365 55 0 36 chr13 43095004 43095059 -58778110 - HAL1 LINE L1 -10 2497 2445 229 167 0 67 chr13 43095078 43095138 -58778031 - L1PA16 LINE L1 -23 6143 6088 * 3386 224 108 11 chr13 43095132 43096188 -58776981 + L1PB1 LINE L1 6 1163 -5700 10006 197 58 14 chr13 43096212 43099676 -58773493 + L1PB1 LINE L1 1339 5183 -1684 333 0 0 0 chr13 43099676 43099713 -58773456 + (CA)n Simple_repeat Simple_repeat 2 38 0 10006 197 58 14 chr13 43099713 43101476 -58771693 + L1PB1 LINE L1 5183 6867 0 4755 131 11 5 chr13 43101504 43102296 -58770873 - L1PA16 LINE L1 -55 6111 5315 575 264 98 39 chr13 43102311 43102594 -58770575 - HAL1 LINE L1 -111 2396 2074 2438 64 0 16 chr13 43102594 43102908 -58770261 - AluY SINE Alu -2 309 1 575 264 98 39 chr13 43102908 43103083 -58770086 - HAL1 LINE L1 -433 2074 1911 12628 190 49 81 chr13 43103114 43103361 -58769808 - L1MA6 LINE L1 -2 7319 7066 2193 139 0 0 chr13 43103361 43103670 -58769499 + AluSx SINE Alu 1 309 -3 12628 190 49 81 chr13 43103670 43105027 -58768142 - L1MA6 LINE L1 -255 7066 5667 1903 113 0 4 chr13 43105027 43105275 -58767894 + AluSx SINE Alu 61 307 -5 12628 190 49 81 chr13 43105275 43107604 -58765565 - L1MA6 LINE L1 -1654 5667 3264 1942 180 0 0 chr13 43107604 43107904 -58765265 - AluJb SINE Alu -12 300 1 12628 190 49 81 chr13 43107904 43109192 -58763977 - L1MA6 LINE L1 -4057 3264 1936 2372 90 3 3 chr13 43109192 43109502 -58763667 + AluY SINE Alu 1 310 -1 12628 190 49 81 chr13 43109502 43111811 -58761358 - L1MA6 LINE L1 -5385 1936 4 2303 88 0 0 chr13 43111961 43112257 -58760912 - AluY SINE Alu -15 296 1 436 284 196 0 chr13 43112326 43112576 -58760593 - HAL1 LINE L1 -736 1771 1473 901 219 10 5 chr13 43112582 43112774 -58760395 + MER58A DNA MER1_type 1 193 -31 253 224 219 45 chr13 43112829 43113030 -58760139 - HAL1 LINE L1 -1044 1463 1228 1087 261 96 30 chr13 43113184 43113717 -58759452 - HAL1 LINE L1 -1478 1029 462 240 224 40 13 chr13 43114267 43114343 -58758826 - HAL1 LINE L1 -2131 376 299 444 230 146 38 chr13 43114348 43114561 -58758608 - HAL1 LINE L1 -2251 256 21 429 311 186 29 chr13 43114608 43114952 -58758217 + L2 LINE L2 2811 3208 -105 217 186 23 0 chr13 43115229 43115272 -58757897 + T-rich Low_complexity Low_complexity 3 46 0 547 130 9 9 chr13 43115272 43115387 -58757782 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 26 30 0 0 chr13 43115851 43115884 -58757285 + AT_rich Low_complexity Low_complexity 1 33 0 255 266 190 0 chr13 43116130 43116209 -58756960 + MIR3 SINE MIR 105 198 -10 193 208 42 21 chr13 43117072 43117120 -58756049 + L2 LINE L2 3216 3264 -8 1912 155 39 3 chr13 43117422 43117757 -58755412 + MER7A DNA MER2_type 2 346 0 543 244 128 6 chr13 43118219 43118399 -58754770 + MIR SINE MIR 49 250 -12 9516 158 45 11 chr13 43119771 43122300 -58750869 + L1M1 LINE L1 11 2681 -4884 2486 86 0 0 chr13 43122300 43122603 -58750566 + AluSc SINE Alu 1 303 -6 9516 158 45 11 chr13 43122603 43122621 -58750548 + L1M1 LINE L1 2681 2697 -4868 2337 115 20 20 chr13 43122621 43123011 -58750158 + L1MA2 LINE L1 5915 6304 0 207 356 22 0 chr13 43123337 43123427 -58749742 - MIR SINE MIR -111 151 60 1647 174 53 3 chr13 43123584 43123866 -58749303 + AluSx SINE Alu 4 299 -13 193 215 13 13 chr13 43124732 43124811 -58748358 + GA-rich Low_complexity Low_complexity 5 83 0 449 262 6 92 chr13 43127453 43127617 -58745552 - MER5B DNA MER1_type 0 178 29 238 315 72 18 chr13 43127743 43127854 -58745315 - L2 LINE L2 0 3313 3197 1511 167 117 0 chr13 43127997 43128261 -58744908 - AluJb SINE Alu -17 295 1 265 280 75 19 chr13 43128305 43128412 -58744757 + MLT1H LTR MaLR 50 162 -387 245 201 42 146 chr13 43128585 43128729 -58744440 + MLT1H LTR MaLR 421 549 0 294 313 24 0 chr13 43128780 43128863 -58744306 + L2 LINE L2 3184 3268 -4 187 433 37 15 chr13 43128829 43128963 -58744206 - L2 LINE L2 -50 3222 3086 * 335 224 119 45 chr13 43129841 43129975 -58743194 - HAL1 LINE L1 -2363 144 1 419 300 34 9 chr13 43129982 43130215 -58742954 + L1ME4a LINE L1 5710 5948 -173 192 422 0 0 chr13 43131278 43131368 -58741801 - L2 LINE L2 -397 2916 2827 336 295 85 39 chr13 43131803 43131932 -58741237 + L2 LINE L2 3134 3268 -4 1590 251 36 9 chr13 43131932 43132399 -58740770 + L1MC4 LINE L1 6830 7309 -733 634 242 107 46 chr13 43132489 43132816 -58740353 + L1MC4 LINE L1 7692 8038 -4 2310 100 3 0 chr13 43133080 43133381 -58739788 + AluSc SINE Alu 1 302 -7 1998 129 5 58 chr13 43133472 43133651 -58739518 + MER46B DNA MER2_type 2 189 -2542 914 128 0 0 chr13 43133651 43133784 -58739385 + FLAM_C SINE Alu 1 133 0 1998 129 5 58 chr13 43133784 43133795 -58739374 + MER46B DNA MER2_type 189 199 -2532 2302 100 0 29 chr13 43133795 43134105 -58739064 + AluSg SINE Alu 2 302 -8 1998 129 5 58 chr13 43134105 43134293 -58738876 + MER46B DNA MER2_type 199 236 0 234 0 0 0 chr13 43135420 43135446 -58737723 + (A)n Simple_repeat Simple_repeat 1 26 0 526 155 6 138 chr13 43135824 43135998 -58737171 - MLT2C2 LTR ERVL 0 397 247 5336 154 27 12 chr13 43136021 43137196 -58735973 - L1MA8 LINE L1 -1 6290 5098 1396 162 4 15 chr13 43137196 43137462 -58735707 - MLT2C2 LTR ERVL -201 263 1 301 284 71 10 chr13 43137537 43137704 -58735465 - L1ME LINE L1 -397 5765 5575 1989 113 6 35 chr13 43137704 43138015 -58735154 + AluSx SINE Alu 1 302 -10 301 284 71 10 chr13 43138015 43138042 -58735127 - L1ME LINE L1 -587 5575 5551 448 283 87 70 chr13 43138260 43138490 -58734679 - L2 LINE L2 0 3272 3039 1241 193 65 38 chr13 43138679 43139042 -58734127 + MLT2B1 LTR ERVL 4 374 -40 363 60 0 0 chr13 43139042 43139092 -58734077 + (TG)n Simple_repeat Simple_repeat 2 51 0 1241 193 65 38 chr13 43139092 43139135 -58734034 + MLT2B1 LTR ERVL 374 414 0 712 251 116 20 chr13 43140381 43140503 -58732666 + HAL1 LINE L1 769 878 -1629 186 43 0 0 chr13 43140503 43140526 -58732643 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 712 251 116 20 chr13 43140526 43140757 -58732412 + HAL1 LINE L1 878 1156 -1351 328 226 98 45 chr13 43140908 43141041 -58732128 + HAL1 LINE L1 1667 1806 -701 544 240 140 69 chr13 43141103 43141582 -58731587 + HAL1 LINE L1 1995 2507 0 366 237 0 10 chr13 43141591 43141688 -58731481 - L1ME LINE L1 -425 5696 5601 7252 44 1 9 chr13 43141813 43142774 -58730395 + L1PA6 LINE L1 5201 6154 0 23 68 0 0 chr13 43142875 43142919 -58730250 + AT_rich Low_complexity Low_complexity 1 44 0 4958 131 53 2 chr13 43142977 43143785 -58729384 - HUERS-P3b LTR ERV1 -331 7087 6239 180 0 0 0 chr13 43143787 43143807 -58729362 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1440 218 77 10 chr13 43143858 43144248 -58728921 - LTR52 LTR ERVL -3 418 3 180 97 0 0 chr13 43145310 43145341 -58727828 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 1785 60 4 0 chr13 43145341 43145576 -58727593 - LTR17 LTR ERV1 -455 325 90 377 289 132 19 chr13 43147636 43147795 -58725374 + MIR3 SINE MIR 30 206 -2 2283 87 3 0 chr13 43148827 43149113 -58724056 - AluSc SINE Alu -22 287 1 1410 137 9 5 chr13 43149247 43149459 -58723710 - AluJo SINE Alu -99 213 1 915 179 6 28 chr13 43149986 43150178 -58722991 - MER20 DNA MER1_type -32 187 4 206 319 33 22 chr13 43150282 43150373 -58722796 - MIR SINE MIR -50 212 121 244 296 173 0 chr13 43150527 43150608 -58722561 - MIR3 SINE MIR -21 187 93 1992 180 18 55 chr13 43150633 43151121 -58722048 - MER31A LTR ERV1 -9 476 7 489 34 0 0 chr13 43151227 43151286 -58721883 + (TATG)n Simple_repeat Simple_repeat 4 62 0 2375 109 22 27 chr13 43151707 43152073 -58721096 - THE1B LTR MaLR 0 364 1 225 275 58 0 chr13 43152103 43152172 -58720997 + L2 LINE L2 3176 3248 -65 1033 184 42 17 chr13 43152422 43152661 -58720508 + LTR38 LTR ERV1 152 396 -160 303 253 0 22 chr13 43152676 43152767 -58720402 + MER87 LTR ERV1 395 483 -58 2327 84 0 44 chr13 43153034 43153354 -58719815 - AluY SINE Alu -5 306 1 236 246 35 0 chr13 43154450 43154507 -58718662 + MIR SINE MIR 97 155 -107 684 334 58 15 chr13 43155303 43155713 -58717456 + LTR16A LTR ERVL 16 443 -7 5735 115 26 0 chr13 43155976 43156914 -58716255 + L1PA14 LINE L1 5197 6157 -4 231 36 0 0 chr13 43156957 43156985 -58716184 + (A)n Simple_repeat Simple_repeat 1 28 0 1194 183 204 52 chr13 43157057 43157352 -58715817 - MSTD LTR MaLR 0 396 40 3333 118 4 24 chr13 43157352 43157859 -58715310 + LOR1a LTR ERV1 1 497 0 1194 183 204 52 chr13 43157859 43157907 -58715262 - MSTD LTR MaLR -356 40 1 185 205 26 0 chr13 43158958 43158997 -58714172 - L2 LINE L2 -2 3311 3272 1400 231 54 8 chr13 43159467 43159840 -58713329 - MLT1B LTR MaLR 0 390 1 5192 88 34 3 chr13 43159870 43160640 -58712529 - L1MA2 LINE L1 0 6304 5511 359 381 40 0 chr13 43160755 43160881 -58712288 + L2 LINE L2 3137 3267 -5 197 333 29 0 chr13 43161226 43161295 -58711874 - MIR SINE MIR -90 118 48 723 174 0 0 chr13 43161947 43162062 -58711107 + AluJb SINE Alu 1 115 -197 1150 155 16 36 chr13 43162077 43162270 -58710899 + AluJb SINE Alu 91 279 -33 210 294 0 0 chr13 43162270 43162321 -58710848 + (TA)n Simple_repeat Simple_repeat 2 52 0 342 0 0 0 chr13 43162322 43162360 -58710809 + (TG)n Simple_repeat Simple_repeat 2 39 0 200 59 29 0 chr13 43162362 43162396 -58710773 + (GA)n Simple_repeat Simple_repeat 2 36 0 908 171 41 5 chr13 43162675 43162991 -58710178 - MLT1B LTR MaLR -2 388 3 1536 166 3 59 chr13 43163270 43163559 -58709610 - AluJb SINE Alu 0 312 40 362 356 53 0 chr13 43163739 43163871 -58709298 + MER91C DNA MER1_type 2 140 0 639 223 23 0 chr13 43164086 43164216 -58708953 - MIR SINE MIR -68 194 62 22 35 0 0 chr13 43165074 43165103 -58708066 + AT_rich Low_complexity Low_complexity 1 29 0 725 256 81 51 chr13 43165841 43166271 -58706898 - L1MC4 LINE L1 -95 7947 7505 539 241 138 31 chr13 43166288 43166608 -58706561 - L1MC4a LINE L1 -1496 6312 5959 346 250 29 39 chr13 43166625 43166729 -58706440 + L1MC4 LINE L1 6614 6716 -1326 584 233 102 5 chr13 43166766 43166981 -58706188 - L1MC4a LINE L1 -2048 5760 5525 516 300 30 39 chr13 43166981 43167211 -58705958 - MIR SINE MIR -31 231 4 2424 82 3 0 chr13 43167499 43167804 -58705365 + AluY SINE Alu 1 306 -5 409 299 137 64 chr13 43168096 43168354 -58704815 - L2 LINE L2 -248 3065 2781 2155 96 10 3 chr13 43168354 43168647 -58704522 + AluSq SINE Alu 1 295 -18 409 299 137 64 chr13 43168647 43168670 -58704499 - L2 LINE L2 -532 2781 2761 1489 180 49 55 chr13 43168840 43169207 -58703962 + MLT1A1 LTR MaLR 1 365 0 212 188 75 0 chr13 43170095 43170175 -58702994 + (CATAT)n Simple_repeat Simple_repeat 4 89 0 276 77 0 0 chr13 43170825 43170864 -58702305 + (CA)n Simple_repeat Simple_repeat 2 40 0 548 187 313 5 chr13 43171537 43171751 -58701418 - LTR50 LTR ERVL 0 795 516 593 262 149 23 chr13 43171774 43172076 -58701093 - LTR50 LTR ERVL -451 344 5 355 225 108 17 chr13 43172273 43172393 -58700776 - MIR SINE MIR -9 253 123 1090 155 5 0 chr13 43172739 43172932 -58700237 + L1PBa LINE L1 7 200 -6663 9006 114 121 7 chr13 43172932 43174506 -58698663 + L1PBa LINE L1 634 2386 -4477 2808 212 36 3 chr13 43174508 43175238 -58697931 + L1 LINE L1 3231 3984 -2878 * 4695 190 4 1 chr13 43175233 43176771 -58696398 + L1P5 LINE L1 4243 5784 -367 775 97 0 0 chr13 43176771 43176885 -58696284 + L1PB1 LINE L1 6038 6151 0 297 257 127 55 chr13 43176916 43177128 -58696041 - HAL1 LINE L1 -1553 954 720 2318 120 0 3 chr13 43177128 43177437 -58695732 - AluSx SINE Alu -4 308 1 297 257 127 55 chr13 43177437 43177477 -58695692 - HAL1 LINE L1 -1787 720 684 1118 252 175 27 chr13 43177556 43178140 -58695029 - L1MC4 LINE L1 -131 7911 7242 786 260 105 12 chr13 43178121 43178446 -58694723 - L1MC4 LINE L1 -929 7066 6723 * 49 43 0 0 chr13 43178597 43178667 -58694502 + AT_rich Low_complexity Low_complexity 1 70 0 562 251 145 18 chr13 43178729 43178956 -58694213 + L1MC4 LINE L1 7167 7502 -386 1009 264 60 35 chr13 43179231 43179628 -58693541 - LTR16C LTR ERVL 0 491 85 638 162 15 157 chr13 43179800 43179997 -58693172 + FAM SINE Alu 1 169 -6 228 254 118 18 chr13 43180015 43180125 -58693044 - L1MC4 LINE L1 -1329 6713 6593 537 330 80 0 chr13 43180127 43180351 -58692818 - MIR SINE MIR -8 254 13 21 0 0 0 chr13 43181117 43181138 -58692031 + AT_rich Low_complexity Low_complexity 1 21 0 586 235 8 22 chr13 43181354 43181587 -58691582 + MER87 LTR ERV1 1 274 -267 7050 47 1 12 chr13 43181598 43182395 -58690774 - L1PA7 LINE L1 0 6154 5350 2211 114 7 0 chr13 43182395 43182694 -58690475 - AluY SINE Alu -10 301 1 7050 47 1 12 chr13 43182694 43183630 -58689539 - L1PA7 LINE L1 -804 5350 4429 13098 124 15 28 chr13 43183630 43186926 -58686243 - L1P3 LINE L1 -3124 3337 8 1046 244 4 8 chr13 43186948 43187198 -58685971 + MER87 LTR ERV1 293 541 0 1614 179 25 47 chr13 43187240 43187369 -58685800 + AluJb SINE Alu 1 131 -181 2069 120 3 43 chr13 43187369 43187693 -58685476 + AluSq SINE Alu 1 311 -2 1614 179 25 47 chr13 43187693 43187882 -58685287 + AluJb SINE Alu 131 312 0 220 323 0 0 chr13 43189304 43189366 -58683803 + (TG)n Simple_repeat Simple_repeat 1 62 0 297 296 92 0 chr13 43189596 43189694 -58683475 + L2 LINE L2 3156 3262 -10 521 316 9 33 chr13 43190079 43190291 -58682878 + MIR SINE MIR 48 254 -8 1571 238 52 33 chr13 43191271 43191311 -58681858 - MER77 LTR ERV1 -51 554 516 1882 135 48 58 chr13 43191311 43191513 -58681656 - THE1C LTR MaLR 0 375 177 2189 135 0 0 chr13 43191513 43191817 -58681352 - AluSq SINE Alu -8 305 2 1882 135 48 58 chr13 43191817 43191993 -58681176 - THE1C LTR MaLR -198 177 1 1571 238 52 33 chr13 43191993 43192436 -58680733 - MER77 LTR ERV1 -89 516 62 2437 72 0 13 chr13 43193263 43193569 -58679600 - AluY SINE Alu -9 302 1 858 219 0 22 chr13 43193609 43193787 -58679382 + FAM SINE Alu 1 174 -1 218 178 22 0 chr13 43194427 43194472 -58678697 + L2 LINE L2 3268 3313 0 247 246 18 0 chr13 43195227 43195284 -58677885 + CT-rich Low_complexity Low_complexity 3 60 0 22 35 0 0 chr13 43195508 43195537 -58677632 + AT_rich Low_complexity Low_complexity 1 29 0 302 293 20 20 chr13 43195728 43195827 -58677342 - MIR3 SINE MIR -46 162 64 21 71 0 0 chr13 43196699 43196741 -58676428 + AT_rich Low_complexity Low_complexity 1 42 0 2289 112 0 0 chr13 43196925 43197229 -58675940 - AluSg SINE Alu -6 304 1 530 266 100 48 chr13 43197965 43198194 -58674975 + MIR SINE MIR 22 262 0 1588 115 45 0 chr13 43198231 43198500 -58674669 + L1MA5A LINE L1 6014 6294 -3 209 310 56 0 chr13 43198704 43198775 -58674394 + MIR SINE MIR 13 87 -175 222 362 69 0 chr13 43200808 43200924 -58672245 + MIR SINE MIR 94 217 -45 382 295 9 0 chr13 43201034 43201146 -58672023 + MLT1L LTR MaLR 134 246 -369 2039 146 10 0 chr13 43201421 43201729 -58671440 + AluSx SINE Alu 1 311 -1 1723 50 129 0 chr13 43201998 43202238 -58670931 + AluY SINE Alu 3 273 -38 346 345 81 0 chr13 43202938 43203086 -58670083 - MIR SINE MIR -56 206 47 1550 204 112 22 chr13 43203214 43203616 -58669553 + MER74C LTR ERVL 16 453 -7 220 370 87 16 chr13 43203645 43203772 -58669397 + MIR3 SINE MIR 9 144 -64 2283 101 3 3 chr13 43203980 43204277 -58668892 + AluSp SINE Alu 1 297 -16 233 281 0 0 chr13 43204479 43204536 -58668633 + CT-rich Low_complexity Low_complexity 4 60 0 462 294 99 38 chr13 43205562 43205855 -58667314 + LTR16A1 LTR ERVL 147 457 0 2387 88 3 0 chr13 43206057 43206353 -58666816 + AluSp SINE Alu 1 297 -16 1968 198 28 24 chr13 43206591 43207145 -58666024 - MLT1F1 LTR MaLR 0 567 1 222 260 0 0 chr13 43208009 43208059 -58665110 + L2 LINE L2 3222 3271 -1 564 299 96 52 chr13 43208250 43208415 -58664754 - L2 LINE L2 0 3313 3157 1813 121 80 52 chr13 43208415 43208779 -58664390 - THE1C LTR MaLR 0 375 2 564 299 96 52 chr13 43208779 43208977 -58664192 - L2 LINE L2 -156 3157 2934 699 233 52 9 chr13 43209053 43209285 -58663884 + L1MD3 LINE L1 7754 7995 0 341 296 98 61 chr13 43209319 43209596 -58663573 - L2 LINE L2 -459 2855 2569 2194 130 0 0 chr13 43209638 43209946 -58663223 - AluSx SINE Alu 0 312 5 480 284 134 40 chr13 43212172 43212648 -58660521 - LTR33 LTR ERVL 0 521 1 414 269 61 66 chr13 43212879 43213091 -58660078 - MIR SINE MIR -50 212 2 317 349 41 14 chr13 43213523 43213669 -58659500 + MER5A DNA MER1_type 1 150 -39 204 40 0 0 chr13 43215481 43215506 -58657663 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2091 117 3 0 chr13 43215509 43215792 -58657377 - AluSx SINE Alu -27 285 2 22 35 0 0 chr13 43216038 43216067 -58657102 + AT_rich Low_complexity Low_complexity 1 29 0 2610 161 4 25 chr13 43216456 43216946 -58656223 + MER66B LTR ERV1 6 485 -1 917 158 31 72 chr13 43217229 43217451 -58655718 + MER20 DNA MER1_type 3 215 -4 1427 190 13 40 chr13 43217759 43218059 -58655110 - AluJo SINE Alu -9 303 12 215 314 109 39 chr13 43218370 43218526 -58654643 - MIR SINE MIR -76 186 20 2211 101 6 25 chr13 43222235 43222553 -58650616 - AluSp SINE Alu -1 312 1 441 0 0 0 chr13 43222553 43222602 -58650567 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1969 133 4 4 chr13 43222602 43222881 -58650288 - AluSg SINE Alu -31 279 1 259 223 256 41 chr13 43223071 43223192 -58649977 - MIR SINE MIR -101 161 15 429 318 70 45 chr13 43223542 43223743 -58649426 - MIR SINE MIR -46 216 11 366 243 243 21 chr13 43224120 43224264 -58648905 - MER5A DNA MER1_type -1 188 13 295 188 0 0 chr13 43224358 43224406 -58648763 - L2 LINE L2 -2 3270 3223 263 314 0 0 chr13 43224638 43224708 -58648461 - L2 LINE L2 -6 3266 3197 295 326 183 11 chr13 43224909 43225084 -58648085 + MIR SINE MIR 26 230 -32 1157 126 51 0 chr13 43225235 43225410 -58647759 - AluSq SINE Alu -11 302 119 209 139 23 0 chr13 43226281 43226324 -58646845 + (TG)n Simple_repeat Simple_repeat 2 45 0 189 0 0 0 chr13 43227411 43227432 -58645737 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 183 42 0 0 chr13 43227484 43227508 -58645661 + (TG)n Simple_repeat Simple_repeat 2 25 0 2491 152 50 76 chr13 43228642 43228779 -58644390 - L1MA7 LINE L1 0 6291 6152 257 30 0 0 chr13 43228779 43228812 -58644357 - U2 snRNA snRNA -155 33 1 2491 152 50 76 chr13 43228812 43229262 -58643907 - L1MA7 LINE L1 -139 6152 5688 524 276 153 18 chr13 43229503 43229731 -58643438 + MIR SINE MIR 2 260 -2 618 277 40 33 chr13 43229933 43230207 -58642962 + MARNA DNA Mariner 43 318 -268 198 103 0 0 chr13 43230222 43230251 -58642918 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 346 172 280 11 chr13 43230271 43230364 -58642805 - L2 LINE L2 -5 3308 3191 198 103 0 0 chr13 43230370 43230399 -58642770 + (T)n Simple_repeat Simple_repeat 1 29 0 784 290 79 28 chr13 43230844 43231310 -58641859 + Tigger8 DNA MER2_type 159 648 -18 371 282 34 0 chr13 43231316 43231465 -58641704 + L1ME4a LINE L1 5717 5870 -251 1194 129 67 5 chr13 43231497 43231721 -58641448 + L1MB1 LINE L1 5924 6161 -7 801 184 7 0 chr13 43231774 43231910 -58641259 - FRAM SINE Alu -7 169 33 462 101 0 0 chr13 43231936 43232005 -58641164 + (CA)n Simple_repeat Simple_repeat 2 70 0 232 164 182 0 chr13 43232061 43232116 -58641053 + L1ME4a LINE L1 5977 6041 -80 21 0 0 0 chr13 43232747 43232768 -58640401 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 43233574 43233604 -58639565 + AT_rich Low_complexity Low_complexity 1 30 0 1115 268 90 0 chr13 43233892 43233948 -58639221 + L2 LINE L2 2247 2297 -1017 2043 149 49 3 chr13 43233948 43234296 -58638873 + MLT1A1 LTR MaLR 2 365 0 1115 268 90 0 chr13 43234296 43234571 -58638598 + L2 LINE L2 2297 2608 -706 1801 165 93 5 chr13 43234591 43234979 -58638190 - L1MB5 LINE L1 -6 6168 5747 467 234 25 106 chr13 43234991 43235226 -58637943 + MER112 DNA MER1_type 4 219 -41 1764 181 0 7 chr13 43235342 43235634 -58637535 - AluJb SINE Alu -22 290 1 720 275 128 63 chr13 43235722 43236237 -58636932 + L2 LINE L2 2600 3142 -171 2326 88 10 0 chr13 43236237 43236533 -58636636 - AluSg SINE Alu -11 299 1 720 275 128 63 chr13 43236533 43236563 -58636606 + L2 LINE L2 3142 3169 -144 418 272 131 11 chr13 43236576 43236899 -58636270 - LTR16C LTR ERVL -14 477 71 584 239 62 17 chr13 43236938 43237114 -58636055 + L2 LINE L2 3130 3313 0 2127 136 0 3 chr13 43237936 43238246 -58634923 + AluSc SINE Alu 1 309 0 320 243 112 9 chr13 43238344 43238451 -58634718 - MIR SINE MIR -113 149 32 357 43 0 0 chr13 43238602 43238649 -58634520 + (TG)n Simple_repeat Simple_repeat 2 48 0 2687 97 5 20 chr13 43238654 43239057 -58634112 - L1PA12 LINE L1 -15 6153 5757 2008 133 0 0 chr13 43239203 43239526 -58633643 - AluSc SINE Alu 0 323 1 21 36 0 0 chr13 43240339 43240367 -58632802 + AT_rich Low_complexity Low_complexity 1 28 0 356 289 175 36 chr13 43240785 43240979 -58632190 + MIR SINE MIR 26 246 -16 302 317 39 50 chr13 43241631 43241811 -58631358 - L3 LINE CR1 -481 1096 919 200 273 0 36 chr13 43242223 43242278 -58630891 - MIR SINE MIR -6 256 204 22 0 0 0 chr13 43244088 43244110 -58629059 + AT_rich Low_complexity Low_complexity 1 22 0 213 235 0 0 chr13 43244673 43244724 -58628445 + (TA)n Simple_repeat Simple_repeat 1 51 0 353 359 48 55 chr13 43246704 43246906 -58626263 - L2 LINE L2 0 3272 3071 288 0 0 0 chr13 43246906 43246938 -58626231 + (TG)n Simple_repeat Simple_repeat 2 33 0 353 359 48 55 chr13 43246938 43247025 -58626144 - L2 LINE L2 -201 3071 2985 351 266 55 0 chr13 43247244 43247353 -58625816 - L2 LINE L2 0 3313 3199 278 26 26 0 chr13 43247953 43247992 -58625177 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 969 345 141 39 chr13 43247992 43248196 -58624973 - L2 LINE L2 -408 2906 2724 1615 153 0 15 chr13 43248196 43248458 -58624711 + AluSx SINE Alu 1 258 -54 969 345 141 39 chr13 43248458 43249327 -58623842 - L2 LINE L2 -590 2724 1653 2270 67 0 44 chr13 43249327 43249643 -58623526 - AluY SINE Alu -2 309 8 969 345 141 39 chr13 43249643 43249972 -58623197 - L2 LINE L2 -1661 1653 1359 2205 128 3 0 chr13 43250001 43250306 -58622863 - AluSx SINE Alu -6 306 1 200 367 189 19 chr13 43251123 43251320 -58621849 + L2 LINE L2 1704 1866 -1448 181 0 0 65 chr13 43251320 43251351 -58621818 + (TTG)n Simple_repeat Simple_repeat 2 30 0 200 367 189 19 chr13 43251351 43251744 -58621425 + L2 LINE L2 1866 2395 -919 253 258 22 11 chr13 43251799 43251888 -58621281 + MER5B DNA MER1_type 89 178 0 388 294 0 0 chr13 43251981 43252073 -58621096 + MIR SINE MIR 63 154 -108 3568 156 10 3 chr13 43252919 43253520 -58619649 + MER6A DNA MER2_type 1 605 0 2163 128 3 0 chr13 43253560 43253864 -58619305 + AluSx SINE Alu 1 305 -7 257 239 87 43 chr13 43253977 43254115 -58619054 - L1MC/D LINE L1 -1986 5822 5679 2409 118 19 16 chr13 43254435 43254808 -58618361 + THE1C LTR MaLR 2 375 0 9400 113 65 45 chr13 43254810 43256358 -58616811 + THE1C-int LTR MaLR 3 1580 0 2458 99 16 19 chr13 43256358 43256733 -58616436 + THE1C LTR MaLR 1 374 -1 237 333 20 10 chr13 43257125 43257224 -58615945 + MIR SINE MIR 48 147 -115 1763 162 0 29 chr13 43257706 43258020 -58615149 - MER1B DNA MER1_type 0 339 35 259 132 0 0 chr13 43257996 43258034 -58615135 + Charlie3 DNA MER1_type 37 74 -2636 * 317 277 99 75 chr13 43258383 43258596 -58614573 - L1MC/D LINE L1 -2009 5799 5582 275 328 49 16 chr13 43258609 43258731 -58614438 - L2 LINE L2 -478 2836 2711 336 299 43 24 chr13 43258746 43258910 -58614259 - LTR67 LTR ERVL 0 557 391 496 221 39 77 chr13 43259068 43259249 -58613920 - MER5B DNA MER1_type -1 177 4 336 319 232 8 chr13 43259789 43260030 -58613139 - L2 LINE L2 -995 2319 2025 4278 161 51 1 chr13 43260043 43260851 -58612318 + L1MB7 LINE L1 5337 6184 0 401 307 89 61 chr13 43260938 43261264 -58611905 - L2 LINE L2 -1418 1896 1562 23 0 0 0 chr13 43261457 43261480 -58611689 + AT_rich Low_complexity Low_complexity 1 23 0 253 345 79 0 chr13 43261784 43261923 -58611246 - MIR SINE MIR -106 156 7 267 352 41 38 chr13 43261955 43262222 -58610947 - L2 LINE L2 -2411 903 636 1141 272 83 23 chr13 43262530 43262916 -58610253 + L2 LINE L2 2902 3310 -3 4820 139 25 18 chr13 43263176 43263960 -58609209 - MER54B LTR ERVL -1 792 3 701 200 15 0 chr13 43264397 43264526 -58608643 + MER2 DNA MER2_type 1 131 -214 1943 139 69 74 chr13 43264526 43264709 -58608460 + Tigger2a DNA MER2_type 1 183 -2525 691 195 0 8 chr13 43264709 43264832 -58608337 + FLAM_A SINE Alu 1 122 -11 1943 139 69 74 chr13 43264832 43265081 -58608088 + Tigger2a DNA MER2_type 183 431 -3 447 101 38 0 chr13 43265084 43265163 -58608006 + MER2 DNA MER2_type 129 210 -135 357 216 27 0 chr13 43265192 43265266 -58607903 + MER2 DNA MER2_type 270 345 0 213 311 133 44 chr13 43265309 43265534 -58607635 - L2 LINE L2 -612 2702 2458 29297 111 13 59 chr13 43265974 43272422 -58600747 - L1PA7 LINE L1 0 6154 12 1040 179 0 34 chr13 43273373 43273552 -58599617 - FAM SINE Alu -2 173 1 24 0 0 0 chr13 43273599 43273623 -58599546 + AT_rich Low_complexity Low_complexity 1 24 0 190 318 218 9 chr13 43273641 43273751 -58599418 + L2 LINE L2 3137 3269 -3 2847 91 0 0 chr13 43274066 43274441 -58598728 - THE1C LTR MaLR 0 375 1 2531 303 120 17 chr13 43274866 43275817 -58597352 + L2 LINE L2 1808 2940 -373 1665 145 0 0 chr13 43275817 43276059 -58597110 - AluSx SINE Alu -13 299 58 2531 303 120 17 chr13 43276059 43276441 -58596728 + L2 LINE L2 2940 3281 -32 388 341 74 6 chr13 43276460 43276636 -58596533 - MIR SINE MIR -73 189 2 395 260 114 0 chr13 43277405 43277528 -58595641 + MIR SINE MIR 56 192 -70 897 194 104 15 chr13 43277602 43277803 -58595366 - MER20 DNA MER1_type 0 219 1 440 299 29 15 chr13 43277810 43277985 -58595184 - MIR SINE MIR -48 214 39 550 165 0 0 chr13 43278504 43278589 -58594580 + AluJ/FLAM SINE Alu 1 85 -227 421 365 147 16 chr13 43278667 43279218 -58593951 + L2 LINE L2 2006 2628 -686 347 302 26 38 chr13 43279240 43279433 -58593736 + L2 LINE L2 2772 2974 -298 2502 69 0 0 chr13 43280275 43280578 -58592591 - AluY SINE Alu -8 303 1 22 0 0 0 chr13 43281806 43281828 -58591341 + AT_rich Low_complexity Low_complexity 1 22 0 1830 143 0 54 chr13 43281838 43282152 -58591017 - AluSx SINE Alu -15 297 1 220 100 20 40 chr13 43285108 43285158 -58588011 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 224 307 0 4 chr13 43285252 43285342 -58587827 + MIR SINE MIR 59 146 -63 210 118 0 0 chr13 43286246 43286280 -58586889 + (CA)n Simple_repeat Simple_repeat 1 34 0 3012 213 76 58 chr13 43287398 43288293 -58584876 - L1MCb LINE L1 -4852 1193 563 228 35 0 0 chr13 43288293 43288322 -58584847 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 3012 213 76 58 chr13 43288322 43288894 -58584275 - L1MCb LINE L1 -5482 563 3 191 318 0 30 chr13 43289072 43289138 -58584031 + MIR SINE MIR 86 149 -113 210 294 0 0 chr13 43290274 43290325 -58582844 - MIR SINE MIR -59 149 99 1887 191 20 0 chr13 43290392 43290749 -58582420 - L1PA16 LINE L1 -5 6161 5798 1619 178 50 0 chr13 43290751 43291071 -58582098 + L1 LINE L1 3980 4315 -1831 831 322 37 7 chr13 43293037 43293335 -58579834 + L3 LINE CR1 1257 1563 -14 2352 91 0 0 chr13 43293493 43293789 -58579380 + AluSc SINE Alu 1 296 -13 603 254 99 17 chr13 43293950 43294131 -58579038 - MLT1J LTR MaLR -63 448 253 325 280 59 59 chr13 43294759 43294877 -58578292 - L2 LINE L2 0 3313 3196 314 286 92 8 chr13 43295282 43295401 -58577768 - MIR SINE MIR -121 141 13 198 0 0 0 chr13 43295528 43295550 -58577619 + (TG)n Simple_repeat Simple_repeat 1 22 0 269 353 33 49 chr13 43295798 43295982 -58577187 + MIR SINE MIR 3 183 -79 196 283 0 17 chr13 43296005 43296065 -58577104 - MER5B DNA MER1_type -83 95 37 2318 237 85 7 chr13 43296065 43296779 -58576390 + L1MC4a LINE L1 7039 7808 0 215 289 0 0 chr13 43296792 43296837 -58576332 - MER5B DNA MER1_type -129 49 5 432 319 19 12 chr13 43297776 43297936 -58575233 + MIR SINE MIR 92 252 -10 359 21 21 0 chr13 43297944 43297992 -58575177 + (TG)n Simple_repeat Simple_repeat 2 50 0 2485 202 63 42 chr13 43298423 43298654 -58574515 + L1 LINE L1 2699 2924 -3222 716 180 0 50 chr13 43298654 43298793 -58574376 - FLAM_C SINE Alu 0 133 2 2485 202 63 42 chr13 43298793 43299424 -58573745 + L1 LINE L1 2924 3579 -2567 322 356 23 52 chr13 43299634 43299808 -58573361 - MER91A DNA MER1_type 0 196 28 2196 118 3 13 chr13 43301180 43301494 -58571675 + AluY SINE Alu 1 311 0 249 328 74 26 chr13 43301860 43302049 -58571120 - MLT1L LTR MaLR -65 550 353 826 220 24 19 chr13 43302098 43302307 -58570862 - MLT1A1 LTR MaLR -133 232 23 904 148 148 0 chr13 43302714 43302896 -58570273 - MER3 DNA MER1_type 0 209 1 237 171 114 14 chr13 43303355 43303425 -58569744 + MER68 LTR ERV1 438 514 -48 295 308 115 0 chr13 43303723 43303853 -58569316 + MIR SINE MIR 118 262 0 627 112 9 26 chr13 43304385 43304501 -58568668 + LTR9B LTR ERV1 445 558 -86 1302 208 13 18 chr13 43305161 43305477 -58567692 + MLT1A1 LTR MaLR 50 365 0 250 322 85 5 chr13 43306031 43306230 -58566939 + L1ME LINE L1 5637 5851 -270 617 285 82 43 chr13 43306446 43306913 -58566256 - MLT1J LTR MaLR -7 455 19 22 56 0 0 chr13 43307142 43307178 -58565991 + AT_rich Low_complexity Low_complexity 1 36 0 248 273 40 40 chr13 43307487 43307586 -58565583 + L3 LINE CR1 632 730 -847 14167 180 38 25 chr13 43308375 43310109 -58563060 + L1MA4 LINE L1 1 1711 -4771 252 59 0 0 chr13 43310109 43310143 -58563026 + (CA)n Simple_repeat Simple_repeat 1 34 0 14167 180 38 25 chr13 43310143 43311507 -58561662 + L1MA4 LINE L1 1711 3056 -3426 742 173 0 50 chr13 43311507 43311646 -58561523 - FLAM_C SINE Alu 0 133 2 14167 180 38 25 chr13 43311646 43313972 -58559197 + L1MA4 LINE L1 3056 5489 -993 297 0 0 0 chr13 43313972 43314005 -58559164 + (CA)n Simple_repeat Simple_repeat 2 34 0 14167 180 38 25 chr13 43314005 43314726 -58558443 + L1MA4 LINE L1 5489 6199 -283 23 0 0 0 chr13 43314736 43314759 -58558410 + AT_rich Low_complexity Low_complexity 1 23 0 2119 207 80 65 chr13 43315109 43315820 -58557349 - MER21B LTR ERV1 -48 815 94 856 296 77 27 chr13 43316192 43316709 -58556460 - ERVL LTR ERVL -341 5423 4881 702 181 20 7 chr13 43316801 43316950 -58556219 + MLT1A1 LTR MaLR 204 354 -11 978 255 34 10 chr13 43316961 43317259 -58555910 - ERVL LTR ERVL -939 4825 4521 387 60 0 0 chr13 43317493 43317543 -58555626 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 214 104 21 21 chr13 43317586 43317634 -58555535 + (TTC)n Simple_repeat Simple_repeat 1 48 0 193 375 10 0 chr13 43319147 43319243 -58553926 - L2 LINE L2 -665 2649 2553 2335 81 0 34 chr13 43319599 43319921 -58553248 - AluY SINE Alu 0 311 1 324 70 0 0 chr13 43319964 43320007 -58553162 + (CA)n Simple_repeat Simple_repeat 1 43 0 298 253 0 0 chr13 43320727 43320806 -58552363 - MER116 DNA Mariner -1 79 1 255 309 106 24 chr13 43322021 43322144 -58551025 - L2 LINE L2 -1 3271 3139 471 268 3 13 chr13 43322442 43322594 -58550575 + MIR SINE MIR 8 143 -65 309 302 63 0 chr13 43322961 43323087 -58550082 - MIR3 SINE MIR -6 202 69 258 333 0 0 chr13 43323239 43323305 -58549864 - L2 LINE L2 -213 3059 2994 266 328 106 16 chr13 43323523 43323712 -58549457 + MIR SINE MIR 3 208 -54 22 0 0 0 chr13 43323908 43323930 -58549239 + AT_rich Low_complexity Low_complexity 1 22 0 2251 215 130 95 chr13 43325269 43326476 -58546693 + Charlie2a DNA MER1_type 1 1249 -1613 1253 120 32 33 chr13 43326480 43326739 -58546430 - THE1C LTR MaLR 0 428 158 864 97 0 9 chr13 43326739 43326852 -58546317 - AluSq/x SINE Alu -178 134 23 1052 134 0 0 chr13 43326853 43327002 -58546167 + AluSg/x SINE Alu 151 299 -13 35129 81 18 11 chr13 43327010 43333099 -58540070 + L1PA6 LINE L1 11 6141 -13 1203 106 6 18 chr13 43333099 43333297 -58539872 - THE1C LTR MaLR -153 202 1 582 177 21 95 chr13 43333313 43333470 -58539699 + Charlie2a DNA MER1_type 1257 1391 -1471 2115 107 3 7 chr13 43333470 43333759 -58539410 - AluSg SINE Alu -22 288 1 582 177 21 95 chr13 43333759 43333844 -58539325 + Charlie2a DNA MER1_type 1391 1481 -1381 21 0 0 0 chr13 43333846 43333867 -58539302 + AT_rich Low_complexity Low_complexity 1 21 0 3256 217 93 33 chr13 43333868 43334703 -58538466 + L1MDa LINE L1 3 787 -5753 2849 19 0 0 chr13 43334703 43335020 -58538149 + AluYb8 SINE Alu 1 317 -1 3256 217 93 33 chr13 43335020 43335388 -58537781 + L1MDa LINE L1 787 1132 -5408 1812 134 99 41 chr13 43335388 43335732 -58537437 - THE1B LTR MaLR 0 364 1 3256 217 93 33 chr13 43335732 43336660 -58536509 + L1MDa LINE L1 1132 2519 -4021 564 175 233 123 chr13 43336673 43336965 -58536204 + L1MD2 LINE L1 6010 6333 -26 784 228 72 50 chr13 43336965 43337324 -58535845 + Charlie2a DNA MER1_type 1496 1862 -1000 546 263 77 4 chr13 43337312 43337559 -58535610 + Charlie2a DNA MER1_type 2532 2796 -66 * 2087 224 91 33 chr13 43338151 43338853 -58534316 - HsTC2a DNA MER2_type 0 744 2 1806 281 20 92 chr13 43339187 43340256 -58532913 + L1M2 LINE L1 1 992 -5857 1371 217 22 12 chr13 43340260 43340769 -58532400 + L1M2 LINE L1 2733 3249 -3599 227 289 0 0 chr13 43340771 43340823 -58532346 + FRAM/FAM SINE Alu 2 53 -113 1270 189 26 10 chr13 43340857 43341159 -58532010 + L1MA4A LINE L1 5816 6122 -181 2222 92 3 13 chr13 43341162 43341466 -58531703 + AluY SINE Alu 1 301 -10 273 29 0 0 chr13 43341466 43341500 -58531669 + (TA)n Simple_repeat Simple_repeat 2 35 0 488 147 35 35 chr13 43341500 43341616 -58531553 + L1MA4A LINE L1 6182 6297 -6 354 167 7 65 chr13 43342026 43342164 -58531005 + GA-rich Low_complexity Low_complexity 2 131 0 1953 185 0 5 chr13 43342216 43342583 -58530586 + L1PB4 LINE L1 5786 6150 -6 2289 100 0 3 chr13 43342757 43343056 -58530113 + AluSg SINE Alu 1 298 -12 1921 270 94 21 chr13 43343094 43344085 -58529084 - L1ME LINE L1 -4996 1074 12 473 255 176 25 chr13 43344120 43344324 -58528845 - MIR SINE MIR -12 250 16 322 298 105 41 chr13 43344471 43344642 -58528527 - MER5A DNA MER1_type -1 188 7 316 273 224 22 chr13 43344758 43344941 -58528228 - MIR SINE MIR -37 225 6 971 206 43 123 chr13 43346322 43346719 -58526450 - MLT1A1 LTR MaLR 0 365 1 1710 171 7 23 chr13 43347119 43347424 -58525745 - AluJb SINE Alu -12 300 1 31 26 0 0 chr13 43347662 43347700 -58525469 + AT_rich Low_complexity Low_complexity 1 38 0 550 348 26 23 chr13 43347781 43348367 -58524802 - L1MC4a LINE L1 -1902 5906 5319 334 314 11 63 chr13 43348622 43348769 -58524400 - L1ME LINE L1 -449 5672 5536 2017 137 51 46 chr13 43348769 43349142 -58524027 - THE1C LTR MaLR 0 375 1 334 314 11 63 chr13 43349142 43349185 -58523984 - L1ME LINE L1 -585 5536 5492 1059 195 16 0 chr13 43349628 43349813 -58523356 - MER5A DNA MER1_type 0 189 2 414 316 13 53 chr13 43349914 43350081 -58523088 - L3b LINE CR1 -262 1321 1164 2230 87 7 0 chr13 43350081 43350367 -58522802 - AluY SINE Alu -23 288 1 414 316 13 53 chr13 43350367 43350424 -58522745 - L3b LINE CR1 -419 1164 1106 230 296 0 0 chr13 43350710 43350764 -58522405 - L2 LINE L2 0 3272 3219 548 173 87 0 chr13 43351642 43351746 -58521423 + L1M2c LINE L1 534 646 -6143 477 303 48 40 chr13 43351893 43352209 -58520960 + L1M4 LINE L1 3716 4037 -2109 2673 132 35 28 chr13 43352209 43352632 -58520537 - MSTB LTR MaLR 0 426 1 477 303 48 40 chr13 43352632 43352694 -58520475 + L1M4 LINE L1 4037 4097 -2049 10346 198 31 63 chr13 43352742 43354432 -58518737 + L1M2c LINE L1 4 1746 -5102 2088 139 10 0 chr13 43354432 43354734 -58518435 - AluSx SINE Alu -7 305 1 10346 198 31 63 chr13 43354734 43356834 -58516335 + L1M2c LINE L1 1746 3911 -2937 2206 117 0 7 chr13 43356834 43357141 -58516028 - AluSc SINE Alu -4 305 1 10346 198 31 63 chr13 43357141 43358683 -58514486 + L1M2c LINE L1 3911 5256 -1592 2377 86 7 3 chr13 43358683 43358984 -58514185 + AluSp SINE Alu 1 302 -11 10346 198 31 63 chr13 43358984 43358996 -58514173 + L1M2c LINE L1 5256 5267 -1581 553 80 0 13 chr13 43358996 43359071 -58514098 - THE1A LTR MaLR 0 355 282 309 79 0 0 chr13 43359060 43359098 -58514071 - THE1A LTR MaLR -317 38 1 * 22 35 0 0 chr13 43359802 43359831 -58513338 + AT_rich Low_complexity Low_complexity 1 29 0 229 361 131 0 chr13 43360462 43360592 -58512577 - L2 LINE L2 -5 3267 3121 1451 193 41 105 chr13 43360615 43360770 -58512399 - MER39 LTR ERV1 -2 666 503 1935 70 4 4 chr13 43360770 43361012 -58512157 + AluY SINE Alu 70 311 0 1451 193 41 105 chr13 43361012 43361409 -58511760 - MER39 LTR ERV1 -165 503 1 838 250 109 82 chr13 43361584 43362108 -58511061 + MLT1F LTR MaLR 5 542 0 351 232 65 72 chr13 43362569 43362707 -58510462 - L2 LINE L2 -2 3311 3175 354 308 45 32 chr13 43363059 43363215 -58509954 - L2 LINE L2 0 3313 3156 1736 223 138 5 chr13 43363222 43363649 -58509520 - MLT1D LTR MaLR 0 505 22 288 348 90 20 chr13 43363685 43363886 -58509283 - L2 LINE L2 -418 2896 2682 3377 288 120 26 chr13 43363886 43364726 -58508443 - L2 LINE L2 -1515 1799 1039 279 0 0 0 chr13 43364726 43364757 -58508412 + (CAAAC)n Simple_repeat Simple_repeat 2 32 0 3377 288 120 26 chr13 43364757 43365478 -58507691 - L2 LINE L2 -2275 1039 92 902 198 12 0 chr13 43365498 43365660 -58507509 - MER58B DNA MER1_type -10 331 168 286 289 70 40 chr13 43365892 43366093 -58507076 - L2 LINE L2 -857 2457 2251 308 330 9 9 chr13 43366760 43366869 -58506300 + MIR SINE MIR 33 141 -67 398 276 71 0 chr13 43369019 43369117 -58504052 - L2 LINE L2 0 3272 3168 692 300 113 61 chr13 43369408 43370287 -58502882 + L2 LINE L2 2378 3313 0 411 332 75 36 chr13 43370436 43370689 -58502480 - L2 LINE L2 -408 2906 2644 445 286 41 14 chr13 43370836 43370983 -58502186 + MIR SINE MIR 3 153 -109 2037 195 50 44 chr13 43373161 43373663 -58499506 + MLT1D LTR MaLR 1 505 0 433 239 26 8 chr13 43374383 43374500 -58498669 - MIR SINE MIR -50 212 94 230 248 51 103 chr13 43375344 43375461 -58497708 - MIR SINE MIR -145 117 7 2346 106 0 0 chr13 43375728 43376030 -58497139 + AluSx SINE Alu 1 302 -10 2377 131 84 30 chr13 43376170 43376575 -58496594 + MSTA LTR MaLR 2 428 0 551 255 34 20 chr13 43376821 43376970 -58496199 - MLT1D LTR MaLR -354 151 1 384 373 22 13 chr13 43376974 43377199 -58495970 - L3 LINE CR1 -81 1496 1270 369 311 119 56 chr13 43377524 43378121 -58495048 + L2 LINE L2 2651 3310 -3 1043 249 47 0 chr13 43378327 43378540 -58494629 - MER58A DNA MER1_type 0 224 2 2268 144 29 27 chr13 43378709 43379083 -58494086 - THE1C LTR MaLR 0 375 1 389 352 65 0 chr13 43381020 43381219 -58491950 + LTR33 LTR ERVL 3 214 -307 433 216 196 14 chr13 43381283 43381431 -58491738 + LTR33 LTR ERVL 329 503 -18 480 295 41 97 chr13 43381548 43381648 -58491521 + L1M4 LINE L1 4624 4728 -1418 1464 201 3 41 chr13 43381648 43381966 -58491203 - AluJo SINE Alu -6 306 1 480 295 41 97 chr13 43381966 43382077 -58491092 + L1M4 LINE L1 4728 4844 -1302 2952 79 3 0 chr13 43382077 43382431 -58490738 + THE1A LTR MaLR 1 355 0 12008 101 16 1 chr13 43382431 43383987 -58489182 + THE1A-int LTR MaLR 1 1580 0 2711 88 35 0 chr13 43383987 43384330 -58488839 + THE1A LTR MaLR 1 355 0 480 295 41 97 chr13 43384330 43384600 -58488569 + L1M4 LINE L1 4841 5081 -1065 295 250 115 45 chr13 43384726 43384882 -58488287 + L1MEd LINE L1 4 170 -5949 1364 276 91 56 chr13 43385180 43385660 -58487509 + L1MEd LINE L1 572 1008 -5123 1992 157 0 0 chr13 43385660 43385953 -58487216 - AluSx SINE Alu -19 293 1 1364 276 91 56 chr13 43385953 43386459 -58486710 + L1MEd LINE L1 1008 1495 -4636 186 254 0 0 chr13 43386785 43386852 -58486317 + (TA)n Simple_repeat Simple_repeat 2 68 0 226 184 53 66 chr13 43387312 43387388 -58485781 + L1ME4a LINE L1 5989 6063 -58 689 261 107 18 chr13 43387812 43388138 -58485031 + MLT1J1 LTR MaLR 1 355 -91 1616 99 37 0 chr13 43388689 43388931 -58484238 + Tigger7 DNA MER2_type 2329 2579 -8 393 354 86 41 chr13 43391360 43391674 -58481495 + L2 LINE L2 2857 3184 -88 1450 116 18 109 chr13 43391674 43391896 -58481273 + Tigger2a DNA MER2_type 2 194 -2514 2309 109 0 0 chr13 43391896 43392207 -58480962 - AluY SINE Alu 0 311 1 1450 116 18 109 chr13 43392207 43392269 -58480900 + Tigger2a DNA MER2_type 194 260 -174 682 157 20 0 chr13 43392270 43392372 -58480797 + AluSq SINE Alu 2 105 -208 22 56 0 0 chr13 43392976 43393012 -58480157 + AT_rich Low_complexity Low_complexity 1 36 0 1540 123 0 0 chr13 43393031 43393235 -58479934 + AluSq SINE Alu 98 301 -12 1193 169 5 0 chr13 43393235 43393419 -58479750 + Tigger2a DNA MER2_type 250 434 0 216 0 0 0 chr13 43393656 43393680 -58479489 + (T)n Simple_repeat Simple_repeat 1 24 0 577 318 45 18 chr13 43394958 43395178 -58477991 + MIR SINE MIR 19 244 -18 191 248 181 57 chr13 43395685 43395790 -58477379 + MIR3 SINE MIR 91 208 0 288 368 119 0 chr13 43395794 43395987 -58477182 - L3 LINE CR1 -148 1429 1214 1745 142 130 6 chr13 43400305 43400629 -58472540 - THE1B LTR MaLR 0 364 1 279 0 0 0 chr13 43400672 43400703 -58472466 + (CA)n Simple_repeat Simple_repeat 1 31 0 2206 200 49 12 chr13 43400705 43401182 -58471987 - MLT2B1 LTR ERVL -20 534 4 2208 68 53 0 chr13 43401183 43401464 -58471705 + AluY SINE Alu 2 297 -14 1048 304 53 11 chr13 43404077 43404436 -58468733 + L2 LINE L2 2940 3313 0 236 135 0 39 chr13 43404637 43404689 -58468480 + (CATA)n Simple_repeat Simple_repeat 2 51 0 412 261 43 17 chr13 43405545 43405660 -58467509 + L2 LINE L2 3196 3313 0 257 230 14 0 chr13 43405820 43405894 -58467275 + (CATA)n Simple_repeat Simple_repeat 3 77 0 1644 261 90 58 chr13 43406265 43406996 -58466173 + L2 LINE L2 1205 1959 -1355 2414 50 7 7 chr13 43407592 43407892 -58465277 - AluY SINE Alu -11 300 1 406 183 0 0 chr13 43407930 43408001 -58465168 - AluJ/FLAM SINE Alu -238 74 4 229 302 45 28 chr13 43410234 43410413 -58462756 + L2 LINE L2 1789 1970 -1344 963 273 77 75 chr13 43410545 43411157 -58462012 + MER21B LTR ERV1 100 712 -151 269 238 0 32 chr13 43411246 43411309 -58461860 - MIR SINE MIR -50 212 152 366 283 40 73 chr13 43412019 43412069 -58461100 - MIR SINE MIR -11 251 201 1544 209 0 19 chr13 43412069 43412376 -58460793 - AluJo SINE Alu -11 301 1 366 283 40 73 chr13 43412376 43412394 -58460775 - MIR SINE MIR -61 201 184 2197 47 0 0 chr13 43412394 43412649 -58460520 - AluY SINE Alu -13 298 44 366 283 40 73 chr13 43412649 43412756 -58460413 - MIR SINE MIR -78 184 81 1056 305 41 23 chr13 43413131 43413521 -58459648 - L3 LINE CR1 -1 1576 1180 483 263 34 8 chr13 43414044 43414162 -58459007 + L2 LINE L2 3192 3312 -1 1284 163 49 52 chr13 43414341 43414666 -58458503 - MER33 DNA MER1_type 0 324 1 25 31 0 0 chr13 43417751 43417783 -58455386 + AT_rich Low_complexity Low_complexity 1 32 0 1795 153 0 38 chr13 43418196 43418510 -58454659 + AluJb SINE Alu 2 303 -9 353 318 121 9 chr13 43418660 43418883 -58454286 - MIR SINE MIR 0 262 15 941 146 7 0 chr13 43419353 43419497 -58453672 - FRAM SINE Alu -32 144 1 340 252 140 0 chr13 43420065 43420172 -58452997 - L2 LINE L2 0 3313 3192 288 333 71 7 chr13 43422512 43422653 -58450516 - MIR SINE MIR -92 170 21 209 250 21 0 chr13 43425488 43425536 -58447633 - L2 LINE L2 -10 3303 3255 210 71 0 0 chr13 43426802 43426830 -58446339 + (TG)n Simple_repeat Simple_repeat 2 29 0 222 257 0 119 chr13 43426972 43427073 -58446096 - MIR3 SINE MIR -31 177 89 184 310 141 0 chr13 43427328 43427399 -58445770 - MIR SINE MIR -71 137 57 520 308 66 91 chr13 43427764 43428173 -58444996 - L2 LINE L2 0 3272 2874 240 35 0 0 chr13 43429146 43429175 -58443994 + (T)n Simple_repeat Simple_repeat 1 29 0 224 300 29 0 chr13 43429591 43429661 -58443508 - MIR SINE MIR -64 144 73 476 285 119 48 chr13 43429913 43430374 -58442795 - L2 LINE L2 -103 3210 2711 2630 42 0 3 chr13 43434188 43434500 -58438669 + AluY SINE Alu 1 311 0 1104 250 205 19 chr13 43435999 43436518 -58436651 - L2 LINE L2 -2 3311 2708 407 245 9 19 chr13 43437700 43437806 -58435363 + MLT1J2 LTR MaLR 344 448 -2 321 237 26 103 chr13 43438440 43438596 -58434573 + L2 LINE L2 3169 3312 -1 326 329 194 17 chr13 43439763 43440000 -58433169 + L2 LINE L2 2805 3083 -230 189 0 0 0 chr13 43440052 43440073 -58433096 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1176 145 61 0 chr13 43440128 43440356 -58432813 + MER33 DNA MER1_type 1 242 -82 312 305 47 25 chr13 43440401 43440840 -58432329 - L1M4b LINE L1 -5002 1945 1346 430 189 28 63 chr13 43441496 43441539 -58431630 + L2 LINE L2 3114 3157 -156 1829 170 58 6 chr13 43441539 43441869 -58431300 + MER7A DNA MER2_type 1 345 -1 430 189 28 63 chr13 43441869 43441968 -58431201 + L2 LINE L2 3157 3251 -62 812 241 109 42 chr13 43442309 43442620 -58430549 - MARNA DNA Mariner -88 498 167 1839 167 42 3 chr13 43442997 43443327 -58429842 + MER2 DNA MER2_type 2 344 0 1053 241 34 40 chr13 43444723 43445076 -58428093 + L2 LINE L2 1417 1767 -1547 1182 165 62 50 chr13 43445076 43445318 -58427851 - AluJo SINE Alu -14 298 54 1504 268 77 12 chr13 43445319 43445800 -58427369 + L2 LINE L2 1759 2270 -1044 31 0 0 0 chr13 43445835 43445866 -58427303 + AT_rich Low_complexity Low_complexity 1 31 0 7796 19 0 0 chr13 43446286 43447269 -58425900 + L1PA3 LINE L1 5172 6154 -1 330 268 177 24 chr13 43447603 43447767 -58425402 + MIR SINE MIR 74 262 0 278 233 12 0 chr13 43448490 43448576 -58424593 + (CCA)n Simple_repeat Simple_repeat 2 88 0 475 283 82 38 chr13 43448617 43448801 -58424368 - MIR SINE MIR -48 214 23 198 348 14 0 chr13 43448797 43448866 -58424303 + L2 LINE L2 3244 3313 0 * 365 320 16 0 chr13 43449457 43449585 -58423584 + L2 LINE L2 2554 2683 -631 2151 136 12 18 chr13 43449835 43450166 -58423003 - MER1B DNA MER1_type -10 329 1 184 232 143 0 chr13 43450177 43450233 -58422936 + L2 LINE L2 3250 3313 0 526 212 119 8 chr13 43450253 43450371 -58422798 - FLAM_A SINE Alu -2 131 1 308 260 133 77 chr13 43450701 43450882 -58422287 + MLT1L LTR MaLR 200 390 -225 1300 206 3 50 chr13 43450961 43451094 -58422075 + AluJo SINE Alu 13 128 -184 2817 7 0 0 chr13 43451094 43451401 -58421768 + AluYa5 SINE Alu 1 307 -4 1300 206 3 50 chr13 43451401 43451549 -58421620 + AluJo SINE Alu 128 281 -31 228 226 57 0 chr13 43452275 43452328 -58420841 + L2 LINE L2 3254 3309 -4 338 399 19 0 chr13 43452494 43452652 -58420517 - L3 LINE CR1 -74 1503 1343 261 271 158 30 chr13 43452755 43452888 -58420281 + MIR SINE MIR 83 232 -30 2316 72 0 3 chr13 43453198 43453490 -58419679 - AluY SINE Alu -20 291 1 455 281 51 22 chr13 43453568 43453746 -58419423 - MIR SINE MIR -27 235 53 212 57 0 29 chr13 43454817 43454838 -58418331 + (CAAAC)n Simple_repeat Simple_repeat 1 54 0 212 57 0 29 chr13 43454838 43454873 -58418296 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 284 308 20 77 chr13 43455017 43455212 -58417957 - MIR SINE MIR -3 259 76 189 0 0 0 chr13 43456108 43456129 -58417040 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 379 316 106 55 chr13 43456720 43456976 -58416193 + MLT1J LTR MaLR 235 503 -8 802 144 352 37 chr13 43457036 43457321 -58415848 - Tigger3(Golem) DNA MER2_type -24 3005 2 34 89 0 0 chr13 43457409 43457499 -58415670 + AT_rich Low_complexity Low_complexity 1 90 0 201 431 65 0 chr13 43457526 43457649 -58415520 + L2 LINE L2 3141 3271 -1 246 62 0 0 chr13 43460475 43460507 -58412662 + (TG)n Simple_repeat Simple_repeat 1 32 0 2272 96 0 13 chr13 43460625 43460928 -58412241 - AluSg SINE Alu -11 299 1 195 42 0 0 chr13 43460975 43460999 -58412170 + (A)n Simple_repeat Simple_repeat 1 24 0 618 184 41 77 chr13 43461093 43461289 -58411880 + MER53 DNA DNA 1 189 0 21 36 0 0 chr13 43462979 43463007 -58410162 + AT_rich Low_complexity Low_complexity 1 28 0 685 238 31 54 chr13 43464481 43464704 -58408465 + MIR SINE MIR 45 262 0 787 202 113 101 chr13 43466481 43466817 -58406352 + L1MD2 LINE L1 5981 6320 -39 827 142 0 0 chr13 43466824 43466951 -58406218 - AluJb SINE Alu -5 307 181 577 294 42 60 chr13 43467650 43467915 -58405254 + MIR SINE MIR 3 262 0 1596 173 7 34 chr13 43469470 43469765 -58403404 - AluJo SINE Alu -19 293 7 494 202 55 93 chr13 43469915 43470098 -58403071 - MER112 DNA MER1_type -83 177 2 22 35 0 0 chr13 43471803 43471832 -58401337 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 43472435 43472456 -58400713 + AT_rich Low_complexity Low_complexity 1 21 0 5109 103 9 3 chr13 43472799 43473537 -58399632 - L1PA12 LINE L1 0 6168 5426 293 133 0 0 chr13 43473540 43473585 -58399584 - L1PA12 LINE L1 -775 5386 5342 * 4139 156 27 4 chr13 43473583 43474364 -58398805 + L1PA12 LINE L1 4544 5342 -804 216 363 50 0 chr13 43474406 43474486 -58398683 - L2 LINE L2 -2 3311 3228 280 229 206 53 chr13 43474635 43474805 -58398364 + MIR SINE MIR 48 243 -19 2042 128 3 3 chr13 43474901 43475205 -58397964 + AluSx SINE Alu 1 304 -8 224 300 29 0 chr13 43476818 43476888 -58396281 + MIR SINE MIR 73 144 -64 225 0 0 0 chr13 43477304 43477329 -58395840 + (A)n Simple_repeat Simple_repeat 1 25 0 850 212 67 40 chr13 43477884 43478198 -58394971 + MSTD LTR MaLR 45 396 0 192 200 0 0 chr13 43478303 43478348 -58394821 + (TA)n Simple_repeat Simple_repeat 1 45 0 231 226 71 0 chr13 43478351 43478435 -58394734 + L1MC4 LINE L1 6614 6703 -1339 353 252 84 98 chr13 43478465 43478501 -58394668 - HAL1 LINE L1 -1479 1028 993 1678 185 3 24 chr13 43478501 43478799 -58394370 + AluJo SINE Alu 1 292 -20 353 252 84 98 chr13 43478799 43478976 -58394193 - HAL1 LINE L1 -1514 993 818 304 231 0 0 chr13 43479373 43479425 -58393744 + MIR SINE MIR 2 53 -209 2140 188 24 15 chr13 43479568 43480031 -58393138 + MLT1C LTR MaLR 1 467 0 376 330 101 38 chr13 43480474 43480683 -58392486 - MIR SINE MIR -13 249 28 225 94 0 0 chr13 43481896 43481928 -58391241 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 678 163 0 0 chr13 43483743 43483884 -58389285 + GA-rich Low_complexity Low_complexity 2 142 0 422 229 139 63 chr13 43484384 43484607 -58388562 + L1ME LINE L1 5381 5620 -501 2730 33 0 0 chr13 43484707 43485014 -58388155 - AluY SINE Alu -4 307 1 636 259 106 24 chr13 43485254 43485952 -58387217 + L1MD2 LINE L1 5309 6165 -5 1719 169 3 44 chr13 43486083 43486403 -58386766 - AluJo SINE Alu -3 309 3 1878 80 0 16 chr13 43487013 43487297 -58385872 + AluSg SINE Alu 37 316 0 571 273 102 62 chr13 43489238 43489366 -58383803 - MLT1F LTR MaLR -252 290 169 2367 68 10 13 chr13 43489366 43489673 -58383496 - AluSc SINE Alu -3 306 1 571 273 102 62 chr13 43489673 43489819 -58383350 - MLT1F LTR MaLR -373 169 5 401 290 145 24 chr13 43490118 43490325 -58382844 - MIR SINE MIR -26 236 5 295 202 262 0 chr13 43490531 43490615 -58382554 - MER2 DNA MER2_type -172 173 68 395 316 156 28 chr13 43490815 43491033 -58382136 + MIR SINE MIR 8 253 -9 1279 158 194 0 chr13 43492053 43492306 -58380863 + AluJb SINE Alu 1 302 0 971 201 64 17 chr13 43492403 43492488 -58380681 - MER39 LTR ERV1 -12 695 615 2378 119 23 0 chr13 43492488 43492842 -58380327 - THE1B LTR MaLR 0 364 3 971 201 64 17 chr13 43492842 43493069 -58380100 - MER39 LTR ERV1 -92 615 331 598 178 0 46 chr13 43493138 43493312 -58379857 + GA-rich Low_complexity Low_complexity 2 167 0 222 353 19 66 chr13 43493725 43493983 -58379186 - L2 LINE L2 -601 2713 2468 354 211 63 11 chr13 43494640 43494735 -58378434 + L1ME3A LINE L1 6062 6161 -9 307 330 75 0 chr13 43494898 43495004 -58378165 - L2 LINE L2 -8 3264 3151 1455 63 117 5 chr13 43495007 43495213 -58377956 - MER30 DNA MER1_type 0 230 2 22 0 0 0 chr13 43496721 43496743 -58376426 + AT_rich Low_complexity Low_complexity 1 22 0 1876 151 7 10 chr13 43496797 43497101 -58376068 - AluSx SINE Alu -8 304 2 270 281 73 61 chr13 43497226 43497390 -58375779 + MER5B DNA MER1_type 13 178 0 2137 129 13 0 chr13 43499510 43499813 -58373356 + AluSx SINE Alu 1 307 -5 2564 60 0 0 chr13 43499817 43500119 -58373050 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 43500257 43500285 -58372884 + AT_rich Low_complexity Low_complexity 1 28 0 454 275 183 2 chr13 43502734 43502914 -58370255 - MIR SINE MIR -51 211 1 1937 153 3 3 chr13 43502946 43503246 -58369923 - AluJb SINE Alu -12 300 1 21 71 0 0 chr13 43503343 43503385 -58369784 + AT_rich Low_complexity Low_complexity 1 42 0 456 288 33 14 chr13 43504805 43504988 -58368181 + MIR SINE MIR 13 262 0 255 258 15 15 chr13 43505083 43505149 -58368020 + MIR SINE MIR 26 91 -171 595 230 45 22 chr13 43505383 43505561 -58367608 - MIR SINE MIR -13 249 68 23 0 0 0 chr13 43505888 43505911 -58367258 + AT_rich Low_complexity Low_complexity 1 23 0 328 343 59 29 chr13 43505930 43506169 -58367000 + L3 LINE CR1 664 909 -668 583 256 52 52 chr13 43506227 43506399 -58366770 + MER5B DNA MER1_type 1 172 -6 806 179 95 0 chr13 43506603 43506771 -58366398 + MER5A DNA MER1_type 3 186 -3 23 54 0 0 chr13 43508074 43508111 -58365058 + AT_rich Low_complexity Low_complexity 1 37 0 272 287 43 43 chr13 43508564 43508658 -58364511 - L2 LINE L2 -5 3308 3215 493 342 70 37 chr13 43509903 43510146 -58363023 + MIR SINE MIR 4 254 -8 180 77 0 0 chr13 43510147 43510173 -58362996 + (TTA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr13 43510942 43510965 -58362204 + AT_rich Low_complexity Low_complexity 1 23 0 261 217 76 12 chr13 43511133 43511219 -58361950 + MIR SINE MIR 34 133 -75 22 0 0 0 chr13 43512194 43512216 -58360953 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 43512501 43512532 -58360637 + AT_rich Low_complexity Low_complexity 1 31 0 2269 107 0 0 chr13 43513482 43513791 -58359378 - AluY SINE Alu -2 309 1 2749 245 106 48 chr13 43514878 43515179 -58357990 + L1MC4 LINE L1 6269 6551 -1257 219 36 0 0 chr13 43515179 43515207 -58357962 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2749 245 106 48 chr13 43515207 43516325 -58356844 + L1MC4 LINE L1 6551 7705 -103 573 301 112 65 chr13 43516366 43516688 -58356481 + L2 LINE L2 2932 3268 -4 203 179 0 0 chr13 43517156 43517195 -58355974 + T-rich Low_complexity Low_complexity 5 43 0 284 308 143 22 chr13 43517435 43517617 -58355552 + MIR SINE MIR 9 212 -50 2269 92 0 7 chr13 43517760 43518063 -58355106 - AluSx SINE Alu -11 301 1 197 300 14 43 chr13 43518230 43518300 -58354869 - L2 LINE L2 -3 3269 3202 238 314 12 47 chr13 43518507 43518593 -58354576 - L2 LINE L2 -258 3014 2932 26 0 0 0 chr13 43518726 43518752 -58354417 + AT_rich Low_complexity Low_complexity 1 26 0 266 301 91 14 chr13 43519048 43519191 -58353978 - L2 LINE L2 -942 2372 2219 806 228 85 88 chr13 43519342 43519764 -58353405 + HAL1 LINE L1 1388 1808 -699 1719 215 6 3 chr13 43520030 43520356 -58352813 + MLT1A1 LTR MaLR 39 365 0 202 224 0 0 chr13 43520383 43520432 -58352737 + A-rich Low_complexity Low_complexity 1 49 0 490 231 94 80 chr13 43520434 43520733 -58352436 + HAL1 LINE L1 2122 2424 -83 308 349 94 56 chr13 43521146 43521818 -58351351 - L2 LINE L2 -437 2877 2179 583 309 15 45 chr13 43521818 43522083 -58351086 + MIR SINE MIR 3 259 -3 2194 112 3 0 chr13 43522334 43522630 -58350539 - AluY SINE Alu -14 297 1 1869 138 0 4 chr13 43522656 43522924 -58350245 - AluSx SINE Alu -43 269 3 225 94 0 0 chr13 43523089 43523121 -58350048 + (CA)n Simple_repeat Simple_repeat 1 32 0 255 307 27 13 chr13 43523158 43523233 -58349936 - L3b LINE CR1 -114 1469 1394 669 258 84 18 chr13 43523628 43523853 -58349316 + MIR SINE MIR 20 259 -3 561 170 0 0 chr13 43524278 43524372 -58348797 + AluSg/x SINE Alu 196 289 -23 1587 178 29 0 chr13 43525076 43525352 -58347817 + AluJb SINE Alu 1 284 -28 713 221 0 8 chr13 43525686 43525817 -58347352 + FLAM_C SINE Alu 4 133 -10 1839 151 60 26 chr13 43525981 43526332 -58346837 + MLT1A1 LTR MaLR 3 365 0 813 273 61 68 chr13 43526337 43526587 -58346582 + L1MC4a LINE L1 5349 5599 -2209 725 187 0 0 chr13 43526587 43526710 -58346459 + FLAM_C SINE Alu 1 123 -10 813 273 61 68 chr13 43526710 43527002 -58346167 + L1MC4a LINE L1 5599 5887 -1921 280 394 53 0 chr13 43528099 43528269 -58344900 - L2 LINE L2 -861 2453 2275 188 222 74 19 chr13 43528283 43528337 -58344832 - L2 LINE L2 -1 3271 3215 1364 176 48 58 chr13 43529204 43529517 -58343652 - AluJo SINE Alu 0 312 3 22 35 0 0 chr13 43529551 43529580 -58343589 + AT_rich Low_complexity Low_complexity 1 29 0 504 319 72 25 chr13 43529598 43529833 -58343336 - MIR SINE MIR -6 256 11 758 323 184 39 chr13 43530286 43532017 -58341152 + L2 LINE L2 290 2292 -1022 518 236 36 0 chr13 43532017 43532127 -58341042 + MER81 DNA DNA 1 114 0 758 323 184 39 chr13 43532127 43532188 -58340981 + L2 LINE L2 2292 2343 -971 1913 131 62 3 chr13 43532199 43532520 -58340649 + MER47A DNA MER2_type 27 366 0 256 297 135 0 chr13 43532521 43532632 -58340537 + L2 LINE L2 2343 2468 -846 21 0 0 0 chr13 43532765 43532786 -58340383 + AT_rich Low_complexity Low_complexity 1 21 0 747 182 0 0 chr13 43532926 43533058 -58340111 - FLAM_C SINE Alu -1 132 1 2142 104 3 0 chr13 43533705 43534002 -58339167 - AluY SINE Alu -13 298 1 215 349 104 9 chr13 43535192 43535298 -58337871 - MIR SINE MIR -63 145 30 638 264 62 16 chr13 43535386 43535628 -58337541 + L2 LINE L2 3056 3308 -5 336 370 91 8 chr13 43536319 43536573 -58336596 + L2 LINE L2 2469 2743 -571 414 0 0 0 chr13 43537625 43537671 -58335498 + (CA)n Simple_repeat Simple_repeat 1 46 0 318 271 193 41 chr13 43539579 43539797 -58333372 - L3 LINE CR1 -8 1569 1319 203 213 0 53 chr13 43540653 43540728 -58332441 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 2779 13 0 9 chr13 43540894 43541233 -58331936 - AluYb8 SINE Alu 0 336 1 377 206 14 0 chr13 43541245 43541318 -58331851 - MER58B DNA MER1_type -3 338 265 203 189 0 0 chr13 43541818 43541855 -58331314 + A-rich Low_complexity Low_complexity 1 37 0 280 285 317 0 chr13 43542631 43542817 -58330352 + MIR SINE MIR 6 250 -12 216 0 0 0 chr13 43542835 43542859 -58330310 + (TTG)n Simple_repeat Simple_repeat 2 25 0 277 337 92 11 chr13 43544818 43545002 -58328167 + L2 LINE L2 3095 3293 -20 226 282 115 52 chr13 43546547 43546799 -58326370 + L1ME LINE L1 5343 5610 -511 22 0 0 0 chr13 43546956 43546978 -58326191 + AT_rich Low_complexity Low_complexity 1 22 0 2245 80 3 3 chr13 43547469 43547768 -58325401 + AluSq SINE Alu 1 299 -14 951 155 0 0 chr13 43548404 43548552 -58324617 - AluJb SINE Alu -7 305 158 461 171 32 82 chr13 43548552 43548710 -58324459 - L1MC5 LINE L1 -394 7567 7418 2440 75 3 0 chr13 43549706 43550011 -58323158 + AluY SINE Alu 1 306 -5 711 69 0 0 chr13 43550486 43550588 -58322581 + (TCCA)n Simple_repeat Simple_repeat 1 102 0 216 260 27 14 chr13 43550627 43550700 -58322469 + GA-rich Low_complexity Low_complexity 3 76 0 290 283 292 12 chr13 43550802 43551092 -58322077 - L2 LINE L2 -232 3081 2731 1363 235 131 12 chr13 43551135 43551539 -58321630 + LTR40a LTR ERVL 68 519 0 237 243 126 39 chr13 43551649 43551752 -58321417 - MIR SINE MIR -143 119 8 2244 95 3 23 chr13 43551823 43552127 -58321042 + AluSc SINE Alu 1 298 -11 209 174 0 43 chr13 43552178 43552224 -58320945 + (TATG)n Simple_repeat Simple_repeat 2 45 0 1302 181 0 30 chr13 43553082 43553347 -58319822 - L1MA8 LINE L1 -287 6004 5748 226 296 116 6 chr13 43553656 43553828 -58319341 - L1MEd LINE L1 -1587 4542 4352 735 176 15 15 chr13 43553869 43554005 -58319164 - AluJo SINE Alu -176 136 1 547 290 116 37 chr13 43554489 43554893 -58318276 - L1MEd LINE L1 -2579 3550 3115 764 167 6 0 chr13 43554961 43555117 -58318052 - L1MA4 LINE L1 -7 6293 6137 891 292 127 15 chr13 43555129 43555855 -58317314 - L1MEd LINE L1 -3137 2992 2186 821 189 61 0 chr13 43556325 43556489 -58316680 + MER58B DNA MER1_type 168 341 0 806 298 112 27 chr13 43556580 43557453 -58315716 - L1MEd LINE L1 -4771 1539 561 255 208 34 114 chr13 43557527 43557676 -58315493 - L1MEd LINE L1 -5903 216 80 535 271 131 27 chr13 43558068 43558289 -58314880 + MIR SINE MIR 19 262 0 43 101 0 0 chr13 43558949 43559097 -58314072 + AT_rich Low_complexity Low_complexity 1 148 0 23 0 0 0 chr13 43559734 43559757 -58313412 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 43560483 43560509 -58312660 + AT_rich Low_complexity Low_complexity 1 26 0 219 36 0 0 chr13 43560677 43560705 -58312464 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2044 89 7 14 chr13 43560708 43560990 -58312179 - AluSc SINE Alu -29 280 1 439 262 96 70 chr13 43562469 43562698 -58310471 - MIR SINE MIR -15 247 13 6942 34 2 0 chr13 43563286 43564112 -58309057 - L1PA3 LINE L1 0 6155 5328 * 12758 26 1 1 chr13 43564111 43565644 -58307525 + L1PA3 LINE L1 3820 5353 -793 669 226 142 24 chr13 43567646 43567858 -58305311 + MIR SINE MIR 24 260 -2 190 278 222 0 chr13 43567878 43567950 -58305219 - L2 LINE L2 -6 3266 3179 248 379 40 17 chr13 43567952 43568126 -58305043 - L2 LINE L2 -229 3043 2866 21 71 0 0 chr13 43568679 43568721 -58304448 + AT_rich Low_complexity Low_complexity 1 42 0 267 326 32 21 chr13 43569093 43569188 -58303981 + MIR SINE MIR 48 143 -119 477 307 127 57 chr13 43569213 43569457 -58303712 + MIR SINE MIR 2 262 0 2488 211 58 34 chr13 43569491 43570082 -58303087 - MER77 LTR ERV1 0 605 1 564 286 95 22 chr13 43570085 43570316 -58302853 - MIR SINE MIR -13 249 2 23 54 0 0 chr13 43571313 43571350 -58301819 + AT_rich Low_complexity Low_complexity 1 37 0 890 248 28 0 chr13 43571920 43572134 -58301035 + MIR SINE MIR 42 261 -1 410 257 146 18 chr13 43573452 43573623 -58299546 - L2 LINE L2 -7 3306 3114 204 40 0 0 chr13 43576646 43576671 -58296498 + (TG)n Simple_repeat Simple_repeat 2 26 0 1864 116 0 8 chr13 43577080 43577338 -58295831 + AluSx SINE Alu 5 260 -52 222 37 0 0 chr13 43577345 43577372 -58295797 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr13 43577812 43577834 -58295335 + AT_rich Low_complexity Low_complexity 1 22 0 1392 204 11 21 chr13 43579558 43579843 -58293326 + AluJo SINE Alu 1 282 -30 280 266 25 0 chr13 43579919 43579998 -58293171 + (TAG)n Simple_repeat Simple_repeat 2 82 0 963 271 57 0 chr13 43579998 43580242 -58292927 - MIR SINE MIR 0 262 5 29 70 0 0 chr13 43580437 43580494 -58292675 + AT_rich Low_complexity Low_complexity 1 57 0 2167 248 58 25 chr13 43580790 43581467 -58291702 - MER21B LTR ERV1 -152 711 13 201 295 195 21 chr13 43581497 43581687 -58291482 + L3 LINE CR1 1299 1521 -56 1597 113 16 4 chr13 43582126 43582373 -58290796 + L1PA10 LINE L1 5919 6168 0 1942 83 0 0 chr13 43582528 43582780 -58290389 + AluY SINE Alu 57 308 -3 2211 120 7 0 chr13 43583283 43583591 -58289578 - AluSg SINE Alu 0 310 1 1773 166 13 23 chr13 43585044 43585346 -58287823 + AluJo SINE Alu 2 300 -12 1057 263 175 21 chr13 43586081 43586560 -58286609 + L2 LINE L2 2234 2786 -528 13605 23 0 1 chr13 43586563 43588934 -58284235 - L1PA2 LINE L1 0 6155 3788 4059 40 0 0 chr13 43588936 43589437 -58283732 + L1PA2 LINE L1 3300 3800 -2346 703 242 263 14 chr13 43589438 43589813 -58283356 + L2 LINE L2 2779 3232 -81 1925 106 67 0 chr13 43589885 43590167 -58283002 - AluSc SINE Alu -8 301 1 272 246 0 0 chr13 43590177 43590246 -58282923 + MLT1J LTR MaLR 443 511 0 210 196 65 22 chr13 43590246 43590292 -58282877 + L2 LINE L2 3210 3257 -15 348 194 0 60 chr13 43590854 43590947 -58282222 + L1ME3A LINE L1 6079 6164 0 639 263 52 56 chr13 43591199 43591431 -58281738 - MIR SINE MIR -10 252 22 2069 148 120 5 chr13 43591572 43591956 -58281213 + MSTA LTR MaLR 1 428 0 1345 201 111 30 chr13 43592187 43592619 -58280550 + MLT1C LTR MaLR 1 467 0 41 27 0 40 chr13 43593662 43593736 -58279433 + AT_rich Low_complexity Low_complexity 1 71 0 192 135 0 0 chr13 43594135 43594172 -58278997 + (TA)n Simple_repeat Simple_repeat 1 37 0 1890 150 14 99 chr13 43594579 43595005 -58278164 - MLT1B LTR MaLR 0 390 1 460 294 71 79 chr13 43596209 43596563 -58276606 - L2 LINE L2 -916 2398 2048 224 296 0 0 chr13 43596634 43596688 -58276481 + L2 LINE L2 3217 3270 -2 21 36 0 0 chr13 43597374 43597402 -58275767 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 43598439 43598460 -58274709 + AT_rich Low_complexity Low_complexity 1 21 0 2460 77 0 0 chr13 43598706 43599016 -58274153 + AluY SINE Alu 1 310 -1 21 36 0 0 chr13 43599040 43599068 -58274101 + AT_rich Low_complexity Low_complexity 1 28 0 190 323 177 0 chr13 43600112 43600208 -58272961 - L2 LINE L2 0 3313 3201 256 333 56 40 chr13 43600569 43600767 -58272402 - L2 LINE L2 -560 2754 2554 216 275 58 75 chr13 43600798 43600918 -58272251 - L2 LINE L2 -896 2418 2301 534 229 79 24 chr13 43600954 43601180 -58271989 - MER106B DNA MER1_type 0 1059 1 270 335 149 19 chr13 43604406 43604621 -58268548 - MIR SINE MIR -9 253 11 243 192 19 0 chr13 43605221 43605273 -58267896 + (TG)n Simple_repeat Simple_repeat 1 53 0 192 170 0 0 chr13 43605289 43605342 -58267827 + (TA)n Simple_repeat Simple_repeat 2 54 0 598 197 0 24 chr13 43605440 43605567 -58267602 + FRAM SINE Alu 44 167 -9 29 78 0 0 chr13 43605713 43605777 -58267392 + AT_rich Low_complexity Low_complexity 1 64 0 4159 194 51 10 chr13 43606658 43607556 -58265613 - L1MC2 LINE L1 -15 6827 5893 612 237 111 5 chr13 43607560 43607750 -58265419 - MER34 LTR ERV1 0 542 333 842 251 57 5 chr13 43607785 43607996 -58265173 - MER34 LTR ERV1 -294 248 27 4603 259 49 25 chr13 43608002 43608915 -58264254 - L1MC2 LINE L1 -748 5896 5007 2359 82 3 10 chr13 43608915 43609219 -58263950 - AluSp SINE Alu -11 302 1 4603 259 49 25 chr13 43609219 43610526 -58262643 - L1MC2 LINE L1 -1637 5007 3442 24 32 0 0 chr13 43610932 43610963 -58262206 + AT_rich Low_complexity Low_complexity 1 31 0 282 271 129 18 chr13 43610981 43611151 -58262018 + MER117 DNA MER1_type 1 189 -8 2153 83 30 17 chr13 43611921 43612221 -58260948 - AluSq SINE Alu -9 304 1 351 316 19 39 chr13 43612374 43612529 -58260640 - MER5B DNA MER1_type -1 177 26 330 203 0 0 chr13 43614837 43614896 -58258273 - L2 LINE L2 -1 3312 3254 217 337 22 11 chr13 43615482 43615574 -58257595 + L2 LINE L2 2412 2504 -810 772 195 105 5 chr13 43615672 43615862 -58257307 + MER3 DNA MER1_type 1 209 0 205 347 116 31 chr13 43616005 43616230 -58256939 + L2 LINE L2 2835 3078 -194 24 0 0 0 chr13 43617387 43617411 -58255758 + AT_rich Low_complexity Low_complexity 1 24 0 204 125 0 0 chr13 43619228 43619260 -58253909 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr13 43619396 43619417 -58253752 + AT_rich Low_complexity Low_complexity 1 21 0 2120 122 0 3 chr13 43620344 43620639 -58252530 - AluSx SINE Alu -18 294 1 3263 112 23 19 chr13 43622245 43622726 -58250443 + MER1A DNA MER1_type 47 529 0 889 238 25 45 chr13 43623545 43623831 -58249338 - L1ME2 LINE L1 -138 6026 5747 920 230 29 47 chr13 43623862 43624246 -58248923 + MLT1C LTR MaLR 1 467 0 242 261 33 43 chr13 43624300 43624392 -58248777 - L1ME2 LINE L1 -550 5616 5526 * 247 275 202 5 chr13 43624386 43624579 -58248590 - L1ME2 LINE L1 -1092 5054 4824 2218 258 95 31 chr13 43624635 43625614 -58247555 - L1ME2 LINE L1 -1413 4733 3692 1380 295 39 5 chr13 43625705 43626265 -58246904 - L1MC2 LINE L1 -3238 3406 2828 407 277 101 21 chr13 43626281 43626332 -58246837 - L1MC2 LINE L1 -4171 2654 2608 1858 175 16 16 chr13 43626332 43626697 -58246472 + MLT1A1 LTR MaLR 1 365 0 407 277 101 21 chr13 43626697 43626833 -58246336 - L1MC2 LINE L1 -4217 2608 2452 1055 279 63 53 chr13 43626909 43627891 -58245278 - L1MC2 LINE L1 -4595 2230 1145 341 390 43 9 chr13 43628393 43628716 -58244453 - L1MC2 LINE L1 -5964 861 528 228 135 0 0 chr13 43628925 43628962 -58244207 + (TATG)n Simple_repeat Simple_repeat 3 39 0 399 192 39 85 chr13 43628962 43629092 -58244077 - L1MC4a LINE L1 -528 7280 7157 328 241 65 152 chr13 43630174 43630497 -58242672 - L2 LINE L2 0 3313 3019 473 274 78 0 chr13 43630661 43630814 -58242355 + L1MEc LINE L1 1664 1828 -4568 1324 216 101 0 chr13 43630852 43631240 -58241929 + L1MEc LINE L1 2047 2473 -3923 185 91 0 30 chr13 43632779 43632812 -58240357 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 186 103 0 0 chr13 43633675 43633704 -58239465 + (A)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr13 43633764 43633793 -58239376 + AT_rich Low_complexity Low_complexity 1 29 0 2340 100 0 0 chr13 43635717 43636027 -58237142 + AluSg SINE Alu 1 310 0 200 283 0 0 chr13 43636062 43636099 -58237070 + A-rich Low_complexity Low_complexity 1 40 -20 2274 112 0 10 chr13 43636099 43636412 -58236757 + AluSx SINE Alu 1 310 -2 200 283 0 0 chr13 43636412 43636434 -58236735 + A-rich Low_complexity Low_complexity 39 60 0 423 351 74 5 chr13 43636438 43636640 -58236529 - MIR SINE MIR 0 262 47 298 308 113 26 chr13 43636830 43637025 -58236144 - L2 LINE L2 0 3313 3102 2196 147 36 41 chr13 43637027 43637578 -58235591 + MLT2A2 LTR ERVL 1 554 0 820 292 115 7 chr13 43637580 43637977 -58235192 - L2 LINE L2 -209 3104 2664 1522 295 147 24 chr13 43638904 43639949 -58233220 + L2 LINE L2 2148 3313 0 562 130 0 0 chr13 43640116 43640208 -58232961 - AluSp/q SINE Alu -50 263 172 2047 143 107 6 chr13 43640401 43640764 -58232405 + MSTA LTR MaLR 1 400 -28 1708 153 7 7 chr13 43640764 43641046 -58232123 + AluSx SINE Alu 24 305 -7 293 296 197 30 chr13 43641277 43641510 -58231659 + L3 LINE CR1 183 454 -1123 260 335 50 43 chr13 43642074 43642235 -58230934 - L2 LINE L2 0 3272 3111 484 260 37 5 chr13 43642503 43642690 -58230479 + L1MA10 LINE L1 5981 6334 0 401 265 173 34 chr13 43642988 43643310 -58229859 + L1M4 LINE L1 5178 5565 -613 2574 48 0 3 chr13 43643310 43643620 -58229549 + AluY SINE Alu 1 309 -2 401 265 173 34 chr13 43643620 43643699 -58229470 + L1M4 LINE L1 5565 5632 -546 614 251 15 75 chr13 43643704 43643797 -58229372 - MIR SINE MIR -36 226 150 2338 155 139 5 chr13 43643797 43644242 -58228927 + MLT1D LTR MaLR 1 505 0 614 251 15 75 chr13 43644242 43644347 -58228822 - MIR SINE MIR -112 150 40 2175 101 10 16 chr13 43646338 43646644 -58226525 + AluSc SINE Alu 1 304 -5 22 0 0 0 chr13 43647753 43647775 -58225394 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr13 43648367 43648407 -58224762 + AT_rich Low_complexity Low_complexity 1 40 0 2118 103 0 26 chr13 43648695 43649005 -58224164 + AluSx SINE Alu 1 302 -10 259 298 83 12 chr13 43649438 43649522 -58223647 + MIR3 SINE MIR 83 172 -36 24 0 0 0 chr13 43650134 43650158 -58223011 + AT_rich Low_complexity Low_complexity 1 24 0 2088 116 10 0 chr13 43651926 43652220 -58220949 + AluSx SINE Alu 1 297 -15 1520 238 31 52 chr13 43652673 43653189 -58219980 + MLT1D LTR MaLR 1 505 0 255 333 0 0 chr13 43655408 43655465 -58217704 - MER2 DNA MER2_type -3 342 286 240 289 0 0 chr13 43655465 43655517 -58217652 + MER2 DNA MER2_type 286 337 -8 519 173 25 0 chr13 43655521 43655602 -58217567 - MER2 DNA MER2_type -261 84 2 2232 120 0 0 chr13 43655858 43656167 -58217002 + AluY SINE Alu 1 309 -2 776 239 89 81 chr13 43656242 43656611 -58216558 + L1M3e LINE L1 469 840 -6649 7517 224 59 35 chr13 43656851 43660545 -58212624 + L1M3e LINE L1 1877 5664 -1901 245 333 50 0 chr13 43661189 43661288 -58211881 + MIR SINE MIR 97 200 -62 335 248 66 16 chr13 43661868 43661989 -58211180 - MLT1I LTR MaLR -243 166 40 405 231 11 0 chr13 43663605 43663696 -58209473 - L1 LINE L1 -2295 4553 4462 5782 224 49 22 chr13 43663821 43665402 -58207767 - L1 LINE L1 -3999 2850 1227 1054 158 56 60 chr13 43665526 43665741 -58207428 + MER46A DNA MER2_type 23 236 0 313 283 73 57 chr13 43665757 43666004 -58207165 - L1 LINE L1 -1161 4985 4735 2283 103 0 25 chr13 43666048 43666367 -58206802 - AluSx SINE Alu -1 311 1 309 340 80 5 chr13 43666687 43666887 -58206282 - L2 LINE L2 -1 3312 3098 474 361 62 21 chr13 43667101 43667392 -58205777 - L2 LINE L2 -470 2844 2542 1075 292 44 35 chr13 43667432 43667887 -58205282 + L2 LINE L2 2247 2705 -609 549 314 102 12 chr13 43667898 43668143 -58205026 + L2 LINE L2 3042 3308 -5 268 252 139 17 chr13 43668294 43668409 -58204760 - L2 LINE L2 -926 2388 2260 269 316 44 29 chr13 43670923 43671059 -58202110 - MIR3 SINE MIR -17 191 54 765 207 37 159 chr13 43671311 43671582 -58201587 - MER8 DNA MER2_type 0 239 2 2394 75 0 0 chr13 43673171 43673465 -58199704 + AluY SINE Alu 1 294 -17 1110 111 64 0 chr13 43674490 43674662 -58198507 - MSTA LTR MaLR -245 183 1 250 109 0 0 chr13 43674736 43674782 -58198387 - LTR66 LTR ERVL -171 439 394 206 222 0 0 chr13 43674787 43674832 -58198337 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2476 108 14 3 chr13 43674861 43675221 -58197948 + THE1B LTR MaLR 1 364 0 10747 96 10 57 chr13 43675221 43676880 -58196289 + THE1B-int LTR MaLR 1 1580 0 2203 110 3 3 chr13 43676880 43677189 -58195980 + THE1B LTR MaLR 1 309 -55 24 67 0 0 chr13 43677887 43677932 -58195237 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 43678006 43678027 -58195142 + AT_rich Low_complexity Low_complexity 1 21 0 2261 118 0 0 chr13 43678171 43678477 -58194692 - AluSq SINE Alu -5 308 3 1815 208 45 63 chr13 43678664 43679154 -58194015 + MLT1D LTR MaLR 25 505 0 283 247 59 35 chr13 43679232 43679317 -58193852 + MLT1L LTR MaLR 441 527 -88 361 261 57 80 chr13 43680839 43681103 -58192066 - L1MC4a LINE L1 -158 5963 5706 385 282 70 26 chr13 43681315 43681471 -58191698 - MIR3 SINE MIR -16 192 30 1826 169 0 7 chr13 43682039 43682334 -58190835 + AluJo SINE Alu 1 293 -19 462 308 143 8 chr13 43683305 43683571 -58189598 + L2 LINE L2 3012 3313 0 213 194 0 0 chr13 43685626 43685662 -58187507 + polypurine Low_complexity Low_complexity 2 37 0 915 180 0 18 chr13 43685693 43685860 -58187309 + AluSg/x SINE Alu 140 303 -9 182 189 108 0 chr13 43685990 43686027 -58187142 - L3 LINE CR1 -25 1552 1512 387 315 151 23 chr13 43686096 43686315 -58186854 - MIR SINE MIR 0 262 16 1329 192 26 58 chr13 43686554 43686866 -58186303 - AluJo SINE Alu 0 302 1 624 27 0 0 chr13 43686939 43687013 -58186156 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1626 214 132 9 chr13 43687016 43687441 -58185728 - LTR54B LTR ERV1 -21 477 1 859 254 5 19 chr13 43687618 43687827 -58185342 + MER58A DNA MER1_type 4 209 -15 181 369 82 57 chr13 43688107 43688229 -58184940 + L2 LINE L2 2619 2743 -571 27 0 0 0 chr13 43688234 43688261 -58184908 + AT_rich Low_complexity Low_complexity 1 27 0 2461 107 30 6 chr13 43689182 43689548 -58183621 + THE1C LTR MaLR 1 375 0 3161 187 79 1 chr13 43689830 43690478 -58182691 + L1MB5 LINE L1 5477 6174 0 423 273 74 0 chr13 43690927 43691048 -58182121 - L2 LINE L2 0 3313 3184 257 299 51 17 chr13 43691629 43691746 -58181423 - MIR SINE MIR -10 252 132 782 176 51 11 chr13 43692597 43692773 -58180396 - Charlie4a DNA MER1_type -6 502 320 436 353 18 40 chr13 43692831 43693106 -58180063 + LTR16B LTR ERVL 37 305 -159 1171 207 92 3 chr13 43693170 43693465 -58179704 - Charlie4a DNA MER1_type -184 324 4 21 36 0 0 chr13 43693730 43693758 -58179411 + AT_rich Low_complexity Low_complexity 1 28 0 732 172 8 0 chr13 43694128 43694250 -58178919 - FLAM_C SINE Alu -20 123 1 203 250 13 40 chr13 43694968 43695044 -58178125 - L3b LINE CR1 -355 1228 1155 289 362 9 17 chr13 43696174 43696290 -58176879 + L2 LINE L2 3194 3308 -5 1990 138 0 25 chr13 43697442 43697762 -58175407 - AluSx SINE Alu 0 312 1 1154 50 6 43 chr13 43699775 43699936 -58173233 - L1PA7 LINE L1 -2 6152 5998 26 64 0 0 chr13 43700093 43700140 -58173029 + AT_rich Low_complexity Low_complexity 1 47 0 605 339 66 61 chr13 43702025 43702536 -58170633 + L2 LINE L2 2718 3272 0 244 239 45 30 chr13 43703167 43703234 -58169935 + L2 LINE L2 3163 3230 -42 525 168 50 0 chr13 43705910 43706011 -58167158 - L1MC1 LINE L1 -6 6327 6222 227 307 0 40 chr13 43706056 43706131 -58167038 - MIR SINE MIR -79 183 112 665 209 56 56 chr13 43706710 43706906 -58166263 - MER3 DNA MER1_type -8 201 6 308 326 123 4 chr13 43706939 43707200 -58165969 + L2 LINE L2 1988 2279 -1035 411 322 78 63 chr13 43707895 43708320 -58164849 - L2 LINE L2 -592 2722 2292 348 347 87 73 chr13 43708318 43708618 -58164551 + L2 LINE L2 2964 3267 -5 * 238 380 50 0 chr13 43709864 43709985 -58163184 + L2 LINE L2 3137 3263 -9 190 289 0 77 chr13 43710153 43710205 -58162964 + L2 LINE L2 3214 3261 -11 907 70 70 8 chr13 43710381 43710510 -58162659 - MER85 DNA T2_type -2 137 1 253 200 18 0 chr13 43710583 43710638 -58162531 + MER116 DNA Mariner 25 80 0 626 253 191 48 chr13 43710785 43711141 -58162028 - L2 LINE L2 0 3313 2907 345 318 120 21 chr13 43711766 43711999 -58161170 + L1MC/D LINE L1 5558 5813 -1995 314 297 20 36 chr13 43712041 43712290 -58160879 - HAL1 LINE L1 -10 2497 2253 1881 139 30 7 chr13 43712904 43713205 -58159964 - AluSx SINE Alu -4 308 1 2079 151 0 0 chr13 43713555 43713859 -58159310 + AluSx SINE Alu 1 304 -8 303 234 72 63 chr13 43714983 43715094 -58158075 - L1MC4a LINE L1 -1711 6097 5986 246 286 34 0 chr13 43715140 43715259 -58157910 - L1ME3A LINE L1 -219 5951 5829 225 250 106 15 chr13 43715289 43715421 -58157748 - L1M4 LINE L1 -3889 2257 2114 2650 199 42 124 chr13 43715827 43716974 -58156195 - Charlie1 DNA MER1_type -386 2375 1 18206 29 0 0 chr13 43717809 43720794 -58152375 + L1PA2 LINE L1 3207 6191 0 28 0 0 0 chr13 43722542 43722570 -58150599 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr13 43722627 43722685 -58150484 + AT_rich Low_complexity Low_complexity 1 58 0 24 67 0 0 chr13 43723346 43723391 -58149778 + AT_rich Low_complexity Low_complexity 1 45 0 314 322 40 45 chr13 43723782 43723959 -58149210 - MIR SINE MIR -10 252 77 21 0 0 0 chr13 43725701 43725722 -58147447 + AT_rich Low_complexity Low_complexity 1 21 0 189 74 0 0 chr13 43726106 43726133 -58147036 + (A)n Simple_repeat Simple_repeat 1 27 0 234 0 0 0 chr13 43726972 43726998 -58146171 + (A)n Simple_repeat Simple_repeat 1 26 0 239 312 39 0 chr13 43727917 43727994 -58145175 - L2 LINE L2 -261 3011 2932 211 345 69 40 chr13 43728291 43728465 -58144704 - L2 LINE L2 -823 2491 2313 424 195 12 0 chr13 43728786 43728868 -58144301 - L2 LINE L2 -1 3312 3230 1444 240 128 33 chr13 43728882 43729453 -58143716 - L2 LINE L2 -830 2484 1860 2500 165 47 16 chr13 43730273 43730854 -58142315 - L1MA4A LINE L1 -23 6280 5625 277 347 71 0 chr13 43731649 43731747 -58141422 + L2 LINE L2 3191 3295 -18 28 29 0 0 chr13 43732217 43732252 -58140917 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 43732593 43732614 -58140555 + AT_rich Low_complexity Low_complexity 1 21 0 1017 254 114 17 chr13 43732747 43733168 -58140001 + LTR16B LTR ERVL 1 462 -2 674 133 0 0 chr13 43733597 43733702 -58139467 + L1MB3 LINE L1 6079 6183 0 798 229 57 24 chr13 43734265 43734475 -58138694 + LTR40a LTR ERVL 1 217 -302 517 318 31 49 chr13 43735179 43735465 -58137704 + MER89-int LTR ERV1 6205 6485 -316 * 670 258 29 52 chr13 43735346 43735619 -58137550 + HERVL40 LTR ERVL 2783 5454 -36 997 211 84 35 chr13 43735625 43735909 -58137260 + LTR40b LTR ERVL 164 461 -1 334 149 68 14 chr13 43736630 43736704 -58136465 + LTR67 LTR ERVL 477 554 -3 381 161 0 0 chr13 43736772 43736859 -58136310 + (TA)n Simple_repeat Simple_repeat 1 87 0 2135 84 3 27 chr13 43736859 43737155 -58136014 - AluY SINE Alu -22 289 1 1682 212 49 66 chr13 43738303 43738756 -58134413 + L1MB8 LINE L1 5657 6100 -78 2289 79 0 10 chr13 43738756 43739048 -58134121 - AluY SINE Alu -14 297 9 1682 212 49 66 chr13 43739048 43739126 -58134043 + L1MB8 LINE L1 6100 6178 0 328 274 7 30 chr13 43739871 43740006 -58133163 + GA-rich Low_complexity Low_complexity 1 132 0 2233 101 3 0 chr13 43740330 43740626 -58132543 - AluSx SINE Alu -15 297 1 566 220 23 23 chr13 43740815 43740947 -58132222 + MER5B DNA MER1_type 1 132 -46 2240 74 0 11 chr13 43741388 43741694 -58131475 + AluY SINE Alu 1 303 0 369 229 36 0 chr13 43742044 43742127 -58131042 - MIR SINE MIR -15 247 162 855 266 12 43 chr13 43742133 43742389 -58130780 - MIR SINE MIR -7 255 8 29 28 0 0 chr13 43742452 43742488 -58130681 + AT_rich Low_complexity Low_complexity 1 36 0 300 327 19 32 chr13 43742628 43742784 -58130385 + GA-rich Low_complexity Low_complexity 3 156 0 21 0 0 0 chr13 43743764 43743785 -58129384 + AT_rich Low_complexity Low_complexity 1 21 0 2288 96 3 0 chr13 43744100 43744403 -58128766 + AluSp SINE Alu 1 304 -9 1047 170 162 8 chr13 43744676 43744935 -58128234 - MER33 DNA MER1_type 0 324 26 24 32 0 0 chr13 43747976 43748007 -58125162 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 43748065 43748088 -58125081 + AT_rich Low_complexity Low_complexity 1 23 0 432 0 0 0 chr13 43748361 43748409 -58124760 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1603 181 0 4 chr13 43748412 43748682 -58124487 - AluJo SINE Alu -32 280 12 246 303 42 7 chr13 43748946 43749088 -58124081 + GA-rich Low_complexity Low_complexity 5 151 0 694 224 68 49 chr13 43749725 43749930 -58123239 - MER63A DNA MER1_type 0 210 2 216 0 0 0 chr13 43750142 43750166 -58123003 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 239 288 0 0 chr13 43750416 43750482 -58122687 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2209 94 3 3 chr13 43750518 43750816 -58122353 + AluSq SINE Alu 1 298 -15 195 197 45 45 chr13 43752111 43752177 -58120992 - L3 LINE CR1 -1093 484 419 27 29 0 0 chr13 43752985 43753019 -58120150 + AT_rich Low_complexity Low_complexity 1 34 0 1631 180 14 4 chr13 43753782 43754060 -58119109 - AluJo SINE Alu -31 281 1 314 387 40 8 chr13 43754069 43754193 -58118976 - L2 LINE L2 -20 3252 3125 607 238 95 65 chr13 43754508 43754739 -58118430 + MLT1E2 LTR MaLR 17 254 -372 1733 126 11 15 chr13 43754742 43755011 -58118158 + AluSq SINE Alu 5 272 -41 458 116 14 0 chr13 43755012 43755081 -58118088 + AluJ/FRAM SINE Alu 232 301 -11 626 304 63 21 chr13 43755082 43755286 -58117883 + MLT1E2 LTR MaLR 243 412 -181 * 2024 236 46 9 chr13 43755277 43755823 -58117346 - L1M4 LINE L1 -1605 4541 3976 709 218 111 90 chr13 43755823 43756200 -58116969 - MLT1B LTR MaLR 0 390 6 993 235 50 53 chr13 43756203 43756748 -58116421 - L1M4 LINE L1 -2169 3977 3325 3012 206 100 111 chr13 43756791 43756834 -58116335 - L1MDa LINE L1 -4794 1746 1704 2170 125 0 0 chr13 43756834 43757131 -58116038 - AluSx SINE Alu -15 297 1 3012 206 100 111 chr13 43757131 43757248 -58115921 - L1MDa LINE L1 -4836 1704 1587 2395 77 3 3 chr13 43757248 43757548 -58115621 - AluSx SINE Alu -8 304 5 3012 206 100 111 chr13 43757548 43758967 -58114202 - L1MDa LINE L1 -4953 1587 17 198 312 140 46 chr13 43758973 43759258 -58113911 - L2 LINE L2 -1191 2123 1812 26 0 0 0 chr13 43759737 43759763 -58113406 + AT_rich Low_complexity Low_complexity 1 26 0 1051 64 0 0 chr13 43760458 43760583 -58112586 - AluSc SINE Alu -184 125 1 862 307 91 33 chr13 43760594 43761199 -58111970 - L2 LINE L2 -962 2352 1713 22 35 0 0 chr13 43763195 43763224 -58109945 + AT_rich Low_complexity Low_complexity 1 29 0 1417 298 138 69 chr13 43764934 43765992 -58107177 + L1MC4a LINE L1 5766 6896 -912 819 219 6 11 chr13 43765994 43766177 -58106992 + L1MB5 LINE L1 5986 6167 -7 5912 152 51 31 chr13 43766192 43768238 -58104931 + L1PB3 LINE L1 4061 6151 -3 24 32 0 0 chr13 43768238 43768269 -58104900 + AT_rich Low_complexity Low_complexity 1 31 0 504 269 101 29 chr13 43768380 43768588 -58104581 + L1ME3A LINE L1 5924 6146 -24 28 29 0 0 chr13 43770015 43770050 -58103119 + AT_rich Low_complexity Low_complexity 1 35 0 314 329 58 13 chr13 43770369 43770524 -58102645 - HAL1 LINE L1 -975 1532 1371 252 186 134 41 chr13 43770526 43770623 -58102546 - L1MEd LINE L1 -4862 1257 1152 211 172 17 17 chr13 43770905 43770963 -58102206 + T-rich Low_complexity Low_complexity 2 59 0 696 229 101 11 chr13 43771015 43771203 -58101966 - MER3 DNA MER1_type -4 205 1 192 167 0 45 chr13 43772408 43772474 -58100695 + (TA)n Simple_repeat Simple_repeat 1 63 0 1967 171 3 0 chr13 43772749 43773048 -58100121 + 7SLRNA srpRNA srpRNA 1 300 -20 210 71 0 0 chr13 43773048 43773076 -58100093 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2149 178 64 5 chr13 43773757 43774161 -58099008 + MSTA LTR MaLR 1 428 0 8923 166 25 21 chr13 43774161 43775487 -58097682 + MSTA-int LTR MaLR 1 1336 -315 2136 92 58 7 chr13 43775487 43775781 -58097388 + AluSc SINE Alu 1 309 0 8923 166 25 21 chr13 43775781 43776098 -58097071 + MSTA-int LTR MaLR 1336 1650 -1 2185 155 63 24 chr13 43776099 43776511 -58096658 + MSTA LTR MaLR 1 428 0 810 190 155 0 chr13 43776609 43776783 -58096386 + MER3 DNA MER1_type 8 208 -1 802 308 28 53 chr13 43777517 43777739 -58095430 - L2 LINE L2 -430 2884 2658 1936 152 16 34 chr13 43777739 43778121 -58095048 - THE1C LTR MaLR 0 375 1 802 308 28 53 chr13 43778121 43778405 -58094764 - L2 LINE L2 -656 2658 2391 728 67 0 0 chr13 43778446 43778536 -58094633 - AluSc SINE Alu -19 290 201 303 337 53 0 chr13 43779609 43779704 -58093465 - L2 LINE L2 0 3313 3214 14248 128 32 21 chr13 43779969 43780973 -58092196 - Tigger1 DNA MER2_type 0 2418 1426 2139 105 0 7 chr13 43780973 43781268 -58091901 + AluSq SINE Alu 1 293 -20 14248 128 32 21 chr13 43781268 43782655 -58090514 - Tigger1 DNA MER2_type -992 1426 2 431 252 94 31 chr13 43782748 43782875 -58090294 + L2 LINE L2 3179 3313 0 23 68 0 0 chr13 43783547 43783591 -58089578 + AT_rich Low_complexity Low_complexity 1 44 0 572 193 71 29 chr13 43783735 43783875 -58089294 + MER63 DNA MER1_type 1 772 -290 1853 143 7 26 chr13 43784326 43784633 -58088536 + AluJo SINE Alu 3 303 -9 395 300 71 43 chr13 43785291 43785681 -58087488 - L1MD1 LINE L1 -321 5921 5507 3900 135 33 2 chr13 43785819 43786455 -58086714 - L1PA15 LINE L1 0 6165 5510 453 84 0 0 chr13 43786555 43786626 -58086543 + Alu SINE Alu 235 305 -4 206 358 63 11 chr13 43787119 43787214 -58085955 + L2 LINE L2 3158 3257 -15 1869 127 4 0 chr13 43787215 43787475 -58085694 - AluSq SINE Alu -39 274 14 238 337 84 0 chr13 43787641 43787736 -58085433 - L2 LINE L2 -5 3308 3206 272 185 0 0 chr13 43788499 43788553 -58084616 - MER53 DNA DNA -2 187 134 564 288 56 105 chr13 43790005 43790397 -58082772 - L2 LINE L2 0 3313 2941 250 200 91 0 chr13 43790390 43790445 -58082724 - L2 LINE L2 -505 2809 2750 * 22 56 0 0 chr13 43791041 43791077 -58082092 + AT_rich Low_complexity Low_complexity 1 36 0 2009 103 61 66 chr13 43791083 43791408 -58081761 + THE1C LTR MaLR 1 325 -50 2291 103 6 0 chr13 43791408 43791719 -58081450 + AluSp SINE Alu 1 313 0 2009 103 61 66 chr13 43791719 43791770 -58081399 + THE1C LTR MaLR 325 375 0 260 261 0 0 chr13 43791909 43791978 -58081191 - L1ME LINE L1 -341 5780 5712 295 279 79 24 chr13 43792259 43792424 -58080745 - HAL1 LINE L1 -92 2415 2242 6457 58 1 4 chr13 43792658 43793486 -58079683 + L1PA7 LINE L1 5329 6154 0 757 238 72 21 chr13 43793505 43794205 -58078964 + L1ME LINE L1 4457 5233 -913 1005 248 116 47 chr13 43794238 43794662 -58078507 - LTR40b LTR ERVL -7 455 3 877 224 164 2 chr13 43794664 43795010 -58078159 + L1ME LINE L1 5237 5634 -530 1143 219 124 3 chr13 43795020 43795405 -58077764 + L1ME4a LINE L1 5500 5927 -239 1576 219 0 13 chr13 43796117 43796432 -58076737 + AluJo SINE Alu 1 311 -1 336 291 57 14 chr13 43796435 43796576 -58076593 - L2 LINE L2 -286 3027 2881 292 269 130 19 chr13 43796650 43796758 -58076411 + MER58C DNA MER1_type 12 131 -84 386 169 65 0 chr13 43796802 43796879 -58076290 + MER58C DNA MER1_type 134 215 0 905 331 37 13 chr13 43796880 43797255 -58075914 - L2 LINE L2 -507 2807 2424 1826 301 136 37 chr13 43797265 43797553 -58075616 - L2 LINE L2 -1409 1905 1647 2171 123 13 0 chr13 43797553 43797855 -58075314 + AluSq SINE Alu 1 306 -7 1826 301 136 37 chr13 43797855 43798747 -58074422 - L2 LINE L2 -1667 1647 608 296 324 49 0 chr13 43798768 43798870 -58074299 + L2 LINE L2 3125 3231 -41 2034 88 4 0 chr13 43798943 43799205 -58073964 + AluSx SINE Alu 50 312 0 25 31 0 0 chr13 43799205 43799237 -58073932 + AT_rich Low_complexity Low_complexity 1 32 0 484 214 14 14 chr13 43799860 43800000 -58073169 - L1 LINE L1 -1648 4498 4359 386 251 103 23 chr13 43800269 43800444 -58072725 + MLT1K LTR MaLR 399 587 -1 236 304 168 19 chr13 43801256 43801417 -58071752 + L2 LINE L2 1233 1417 -1897 253 0 54 0 chr13 43801540 43801577 -58071592 + (CTAAT)n Simple_repeat Simple_repeat 3 41 0 205 162 0 0 chr13 43802554 43802591 -58070578 - MIR SINE MIR -69 193 157 311 191 209 17 chr13 43802609 43802724 -58070445 + L1ME4a LINE L1 5969 6105 -16 2076 132 0 0 chr13 43802751 43803047 -58070122 + AluSx SINE Alu 1 296 -16 426 321 122 25 chr13 43804529 43805053 -58068116 - L1MC4a LINE L1 -1976 5832 5258 35 78 0 0 chr13 43808408 43808485 -58064684 + AT_rich Low_complexity Low_complexity 1 77 0 456 250 99 12 chr13 43808641 43808813 -58064356 + MLT1K LTR MaLR 364 550 -38 202 214 0 43 chr13 43811869 43811939 -58061230 + A-rich Low_complexity Low_complexity 3 69 0 311 296 93 12 chr13 43811978 43812150 -58061019 + HAL1b LINE L1 59 244 -1104 359 270 63 13 chr13 43812313 43812472 -58060697 + HAL1b LINE L1 468 634 -714 956 202 195 23 chr13 43812704 43813140 -58060029 + L1MC5 LINE L1 6650 7160 -801 547 247 70 6 chr13 43813159 43813317 -58059852 + L1MC5 LINE L1 7256 7423 -538 808 191 40 35 chr13 43813450 43813623 -58059546 + AluJo SINE Alu 104 277 -35 423 56 0 0 chr13 43813623 43813677 -58059492 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 432 37 0 0 chr13 43813707 43813761 -58059408 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 269 228 167 26 chr13 43813900 43814014 -58059155 + L1ME3A LINE L1 6010 6139 -31 273 243 261 0 chr13 43814055 43814166 -58059003 + MIR3 SINE MIR 48 187 -21 282 238 36 0 chr13 43814779 43814863 -58058306 - Tigger1 DNA MER2_type -1350 1068 982 494 299 28 23 chr13 43815135 43815312 -58057857 - MER5B DNA MER1_type 0 178 1 1910 154 51 12 chr13 43816609 43816940 -58056229 + MER2 DNA MER2_type 1 344 0 203 128 0 51 chr13 43817120 43817159 -58056010 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2040 128 0 0 chr13 43818350 43818632 -58054537 - AluSx SINE Alu -30 282 1 32 67 0 0 chr13 43819144 43819204 -58053965 + AT_rich Low_complexity Low_complexity 1 60 0 1583 143 42 0 chr13 43821060 43821298 -58051871 - AluJb SINE Alu -64 248 1 1456 192 11 4 chr13 43821543 43821814 -58051355 - AluJo SINE Alu -2 310 38 334 315 68 6 chr13 43821826 43821980 -58051189 - MIR SINE MIR -63 145 32 2521 37 3 0 chr13 43822081 43822377 -58050792 + AluY SINE Alu 1 297 -14 310 200 75 12 chr13 43824719 43824799 -58048370 + MER20B DNA MER1_type 37 121 -662 1095 204 146 46 chr13 43824920 43825297 -58047872 - MER66A LTR ERV1 0 478 97 21 0 0 0 chr13 43825327 43825348 -58047821 + AT_rich Low_complexity Low_complexity 1 21 0 796 267 133 29 chr13 43825448 43825901 -58047268 + MER20B DNA MER1_type 269 768 -15 2735 157 39 64 chr13 43826190 43826756 -58046413 + MLT2B3 LTR ERVL 1 552 -2 2544 153 16 12 chr13 43826910 43827340 -58045829 + MSTB1 LTR MaLR 1 432 0 222 268 0 18 chr13 43827485 43827541 -58045628 + GA-rich Low_complexity Low_complexity 2 56 0 413 286 130 7 chr13 43827870 43828024 -58045145 - LTR16A1 LTR ERVL 0 457 285 606 214 16 8 chr13 43828110 43828236 -58044933 - LTR16A1 LTR ERVL -330 127 1 201 161 32 32 chr13 43828281 43828343 -58044826 + (AATAG)n Simple_repeat Simple_repeat 4 65 0 1110 150 60 0 chr13 43828883 43829083 -58044086 - Tigger5 DNA MER2_type 0 2323 2112 1333 216 63 11 chr13 43829083 43829370 -58043799 - Tigger5 DNA MER2_type -2016 307 6 603 0 0 0 chr13 43829620 43829687 -58043482 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 514 130 83 9 chr13 43829688 43829796 -58043373 + L1MD3 LINE L1 6901 7016 -979 273 189 19 0 chr13 43829788 43829841 -58043328 - L1MD3 LINE L1 -726 7269 7216 * 2549 201 51 14 chr13 43829848 43830414 -58042755 + L1MD3 LINE L1 7408 7994 -1 318 268 163 0 chr13 43830821 43830944 -58042225 - MIR SINE MIR -32 230 88 1228 99 21 21 chr13 43831156 43831348 -58041821 - MER30 DNA MER1_type -38 192 1 271 284 65 30 chr13 43831358 43831590 -58041579 + L2 LINE L2 733 972 -2342 254 350 94 26 chr13 43831843 43832109 -58041060 + L2 LINE L2 1525 1808 -1506 193 361 0 0 chr13 43832089 43832161 -58041008 + L2 LINE L2 3237 3308 -5 * 330 190 116 58 chr13 43832999 43833120 -58040049 + L3 LINE CR1 640 767 -810 333 0 0 0 chr13 43834279 43834316 -58038853 + (CA)n Simple_repeat Simple_repeat 1 37 0 2360 69 0 28 chr13 43834530 43834850 -58038319 + AluY SINE Alu 1 311 0 291 282 123 44 chr13 43835913 43836140 -58037029 + L1ME LINE L1 4741 4985 -1161 642 256 61 35 chr13 43836149 43836615 -58036554 + L1ME LINE L1 5030 5508 -658 * 1204 255 86 0 chr13 43836607 43836956 -58036213 + L1MC4 LINE L1 7524 7902 -140 2161 125 10 0 chr13 43838055 43838358 -58034811 + AluSx SINE Alu 1 306 -6 672 154 51 0 chr13 43838977 43839094 -58034075 + MLT1E2 LTR MaLR 504 626 0 21 0 0 0 chr13 43840576 43840597 -58032572 + AT_rich Low_complexity Low_complexity 1 21 0 1677 135 71 28 chr13 43841182 43841464 -58031705 + MER1B DNA MER1_type 46 339 0 25 0 0 0 chr13 43842048 43842073 -58031096 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr13 43843051 43843078 -58030091 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 324 0 0 0 chr13 43843077 43843113 -58030056 + (CA)n Simple_repeat Simple_repeat 1 36 0 403 326 56 22 chr13 43845423 43845601 -58027568 + MIR SINE MIR 32 215 -47 999 233 97 26 chr13 43845619 43845928 -58027241 - MER90 LTR ERV1 -27 548 218 1336 185 161 48 chr13 43845946 43846362 -58026807 - LTR54B LTR ERV1 -35 463 1 1183 213 24 8 chr13 43846368 43846617 -58026552 - MER90 LTR ERV1 -361 253 1 444 318 29 18 chr13 43847089 43847335 -58025834 + L1M4 LINE L1 5433 5692 -492 3981 157 70 85 chr13 43847371 43848285 -58024884 + MER21A LTR ERV1 13 914 -17 2278 57 17 20 chr13 43848285 43848585 -58024584 - AluSc SINE Alu -10 299 1 3981 157 70 85 chr13 43848585 43848603 -58024566 + MER21A LTR ERV1 914 931 0 204 211 35 18 chr13 43848792 43848849 -58024320 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1092 153 16 5 chr13 43849862 43850051 -58023118 - MER20B DNA MER1_type -1 218 28 1462 175 94 29 chr13 43850052 43850222 -58022947 - L1M4 LINE L1 -377 5807 5649 1663 160 100 62 chr13 43850222 43850519 -58022650 - MER31B LTR ERV1 0 466 145 2252 119 0 6 chr13 43850519 43850830 -58022339 + AluSx SINE Alu 1 309 -3 1663 160 100 62 chr13 43850830 43850981 -58022188 - MER31B LTR ERV1 -321 145 1 1462 175 94 29 chr13 43850981 43851152 -58022017 - L1M4 LINE L1 -535 5649 5444 875 229 0 6 chr13 43851161 43851340 -58021829 + MER58A DNA MER1_type 47 224 0 29 0 0 0 chr13 43851646 43851675 -58021494 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr13 43855329 43855368 -58017801 + AT_rich Low_complexity Low_complexity 1 39 0 899 200 100 5 chr13 43855709 43855899 -58017270 - AluJb SINE Alu -19 293 86 225 300 283 17 chr13 43857181 43857418 -58015751 - L2 LINE L2 -1 3271 2972 26 0 0 0 chr13 43857612 43857638 -58015531 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 43857900 43857925 -58015244 + AT_rich Low_complexity Low_complexity 1 25 0 1205 170 10 0 chr13 43858492 43858686 -58014483 - MER7A DNA MER2_type 0 336 141 735 188 8 0 chr13 43858767 43858895 -58014274 - MLT1A1 LTR MaLR -162 203 75 825 161 35 0 chr13 43859125 43859268 -58013901 - MER7A DNA MER2_type -198 148 3 378 206 129 52 chr13 43860841 43860996 -58012173 + MER106B DNA MER1_type 40 1029 -30 1929 106 3 38 chr13 43860999 43861320 -58011849 - AluSx SINE Alu 0 311 1 480 273 83 9 chr13 43861486 43861702 -58011467 + L1ME4a LINE L1 5551 5782 -339 329 255 39 10 chr13 43861719 43861821 -58011348 + L1ME4a LINE L1 5840 5944 -177 182 256 147 31 chr13 43862586 43862715 -58010454 - L2 LINE L2 -64 3249 3106 723 295 100 47 chr13 43862874 43863367 -58009802 - L2 LINE L2 0 3313 2766 1671 147 39 39 chr13 43863982 43864294 -58008875 - AluJo SINE Alu 0 312 1 489 299 51 6 chr13 43864523 43864700 -58008469 + MIR SINE MIR 2 186 -76 500 279 34 45 chr13 43865390 43865569 -58007600 + MER5B DNA MER1_type 1 177 -1 219 253 222 20 chr13 43866304 43866403 -58006766 - MIR SINE MIR -85 177 59 2303 59 17 10 chr13 43866609 43866897 -58006272 + AluY SINE Alu 3 292 -19 491 350 105 43 chr13 43869021 43869553 -58003616 - L2 LINE L2 -535 2779 2215 984 181 16 0 chr13 43869553 43869746 -58003423 - MER3 DNA MER1_type 0 209 14 253 127 0 19 chr13 43869978 43870037 -58003132 + Alu SINE Alu 254 290 -12 1761 174 6 22 chr13 43870705 43871022 -58002147 + AluJb SINE Alu 1 312 0 494 133 33 11 chr13 43871023 43871113 -58002056 + MER41B LTR ERV1 458 549 -86 1859 164 0 10 chr13 43871262 43871561 -58001608 - AluJb SINE Alu -16 296 1 374 299 153 0 chr13 43871718 43871855 -58001314 + MIR SINE MIR 104 261 -1 506 193 57 43 chr13 43872461 43872601 -58000568 - MIR SINE MIR -40 222 81 23 0 0 0 chr13 43873433 43873456 -57999713 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 43873463 43873515 -57999654 + AT_rich Low_complexity Low_complexity 1 52 0 189 186 51 51 chr13 43874876 43874935 -57998234 - MIR SINE MIR -111 151 93 513 194 48 16 chr13 43875260 43875384 -57997785 - MIR SINE MIR -117 145 18 896 199 101 11 chr13 43876988 43877319 -57995850 - MLT1D LTR MaLR -8 497 83 1086 171 76 19 chr13 43877328 43877693 -57995476 - LTR48 LTR ERV1 -74 713 135 298 244 174 17 chr13 43877662 43877777 -57995392 - MER39 LTR ERV1 -574 133 1 * 286 273 111 62 chr13 43877796 43877926 -57995243 - MLT1L LTR MaLR -28 587 465 198 0 0 0 chr13 43877926 43877948 -57995221 + (TA)n Simple_repeat Simple_repeat 2 23 0 2211 109 0 10 chr13 43877948 43878252 -57994917 - AluSx SINE Alu -11 301 1 286 273 111 62 chr13 43878252 43878409 -57994760 - MLT1L LTR MaLR -149 466 285 2357 241 45 34 chr13 43878410 43879212 -57993957 - L1ME LINE L1 -5182 888 78 271 250 52 21 chr13 43879277 43879373 -57993796 - MLT1L LTR MaLR -326 289 191 234 0 0 0 chr13 43879914 43879940 -57993229 + (A)n Simple_repeat Simple_repeat 1 26 0 463 208 21 21 chr13 43879949 43880045 -57993124 - MLT1D LTR MaLR -409 96 1 2219 126 7 0 chr13 43880351 43880661 -57992508 + AluSx SINE Alu 1 312 0 869 274 20 0 chr13 43880666 43880863 -57992306 + MIR SINE MIR 30 230 -32 2501 62 3 0 chr13 43880951 43881258 -57991911 + AluY SINE Alu 1 308 -3 318 294 172 37 chr13 43882546 43882709 -57990460 + L1MEd LINE L1 562 746 -5373 331 266 71 24 chr13 43882712 43882964 -57990205 + L1MEd LINE L1 770 1033 -5086 26 0 0 0 chr13 43883457 43883483 -57989686 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 43883745 43883770 -57989399 + AT_rich Low_complexity Low_complexity 1 25 0 483 370 74 37 chr13 43883845 43884169 -57989000 - L2 LINE L2 0 3272 2937 328 337 163 5 chr13 43884629 43884831 -57988338 + L2 LINE L2 171 404 -2910 330 357 0 26 chr13 43884851 43885005 -57988164 + L2 LINE L2 530 679 -2635 880 213 138 79 chr13 43885017 43885445 -57987724 + Charlie4a DNA MER1_type 1 453 -55 * 1059 227 151 10 chr13 43885443 43885734 -57987435 - MLT1F LTR MaLR -5 537 206 259 307 0 0 chr13 43886473 43886548 -57986621 - L2 LINE L2 0 3313 3239 1660 224 59 55 chr13 43886559 43886624 -57986545 - MLT1F LTR MaLR -7 535 472 2668 32 3 3 chr13 43886624 43886934 -57986235 - AluYa5 SINE Alu -1 310 1 1660 224 59 55 chr13 43886934 43887332 -57985837 - MLT1F LTR MaLR -70 472 80 355 297 23 59 chr13 43887335 43887554 -57985615 - L2 LINE L2 -64 3249 3039 239 300 80 40 chr13 43887628 43887728 -57985441 - MIR SINE MIR -145 117 14 21 36 0 0 chr13 43888171 43888199 -57984970 + AT_rich Low_complexity Low_complexity 1 28 0 207 255 0 0 chr13 43888954 43889005 -57984164 + CT-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr13 43889242 43889263 -57983906 + AT_rich Low_complexity Low_complexity 1 21 0 266 300 0 0 chr13 43889477 43889537 -57983632 + L2 LINE L2 3200 3259 -13 644 204 23 122 chr13 43890261 43890482 -57982687 - L1MEc LINE L1 -4612 1784 1586 2423 175 39 25 chr13 43890483 43890992 -57982177 + Tigger2 DNA MER2_type 1 516 -2202 342 303 0 0 chr13 43891093 43891189 -57981980 - MIR SINE MIR -64 144 54 1543 181 38 44 chr13 43891345 43891616 -57981553 - L1MB8 LINE L1 -89 6089 5819 1849 166 0 22 chr13 43891616 43891929 -57981240 - AluJo SINE Alu -1 311 6 1543 181 38 44 chr13 43891929 43892022 -57981147 - L1MB8 LINE L1 -359 5819 5727 317 318 95 24 chr13 43892322 43892448 -57980721 + L2 LINE L2 3137 3271 -1 254 242 111 88 chr13 43892903 43893066 -57980103 + MIR SINE MIR 17 181 -81 397 239 18 127 chr13 43894084 43894368 -57978801 + MER112 DNA MER1_type 1 253 -3 310 253 27 0 chr13 43894456 43894531 -57978638 + MIR SINE MIR 48 124 -138 3580 106 15 11 chr13 43894634 43895174 -57977995 + L1PA13 LINE L1 5620 6161 -2 937 208 101 40 chr13 43895175 43895651 -57977518 - L1ME1 LINE L1 -9 6157 5566 1594 225 156 57 chr13 43895705 43896568 -57976601 - L1ME1 LINE L1 -2663 3483 2535 32 67 0 0 chr13 43896852 43896912 -57976257 + AT_rich Low_complexity Low_complexity 1 60 0 528 254 275 39 chr13 43896917 43897303 -57975866 - MLT1F LTR MaLR -65 477 1 264 220 120 50 chr13 43897392 43897492 -57975677 - HAL1b LINE L1 -474 874 768 556 115 35 0 chr13 43897950 43898037 -57975132 - HY4 scRNA scRNA -3 90 1 1402 256 74 56 chr13 43898164 43898731 -57974438 - MLT1E2 LTR MaLR -47 579 3 180 0 0 0 chr13 43900540 43900560 -57972609 + (A)n Simple_repeat Simple_repeat 1 20 0 2571 27 0 17 chr13 43900722 43901021 -57972148 + AluY SINE Alu 2 295 -16 1898 121 71 0 chr13 43901810 43902091 -57971078 - AluSx SINE Alu -11 301 1 391 295 35 35 chr13 43902222 43902395 -57970774 - MER5A DNA MER1_type -15 174 2 273 119 0 0 chr13 43902822 43902864 -57970305 + (GGAGAA)n Simple_repeat Simple_repeat 4 45 0 1852 112 112 7 chr13 43904591 43904869 -57968300 + AluSg1 SINE Alu 1 307 -2 220 231 11 77 chr13 43905277 43905368 -57967801 + GA-rich Low_complexity Low_complexity 2 86 0 576 282 42 7 chr13 43905391 43905533 -57967636 + MER45A DNA AcHobo 1 147 -31 307 274 11 0 chr13 43905604 43905699 -57967470 + MLT1K LTR MaLR 493 588 0 46 0 0 0 chr13 43905939 43905985 -57967184 + AT_rich Low_complexity Low_complexity 1 46 0 225 152 13 25 chr13 43905996 43906075 -57967094 + (TA)n Simple_repeat Simple_repeat 2 79 0 201 241 0 0 chr13 43906154 43906208 -57966961 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 1592 194 3 10 chr13 43906208 43906496 -57966673 - AluJo SINE Alu -26 286 1 1932 117 0 0 chr13 43906563 43906828 -57966341 + AluSg SINE Alu 42 306 -4 1652 189 3 3 chr13 43907418 43907709 -57965460 + MLT1A1 LTR MaLR 75 365 0 2909 9 0 0 chr13 43908455 43908773 -57964396 - AluYb8 SINE Alu 0 318 1 1392 139 26 134 chr13 43909024 43909413 -57963756 + MER7A DNA MER2_type 2 346 0 518 336 14 5 chr13 43910097 43910305 -57962864 + LTR33 LTR ERVL 1 210 -311 805 231 39 0 chr13 43910317 43910520 -57962649 + MER106A DNA MER1_type 6 216 -20 21 36 0 0 chr13 43911007 43911035 -57962134 + AT_rich Low_complexity Low_complexity 1 28 0 1831 155 0 36 chr13 43911113 43911417 -57961752 + AluJo SINE Alu 6 298 -14 2120 115 3 14 chr13 43911446 43911742 -57961427 - AluSx SINE Alu -19 293 1 351 65 0 0 chr13 43913559 43913605 -57959564 + (CA)n Simple_repeat Simple_repeat 2 47 0 1005 148 65 17 chr13 43913642 43913752 -57959417 + L1MA9 LINE L1 6050 6153 -159 327 25 0 0 chr13 43913752 43913792 -57959377 + (CA)n Simple_repeat Simple_repeat 1 40 0 1005 148 65 17 chr13 43913792 43913911 -57959258 + L1MA9 LINE L1 6153 6290 -22 947 158 7 13 chr13 43914930 43915082 -57958087 + FRAM SINE Alu 1 150 -26 389 333 46 47 chr13 43915092 43915340 -57957829 + L1ME4a LINE L1 5313 5559 -562 816 166 0 0 chr13 43915396 43915553 -57957616 - L1 LINE L1 -3137 3009 2853 225 237 102 0 chr13 43915553 43915612 -57957557 - Tigger1 DNA MER2_type 0 2418 2354 10271 108 13 15 chr13 43915626 43916355 -57956814 - Tigger1 DNA MER2_type -307 2111 1382 2285 101 0 3 chr13 43916355 43916661 -57956508 + AluSc SINE Alu 1 305 -4 10271 108 13 15 chr13 43916661 43917568 -57955601 - Tigger1 DNA MER2_type -1036 1382 479 189 0 0 0 chr13 43917572 43917593 -57955576 + (T)n Simple_repeat Simple_repeat 1 21 0 791 214 14 0 chr13 43917611 43917756 -57955413 - AluJo SINE Alu -83 229 83 2733 141 16 40 chr13 43917756 43918261 -57954908 - Tigger1 DNA MER2_type -1925 493 1 232 177 48 0 chr13 43918262 43918324 -57954845 - L1 LINE L1 -3293 2853 2789 458 133 44 0 chr13 43918329 43918419 -57954750 + L1MA5 LINE L1 6202 6295 -5 329 344 5 5 chr13 43918499 43918688 -57954481 + L1ME4a LINE L1 5631 5819 -343 2364 106 3 0 chr13 43918868 43919171 -57953998 - AluSx SINE Alu -8 304 1 2523 186 10 29 chr13 43919562 43920077 -57953092 - MLT1D LTR MaLR 0 505 1 336 304 49 52 chr13 43920598 43920725 -57952444 + L1ME4a LINE L1 5835 5961 -160 770 206 0 0 chr13 43920725 43920856 -57952313 - FLAM_A SINE Alu -2 131 1 336 304 49 52 chr13 43920856 43921014 -57952155 + L1ME4a LINE L1 5961 6119 -2 381 260 94 0 chr13 43921125 43921221 -57951948 + MIR SINE MIR 49 153 -109 182 262 82 0 chr13 43921250 43921311 -57951858 - MIR SINE MIR -54 208 143 2212 118 3 9 chr13 43921856 43922171 -57950998 + AluSp SINE Alu 1 313 0 978 189 49 70 chr13 43922277 43922562 -57950607 - MER46C DNA MER2_type -10 328 50 1756 169 25 0 chr13 43923166 43923444 -57949725 + AluJb SINE Alu 1 285 -27 1130 154 4 30 chr13 43923704 43923938 -57949231 + SVA Other Other 450 677 -709 335 282 153 15 chr13 43924050 43924181 -57948988 - MIR SINE MIR -78 184 36 22 0 0 0 chr13 43925190 43925212 -57947957 + AT_rich Low_complexity Low_complexity 1 22 0 2011 127 0 39 chr13 43925330 43925637 -57947532 - AluSx SINE Alu -17 295 1 330 289 27 13 chr13 43925762 43925945 -57947224 + L1P5 LINE L1 5271 5457 -699 6517 186 52 43 chr13 43925971 43926223 -57946946 + L1MB7 LINE L1 3539 3787 -2397 1869 174 4 0 chr13 43926223 43926548 -57946621 + AluJo SINE Alu 1 326 0 6517 186 52 43 chr13 43926548 43926623 -57946546 + L1MB7 LINE L1 3787 3860 -2324 1928 137 0 78 chr13 43926623 43926945 -57946224 + AluSx SINE Alu 1 297 -15 213 108 0 0 chr13 43926945 43926982 -57946187 + (CA)n Simple_repeat Simple_repeat 2 38 0 6517 186 52 43 chr13 43926982 43929115 -57944054 + L1MB7 LINE L1 3859 6029 -155 34 72 0 0 chr13 43929473 43929542 -57943627 + AT_rich Low_complexity Low_complexity 1 69 0 24 32 0 0 chr13 43929694 43929725 -57943444 + AT_rich Low_complexity Low_complexity 1 31 0 2086 109 3 3 chr13 43930163 43930448 -57942721 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr13 43930448 43930486 -57942683 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 780 271 36 15 chr13 43930497 43930829 -57942340 - L1ME3 LINE L1 -14 6148 5810 201 167 0 0 chr13 43931497 43931533 -57941636 + (TAA)n Simple_repeat Simple_repeat 2 37 0 301 283 71 0 chr13 43931885 43931984 -57941185 + MIR3 SINE MIR 66 171 -37 45 19 0 0 chr13 43931987 43932039 -57941130 + AT_rich Low_complexity Low_complexity 1 52 0 184 353 0 0 chr13 43933226 43933277 -57939892 + L2 LINE L2 3251 3301 -12 257 302 73 10 chr13 43933864 43933960 -57939209 + L2 LINE L2 3191 3292 -21 344 346 103 22 chr13 43933971 43934107 -57939062 - L2 LINE L2 -9 3263 3117 1450 172 6 83 chr13 43934126 43934440 -57938729 - AluJo SINE Alu -22 290 1 2361 204 94 25 chr13 43935315 43935993 -57937176 - MER50 LTR ERV1 0 734 10 336 24 0 0 chr13 43936456 43936497 -57936672 + (TG)n Simple_repeat Simple_repeat 2 42 0 242 274 0 0 chr13 43936618 43936669 -57936500 + polypurine Low_complexity Low_complexity 3 53 0 228 86 0 0 chr13 43936797 43936832 -57936337 + (CAA)n Simple_repeat Simple_repeat 2 36 0 537 282 30 64 chr13 43937114 43937236 -57935933 + MIR SINE MIR 1 117 -145 2039 112 7 7 chr13 43937236 43937599 -57935570 - AluSp SINE Alu 0 363 1 537 282 30 64 chr13 43937599 43937676 -57935493 + MIR SINE MIR 117 195 -67 183 217 0 87 chr13 43937848 43937917 -57935252 + L3 LINE CR1 826 888 -689 2314 181 131 7 chr13 43939446 43940009 -57933160 + LTR28 LTR ERV1 1 1274 -421 1522 199 87 5 chr13 43940725 43940797 -57932372 - MER63B DNA MER1_type -626 436 371 388 46 231 0 chr13 43940797 43940862 -57932307 - MADE1 DNA Mariner 0 80 1 1522 199 87 5 chr13 43940862 43941192 -57931977 - MER63B DNA MER1_type -691 371 1 297 89 0 0 chr13 43941995 43942040 -57931129 + (TG)n Simple_repeat Simple_repeat 2 46 0 508 163 22 15 chr13 43942052 43942187 -57930982 + MER96B DNA MER1_type? 46 181 -236 338 320 202 37 chr13 43942248 43942579 -57930590 + L2 LINE L2 1565 1840 -1474 1921 140 4 4 chr13 43942579 43942858 -57930311 - AluSx SINE Alu -33 279 1 338 320 202 37 chr13 43942858 43943198 -57929971 + L2 LINE L2 1840 2347 -967 595 283 172 32 chr13 43943482 43943888 -57929281 + L2 LINE L2 2851 3313 0 192 323 0 0 chr13 43943949 43944011 -57929158 - L2 LINE L2 -2 3270 3209 * 247 384 32 11 chr13 43944005 43944190 -57928979 + L2 LINE L2 2566 2754 -560 253 342 33 86 chr13 43944277 43944429 -57928740 + L2 LINE L2 3127 3270 -2 195 263 62 38 chr13 43944679 43944759 -57928410 - L2 LINE L2 -55 3258 3177 227 279 23 93 chr13 43945322 43945451 -57927718 - MIR SINE MIR -36 226 107 2463 204 64 97 chr13 43945471 43946570 -57926599 - L1MC4a LINE L1 -821 6987 5925 1978 160 16 0 chr13 43946587 43946894 -57926275 - AluJb SINE Alu 0 312 1 2413 72 7 10 chr13 43947178 43947482 -57925687 + AluSp SINE Alu 1 303 -10 471 277 57 7 chr13 43948344 43948485 -57924684 + L2 LINE L2 3119 3266 -6 1904 46 13 0 chr13 43950183 43950422 -57922747 + L1PA5 LINE L1 5909 6150 -4 1600 161 63 32 chr13 43950536 43950836 -57922333 - MER46B DNA MER2_type -2497 234 45 2235 122 0 0 chr13 43950836 43951139 -57922030 - AluSq SINE Alu -10 303 1 1600 161 63 32 chr13 43951139 43951186 -57921983 - MER46B DNA MER2_type -2686 45 1 270 309 37 12 chr13 43951337 43951418 -57921751 + MIR SINE MIR 17 99 -109 371 316 70 29 chr13 43951751 43951922 -57921247 + MER5B DNA MER1_type 1 178 0 374 352 28 0 chr13 43951926 43952068 -57921101 - L2 LINE L2 -550 2764 2619 642 281 41 44 chr13 43952074 43952320 -57920849 + L1ME3A LINE L1 5611 5856 -314 2306 180 46 37 chr13 43952320 43952864 -57920305 - MER44D DNA MER2_type 0 605 2 642 281 41 44 chr13 43952864 43952910 -57920259 + L1ME3A LINE L1 5856 5901 -269 1617 160 50 114 chr13 43952910 43953385 -57919784 + MER65A LTR ERV1 1 445 0 642 281 41 44 chr13 43953385 43953433 -57919736 + L1ME3A LINE L1 5901 5951 -219 906 244 70 79 chr13 43953639 43954176 -57918993 + MLT1F LTR MaLR 3 538 -11 714 204 6 32 chr13 43954261 43954418 -57918751 + MIR SINE MIR 35 187 -75 321 241 23 0 chr13 43955303 43955390 -57917779 + L3b LINE CR1 1277 1365 -218 182 196 36 71 chr13 43955372 43955428 -57917741 + MIR3 SINE MIR 144 197 -11 * 2319 112 3 0 chr13 43955937 43956249 -57916920 + AluSq SINE Alu 1 313 0 1475 227 152 22 chr13 43956289 43956875 -57916294 - L1MC4 LINE L1 -142 7900 7239 1633 178 63 0 chr13 43956877 43957209 -57915960 - L1MC4 LINE L1 -970 7072 6720 487 242 28 39 chr13 43957650 43957828 -57915341 + MER5B DNA MER1_type 2 177 -1 575 294 21 11 chr13 43958257 43958444 -57914725 + MIR SINE MIR 72 260 -2 873 256 121 48 chr13 43959706 43960206 -57912963 - MLT1H LTR MaLR -15 580 40 521 209 43 9 chr13 43962428 43962543 -57910626 + MLT1J2 LTR MaLR 63 181 -269 413 273 108 0 chr13 43962597 43962736 -57910433 + MLT1J2 LTR MaLR 295 448 -2 348 242 119 68 chr13 43962740 43962959 -57910210 - HAL1 LINE L1 -768 1739 1510 * 835 248 103 31 chr13 43962958 43963406 -57909763 - HAL1 LINE L1 -1230 1277 798 1515 276 88 35 chr13 43963473 43964340 -57908829 - Charlie7 DNA MER1_type -1595 1017 105 42338 36 1 1 chr13 43964344 43970500 -57902669 - L1PA3 LINE L1 -1 6154 1 340 291 59 32 chr13 43970614 43970741 -57902428 + MER5A DNA MER1_type 1 116 -62 303 267 19 93 chr13 43970993 43971154 -57902015 + L2 LINE L2 2908 3056 -216 258 286 0 29 chr13 43971318 43971388 -57901781 + L2 LINE L2 3205 3272 0 2316 126 0 0 chr13 43971396 43971706 -57901463 + AluSx SINE Alu 1 310 -2 6571 75 14 0 chr13 43971912 43971924 -57901245 + L1PA6 LINE L1 4923 4933 -1221 2193 105 0 10 chr13 43971924 43972220 -57900949 + AluSc SINE Alu 1 293 -16 6571 75 14 0 chr13 43972220 43973412 -57899757 + L1PA6 LINE L1 4933 6136 -18 918 185 51 9 chr13 43973461 43973726 -57899443 - L1MD1 LINE L1 -291 6345 6138 30 97 0 0 chr13 43973890 43973983 -57899186 + GC_rich Low_complexity Low_complexity 1 93 0 264 198 20 30 chr13 43973983 43974084 -57899085 + G-rich Low_complexity Low_complexity 3 102 0 540 45 0 0 chr13 43974106 43974173 -57898996 + (TTTC)n Simple_repeat Simple_repeat 1 67 0 5037 227 55 24 chr13 43974176 43974907 -57898262 - L1MD1 LINE L1 -743 5797 5090 2137 140 119 13 chr13 43974907 43975293 -57897876 - MSTA LTR MaLR -1 427 1 5037 227 55 24 chr13 43975293 43976666 -57896503 - L1MD1 LINE L1 -1450 5090 3797 1797 139 48 31 chr13 43976679 43977031 -57896138 + MER46B DNA MER2_type 2 234 -2 343 267 19 9 chr13 43977032 43977137 -57896032 - L1MD1 LINE L1 -2795 3745 3640 1844 110 0 0 chr13 43977143 43977415 -57895754 + L1P3 LINE L1 404 675 -5786 1059 234 19 0 chr13 43977413 43977734 -57895435 - L1MD1 LINE L1 -2906 3634 3308 * 2961 209 102 171 chr13 43977740 43978177 -57894992 - L1MD1 LINE L1 -4711 1829 1363 2248 90 10 13 chr13 43978177 43978488 -57894681 - AluSg SINE Alu 0 310 1 2961 209 102 171 chr13 43978488 43978813 -57894356 - L1MD1 LINE L1 -5177 1363 1017 1093 196 18 32 chr13 43978813 43979032 -57894137 - AluJo SINE Alu -8 304 89 2961 209 102 171 chr13 43979032 43979995 -57893174 - L1MD1 LINE L1 -5523 1017 19 208 239 186 26 chr13 43979996 43980109 -57893060 - MIR SINE MIR -56 152 22 2500 186 40 61 chr13 43980246 43980871 -57892298 - LTR9 LTR ERV1 0 612 1 3444 172 35 1 chr13 43981147 43981799 -57891370 - L1MB1 LINE L1 -1 6167 5494 3272 180 14 17 chr13 43981811 43982267 -57890902 + L1M3 LINE L1 4646 5098 -1070 1599 153 28 104 chr13 43982267 43982620 -57890549 + MLT1A1 LTR MaLR 3 325 -40 2332 104 0 7 chr13 43982620 43982928 -57890241 - AluSc SINE Alu -3 306 1 1599 153 28 104 chr13 43982928 43982967 -57890202 + MLT1A1 LTR MaLR 325 365 0 3272 180 14 17 chr13 43982967 43983320 -57889849 + L1M3 LINE L1 5098 5450 -718 183 324 9 83 chr13 43984059 43984167 -57889002 - L3 LINE CR1 -39 1538 1439 433 284 58 32 chr13 43984557 43984747 -57888422 - L2 LINE L2 -1 3312 3118 805 222 6 6 chr13 43984793 43984960 -57888209 - FAM SINE Alu -10 175 9 432 117 13 26 chr13 43984960 43985037 -57888132 - LTR30 LTR ERV1 -2 720 645 13183 70 1 6 chr13 43985039 43986778 -57886391 - HERV30 LTR ERV1 -6526 1731 1 4880 97 18 7 chr13 43986778 43987492 -57885677 - LTR30 LTR ERV1 0 722 1 850 254 106 113 chr13 43987515 43988525 -57884644 - L2 LINE L2 -353 2961 1959 252 291 111 35 chr13 43989909 43990027 -57883142 + L3 LINE CR1 1146 1286 -291 1874 133 84 0 chr13 43990027 43990312 -57882857 + AluSx SINE Alu 1 309 -3 252 291 111 35 chr13 43990312 43990392 -57882777 + L3 LINE CR1 1286 1359 -218 287 304 130 29 chr13 43990392 43990530 -57882639 - L2 LINE L2 -6 3266 3115 454 343 147 8 chr13 43990654 43991021 -57882148 + L2 LINE L2 2560 2977 -337 344 373 29 53 chr13 43991208 43991284 -57881885 + L2 LINE L2 3069 3145 -127 1847 146 48 0 chr13 43991284 43991578 -57881591 - AluSx SINE Alu -4 308 1 344 373 29 53 chr13 43991578 43991710 -57881459 + L2 LINE L2 3145 3272 0 1538 223 105 24 chr13 43991938 43992311 -57880858 + MLT2B1 LTR ERVL 1 403 -117 276 163 0 0 chr13 43992315 43992364 -57880805 - MIR SINE MIR -75 133 85 999 34 0 0 chr13 43994922 43995039 -57878130 + L1PA5 LINE L1 6023 6139 -15 2259 119 0 0 chr13 43995086 43995396 -57877773 + AluSg SINE Alu 1 310 0 22 0 0 0 chr13 43996580 43996602 -57876567 + AT_rich Low_complexity Low_complexity 1 22 0 2031 153 0 7 chr13 43998745 43999052 -57874117 + AluSx SINE Alu 3 307 -5 2021 135 10 3 chr13 43999272 43999568 -57873601 + AluJb SINE Alu 1 298 -14 423 200 17 9 chr13 43999581 43999696 -57873473 + GA-rich Low_complexity Low_complexity 2 117 0 494 281 5 40 chr13 44000120 44000319 -57872850 + LTR16C LTR ERVL 300 491 0 24 0 0 0 chr13 44001263 44001287 -57871882 + AT_rich Low_complexity Low_complexity 1 24 0 241 70 47 23 chr13 44001664 44001707 -57871462 - MLT2C2 LTR ERVL 0 464 421 608 225 0 11 chr13 44001708 44001890 -57871279 + CT-rich Low_complexity Low_complexity 1 180 0 1643 205 35 0 chr13 44001909 44002327 -57870842 - MLT2B1 LTR ERVL -39 481 1 276 30 0 0 chr13 44002384 44002417 -57870752 + (GAGAA)n Simple_repeat Simple_repeat 4 36 0 402 209 167 42 chr13 44002546 44002712 -57870457 - LTR50 LTR ERVL -351 190 18 850 208 51 15 chr13 44003515 44003712 -57869457 - MER20 DNA MER1_type 0 219 16 2107 89 7 0 chr13 44003768 44004078 -57869091 + AluY SINE Alu 1 312 0 272 133 0 0 chr13 44005182 44005227 -57867942 - MER116 DNA Mariner -1 79 35 847 164 22 0 chr13 44005234 44005368 -57867801 + AluJo SINE Alu 1 137 -175 258 294 22 22 chr13 44005370 44005550 -57867619 + (TA)n Simple_repeat Simple_repeat 1 180 0 1613 262 91 63 chr13 44005562 44006233 -57866936 - L2 LINE L2 -157 3156 2443 736 181 0 8 chr13 44006233 44006360 -57866809 + FLAM_A SINE Alu 1 126 -7 1613 262 91 63 chr13 44006360 44006497 -57866672 - L2 LINE L2 -870 2443 2311 10898 28 0 0 chr13 44007152 44009210 -57863959 - L1PA3 LINE L1 -2 6153 4094 1435 144 28 1 chr13 44009398 44009716 -57863453 - MER47A DNA MER2_type -3 363 2 442 260 106 0 chr13 44012151 44012274 -57860895 + MIR SINE MIR 13 148 -114 403 221 53 11 chr13 44012790 44012885 -57860284 + LTR16C LTR ERVL 393 491 0 414 0 0 0 chr13 44014210 44014256 -57858913 + (TG)n Simple_repeat Simple_repeat 2 47 0 197 277 119 65 chr13 44015098 44015271 -57857898 + MIR3 SINE MIR 6 177 -66 22 0 0 0 chr13 44015823 44015845 -57857324 + AT_rich Low_complexity Low_complexity 1 22 0 300 19 37 37 chr13 44015997 44016051 -57857118 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3095 120 48 26 chr13 44016052 44016568 -57856601 - LTR9B LTR ERV1 -85 559 29 2505 47 3 0 chr13 44016568 44016864 -57856305 - AluY SINE Alu -14 297 1 3095 120 48 26 chr13 44016864 44016890 -57856279 - LTR9B LTR ERV1 -615 29 5 655 205 0 8 chr13 44016892 44017014 -57856155 - HUERS-P3b LTR ERV1 -4 7414 7294 302 241 231 93 chr13 44017462 44017570 -57855599 - MER5A DNA MER1_type 0 189 56 327 280 11 0 chr13 44018028 44018121 -57855048 - L1MD3 LINE L1 -66 7929 7836 2008 152 3 0 chr13 44018345 44018655 -57854514 + AluSx SINE Alu 1 311 -1 326 319 32 48 chr13 44020188 44020436 -57852733 + L2 LINE L2 1356 1599 -1715 31 26 0 0 chr13 44020917 44020955 -57852214 + AT_rich Low_complexity Low_complexity 1 38 0 2333 208 54 7 chr13 44022957 44023529 -57849640 - L1MB5 LINE L1 -9 6165 5567 2148 124 3 0 chr13 44023632 44023923 -57849246 + AluSx SINE Alu 1 292 -20 2359 128 40 35 chr13 44023954 44024199 -57848970 - Tigger2a DNA MER2_type -2276 432 190 2720 96 5 8 chr13 44024199 44024575 -57848594 - THE1C LTR MaLR 0 375 1 8945 145 38 69 chr13 44024575 44026205 -57846964 - THE1C-int LTR MaLR 0 1580 1 2415 116 13 24 chr13 44026205 44026584 -57846585 - THE1C LTR MaLR 0 375 1 2359 128 40 35 chr13 44026584 44026766 -57846403 - Tigger2a DNA MER2_type -2517 191 1 203 353 0 0 chr13 44027113 44027198 -57845971 + A-rich Low_complexity Low_complexity 1 85 0 261 221 93 23 chr13 44028758 44028844 -57844325 + MIR SINE MIR 104 195 -67 193 333 113 56 chr13 44029526 44029935 -57843234 - L2 LINE L2 -31 3282 2851 359 267 20 0 chr13 44030314 44030415 -57842754 - LTR33 LTR ERVL -13 508 406 366 248 88 0 chr13 44030579 44030704 -57842465 - LTR33 LTR ERVL -376 145 10 527 278 5 73 chr13 44030733 44030938 -57842231 + L2 LINE L2 3123 3313 0 2044 118 0 24 chr13 44030981 44031289 -57841880 - AluSx SINE Alu 0 303 3 207 88 0 0 chr13 44031317 44031351 -57841818 + (CAA)n Simple_repeat Simple_repeat 1 34 0 2561 300 135 36 chr13 44031849 44032325 -57840844 - L2 LINE L2 -36 3236 2808 1901 173 3 0 chr13 44032325 44032620 -57840549 + AluSx SINE Alu 1 296 -16 2561 300 135 36 chr13 44032620 44033716 -57839453 - L2 LINE L2 -464 2808 1821 1890 160 44 0 chr13 44033716 44034010 -57839159 + AluSx SINE Alu 1 307 -5 2561 300 135 36 chr13 44034010 44034339 -57838830 - L2 LINE L2 -1451 1821 1526 2111 142 9 72 chr13 44034339 44034366 -57838803 + L1MA4 LINE L1 5869 5896 -404 2441 158 36 5 chr13 44034366 44034778 -57838391 - MSTB LTR MaLR -1 425 1 2111 142 9 72 chr13 44034778 44034982 -57838187 + L1MA4 LINE L1 5896 6059 -241 2297 120 7 0 chr13 44034982 44035290 -57837879 + AluSx SINE Alu 1 310 -2 2111 142 9 72 chr13 44035290 44035516 -57837653 + L1MA4 LINE L1 6059 6298 -2 2561 300 135 36 chr13 44035516 44035575 -57837594 - L2 LINE L2 -1746 1526 913 868 280 118 63 chr13 44035774 44035857 -57837312 - L2 LINE L2 -2378 936 859 821 168 0 0 chr13 44035857 44035988 -57837181 + FLAM_C SINE Alu 2 132 -1 868 280 118 63 chr13 44035988 44036648 -57836521 - L2 LINE L2 -2455 859 152 206 236 18 121 chr13 44037086 44037251 -57835918 - L2 LINE L2 -1881 1433 1286 203 189 0 0 chr13 44037498 44037535 -57835634 + A-rich Low_complexity Low_complexity 1 37 0 541 279 95 50 chr13 44038808 44039030 -57834139 - MIR SINE MIR -21 241 10 379 269 114 0 chr13 44039136 44039329 -57833840 - L1MC5 LINE L1 -36 7925 7711 2313 107 0 0 chr13 44039531 44039822 -57833347 - AluSq SINE Alu -22 291 1 651 312 86 72 chr13 44039960 44040469 -57832700 - L2 LINE L2 -36 3236 2699 2778 7 0 0 chr13 44040469 44040772 -57832397 - AluYa5 SINE Alu -8 303 1 651 312 86 72 chr13 44040772 44040979 -57832190 - L2 LINE L2 -573 2699 2496 2154 136 0 0 chr13 44041061 44041355 -57831814 + AluSx SINE Alu 1 294 -18 225 0 0 0 chr13 44042136 44042161 -57831008 + (TC)n Simple_repeat Simple_repeat 2 26 0 326 146 22 22 chr13 44042161 44042250 -57830919 + (TA)n Simple_repeat Simple_repeat 1 89 0 379 233 108 8 chr13 44044105 44044225 -57828944 + MIR SINE MIR 110 241 -21 338 275 202 26 chr13 44045015 44045208 -57827961 + MIR SINE MIR 28 254 -8 29 28 0 0 chr13 44045233 44045269 -57827900 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr13 44045473 44045507 -57827662 + AT_rich Low_complexity Low_complexity 1 34 0 1144 292 180 34 chr13 44045510 44046320 -57826849 + L2 LINE L2 2274 3229 -84 2316 48 61 3 chr13 44046320 44046614 -57826555 - AluY SINE Alu 0 311 1 1144 292 180 34 chr13 44046614 44046709 -57826460 + L2 LINE L2 3229 3309 -4 1461 224 188 26 chr13 44047484 44047980 -57825189 - MLT1E LTR MaLR 0 593 18 690 300 77 20 chr13 44048026 44048204 -57824965 + MIR SINE MIR 2 199 -63 2087 118 0 45 chr13 44048204 44048518 -57824651 + AluSx SINE Alu 1 300 -12 690 300 77 20 chr13 44048518 44048586 -57824583 + MIR SINE MIR 199 262 0 379 233 108 8 chr13 44049744 44049864 -57823305 - MIR SINE MIR -21 241 110 291 211 53 0 chr13 44051371 44051447 -57821722 - MLT1L LTR MaLR -336 279 200 294 50 0 0 chr13 44051484 44051524 -57821645 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1877 189 22 0 chr13 44051615 44051970 -57821199 - MLT1A1 LTR MaLR 0 365 3 205 275 209 39 chr13 44052241 44052423 -57820746 + L2 LINE L2 3101 3313 0 2508 81 0 0 chr13 44052447 44052757 -57820412 + AluSx SINE Alu 1 310 -2 183 80 0 0 chr13 44052757 44052782 -57820387 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 467 208 33 25 chr13 44054007 44054127 -57819042 + MER20B DNA MER1_type 53 173 -610 547 189 31 66 chr13 44054880 44055108 -57818061 - L1MEd LINE L1 -4974 1145 926 202 184 0 0 chr13 44055948 44055986 -57817183 + L2 LINE L2 3268 3305 -8 216 191 0 0 chr13 44056284 44056326 -57816843 + L2 LINE L2 3272 3313 0 454 304 36 0 chr13 44056352 44056490 -57816679 + MIR SINE MIR 120 262 0 830 135 0 57 chr13 44056630 44056771 -57816398 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr13 44056869 44056893 -57816276 + AT_rich Low_complexity Low_complexity 1 24 0 2115 137 0 0 chr13 44057875 44058175 -57814994 - AluSx SINE Alu -6 306 7 302 246 254 16 chr13 44059259 44059381 -57813788 + MIR SINE MIR 31 181 -81 358 200 0 0 chr13 44059685 44059750 -57813419 + Tigger2 DNA MER2_type 5 69 -2649 * 2492 138 9 29 chr13 44059740 44060195 -57812974 + Tigger2 DNA MER2_type 2273 2718 0 551 245 148 0 chr13 44060449 44060604 -57812565 + MER5A DNA MER1_type 10 187 -2 278 274 0 0 chr13 44060621 44060683 -57812486 + L2 LINE L2 3251 3312 -1 1645 167 3 42 chr13 44060810 44061121 -57812048 + AluJb SINE Alu 1 299 -13 564 295 52 12 chr13 44061948 44062121 -57811048 + MIR SINE MIR 24 203 -59 689 192 99 7 chr13 44062140 44062291 -57810878 + MIR SINE MIR 12 176 -86 28 0 0 0 chr13 44062299 44062327 -57810842 + AT_rich Low_complexity Low_complexity 1 28 0 2807 69 0 0 chr13 44062327 44062687 -57810482 - L1PA6 LINE L1 0 6154 5795 260 231 179 0 chr13 44062687 44062765 -57810404 + MIR SINE MIR 161 252 -10 1623 165 20 94 chr13 44063471 44063865 -57809304 + MLT1A1 LTR MaLR 1 365 0 372 257 63 51 chr13 44064170 44064345 -57808824 - MIR SINE MIR 0 262 86 2029 132 0 35 chr13 44064603 44064921 -57808248 - AluSx SINE Alu -4 308 2 374 271 75 75 chr13 44065166 44065354 -57807815 - MLT1L LTR MaLR -224 391 204 264 294 0 0 chr13 44065397 44065465 -57807704 - MLT1L LTR MaLR -530 85 18 279 292 138 65 chr13 44065497 44065788 -57807381 - L2 LINE L2 -75 3238 2927 1052 182 5 27 chr13 44066167 44066283 -57806886 + MER5A DNA MER1_type 6 118 -71 2187 158 30 57 chr13 44066283 44066721 -57806448 + MSTB LTR MaLR 1 426 0 1052 182 5 27 chr13 44066721 44066791 -57806378 + MER5A DNA MER1_type 118 188 -1 877 264 60 22 chr13 44066845 44067159 -57806010 - L2 LINE L2 -1009 2305 1980 278 213 0 16 chr13 44067261 44067322 -57805847 + MLT1L LTR MaLR 164 223 -392 250 0 0 0 chr13 44067489 44067518 -57805651 + MIR SINE MIR 122 150 -112 473 271 129 0 chr13 44067560 44067715 -57805454 + MLT1L LTR MaLR 441 615 0 343 319 127 24 chr13 44068283 44068449 -57804720 + MIR3 SINE MIR 17 199 -9 327 368 48 0 chr13 44070835 44070960 -57802209 - L2 LINE L2 0 3272 3142 213 154 0 0 chr13 44071121 44071160 -57802009 + GA-rich Low_complexity Low_complexity 1 39 0 183 42 0 0 chr13 44071188 44071212 -57801957 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 234 368 19 39 chr13 44071744 44071899 -57801270 - L2 LINE L2 -285 2987 2836 1913 129 0 50 chr13 44072394 44072711 -57800458 - AluSq SINE Alu -12 301 1 1447 232 139 16 chr13 44072827 44073267 -57799902 - MLT1F1 LTR MaLR -7 560 67 238 333 13 13 chr13 44073626 44073701 -57799468 - MLT1K LTR MaLR -213 375 301 528 221 90 28 chr13 44073858 44074003 -57799166 + MLT1I LTR MaLR 1 154 -255 4421 164 66 33 chr13 44074003 44075365 -57797804 - L1MB7 LINE L1 -2 6182 4777 491 351 89 8 chr13 44075369 44075617 -57797552 + MLT1I LTR MaLR 142 409 0 211 350 79 76 chr13 44075779 44076096 -57797073 - L2 LINE L2 -10 3262 2945 23 0 0 0 chr13 44077152 44077175 -57795994 + AT_rich Low_complexity Low_complexity 1 23 0 2095 120 0 0 chr13 44077669 44077979 -57795190 + AluSx SINE Alu 1 310 0 444 209 7 14 chr13 44077983 44078122 -57795047 + GA-rich Low_complexity Low_complexity 2 139 0 897 192 20 30 chr13 44078344 44078547 -57794622 - MLT1A1 LTR MaLR -155 210 10 235 284 12 25 chr13 44078948 44079029 -57794140 + HAL1b LINE L1 257 336 -1012 22 0 0 0 chr13 44079032 44079054 -57794115 + AT_rich Low_complexity Low_complexity 1 22 0 1995 97 14 0 chr13 44079054 44079332 -57793837 - L1PA8 LINE L1 -5 6167 5886 2417 73 7 0 chr13 44079346 44079646 -57793523 - AluSp SINE Alu -11 302 1 315 290 11 57 chr13 44079653 44079829 -57793340 + HAL1b LINE L1 496 663 -685 1714 193 0 3 chr13 44080506 44080802 -57792367 + AluJo SINE Alu 1 295 -17 1023 301 128 45 chr13 44080823 44082022 -57791147 + L1 LINE L1 2340 3707 -2439 2333 214 85 43 chr13 44082448 44083059 -57790110 + MLT1E1 LTR MaLR 7 643 -11 871 179 66 0 chr13 44083182 44083333 -57789836 + FRAM SINE Alu 1 159 -17 307 262 19 19 chr13 44083660 44083763 -57789406 + L1 LINE L1 4343 4445 -1701 909 197 6 33 chr13 44083871 44084054 -57789115 + AluJo SINE Alu 112 289 -23 350 264 83 21 chr13 44084202 44084346 -57788823 - MIR SINE MIR 0 262 110 217 247 178 14 chr13 44084990 44085063 -57788106 - L2 LINE L2 -2 3270 3186 1223 249 60 122 chr13 44085242 44085719 -57787450 - L2 LINE L2 -630 2684 2179 412 151 35 0 chr13 44085719 44085805 -57787364 + L1MB3 LINE L1 6094 6182 -1 1223 249 60 122 chr13 44085805 44085826 -57787343 - L2 LINE L2 -1135 2179 2158 1887 144 3 10 chr13 44085826 44086125 -57787044 + AluSx SINE Alu 1 297 -15 1223 249 60 122 chr13 44086125 44086510 -57786659 - L2 LINE L2 -1156 2158 1855 2319 166 90 4 chr13 44088387 44088852 -57784317 - MLT1D LTR MaLR 0 505 1 2028 145 127 18 chr13 44089150 44089536 -57783633 + MSTA LTR MaLR 1 428 0 208 208 21 0 chr13 44089630 44089726 -57783443 + (TA)n Simple_repeat Simple_repeat 1 98 0 386 239 0 77 chr13 44089733 44089850 -57783319 + L1MC4 LINE L1 6614 6721 -1321 1988 129 28 0 chr13 44090048 44090334 -57782835 + AluY SINE Alu 1 294 -17 599 268 105 14 chr13 44090514 44090723 -57782446 + MIR SINE MIR 21 248 -14 628 276 64 32 chr13 44090900 44091150 -57782019 - MIR SINE MIR -2 260 3 21 0 0 0 chr13 44091217 44091238 -57781931 + AT_rich Low_complexity Low_complexity 1 21 0 210 305 68 0 chr13 44091238 44091297 -57781872 - L2 LINE L2 -15 3298 3236 1012 136 22 5 chr13 44091629 44091813 -57781356 - L1MD2 LINE L1 -10 6349 6163 432 0 0 0 chr13 44091817 44091865 -57781304 + (TG)n Simple_repeat Simple_repeat 2 49 0 1702 166 86 13 chr13 44091879 44092193 -57780976 - MER1B DNA MER1_type 0 337 1 805 170 0 0 chr13 44092296 44092431 -57780738 - FRAM SINE Alu -2 174 40 1790 137 52 0 chr13 44092485 44092778 -57780391 - AluSq SINE Alu 0 307 1 831 251 133 42 chr13 44093557 44093820 -57779349 + Charlie8 DNA MER1_type 1 287 -2130 2063 198 14 24 chr13 44095638 44096147 -57777022 - MER69 DNA AcHobo -5 2521 2018 358 259 12 12 chr13 44096176 44096261 -57776908 - MER69 DNA AcHobo -2091 435 351 2031 101 0 0 chr13 44096277 44096555 -57776614 + AluSq SINE Alu 36 313 0 7208 49 6 0 chr13 44096572 44098158 -57775011 + L1PA7 LINE L1 4604 6154 0 545 201 241 6 chr13 44098409 44098583 -57774586 - MER69 DNA AcHobo -2195 331 117 1818 143 42 7 chr13 44099082 44099369 -57773800 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr13 44099686 44099710 -57773459 + AT_rich Low_complexity Low_complexity 1 24 0 799 310 108 27 chr13 44100236 44100643 -57772526 - MLT1K LTR MaLR -114 474 35 2587 106 86 5 chr13 44100853 44101249 -57771920 - MSTA LTR MaLR 0 428 1 607 189 126 13 chr13 44101637 44101796 -57771373 - MER63A DNA MER1_type -33 177 1 885 268 79 14 chr13 44102463 44102743 -57770426 - L2 LINE L2 -1260 2054 1757 230 0 33 0 chr13 44102909 44102939 -57770230 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 348 188 0 0 chr13 44104096 44104165 -57769004 + (TG)n Simple_repeat Simple_repeat 2 70 0 25 0 0 0 chr13 44104269 44104294 -57768875 + AT_rich Low_complexity Low_complexity 1 25 0 435 319 132 38 chr13 44104706 44104919 -57768250 - MIR SINE MIR -5 257 25 31 44 0 0 chr13 44105915 44105960 -57767209 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr13 44106141 44106172 -57766997 + AT_rich Low_complexity Low_complexity 1 31 0 180 200 60 40 chr13 44106346 44106396 -57766773 - L3 LINE CR1 -1 1576 1526 1359 244 81 108 chr13 44106756 44107358 -57765811 - MLT1G LTR MaLR -7 583 3 22 56 0 0 chr13 44107365 44107401 -57765768 + AT_rich Low_complexity Low_complexity 1 36 0 181 341 71 65 chr13 44107401 44107571 -57765598 - MIR3 SINE MIR -6 202 32 4542 151 53 17 chr13 44107764 44109001 -57764168 + L1PA16 LINE L1 4840 6157 -9 23 0 0 0 chr13 44109001 44109024 -57764145 + AT_rich Low_complexity Low_complexity 1 23 0 1957 167 0 0 chr13 44109489 44109783 -57763386 - AluJb SINE Alu -17 295 2 453 235 169 38 chr13 44110482 44110617 -57762552 + MIR SINE MIR 1 168 -94 378 0 0 0 chr13 44110617 44110659 -57762510 + (CA)n Simple_repeat Simple_repeat 2 43 0 453 235 169 38 chr13 44110659 44110706 -57762463 + MIR SINE MIR 168 207 -55 1130 223 81 108 chr13 44111425 44111576 -57761593 + MER113 DNA MER1_type? 1 154 -367 1852 179 3 0 chr13 44111576 44111861 -57761308 - AluJo SINE Alu -26 286 1 1130 223 81 108 chr13 44111861 44112238 -57760931 + MER113 DNA MER1_type? 154 515 -6 246 348 37 30 chr13 44112237 44112372 -57760797 + MIR SINE MIR 6 141 -121 * 190 273 86 58 chr13 44112654 44112793 -57760376 + L2 LINE L2 2124 2266 -1048 207 0 0 0 chr13 44113684 44113707 -57759462 + (T)n Simple_repeat Simple_repeat 1 23 0 302 202 172 20 chr13 44115056 44115155 -57758014 - L1MC4 LINE L1 0 8042 7929 943 85 0 0 chr13 44115157 44115287 -57757882 - AluSc SINE Alu -5 304 175 238 228 32 32 chr13 44115436 44115559 -57757610 - L1MC5 LINE L1 -279 7682 7560 336 153 16 12 chr13 44115606 44115740 -57757429 - Alu SINE Alu -6 296 246 2148 75 7 3 chr13 44116145 44116437 -57756732 + AluY SINE Alu 1 293 -18 570 209 80 25 chr13 44116563 44116726 -57756443 - MER20 DNA MER1_type -7 212 41 799 269 120 12 chr13 44116772 44117256 -57755913 - L1MC4 LINE L1 -547 7495 6960 210 71 0 0 chr13 44119280 44119308 -57753861 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 460 263 91 86 chr13 44119414 44119843 -57753326 - L1M2 LINE L1 -5710 1139 709 610 265 0 36 chr13 44120613 44120779 -57752390 - MIR SINE MIR -102 160 1 2125 75 31 20 chr13 44122476 44122769 -57750400 + AluSg SINE Alu 1 296 -14 387 280 85 7 chr13 44122795 44122931 -57750238 - MIR SINE MIR -51 157 12 1406 188 73 27 chr13 44123183 44123512 -57749657 - MER2 DNA MER2_type 0 344 1 1245 86 55 0 chr13 44124707 44124870 -57748299 - AluSp SINE Alu -7 306 135 220 295 167 0 chr13 44125942 44126020 -57747149 - L2 LINE L2 -4 3268 3178 2777 13 0 0 chr13 44126318 44126625 -57746544 - AluYa5 SINE Alu -4 307 1 957 179 0 0 chr13 44126633 44126784 -57746385 - FRAM SINE Alu -15 151 1 2089 128 19 28 chr13 44126803 44127163 -57746006 + THE1B LTR MaLR 1 357 -7 868 141 0 0 chr13 44127163 44127284 -57745885 - AluSq/x SINE Alu -191 121 1 851 283 151 43 chr13 44127536 44128262 -57744907 - L2 LINE L2 -330 2983 2175 1152 153 128 3 chr13 44128262 44128550 -57744619 + MER33 DNA MER1_type 1 324 0 851 283 151 43 chr13 44128550 44128596 -57744573 - L2 LINE L2 -1138 2175 2135 21 36 0 0 chr13 44128869 44128897 -57744272 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 44128955 44128977 -57744192 + AT_rich Low_complexity Low_complexity 1 22 0 306 312 55 9 chr13 44129210 44129319 -57743850 + L2 LINE L2 3197 3310 -3 2144 74 3 0 chr13 44129828 44130125 -57743044 + THE1A LTR MaLR 1 298 -57 1617 70 5 0 chr13 44130115 44130329 -57742840 + THE1A LTR MaLR 141 355 0 * 11932 90 6 1 chr13 44130329 44131901 -57741268 + THE1A-int LTR MaLR 1 1580 0 2751 84 0 0 chr13 44131901 44132256 -57740913 + THE1A LTR MaLR 1 355 0 446 196 0 0 chr13 44133729 44133812 -57739357 + MER5A DNA MER1_type 4 86 -103 370 202 34 34 chr13 44134159 44134248 -57738921 - MER5C DNA MER1_type -230 94 6 23 86 0 0 chr13 44135189 44135247 -57737922 + AT_rich Low_complexity Low_complexity 1 58 0 980 240 24 24 chr13 44135361 44135607 -57737562 + MIR SINE MIR 4 249 -13 1037 226 18 9 chr13 44136278 44136499 -57736670 + MER58A DNA MER1_type 2 224 0 213 184 66 0 chr13 44137338 44137414 -57735755 + (TTA)n Simple_repeat Simple_repeat 2 82 0 228 338 25 0 chr13 44138661 44138741 -57734428 + L2 LINE L2 1839 1920 -1394 1709 182 7 3 chr13 44139132 44139428 -57733741 - AluJo SINE Alu -15 297 1 252 362 120 21 chr13 44139432 44139464 -57733705 + L2 LINE L2 2170 2197 -1117 2116 114 35 0 chr13 44139464 44139753 -57733416 - AluSx SINE Alu -13 299 1 252 362 120 21 chr13 44139753 44140054 -57733115 + L2 LINE L2 2197 2536 -778 634 344 73 59 chr13 44140257 44140681 -57732488 + L2 LINE L2 2842 3271 -1 528 301 9 0 chr13 44140696 44140901 -57732268 - L1ME2 LINE L1 0 6162 5950 350 103 0 0 chr13 44141026 44141084 -57732085 + Alu SINE Alu 245 302 0 381 271 88 51 chr13 44141145 44141735 -57731434 - L1M4 LINE L1 -2967 3179 2568 300 312 67 32 chr13 44141891 44142266 -57730903 - HAL1b LINE L1 -808 540 153 3299 59 9 5 chr13 44143552 44143977 -57729192 + L1PA8 LINE L1 5746 6172 0 23 0 0 0 chr13 44144070 44144093 -57729076 + AT_rich Low_complexity Low_complexity 1 23 0 1334 267 53 24 chr13 44144368 44144825 -57728344 - L1M4 LINE L1 -830 5316 4874 2374 81 0 7 chr13 44144825 44145122 -57728047 + AluY SINE Alu 1 295 -16 1334 267 53 24 chr13 44145122 44145302 -57727867 - L1M4 LINE L1 -1272 4874 4655 2426 143 3 3 chr13 44145302 44145666 -57727503 - THE1B LTR MaLR 0 364 1 1334 267 53 24 chr13 44145666 44145727 -57727442 - L1M4 LINE L1 -1491 4655 4597 346 292 0 5 chr13 44146656 44146867 -57726302 + G-rich Low_complexity Low_complexity 1 209 0 349 268 57 77 chr13 44146882 44147128 -57726041 + MIR SINE MIR 22 262 0 711 241 97 35 chr13 44147488 44147716 -57725453 + L2 LINE L2 1222 1463 -1851 2723 281 95 27 chr13 44147834 44148319 -57724850 + L2 LINE L2 1928 2378 -935 2488 75 13 0 chr13 44148319 44148626 -57724543 - AluSp SINE Alu -2 311 1 2723 281 95 27 chr13 44148626 44149247 -57723922 + L2 LINE L2 2378 3104 -209 198 0 0 0 chr13 44149389 44149411 -57723758 + (A)n Simple_repeat Simple_repeat 1 22 0 922 116 0 0 chr13 44149827 44149948 -57723221 - AluSq/x SINE Alu -191 121 1 912 160 29 3 chr13 44149949 44150221 -57722948 - L1M3 LINE L1 -740 5440 5164 1735 196 93 10 chr13 44150227 44150711 -57722458 - L1M3 LINE L1 -1107 5039 4516 2089 236 22 28 chr13 44150715 44151351 -57721818 - L1M3 LINE L1 -1782 4364 3733 371 139 76 0 chr13 44151376 44151455 -57721714 - L1MB2 LINE L1 -7 6164 6080 1458 153 21 60 chr13 44151456 44151973 -57721196 + L1MB2 LINE L1 5391 6037 -134 259 222 138 24 chr13 44151971 44152070 -57721099 - L1MEc LINE L1 -4118 2278 2192 * 1582 220 42 16 chr13 44152070 44152456 -57720713 - MSTD LTR MaLR 0 396 1 259 222 138 24 chr13 44152456 44152523 -57720646 - L1MEc LINE L1 -4204 2192 2093 6299 103 18 43 chr13 44152524 44153552 -57719617 + LTR13 LTR ERVK 1 1002 -5 591 281 142 7 chr13 44153570 44154015 -57719154 - L1MEc LINE L1 -4312 2084 1580 1705 179 0 24 chr13 44154202 44154498 -57718671 + AluJo SINE Alu 1 289 -23 2226 106 3 10 chr13 44155109 44155412 -57717757 - AluSx SINE Alu -11 301 1 2239 72 7 0 chr13 44155985 44156264 -57716905 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr13 44156264 44156293 -57716876 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 465 312 24 76 chr13 44156630 44156880 -57716289 + L1MEd LINE L1 599 835 -5284 2637 154 10 2 chr13 44157195 44157675 -57715494 + L1MA9 LINE L1 5304 5787 -525 1985 140 86 37 chr13 44157675 44158083 -57715086 + Tigger2a DNA MER2_type 1 428 -6 1662 204 59 31 chr13 44158089 44158565 -57714604 + L1MA9 LINE L1 5786 6274 -38 373 363 38 19 chr13 44158578 44158790 -57714379 + L1M4 LINE L1 3347 3562 -2584 1716 148 25 74 chr13 44158803 44159167 -57714002 - MER7A DNA MER2_type -2 344 1 1009 243 67 45 chr13 44159194 44159642 -57713527 - L1MEc LINE L1 -5304 901 444 1199 264 65 37 chr13 44159902 44160391 -57712778 - MLT1D LTR MaLR 0 505 3 1049 233 108 39 chr13 44160436 44161000 -57712169 - LTR48B LTR ERV1 0 644 1 10208 233 22 25 chr13 44161453 44162642 -57710527 - L1P LINE L1 -961 5185 3995 304 28 0 0 chr13 44162642 44162678 -57710491 + (TTA)n Simple_repeat Simple_repeat 1 180 0 1741 192 0 0 chr13 44162678 44162959 -57710210 - AluJo SINE Alu -1 316 1 10208 233 22 25 chr13 44162959 44163736 -57709433 - L1P LINE L1 -2150 3996 3219 2041 138 0 10 chr13 44163736 44164047 -57709122 - AluSx SINE Alu -2 310 3 10208 233 22 25 chr13 44164047 44164246 -57708923 - L1P LINE L1 -2927 3219 3021 1943 148 7 16 chr13 44164246 44164551 -57708618 - AluSx SINE Alu -10 302 1 10208 233 22 25 chr13 44164551 44166128 -57707041 - L1P LINE L1 -3125 3021 1452 306 270 67 70 chr13 44166587 44166946 -57706223 - L1MCa LINE L1 -4939 1487 1130 551 317 29 10 chr13 44167685 44167890 -57705279 - MIR SINE MIR -6 256 48 21 0 0 0 chr13 44169236 44169257 -57703912 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr13 44169454 44169475 -57703694 + (A)n Simple_repeat Simple_repeat 1 21 0 1629 189 14 0 chr13 44171938 44172234 -57700935 + AluJb SINE Alu 1 300 -12 5687 128 24 25 chr13 44173022 44174457 -57698712 - L1PB2 LINE L1 0 6151 4716 2280 102 3 0 chr13 44174872 44175176 -57697993 - AluSq SINE Alu -8 305 1 279 322 62 34 chr13 44175196 44175342 -57697827 + MIR3 SINE MIR 20 169 -39 235 197 30 0 chr13 44175343 44175409 -57697760 + (TTTAA)n Simple_repeat Simple_repeat 2 69 0 2129 117 0 0 chr13 44178151 44178441 -57694728 + AluSg SINE Alu 1 290 -20 22 56 0 0 chr13 44178883 44178919 -57694250 + AT_rich Low_complexity Low_complexity 1 36 0 949 244 126 33 chr13 44179515 44179879 -57693290 - MER68 LTR ERV1 -155 407 10 31 68 0 0 chr13 44180059 44180118 -57693051 + AT_rich Low_complexity Low_complexity 1 59 0 270 160 0 0 chr13 44180170 44180220 -57692949 + (TG)n Simple_repeat Simple_repeat 1 50 0 236 283 42 50 chr13 44180513 44180633 -57692536 - MIR SINE MIR -60 202 84 362 213 27 0 chr13 44180949 44181024 -57692145 - MIR SINE MIR -3 259 183 242 358 66 83 chr13 44181306 44181594 -57691575 - L3b LINE CR1 -19 1564 1282 26 0 0 0 chr13 44182454 44182480 -57690689 + AT_rich Low_complexity Low_complexity 1 26 0 558 296 86 15 chr13 44183038 44183305 -57689864 - L3b LINE CR1 -196 1387 1102 713 215 37 84 chr13 44183318 44183509 -57689660 - MER5A DNA MER1_type -1 188 7 1918 136 3 17 chr13 44184121 44184415 -57688754 - AluSx SINE Alu -22 290 1 261 326 156 18 chr13 44185174 44185370 -57687799 + MIR SINE MIR 15 238 -24 321 313 15 45 chr13 44187648 44187782 -57685387 - MIR SINE MIR -12 250 121 405 345 49 22 chr13 44188026 44188252 -57684917 + MIR SINE MIR 26 257 -5 181 321 107 24 chr13 44188302 44188386 -57684783 - L2 LINE L2 -50 3222 3132 203 122 0 24 chr13 44188581 44188622 -57684547 + (CA)n Simple_repeat Simple_repeat 2 41 0 246 298 121 32 chr13 44188733 44188857 -57684312 + LTR67 LTR ERVL 2 136 -421 351 268 173 28 chr13 44189047 44189226 -57683943 - MER63A DNA MER1_type -5 205 1 372 336 8 25 chr13 44189240 44189437 -57683732 - L1ME LINE L1 -503 5659 5469 490 252 153 42 chr13 44189457 44189602 -57683567 - L1ME LINE L1 -1466 4680 4552 691 286 55 0 chr13 44189602 44189801 -57683368 + MER63A DNA MER1_type 1 210 0 490 252 153 42 chr13 44189801 44190008 -57683161 - L1ME LINE L1 -1594 4552 4289 848 244 4 25 chr13 44190136 44190336 -57682833 - L1MB7 LINE L1 -227 5957 5761 604 75 0 0 chr13 44190336 44190416 -57682753 - MADE1 DNA Mariner 0 80 1 848 244 4 25 chr13 44190416 44190453 -57682716 - L1MB7 LINE L1 -423 5761 5725 1759 223 48 31 chr13 44192253 44192707 -57680462 - MLT1C LTR MaLR 0 467 6 897 294 127 8 chr13 44192876 44193277 -57679892 - Charlie7 DNA MER1_type -2155 457 9 571 150 88 0 chr13 44193357 44193470 -57679699 + MER3 DNA MER1_type 87 209 0 2138 113 0 0 chr13 44194289 44194571 -57678598 - AluSx SINE Alu -28 284 3 1928 127 14 0 chr13 44195375 44195658 -57677511 + AluSx SINE Alu 1 287 -25 35 0 0 0 chr13 44195658 44195693 -57677476 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr13 44197324 44197345 -57675824 + (TTA)n Simple_repeat Simple_repeat 1 21 0 5613 132 56 11 chr13 44197468 44197767 -57675402 + L1MA4 LINE L1 4689 4973 -1327 1370 164 131 15 chr13 44197767 44198035 -57675134 + AluSg1 SINE Alu 1 299 -10 5613 132 56 11 chr13 44198035 44198494 -57674675 + L1MA4 LINE L1 4973 5410 -890 2410 135 66 5 chr13 44198494 44198901 -57674268 + MSTB1 LTR MaLR 1 432 0 5613 132 56 11 chr13 44198901 44199191 -57673978 + L1MA4 LINE L1 5410 5686 -614 180 111 0 0 chr13 44199191 44199218 -57673951 + (TATG)n Simple_repeat Simple_repeat 2 28 0 297 75 0 0 chr13 44199218 44199258 -57673911 + (CA)n Simple_repeat Simple_repeat 2 41 0 5613 132 56 11 chr13 44199258 44199743 -57673426 + L1MA4 LINE L1 5685 6300 0 256 229 14 0 chr13 44200198 44200268 -57672901 - L1MA9 LINE L1 -8 6304 6234 23 0 0 0 chr13 44200330 44200353 -57672816 + AT_rich Low_complexity Low_complexity 1 23 0 1802 144 13 39 chr13 44201158 44201464 -57671705 + AluSx SINE Alu 1 298 -14 1500 94 18 0 chr13 44201629 44201852 -57671317 - L1PA10 LINE L1 0 6168 5942 245 366 147 16 chr13 44202472 44202723 -57670446 + L2 LINE L2 2391 2674 -640 303 28 0 0 chr13 44204072 44204108 -57669061 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 71 0 0 chr13 44204209 44204251 -57668918 + AT_rich Low_complexity Low_complexity 1 42 0 880 294 110 32 chr13 44204483 44205275 -57667894 - L1MEc LINE L1 -5255 1141 288 309 297 8 23 chr13 44205322 44205450 -57667719 - L1MEc LINE L1 -6196 200 75 5729 128 37 21 chr13 44209490 44209981 -57663188 - L1MA5 LINE L1 -5 6295 5813 1450 151 29 131 chr13 44209981 44210219 -57662950 - MER2 DNA MER2_type 0 344 158 1753 143 70 7 chr13 44210219 44210506 -57662663 + AluSp SINE Alu 1 305 -8 1450 151 29 131 chr13 44210506 44210650 -57662519 - MER2 DNA MER2_type -186 158 1 5729 128 37 21 chr13 44210650 44211029 -57662140 - L1MA5 LINE L1 -487 5813 5441 2443 150 61 14 chr13 44211029 44211469 -57661700 - LOR1b LTR ERV1 0 461 1 5729 128 37 21 chr13 44211469 44211576 -57661593 - L1MA5 LINE L1 -859 5441 5337 2102 110 7 23 chr13 44211576 44211886 -57661283 - AluSx SINE Alu -7 305 1 207 69 0 0 chr13 44211895 44211924 -57661245 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5729 128 37 21 chr13 44211924 44212150 -57661019 - L1MA5 LINE L1 -970 5330 5063 435 255 181 59 chr13 44212455 44212659 -57660510 + MIR SINE MIR 2 230 -32 21 82 0 0 chr13 44212762 44212811 -57660358 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr13 44213056 44213079 -57660090 + (T)n Simple_repeat Simple_repeat 1 23 0 2650 278 98 27 chr13 44213221 44213839 -57659330 - L2 LINE L2 -209 3104 2532 2470 75 13 0 chr13 44213839 44214146 -57659023 + AluSp SINE Alu 1 311 -2 2650 278 98 27 chr13 44214146 44214631 -57658538 - L2 LINE L2 -781 2532 1928 703 246 97 35 chr13 44214749 44214977 -57658192 - L2 LINE L2 -1851 1463 1222 678 246 55 55 chr13 44215337 44215593 -57657576 - MIR SINE MIR 0 262 7 2641 52 0 0 chr13 44215912 44216221 -57656948 - AluY SINE Alu -2 309 1 1975 145 10 3 chr13 44216383 44216679 -57656490 + AluSx SINE Alu 2 299 -13 424 246 63 8 chr13 44218125 44218251 -57654918 - MLT1L LTR MaLR -17 598 466 1340 133 8 68 chr13 44218300 44218469 -57654700 - LTR8 LTR ERV1 0 691 538 2130 121 0 13 chr13 44218469 44218767 -57654402 - AluSq SINE Alu -17 296 3 1340 133 8 68 chr13 44218767 44218831 -57654338 - LTR8 LTR ERV1 -153 538 472 723 78 0 0 chr13 44218822 44218912 -57654257 - LTR8 LTR ERV1 -367 324 235 * 2920 87 72 5 chr13 44218913 44219290 -57653879 + MLT2A1 LTR ERVL 2 411 -33 504 0 0 0 chr13 44219290 44219346 -57653823 + (TA)n Simple_repeat Simple_repeat 2 57 0 2920 87 72 5 chr13 44219346 44219383 -57653786 + MLT2A1 LTR ERVL 411 444 0 5351 76 0 9 chr13 44219383 44219810 -57653359 + HERVL-A1 LTR ERVL 1 421 -5233 5227 97 54 4 chr13 44219810 44220553 -57652616 - LTR17 LTR ERV1 0 780 1 5351 76 0 9 chr13 44220553 44220822 -57652347 + HERVL-A1 LTR ERVL 421 691 -4963 * 25524 69 31 3 chr13 44220820 44224141 -57649028 + HERVL-A1 LTR ERVL 950 4365 -1289 320 48 0 0 chr13 44224141 44224183 -57648986 - LTR9 LTR ERV1 -570 42 1 1361 136 5 0 chr13 44224183 44224381 -57648788 - HUERS-P3 LTR ERV1 -1 8918 8720 600 181 8 15 chr13 44224535 44224668 -57648501 - MER51-int LTR ERV1 -2450 2565 2434 * 908 159 11 16 chr13 44224659 44224841 -57648328 - MER51-int LTR ERV1 -3692 4124 3944 17970 116 20 10 chr13 44224841 44227635 -57645534 - MER51-int LTR ERV1 -474 6944 1941 11264 169 115 28 chr13 44227648 44229465 -57643704 + L1P LINE L1 12 2149 -3997 1867 132 26 43 chr13 44229465 44229769 -57643400 + AluSg SINE Alu 1 299 -11 11264 169 115 28 chr13 44229769 44230705 -57642464 + L1P LINE L1 2149 3003 -3143 7321 91 5 0 chr13 44230703 44231714 -57641455 + L1P LINE L1 4069 5084 -1062 * 983 259 12 21 chr13 44231732 44232060 -57641109 + L1M4 LINE L1 932 1256 -5286 258 105 0 0 chr13 44233780 44233818 -57639351 + (T)n Simple_repeat Simple_repeat 1 38 0 1319 222 18 88 chr13 44234508 44234904 -57638265 - MLT1E1 LTR MaLR 0 654 287 2107 117 60 23 chr13 44235021 44235371 -57637798 - THE1B LTR MaLR 0 364 2 8501 103 4 2 chr13 44235372 44236516 -57636653 - THE1B-int LTR MaLR 0 1580 434 2182 119 54 23 chr13 44236550 44236903 -57636266 + THE1B LTR MaLR 1 364 0 3447 70 15 2 chr13 44236903 44237361 -57635808 + THE1B-int LTR MaLR 1 464 -1116 592 131 215 0 chr13 44237361 44237468 -57635701 - LTR57 LTR ERVL -281 130 1 218 329 114 33 chr13 44237510 44237893 -57635276 - L2 LINE L2 -190 3082 2641 482 291 35 47 chr13 44239559 44239731 -57633438 + MIR SINE MIR 59 228 -34 181 324 179 39 chr13 44239761 44239968 -57633201 + L2 LINE L2 2545 2780 -534 367 159 24 109 chr13 44240836 44241008 -57632161 + MER5C DNA MER1_type 75 324 0 905 279 81 12 chr13 44241150 44241473 -57631696 + MLT1G LTR MaLR 234 578 -12 422 205 111 26 chr13 44242227 44242344 -57630825 - MIR SINE MIR -12 250 124 298 195 188 29 chr13 44242686 44242809 -57630360 + MIR SINE MIR 32 172 -36 347 328 108 42 chr13 44243384 44243762 -57629407 + L2 LINE L2 2894 3296 -17 238 219 26 132 chr13 44243762 44243876 -57629293 - MIR SINE MIR -129 133 32 271 246 42 8 chr13 44243898 44243992 -57629177 - MIR SINE MIR -50 212 116 368 221 39 48 chr13 44244319 44244423 -57628746 - L2 LINE L2 -2 3270 3168 2463 67 0 3 chr13 44244614 44244912 -57628257 + AluSp SINE Alu 1 297 -16 21 89 0 0 chr13 44245036 44245092 -57628077 + AT_rich Low_complexity Low_complexity 1 56 0 657 233 178 0 chr13 44245448 44245628 -57627541 - MIR SINE MIR -10 252 41 381 313 23 16 chr13 44246006 44246134 -57627035 + MIR SINE MIR 124 252 -10 1922 135 4 0 chr13 44246568 44246842 -57626327 - AluSx SINE Alu -3 309 35 2254 111 0 0 chr13 44247006 44247313 -57625856 - AluSx SINE Alu -5 307 1 28 29 0 0 chr13 44247321 44247356 -57625813 + AT_rich Low_complexity Low_complexity 1 35 0 350 241 61 100 chr13 44248502 44248679 -57624490 - HAL1 LINE L1 -847 1660 1495 2073 146 0 0 chr13 44248679 44248974 -57624195 - AluSx SINE Alu -17 295 1 350 241 61 100 chr13 44248974 44249057 -57624112 - HAL1 LINE L1 -1012 1495 1410 41 48 0 0 chr13 44251486 44251548 -57621621 + AT_rich Low_complexity Low_complexity 1 62 0 281 57 0 0 chr13 44251550 44251585 -57621584 + U2 snRNA snRNA 1 35 -153 402 315 158 27 chr13 44251788 44252118 -57621051 + L2 LINE L2 2931 3303 -10 21 0 0 56 chr13 44252270 44252287 -57620882 + AT_rich Low_complexity Low_complexity 1 17 -17 2201 91 0 46 chr13 44252287 44252594 -57620575 - AluSq SINE Alu -20 293 1 21 0 0 56 chr13 44252594 44252612 -57620557 + AT_rich Low_complexity Low_complexity 17 34 0 188 277 117 51 chr13 44252612 44252749 -57620420 - L2 LINE L2 -2480 834 689 306 247 52 21 chr13 44253282 44253379 -57619790 - L2 LINE L2 -1336 1978 1879 194 119 0 71 chr13 44253780 44253822 -57619347 - L2 LINE L2 -8 3264 3226 22 0 0 0 chr13 44253960 44253982 -57619187 + AT_rich Low_complexity Low_complexity 1 22 0 225 385 0 0 chr13 44254065 44254148 -57619021 - MARNA DNA Mariner -412 174 92 284 341 82 30 chr13 44254567 44254702 -57618467 + L2 LINE L2 2603 2744 -570 393 136 0 0 chr13 44254737 44254796 -57618373 - Tigger5 DNA MER2_type -21 2302 2244 2237 110 0 0 chr13 44255176 44255467 -57617702 + AluSx SINE Alu 1 291 -21 1785 184 0 7 chr13 44255846 44256140 -57617029 + AluJo SINE Alu 1 292 -20 2105 136 0 7 chr13 44256461 44256769 -57616400 + AluJb SINE Alu 1 306 -6 354 241 18 80 chr13 44261098 44261210 -57611959 - L2 LINE L2 0 3313 3209 2177 123 3 0 chr13 44263347 44263657 -57609512 - AluSq SINE Alu 0 313 3 2496 74 10 0 chr13 44263909 44264219 -57608950 - AluSp SINE Alu 0 313 1 446 259 19 12 chr13 44265526 44265688 -57607481 + MER103 DNA DNA 4 166 0 22 35 0 0 chr13 44266016 44266045 -57607124 + AT_rich Low_complexity Low_complexity 1 29 0 1508 176 59 42 chr13 44266359 44266666 -57606503 + AluJo SINE Alu 1 312 0 21 0 0 0 chr13 44267866 44267887 -57605282 + AT_rich Low_complexity Low_complexity 1 21 0 247 314 0 41 chr13 44268051 44268172 -57604997 + CT-rich Low_complexity Low_complexity 2 117 0 22 56 0 0 chr13 44269285 44269321 -57603848 + AT_rich Low_complexity Low_complexity 1 36 0 616 160 246 12 chr13 44269605 44269769 -57603400 + MIR SINE MIR 15 217 -45 542 313 93 16 chr13 44270867 44271244 -57601925 + L1ME LINE L1 5414 5819 -302 266 200 0 31 chr13 44273050 44273115 -57600054 - MIR SINE MIR -16 246 184 216 262 38 115 chr13 44273411 44273594 -57599575 + MIR SINE MIR 88 256 -6 1810 138 57 46 chr13 44273849 44274219 -57598950 - THE1C LTR MaLR 0 375 2 7826 120 119 38 chr13 44274220 44275679 -57597490 - THE1C-int LTR MaLR 0 1580 4 1722 124 84 70 chr13 44275682 44276052 -57597117 - THE1C LTR MaLR 0 375 1 487 322 30 45 chr13 44277539 44277738 -57595431 - MIR SINE MIR -20 242 47 2512 53 13 0 chr13 44278037 44278338 -57594831 - AluY SINE Alu -6 305 1 579 325 172 47 chr13 44278638 44279115 -57594054 + L3 LINE CR1 798 1387 -190 2503 69 0 3 chr13 44279115 44279420 -57593749 + AluSp SINE Alu 1 304 -9 579 325 172 47 chr13 44279420 44279624 -57593545 + L3 LINE CR1 1387 1564 -13 2399 86 3 16 chr13 44280000 44280313 -57592856 - AluSc SINE Alu 0 309 1 345 323 183 0 chr13 44281355 44281519 -57591650 - MIR SINE MIR -50 212 19 2387 133 42 35 chr13 44281791 44282248 -57590921 + L1MA9 LINE L1 5853 6312 0 353 204 136 0 chr13 44282407 44282495 -57590674 + MIR SINE MIR 111 210 -52 26 0 0 0 chr13 44283784 44283810 -57589359 + AT_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr13 44284056 44284088 -57589081 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2067 130 0 7 chr13 44284221 44284505 -57588664 + AluSx SINE Alu 1 282 -30 2021 143 3 10 chr13 44285139 44285440 -57587729 + AluSx SINE Alu 1 299 -13 724 167 23 0 chr13 44285680 44285812 -57587357 - MER20 DNA MER1_type -1 218 84 2629 42 0 0 chr13 44286805 44287116 -57586053 - AluY SINE Alu 0 311 1 228 67 0 0 chr13 44289106 44289136 -57584033 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 2221 92 0 43 chr13 44289489 44289793 -57583376 - AluSq SINE Alu -17 296 6 396 90 60 0 chr13 44289793 44289860 -57583309 + Charlie5 DNA MER1_type 2515 2585 -27 6945 148 16 15 chr13 44290362 44290717 -57582452 + L1M1 LINE L1 4003 4356 -1948 1887 159 0 25 chr13 44290717 44291032 -57582137 - AluJb SINE Alu -5 307 1 6945 148 16 15 chr13 44291032 44292351 -57580818 + L1M1 LINE L1 4356 5673 -631 197 243 0 0 chr13 44293366 44293403 -57579766 + L2 LINE L2 3228 3264 -8 194 322 148 0 chr13 44294128 44294243 -57578926 - L2 LINE L2 -575 2739 2608 24 32 0 0 chr13 44295158 44295189 -57577980 + AT_rich Low_complexity Low_complexity 1 31 0 631 269 27 62 chr13 44295968 44296116 -57577053 - MLT1K LTR MaLR -10 578 441 2542 36 10 7 chr13 44296116 44296421 -57576748 - AluY SINE Alu -5 306 1 631 269 27 62 chr13 44296421 44296528 -57576641 - MLT1K LTR MaLR -147 441 332 289 322 0 26 chr13 44296888 44297003 -57576166 + GA-rich Low_complexity Low_complexity 3 114 0 305 279 96 10 chr13 44297153 44297257 -57575912 + MER5B DNA MER1_type 63 175 -3 389 315 65 22 chr13 44297823 44298007 -57575162 - MIR SINE MIR 0 262 71 21 0 0 0 chr13 44299935 44299956 -57573213 + AT_rich Low_complexity Low_complexity 1 21 0 899 283 47 6 chr13 44300204 44300522 -57572647 + L1MEc LINE L1 32 362 -6034 * 1777 200 58 54 chr13 44300521 44301291 -57571878 + L1ME1 LINE L1 4993 5763 -403 1054 152 152 62 chr13 44301304 44301427 -57571742 + AluJo SINE Alu 24 135 -177 2574 49 0 3 chr13 44301427 44301732 -57571437 + AluY SINE Alu 1 304 -7 1054 152 152 62 chr13 44301732 44301864 -57571305 + AluJo SINE Alu 135 302 -10 1273 203 31 60 chr13 44301871 44302289 -57570880 + L1ME1 LINE L1 5756 6161 -5 1859 180 0 3 chr13 44302338 44302643 -57570526 + AluJb SINE Alu 1 304 -8 11640 55 12 1 chr13 44302785 44304816 -57568353 + L1PA10 LINE L1 3888 5940 -228 2112 114 0 0 chr13 44304992 44305292 -57567877 - AluSg SINE Alu 0 300 1 414 286 9 18 chr13 44306019 44306131 -57567038 + MIR SINE MIR 70 180 -82 1106 228 120 11 chr13 44306132 44306514 -57566655 + MER90 LTR ERV1 9 432 -143 1180 209 154 48 chr13 44306514 44306950 -57566219 + MER74A LTR ERVL 1 482 -76 4299 91 11 19 chr13 44306978 44307624 -57565545 + LTR8 LTR ERV1 23 663 -28 1007 135 36 10 chr13 44307646 44307838 -57565331 + MER67C LTR ERV1 514 710 0 198 150 0 0 chr13 44308681 44308721 -57564448 + (T)n Simple_repeat Simple_repeat 1 40 0 400 273 102 6 chr13 44309215 44309391 -57563778 + MIR SINE MIR 5 197 -65 585 139 4 2 chr13 44309600 44309831 -57563338 + AluSx SINE Alu 1 280 -29 4095 142 114 9 chr13 44309920 44310666 -57562503 + LTR1B LTR ERV1 1 824 -2 243 189 0 0 chr13 44311501 44311554 -57561615 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 2436 177 76 66 chr13 44311698 44312382 -57560787 + LTR8 LTR ERV1 1 691 0 356 281 39 127 chr13 44312431 44312691 -57560478 + MIR SINE MIR 20 256 -6 570 141 0 10 chr13 44312741 44312840 -57560329 + MER4A LTR ERV1 1 98 -566 1668 114 165 73 chr13 44312840 44313209 -57559960 + MER4A LTR ERV1 261 663 -1 22 0 0 0 chr13 44313304 44313326 -57559843 + AT_rich Low_complexity Low_complexity 1 22 0 1059 100 14 0 chr13 44313508 44313648 -57559521 + AluSg/x SINE Alu 157 298 -14 240 283 272 0 chr13 44315474 44315566 -57557603 + L2 LINE L2 3139 3255 -17 1168 246 87 30 chr13 44315598 44315901 -57557268 + LTR16A LTR ERVL 1 336 -114 2136 109 7 14 chr13 44315901 44316058 -57557111 - AluSx SINE Alu -20 292 136 2386 95 0 0 chr13 44316058 44316364 -57556805 - AluSg1 SINE Alu -3 306 1 2136 109 7 14 chr13 44316364 44316500 -57556669 - AluSx SINE Alu -176 136 1 1168 246 87 30 chr13 44316500 44316622 -57556547 + LTR16A LTR ERVL 336 450 0 420 310 43 21 chr13 44316756 44316943 -57556226 + MIR3 SINE MIR 5 195 -13 195 219 24 0 chr13 44317466 44317507 -57555662 - L2 LINE L2 -6 3307 3266 1660 200 0 7 chr13 44317562 44317852 -57555317 + AluJo SINE Alu 1 288 -24 6553 65 9 3 chr13 44318095 44319008 -57554161 - L1PA8 LINE L1 -1 6171 5254 500 252 9 9 chr13 44320203 44320318 -57552851 + L2 LINE L2 3180 3294 -19 470 254 70 22 chr13 44320470 44320698 -57552471 - L1MC5 LINE L1 -44 7917 7679 4098 126 59 11 chr13 44320726 44321457 -57551712 - L1PA13 LINE L1 -1 6162 5397 * 4492 198 23 1 chr13 44321455 44322452 -57550717 + L1M LINE L1 4384 5401 -759 366 292 20 41 chr13 44322858 44323053 -57550116 + HAL1 LINE L1 2313 2503 -4 196 342 21 58 chr13 44323194 44323275 -57549894 + L2 LINE L2 2561 2643 -671 2045 165 26 5 chr13 44323275 44323657 -57549512 + MLT1B LTR MaLR 1 390 0 196 342 21 58 chr13 44323657 44323765 -57549404 + L2 LINE L2 2643 2743 -571 392 162 0 0 chr13 44323879 44323947 -57549222 + Tigger2 DNA MER2_type 2 69 -2649 265 182 39 13 chr13 44323937 44324014 -57549155 + Tigger2 DNA MER2_type 2273 2351 -367 * 1759 151 76 49 chr13 44324062 44324374 -57548795 + Tigger2 DNA MER2_type 2298 2625 -93 2437 90 0 0 chr13 44324374 44324674 -57548495 - AluSx SINE Alu -12 300 1 1759 151 76 49 chr13 44324674 44324771 -57548398 + Tigger2 DNA MER2_type 2625 2718 0 224 308 0 0 chr13 44325085 44325137 -57548032 + L2 LINE L2 3242 3293 -20 249 318 11 11 chr13 44325387 44325475 -57547694 - MIR3 SINE MIR -1 207 120 269 289 40 0 chr13 44326562 44326638 -57546531 - L2 LINE L2 -38 3275 3197 3026 117 25 4 chr13 44326808 44327286 -57545883 + L1PA16 LINE L1 5668 6155 -11 2015 102 80 0 chr13 44327305 44327580 -57545589 + AluSq SINE Alu 1 297 -16 195 162 0 0 chr13 44327593 44327630 -57545539 + (TA)n Simple_repeat Simple_repeat 2 38 0 1620 265 161 6 chr13 44327675 44328220 -57544949 - L2 LINE L2 -281 3032 2375 2006 143 0 10 chr13 44328220 44328520 -57544649 + AluSx SINE Alu 1 297 -15 1620 265 161 6 chr13 44328520 44328611 -57544558 - L2 LINE L2 -938 2375 2299 256 354 83 28 chr13 44328907 44329051 -57544118 + L2 LINE L2 3119 3270 -2 527 259 135 0 chr13 44329253 44329413 -57543756 + MER5A DNA MER1_type 4 188 -1 894 216 6 0 chr13 44329433 44329614 -57543555 + MER58A DNA MER1_type 40 221 -3 2092 144 0 10 chr13 44329704 44330017 -57543152 - AluSx SINE Alu -2 310 1 23 0 0 0 chr13 44330173 44330196 -57542973 + AT_rich Low_complexity Low_complexity 1 23 0 2073 104 4 0 chr13 44331549 44331828 -57541341 - AluSx SINE Alu -4 308 29 659 217 89 15 chr13 44331931 44332288 -57540881 - MLT1C LTR MaLR -19 448 10 2085 119 0 0 chr13 44332704 44332982 -57540187 - AluSx SINE Alu -34 278 1 1274 256 97 29 chr13 44333456 44334179 -57538990 - HAL1 LINE L1 -725 1782 1011 1082 299 113 38 chr13 44334246 44335084 -57538085 - HAL1 LINE L1 -1599 908 8 427 198 125 0 chr13 44336017 44336113 -57537056 + MER81 DNA DNA 6 113 -1 470 233 0 0 chr13 44336547 44336637 -57536532 + 5S rRNA rRNA 1 90 -31 237 330 68 0 chr13 44337250 44337338 -57535831 - MIR SINE MIR -149 113 20 2271 93 0 0 chr13 44338326 44338616 -57534553 - AluSg SINE Alu -20 290 1 565 192 15 23 chr13 44339718 44339848 -57533321 - FLAM_A SINE Alu 0 142 14 213 211 115 0 chr13 44340735 44340787 -57532382 + MER5A DNA MER1_type 7 64 -125 1508 217 95 39 chr13 44340789 44341306 -57531863 + LTR55 LTR ERV 1 546 -2 608 252 8 0 chr13 44341306 44341433 -57531736 + MER5A DNA MER1_type 62 189 0 2390 185 60 8 chr13 44341516 44342014 -57531155 - MLT1F LTR MaLR 0 542 19 346 326 188 26 chr13 44342329 44342393 -57530776 + L2 LINE L2 2297 2349 -965 2517 170 19 0 chr13 44342393 44342811 -57530358 - MSTB LTR MaLR 0 426 1 346 326 188 26 chr13 44342811 44343050 -57530119 + L2 LINE L2 2349 2649 -665 248 361 142 0 chr13 44343035 44343204 -57529965 - L2 LINE L2 -620 2694 2502 * 377 330 65 97 chr13 44343397 44343748 -57529421 + L2 LINE L2 2933 3272 0 227 159 23 0 chr13 44343893 44343937 -57529232 - L2 LINE L2 -1 3312 3268 896 172 61 0 chr13 44344327 44344490 -57528679 + MER63A DNA MER1_type 1 173 -37 2418 65 3 7 chr13 44346806 44347112 -57526057 - AluY SINE Alu -4 307 3 2511 66 3 3 chr13 44347684 44347989 -57525180 + AluSp SINE Alu 1 305 -8 191 219 0 0 chr13 44348273 44348314 -57524855 - L2 LINE L2 -1 3312 3272 206 136 152 61 chr13 44348528 44348594 -57524575 - MIR SINE MIR -74 188 117 2046 113 27 3 chr13 44349060 44349353 -57523816 + AluSx SINE Alu 1 300 -12 563 213 180 0 chr13 44349782 44349932 -57523237 + MER5A DNA MER1_type 13 189 0 357 289 145 24 chr13 44350266 44350432 -57522737 + MIR SINE MIR 60 245 -17 431 256 77 24 chr13 44350778 44350946 -57522223 + MER5B DNA MER1_type 1 177 -1 402 286 16 8 chr13 44351556 44351682 -57521487 + MIR SINE MIR 133 259 -3 24 0 0 0 chr13 44351959 44351983 -57521186 + AT_rich Low_complexity Low_complexity 1 24 0 293 322 161 22 chr13 44352089 44352319 -57520850 + L2 LINE L2 2487 2748 -566 21 0 0 0 chr13 44352495 44352516 -57520653 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr13 44352863 44352914 -57520255 + AT_rich Low_complexity Low_complexity 1 51 0 5419 162 42 26 chr13 44352928 44354264 -57518905 - L1MA8 LINE L1 -30 6497 5109 2369 99 3 6 chr13 44354264 44354576 -57518593 + AluSp SINE Alu 1 311 -2 5419 162 42 26 chr13 44354576 44355393 -57517776 - L1MA8 LINE L1 -1418 5109 4306 2648 206 59 98 chr13 44355389 44356850 -57516319 - L1MA8 LINE L1 -2619 3763 2408 * 1676 262 98 17 chr13 44356915 44357065 -57516104 - L1MA8 LINE L1 -4296 2086 1950 2178 92 10 10 chr13 44357065 44357360 -57515809 + AluSq SINE Alu 1 295 -18 1676 262 98 17 chr13 44357360 44358061 -57515108 - L1MA8 LINE L1 -4432 1950 1108 413 263 0 17 chr13 44358076 44358194 -57514975 - L1MA8 LINE L1 -5771 532 417 1208 296 74 19 chr13 44358266 44358979 -57514190 - L1ME3A LINE L1 -233 5937 5265 303 28 0 0 chr13 44358979 44359015 -57514154 + (TG)n Simple_repeat Simple_repeat 2 37 0 1208 296 74 19 chr13 44359015 44359681 -57513488 - L1ME3A LINE L1 -905 5265 4476 337 220 63 73 chr13 44361059 44361165 -57512004 - L1 LINE L1 -1678 4468 4363 2081 130 3 3 chr13 44361165 44361464 -57511705 + AluSg SINE Alu 1 299 -11 337 220 63 73 chr13 44361464 44361548 -57511621 - L1 LINE L1 -1783 4363 4280 599 233 161 5 chr13 44361574 44361797 -57511372 + MIR SINE MIR 3 260 -2 403 282 65 31 chr13 44362538 44363153 -57510016 - L1MEd LINE L1 -4864 1255 562 2240 103 0 0 chr13 44363581 44363873 -57509296 - AluSg SINE Alu -18 292 1 439 317 54 31 chr13 44363897 44364121 -57509048 - MIR SINE MIR 0 262 34 265 256 23 0 chr13 44364232 44364318 -57508851 - L1MC4 LINE L1 -106 7936 7849 261 0 0 0 chr13 44365390 44365419 -57507750 + (CA)n Simple_repeat Simple_repeat 2 30 0 3078 103 15 9 chr13 44366054 44366512 -57506657 - L1PA10 LINE L1 -5 6163 5703 392 286 113 0 chr13 44367488 44367621 -57505548 + MIR SINE MIR 40 187 -75 1752 161 29 71 chr13 44367680 44367905 -57505264 - MSTD LTR MaLR -2 394 192 2035 130 36 0 chr13 44367905 44368206 -57504963 - AluSx SINE Alu 0 312 1 1752 161 29 71 chr13 44368206 44368391 -57504778 - MSTD LTR MaLR -204 192 1 424 208 63 31 chr13 44370953 44371112 -57502057 - MER106B DNA MER1_type 0 1059 896 1496 187 50 47 chr13 44371139 44371503 -57501666 + MLT1A1 LTR MaLR 1 365 0 194 404 103 13 chr13 44371535 44371691 -57501478 - L2 LINE L2 -186 3086 2917 3960 135 20 12 chr13 44371691 44371868 -57501301 + MER39B LTR ERV1 1 175 -478 2258 101 7 0 chr13 44371868 44372155 -57501014 + AluSg SINE Alu 1 289 -21 3960 135 20 12 chr13 44372155 44372623 -57500546 + MER39B LTR ERV1 175 651 -2 329 317 142 17 chr13 44372974 44373133 -57500036 + MIR SINE MIR 11 185 -59 1417 188 51 20 chr13 44373201 44373286 -57499883 + MLT1A1 LTR MaLR 4 85 -280 1804 203 28 18 chr13 44373286 44373676 -57499493 + MSTD LTR MaLR 1 394 -2 1417 188 51 20 chr13 44373676 44373941 -57499228 + MLT1A1 LTR MaLR 85 365 0 3125 265 37 56 chr13 44373950 44375157 -57498012 + ERVL-E LTR ERVL 1375 2558 -3206 928 266 5 69 chr13 44375158 44375513 -57497656 + MLT2C1 LTR ERVL 23 430 -34 1012 297 28 40 chr13 44375534 44375962 -57497207 + ERVL-E LTR ERVL 2583 3005 -2759 * 4207 252 64 55 chr13 44375960 44376542 -57496627 + ERVL-E LTR ERVL 3156 3731 -2033 2755 60 11 0 chr13 44376542 44376890 -57496279 + L1PA6 LINE L1 5794 6145 -9 4207 252 64 55 chr13 44376890 44377731 -57495438 + ERVL-E LTR ERVL 3731 4597 -1167 2138 112 7 10 chr13 44377731 44378036 -57495133 - AluSc SINE Alu -5 304 1 4207 252 64 55 chr13 44378036 44378207 -57494962 + ERVL-E LTR ERVL 4597 4765 -999 812 265 125 37 chr13 44378238 44378725 -57494444 + ERVL-E LTR ERVL 4970 5499 -265 974 177 0 19 chr13 44378746 44378904 -57494265 + FRAM SINE Alu 1 155 -21 919 149 119 0 chr13 44379059 44379253 -57493916 + MER46A DNA MER2_type 5 221 -15 284 313 10 0 chr13 44379261 44379360 -57493809 + ERVL-E LTR ERVL 5654 5753 -11 2022 248 48 48 chr13 44379364 44379988 -57493181 + MLT2E LTR ERVL 2 625 -3 986 277 123 16 chr13 44379991 44380414 -57492755 + L2 LINE L2 1580 2047 -1267 18351 152 28 16 chr13 44380427 44385029 -57488140 - L1P3 LINE L1 -1737 4724 2 186 43 0 0 chr13 44385203 44385226 -57487943 + (T)n Simple_repeat Simple_repeat 1 23 0 1679 164 23 0 chr13 44385348 44385652 -57487517 - L1MC1 LINE L1 -5 6328 6018 1410 293 56 63 chr13 44385663 44387341 -57485828 + L1PA12 LINE L1 1 2219 -5362 725 190 121 0 chr13 44387325 44387499 -57485670 + L1PA16 LINE L1 5972 6166 0 * 1147 127 32 124 chr13 44387501 44387599 -57485570 - L1MC1 LINE L1 -310 6034 5929 590 124 0 0 chr13 44387599 44387688 -57485481 - L1MC1 LINE L1 0 6333 6245 1147 127 32 124 chr13 44387688 44387904 -57485265 - L1MC1 LINE L1 -415 5929 5749 264 302 0 0 chr13 44387909 44387972 -57485197 + L2 LINE L2 3188 3250 -22 2414 69 0 7 chr13 44387974 44388278 -57484891 - AluY SINE Alu -9 302 1 11879 202 31 36 chr13 44388302 44388640 -57484529 - L1PA16 LINE L1 -8 6861 6523 2293 110 0 7 chr13 44388640 44388948 -57484221 - AluSg1 SINE Alu 0 309 4 11879 202 31 36 chr13 44388948 44393068 -57480101 - L1PA16 LINE L1 -346 6523 2784 2080 131 14 0 chr13 44393068 44393358 -57479811 - AluSx SINE Alu -18 294 1 11879 202 31 36 chr13 44393358 44396124 -57477045 - L1PA16 LINE L1 -4085 2784 6 181 395 25 0 chr13 44396319 44396400 -57476769 + L2 LINE L2 2567 2649 -665 306 73 0 0 chr13 44397206 44397247 -57475922 + (CA)n Simple_repeat Simple_repeat 1 41 0 268 283 141 0 chr13 44397820 44397919 -57475250 + MIR SINE MIR 32 144 -64 22 35 0 0 chr13 44398232 44398261 -57474908 + AT_rich Low_complexity Low_complexity 1 29 0 270 219 57 73 chr13 44398790 44398913 -57474256 - L1ME3A LINE L1 -88 6082 5962 1143 231 142 58 chr13 44399063 44399804 -57473365 - L1MC5 LINE L1 -472 7489 6687 1587 185 31 39 chr13 44399900 44400256 -57472913 + MLT1A1 LTR MaLR 13 365 0 24 0 0 0 chr13 44400372 44400396 -57472773 + AT_rich Low_complexity Low_complexity 1 24 0 2177 142 31 0 chr13 44400401 44400754 -57472415 - THE1B LTR MaLR 0 364 1 4865 150 54 25 chr13 44400754 44401432 -57471737 - L1MA5A LINE L1 -14 6283 5626 2293 119 0 0 chr13 44401432 44401727 -57471442 - AluSg SINE Alu -15 295 1 4865 150 54 25 chr13 44401727 44402016 -57471153 - L1MA5A LINE L1 -671 5626 5347 318 98 0 0 chr13 44402016 44402067 -57471102 + (CTTG)n Simple_repeat Simple_repeat 2 52 0 4865 150 54 25 chr13 44402067 44402418 -57470751 - L1MA5A LINE L1 -950 5347 4943 780 295 51 30 chr13 44405909 44406282 -57466887 + MLT1J1 LTR MaLR 58 438 -8 201 295 154 0 chr13 44406515 44406593 -57466576 - L2 LINE L2 -3 3310 3221 24 0 0 0 chr13 44407729 44407753 -57465416 + AT_rich Low_complexity Low_complexity 1 24 0 275 261 29 14 chr13 44410205 44410274 -57462895 + L2 LINE L2 2685 2754 -560 335 281 55 9 chr13 44410655 44410807 -57462362 - L1M3 LINE L1 -691 5477 5318 698 94 12 53 chr13 44410807 44410977 -57462192 + (TTCC)n Simple_repeat Simple_repeat 3 165 0 875 218 0 0 chr13 44410998 44411145 -57462024 - FRAM SINE Alu -29 147 1 317 304 131 10 chr13 44411232 44411794 -57461375 - L1M3 LINE L1 -933 5213 4573 392 310 0 70 chr13 44412240 44412398 -57460771 - MIR3 SINE MIR -5 203 57 1112 109 17 0 chr13 44413531 44413706 -57459463 - L1MA5A LINE L1 -2 6295 6118 2169 191 2 5 chr13 44414017 44414414 -57458755 - MLT2C2 LTR ERVL -68 396 1 313 300 0 12 chr13 44414579 44414659 -57458510 + L2 LINE L2 3137 3215 -57 1625 124 4 8 chr13 44415063 44415321 -57457848 + L1PB4 LINE L1 5897 6153 -3 255 388 29 0 chr13 44415754 44415857 -57457312 - MIR SINE MIR -137 125 20 458 305 109 14 chr13 44416077 44416287 -57456882 - MIR SINE MIR -31 231 2 269 340 43 74 chr13 44416297 44416384 -57456785 - L2 LINE L2 0 3272 3191 4197 127 50 19 chr13 44416384 44417122 -57456047 - L1PA16 LINE L1 -1 6165 5405 269 340 43 74 chr13 44417122 44417196 -57455973 - L2 LINE L2 -81 3191 3116 315 340 12 74 chr13 44417341 44417585 -57455584 - L2 LINE L2 -218 3054 2826 2134 162 29 0 chr13 44417762 44418175 -57454994 - L1P LINE L1 -3476 2670 2246 3752 103 11 21 chr13 44418175 44418734 -57454435 + L1PA13 LINE L1 5600 6155 -8 181 331 221 7 chr13 44419054 44419190 -57453979 - MIR SINE MIR -45 217 53 22 0 0 0 chr13 44420988 44421010 -57452159 + AT_rich Low_complexity Low_complexity 1 22 0 486 286 122 25 chr13 44421246 44421491 -57451678 + MLT1K LTR MaLR 307 575 -13 2045 176 112 48 chr13 44421691 44422238 -57450931 + L1MD3 LINE L1 7404 7985 -10 194 219 0 24 chr13 44422768 44422809 -57450360 + L2 LINE L2 3257 3296 -17 652 264 87 17 chr13 44422901 44423132 -57450037 - MIR SINE MIR -14 248 2 5107 90 4 11 chr13 44423200 44423942 -57449227 + L1P LINE L1 1 737 -5409 591 143 0 0 chr13 44424980 44425078 -57448091 - L1P4 LINE L1 -631 5535 5438 1466 163 43 0 chr13 44425078 44425332 -57447837 + L1PA16 LINE L1 5885 6153 -13 23 0 0 0 chr13 44425343 44425366 -57447803 + AT_rich Low_complexity Low_complexity 1 23 0 530 266 144 19 chr13 44425366 44425622 -57447547 - MLT1J1 LTR MaLR -116 330 43 477 267 97 12 chr13 44425635 44425800 -57447369 - MIR SINE MIR -70 192 14 462 209 11 0 chr13 44425908 44425999 -57447170 - Tigger7 DNA MER2_type 0 2487 2396 * 2441 199 48 0 chr13 44425998 44426496 -57446673 - Tigger7 DNA MER2_type -1965 522 1 304 267 80 83 chr13 44426671 44426950 -57446219 - L1MC/D LINE L1 -2132 5676 5397 2381 220 108 19 chr13 44426950 44427582 -57445587 + MER76 LTR ERV 1 688 0 304 267 80 83 chr13 44427582 44427725 -57445444 - L1MC/D LINE L1 -2411 5397 5255 359 276 171 44 chr13 44427942 44428286 -57444883 - L1MC/D LINE L1 -1127 5019 4632 453 292 0 0 chr13 44428369 44428540 -57444629 + (TA)n Simple_repeat Simple_repeat 2 172 0 228 236 45 22 chr13 44428540 44428629 -57444540 - L1MC4 LINE L1 -1337 6705 6615 228 269 0 65 chr13 44428642 44428735 -57444434 - L1MC4 LINE L1 -1341 6701 6615 237 281 23 7 chr13 44429021 44429147 -57444022 + MIR SINE MIR 8 224 -38 194 333 163 31 chr13 44429767 44429896 -57443273 + L2 LINE L2 2598 2743 -571 226 338 30 82 chr13 44430029 44430298 -57442871 + L2 LINE L2 3018 3272 0 245 346 15 23 chr13 44430362 44430492 -57442677 + MIR3 SINE MIR 1 129 -79 31961 46 1 3 chr13 44431045 44436100 -57437069 + L1PA3 LINE L1 1110 6155 0 189 0 0 0 chr13 44436446 44436467 -57436702 + (CA)n Simple_repeat Simple_repeat 1 21 0 1865 149 48 36 chr13 44437975 44438331 -57434838 + THE1B LTR MaLR 1 360 -4 243 247 67 45 chr13 44439324 44439413 -57433756 + MER81 DNA DNA 2 92 -22 442 300 167 0 chr13 44440620 44440770 -57432399 + MER5A DNA MER1_type 9 183 -6 318 314 41 21 chr13 44441660 44441809 -57431360 - MER5A DNA MER1_type -8 170 16 1990 143 0 0 chr13 44442185 44442465 -57430704 - AluJb SINE Alu -31 281 2 252 122 0 0 chr13 44442677 44442718 -57430451 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 313 112 21 chr13 44445372 44445605 -57427564 - MIR SINE MIR 0 262 9 21 0 0 0 chr13 44445685 44445706 -57427463 + AT_rich Low_complexity Low_complexity 1 21 0 2123 110 0 0 chr13 44445746 44446037 -57427132 + AluSx SINE Alu 1 291 -21 348 88 0 0 chr13 44447021 44447078 -57426091 + (T)n Simple_repeat Simple_repeat 1 57 0 195 42 0 0 chr13 44447271 44447295 -57425874 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 573 245 0 36 chr13 44447520 44447659 -57425510 - LTR28 LTR ERV1 0 1020 887 2040 204 230 73 chr13 44447662 44448539 -57424630 - LTR28 LTR ERV1 -37 983 1 230 200 0 18 chr13 44449621 44449676 -57423493 + T-rich Low_complexity Low_complexity 5 58 0 195 145 16 32 chr13 44450271 44450333 -57422836 + GA-rich Low_complexity Low_complexity 1 61 0 287 337 10 10 chr13 44451103 44451305 -57421864 + L1M4 LINE L1 4244 4445 -1701 268 244 92 42 chr13 44451602 44451721 -57421448 + L1ME4a LINE L1 5954 6078 -43 244 318 23 23 chr13 44454977 44455065 -57418104 - L2 LINE L2 -16 3256 3169 607 305 98 64 chr13 44455674 44455911 -57417258 - ERVL LTR ERVL -708 5056 4828 2663 29 3 0 chr13 44455911 44456221 -57416948 + AluY SINE Alu 1 311 0 607 305 98 64 chr13 44456221 44457209 -57415960 - ERVL LTR ERVL -936 4828 3727 2020 157 89 89 chr13 44459012 44459527 -57413642 + MLT2B2 LTR ERVL 1 515 0 296 299 44 88 chr13 44459765 44459902 -57413267 - L2 LINE L2 -5 3267 3137 2193 139 19 27 chr13 44460083 44460450 -57412719 + THE1B LTR MaLR 1 364 0 5449 117 2 39 chr13 44460468 44461079 -57412090 - THE1-int LTR MaLR -516 1064 432 7600 29 0 0 chr13 44461079 44462056 -57411113 - L1PA3 LINE L1 -3 6152 5175 13799 23 0 0 chr13 44462065 44464450 -57408719 - L1PA2 LINE L1 0 6155 3771 5449 117 2 39 chr13 44464450 44464709 -57408460 - THE1-int LTR MaLR -1156 424 216 3861 86 0 4 chr13 44464704 44465225 -57407944 + THE1B-int LTR MaLR 1057 1575 -5 * 2172 131 19 45 chr13 44465229 44465603 -57407566 + THE1B LTR MaLR 1 364 0 195 330 45 23 chr13 44465669 44465757 -57407412 - L2 LINE L2 -309 2963 2874 893 321 93 42 chr13 44465856 44466380 -57406789 - L2 LINE L2 -559 2755 2205 2663 129 14 0 chr13 44466386 44466803 -57406366 - MER57B LTR ERV1 -11 423 1 233 315 117 30 chr13 44466803 44467000 -57406169 - L2 LINE L2 -1108 2206 1993 198 221 0 144 chr13 44467003 44467107 -57406062 - L2 LINE L2 -1605 1709 1621 454 292 20 1 chr13 44467446 44467665 -57405504 - ERVL LTR ERVL -287 5367 5145 389 308 0 15 chr13 44467881 44468011 -57405158 - ERVL LTR ERVL -829 4935 4808 1176 310 60 19 chr13 44468086 44468518 -57404651 + LTR16A LTR ERVL 1 450 0 714 321 50 0 chr13 44468541 44468803 -57404366 - ERVL LTR ERVL -1092 4672 4398 204 125 42 21 chr13 44468803 44468851 -57404318 + (TA)n Simple_repeat Simple_repeat 1 49 0 273 241 85 40 chr13 44469285 44469484 -57403685 + L1ME4a LINE L1 5912 6119 -2 23 33 0 0 chr13 44472734 44472764 -57400405 + AT_rich Low_complexity Low_complexity 1 30 0 2138 123 7 7 chr13 44473491 44473791 -57399378 + AluSx SINE Alu 6 305 -7 2127 118 3 7 chr13 44474349 44474655 -57398514 - AluSq SINE Alu -8 305 1 761 281 28 9 chr13 44476110 44476327 -57396842 - MIR SINE MIR -28 234 14 464 300 201 9 chr13 44476571 44476894 -57396275 - MLT1J2 LTR MaLR -1 449 65 279 323 115 15 chr13 44478940 44479070 -57394099 - MIR SINE MIR 0 262 120 741 213 35 5 chr13 44480255 44480452 -57392717 - Charlie4 DNA MER1_type 0 1961 1759 * 809 229 62 4 chr13 44480451 44480678 -57392491 - Charlie4 DNA MER1_type -1704 257 18 414 294 116 14 chr13 44480873 44481165 -57392004 + HAL1b LINE L1 986 1307 -41 3283 100 67 3 chr13 44481177 44481894 -57391275 - L1PA14 LINE L1 -1 7598 6722 * 14014 182 18 26 chr13 44481893 44485132 -57388037 - L1PA14 LINE L1 -1601 5983 2751 2124 138 0 3 chr13 44485132 44485437 -57387732 - AluSq SINE Alu -9 304 1 14014 182 18 26 chr13 44485437 44485893 -57387276 - L1PA14 LINE L1 -4833 2751 2293 231 255 0 0 chr13 44486008 44486055 -57387114 + MER115 DNA AcHobo 1 47 -646 188 355 32 0 chr13 44486059 44486121 -57387048 - L2 LINE L2 -48 3265 3202 25 31 0 0 chr13 44486783 44486815 -57386354 + AT_rich Low_complexity Low_complexity 1 32 0 297 284 53 11 chr13 44486856 44486951 -57386218 + MIR SINE MIR 110 208 -54 321 111 0 0 chr13 44486954 44486999 -57386170 - FAM SINE Alu -10 165 121 1568 190 105 0 chr13 44487043 44487348 -57385821 - MER1B DNA MER1_type 0 337 1 241 286 132 0 chr13 44487359 44487450 -57385719 - L2 LINE L2 -12 3301 3199 499 248 13 25 chr13 44487865 44487881 -57385288 - L1MA10 LINE L1 0 6334 6319 1431 205 150 92 chr13 44487881 44488456 -57384713 - L1ME2 LINE L1 -8 6156 5549 2507 97 28 0 chr13 44488533 44488895 -57384274 - L1PA13 LINE L1 0 6163 5792 336 48 0 0 chr13 44488896 44488938 -57384231 + (TG)n Simple_repeat Simple_repeat 2 43 0 267 228 22 0 chr13 44488938 44489030 -57384139 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 536 80 23 11 chr13 44489030 44489041 -57384128 - L1PA13 LINE L1 -369 5792 5783 297 0 0 0 chr13 44489041 44489074 -57384095 + (TA)n Simple_repeat Simple_repeat 2 34 0 536 80 23 11 chr13 44489074 44489150 -57384019 - L1PA13 LINE L1 -378 5783 5704 * 872 211 12 0 chr13 44489145 44489311 -57383858 - L1ME2 LINE L1 -606 5560 5393 * 4276 66 11 3 chr13 44489309 44489923 -57383246 - L1P LINE L1 -1267 4879 3996 3774 63 0 0 chr13 44489949 44490425 -57382744 - L1PA7 LINE L1 -3 6151 5676 1531 245 72 3 chr13 44490448 44491089 -57382080 - L1ME2 LINE L1 -2945 3201 2517 1335 248 52 9 chr13 44491110 44491529 -57381640 - L1M4 LINE L1 -1083 5063 4627 2803 157 55 6 chr13 44491553 44492081 -57381088 - L1PA16 LINE L1 -5 6161 5608 11498 236 41 16 chr13 44492094 44495485 -57377684 - L1PA16 LINE L1 -709 5457 1991 1437 256 63 24 chr13 44495490 44495854 -57377315 - L1M4 LINE L1 -1538 4608 4213 1883 154 24 27 chr13 44495854 44496230 -57376939 - THE1C LTR MaLR 0 375 1 1437 256 63 24 chr13 44496230 44496419 -57376750 - L1M4 LINE L1 -1933 4213 4033 495 0 0 0 chr13 44496420 44496475 -57376694 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1745 88 0 0 chr13 44496477 44496694 -57376475 - AluY SINE Alu -28 283 67 13479 180 49 52 chr13 44496708 44497478 -57375691 - L1P4 LINE L1 -430 5731 4960 2001 150 3 3 chr13 44497478 44497784 -57375385 + AluSx SINE Alu 3 308 -4 13479 180 49 52 chr13 44497784 44498291 -57374878 - L1P4 LINE L1 -1201 4960 4453 1101 112 0 0 chr13 44498291 44498443 -57374726 - AluSg/x SINE Alu 0 310 159 13479 180 49 52 chr13 44498443 44500561 -57372608 - L1P4 LINE L1 -1708 4453 2330 2050 148 3 0 chr13 44500561 44500858 -57372311 - AluSx SINE Alu -14 298 1 13479 180 49 52 chr13 44500858 44501077 -57372092 - L1P4 LINE L1 -3831 2330 2112 2108 123 3 3 chr13 44501077 44501379 -57371790 - AluSg SINE Alu -8 302 1 13479 180 49 52 chr13 44501379 44501518 -57371651 - L1P4 LINE L1 -4049 2112 1843 2057 206 18 28 chr13 44501487 44501991 -57371178 - L1PA15-16 LINE L1 -4036 3548 3050 * 5842 144 48 1 chr13 44501999 44502944 -57370225 - L1PA15-16 LINE L1 -4812 2769 1781 3822 193 45 8 chr13 44502940 44504006 -57369163 - L1MB1 LINE L1 -221 5947 4828 * 303 175 0 0 chr13 44504006 44504063 -57369106 + (TA)n Simple_repeat Simple_repeat 1 57 0 491 194 6 144 chr13 44504064 44504124 -57369045 - L1MB1 LINE L1 -1624 4522 4455 2112 138 0 0 chr13 44504124 44504429 -57368740 - AluSx SINE Alu -7 305 1 491 194 6 144 chr13 44504429 44504548 -57368621 - L1MB1 LINE L1 -1691 4455 4368 2165 117 7 0 chr13 44505120 44505429 -57367740 + AluSx SINE Alu 1 311 -1 299 104 0 0 chr13 44505816 44505864 -57367305 + L1MA3 LINE L1 6258 6305 0 22 56 0 0 chr13 44505864 44505900 -57367269 + AT_rich Low_complexity Low_complexity 1 36 0 205 319 67 67 chr13 44506135 44506270 -57366899 - L2 LINE L2 -1 3271 3137 430 299 29 7 chr13 44507074 44507211 -57365958 + MIR SINE MIR 52 191 -71 244 170 91 212 chr13 44508517 44508682 -57364487 - MLT1H LTR MaLR 0 549 405 707 110 0 0 chr13 44509873 44509973 -57363196 + HY3 scRNA scRNA 1 100 -1 316 314 107 0 chr13 44510755 44510876 -57362293 + L3 LINE CR1 1313 1446 -131 249 247 253 32 chr13 44511190 44511344 -57361825 + MIR3 SINE MIR 11 198 -10 363 361 149 26 chr13 44511714 44512063 -57361106 + L2 LINE L2 2843 3234 -38 295 347 49 14 chr13 44512085 44512229 -57360940 + MIR3 SINE MIR 50 198 -10 659 255 59 20 chr13 44512363 44512567 -57360602 - MIR SINE MIR -34 228 17 254 250 0 17 chr13 44514120 44514180 -57358989 + (TG)n Simple_repeat Simple_repeat 2 60 0 2393 84 3 0 chr13 44516051 44516360 -57356809 - AluY SINE Alu -1 310 1 210 143 0 0 chr13 44516782 44516817 -57356352 + (CA)n Simple_repeat Simple_repeat 2 36 0 195 184 0 0 chr13 44516917 44516955 -57356214 + (CATA)n Simple_repeat Simple_repeat 3 40 0 1021 211 116 50 chr13 44516975 44517293 -57355876 - MLT2D LTR ERVL -56 341 3 274 237 0 17 chr13 44517312 44517371 -57355798 - MER69 DNA AcHobo 0 2526 2469 220 340 117 0 chr13 44517642 44517736 -57355433 + L2 LINE L2 3199 3303 -10 473 281 117 67 chr13 44517921 44518341 -57354828 - MLT1J1 LTR MaLR -1 445 5 242 246 98 0 chr13 44518595 44518656 -57354513 - MIR SINE MIR -86 176 110 854 209 211 41 chr13 44519413 44519787 -57353382 - MER69 DNA AcHobo -90 2436 1975 2188 136 0 0 chr13 44519787 44520097 -57353072 - AluSg SINE Alu 0 310 1 854 209 211 41 chr13 44520097 44520162 -57353007 - MER69 DNA AcHobo -551 1975 1922 195 69 0 0 chr13 44520164 44520193 -57352976 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 43275 43 4 2 chr13 44520193 44526299 -57346870 - L1PA3 LINE L1 -13 6142 22 1162 204 111 35 chr13 44526323 44526745 -57346424 - MER69 DNA AcHobo -621 1905 1452 549 322 83 23 chr13 44526735 44526999 -57346170 - MER69 DNA AcHobo -2246 280 1 * 2137 173 75 39 chr13 44527163 44527654 -57345515 - MER67D LTR ERV1 -5 509 1 498 304 47 12 chr13 44527869 44528040 -57345129 - MLT1I LTR MaLR -232 177 1 400 307 73 27 chr13 44528422 44528572 -57344597 + L2 LINE L2 3115 3271 -1 297 331 103 6 chr13 44528595 44528770 -57344399 + L3b LINE CR1 1303 1494 -89 340 352 64 28 chr13 44532043 44532293 -57340876 + MIR SINE MIR 4 262 0 394 224 59 59 chr13 44532533 44532703 -57340466 + MER96B DNA MER1_type? 3 172 -245 4054 35 4 0 chr13 44532827 44533311 -57339858 - L1PA4 LINE L1 -5 6150 5665 5380 222 46 15 chr13 44534321 44536868 -57336301 - L1MD1 LINE L1 -24 6612 3981 599 155 17 0 chr13 44536885 44537001 -57336168 + CT-rich Low_complexity Low_complexity 2 119 0 589 144 0 0 chr13 44537002 44537092 -57336077 - HY4 scRNA scRNA -2 91 2 447 322 25 4 chr13 44537092 44537331 -57335838 - L1MD1 LINE L1 -2572 3968 3725 415 104 0 0 chr13 44537336 44537403 -57335766 - L1MA7 LINE L1 -1 6290 6224 912 200 69 8 chr13 44537408 44537761 -57335408 - L1MD1 LINE L1 -3720 2820 2404 2169 135 3 0 chr13 44537761 44538072 -57335097 - AluJb SINE Alu 0 312 1 912 200 69 8 chr13 44538072 44538208 -57334961 - L1MD1 LINE L1 -4136 2404 2278 1248 201 22 15 chr13 44538208 44538482 -57334687 - AluJo SINE Alu -5 307 32 216 0 0 0 chr13 44538483 44538507 -57334662 + (TATG)n Simple_repeat Simple_repeat 2 25 0 4262 250 65 22 chr13 44538509 44539703 -57333466 - L1MD1 LINE L1 -5283 1257 13 21 0 0 0 chr13 44539844 44539865 -57333304 + AT_rich Low_complexity Low_complexity 1 21 0 320 288 151 20 chr13 44540287 44540433 -57332736 + MIR SINE MIR 72 236 -26 268 182 91 20 chr13 44540467 44540566 -57332603 - L1 LINE L1 -1800 4346 4241 23 0 0 0 chr13 44542282 44542305 -57330864 + AT_rich Low_complexity Low_complexity 1 23 0 351 0 0 0 chr13 44542717 44542756 -57330413 + (TG)n Simple_repeat Simple_repeat 2 40 0 744 58 0 0 chr13 44543269 44543373 -57329796 + AluY SINE Alu 208 311 0 190 330 80 27 chr13 44544274 44544386 -57328783 + L2 LINE L2 2633 2750 -564 379 140 0 0 chr13 44544487 44544544 -57328625 - AluS SINE Alu -15 285 229 22 0 0 0 chr13 44544643 44544665 -57328504 + AT_rich Low_complexity Low_complexity 1 22 0 493 305 69 15 chr13 44544684 44544887 -57328282 - MIR SINE MIR 0 262 49 286 345 97 0 chr13 44544897 44545010 -57328159 + L2 LINE L2 2935 3058 -214 707 247 82 12 chr13 44545205 44545375 -57327794 + MER5A DNA MER1_type 8 189 0 1643 160 16 66 chr13 44545943 44546262 -57326907 - AluJb SINE Alu -9 303 1 43832 43 2 1 chr13 44547500 44553648 -57319521 - L1PA4 LINE L1 -3 6152 1 1572 187 18 4 chr13 44553955 44554233 -57318936 - AluJo SINE Alu -19 293 12 1386 144 148 8 chr13 44554352 44554649 -57318520 + AluSx SINE Alu 1 332 0 201 274 0 0 chr13 44555030 44555081 -57318088 - MIR3 SINE MIR -5 203 153 2693 198 38 47 chr13 44555228 44555886 -57317283 + MER82 DNA MER2_type 2 653 0 235 378 50 25 chr13 44555950 44556151 -57317018 - L3 LINE CR1 -219 1358 1153 680 243 44 56 chr13 44556743 44556994 -57316175 + Charlie8 DNA MER1_type 27 274 -2143 2247 122 3 0 chr13 44557507 44557819 -57315350 - AluSq SINE Alu 0 313 1 203 184 20 20 chr13 44557933 44557982 -57315187 + (CAG)n Simple_repeat Simple_repeat 2 50 0 21 71 0 0 chr13 44558734 44558776 -57314393 + AT_rich Low_complexity Low_complexity 1 42 0 1101 280 51 33 chr13 44558851 44559240 -57313929 - MLT1I LTR MaLR -2 407 12 2184 94 11 0 chr13 44559442 44559780 -57313389 + AluSp SINE Alu 1 341 0 12569 201 58 21 chr13 44560149 44564601 -57308568 - L1MA7 LINE L1 0 7710 3110 3542 258 36 42 chr13 44564600 44566592 -57306577 - L1M2 LINE L1 -4253 2098 247 * 794 225 36 5 chr13 44566596 44566818 -57306351 + L1M3b LINE L1 1273 1501 -4780 818 260 4 50 chr13 44566820 44567062 -57306107 - L1M2 LINE L1 -6043 238 8 25 51 0 0 chr13 44567179 44567218 -57305951 + AT_rich Low_complexity Low_complexity 1 39 0 228 164 36 36 chr13 44567277 44567332 -57305837 - MLT1D LTR MaLR -1 625 571 293 120 0 20 chr13 44567351 44567401 -57305768 - MLT1D LTR MaLR -43 462 414 713 273 20 0 chr13 44567401 44567551 -57305618 + L1M3b LINE L1 428 580 -5701 1591 161 75 42 chr13 44567551 44567886 -57305283 - MLT1D LTR MaLR -91 414 69 1154 246 168 18 chr13 44567934 44568368 -57304801 - MER101B LTR ERV1 -39 531 33 320 95 68 81 chr13 44568405 44568479 -57304690 - MLT1D LTR MaLR -432 73 1 418 336 33 5 chr13 44569823 44569969 -57303200 - MIR SINE MIR -65 143 42 872 233 58 55 chr13 44571302 44571547 -57301622 - MIR SINE MIR -1 261 16 377 276 133 52 chr13 44572018 44572101 -57301068 + MIR SINE MIR 22 97 -165 1970 149 48 25 chr13 44572101 44572457 -57300712 - THE1B LTR MaLR 0 364 1 11036 111 10 1 chr13 44572457 44574023 -57299146 - THE1B-int LTR MaLR 0 1580 1 2242 124 36 17 chr13 44574023 44574379 -57298790 - THE1B LTR MaLR 0 364 2 377 276 133 52 chr13 44574379 44574503 -57298666 + MIR SINE MIR 96 248 -14 194 268 71 0 chr13 44574868 44574924 -57298245 + L2 LINE L2 3213 3272 0 693 261 27 0 chr13 44576351 44576535 -57296634 + MIR SINE MIR 74 262 0 1508 206 50 48 chr13 44576913 44577393 -57295776 + Charlie1b DNA MER1_type 42 522 -1 218 333 32 0 chr13 44577737 44577800 -57295369 - L2 LINE L2 -74 3198 3134 265 237 105 0 chr13 44578204 44578280 -57294889 + MLT1F LTR MaLR 288 371 -171 2198 122 3 0 chr13 44578380 44578684 -57294485 - AluSx SINE Alu -7 305 1 258 206 44 0 chr13 44578803 44578871 -57294298 - MLT1G LTR MaLR -9 581 511 740 277 94 52 chr13 44578881 44579277 -57293892 - HAL1 LINE L1 -1171 1336 899 2021 148 0 0 chr13 44579277 44579574 -57293595 - AluJb SINE Alu -15 297 1 740 277 94 52 chr13 44579574 44579848 -57293321 - HAL1 LINE L1 -1608 899 638 268 281 256 0 chr13 44580753 44580874 -57292295 + L2 LINE L2 3121 3272 0 192 156 0 0 chr13 44581053 44581085 -57292084 - MIR SINE MIR -26 236 205 421 235 0 0 chr13 44581365 44581446 -57291723 + L2 LINE L2 3232 3312 -1 228 299 122 0 chr13 44582285 44582392 -57290777 + L2 LINE L2 3181 3300 -13 19501 182 28 10 chr13 44584370 44585339 -57287830 - L1PA13 LINE L1 -12 6802 5852 207 0 0 0 chr13 44585339 44585362 -57287807 + (TG)n Simple_repeat Simple_repeat 2 24 0 19501 182 28 10 chr13 44585362 44591055 -57282114 - L1PA13 LINE L1 -962 5852 3 204 311 66 0 chr13 44591441 44591502 -57281667 + MIR SINE MIR 91 155 -107 813 235 22 0 chr13 44591504 44591687 -57281482 - MER5A DNA MER1_type 0 189 3 290 282 204 45 chr13 44592438 44592658 -57280511 + MIR SINE MIR 7 261 -1 1726 146 75 39 chr13 44593004 44593366 -57279803 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr13 44594646 44594668 -57278501 + AT_rich Low_complexity Low_complexity 1 22 0 237 98 0 0 chr13 44594757 44594798 -57278371 + (T)n Simple_repeat Simple_repeat 1 41 0 189 345 41 21 chr13 44595417 44595562 -57277607 + MIR SINE MIR 61 208 -54 180 115 0 0 chr13 44595675 44595701 -57277468 + MER5A DNA MER1_type 88 113 -76 1216 265 107 51 chr13 44595817 44596330 -57276839 - MLT1F LTR MaLR 0 542 1 457 209 62 168 chr13 44596412 44596752 -57276417 - MLT1F-int LTR MaLR -107 1264 961 22 35 0 0 chr13 44597347 44597376 -57275793 + AT_rich Low_complexity Low_complexity 1 29 0 2023 115 7 36 chr13 44597430 44597735 -57275434 + AluSx SINE Alu 1 296 -16 276 330 121 33 chr13 44598271 44598544 -57274625 + L2 LINE L2 2677 2973 -341 183 306 235 0 chr13 44598706 44598791 -57274378 + L2 LINE L2 3209 3313 0 2143 139 14 25 chr13 44598853 44599221 -57273948 + THE1B LTR MaLR 1 364 0 767 277 68 0 chr13 44599239 44599474 -57273695 + MIR SINE MIR 9 259 -3 271 298 149 0 chr13 44599642 44599736 -57273433 + L2 LINE L2 3200 3307 -6 407 281 54 27 chr13 44601168 44601353 -57271816 + MIR SINE MIR 8 197 -65 322 301 88 9 chr13 44601818 44601931 -57271238 + MIR SINE MIR 53 174 -88 599 196 11 95 chr13 44602163 44602342 -57270827 - MER103 DNA DNA -1 165 2 1478 162 18 128 chr13 44602678 44603067 -57270102 + MER7A DNA MER2_type 1 344 -2 704 200 0 8 chr13 44603268 44603398 -57269771 + AluJo SINE Alu 6 134 -178 406 171 0 26 chr13 44603435 44603511 -57269658 + AluJo SINE Alu 138 211 -101 1803 196 31 58 chr13 44604729 44605209 -57267960 - MLT1C LTR MaLR 0 467 1 340 248 16 11 chr13 44605404 44605538 -57267631 - MER5B DNA MER1_type 0 178 2 216 184 0 0 chr13 44606180 44606229 -57266940 + (TG)n Simple_repeat Simple_repeat 2 50 0 383 342 0 0 chr13 44607230 44607350 -57265819 + L2 LINE L2 3193 3312 -1 186 43 0 0 chr13 44607772 44607795 -57265374 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr13 44609342 44609371 -57263798 + AT_rich Low_complexity Low_complexity 1 29 0 677 305 88 63 chr13 44609729 44610172 -57262997 - L2 LINE L2 -1 3312 2859 1337 57 0 0 chr13 44610194 44610352 -57262817 + AluY SINE Alu 130 287 -24 301 68 0 34 chr13 44610359 44610418 -57262751 + (CAAAAA)n Simple_repeat Simple_repeat 5 61 0 2346 261 100 58 chr13 44610430 44611409 -57261760 - L2 LINE L2 -509 2805 1786 21 0 0 0 chr13 44611605 44611626 -57261543 + AT_rich Low_complexity Low_complexity 1 21 0 183 304 51 13 chr13 44611628 44611707 -57261462 - L3 LINE CR1 -2 1575 1494 24 32 0 0 chr13 44612243 44612274 -57260895 + AT_rich Low_complexity Low_complexity 1 31 0 387 322 126 26 chr13 44612891 44613239 -57259930 + L1MEc LINE L1 23 405 -5991 1143 225 36 30 chr13 44613697 44614157 -57259012 + L1ME1 LINE L1 5328 5868 -298 312 301 59 22 chr13 44614348 44614484 -57258685 + L1MEc LINE L1 288 428 -5968 777 220 29 103 chr13 44614640 44614990 -57258179 + L1MEc LINE L1 1579 1902 -4494 766 214 61 61 chr13 44615002 44615231 -57257938 + LTR68 LTR ERV1 3 231 -509 2639 58 0 0 chr13 44615232 44615543 -57257626 + AluY SINE Alu 1 311 0 261 241 0 0 chr13 44615659 44615717 -57257452 + L1ME3 LINE L1 6104 6161 -1 2416 93 3 0 chr13 44616184 44616495 -57256674 - AluSp SINE Alu -1 312 1 231 328 115 0 chr13 44617206 44617328 -57255841 + L2 LINE L2 3137 3272 0 497 293 146 5 chr13 44618345 44618550 -57254619 + MIR SINE MIR 19 252 -10 1155 244 164 15 chr13 44619538 44619940 -57253229 - LTR16B LTR ERVL -1 463 2 207 340 125 20 chr13 44620031 44620231 -57252938 - MIR SINE MIR -10 252 32 16880 130 11 73 chr13 44620339 44623948 -57249221 + L1PA7 LINE L1 8 3636 -2825 13755 104 29 0 chr13 44624559 44627350 -57245819 + L1PA7 LINE L1 3635 6469 0 1416 149 41 2 chr13 44628114 44628546 -57244623 + L1MA7 LINE L1 5783 6291 0 21 36 0 0 chr13 44629104 44629132 -57244037 + AT_rich Low_complexity Low_complexity 1 28 0 796 281 114 32 chr13 44630314 44630478 -57242691 + Tigger8 DNA MER2_type 145 294 -372 2447 75 0 3 chr13 44630478 44630784 -57242385 + AluY SINE Alu 1 305 -6 796 281 114 32 chr13 44630784 44631050 -57242119 + Tigger8 DNA MER2_type 294 610 -56 190 316 0 0 chr13 44631132 44631189 -57241980 + L2 LINE L2 3216 3272 0 300 265 211 61 chr13 44632271 44632418 -57240751 - MIR3 SINE MIR -11 197 29 237 229 0 0 chr13 44632698 44632746 -57240423 - L2 LINE L2 -4 3268 3221 231 346 10 20 chr13 44634271 44634372 -57238797 + MIR SINE MIR 45 144 -64 213 281 146 11 chr13 44634532 44634621 -57238548 - MER5A DNA MER1_type -45 144 44 22 35 0 0 chr13 44636307 44636336 -57236833 + AT_rich Low_complexity Low_complexity 1 29 0 270 360 111 34 chr13 44636662 44637076 -57236093 + L2 LINE L2 1993 2438 -876 228 363 49 10 chr13 44637566 44637668 -57235501 + L2 LINE L2 3204 3309 -4 238 365 52 0 chr13 44637909 44638005 -57235164 - L2 LINE L2 -5 3267 3167 1176 212 20 115 chr13 44638010 44638411 -57234758 - MLT1A1 LTR MaLR 0 365 3 6647 223 94 26 chr13 44638420 44640027 -57233142 - MLT1A1-int LTR MaLR -7 1728 13 1041 180 62 117 chr13 44640029 44640414 -57232755 - MLT1A1 LTR MaLR -1 504 1 212 185 56 0 chr13 44640920 44640974 -57232195 + MIR3 SINE MIR 150 206 -2 1387 154 13 0 chr13 44641056 44641289 -57231880 - L1PA16 LINE L1 -9 6157 5922 209 241 35 46 chr13 44643127 44643214 -57229955 + L2 LINE L2 3182 3267 -46 641 289 77 52 chr13 44643679 44644155 -57229014 - L2 LINE L2 -109 3204 2731 1312 289 94 22 chr13 44645083 44645626 -57227543 - L3 LINE CR1 -265 1312 731 431 282 65 8 chr13 44645819 44645943 -57227226 - L2 LINE L2 0 3313 3183 799 240 98 54 chr13 44646040 44646446 -57226723 - MLT2B1 LTR ERVL -8 512 80 22 56 0 0 chr13 44647429 44647465 -57225704 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr13 44647516 44647550 -57225619 + AT_rich Low_complexity Low_complexity 1 34 0 1835 118 16 51 chr13 44647611 44647924 -57225245 - AluSx SINE Alu -10 302 1 206 365 76 21 chr13 44648349 44648494 -57224675 + MIR SINE MIR 56 208 -54 246 309 21 10 chr13 44648596 44648693 -57224476 + MIR SINE MIR 57 154 -108 1388 239 59 0 chr13 44648702 44649008 -57224161 + MLT2B1 LTR ERVL 3 326 -194 380 119 30 0 chr13 44649030 44649097 -57224072 + (TATG)n Simple_repeat Simple_repeat 2 70 0 183 80 0 0 chr13 44649097 44649122 -57224047 + (CA)n Simple_repeat Simple_repeat 2 26 0 376 56 0 19 chr13 44649124 44649178 -57223991 + MLT2B1 LTR ERVL 464 516 -4 265 354 68 37 chr13 44649454 44649699 -57223470 + L3 LINE CR1 888 1124 -453 716 220 44 0 chr13 44649699 44649858 -57223311 + FRAM SINE Alu 1 166 0 731 171 95 57 chr13 44649868 44650078 -57223091 - MER20 DNA MER1_type -1 218 1 265 354 68 37 chr13 44650078 44650143 -57223026 + L3 LINE CR1 1132 1219 -358 312 225 29 116 chr13 44650406 44650544 -57222625 + L3 LINE CR1 1257 1382 -195 1132 184 67 0 chr13 44650638 44650877 -57222292 - Tigger2 DNA MER2_type -1 2717 2463 3947 151 32 1 chr13 44650933 44651595 -57221574 - Tigger2 DNA MER2_type -1970 748 67 39 50 0 0 chr13 44651595 44651655 -57221514 + AT_rich Low_complexity Low_complexity 1 60 0 381 206 14 0 chr13 44651655 44651728 -57221441 - Tigger2 DNA MER2_type -2644 74 1 462 258 40 0 chr13 44651992 44652116 -57221053 - MIR SINE MIR -10 252 124 328 270 107 56 chr13 44652709 44652942 -57220227 + L3b LINE CR1 1203 1447 -136 28 29 0 0 chr13 44653050 44653085 -57220084 + AT_rich Low_complexity Low_complexity 1 35 0 1050 122 39 6 chr13 44653253 44653434 -57219735 + MER53 DNA DNA 1 187 -2 469 267 79 24 chr13 44653456 44653621 -57219548 + MER69A DNA AcHobo 4 177 0 322 182 0 0 chr13 44654379 44654434 -57218735 - L2 LINE L2 -4 3268 3214 484 71 0 71 chr13 44654498 44654582 -57218587 - L1PA5 LINE L1 0 6154 6077 7227 31 1 0 chr13 44654688 44655967 -57217202 - L1PA4 LINE L1 -54 6101 4822 5880 30 0 0 chr13 44655965 44656689 -57216480 - L1PA4 LINE L1 -2952 3194 2471 * 412 319 93 20 chr13 44657686 44657890 -57215279 - MIR SINE MIR -5 257 39 1729 154 39 39 chr13 44661332 44661663 -57211506 - MER21B LTR ERV1 -22 841 511 2413 209 121 23 chr13 44661669 44662329 -57210840 + MER50 LTR ERV1 10 734 0 * 2887 185 52 0 chr13 44662329 44662818 -57210351 - MER21B LTR ERV1 -348 515 1 27 0 0 0 chr13 44662896 44662923 -57210246 + AT_rich Low_complexity Low_complexity 1 27 0 303 313 115 33 chr13 44662969 44663151 -57210018 + MIR SINE MIR 60 256 -6 2226 150 57 27 chr13 44663776 44664182 -57208987 + MSTB LTR MaLR 1 418 -8 459 167 33 11 chr13 44664200 44664290 -57208879 + MSTA LTR MaLR 332 423 -5 1077 302 112 48 chr13 44665662 44666420 -57206749 - L2 LINE L2 -9 3304 2463 189 74 0 0 chr13 44666420 44666447 -57206722 + (TG)n Simple_repeat Simple_repeat 2 28 0 1077 302 112 48 chr13 44666447 44666773 -57206396 - L2 LINE L2 -850 2463 2159 192 125 0 0 chr13 44666786 44666818 -57206351 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr13 44666860 44666882 -57206287 + AT_rich Low_complexity Low_complexity 1 22 0 2242 177 22 29 chr13 44666891 44667344 -57205825 - L1PB4 LINE L1 0 6156 5707 226 313 45 62 chr13 44667345 44667524 -57205645 - L2 LINE L2 -1192 2122 1947 1558 136 8 8 chr13 44667543 44667808 -57205361 - L1M1 LINE L1 -647 5653 5389 1004 215 64 43 chr13 44668165 44668591 -57204578 - HsTC2 DNA Tc2 -2 1896 1271 937 253 30 0 chr13 44668587 44668824 -57204345 - HsTC2 DNA Tc2 -1153 745 502 * 650 228 119 26 chr13 44668820 44669013 -57204156 - HsTC2 DNA Tc2 -1686 212 2 * 25 31 0 0 chr13 44669154 44669186 -57203983 + AT_rich Low_complexity Low_complexity 1 32 0 262 253 58 11 chr13 44669188 44669275 -57203894 + MLT1J LTR MaLR 82 172 -339 234 337 54 0 chr13 44669372 44669464 -57203705 + MLT1L LTR MaLR 348 444 -171 787 177 30 101 chr13 44669494 44669586 -57203583 + AluSg SINE Alu 49 121 -189 240 35 0 0 chr13 44669586 44669615 -57203554 + (TA)n Simple_repeat Simple_repeat 2 30 0 787 177 30 101 chr13 44669615 44669720 -57203449 + AluSg SINE Alu 121 232 -78 374 175 82 10 chr13 44669747 44669844 -57203325 + MLT1J LTR MaLR 389 492 -19 470 184 18 44 chr13 44670290 44670404 -57202765 + MSTD LTR MaLR 1 111 -285 * 744 183 5 45 chr13 44670380 44670538 -57202631 + MSTD LTR MaLR 261 396 0 39 22 0 0 chr13 44671236 44671282 -57201887 + AT_rich Low_complexity Low_complexity 1 46 0 279 79 0 0 chr13 44671743 44671781 -57201388 + (TC)n Simple_repeat Simple_repeat 1 38 0 2252 102 3 0 chr13 44671797 44672091 -57201078 + AluSq SINE Alu 1 295 -18 1215 209 106 14 chr13 44673285 44673701 -57199468 - Charlie2 DNA MER1_type -122 2740 2287 27 29 0 0 chr13 44673704 44673738 -57199431 + AT_rich Low_complexity Low_complexity 1 34 0 253 177 129 0 chr13 44673752 44673814 -57199355 - Charlie2 DNA MER1_type -685 2177 2108 603 235 37 32 chr13 44673844 44674031 -57199138 - Charlie2 DNA MER1_type -818 2044 1857 469 282 97 60 chr13 44674050 44674298 -57198871 - Charlie2 DNA MER1_type -2560 302 46 513 236 286 0 chr13 44674633 44674874 -57198295 - L1MC4 LINE L1 -761 7281 6972 1053 265 103 27 chr13 44674992 44675438 -57197731 + HAL1b LINE L1 62 541 -807 1620 235 136 20 chr13 44675553 44676187 -57196982 + L1MC4a LINE L1 5268 5974 -1834 21 57 0 0 chr13 44677534 44677569 -57195600 + AT_rich Low_complexity Low_complexity 1 35 0 1683 184 86 0 chr13 44677741 44678077 -57195092 + MLT1A1 LTR MaLR 1 365 0 1751 228 68 51 chr13 44678604 44678767 -57194402 + MLT2B3 LTR ERVL 1 160 -394 207 0 0 0 chr13 44678767 44678790 -57194379 + (CTAGGG)n Simple_repeat Simple_repeat 3 25 0 1751 228 68 51 chr13 44678790 44679171 -57193998 + MLT2B3 LTR ERVL 160 554 0 255 254 14 14 chr13 44679750 44679821 -57193348 + MIR SINE MIR 25 95 -167 8616 163 27 11 chr13 44680735 44680892 -57192277 - L1MA6 LINE L1 -5 6295 6142 2571 108 16 8 chr13 44680892 44681264 -57191905 + THE1C LTR MaLR 1 375 0 8616 163 27 11 chr13 44681264 44683710 -57189459 - L1MA6 LINE L1 -158 6142 3646 2176 110 0 0 chr13 44684484 44684796 -57188373 - AluSq SINE Alu 0 312 1 228 253 0 0 chr13 44685060 44685135 -57188034 + CT-rich Low_complexity Low_complexity 2 76 0 2327 237 19 10 chr13 44685386 44686011 -57187158 + L1M4 LINE L1 3889 4519 -1627 493 255 32 10 chr13 44686012 44686190 -57186979 + L1MA10 LINE L1 5976 6319 -9 391 320 65 30 chr13 44686216 44686416 -57186753 + MER110 LTR ERV1 273 479 -12 528 261 28 33 chr13 44686440 44686620 -57186549 - MER58A DNA MER1_type -9 215 37 323 278 43 53 chr13 44686781 44686968 -57186201 - L1M4 LINE L1 -1100 5046 4862 1243 126 25 46 chr13 44686981 44687219 -57185950 + MER50 LTR ERV1 1 233 -501 * 1521 147 49 28 chr13 44687208 44687494 -57185675 + MER50 LTR ERV1 433 724 -10 326 273 93 44 chr13 44687680 44688004 -57185165 - L1M4 LINE L1 -1746 4400 4050 300 270 14 0 chr13 44688070 44688144 -57185025 + L1MC4 LINE L1 6649 6723 -1319 258 326 60 46 chr13 44688505 44689118 -57184051 - L1M4 LINE L1 -1922 4224 3603 21 0 0 0 chr13 44689185 44689206 -57183963 + AT_rich Low_complexity Low_complexity 1 21 0 42 36 0 0 chr13 44689768 44689824 -57183345 + AT_rich Low_complexity Low_complexity 1 56 0 6208 148 28 8 chr13 44690801 44692043 -57181126 + THE1C-int LTR MaLR 69 1353 -227 362 125 0 16 chr13 44692033 44692097 -57181072 + THE1C-int LTR MaLR 1517 1579 -1 * 2210 107 37 45 chr13 44692097 44692471 -57180698 + THE1C LTR MaLR 5 375 0 324 0 0 0 chr13 44692472 44692508 -57180661 + (TC)n Simple_repeat Simple_repeat 2 37 0 * 345 47 0 0 chr13 44692507 44692550 -57180619 + (TA)n Simple_repeat Simple_repeat 2 44 0 565 199 146 33 chr13 44693553 44693704 -57179465 + MER67D LTR ERV1 1 168 -346 * 1432 164 16 8 chr13 44693679 44693935 -57179234 - Tigger2 DNA MER2_type -10 2708 2451 4157 149 45 8 chr13 44694001 44694719 -57178450 - Tigger2 DNA MER2_type -1974 744 1 778 184 56 93 chr13 44694721 44695138 -57178031 + MER67D LTR ERV1 144 510 -4 492 250 47 66 chr13 44695207 44695549 -57177620 - LTR35 LTR ERV1 0 677 350 216 244 0 0 chr13 44695907 44695948 -57177221 - L2 LINE L2 -212 3060 3020 883 310 0 16 chr13 44696068 44696310 -57176859 - MIR SINE MIR -9 253 16 22 35 0 0 chr13 44696545 44696574 -57176595 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr13 44697234 44697268 -57175901 + (TG)n Simple_repeat Simple_repeat 2 35 0 376 261 81 0 chr13 44697321 44697432 -57175737 + MER5B DNA MER1_type 1 120 -58 753 226 0 0 chr13 44697708 44697885 -57175284 + (TA)n Simple_repeat Simple_repeat 2 178 0 317 322 0 0 chr13 44697905 44697995 -57175174 - L1MC4 LINE L1 -1339 6703 6614 316 296 23 0 chr13 44697925 44698013 -57175156 + L1MC4 LINE L1 6614 6703 -1339 * 305 333 0 0 chr13 44698013 44698103 -57175066 + L1MC4 LINE L1 6614 6703 -1339 304 296 23 0 chr13 44698027 44698115 -57175054 - L1MC4 LINE L1 -1339 6703 6614 * 318 322 0 0 chr13 44698117 44698207 -57174962 - L1MC4 LINE L1 -1339 6703 6614 308 277 0 43 chr13 44698137 44698231 -57174938 + L1MC4 LINE L1 6614 6703 -1339 * 641 242 0 11 chr13 44698254 44698436 -57174733 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 186 255 0 0 chr13 44698444 44698495 -57174674 + (TA)n Simple_repeat Simple_repeat 2 52 0 * 591 272 0 0 chr13 44698488 44698668 -57174501 + (TG)n Simple_repeat Simple_repeat 1 180 0 636 208 35 0 chr13 44698696 44698869 -57174300 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2319 156 12 0 chr13 44698871 44699282 -57173887 + L1MA5A LINE L1 5876 6291 -6 1503 245 32 22 chr13 44699510 44700131 -57173038 + L1M4 LINE L1 2734 3360 -2786 342 145 32 0 chr13 44700132 44700194 -57172975 + L1MB8 LINE L1 5423 5486 -694 24 0 0 0 chr13 44700340 44700364 -57172805 + AT_rich Low_complexity Low_complexity 1 24 0 2743 188 36 17 chr13 44700366 44700592 -57172577 + L1MB8 LINE L1 5520 5740 -438 2168 119 36 30 chr13 44700592 44700954 -57172215 - THE1B LTR MaLR 0 364 1 10635 107 34 0 chr13 44700954 44702482 -57170687 - THE1B-int LTR MaLR 0 1580 1 1879 160 36 30 chr13 44702482 44702844 -57170325 - THE1B LTR MaLR 0 364 1 2743 188 36 17 chr13 44702844 44703249 -57169920 + L1MB8 LINE L1 5739 6165 -13 27 0 0 0 chr13 44703322 44703349 -57169820 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr13 44704216 44704255 -57168914 + AT_rich Low_complexity Low_complexity 1 39 0 492 357 18 22 chr13 44704380 44704604 -57168565 - MIR SINE MIR -22 240 18 219 388 66 44 chr13 44704606 44704833 -57168336 + L2 LINE L2 2868 3099 -173 2762 13 0 6 chr13 44707342 44707657 -57165512 - AluYb8 SINE Alu -5 313 1 565 306 94 0 chr13 44708602 44708782 -57164387 + MIR SINE MIR 53 249 -13 6735 178 43 16 chr13 44708786 44709848 -57163321 - L1M3 LINE L1 -735 5433 4313 1478 212 7 7 chr13 44709848 44710136 -57163033 + AluJb SINE Alu 7 294 -18 6735 178 43 16 chr13 44710136 44710552 -57162617 - L1M3 LINE L1 -1855 4313 3910 647 305 50 11 chr13 44711707 44711971 -57161198 + MER110A LTR ERV1 213 470 -12 24 0 0 0 chr13 44712504 44712528 -57160641 + AT_rich Low_complexity Low_complexity 1 24 0 243 363 106 12 chr13 44712901 44713061 -57160108 + L2 LINE L2 3094 3268 -4 3091 140 38 25 chr13 44714444 44715080 -57158089 - L1MA8 LINE L1 0 6291 5648 2086 82 24 5 chr13 44715085 44715435 -57157734 - MLT2A1 LTR ERVL -7 437 1 387 127 0 0 chr13 44715435 44715498 -57157671 + (TA)n Simple_repeat Simple_repeat 1 63 0 617 172 38 0 chr13 44715599 44715756 -57157413 + GA-rich Low_complexity Low_complexity 1 163 0 540 183 41 15 chr13 44715781 44716035 -57157134 + GA-rich Low_complexity Low_complexity 1 260 0 461 229 11 28 chr13 44716010 44716189 -57156980 + A-rich Low_complexity Low_complexity 5 180 0 * 10506 66 15 39 chr13 44716210 44717878 -57155291 - L1MA8 LINE L1 -678 5634 3987 1470 157 46 130 chr13 44717978 44718485 -57154684 - L1M2 LINE L1 -690 5622 5138 450 85 24 12 chr13 44718485 44718567 -57154602 + (TA)n Simple_repeat Simple_repeat 2 84 0 206 307 147 20 chr13 44719423 44719573 -57153596 + MIR SINE MIR 79 247 -15 21 36 0 0 chr13 44719765 44719793 -57153376 + AT_rich Low_complexity Low_complexity 1 28 0 906 123 23 41 chr13 44719793 44719964 -57153205 - L1MA3 LINE L1 -6 7718 7551 5268 151 6 4 chr13 44719967 44721456 -57151713 - L1MA3 LINE L1 -249 7475 5985 21188 165 31 20 chr13 44721459 44721715 -57151454 - L1MA3 LINE L1 -2148 5417 5165 2185 102 7 0 chr13 44721715 44722010 -57151159 - AluY SINE Alu -10 301 5 21188 165 31 20 chr13 44722010 44723614 -57149555 - L1MA3 LINE L1 -2400 5165 3580 2036 115 0 11 chr13 44723614 44723930 -57149239 - AluSq SINE Alu 0 313 1 21188 165 31 20 chr13 44723930 44727314 -57145855 - L1MA3 LINE L1 -3985 3580 102 456 19 0 0 chr13 44727314 44727367 -57145802 + (TG)n Simple_repeat Simple_repeat 2 54 0 21188 165 31 20 chr13 44727367 44727457 -57145712 - L1MA3 LINE L1 -7463 102 14 198 103 0 0 chr13 44728252 44728281 -57144888 + (CA)n Simple_repeat Simple_repeat 2 30 0 1780 186 11 39 chr13 44728345 44728706 -57144463 + MSTB LTR MaLR 1 351 -75 7876 187 19 54 chr13 44728768 44729737 -57143432 + THE1B-int LTR MaLR 1 1003 -648 1855 143 92 15 chr13 44729737 44730073 -57143096 + THE1B LTR MaLR 1 362 -2 11095 97 23 5 chr13 44730075 44731627 -57141542 + THE1B-int LTR MaLR 1 1580 0 1967 157 76 15 chr13 44731627 44731970 -57141199 + THE1B LTR MaLR 1 364 0 7876 187 19 54 chr13 44731970 44732708 -57140461 + THE1B-int LTR MaLR 1002 1651 0 2195 199 17 15 chr13 44732711 44733118 -57140051 + MSTB LTR MaLR 4 411 -15 183 100 0 0 chr13 44734353 44734383 -57138786 + (TG)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr13 44734701 44734725 -57138444 + AT_rich Low_complexity Low_complexity 1 24 0 1446 240 83 14 chr13 44735168 44735589 -57137580 - LTR40b LTR ERVL 0 462 13 406 352 158 26 chr13 44735716 44737003 -57136166 + L2 LINE L2 1799 3257 -15 273 57 0 0 chr13 44737004 44737039 -57136130 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 231 140 0 80 chr13 44737245 44737295 -57135874 + L2 LINE L2 3227 3272 0 200 35 35 0 chr13 44737993 44738022 -57135147 + (TC)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr13 44738022 44738045 -57135124 + AT_rich Low_complexity Low_complexity 1 23 0 769 203 94 0 chr13 44738849 44739041 -57134128 + L1MB1 LINE L1 5954 6163 -5 528 340 36 12 chr13 44739223 44739476 -57133693 - L2 LINE L2 -1272 2042 1784 1759 161 20 10 chr13 44740018 44740310 -57132859 - AluJo SINE Alu -17 295 1 357 287 70 21 chr13 44741471 44741614 -57131555 - L2 LINE L2 -2 3311 3162 317 399 10 10 chr13 44741634 44741832 -57131337 - L2 LINE L2 -471 2843 2646 199 140 0 70 chr13 44741941 44741998 -57131171 + (CATA)n Simple_repeat Simple_repeat 3 55 0 * 603 268 0 0 chr13 44741986 44742165 -57131004 + (CA)n Simple_repeat Simple_repeat 2 180 0 576 266 0 0 chr13 44742134 44742303 -57130866 + (TA)n Simple_repeat Simple_repeat 2 170 0 * 303 333 0 0 chr13 44742306 44742396 -57130773 + L1MC4 LINE L1 6614 6703 -1339 * 309 326 0 0 chr13 44742393 44742482 -57130687 - L1MC4 LINE L1 -1340 6702 6614 633 230 0 0 chr13 44742492 44742644 -57130525 + (TA)n Simple_repeat Simple_repeat 2 153 0 303 333 0 0 chr13 44742644 44742734 -57130435 + L1MC4 LINE L1 6614 6703 -1339 328 273 23 0 chr13 44742736 44742824 -57130345 + L1MC4 LINE L1 6614 6703 -1339 305 326 0 0 chr13 44742745 44742834 -57130335 - L1MC4 LINE L1 -1340 6702 6614 * 186 267 107 53 chr13 44743097 44743228 -57129941 + MER5B DNA MER1_type 41 178 0 216 0 0 0 chr13 44743281 44743305 -57129864 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr13 44743965 44743994 -57129175 + AT_rich Low_complexity Low_complexity 1 29 0 862 314 0 16 chr13 44744230 44744472 -57128697 + MIR SINE MIR 16 253 -9 215 244 0 0 chr13 44744592 44744633 -57128536 + L2 LINE L2 3020 3060 -212 21 36 0 0 chr13 44745177 44745205 -57127964 + AT_rich Low_complexity Low_complexity 1 28 0 206 121 0 0 chr13 44745240 44745273 -57127896 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 80 0 0 chr13 44746314 44746364 -57126805 + AT_rich Low_complexity Low_complexity 1 50 0 1416 152 158 13 chr13 44746372 44746675 -57126494 - MSTA LTR MaLR -81 347 1 1108 304 93 42 chr13 44746678 44747538 -57125631 + L1MEc LINE L1 71 974 -5422 796 283 108 22 chr13 44747539 44748130 -57125039 + L1MEc LINE L1 1014 1655 -4741 2520 120 17 15 chr13 44748421 44748828 -57124341 - LTR49 LTR ERV1 -4 591 184 569 214 135 26 chr13 44748828 44749020 -57124149 + MLT2C1 LTR ERVL 19 231 -166 292 281 138 31 chr13 44749069 44749229 -57123940 + MIR SINE MIR 56 232 -30 437 189 111 0 chr13 44749229 44749319 -57123850 - Tigger2 DNA MER2_type 0 2718 2619 2739 73 98 5 chr13 44749321 44749731 -57123438 - LTR7 LTR ERV1 -2 448 1 2339 103 45 16 chr13 44749731 44750110 -57123059 - HERVH LTR ERV1 0 7713 7324 1368 122 33 0 chr13 44750110 44750323 -57122846 - HERVH LTR ERV1 -1894 5819 5600 4335 141 8 1 chr13 44750324 44750982 -57122187 - HERVH LTR ERV1 -2564 5149 4488 9206 93 4 10 chr13 44750984 44752316 -57120853 - HERVH LTR ERV1 -3720 3993 2670 998 112 0 0 chr13 44752416 44752550 -57120619 + AluSc SINE Alu 165 298 -11 264 224 0 0 chr13 44753410 44753468 -57119701 - MLT1G LTR MaLR -16 574 517 2018 205 66 45 chr13 44753471 44754003 -57119166 - LTR55 LTR ERV -5 543 1 323 283 35 55 chr13 44754003 44754148 -57119021 - MLT1G LTR MaLR -69 521 380 654 261 94 50 chr13 44754149 44754551 -57118618 - MLT1G LTR MaLR -144 446 24 21 0 0 0 chr13 44755543 44755564 -57117605 + AT_rich Low_complexity Low_complexity 1 21 0 326 305 68 0 chr13 44755989 44756107 -57117062 + MIR SINE MIR 68 193 -69 408 148 12 12 chr13 44757139 44757220 -57115949 - MER5A DNA MER1_type -96 93 13 646 198 28 51 chr13 44757243 44757420 -57115749 - MER5B DNA MER1_type -4 174 2 195 129 0 0 chr13 44757433 44757464 -57115705 + (TG)n Simple_repeat Simple_repeat 2 32 0 817 232 6 6 chr13 44757887 44758055 -57115114 - MER97a DNA MER1_type? -716 178 11 226 233 95 9 chr13 44758263 44758379 -57114790 - L1M LINE L1 -873 5427 5302 1426 209 3 19 chr13 44758380 44758741 -57114428 - AluJb SINE Alu 0 312 1 415 205 8 31 chr13 44758754 44758881 -57114288 - L1MA9 LINE L1 -25 6287 6164 4125 194 27 14 chr13 44759004 44760403 -57112766 - L1MA9 LINE L1 -495 5817 4399 800 204 25 0 chr13 44760468 44760625 -57112544 + MER6B DNA MER2_type 1 161 -49 3612 175 20 23 chr13 44761272 44761979 -57111190 + MER39 LTR ERV1 3 707 0 213 128 0 26 chr13 44762784 44762823 -57110346 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 3074 159 113 50 chr13 44763824 44764222 -57108947 + MER39 LTR ERV1 1 372 -335 2009 115 68 74 chr13 44764222 44764548 -57108621 + THE1B LTR MaLR 1 326 -38 2133 125 3 0 chr13 44764548 44764859 -57108310 - AluSx SINE Alu 0 312 1 2009 115 68 74 chr13 44764859 44764898 -57108271 + THE1B LTR MaLR 326 364 0 11411 105 3 3 chr13 44764898 44766478 -57106691 + THE1B-int LTR MaLR 1 1580 0 1852 152 84 26 chr13 44766478 44766821 -57106348 + THE1B LTR MaLR 1 363 -1 3074 159 113 50 chr13 44766821 44767085 -57106084 + MER39 LTR ERV1 371 707 0 22 35 0 0 chr13 44767910 44767939 -57105230 + AT_rich Low_complexity Low_complexity 1 29 0 1138 226 91 36 chr13 44768360 44768855 -57104314 - MER69 DNA AcHobo 0 2526 2005 * 1522 226 174 18 chr13 44768844 44769339 -57103830 - MER69 DNA AcHobo -1954 572 1 1841 148 0 40 chr13 44769376 44769674 -57103495 + AluSx SINE Alu 1 286 -26 318 341 73 16 chr13 44770703 44770826 -57102343 + L2 LINE L2 3141 3270 -2 222 163 41 0 chr13 44771922 44771971 -57101198 + (CTTTA)n Simple_repeat Simple_repeat 3 53 0 1340 246 7 7 chr13 44772004 44772293 -57100876 + AluJo SINE Alu 1 289 -23 534 314 62 16 chr13 44772725 44772919 -57100250 + MIR SINE MIR 46 248 -14 26 30 0 0 chr13 44772928 44772961 -57100208 + AT_rich Low_complexity Low_complexity 1 33 0 548 343 133 31 chr13 44773268 44773839 -57099330 + L2 LINE L2 2092 2720 -594 2476 193 50 31 chr13 44773900 44774405 -57098764 + MLT2B3 LTR ERVL 1 518 -36 441 55 41 0 chr13 44774405 44774478 -57098691 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2476 193 50 31 chr13 44774478 44774516 -57098653 + MLT2B3 LTR ERVL 518 554 0 757 332 24 27 chr13 44774522 44774853 -57098316 - MER115 DNA AcHobo -271 422 93 313 243 14 0 chr13 44775057 44775131 -57098038 - MIR SINE MIR -120 142 68 2547 52 0 0 chr13 44775323 44775628 -57097541 - AluY SINE Alu -6 305 1 1852 119 3 99 chr13 44775914 44776257 -57096912 - AluSx SINE Alu -2 310 1 210 71 0 0 chr13 44776416 44776444 -57096725 + (CA)n Simple_repeat Simple_repeat 1 28 0 2139 118 0 7 chr13 44776702 44776998 -57096171 + AluSx SINE Alu 1 294 -18 2490 148 14 23 chr13 44777198 44777636 -57095533 - Tigger2a DNA MER2_type 0 434 1 372 379 40 0 chr13 44777844 44778021 -57095148 - MIR SINE MIR -74 188 5 347 340 149 0 chr13 44778904 44779045 -57094124 - L2 LINE L2 -3 3269 3108 2287 193 19 24 chr13 44779703 44780169 -57093000 - MER88 LTR ERVL 0 464 1 198 316 92 40 chr13 44780565 44780641 -57092528 - L2 LINE L2 -54 3218 3139 239 309 96 44 chr13 44781143 44781551 -57091618 + L1ME LINE L1 5377 5805 -316 2155 36 44 11 chr13 44781602 44781912 -57091257 + AluY SINE Alu 1 319 0 22 56 0 0 chr13 44782544 44782580 -57090589 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr13 44782870 44782895 -57090274 + AT_rich Low_complexity Low_complexity 1 25 0 680 268 50 50 chr13 44783235 44783474 -57089695 + MIR SINE MIR 24 262 0 808 281 164 19 chr13 44784171 44784224 -57088945 - L2 LINE L2 -1101 2213 2169 2446 50 3 0 chr13 44784224 44784527 -57088642 + AluY SINE Alu 1 304 -7 808 281 164 19 chr13 44784527 44784996 -57088173 - L2 LINE L2 -1145 2169 1615 21 0 0 0 chr13 44786224 44786245 -57086924 + AT_rich Low_complexity Low_complexity 1 21 0 195 162 0 0 chr13 44787124 44787161 -57086008 + (CA)n Simple_repeat Simple_repeat 1 37 0 254 218 327 45 chr13 44788373 44788483 -57084686 + MER5A DNA MER1_type 49 189 0 1394 326 74 33 chr13 44788653 44789643 -57083526 + L2 LINE L2 1959 2986 -327 410 201 0 21 chr13 44789643 44789787 -57083382 + (CA)n Simple_repeat Simple_repeat 1 141 0 3063 176 23 32 chr13 44789950 44790615 -57082554 - L1PB4 LINE L1 -1411 4735 4077 4295 183 54 5 chr13 44790617 44791143 -57082026 + L1PB4 LINE L1 4764 5263 -893 273 119 0 0 chr13 44791143 44791185 -57081984 + (CAA)n Simple_repeat Simple_repeat 1 42 0 4295 183 54 5 chr13 44791185 44791989 -57081180 + L1PB4 LINE L1 5263 6148 -8 360 339 8 0 chr13 44792194 44792312 -57080857 - L1 LINE L1 -2160 3986 3868 233 278 0 0 chr13 44792449 44792503 -57080666 + (CTA)n Simple_repeat Simple_repeat 2 55 0 719 339 58 19 chr13 44792653 44793173 -57079996 - L1 LINE L1 -2663 3483 2944 2656 109 3 3 chr13 44793411 44793786 -57079383 + THE1C LTR MaLR 1 375 0 1670 176 134 29 chr13 44794794 44795203 -57077966 + LTR10A LTR ERV1 97 548 -61 271 304 117 41 chr13 44795287 44796277 -57076892 - L1M4 LINE L1 -2406 3740 2676 1625 199 55 39 chr13 44796852 44797270 -57075899 - MER39 LTR ERV1 -8 699 67 31 68 0 0 chr13 44799047 44799106 -57074063 + AT_rich Low_complexity Low_complexity 1 59 0 262 214 12 60 chr13 44799122 44799206 -57073963 - MER116 DNA Mariner 0 80 1 25 51 0 0 chr13 44799444 44799483 -57073686 + AT_rich Low_complexity Low_complexity 1 39 0 489 314 74 0 chr13 44799697 44799872 -57073297 - L2 LINE L2 -731 2583 2396 201 282 0 28 chr13 44800766 44800837 -57072332 + A-rich Low_complexity Low_complexity 3 71 0 214 214 18 0 chr13 44802062 44802118 -57071051 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 0 0 0 chr13 44803498 44803520 -57069649 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 60 chr13 44803545 44803595 -57069574 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 227 349 128 0 chr13 44804921 44805007 -57068162 - MIR SINE MIR -63 145 49 277 284 73 28 chr13 44805105 44805214 -57067955 + L2 LINE L2 3158 3271 -1 812 177 35 54 chr13 44805285 44805488 -57067681 + L1ME1 LINE L1 5581 5779 -385 488 213 15 11 chr13 44805496 44805627 -57067542 + L1ME1 LINE L1 6045 6183 -1 1405 273 57 14 chr13 44806893 44807122 -57066047 + L1MEc LINE L1 1842 2060 -4155 1464 191 0 53 chr13 44807122 44807442 -57065727 + AluJo SINE Alu 1 303 -9 1405 273 57 14 chr13 44807442 44808061 -57065108 + L1MEc LINE L1 2060 2690 -3525 405 300 61 0 chr13 44808075 44808322 -57064847 + L1MEc LINE L1 2938 3199 -3016 222 250 15 29 chr13 44808494 44808562 -57064607 + L2 LINE L2 3202 3268 -4 578 129 10 0 chr13 44810449 44810539 -57062630 + (TAGA)n Simple_repeat Simple_repeat 1 94 -8 2076 136 3 0 chr13 44810539 44810834 -57062335 - AluSg SINE Alu -14 296 1 578 129 10 0 chr13 44810834 44810844 -57062325 + (TAGA)n Simple_repeat Simple_repeat 94 102 0 222 205 0 0 chr13 44813525 44813564 -57059605 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 523 308 76 30 chr13 44813688 44813952 -57059217 - L2 LINE L2 -280 3033 2761 277 359 12 41 chr13 44814176 44814346 -57058823 + L2 LINE L2 2152 2316 -998 194 375 34 34 chr13 44814475 44814563 -57058606 + L2 LINE L2 3168 3255 -58 22 0 0 0 chr13 44814905 44814927 -57058242 + AT_rich Low_complexity Low_complexity 1 22 0 1127 157 64 15 chr13 44814960 44815164 -57058005 - AluJb SINE Alu -11 301 88 2240 131 100 3 chr13 44815449 44815839 -57057330 + MSTA LTR MaLR 1 428 0 9607 163 19 3 chr13 44815848 44817465 -57055704 + MSTA-int LTR MaLR 9 1651 0 2159 125 120 3 chr13 44817465 44817848 -57055321 + MSTA LTR MaLR 1 428 0 2001 218 69 24 chr13 44818867 44819359 -57053810 + MER67D LTR ERV1 1 514 0 279 296 25 0 chr13 44819372 44819453 -57053716 - MIR SINE MIR -21 241 159 5388 152 21 15 chr13 44819455 44820346 -57052823 + MER4D LTR ERV1 1 897 -6 214 420 109 24 chr13 44820535 44820864 -57052305 - L2 LINE L2 0 3272 2916 253 317 145 45 chr13 44820907 44821308 -57051861 - L2 LINE L2 -442 2872 2432 220 218 18 0 chr13 44821821 44821876 -57051293 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 32 26 0 0 chr13 44823021 44823060 -57050109 + AT_rich Low_complexity Low_complexity 1 39 0 811 188 67 54 chr13 44823883 44824107 -57049062 + L1MC2 LINE L1 6110 6336 -8 243 300 30 30 chr13 44824183 44824283 -57048886 - MER101 LTR ERV1 -29 445 346 2085 154 103 8 chr13 44824292 44824681 -57048488 - MSTA LTR MaLR -2 426 1 520 279 105 43 chr13 44824745 44825021 -57048148 - MER101B LTR ERV1 -277 293 1 1135 184 165 48 chr13 44826079 44826437 -57046732 - MER31B LTR ERV1 -55 411 12 3030 136 109 20 chr13 44826530 44827128 -57046041 + MER39B LTR ERV1 3 653 0 28 61 0 0 chr13 44827268 44827317 -57045852 + AT_rich Low_complexity Low_complexity 1 49 0 233 153 69 14 chr13 44827622 44827694 -57045475 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 24 32 0 0 chr13 44827728 44827759 -57045410 + AT_rich Low_complexity Low_complexity 1 31 0 1540 147 86 31 chr13 44827811 44828133 -57045036 + Tigger2a DNA MER2_type 1 340 -94 4001 153 22 27 chr13 44828133 44828847 -57044322 + MER50 LTR ERV1 1 711 -23 2693 73 103 5 chr13 44828852 44829260 -57043909 + LTR7 LTR ERV1 1 448 -2 10635 96 11 30 chr13 44829262 44831372 -57041797 + HERVH LTR ERV1 1 2196 -5517 189 250 0 0 chr13 44831505 44831545 -57041624 + L2 LINE L2 3210 3249 -23 2224 103 0 31 chr13 44831687 44832006 -57041163 - AluSx SINE Alu -3 309 1 217 323 50 20 chr13 44832031 44832130 -57041039 + L2 LINE L2 2955 3056 -216 4995 168 37 31 chr13 44833750 44834731 -57038438 + L1MB2 LINE L1 31 1017 -5367 1129 165 52 13 chr13 44834732 44834962 -57038207 + MER41B LTR ERV1 397 635 0 2711 121 22 5 chr13 44834962 44835377 -57037792 + MER41B-int LTR ERV1 1 422 -5524 2989 214 94 44 chr13 44835394 44836236 -57036933 + MER52A LTR ERV1 125 1008 -747 1250 176 17 21 chr13 44836236 44836474 -57036695 + MER41B-int LTR ERV1 2394 2630 -4907 * 4886 125 73 25 chr13 44836465 44837332 -57035837 + MER41B-int LTR ERV1 2777 3684 -3853 * 11775 107 21 29 chr13 44837331 44839270 -57033899 + MER41B-int LTR ERV1 2941 4893 -1053 2400 91 10 0 chr13 44839270 44839577 -57033592 - AluY SINE Alu -1 310 1 11775 107 21 29 chr13 44839577 44839674 -57033495 + MER41B-int LTR ERV1 4893 4989 -957 1847 165 3 52 chr13 44839674 44840001 -57033168 - AluSx SINE Alu -1 311 1 11775 107 21 29 chr13 44840001 44840177 -57032992 + MER41B-int LTR ERV1 4989 5944 -2 3234 112 14 73 chr13 44840177 44840738 -57032431 + MER41B LTR ERV1 1 528 -107 913 281 28 29 chr13 44840983 44841394 -57031775 + MLT1G1 LTR MaLR 87 524 -31 3293 78 11 0 chr13 44841823 44842258 -57030911 - L1PA7 LINE L1 -30 6124 5685 7804 197 58 84 chr13 44842260 44846152 -57027017 + L1MB2 LINE L1 2202 5975 -432 1951 149 14 65 chr13 44846152 44846507 -57026662 + MER1B DNA MER1_type 1 337 0 7804 197 58 84 chr13 44846507 44846930 -57026239 + L1MB2 LINE L1 5975 6407 0 2640 99 3 0 chr13 44846964 44847318 -57025851 - THE1A LTR MaLR 0 355 1 11388 96 10 2 chr13 44847318 44848887 -57024282 - THE1A-int LTR MaLR 0 1580 1 2487 108 8 8 chr13 44848889 44849241 -57023928 - THE1A LTR MaLR -2 353 2 1519 199 14 7 chr13 44849241 44849518 -57023651 - AluJb SINE Alu -33 279 1 378 0 0 0 chr13 44849692 44849734 -57023435 + (TA)n Simple_repeat Simple_repeat 2 43 0 476 333 15 0 chr13 44849914 44850046 -57023123 - MIR3 SINE MIR -15 193 60 572 314 103 0 chr13 44850159 44850344 -57022825 - MIR SINE MIR -58 204 1 22 0 0 0 chr13 44850624 44850646 -57022523 + AT_rich Low_complexity Low_complexity 1 22 0 2068 196 61 12 chr13 44851345 44851774 -57021395 - MER74C LTR ERVL 0 460 11 315 339 79 23 chr13 44851840 44852017 -57021152 - MLT1J2 LTR MaLR -62 388 202 254 191 36 83 chr13 44852051 44852135 -57021034 - MLT1J2 LTR MaLR -304 146 67 242 260 10 0 chr13 44852236 44852336 -57020833 + (CATATA)n Simple_repeat Simple_repeat 2 102 0 1082 275 17 8 chr13 44852616 44852925 -57020244 - L1ME3A LINE L1 -291 5879 5572 25 31 0 0 chr13 44853735 44853767 -57019402 + AT_rich Low_complexity Low_complexity 1 32 0 1300 205 66 15 chr13 44853767 44854040 -57019129 - AluJo SINE Alu -25 287 1 320 271 117 8 chr13 44855914 44856044 -57017125 - MIR SINE MIR -69 139 44 194 188 0 21 chr13 44856054 44856102 -57017067 + (CA)n Simple_repeat Simple_repeat 2 48 0 253 340 37 27 chr13 44857006 44857194 -57015975 - L2 LINE L2 0 3313 3124 236 224 35 59 chr13 44858251 44858336 -57014833 - MLT1J LTR MaLR 0 511 429 308 200 73 82 chr13 44858389 44858499 -57014670 - MLT1J LTR MaLR -172 339 231 219 186 0 0 chr13 44860179 44860222 -57012947 + A-rich Low_complexity Low_complexity 1 43 0 377 314 25 0 chr13 44860762 44860883 -57012286 + L2 LINE L2 3190 3313 0 1755 88 20 0 chr13 44861250 44861499 -57011670 - L1PA13 LINE L1 -4 6159 5906 2216 86 7 0 chr13 44861499 44861802 -57011367 + L1PA13 LINE L1 5599 5903 -265 513 281 77 94 chr13 44862260 44862490 -57010679 - L1MEd LINE L1 -5084 1035 802 1866 147 18 4 chr13 44862490 44862803 -57010366 - AluSx SINE Alu 0 317 1 513 281 77 94 chr13 44862803 44863303 -57009866 - L1MEd LINE L1 -5317 802 317 272 327 33 7 chr13 44863406 44863559 -57009610 - L1MEd LINE L1 -5960 159 3 185 268 0 0 chr13 44863631 44863672 -57009497 - MIR SINE MIR -8 254 214 203 226 0 16 chr13 44864283 44864345 -57008824 + (TA)n Simple_repeat Simple_repeat 1 61 0 2624 106 3 11 chr13 44865055 44865422 -57007747 + THE1B LTR MaLR 1 364 0 247 313 93 0 chr13 44865668 44865818 -57007351 - MER117 DNA MER1_type -33 164 1 181 244 0 0 chr13 44865837 44865878 -57007291 - L2 LINE L2 -299 2973 2933 235 327 20 46 chr13 44866124 44866277 -57006892 + LTR67 LTR ERVL 9 157 -400 300 309 139 39 chr13 44866334 44866593 -57006576 + LTR67 LTR ERVL 251 535 -22 335 211 11 22 chr13 44866723 44866813 -57006356 - MER67D LTR ERV1 -120 394 306 248 125 62 21 chr13 44866859 44866907 -57006262 - MER67D LTR ERV1 -230 313 264 7907 185 51 13 chr13 44866915 44868516 -57004653 + MER52A LTR ERV1 1 1755 0 1027 153 77 70 chr13 44868516 44868771 -57004398 - MER67D LTR ERV1 -284 259 1 24 53 0 0 chr13 44869296 44869334 -57003835 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 44869498 44869520 -57003649 + AT_rich Low_complexity Low_complexity 1 22 0 262 271 0 0 chr13 44870750 44870809 -57002360 - MIR SINE MIR -1 261 203 2410 209 31 30 chr13 44870813 44871387 -57001782 - MER90 LTR ERV1 0 575 1 359 256 50 40 chr13 44871737 44871936 -57001233 + L1ME4a LINE L1 5691 5891 -230 340 278 6 18 chr13 44871962 44872131 -57001038 + L1ME4a LINE L1 5955 6121 0 28 48 0 0 chr13 44872536 44872578 -57000591 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr13 44872798 44872830 -57000339 + AT_rich Low_complexity Low_complexity 1 32 0 860 287 76 38 chr13 44873103 44873525 -56999644 - LTR40a LTR ERVL -2 517 80 5615 189 51 32 chr13 44874195 44874437 -56998732 + Tigger6b DNA MER2_type 2 238 -1359 1847 219 10 25 chr13 44874437 44874839 -56998330 + MSTD LTR MaLR 1 396 0 5615 189 51 32 chr13 44874839 44874984 -56998185 + Tigger6b DNA MER2_type 238 379 -1218 228 35 0 0 chr13 44874984 44875013 -56998156 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5615 189 51 32 chr13 44875013 44875815 -56997354 + Tigger6b DNA MER2_type 379 1235 -362 1893 200 41 51 chr13 44875815 44876325 -56996844 + MLT1D LTR MaLR 1 505 0 5615 189 51 32 chr13 44876325 44876691 -56996478 + Tigger6b DNA MER2_type 1235 1593 -4 315 0 0 0 chr13 44876696 44876731 -56996438 + (CA)n Simple_repeat Simple_repeat 2 36 0 1297 187 4 26 chr13 44877240 44877470 -56995699 - AluJb SINE Alu -35 277 53 303 260 87 32 chr13 44878184 44878332 -56994837 - L1ME LINE L1 -296 5825 5660 2382 80 0 6 chr13 44878332 44878643 -56994526 - AluSc SINE Alu 0 309 1 303 260 87 32 chr13 44878643 44878713 -56994456 - L1ME LINE L1 -461 5660 5595 546 286 95 22 chr13 44882755 44882986 -56990183 + LTR33 LTR ERVL 131